Citrus Sinensis ID: 015844
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 399 | 2.2.26 [Sep-21-2011] | |||||||
| Q41249 | 398 | Protochlorophyllide reduc | N/A | no | 0.997 | 1.0 | 0.867 | 0.0 | |
| Q42536 | 405 | Protochlorophyllide reduc | yes | no | 1.0 | 0.985 | 0.837 | 0.0 | |
| Q9SDT1 | 398 | Protochlorophyllide reduc | N/A | no | 0.992 | 0.994 | 0.837 | 0.0 | |
| Q01289 | 399 | Protochlorophyllide reduc | N/A | no | 0.997 | 0.997 | 0.845 | 0.0 | |
| P21218 | 401 | Protochlorophyllide reduc | no | no | 0.997 | 0.992 | 0.823 | 0.0 | |
| Q42850 | 395 | Protochlorophyllide reduc | N/A | no | 0.987 | 0.997 | 0.757 | 1e-179 | |
| O48741 | 401 | Protochlorophyllide reduc | no | no | 0.994 | 0.990 | 0.771 | 1e-179 | |
| Q8W3D9 | 402 | Protochlorophyllide reduc | yes | no | 0.987 | 0.980 | 0.749 | 1e-176 | |
| Q41578 | 388 | Protochlorophyllide reduc | N/A | no | 0.962 | 0.989 | 0.729 | 1e-160 | |
| P13653 | 388 | Protochlorophyllide reduc | N/A | no | 0.962 | 0.989 | 0.729 | 1e-160 |
| >sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/399 (86%), Positives = 375/399 (93%), Gaps = 1/399 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV A S+PKEGK+S KDSSLFG+SFS+H K++FSSS LRCKRE +Q+ G
Sbjct: 1 MALQAASLVSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 IRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +S YPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGL SSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLK-SSMIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITF 299
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
ASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQVVS+PSLTKSGV
Sbjct: 300 ASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVVSEPSLTKSGV 359
Query: 361 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
YWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 360 YWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Cucumis sativus (taxid: 3659) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 3 |
| >sp|Q42536|PORA_ARATH Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/405 (83%), Positives = 366/405 (90%), Gaps = 6/405 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS----LFGVSFSEHAKADFSSSALRCKREFSQ 56
MALQAA+LV SAFSV K+GK +AS S LFGVS SE +KADF SS+LRCKRE S
Sbjct: 1 MALQAASLVSSAFSVRKDGKLNASASSSFKESSLFGVSLSEQSKADFVSSSLRCKREQSL 60
Query: 57 RN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+
Sbjct: 61 RNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHV 120
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAV
Sbjct: 121 IMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV 180
Query: 175 YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234
Y PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSITGNTNTL
Sbjct: 181 YQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTL 240
Query: 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE 294
AGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE
Sbjct: 241 AGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHE 300
Query: 295 ETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354
+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV+DPS
Sbjct: 301 DTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPS 360
Query: 355 LTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
LTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 361 LTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). PORA may also function as a photoprotectant during the transitory stage from dark to light. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/401 (83%), Positives = 370/401 (92%), Gaps = 5/401 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQ--RN 58
MALQAA+ +PS+FS+ KEGK + S K++SLFGV+FS+ + DFSS LR +R Q +
Sbjct: 1 MALQAASFLPSSFSINKEGKANVSLKETSLFGVTFSDSLRTDFSS--LRTRRGCRQISQT 58
Query: 59 GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118
G +R+Q +AT +P+V+ ++ +GKKTLRKGSVIITGASSGLGLATAKALAETGKWH+IMAC
Sbjct: 59 GAIRSQAVAT-TPSVNRATGEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMAC 117
Query: 119 RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT 178
RDFLKAERAAKSAGM KENYTIMHLDLASLDSVRQFV+TFRRS RPLDVLVCNAAVY PT
Sbjct: 118 RDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPT 177
Query: 179 AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
AKEPT+TA+GFELSVGTNHLGHFLLSRLLLDDL +SDYPSKRLIIVGSITGNTNTLAGNV
Sbjct: 178 AKEPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSITGNTNTLAGNV 237
Query: 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI 298
PPKANLGDLRG AGGLNG+NSS+MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI
Sbjct: 238 PPKANLGDLRGLAGGLNGMNSSAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGI 297
Query: 299 AFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKS 358
FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVS+PSLTKS
Sbjct: 298 TFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQVVSEPSLTKS 357
Query: 359 GVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
GVYWSWNKDSASFENQLS+EASDVEKARKVWE+SEKLVGLA
Sbjct: 358 GVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Daucus carota (taxid: 4039) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/400 (84%), Positives = 369/400 (92%), Gaps = 2/400 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVS-FSEHAKADFSSSALRCKREFSQRNG 59
MALQ A+++P++FS+PKEGK AS KDS+LFGVS S+ K DF+SSALRCK E Q+ G
Sbjct: 1 MALQTASMLPASFSIPKEGKIGASLKDSTLFGVSSLSDSLKGDFTSSALRCK-ELRQKVG 59
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119
VRA+T A A+PAV+ SS +GKKTLRKG+V+ITGASSGLGLATAKALAE+GKWH+IMACR
Sbjct: 60 AVRAETAAPATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACR 119
Query: 120 DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA 179
D+LKA RAAKSAG+AKENYTIMHLDLASLDSVRQFVD FRRS PLDVL+ NAAVY PTA
Sbjct: 120 DYLKAARAAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTA 179
Query: 180 KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
KEP+FTA+GFE+SVGTNHLGHFLLSRLLL+DLK+SDYPSKRLIIVGSITGNTNTLAGNVP
Sbjct: 180 KEPSFTADGFEISVGTNHLGHFLLSRLLLEDLKKSDYPSKRLIIVGSITGNTNTLAGNVP 239
Query: 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA 299
PKANLGDLRG AGGL GLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRR+HEETGI
Sbjct: 240 PKANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGIT 299
Query: 300 FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSG 359
FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE+E+GKRLAQVVSDPSLTKSG
Sbjct: 300 FASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSG 359
Query: 360 VYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
VYWSWN SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 360 VYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P21218|PORB_ARATH Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/402 (82%), Positives = 359/402 (89%), Gaps = 4/402 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS---LFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA+LV SAFSV K+ K +AS LFG S ++ K++ SS+LR KRE S R
Sbjct: 1 MALQAASLVSSAFSVRKDAKLNASSSSFKDSSLFGASITDQIKSEHGSSSLRFKREQSLR 60
Query: 58 NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117
N +RAQT AT+SP V S GKKTLRKG+V++TGASSGLGLATAKALAETGKW++IMA
Sbjct: 61 NLAIRAQTAATSSPTV-TKSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMA 119
Query: 118 CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
CRDFLKAERAAKS GM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAVY P
Sbjct: 120 CRDFLKAERAAKSVGMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFP 179
Query: 178 TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237
TAKEPT++AEGFELSV TNHLGHFLL+RLLLDDLK+SDYPSKRLIIVGSITGNTNTLAGN
Sbjct: 180 TAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGN 239
Query: 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 297
VPPKANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG
Sbjct: 240 VPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 299
Query: 298 IAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTK 357
+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVSDPSLTK
Sbjct: 300 VTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQVVSDPSLTK 359
Query: 358 SGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
SGVYWSWN SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct: 360 SGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q42850|PORB_HORVU Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 628 bits (1619), Expect = e-179, Method: Compositional matrix adjust.
Identities = 303/400 (75%), Positives = 343/400 (85%), Gaps = 6/400 (1%)
Query: 1 MALQAA-ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNG 59
MALQAA + +PSA S KEG KDS+ FGV ++ K D +S LR KR + +
Sbjct: 1 MALQAATSFLPSALSARKEGAA----KDSAFFGVRLADGLKLDATSLGLRTKR-VNTSSV 55
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119
+RAQ A ++P +SP GKKT+R G+ IITGASSGLGLATAKALAE+GKWH+IMACR
Sbjct: 56 AIRAQAAAVSAPTATPASPAGKKTVRTGNAIITGASSGLGLATAKALAESGKWHVIMACR 115
Query: 120 DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA 179
D+LK RAA++AGM K +YTI+HLDLASLDSVRQFV R+ P+DV+VCNAAVY PTA
Sbjct: 116 DYLKTARAARAAGMPKGSYTIVHLDLASLDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTA 175
Query: 180 KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
KEP+FTA+GFE+SVG NHLGHFLL+R LL+DLK SDYPSKRLIIVGSITGNTNTLAGNVP
Sbjct: 176 KEPSFTADGFEMSVGVNHLGHFLLARELLEDLKASDYPSKRLIIVGSITGNTNTLAGNVP 235
Query: 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA 299
PKANLGDLRG A GLNG+ S++MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETG+
Sbjct: 236 PKANLGDLRGLAAGLNGVGSAAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVT 295
Query: 300 FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSG 359
FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVS+PSLTKSG
Sbjct: 296 FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSG 355
Query: 360 VYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
VYWSWNK+SASFENQLS+EASD EKARKVWE+SEKLVGLA
Sbjct: 356 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|O48741|PORC_ARATH Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 626 bits (1615), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/403 (77%), Positives = 359/403 (89%), Gaps = 6/403 (1%)
Query: 1 MALQAA-ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR-- 57
MALQAA +L+PS S+ KEGK +AS K+++ G SFS H +A+ S+ L K + Q+
Sbjct: 1 MALQAAYSLLPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPR 60
Query: 58 -NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
+ +RAQT+ TA+P + +SP+ KKT RKG+ +ITGASSGLGLATAKALA+TGKWH+IM
Sbjct: 61 FSTGIRAQTV-TATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIM 119
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176
ACR+FLKAE+AA+S GM+KE+YT+MHLDLASL+SV+QFV+ FRR+ +PLDVLVCNAAVY
Sbjct: 120 ACRNFLKAEKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQ 179
Query: 177 PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
PTAKEP+FTAEGFE+SVGTNHLGHFLLSRLLLDDLK+SDYPSKR+IIVGSITGNTNTLAG
Sbjct: 180 PTAKEPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMIIVGSITGNTNTLAG 239
Query: 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
NVPPKANLGDLRG A GLNG N SSMIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEET
Sbjct: 240 NVPPKANLGDLRGLASGLNGQN-SSMIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEET 298
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356
G+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSL
Sbjct: 299 GVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLG 358
Query: 357 KSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA
Sbjct: 359 KSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q8W3D9|PORB_ORYSJ Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1597), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/403 (74%), Positives = 343/403 (85%), Gaps = 9/403 (2%)
Query: 1 MALQAA---ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA + +PSA S KEG + KDS+ GV + K + S+ LR KR S
Sbjct: 1 MALQAATTTSFLPSALSARKEG----AVKDSAFLGVRLGDGLKLETSALGLRTKR-VSTS 55
Query: 58 NGVVRAQ-TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
+ +RAQ + A +SP V +SP GK+TLRKG+ +ITGASSGLGLATAKALAETG+WH++M
Sbjct: 56 SVAIRAQASAAVSSPTVTPASPSGKQTLRKGTAVITGASSGLGLATAKALAETGRWHVVM 115
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176
CRDFLKA RAAK+AGM K +YTI+HLDLASLDSVRQFV RR P+DV+VCNAAVY
Sbjct: 116 GCRDFLKASRAAKAAGMEKGSYTIVHLDLASLDSVRQFVANVRRLEMPVDVVVCNAAVYQ 175
Query: 177 PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
PTAK+P+FTA+GFE+SVG NHLGHFLL+R LL DL SDYPSKRLIIVGSITGNTNTLAG
Sbjct: 176 PTAKQPSFTADGFEMSVGVNHLGHFLLARELLADLTSSDYPSKRLIIVGSITGNTNTLAG 235
Query: 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
NVPPKANLGDLRG A GL+G++SS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRR+H ET
Sbjct: 236 NVPPKANLGDLRGLASGLDGVSSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHGET 295
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356
G+ FASLYPGCIATTGLFREH+PLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSLT
Sbjct: 296 GVTFASLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLT 355
Query: 357 KSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
KSGVYWSWN +SASFENQLS+EASD EKA+KVWE+SEKLVGLA
Sbjct: 356 KSGVYWSWNNNSASFENQLSEEASDPEKAKKVWELSEKLVGLA 398
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q41578|PORA_WHEAT Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 294/403 (72%), Positives = 343/403 (85%), Gaps = 19/403 (4%)
Query: 1 MALQAAALVPSAFSVPKEGKT--SASFKDSSLF-GVSFSEHAKADFSSSALRCKREFSQR 57
MALQ L+PS SVPK+G + +A+ KD++ F GVS +KA +S A+R +
Sbjct: 1 MALQ---LLPSTLSVPKKGSSMGAAAVKDTAAFLGVS----SKAKKASLAVRTQ------ 47
Query: 58 NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117
V A + T SP + P GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MA
Sbjct: 48 --VATAPSSVTTSPGSATAKPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMA 105
Query: 118 CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
CRDFLKA +AAK+AGMA +YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAA+Y P
Sbjct: 106 CRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRP 165
Query: 178 TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237
TA+ PTFTA+G E+SVG NHLGHFLL+RLL++DL++SDYPS+R++IVGSITGN+NTLAGN
Sbjct: 166 TARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAGN 225
Query: 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
VPPKA+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEET
Sbjct: 226 VPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEET 285
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356
GI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++PSLT
Sbjct: 286 GITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPSLT 345
Query: 357 KSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
KSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 346 KSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Triticum aestivum (taxid: 4565) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P13653|PORA_HORVU Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1455), Expect = e-160, Method: Compositional matrix adjust.
Identities = 294/403 (72%), Positives = 342/403 (84%), Gaps = 19/403 (4%)
Query: 1 MALQAAALVPSAFSVPKEGKT--SASFKDSSLF-GVSFSEHAKADFSSSALRCKREFSQR 57
MALQ L+PS SVPK+G + + + KD++ F GVS +KA +S A+R +
Sbjct: 1 MALQ---LLPSTLSVPKKGSSMGAVAVKDTAAFLGVS----SKAKKASLAVRTQ------ 47
Query: 58 NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117
V A + T SP SSP GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MA
Sbjct: 48 --VATAPSPVTTSPGSTASSPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMA 105
Query: 118 CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
CRDFLKA +AAK+AGMA +YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAA+Y P
Sbjct: 106 CRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRP 165
Query: 178 TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237
TA+ PTFTA+G E+SVG NHLGHFLL+RLL++DL++SDYPS+R++IVGSITGN+NTLAGN
Sbjct: 166 TARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAGN 225
Query: 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
VPPKA+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEET
Sbjct: 226 VPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEET 285
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356
GI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++P LT
Sbjct: 286 GITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPVLT 345
Query: 357 KSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
KSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 346 KSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 399 | ||||||
| 224117218 | 399 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.882 | 0.0 | |
| 449446951 | 399 | PREDICTED: protochlorophyllide reductase | 1.0 | 1.0 | 0.877 | 0.0 | |
| 356544016 | 399 | PREDICTED: protochlorophyllide reductase | 1.0 | 1.0 | 0.892 | 0.0 | |
| 255587362 | 396 | short-chain dehydrogenase, putative [Ric | 0.989 | 0.997 | 0.898 | 0.0 | |
| 224128374 | 399 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.884 | 0.0 | |
| 10720220 | 398 | RecName: Full=Protochlorophyllide reduct | 0.997 | 1.0 | 0.867 | 0.0 | |
| 359493870 | 396 | PREDICTED: protochlorophyllide reductase | 0.992 | 1.0 | 0.869 | 0.0 | |
| 297796287 | 404 | hypothetical protein ARALYDRAFT_495501 [ | 1.0 | 0.987 | 0.841 | 0.0 | |
| 15239574 | 405 | protochlorophyllide reductase A [Arabido | 1.0 | 0.985 | 0.837 | 0.0 | |
| 968975 | 405 | NADPH:protochlorophyllide oxidoreductase | 1.0 | 0.985 | 0.834 | 0.0 |
| >gi|224117218|ref|XP_002317511.1| predicted protein [Populus trichocarpa] gi|222860576|gb|EEE98123.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/399 (88%), Positives = 372/399 (93%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV SAF PKEGK++A FKDSSLFGVS SEH KADFSS AL+CKREF+Q G
Sbjct: 1 MALQAASLVSSAFVFPKEGKSNAYFKDSSLFGVSLSEHVKADFSSCALKCKREFNQGVGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
VRAQTM A+PA+D +S + KKTL +G+ I+TGASSGLGLATAKALAETGKWHIIMACR+
Sbjct: 61 VRAQTMVAATPALDRASSESKKTLGQGTCIVTGASSGLGLATAKALAETGKWHIIMACRN 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EP FTAEGFELSVGTNHLGHFLLSRLLL+D+K SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPAFTAEGFELSVGTNHLGHFLLSRLLLEDMKISDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG +GGLNGLN S+MIDGG FDGAKAYKDSKVCNMLTMQEFHRR HEETGIAF
Sbjct: 241 KANLGDLRGLSGGLNGLNRSAMIDGGVFDGAKAYKDSKVCNMLTMQEFHRRLHEETGIAF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSE EAGKRLAQVVSDPSLTKSG
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEHEAGKRLAQVVSDPSLTKSGA 360
Query: 361 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
YWSWNK SASF+NQLSQEASD EKARKVWEISEKLVGLA
Sbjct: 361 YWSWNKHSASFQNQLSQEASDAEKARKVWEISEKLVGLA 399
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446951|ref|XP_004141233.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Cucumis sativus] gi|449530269|ref|XP_004172118.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/399 (87%), Positives = 378/399 (94%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV A S+PKEGK+S KDSSLFG+SFS+H K++FSSS LRCKRE +Q+ G
Sbjct: 1 MALQAASLVSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 IRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGLNSSSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
ASLYPGCIATTGLFREHIPLFR+LFPPFQK+ITKGYVSEDEAGKRLAQVVS+PSLTKSGV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRILFPPFQKFITKGYVSEDEAGKRLAQVVSEPSLTKSGV 360
Query: 361 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
YWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 361 YWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 399
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544016|ref|XP_003540452.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/399 (89%), Positives = 376/399 (94%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LVP++FSV KEGK+ S KDS+LFG+SFSE KA+FSSSALRCKREF Q+
Sbjct: 1 MALQAASLVPASFSVLKEGKSGVSLKDSTLFGLSFSEPIKANFSSSALRCKREFEQKLCA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
VRA+T+ATASPAV S+P+GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 VRAETVATASPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
+LKA RAAKSAGMAKENYTIMHLDLASLDSVRQFVD FRRS PLDVLVCNAAVYLPTAK
Sbjct: 121 YLKAARAAKSAGMAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL++SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLEKSDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG GGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI F
Sbjct: 241 KANLGDLRGLQGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGITF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
ASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
Query: 361 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
YWSWNK SASFENQLSQEASD EKARK+WEISEKLVG A
Sbjct: 361 YWSWNKASASFENQLSQEASDTEKARKIWEISEKLVGFA 399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587362|ref|XP_002534245.1| short-chain dehydrogenase, putative [Ricinus communis] gi|223525646|gb|EEF28135.1| short-chain dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/395 (89%), Positives = 375/395 (94%)
Query: 5 AAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQ 64
A++LV S F V KEGK+SASFKDSSLFGVS S+H KAD SSSA R KRE +QR G VRAQ
Sbjct: 2 ASSLVSSTFVVLKEGKSSASFKDSSLFGVSLSDHLKADHSSSAFRFKREPNQRVGAVRAQ 61
Query: 65 TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 124
TMATASPAV+ ++P+GKKTLRKGSVI+TGASSGLGLATAKALAETGKWHIIMACRDFLK
Sbjct: 62 TMATASPAVNRAAPEGKKTLRKGSVIVTGASSGLGLATAKALAETGKWHIIMACRDFLKT 121
Query: 125 ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
ERAAKSAG++KENYTIMHLDLASLDSVRQFVD F+RSGRPLDVLVCNAAVYLPTAKEPTF
Sbjct: 122 ERAAKSAGISKENYTIMHLDLASLDSVRQFVDNFKRSGRPLDVLVCNAAVYLPTAKEPTF 181
Query: 185 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244
TAEGFELSVGTNHLGHFLLSRLLL+DL++SDYPSKRLIIVGSITGNTNTLAGNVPPKANL
Sbjct: 182 TAEGFELSVGTNHLGHFLLSRLLLEDLQKSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 241
Query: 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 304
GD+RG AGGLNGLNSS+MIDGG+FDGAKAYKDSKVCNML MQEFHRRFHEETGI FASLY
Sbjct: 242 GDMRGLAGGLNGLNSSAMIDGGNFDGAKAYKDSKVCNMLIMQEFHRRFHEETGITFASLY 301
Query: 305 PGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364
PGCIATTGLFREHIPLFR LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW
Sbjct: 302 PGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 361
Query: 365 NKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
NKDSASFENQLSQEASD +KARKVWEISEKLVGLA
Sbjct: 362 NKDSASFENQLSQEASDADKARKVWEISEKLVGLA 396
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128374|ref|XP_002329146.1| predicted protein [Populus trichocarpa] gi|222869815|gb|EEF06946.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/399 (88%), Positives = 377/399 (94%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV SAF VPKEGK+SAS K+SSL GVS S+H KADFSSS L+ KREF+QR
Sbjct: 1 MALQAASLVSSAFVVPKEGKSSASLKESSLLGVSLSDHVKADFSSSTLKWKREFNQRVRT 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
VRAQ+MATA+PAV+ +S GKKTLR+G I+TGASSGLGLA AKALAETGKWH+IMACRD
Sbjct: 61 VRAQSMATATPAVNRASSDGKKTLRQGCCIVTGASSGLGLAAAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+AKEN TIMHLDLASLDSVRQFVDTF+RSGR LDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGIAKENCTIMHLDLASLDSVRQFVDTFKRSGRALDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+D+K+SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDMKKSDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGLNSS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRRFHEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRFHEETGITF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSE++AGKRLAQVVSDPSLTKSGV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEEDAGKRLAQVVSDPSLTKSGV 360
Query: 361 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
YWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 361 YWSWNKDSASFENQLSQEASDEEKARKVWEVSEKLVGLA 399
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10720220|sp|Q41249.1|PORA_CUCSA RecName: Full=Protochlorophyllide reductase, chloroplastic; Short=PCR; AltName: Full=NADPH-protochlorophyllide oxidoreductase; Short=POR; Flags: Precursor gi|2244614|dbj|BAA21089.1| NADPH-protochlorophyllide oxidoreductase [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/399 (86%), Positives = 375/399 (93%), Gaps = 1/399 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV A S+PKEGK+S KDSSLFG+SFS+H K++FSSS LRCKRE +Q+ G
Sbjct: 1 MALQAASLVSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 IRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +S YPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGL SSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLK-SSMIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITF 299
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
ASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQVVS+PSLTKSGV
Sbjct: 300 ASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVVSEPSLTKSGV 359
Query: 361 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
YWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 360 YWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493870|ref|XP_002284769.2| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Vitis vinifera] gi|302143044|emb|CBI20339.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/399 (86%), Positives = 377/399 (94%), Gaps = 3/399 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MA+QAAALVPSAFS+PKEGK SASFK+S LFGVS S+H KADFSSSALR KR+ S G
Sbjct: 1 MAMQAAALVPSAFSIPKEGKGSASFKESGLFGVSLSDHVKADFSSSALRNKRKPSV--GA 58
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT +PA+ ++P+GKKTLRKG+V+ITGASSGLGLAT KALAETGKWHIIMACRD
Sbjct: 59 IRAQTAAT-TPAITRATPEGKKTLRKGTVVITGASSGLGLATTKALAETGKWHIIMACRD 117
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAA+SAG++KENYT+MHLDLASLDSVRQFVD F+RS RPLDVLVCNAAVYLPTAK
Sbjct: 118 FLKAERAARSAGLSKENYTVMHLDLASLDSVRQFVDNFKRSERPLDVLVCNAAVYLPTAK 177
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTA+GFELSVGTNHLGHFLL+RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 178 EPTFTADGFELSVGTNHLGHFLLARLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 237
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGLNSS+MIDGG FDGAKAYKDSKVCNMLTMQEFHRR+HE+TGI F
Sbjct: 238 KANLGDLRGMAGGLNGLNSSAMIDGGAFDGAKAYKDSKVCNMLTMQEFHRRYHEDTGITF 297
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 360
ASLYPGCIATTGLFREHIPLFRLLFPPFQK+ITKGYVSE+E+GKRLAQVVS+PSLTKSGV
Sbjct: 298 ASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGYVSEEESGKRLAQVVSEPSLTKSGV 357
Query: 361 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
YWSWNK+SASFENQLSQEASD +KARKVWE+SEKLV LA
Sbjct: 358 YWSWNKNSASFENQLSQEASDADKARKVWELSEKLVRLA 396
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796287|ref|XP_002866028.1| hypothetical protein ARALYDRAFT_495501 [Arabidopsis lyrata subsp. lyrata] gi|297311863|gb|EFH42287.1| hypothetical protein ARALYDRAFT_495501 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/404 (84%), Positives = 366/404 (90%), Gaps = 5/404 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS---LFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA+LV SAFSVPK+GK +AS LFGVS SEH+KADF SS+LRCKRE S R
Sbjct: 1 MALQAASLVSSAFSVPKDGKLNASSSSFKESSLFGVSLSEHSKADFVSSSLRCKREQSLR 60
Query: 58 N--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHII 115
N ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+I
Sbjct: 61 NNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHVI 120
Query: 116 MACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175
MACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAVY
Sbjct: 121 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVY 180
Query: 176 LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235
PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSITGNTNTLA
Sbjct: 181 QPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLA 240
Query: 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE 295
GNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE+
Sbjct: 241 GNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHED 300
Query: 296 TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355
TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV DPSL
Sbjct: 301 TGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSETEAGKRLAQVVGDPSL 360
Query: 356 TKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
TKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 361 TKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 404
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239574|ref|NP_200230.1| protochlorophyllide reductase A [Arabidopsis thaliana] gi|26454645|sp|Q42536.2|PORA_ARATH RecName: Full=Protochlorophyllide reductase A, chloroplastic; Short=PCR A; AltName: Full=NADPH-protochlorophyllide oxidoreductase A; Short=POR A; Flags: Precursor gi|10178168|dbj|BAB11581.1| NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|28392935|gb|AAO41903.1| putative NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|28827538|gb|AAO50613.1| putative NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|332009081|gb|AED96464.1| protochlorophyllide reductase A [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/405 (83%), Positives = 366/405 (90%), Gaps = 6/405 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS----LFGVSFSEHAKADFSSSALRCKREFSQ 56
MALQAA+LV SAFSV K+GK +AS S LFGVS SE +KADF SS+LRCKRE S
Sbjct: 1 MALQAASLVSSAFSVRKDGKLNASASSSFKESSLFGVSLSEQSKADFVSSSLRCKREQSL 60
Query: 57 RN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+
Sbjct: 61 RNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHV 120
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAV
Sbjct: 121 IMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV 180
Query: 175 YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234
Y PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSITGNTNTL
Sbjct: 181 YQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTL 240
Query: 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE 294
AGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE
Sbjct: 241 AGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHE 300
Query: 295 ETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354
+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV+DPS
Sbjct: 301 DTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPS 360
Query: 355 LTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
LTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 361 LTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|968975|gb|AAC49043.1| NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|1583455|prf||2120441A protochlorophyllide oxidoreductase | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/405 (83%), Positives = 366/405 (90%), Gaps = 6/405 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS----LFGVSFSEHAKADFSSSALRCKREFSQ 56
MALQAA+LV SAFSV K+GK +AS S LFG+S SE +KADF SS+LRCKRE S
Sbjct: 1 MALQAASLVSSAFSVRKDGKLNASASSSFKESSLFGISLSEQSKADFVSSSLRCKREQSL 60
Query: 57 RN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+
Sbjct: 61 RNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHV 120
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAV
Sbjct: 121 IMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV 180
Query: 175 YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234
Y PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSITGNTNTL
Sbjct: 181 YQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTL 240
Query: 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE 294
AGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE
Sbjct: 241 AGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHE 300
Query: 295 ETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354
+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV+DPS
Sbjct: 301 DTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPS 360
Query: 355 LTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
LTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 361 LTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 399 | ||||||
| TAIR|locus:2153438 | 405 | PORA "protochlorophyllide oxid | 1.0 | 0.985 | 0.822 | 2.9e-174 | |
| TAIR|locus:2124044 | 401 | PORB "protochlorophyllide oxid | 0.997 | 0.992 | 0.813 | 2.7e-171 | |
| TAIR|locus:2020738 | 401 | POR C "protochlorophyllide oxi | 0.994 | 0.990 | 0.746 | 2.5e-159 | |
| ZFIN|ZDB-GENE-030131-6605 | 334 | rdh14b "retinol dehydrogenase | 0.340 | 0.407 | 0.439 | 1.3e-30 | |
| ZFIN|ZDB-GENE-041010-124 | 286 | rdh14a "retinol dehydrogenase | 0.340 | 0.475 | 0.405 | 3e-29 | |
| ZFIN|ZDB-GENE-050522-387 | 298 | zgc:112332 "zgc:112332" [Danio | 0.343 | 0.459 | 0.367 | 5.5e-29 | |
| ZFIN|ZDB-GENE-040801-48 | 291 | rdh12l "retinol dehydrogenase | 0.350 | 0.481 | 0.373 | 2.6e-27 | |
| ZFIN|ZDB-GENE-030131-4716 | 331 | wu:fd55e03 "wu:fd55e03" [Danio | 0.355 | 0.429 | 0.394 | 5.3e-27 | |
| ZFIN|ZDB-GENE-070912-611 | 292 | si:dkey-94e7.2 "si:dkey-94e7.2 | 0.350 | 0.479 | 0.4 | 2.9e-26 | |
| ZFIN|ZDB-GENE-060825-39 | 336 | zgc:153441 "zgc:153441" [Danio | 0.338 | 0.401 | 0.419 | 6.4e-26 |
| TAIR|locus:2153438 PORA "protochlorophyllide oxidoreductase A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1693 (601.0 bits), Expect = 2.9e-174, P = 2.9e-174
Identities = 333/405 (82%), Positives = 360/405 (88%)
Query: 1 MALQAAALVPSAFSVPKEGK----TSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQ 56
MALQAA+LV SAFSV K+GK S+SFK+SSLFGVS SE +KADF SS+LRCKRE S
Sbjct: 1 MALQAASLVSSAFSVRKDGKLNASASSSFKESSLFGVSLSEQSKADFVSSSLRCKREQSL 60
Query: 57 RNG--VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+
Sbjct: 61 RNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHV 120
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAV
Sbjct: 121 IMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV 180
Query: 175 YLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTL 234
Y PTA +PTFTAEGFELSVG NHLGHF K SDYPSKRLIIVGSITGNTNTL
Sbjct: 181 YQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTL 240
Query: 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE 294
AGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE
Sbjct: 241 AGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHE 300
Query: 295 ETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354
+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV+DPS
Sbjct: 301 DTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPS 360
Query: 355 LTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
LTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 361 LTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
|
|
| TAIR|locus:2124044 PORB "protochlorophyllide oxidoreductase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1665 (591.2 bits), Expect = 2.7e-171, P = 2.7e-171
Identities = 327/402 (81%), Positives = 355/402 (88%)
Query: 1 MALQAAALVPSAFSVPKEGK---TSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA+LV SAFSV K+ K +S+SFKDSSLFG S ++ K++ SS+LR KRE S R
Sbjct: 1 MALQAASLVSSAFSVRKDAKLNASSSSFKDSSLFGASITDQIKSEHGSSSLRFKREQSLR 60
Query: 58 NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117
N +RAQT AT+SP V S GKKTLRKG+V++TGASSGLGLATAKALAETGKW++IMA
Sbjct: 61 NLAIRAQTAATSSPTV-TKSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMA 119
Query: 118 CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
CRDFLKAERAAKS GM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAVY P
Sbjct: 120 CRDFLKAERAAKSVGMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFP 179
Query: 178 TAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGN 237
TAKEPT++AEGFELSV TNHLGHF K+SDYPSKRLIIVGSITGNTNTLAGN
Sbjct: 180 TAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGN 239
Query: 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 297
VPPKANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG
Sbjct: 240 VPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 299
Query: 298 IAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTK 357
+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVSDPSLTK
Sbjct: 300 VTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQVVSDPSLTK 359
Query: 358 SGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
SGVYWSWN SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct: 360 SGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
|
|
| TAIR|locus:2020738 POR C "protochlorophyllide oxidoreductase C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1552 (551.4 bits), Expect = 2.5e-159, P = 2.5e-159
Identities = 301/403 (74%), Positives = 349/403 (86%)
Query: 1 MALQAA-ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR-- 57
MALQAA +L+PS S+ KEGK +AS K+++ G SFS H +A+ S+ L K + Q+
Sbjct: 1 MALQAAYSLLPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPR 60
Query: 58 -NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
+ +RAQT+ TA+P + +SP+ KKT RKG+ +ITGASSGLGLATAKALA+TGKWH+IM
Sbjct: 61 FSTGIRAQTV-TATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIM 119
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176
ACR+FLKAE+AA+S GM+KE+YT+MHLDLASL+SV+QFV+ FRR+ +PLDVLVCNAAVY
Sbjct: 120 ACRNFLKAEKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQ 179
Query: 177 PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAG 236
PTAKEP+FTAEGFE+SVGTNHLGHF K+SDYPSKR+IIVGSITGNTNTLAG
Sbjct: 180 PTAKEPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMIIVGSITGNTNTLAG 239
Query: 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
NVPPKANLGDLRG A GLNG NSS MIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEET
Sbjct: 240 NVPPKANLGDLRGLASGLNGQNSS-MIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEET 298
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356
G+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSL
Sbjct: 299 GVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLG 358
Query: 357 KSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399
KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA
Sbjct: 359 KSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
|
|
| ZFIN|ZDB-GENE-030131-6605 rdh14b "retinol dehydrogenase 14b (all-trans/9-cis/11-cis)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 65/148 (43%), Positives = 88/148 (59%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYT 139
+R +VI+TGA+ G+G ATA L + + +IMACRD +AE AA+ AG ++
Sbjct: 50 MRGKTVIVTGANCGIGKATAAELLKL-QARVIMACRDRQRAEDAARDIQNQAGASQGEIV 108
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHL 198
I HLDLASL SVR+F + R +DVL+ NA +Y P +K T EGFE+ +G NHL
Sbjct: 109 IKHLDLASLQSVRRFCEEVIREEPRIDVLINNAGLYQCPYSK----TEEGFEMQLGVNHL 164
Query: 199 GHFXXXXXXXXXXKQSDYPSKRLIIVGS 226
GHF KQS PS R+++V S
Sbjct: 165 GHFLLTNLLLDLLKQSS-PS-RVVVVSS 190
|
|
| ZFIN|ZDB-GENE-041010-124 rdh14a "retinol dehydrogenase 14a (all-trans/9-cis/11-cis)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 60/148 (40%), Positives = 81/148 (54%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYT 139
LR +VI+TGA+SG+G AT L + +IMACRD +AE+AA+ AG +
Sbjct: 2 LRGKTVIVTGANSGIGKATTTELLRR-QARVIMACRDRERAEKAAQEIKQEAGPEQGELV 60
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHL 198
I LDLASL SVR F + + +D+L+ NA +Y P K + +GFE+ NHL
Sbjct: 61 IKLLDLASLKSVRVFCEGIIKEEPRIDILINNAGIYQCPYTK----SEDGFEMQFAVNHL 116
Query: 199 GHFXXXXXXXXXXKQSDYPSKRLIIVGS 226
GHF K S PS R+I+V S
Sbjct: 117 GHFLLTNLLLDLLKCSA-PS-RIIVVSS 142
|
|
| ZFIN|ZDB-GENE-050522-387 zgc:112332 "zgc:112332" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
Identities = 54/147 (36%), Positives = 83/147 (56%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIM 141
L + +VIITGA++G+G TA+ LA G ++MACRD KAE A + +N +
Sbjct: 18 LDEKTVIITGANTGIGKETARDLARRGA-RVVMACRDLEKAEAARRELMDNSGNQNIVVK 76
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGH 200
LDLA S++ F + + + +++L+ NA + + P +K TA+GFE+ G NHLGH
Sbjct: 77 KLDLADTKSIKAFAELINKEEKQVNILINNAGIMMCPYSK----TADGFEMQFGVNHLGH 132
Query: 201 FXXXXXXXXXXKQSDYPSKRLIIVGSI 227
F K+S PS R++ V S+
Sbjct: 133 FLLIYLLLDLLKKST-PS-RIVNVASV 157
|
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| ZFIN|ZDB-GENE-040801-48 rdh12l "retinol dehydrogenase 12, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDL 145
+V+ITGA++G+G TA LA+ G IIMACRD KAE A K ++ I LDL
Sbjct: 15 TVLITGANTGIGKETAIDLAKRGA-RIIMACRDMEKAEAALKEVKDSSGNQDVFISSLDL 73
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXX 204
+ S+R F + + + +++L+ NA V + P K TA+GFE+ +G NH+GHF
Sbjct: 74 SDSKSIRGFAEKINKEEKQVNILINNAGVMVCPYGK----TADGFEMQIGVNHMGHFLLT 129
Query: 205 XXXXXXXKQSDYPSKRLIIVGSITGNTNTL 234
K+S P+ R+I V S T+
Sbjct: 130 YLLLDLIKRSA-PA-RIINVSSTAHQWGTI 157
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| ZFIN|ZDB-GENE-030131-4716 wu:fd55e03 "wu:fd55e03" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
Identities = 60/152 (39%), Positives = 87/152 (57%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKE 136
+ K L +V+ITG ++G+G TA +A+ G +I+ACRD +A +AA+ E
Sbjct: 46 RSKARLNGKTVLITGGNTGIGKETAVDMAKRGA-RVILACRDMSRAHKAAEEIRKRSGNE 104
Query: 137 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF-TAEGFELSVGT 195
N T+ LDLASL SVR V ++S + LD+L+ NA V + P + T EGFE+ +G
Sbjct: 105 NVTVKMLDLASLQSVRDLVKDVQQSEQRLDILINNAGVMMC----PKWHTDEGFEMQIGV 160
Query: 196 NHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSI 227
NHLGHF K+S PS R++ V S+
Sbjct: 161 NHLGHFLLTNLLLDMLKKSA-PS-RIVNVASV 190
|
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| ZFIN|ZDB-GENE-070912-611 si:dkey-94e7.2 "si:dkey-94e7.2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 60/150 (40%), Positives = 84/150 (56%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDL 145
++IITGA++G+G T K LA+ G IIMACRD KAERA + +N I LDL
Sbjct: 18 TIIITGANTGIGKETTKDLAKRGP-RIIMACRDVEKAERAQREIMEESGNQNIVIRKLDL 76
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXX 204
+ S+R+F + R L +L+ NA V + P +K TA+GFE+ G NHLGHF
Sbjct: 77 SDTRSIREFAEVINSEERSLHLLINNAGVMMCPYSK----TADGFEMQFGVNHLGHFLLT 132
Query: 205 XXXXXXXKQSDYPSKRLIIVGSITGNTNTL 234
K+S PS R+I + S+ + T+
Sbjct: 133 FLLIDLLKRSA-PS-RIINLSSMAHSWGTI 160
|
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| ZFIN|ZDB-GENE-060825-39 zgc:153441 "zgc:153441" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 60/143 (41%), Positives = 83/143 (58%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDL 145
+V+ITGA++G+G TA+ +A G ++MACRD KAE+AA + N I+ HL+L
Sbjct: 54 TVVITGANTGIGKETARDMARRGA-RVVMACRDLSKAEKAAAEIRRSTGNADIVVRHLNL 112
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXX 205
ASL SVRQF + + LD+L+ NA V + K + T +G+E NHLGHF
Sbjct: 113 ASLHSVRQFAHQYTATEDRLDILINNAGVMM-CPK--SLTEDGYETQFAVNHLGHFLLTV 169
Query: 206 XXXXXXKQSDYPSKRLIIVGSIT 228
K+S PS R+I V SIT
Sbjct: 170 LLLDMLKKSS-PS-RVINVSSIT 190
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42850 | PORB_HORVU | 1, ., 3, ., 1, ., 3, 3 | 0.7575 | 0.9874 | 0.9974 | N/A | no |
| Q39617 | POR_CHLRE | 1, ., 3, ., 1, ., 3, 3 | 0.6105 | 0.9774 | 0.9823 | N/A | no |
| Q41578 | PORA_WHEAT | 1, ., 3, ., 1, ., 3, 3 | 0.7295 | 0.9624 | 0.9896 | N/A | no |
| P15904 | POR_AVESA | 1, ., 3, ., 1, ., 3, 3 | 0.8333 | 0.7794 | 0.9936 | N/A | no |
| Q7XKF3 | PORA_ORYSJ | 1, ., 3, ., 1, ., 3, 3 | 0.745 | 0.9624 | 0.9922 | yes | no |
| Q01289 | POR_PEA | 1, ., 3, ., 1, ., 3, 3 | 0.845 | 0.9974 | 0.9974 | N/A | no |
| P21218 | PORB_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.8233 | 0.9974 | 0.9925 | no | no |
| Q42536 | PORA_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.8370 | 1.0 | 0.9851 | yes | no |
| Q9SDT1 | POR_DAUCA | 1, ., 3, ., 1, ., 3, 3 | 0.8379 | 0.9924 | 0.9949 | N/A | no |
| O48741 | PORC_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.7717 | 0.9949 | 0.9900 | no | no |
| O80333 | POR_MARPA | 1, ., 3, ., 1, ., 3, 3 | 0.6994 | 0.9248 | 0.8056 | N/A | no |
| Q8W3D9 | PORB_ORYSJ | 1, ., 3, ., 1, ., 3, 3 | 0.7493 | 0.9874 | 0.9800 | yes | no |
| Q41249 | PORA_CUCSA | 1, ., 3, ., 1, ., 3, 3 | 0.8671 | 0.9974 | 1.0 | N/A | no |
| P13653 | PORA_HORVU | 1, ., 3, ., 1, ., 3, 3 | 0.7295 | 0.9624 | 0.9896 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.3.1 | 0.998 |
| 3rd Layer | 1.3.1.33 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00110948 | protochlorophyllide reductase (EC-1.3.1.33) (399 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_LG_XVI1018 | magnesium protoporphyrin IX monomethyl ester (oxidative) cyclase (EC-1.14.13.81) (405 aa) | • | • | • | 0.907 | |||||
 | estExt_fgenesh4_pg.C_LG_VI0825 | SubName- Full=Putative uncharacterized protein; (372 aa) | • | • | • | 0.904 | |||||
 | estExt_Genewise1_v1.C_LG_XVI3731 | chlorophyll synthetase (EC-2.5.1.62) (329 aa) | • | • | • | 0.903 | |||||
 | estExt_Genewise1_v1.C_LG_V5276 | hypothetical protein (531 aa) | • | • | 0.903 | ||||||
 | gw1.X.5768.1 | chlorophyllase (EC-3.1.1.14) (304 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 399 | |||
| PLN00015 | 308 | PLN00015, PLN00015, protochlorophyllide reductase | 0.0 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 0.0 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 0.0 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 1e-178 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 3e-81 | |
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 4e-48 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 7e-40 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 6e-38 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 2e-31 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 3e-26 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 2e-25 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 7e-22 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 2e-21 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 4e-21 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 8e-18 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 1e-16 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-16 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 1e-14 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 2e-14 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 5e-14 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 1e-13 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 2e-13 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 2e-12 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 2e-12 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 2e-12 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 7e-12 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 7e-12 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-12 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 1e-11 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 2e-11 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 3e-11 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 4e-11 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 5e-11 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 6e-11 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 4e-10 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 7e-10 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 7e-10 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 1e-09 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 2e-09 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 2e-09 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 2e-09 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 2e-09 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 2e-09 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 4e-09 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-09 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 5e-09 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 6e-09 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 6e-09 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 6e-09 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 8e-09 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 1e-08 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 1e-08 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 2e-08 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 2e-08 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 2e-08 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 2e-08 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 2e-08 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 3e-08 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 3e-08 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-08 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 5e-08 | |
| PRK08177 | 225 | PRK08177, PRK08177, short chain dehydrogenase; Pro | 6e-08 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 7e-08 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 7e-08 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 8e-08 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 8e-08 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 1e-07 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-07 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 1e-07 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 1e-07 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 1e-07 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 2e-07 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 2e-07 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 2e-07 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 2e-07 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 2e-07 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 2e-07 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 3e-07 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 4e-07 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 5e-07 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 5e-07 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 6e-07 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 7e-07 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 8e-07 | |
| PRK06953 | 222 | PRK06953, PRK06953, short chain dehydrogenase; Pro | 1e-06 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 1e-06 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 1e-06 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 1e-06 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 1e-06 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 1e-06 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 1e-06 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 1e-06 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 2e-06 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 2e-06 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 2e-06 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 2e-06 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 2e-06 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 2e-06 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 2e-06 | |
| PRK05717 | 255 | PRK05717, PRK05717, oxidoreductase; Validated | 3e-06 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 3e-06 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 4e-06 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 4e-06 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 5e-06 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 5e-06 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 5e-06 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 6e-06 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 7e-06 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 8e-06 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 8e-06 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 1e-05 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 1e-05 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 1e-05 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 1e-05 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 1e-05 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 1e-05 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 2e-05 | |
| PRK07041 | 230 | PRK07041, PRK07041, short chain dehydrogenase; Pro | 2e-05 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 2e-05 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 2e-05 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 2e-05 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 3e-05 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 3e-05 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 3e-05 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 3e-05 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 4e-05 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-05 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 4e-05 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 4e-05 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 4e-05 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 5e-05 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 5e-05 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 6e-05 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 6e-05 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 6e-05 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 7e-05 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 8e-05 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 9e-05 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 1e-04 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 1e-04 | |
| cd11731 | 198 | cd11731, Lin1944_like_SDR_c, Lin1944 and related p | 1e-04 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 1e-04 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 1e-04 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 1e-04 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 1e-04 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 1e-04 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 2e-04 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-04 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 2e-04 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 2e-04 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 2e-04 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 3e-04 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 3e-04 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 4e-04 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 4e-04 | |
| PRK07024 | 257 | PRK07024, PRK07024, short chain dehydrogenase; Pro | 4e-04 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 4e-04 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 5e-04 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 5e-04 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 5e-04 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 5e-04 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 6e-04 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 7e-04 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 7e-04 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 9e-04 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 0.001 | |
| cd08955 | 376 | cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase ( | 0.001 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 0.001 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 0.001 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 0.001 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 0.001 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 0.002 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 0.002 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 0.002 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.002 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 0.002 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 0.002 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 0.002 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 0.003 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 0.003 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 0.003 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 0.004 |
| >gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 689 bits (1781), Expect = 0.0
Identities = 289/308 (93%), Positives = 301/308 (97%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
IITGASSGLGLATAKALAETGKWH++MACRDFLKAERAAKSAGM K++YT+MHLDLASLD
Sbjct: 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLD 60
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
SVRQFVD FRRSGRPLDVLVCNAAVYLPTAKEPTFTA+GFELSVGTNHLGHFLLSRLLLD
Sbjct: 61 SVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLD 120
Query: 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD 269
DLK+SDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGG+FD
Sbjct: 121 DLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFD 180
Query: 270 GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQ 329
GAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQ
Sbjct: 181 GAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQ 240
Query: 330 KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVW 389
KYITKGYVSE+EAGKRLAQVVSDPSLTKSGVYWSWN SASFENQLSQEASD EKA+KVW
Sbjct: 241 KYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNGGSASFENQLSQEASDAEKAKKVW 300
Query: 390 EISEKLVG 397
EISEKLVG
Sbjct: 301 EISEKLVG 308
|
Length = 308 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 587 bits (1516), Expect = 0.0
Identities = 247/316 (78%), Positives = 267/316 (84%), Gaps = 2/316 (0%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
+K +VIITGASSGLGL AKALA TG+WH+IMACRDFLKAE+AAKS GM K++YTIMHL
Sbjct: 1 QQKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHL 60
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
DL SLDSVRQFV FR SGRPLD LVCNAAVY PTAKEP FTA+GFELSVGTNHLGHFLL
Sbjct: 61 DLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLL 120
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 263
LLLDDLK S KRLIIVGSITGNTNTLAGNVPPKANLGDL G A G +MI
Sbjct: 121 CNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPI--AMI 178
Query: 264 DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323
DG +F GAKAYKDSKVCNMLT++E HRRFH+ETGI FASLYPGCIA TGLFREH+PLFR
Sbjct: 179 DGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238
Query: 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVE 383
LFPPFQKYITKGYVSE+EAG+RLAQVVSDP L KSGVYWSW SF NQLS+E SD
Sbjct: 239 LFPPFQKYITKGYVSEEEAGERLAQVVSDPKLKKSGVYWSWGNRQESFVNQLSEEVSDDS 298
Query: 384 KARKVWEISEKLVGLA 399
KA K+W++SEKLVGLA
Sbjct: 299 KASKMWDLSEKLVGLA 314
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 561 bits (1448), Expect = 0.0
Identities = 241/313 (76%), Positives = 272/313 (86%), Gaps = 2/313 (0%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
KG+V+ITGASSGLGLA AKALA G+WH++MACRDFLKAE+AA+ GM K++Y+++H DL
Sbjct: 1 KGTVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDL 60
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
ASLDSVRQFVD FRR+GRPLD LVCNAAVYLPTAKEP FTA+GFEL+VG NHLGHFLL+
Sbjct: 61 ASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHFLLTN 120
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LLL+DL++S+ S R++IVGSIT N NTLAGNVPP+A LGDL G AGGL G N SMIDG
Sbjct: 121 LLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFN--SMIDG 178
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325
G+F+GAKAYKDSKVCNMLT E HRR HEETGI F SLYPGCIA TGLFREH PLFR LF
Sbjct: 179 GEFEGAKAYKDSKVCNMLTTYELHRRLHEETGITFNSLYPGCIAETGLFREHYPLFRTLF 238
Query: 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKA 385
PPFQKYITKGYVSE+EAG+RLA V++DPSL SGVYWSW K S SFENQ SQE+SD EKA
Sbjct: 239 PPFQKYITKGYVSEEEAGERLAAVIADPSLGVSGVYWSWGKASGSFENQSSQESSDDEKA 298
Query: 386 RKVWEISEKLVGL 398
RK+WEISEKLVGL
Sbjct: 299 RKLWEISEKLVGL 311
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 499 bits (1287), Expect = e-178
Identities = 189/321 (58%), Positives = 236/321 (73%), Gaps = 9/321 (2%)
Query: 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG+VIITGASSG+GL AKALA+ G WH+IMACR+ KAE AA+ G+ ++YTI+H+D
Sbjct: 5 AKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHID 63
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
L LDSVR+FVD FR G+PLD LVCNAAVY+P KEP + +G+ELS+ TNHLGHFLL
Sbjct: 64 LGDLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLC 123
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN--VPPKANLGDLRGFAGGLNGLNSSSM 262
LLL+DLK+S P RL+I+G++T N L G +P A+LGDL GF G SM
Sbjct: 124 NLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPADLGDLSGFEAGF--KAPISM 181
Query: 263 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322
DG F KAYKDSK+CNMLTM+E HRR+HE TGI F+SLYPGC+A T LFR PLF+
Sbjct: 182 ADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRNTPPLFQ 241
Query: 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW----NKDSASFENQLSQE 378
LFP FQK IT GYVS++ AG+R+AQVV+DP +SGV+WSW KD +F +LS
Sbjct: 242 KLFPWFQKNITGGYVSQELAGERVAQVVADPEFAQSGVHWSWGNRQKKDRKAFSQELSDR 301
Query: 379 ASDVEKARKVWEISEKLVGLA 399
A+D +KAR++W++S KLVGLA
Sbjct: 302 ATDDDKARRLWDLSAKLVGLA 322
|
Length = 322 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 3e-81
Identities = 103/305 (33%), Positives = 140/305 (45%), Gaps = 43/305 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 146
V+ITGA+SG+G TA+ LA+ G H+I+ACR+ K E AA ++ LDL+
Sbjct: 4 VVITGANSGIGKETARELAKRG-AHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLDLS 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SL SVRQF + F LD+L+ NA + P + T +GFEL N+LGHFLL+ L
Sbjct: 63 SLASVRQFAEEFLARFPRLDILINNAGIMAPPRRL---TKDGFELQFAVNYLGHFLLTNL 119
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGG 266
LL LK S R++ V SI + N N
Sbjct: 120 LLPVLKAS--APSRIVNVSSIAHRAGPIDFNDLDLEN---------------------NK 156
Query: 267 DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PLFRLLF 325
++ KAY SK+ N+L +E RR E TG+ +L+PG + T L R L L
Sbjct: 157 EYSPYKAYGQSKLANILFTRELARR-LEGTGVTVNALHPGVVRTELLRRNGSFFLLYKLL 215
Query: 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDSASFENQLSQEASDVEK 384
PF K S ++ + + P L SG Y+S K S EA D E
Sbjct: 216 RPFLK------KSPEQGAQTALYAATSPELEGVSGKYFSDCK-----IKMSSSEALDEEL 264
Query: 385 ARKVW 389
A K+W
Sbjct: 265 AEKLW 269
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 4e-48
Identities = 115/316 (36%), Positives = 153/316 (48%), Gaps = 57/316 (18%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
VIITGA++G+G TA+ LA G +IMACRD K E AA N+ ++ HLDLA
Sbjct: 4 VIITGANTGIGKETARELARRGA-RVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLDLA 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SL S+R F F LDVL+ NA V P +K T +GFE+ G NHLGHFLL+
Sbjct: 63 SLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSK----TEDGFEMQFGVNHLGHFLLTN 118
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LLLD LK+S PS R++ V S+ AG + + LNS
Sbjct: 119 LLLDLLKKSA-PS-RIVNVSSLA----HKAGKIN--------------FDDLNSEK---- 154
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI------- 318
++ AY SK+ N+L +E RR + TG+ +L+PG + T L R H
Sbjct: 155 -SYNTGFAYCQSKLANVLFTRELARRL-QGTGVTVNALHPG-VVRTELGR-HTGIHHLFL 210
Query: 319 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTK-SGVYWSWNKDSASFENQLS 376
L LF PF K + E + + L SG Y+S K + +
Sbjct: 211 STLLNPLFWPFVK-------TPREGAQTSIYLALAEELEGVSGKYFSDCK-----LKEPA 258
Query: 377 QEASDVEKARKVWEIS 392
EA D E AR++WEIS
Sbjct: 259 PEAMDEETARRLWEIS 274
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 7e-40
Identities = 107/323 (33%), Positives = 154/323 (47%), Gaps = 59/323 (18%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 146
+IITGA+SG+G TA++ A G H+I+ACR+ +A A K M LDLA
Sbjct: 4 IIITGANSGIGFETARSFALHGA-HVILACRNMSRASAAVSRILEEWHKARVEAMTLDLA 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SL SV++F + F+ PL VLVCNAAV+ A T T +G E + NHLGHF L +L
Sbjct: 63 SLRSVQRFAEAFKAKNSPLHVLVCNAAVF---ALPWTLTEDGLETTFQVNHLGHFYLVQL 119
Query: 207 LLDDLKQSDYPSKRLIIVGSIT---GNTNTLAGNV------PPKANLGDLRGFAGGLNGL 257
L D L++S R+I+V S + + GN+ PPK
Sbjct: 120 LEDVLRRS--APARVIVVSSESHRFTDLPDSCGNLDFSLLSPPKKKYW------------ 165
Query: 258 NSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317
SM+ AY +K+CN+L E HRR GI SL+PG + + + R
Sbjct: 166 ---SML---------AYNRAKLCNILFSNELHRRLSPR-GITSNSLHPGNMMYSSIHRNW 212
Query: 318 IPLFRLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTK-SGVYWSWNKDSASFEN 373
++ LLF PF K + +G + + P L G+Y+ + F
Sbjct: 213 W-VYTLLFTLARPFTKSMQQGAATT-------VYCATAPELEGLGGMYF-----NNCFRC 259
Query: 374 QLSQEASDVEKARKVWEISEKLV 396
S EA A+++WE+SE+L+
Sbjct: 260 LPSPEAQSEATAQQLWELSERLI 282
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-38
Identities = 101/334 (30%), Positives = 149/334 (44%), Gaps = 76/334 (22%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 146
++TGA++GLG TA ALA G H+++A R+ K + AA +A + T+ LDL
Sbjct: 19 AVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLT 77
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SL SVR D R + +D+L+ NA V Y P TA+GFEL GTNHLGHF L+
Sbjct: 78 SLASVRAAADALRAAYPRIDLLINNAGVMYTPKQT----TADGFELQFGTNHLGHFALTG 133
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LLLD L P R++ V S G + I
Sbjct: 134 LLLDRLL--PVPGSRVVTVSS----------------------------GGHRIRAAIHF 163
Query: 266 GD------FDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLFREH 317
D ++ AY SK+ N+L E RR IA A+ +PG ++ T L R +
Sbjct: 164 DDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAA-HPG-VSNTELAR-N 220
Query: 318 IP-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN------- 365
+P + +L P + G + A +DP++ + G Y+ +
Sbjct: 221 LPRALRPVATVLAPLLAQSPEMGALPTLRAA-------TDPAV-RGGQYYGPDGFGEQRG 272
Query: 366 --KDSASFENQLSQEASDVEKARKVWEISEKLVG 397
K AS S ++ D + R++W +SE+L G
Sbjct: 273 YPKVVAS-----SAQSHDEDLQRRLWAVSEELTG 301
|
Length = 306 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-31
Identities = 95/330 (28%), Positives = 135/330 (40%), Gaps = 70/330 (21%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TG SGLGL T +ALA+ G H+I+ R A A AG+ + ++ LDLA L+
Sbjct: 30 IVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREAL--AGI--DGVEVVMLDLADLE 84
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
SVR F + F SGR +D+L+ NA V A T +G+E TNHLGHF L LL
Sbjct: 85 SVRAFAERFLDSGRRIDILINNAGV---MACPETRVGDGWEAQFATNHLGHFALVNLLWP 141
Query: 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD 269
L R++ + S AG+ D F G +D
Sbjct: 142 ALAAGA--GARVVALSS--------AGHRRSPIRWDDPH-FTRG--------------YD 176
Query: 270 GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQ 329
AY SK N L + ++ G+ S++PG I T PL R L P +
Sbjct: 177 KWLAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILT--------PLQRHL--PRE 225
Query: 330 KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS----------------------WNKD 367
+ + G+V DE G + P+ + W+ KD
Sbjct: 226 EQVALGWV--DEHGNPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCEDCDIAEPTPKD 283
Query: 368 SASFENQLSQEASDVEKARKVWEISEKLVG 397
+ + A D E A ++W +S L G
Sbjct: 284 APWS--GVRPHAIDPEAAARLWALSAALTG 311
|
Length = 315 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-26
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGASSG+G A A+ LA G +++A R+ A + + D++
Sbjct: 1 ALVTGASSGIGRAIARRLAREG-AKVVLADRNEEALAELAAIEALGGNAVAV-QADVSDE 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ V V+ LD+LV NA + P E T E ++ + N G FLL+R L
Sbjct: 59 EDVEALVEEALEEFGRLDILVNNAGIARPGPLE-ELTDEDWDRVLDVNLTGVFLLTRAAL 117
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+K+ R++ + S+ G
Sbjct: 118 PHMKKQGGG--RIVNISSVAG 136
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 94/324 (29%), Positives = 131/324 (40%), Gaps = 50/324 (15%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKENYTIMHLDL 145
++TGAS GLGL A+ LA G +I+ R+ K E A + AK ++ LDL
Sbjct: 18 VVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAK--LSLRALDL 74
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+SL SV + R GRP+ +L+ NA V P ++ TA+GFEL GTNHLGHF L+
Sbjct: 75 SSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQT--TADGFELQFGTNHLGHFALTA 132
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LL L+ R+ SI + N D LN S
Sbjct: 133 HLLPLLRAG---RARVTSQSSIAARRGAI--------NWDD-------LNWERS------ 168
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEET-GIAFASLYPGCIATTGLF-------REH 317
+ G +AY SK+ L E RR GI +PG +A T L R+
Sbjct: 169 --YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPG-VAPTNLLAARPEVGRDK 225
Query: 318 -IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY---WSWNKDSASFEN 373
+ RL+ + G V + A + P Y E
Sbjct: 226 DTLMVRLIRSLSARGFLVGTV--ESAILPALYAATSPDAEGGAFYGPRGPGELGGGPVEQ 283
Query: 374 QLSQEASDVEKARKVWEISEKLVG 397
L +A ++WE+SE+L G
Sbjct: 284 ALYPPLRRNAEAARLWEVSEQLTG 307
|
Length = 313 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 7e-22
Identities = 73/296 (24%), Positives = 109/296 (36%), Gaps = 82/296 (27%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL--- 145
V+ITGAS G+GL + L G +I CRD A + G + I+ LD+
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRD-PSAATELAALGASHSRLHILELDVTDE 59
Query: 146 --ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
S ++V + R LDVL+ NA + +E N LG LL
Sbjct: 60 IAESAEAVAE-----RLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLL 114
Query: 204 SRLLLDDLKQSDYPSKRLII-----VGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLN 258
++ L L + ++ II VGSI NT
Sbjct: 115 TQAFLPLLLKG---ARAKIINISSRVGSIGDNT--------------------------- 144
Query: 259 SSSMIDGGDFDGAKAYKDSKVC-NMLTMQEFHRRFHEE---TGIAFASLYPGCIAT--TG 312
GG + +Y+ SK NMLT + E GI SL+PG + T G
Sbjct: 145 -----SGGWY----SYRASKAALNMLT-----KSLAVELKRDGITVVSLHPGWVRTDMGG 190
Query: 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368
PF K KG ++ +E+ L +V+ + + SG + ++
Sbjct: 191 --------------PFAK--NKGPITPEESVAGLLKVIDNLNEEDSGKFLDYDGTE 230
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-21
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 89 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLA 146
++TGASSG+G A A+ALA G + + + AE A + A + D++
Sbjct: 8 ALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVS 67
Query: 147 S-LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+SV V +D+LV NA + P A T E ++ + N LG FLL+R
Sbjct: 68 DDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTR 127
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNT 233
L +K+ +R++ + S+ G
Sbjct: 128 AALPLMKK-----QRIVNISSVAGLGGP 150
|
Length = 251 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 4e-21
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 44/223 (19%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G + LA++G +I+ RD + + A + + LD+
Sbjct: 3 ALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDD 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+ D LD+LV NA + + T T E ++ TN G +++ LL
Sbjct: 63 ASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVTQALL 122
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF 268
LK+S R++ V S G+ +
Sbjct: 123 PLLKKSPAG--RIVNVSSGLGSLTS----------------------------------- 145
Query: 269 DGAKAYKDSKVC-NMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
AY SK N LT + +ETGI + PG + T
Sbjct: 146 ----AYGVSKAALNALTR--ILAKELKETGIKVNACCPGWVKT 182
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 8e-18
Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDL 145
S +ITGA+SG+G A A A+A+ G + M CR+ +AE A K +N + +D+
Sbjct: 3 SFLITGANSGIGKAAALAIAKRGG-TVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDM 61
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ V +FV+ F+ G+ L VL+ NA + + T +G E + TN LG ++L+
Sbjct: 62 SDPKQVWEFVEEFKEEGKKLHVLINNAGCMV---NKRELTEDGLEKNFATNTLGTYILTT 118
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
L+ L++ + P R+I V S G + K N +L+ +
Sbjct: 119 HLIPVLEKEEDP--RVITVSS--------GGMLVQKLNTNNLQS--------------ER 154
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321
FDG Y +K ++ +++ ++ E I F+ ++PG T + R +P F
Sbjct: 155 TAFDGTMVYAQNKRQQVIMTEQWAKKHPE---IHFSVMHPGWADTPAV-RNSMPDF 206
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-16
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLD 144
G+V+ITG + GLGLA A+ LA G H+++ R A A + T+ D
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACD 60
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+A D++ + + PLD +V NA V L T E FE + G + L
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGV-LDDGPLEELTPERFERVLAPKVTGAWNLH 119
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
L D ++ S+ G
Sbjct: 120 ELTRDL------DLGAFVLFSSVAG 138
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 2e-16
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA G +++ + AE A A ++ D++
Sbjct: 8 ALVTGASRGIGRAIALRLAADG-AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDE 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+VR ++ + LD+LV NA + A P + E ++ + N G F + R L
Sbjct: 67 AAVRALIEAAVEAFGALDILVNNAGIT-RDALLPRMSEEDWDRVIDVNLTGTFNVVRAAL 125
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ ++ Y R++ + S++G + GN
Sbjct: 126 PPMIKARY--GRIVNISSVSG----VTGNP 149
|
Length = 246 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG SSG+GLA A ALA G + +I R+ K E + +N ++ LD+
Sbjct: 3 VLITGCSSGIGLALALALAAQG-YRVIATARNPDKLE---SLGELLNDNLEVLELDVTDE 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+S++ V +DVLV NA L E + E N G ++R L
Sbjct: 59 ESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLE-ETSIEEVRELFEVNVFGPLRVTRAFL 117
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+++ S R++ V S+ G
Sbjct: 118 PLMRKQ--GSGRIVNVSSVAG 136
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A A LA G +I+ A A+ A +D+
Sbjct: 9 ALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDR 67
Query: 149 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+++ V GR LD+LV NA ++ T E +E + N G FLL++
Sbjct: 68 AALKAAVAAGVEDFGR-LDILVANAGIFPLTPFA-EMDDEQWERVIDVNLTGTFLLTQAA 125
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L L ++ R+++ S+ G
Sbjct: 126 LPALIRAGGG--RIVLTSSVAG 145
|
Length = 251 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 5e-14
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---- 137
TL+ +ITGASSG+G ATA+ALAE G +++A R R + +A E
Sbjct: 2 TTLKGKVALITGASSGIGEATARALAEAG-AKVVLAAR------REERLEALADEIGAGA 54
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+ LD+ +V ++ +D+LV NA + L + ++ + TN
Sbjct: 55 ALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALG-DPLDEADLDDWDRMIDTNV 113
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
G +R +L + + S +I +GSI G G V
Sbjct: 114 KGLLNGTRAVLPGMVERK--SGHIINLGSIAGRYPYPGGAV 152
|
Length = 246 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT----IMHLD 144
V+ITGASSG+G ATA+ A+ G +I+ R +AER + A + + LD
Sbjct: 3 VLITGASSGIGEATARRFAKAG-AKLILTGR---RAERLQELADELGAKFPVKVLPLQLD 58
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ +S+ ++ R +D+LV NA + L E +E + TN G ++
Sbjct: 59 VSDRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLLNVT 118
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
RL+L + + +I +GSI G GNV
Sbjct: 119 RLILPIMIARNQGH--IINLGSIAGRYPYAGGNV 150
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
V++TG +SG+G A A+A AE G + H+ L AA +A + T D+A
Sbjct: 13 RVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAAL----AATAARLPGAKVTATVADVA 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
V + DT LDVLV NA + PT T E +E ++ N G F +R
Sbjct: 69 DPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARA 128
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+ LK S +II S
Sbjct: 129 AVPLLKAS--GHGGVIIALSSVA 149
|
Length = 264 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
++TGASSG+G ATA+ LA G R F + A++A + ++ LD+
Sbjct: 4 SKVALVTGASSGIGRATAEKLARAG-------YRVFGTSRNPARAAPIP--GVELLELDV 54
Query: 146 ASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
SV+ VD R+GR +DVLV NA V L A E + A+ L TN G ++
Sbjct: 55 TDDASVQAAVDEVIARAGR-IDVLVNNAGVGLAGAAEESSIAQAQAL-FDTNVFGILRMT 112
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
R +L ++ S R+I + S+ G
Sbjct: 113 RAVLPHMRAQG--SGRIINISSVLG 135
|
Length = 270 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKENYTIMHLD 144
V+ITG SSG+G A AK L + G ++I+ R K E A A + + + + D
Sbjct: 4 VLITGGSSGIGKALAKELVKEGA-NVIIVARSESKLEEAVEEIEAEANASGQKVSYISAD 62
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
L+ + V Q G P D++V A + +P E TAE FE + N+ G ++
Sbjct: 63 LSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFE-DLTAEEFERGMDVNYFGSLNVA 121
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
+L +K + ++ V S
Sbjct: 122 HAVLPLMK--EQRPGHIVFVSSQAA 144
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 41/179 (22%)
Query: 89 VIITGASSGLGLATAKAL----AETGKWHIIMACRDFLKAERA----AKSAGMAKENYTI 140
V++TGA+SGLGLA + L E + +I+ACR+ +AE A S A+ +
Sbjct: 4 VLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFDY 63
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA-----------------------AVYLP 177
+ +DL+++ SV ++ LD L NA AV P
Sbjct: 64 VLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFAVTNP 123
Query: 178 TAK---------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227
T K T +G TN GH+ L R L L +SD S ++I S+
Sbjct: 124 TYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGGS-QIIWTSSL 181
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-12
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 89 VIITGASSGLGLATAKALA--ETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDL 145
V+ITG SSG+GL A LA + ++ + RD K R ++AG +A + LD+
Sbjct: 3 VLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGALAGGTLETLQLDV 62
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SV V+ R +DVLVCNA V L E + + N G + +
Sbjct: 63 CDSKSVAAAVERVT--ERHVDVLVCNAGVGLLGPLE-ALSEDAMASVFDVNVFGTVRMLQ 119
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
L D+K+ S R+++ S+ G
Sbjct: 120 AFLPDMKRRG--SGRILVTSSVGG 141
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-12
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 9/166 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G+ A+ALA G + + + R+ + + + + D
Sbjct: 3 ALVTGASRGIGIEIARALARDG-YRVSLGLRN----PEDLAALSASGGDVEAVPYDARDP 57
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ R VD R +DVLV NA + PT AE E N + L+R LL
Sbjct: 58 EDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAE-LEAHFSINVIAPAELTRALL 116
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L+++ S R++ + S++G LAGN A+ LR A L
Sbjct: 117 PALREA--GSGRVVFLNSLSGKR-VLAGNAGYSASKFALRALAHAL 159
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-12
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLA 146
++TGA+ GLG A A LA G +++ R D AE ++ + D+
Sbjct: 8 VALVTGAARGLGRAIALRLARAG-ADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVT 66
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ V R GR +D+LV NA + + + ++ + N G F L R
Sbjct: 67 DKAALEAAVAAAVERFGR-IDILVNNAGI-FEDKPLADMSDDEWDEVIDVNLSGVFHLLR 124
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
++ +++ R++ + S+ G G
Sbjct: 125 AVVPPMRKQRG--GRIVNISSVAGLPGW-PGRSN 155
|
Length = 249 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
+L+ +ITG S G+G A A+AL G I A RD + E AA K N +
Sbjct: 3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITA-RDQKELEEAAAELN-NKGNVLGLA 60
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV--YLPTAKEPTFTAEGFELSVGTNHLGH 200
D+ V++ VD + LDVL+ NA V + P T E + L + TN G
Sbjct: 61 ADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVE---ELTPEEWRLVIDTNLTGA 117
Query: 201 FLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNS 259
F + + LK+ Y +I + S+ G TN AG A+ F GL G +
Sbjct: 118 FYTIKAAVPALKRGGGY----IINISSLAG-TNFFAGGAAYNAS-----KF--GLVGFSE 165
Query: 260 SSMIDGGDFD 269
++M+D +
Sbjct: 166 AAMLDLRQYG 175
|
Length = 237 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA G + + R A + N + D++
Sbjct: 3 ALVTGASRGIGRAIALRLAAEGA-KVAVTDRSEEAAAETVEEIKALGGNAAALEADVSDR 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++V V+ P+D+LV NA + L E E ++ + N G F ++
Sbjct: 62 EAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSE-----EDWDAVINVNLTGVFNVT 116
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ ++ + + R+I + S+ G L GN
Sbjct: 117 QAVIRAMIKRRS--GRIINISSVVG----LIGNP 144
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+ ++TGA+SG+GLA A+ALA G ++++ AE AAK AG A + + D+
Sbjct: 3 TALVTGAASGIGLAIARALAAAGA-NVVVNDFGEEGAEAAAKVAGDAGGSVIYLPADVTK 61
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D + + LD+LV NA + E F E ++ + F R
Sbjct: 62 EDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIE-EFPPEDWDRIIAVMLTSAFHTIRAA 120
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L +K+ + R+I + S G
Sbjct: 121 LPHMKKQGW--GRIINIASAHG 140
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G ATAK LA G +++A D AE AA G + + D+
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELG-GPDRALGVACDVTDE 482
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V+ + + +D++V NA + + E T + E + S N GHFL++R
Sbjct: 483 AAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEET-SDEDWRRSFDVNATGHFLVAR 538
|
Length = 681 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-11
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLA 146
V+ITG +SG+GLA A+ E G +I+ R R + A KE I + LD+
Sbjct: 8 VLITGGTSGIGLALARKFLEAGN-TVIITGR------REERLAEAKKELPNIHTIVLDVG 60
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+SV + LD+L+ NA + P ++P + + + TN +G L +
Sbjct: 61 DAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDKADTEIDTNLIGPIRLIK 120
Query: 206 LLLDDLK 212
L LK
Sbjct: 121 AFLPHLK 127
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-11
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L + ++TG + G+G A + LA G + R+ + +
Sbjct: 3 NLEGKTALVTGGTKGIGYAIVEELAGLGA-EVYTCARNQKELDECLTEWREKGFKVEGSV 61
Query: 143 LDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGH 200
D++S ++ +DT G L++LV NA + KE +T E + L + TN
Sbjct: 62 CDVSSRSERQELMDTVASHFGGKLNILVNNAGTNIR--KEAKDYTEEDYSLIMSTNFEAA 119
Query: 201 FLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ LSRL LK S + ++ + S+ G
Sbjct: 120 YHLSRLAHPLLKASGNGN--IVFISSVAG 146
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG+S G+G A A+ LA+ G +I+ RD K AA+S + + D+ D
Sbjct: 14 LVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHD 72
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 196
+VR +D F P+D+LV NA + T E F A+ FE + TN
Sbjct: 73 AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLE-DFPADAFERLLRTN 118
|
Length = 255 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-10
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG G+G E G ++ A D ER A A N +H D+A
Sbjct: 4 AIVTGGGHGIGKQICLDFLEAG-DKVVFADID---EERGADFAEAEGPNLFFVHGDVADE 59
Query: 149 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V+ V + GR +DVLV NAA + E ++ + N G + LSR
Sbjct: 60 TLVKFVVYAMLEKLGR-IDVLVNNAARGSKGILS-SLLLEEWDRILSVNLTGPYELSRYC 117
Query: 208 LDDL 211
D+L
Sbjct: 118 RDEL 121
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
LR V ITG + G+GLATA+ALA G + + D A+ A G+ L
Sbjct: 3 LRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGP----L 57
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
D+ S F+D P+DVLV NA V
Sbjct: 58 DVTDPASFAAFLDAVEADLGPIDVLVNNAGV 88
|
Length = 273 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLAS 147
I+TGASSG GL T LA+ G + +I R+ K E A ++N + LD+
Sbjct: 7 IVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF--ELSVG-------TNHL 198
+S+ F + GR +D+LV NA + GF E+ V TN
Sbjct: 66 QNSIHNFQLVLKEIGR-IDLLVNNAG----------YANGGFVEEIPVEEYRKQFETNVF 114
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
G +++ +L +++ S ++I + SI+G
Sbjct: 115 GAISVTQAVLPYMRKQK--SGKIINISSISG 143
|
Length = 280 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 5/147 (3%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
+ I+TGAS G+G A A LA G I D +A A D+
Sbjct: 1 RPVAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADI 60
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLS 204
L +D LD LV NA + + + T + F+ + N G F L+
Sbjct: 61 GELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFLT 120
Query: 205 ----RLLLDDLKQSDYPSKRLIIVGSI 227
R +++ + D P + +I V SI
Sbjct: 121 QAVARRMVEQPDRFDGPHRSIIFVTSI 147
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L+ ++TGA+SG+GL A ALA+ G +++A + A AA++ K +
Sbjct: 1 MLKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEAL--QKAGGKAIG 57
Query: 143 L--DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
+ D+ +++ +D G +D+LV NA + E F E ++ + G
Sbjct: 58 VAMDVTDEEAINAGIDYAVETFGG-VDILVNNAGIQHVAPIE-DFPTEKWKKMIAIMLDG 115
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
FL ++ L +K R+I + S+ G
Sbjct: 116 AFLTTKAALPIMKAQGG--GRIINMASVHG 143
|
Length = 258 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 52/184 (28%), Positives = 71/184 (38%), Gaps = 27/184 (14%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
+ ++TGAS G+G ATA+ L G I A RD + AA E + D+
Sbjct: 1 KAALVTGASRGIGEATARLLHAEGYRVGICA-RDEARLAAAAAQEL---EGVLGLAGDVR 56
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
VR+ VD + LD LV NA V + T E + L + TN G F
Sbjct: 57 DEADVRRAVDAMEEAFGGLDALVNNAGVGV-MKPVEELTPEEWRLVLDTNLTGAFYCIHK 115
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAG------GLNGLNSS 260
L IV N +LAG +G A GL GL+ +
Sbjct: 116 AAPALL----RRGGGTIV-----NVGSLAGKNA-------FKGGAAYNASKFGLLGLSEA 159
Query: 261 SMID 264
+M+D
Sbjct: 160 AMLD 163
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
ITG +G+G A AKA AE G + +A R E AA+ SA + + D+
Sbjct: 6 AFITGGGTGIGKAIAKAFAELG-ASVAIAGRKPEVLEAAAEEISSATGGRAHPIQC--DV 62
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++V VD + +D+L+ NAA E + + GF+ + + G F ++
Sbjct: 63 RDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAE-SLSPNGFKTVIDIDLNGTFNTTK 121
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235
+ L ++ + GSI + T A
Sbjct: 122 AVGKRLIEAKHG-------GSILNISATYA 144
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTI 140
++ + +ITGASSG+G AK LA G ++I+ R K E AK +
Sbjct: 2 GPMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEV 60
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTNHL 198
+ DL+ +++ + D + G P+DVLV NA + P + + + E + N L
Sbjct: 61 IPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLE---LSLDEEEEMIQLNIL 117
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
L++ +L + + +I +GS G
Sbjct: 118 ALTRLTKAVLPGMVERGA--GHIINIGSAAGLI 148
|
Length = 265 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER-AAKSAGMAKEN 137
QGK VIITGASSG+G A LA G ++++ R + E ++ + +
Sbjct: 2 QGKV------VIITGASSGIGEELAYHLARLGA-RLVLSARREERLEEVKSECLELGAPS 54
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
++ LD++ L+ Q V+ + LD+L+ NA + + + T + + + N+
Sbjct: 55 PHVVPLDMSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDT-SIDVDRKIMEVNY 113
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
G L++ L L + S +++V SI G
Sbjct: 114 FGPVALTKAALPHLIERSQGS--IVVVSSIAG 143
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ LA G +I AE G + D++
Sbjct: 8 ALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDA 67
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSRL 206
+SV + VD + +D+LV NA + T E ++ + TN G F L++
Sbjct: 68 ESVERAVDEAKAEFGGVDILVNNAGI---TRDNLLMRMKEEDWDRVIDTNLTGVFNLTKA 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + + S R+I + S+ G L GN
Sbjct: 125 VARPMMKQ--RSGRIINISSVVG----LMGNP 150
|
Length = 248 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 16/147 (10%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V++TGAS G+G A A+ALA G +++ R+ K E A + + DL S
Sbjct: 7 RVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YPGRHRWVVADLTS 64
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
V R ++VL+ NA V L E E + N L
Sbjct: 65 EAGREA-VLARAREMGGINVLINNAGVNHFALLEDQ-----DPEAIERLLALNLTAPMQL 118
Query: 204 SRLLLDDLKQSDYPSKRLII-VGSITG 229
+R LL L+ +++ VGS G
Sbjct: 119 TRALLPLLRA---QPSAMVVNVGSTFG 142
|
Length = 263 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERA-AKSAGMAKENYTIMHLDLA 146
V+ITGASSG+G ATA +AE G ++A + L A ++ G YT DL
Sbjct: 374 VLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTC---DLT 430
Query: 147 SLDSVRQFVDT-FRRSGRPLDVLVCNA 172
+V V G +D LV NA
Sbjct: 431 DSAAVDHTVKDILAEHGH-VDYLVNNA 456
|
Length = 657 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-09
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTI 140
K L +ITGAS+G+G A+A ALA+ G + + + + + KS G + Y
Sbjct: 2 KRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAY-- 59
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
H+D++ V+ F + +DVL NA V + + + F+ + + G
Sbjct: 60 -HVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGT 118
Query: 201 FLLSRLLL 208
FL++++LL
Sbjct: 119 FLMTKMLL 126
|
Length = 272 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-09
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGASSG+G ATA A AE G +++A R A+ + D+A
Sbjct: 3 VVITGASSGIGRATALAFAERGA-KVVLAARSAEALHELAREVRELGGEAIAVVADVADA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V + DT +D V NA V + E T E F N+LGH + L
Sbjct: 62 AQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDV-TPEEFRRVFDVNYLGHVYGTLAAL 120
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L++ LI VGS+ G
Sbjct: 121 PHLRRRGG--GALINVGSLLG 139
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
S++ITG SSG+G A+AL G W + CR + A + E LD A
Sbjct: 6 SILITGCSSGIGAYCARALQSDG-WRVFATCR------KEEDVAALEAEGLEAFQLDYAE 58
Query: 148 LDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTA---EGFELSVGTNHLG-HFL 202
+S+ V SG LD L N A P A E T FE N G H L
Sbjct: 59 PESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFE----ANFFGWHDL 114
Query: 203 LSRLL 207
R++
Sbjct: 115 TRRVI 119
|
Length = 277 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V ++TGAS G+G A LAE G +I++ R+ KAE A + T D
Sbjct: 4 KGKVALVTGASRGIGFGIASGLAEAGA-NIVINSRNEEKAEEAQQLIEKEGVEATAFTCD 62
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ ++++ V+ +D+LV NA + E F + + N G F +S
Sbjct: 63 VSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAE-EFPEAEWRDVIDVNLNGVFFVS 121
Query: 205 RLLLDDLKQSDYPSKRLIIVGSIT 228
+ + + + + ++I + S+
Sbjct: 122 QAVARHMIKQGHG--KIINICSLL 143
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 11/147 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG +SG+GLATAK L + G + + R+ A A K T + D+ S
Sbjct: 3 AIITGGASGIGLATAKLLLKKG-AKVAILDRNENPGAAAELQAINPKVKATFVQCDVTSW 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV-----YLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ + +D+L+ NA + YL K P +E ++ N G
Sbjct: 62 EQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLP----PPWEKTIDVNLTGVINT 117
Query: 204 SRLLLDDLKQSDY-PSKRLIIVGSITG 229
+ L L + ++ ++ +GS+ G
Sbjct: 118 TYLALHYMDKNKGGKGGVIVNIGSVAG 144
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
+ ITG+S GLGLA A+ L G +++ R +RAA + ++ D
Sbjct: 6 PMKRIFITGSSDGLGLAAARTLLHQGH-EVVLHARS---QKRAADAKAACPGAAGVLIGD 61
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLL 203
L+SL R+ D GR D ++ NA + P K P G V N L ++L
Sbjct: 62 LSSLAETRKLADQVNAIGR-FDAVIHNAGILSGPNRKTPD---TGIPAMVAVNVLAPYVL 117
Query: 204 SRLLLDDLKQSDYPSKRLIIVGS 226
+ L+ KRLI + S
Sbjct: 118 TALIR--------RPKRLIYLSS 132
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG + GLGLA A+ L G ++++ + + AA G + HLD+
Sbjct: 8 AIVTGGARGLGLAHARLLVAEGA-KVVLSDILDEEGQAAAAELG---DAARFFHLDVTDE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D VDT R + LDVLV NA + E T T E + + N G FL +R ++
Sbjct: 64 DGWTAVVDTAREAFGRLDVLVNNAGILTGGTVE-TTTLEEWRRLLDINLTGVFLGTRAVI 122
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+K++ S +I + SI G
Sbjct: 123 PPMKEAGGGS--IINMSSIEG 141
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-----NYTIMH- 142
VIITGAS G+G A A LA G + L A + A +A+E ++
Sbjct: 4 VIITGASEGIGRALAVRLARAG-------AQLVLAARNETRLASLAQELADHGGEALVVP 56
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D++ ++ + ++ R G +D+LV NA + + + + FE + N+LG
Sbjct: 57 TDVSDAEACERLIEAAVARFGG-IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAV 115
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
+ L LK S ++++V S+ G T
Sbjct: 116 YCTHAALPHLKASR---GQIVVVSSLAGLT 142
|
Length = 263 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
++TGA+ GLG A A+ALAE G + D L AE +A + DLA
Sbjct: 10 ALVTGAARGLGAAFAEALAEAG-ATVAFN--DGLAAEARELAAALEAAGGRAHAIAADLA 66
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SV++F D + LD LV NA + + + ++ + N G FL+ R
Sbjct: 67 DPASVQRFFDAAAAALGGLDGLVNNAGI-TNSKSATELDIDTWDAVMNVNVRGTFLMLRA 125
Query: 207 LLDDLKQSDYPSKRLIIVGSIT 228
L L+ S R++ + S T
Sbjct: 126 ALPHLRDS--GRGRIVNLASDT 145
|
Length = 250 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++T ASSG+GLA A+ALA G I A R+ ERAA + DL
Sbjct: 4 ALVTAASSGIGLAIARALAREGARVAICA-RNRENLERAASELRAGGAGVLAVVADLTDP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFLLSR 205
+ + + V+ + +D+LV NA F T E + + L + R
Sbjct: 63 EDIDRLVEKAGDAFGRVDILVNNA----GGPPPGPFAELTDEDWLEAFDLKLLSVIRIVR 118
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
+L +K+ + R++ + S+T
Sbjct: 119 AVLPGMKERGWG--RIVNISSLTV 140
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-08
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDL 145
+++ITG +SG+GLA AK E G II + A EN I D+
Sbjct: 7 TILITGGASGIGLALAKRFLELGNTVIIC-------GRNEERLAEAKAENPEIHTEVCDV 59
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFL 202
A DS R+ V+ ++ L+VL+ NA + T E + E + TN L
Sbjct: 60 ADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLL--DDAEQEIATNLLAPIR 117
Query: 203 LSRLLLDDLKQSD 215
L+ LLL L +
Sbjct: 118 LTALLLPHLLRQP 130
|
Length = 245 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 59/256 (23%), Positives = 91/256 (35%), Gaps = 68/256 (26%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---------------RAA 128
L +TGAS G+G A A LA+ G +++A + + +
Sbjct: 1 LSGKVAFVTGASRGIGRAIALRLAKAGA-TVVVAAKTASEGDNGSAKSLPGTIEETAEEI 59
Query: 129 KSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
++AG + I+ +D+ D VR V+ T + GR LD+LV NA + E T A+
Sbjct: 60 EAAG--GQALPIV-VDVRDEDQVRALVEATVDQFGR-LDILVNNAGAIWLSLVEDT-PAK 114
Query: 188 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247
F+L N G +LLS+ L + ++ I+ S + G+V
Sbjct: 115 RFDLMQRVNLRGTYLLSQAALPHMVKAGQG---HILNISPPLSLRPARGDVA-------- 163
Query: 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKV-CNMLTM---QEFHRRFHEETGIAFASL 303
Y K + LT+ E R GIA SL
Sbjct: 164 --------------------------YAAGKAGMSRLTLGLAAELRRH-----GIAVNSL 192
Query: 304 YPGCIATTGLFREHIP 319
+P T E
Sbjct: 193 WPSTAIETPAATELSG 208
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-08
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY---TI 140
L I+TGAS G+G A A+ LA+ G +++A + E A + KE
Sbjct: 3 LMGKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYD--INEEAAQELLEEIKEEGGDAIA 59
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLG 199
+ D++S + V V+ +D+LV NA + + T E ++ + N G
Sbjct: 60 VKADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTD--MTDEEWDRVIDVNLTG 117
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
LL+R L + + ++ + SI G
Sbjct: 118 VMLLTRYALPYMIKRKSGV--IVNISSIWGLI 147
|
Length = 247 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 146
++TGA+ G+G A A+A A G + +A D AERAA + +A + D+
Sbjct: 10 ALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVT 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
SV V + PLDVLV NA +
Sbjct: 69 DAASVAAAVAAAEEAFGPLDVLVNNAGI 96
|
Length = 260 |
| >gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+ +I GAS GLGL L E G W + R + G+ E LD+
Sbjct: 3 TALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDTALQALPGVHIEK-----LDMND 56
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 183
S+ Q + R G+ D+L NA + P +
Sbjct: 57 PASLDQLLQ--RLQGQRFDLLFVNAGISGPAHQSAA 90
|
Length = 225 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER---AAKSAGMAKEN 137
+ITGASSG+G ATA A A+ G W + + R E +S G+
Sbjct: 1 MSLNSMPRALITGASSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAA 59
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
Y+I DL++ +++ + DVL+ NA
Sbjct: 60 YSI---DLSNPEAIAPGIAELLEQFGCPDVLINNA 91
|
Length = 241 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-08
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+GLA AK LA G +++A D AE+ A++A + D+ S
Sbjct: 4 ALVTGGASGIGLAIAKRLAAEGA-AVVVADIDPEIAEKVAEAAQGGPRALGVQ-CDVTSE 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V+ + LD++V NA + + T + E + S+ N GHFL+SR
Sbjct: 62 AQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAET-SLEDWNRSMDINLTGHFLVSR 117
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 8e-08
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA+ G II AE + + D++
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDR 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV 174
+ V+ V+ P+D+LV NA +
Sbjct: 61 EDVKAVVEEIEEELGPIDILVNNAGI 86
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 8e-08
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+ +ITGAS G+G A A+ LA T +++ R AER + A T +DL
Sbjct: 5 TALITGASRGIGAAIARELAPT--HTLLLGGRP---AERLDELAA-ELPGATPFPVDLTD 58
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAV 174
+++ V+ R LDVLV NA V
Sbjct: 59 PEAIAAAVEQLGR----LDVLVHNAGV 81
|
Length = 227 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA+ G+G A + A G +++A R+ +A A S G ++ + +D++
Sbjct: 8 VLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG---PDHHALAMDVSDE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSR 205
+R+ + R +DVLV NA V PT T T E F N G +L++R
Sbjct: 64 AQIREGFEQLHREFGRIDVLVNNAGVTDPTMT-ATLDTTLEEFARLQAINLTGAYLVAR 121
|
Length = 520 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-07
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
I+TGASSG+G A+ A G +++ R+ AER A A + D++
Sbjct: 7 VAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEIL-AGGRAIAVAADVSD 64
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNA 172
V V R G +D+LV NA
Sbjct: 65 EADVEAAVAAALERFGS-VDILVNNA 89
|
Length = 251 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 71 PAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130
P + + +G L+ +ITG SG+G A A A+ G I + +L A
Sbjct: 31 PQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIV---YLDEHEDANE 86
Query: 131 AGMAKENYTIMHL----DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFT 185
E + L D++ + V+ T R GR LD+LV NAA P T
Sbjct: 87 TKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR-LDILVNNAAFQYPQQSLEDIT 145
Query: 186 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
AE + + TN +F +++ L LKQ +I GSITG
Sbjct: 146 AEQLDKTFKTNIYSYFHMTKAALPHLKQGS----AIINTGSITG 185
|
Length = 290 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 138
QGK L ITG +SG+GL TA+ G + + RD E A G E+
Sbjct: 5 QGKTAL------ITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG---ESA 54
Query: 139 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTN 196
++ D + + + + LD + NA A + P + F+ S TN
Sbjct: 55 LVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLED---WDEAMFDRSFNTN 111
Query: 197 HLGHFLLSRLLL 208
G + L + LL
Sbjct: 112 VKGPYFLIQALL 123
|
Length = 249 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V ITG GLG ATA LA G + + R A + G+ + I +DL
Sbjct: 9 VVAITGGFGGLGRATAAWLAARGA-RVALIGRG--AAPLSQTLPGVPADALRIGGIDLVD 65
Query: 148 LDSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ R+ VD R+ GR LD LV A ++ A+ ++ G N S+
Sbjct: 66 PQAARRAVDEVNRQFGR-LDALVNIAGAFVWGTIA-DGDADTWDRMYGVNVKTTLNASKA 123
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
L L S R++ +G+
Sbjct: 124 ALPALTAS--GGGRIVNIGAGAA 144
|
Length = 239 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TGAS G+G A A+ L + G +++ + + K T + DL+
Sbjct: 2 IILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELRPGLRVTTVKADLSDA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V Q ++ R+ D+L+ NA P +K + + N L+ LL
Sbjct: 62 AGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQKYFDLNLTSPVCLTSTLL 121
Query: 209 DDLKQSDYPSKRLII 223
K+ K+ ++
Sbjct: 122 RAFKK--RGLKKTVV 134
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 54/234 (23%), Positives = 84/234 (35%), Gaps = 60/234 (25%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS---AGMAKENYTIMHLD 144
IITG+SSG+G TA A G + RD + E +S AG++++ ++ D
Sbjct: 5 VAIITGSSSGIGAGTAILFARLGARLALTG-RDAERLEETRQSCLQAGVSEKKILLVVAD 63
Query: 145 LASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
L + + + T + GR LD+LV NA + E E ++ + N L
Sbjct: 64 LTEEEGQDRIISTTLAKFGR-LDILVNNAGILAKGGGE-DQDIEEYDKVMNLNLRAVIYL 121
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 263
++L + L ++ G I +N SS+
Sbjct: 122 TKLAVPHLIKTK---------GEI-----------------------------VNVSSVA 143
Query: 264 DGGDFDGAKAYKDSKV-------CNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
G F G Y SK C L + G+ S+ PG I T
Sbjct: 144 GGRSFPGVLYYCISKAALDQFTRCTALELAPK--------GVRVNSVSPGVIVT 189
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 90 IITGASSGLGLATAKALAETG-----KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
I+T + SG+G A A LA+ G WH D A+ A+ I LD
Sbjct: 6 IVTASDSGIGKACALLLAQQGFDIGITWH-----SDEEGAKETAEEVRSHGVRAEIRQLD 60
Query: 145 LASLDSVRQFVDTF-RRSGRPLDVLVCNA 172
L+ L Q +D +R GR +DVLV NA
Sbjct: 61 LSDLPEGAQALDKLIQRLGR-IDVLVNNA 88
|
Length = 256 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIM 141
L V+ITGAS G+G A A+A A G H+ + RD E A + +
Sbjct: 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVH 62
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA----AVYLPTAKEPTFTAEGFELSVGTNH 197
LDL+S ++ Q +D+LV NA L + + A G+EL V
Sbjct: 63 ALDLSSPEAREQLA----AEAGDIDILVNNAGAIPGGGLDDVDDAAWRA-GWELKV---- 113
Query: 198 LGHFLLSRLLLDDLK 212
G+ L+RL +K
Sbjct: 114 FGYIDLTRLAYPRMK 128
|
Length = 259 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 86 KGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V + TG +SGLGLAT + L G +I+ D + + + +D
Sbjct: 1 KGLVAVVTGGASGLGLATVERLLAQGAKVVIL---DLPNSPGETVAKLGDNCRFV--PVD 55
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLV-----CNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
+ S V+ + + LD++V AA + + E F+ + N +G
Sbjct: 56 VTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIG 115
Query: 200 HFLLSRLL 207
F + RL
Sbjct: 116 TFNVIRLA 123
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKSAGMAKENYTIMHL 143
V+ITGASSG+G A A+ A+ G +++ +A R D LKAE + + E L
Sbjct: 1 VLITGASSGIGRALAREFAKAG-YNVALAARRTDRLDELKAELLNPNPSVEVEI-----L 54
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D+ + + + LD+++ NA V T+ E + TN LG +
Sbjct: 55 DVTDEERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRET-IDTNLLGAAAI 113
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
L + L+++ S+
Sbjct: 114 LEAALPQFRAKG--RGHLVLISSVAA 137
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLK--AERAAKSAGMAKENYT 139
L +++TGASSG+G A A+ A G + +A R D L A+R ++ G A
Sbjct: 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAM---- 92
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
+ DL+ LD+V V + +D+L+ NA
Sbjct: 93 AVPCDLSDLDAVDALVADVEKRIGGVDILINNAG 126
|
Length = 293 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
SV+ITG SSG+GL A L G + ++ ACR + A M +T + LDL
Sbjct: 4 SVLITGCSSGIGLEAALELKRRG-YRVLAACR------KPDDVARMNSLGFTGILLDLDD 56
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+SV + D + L L NA VY P + T + + E TN G L+
Sbjct: 57 PESVERAADEVIALTDNRLYGLFNNAGFGVYGPLS---TISRQQMEQQFSTNFFGTHQLT 113
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
LLL + + R+++ S+ G
Sbjct: 114 MLLLPAMLP--HGEGRIVMTSSVMG 136
|
Length = 256 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHL--D 144
++TG S G+G A A LAE G +++ ++ K++ AA A + + + + D
Sbjct: 1 ALVTGGSRGIGKAIALRLAERG-ADVVI---NYRKSKDAAAEVAAEIEELGGKAVVVRAD 56
Query: 145 LASLDSVRQFVDTFR-RSGRPLDVLVCNAA--VYLPTAKEPTFTAEGFELSVGTNHLGHF 201
++ V + + R GR LDVLV NAA + P ++ T ++ + TN
Sbjct: 57 VSQPQDVEEMFAAVKERFGR-LDVLVSNAAAGAFRPLSE---LTPAHWDAKMNTNLKALV 112
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
++ +++ R++ + S G+ L +
Sbjct: 113 HCAQQAAKLMRERGG--GRIVAISS-LGSIRALPNYLA 147
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG SG+G A A+ G +I+ + E A + + D++
Sbjct: 2 VLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGKVHYYK-CDVSKR 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLLSRLL 207
+ V + ++ + +L+ NA V + K+ E E + N L HF ++
Sbjct: 61 EEVYEAAKKIKKEVGDVTILINNAGV--VSGKKLLELPDEEIEKTFEVNTLAHFWTTKAF 118
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L D+ + ++ ++ + S+ G
Sbjct: 119 LPDMLERNHGH--IVTIASVAG 138
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+G A A+ A G + + R + A +A + N + D++
Sbjct: 18 AVVTGGASGIGHAIAELFAAKGA-RVALLDRS---EDVAEVAAQLLGGNAKGLVCDVSDS 73
Query: 149 DSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SV V GR +D+LV +A V A + E ++ ++ N G FL+++
Sbjct: 74 QSVEAAVAAVISAFGR-IDILVNSAGV-ALLAPAEDVSEEDWDKTIDINLKGSFLMAQ 129
|
Length = 255 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGASSG+G ATA+ LA G + + A R K +A + LD+
Sbjct: 6 ALVTGASSGIGKATARRLAAQG--YTVYGA-----ARRVDKMEDLASLGVHPLSLDVTDE 58
Query: 149 DSVRQFVDT-FRRSGRPLDVLVCNA 172
S++ VDT GR +DVLV NA
Sbjct: 59 ASIKAAVDTIIAEEGR-IDVLVNNA 82
|
Length = 273 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-07
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+TGA+ G+G A A+ L + G ++A + + + LD+A
Sbjct: 1 VIVTGAAQGIGRAVARHLLQAG--ATVIA------LDLPFVLLLEYGDPLRLTPLDVADA 52
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+VR+ P+D LV A V P A +P + E +E + N G F L + +
Sbjct: 53 AAVREVCSRLLAEHGPIDALVNCAGVLRPGATDP-LSTEDWEQTFAVNVTGVFNLLQAVA 111
Query: 209 DDLKQSDYPSKRLIIVGSITGNT 231
+K D + ++ V S +
Sbjct: 112 PHMK--DRRTGAIVTVASNAAHV 132
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+I GAS G+G + G W +I RD A AA A A+ + LD+A
Sbjct: 4 VLIVGASRGIGREFVRQYRADG-WRVIATARD--AAALAALQALGAE----ALALDVADP 56
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLG 199
SV ++ G LD V A VY P T T E F+ + TN LG
Sbjct: 57 ASVAGL--AWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLG 106
|
Length = 222 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG SSG+G A AK AE G ++++ R K E A + +D+ +
Sbjct: 4 VIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAA 173
+ V++ V+ +D L+ NAA
Sbjct: 63 EDVQKMVEQIDEKFGRIDALINNAA 87
|
Length = 252 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAA-KSAGMAKENYTIMHLDLA 146
++TG S GLGL A+AL E G ++++ R + L+ A ++ G+ D+A
Sbjct: 16 LVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAA---DVA 71
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVY--LPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ + + T R G +D+LV NA P P E ++ + N G FLL
Sbjct: 72 DEADIERLAEETLERFG-HVDILVNNAGATWGAPAEDHPV---EAWDKVMNLNVRGLFLL 127
Query: 204 SRLLLDDLKQSDYPSK--RLIIVGSITGNTNTLAGNVP 239
S+ + K+S P R+I V S+ G L GN P
Sbjct: 128 SQAV---AKRSMIPRGYGRIINVASVAG----LGGNPP 158
|
Length = 259 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHII----MACRDFLKAERAAKSAGMAKENYTIMHLD 144
VI+TG S G+G +A E G + A L++E G K + D
Sbjct: 12 VIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCK----FVPCD 67
Query: 145 LASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ + ++ + T R GR +D LV NA + P +A+ F + N + +FL
Sbjct: 68 VTKEEDIKTLISVTVERFGR-IDCLVNNAGWHPPHQTTDETSAQEFRDLLNLNLISYFLA 126
Query: 204 SRLLLDDLKQS 214
S+ L L++S
Sbjct: 127 SKYALPHLRKS 137
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V +TGA+ G+G A A A E G +I + FL E + LD++
Sbjct: 11 VWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAFLTQEDYP---------FATFVLDVSDA 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V Q PLDVLV A + L + + E ++ + N G F L R
Sbjct: 61 AAVAQVCQRLLAETGPLDVLVNAAGI-LRMGATDSLSDEDWQQTFAVNAGGAFNLFR 116
|
Length = 252 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAA-KSAGMAKENYTIMHLDLA 146
++TGASSGLG A+ LA+ G +++A R + LK RA ++ G A ++ LD+
Sbjct: 13 LVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAH---VVSLDVT 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS-- 204
S++ V +D+LV N+ V T K T F+ TN G F ++
Sbjct: 69 DYQSIKAAVAHAETEAGTIDILVNNSGVS-TTQKLVDVTPADFDFVFDTNTRGAFFVAQE 127
Query: 205 ---RLLLDDLKQSD-YPSKRLIIVGSITG 229
R++ + P R+I + S+ G
Sbjct: 128 VAKRMIARAKGAGNTKPGGRIINIASVAG 156
|
Length = 258 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA++G G + + G H ++A + ER + +N I LD+ +
Sbjct: 3 VLVTGATAGFGECITRRFIQQG--HKVIATGR--RQERLQELKDELGDNLYIAQLDVRNR 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA--EGFELSVGTNHLGHFLLSRL 206
++ + + + R +DVLV NA + L EP A E +E + TN+ G ++R
Sbjct: 59 AAIEEMLASLPAEWRNIDVLVNNAGLAL--GLEPAHKASVEDWETMIDTNNKGLVYMTRA 116
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+L + + ++ +I +GS G+ GNV
Sbjct: 117 VLPGMVERNH--GHIINIGSTAGSWPYAGGNV 146
|
Length = 248 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V++TGA+ G+G A A+ALAE G + A R+F + + LD+A
Sbjct: 1 VLVTGAAQGIGYAVARALAEAG--ARVAAVDRNFEQLLELVADLRRYGYPFATYKLDVAD 58
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+V + V R P+DVLV N A L + + E ++ + N G F +S+ +
Sbjct: 59 SAAVDEVVQRLEREYGPIDVLV-NVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVSQAV 117
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
+K+ S ++ VGS N A NVP
Sbjct: 118 SPRMKRRR--SGAIVTVGS---N----AANVP 140
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 8/137 (5%)
Query: 69 ASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128
AS A SP + V ITG + G+G A A A G +++ RD AE A
Sbjct: 256 ASTAQA-PSPLAE---SPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRD---AEGAK 307
Query: 129 KSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEG 188
K A + + + D+ +V + LDVLV NA + +AE
Sbjct: 308 KLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAED 367
Query: 189 FELSVGTNHLGHFLLSR 205
F N G F +R
Sbjct: 368 FTRVYDVNLSGAFACAR 384
|
Length = 520 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
IITG +SG+G ATA+ A+ G +I D A A + + + +H D+
Sbjct: 8 IITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVA---AELGDPDISFVHCDVTVEA 64
Query: 150 SVRQFVD-TFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFL 202
VR VD R GR LD++ NA V P + E FE + N G FL
Sbjct: 65 DVRAAVDTAVARFGR-LDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFL 118
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 89 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V+ITG SGLGLATA LA+ G K ++ + L+A +AA ++ D++
Sbjct: 6 VLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADVSD 65
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
V +VD T + GR +D NA + F A+ F+ V N G F
Sbjct: 66 EAQVEAYVDATVEQFGR-IDGFFNNAGIEGKQNLTEDFGADEFDKVVSINLRGVFYGLEK 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+L +++ S ++ S+ G
Sbjct: 125 VLKVMREQG--SGMIVNTASVGG 145
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
L+ ++TGA+SG+G A A+ G +++A D +K RA +A + L
Sbjct: 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIA--D-IKPARARLAALEIGPAAIAVSL 59
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175
D+ DS+ + V +D+L NAA++
Sbjct: 60 DVTRQDSIDRIVAAAVERFGGIDILFNNAALF 91
|
Length = 257 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHII-----MACRDFLKAERAAKSAGMAKENYTIMHL 143
V+ITG S GLG A A LA G I+ M R A A A K +
Sbjct: 9 VLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGK--ALGLAF 66
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D+ + R +D LD+LV NA + A + E ++ + N G F +
Sbjct: 67 DVRDFAATRAALDAGVEEFGRLDILVNNAGIA-TDAAFAELSIEEWDDVIDVNLDGFFNV 125
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNT 231
++ L + ++ R++ + S+ G
Sbjct: 126 TQAALPPMIRAR-RGGRIVNIASVAGVR 152
|
Length = 249 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-06
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHL 143
G+ +ITG GLG A A+ LAE G +++ R A AA + T++
Sbjct: 1 GTYLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVAC 60
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
D+A D++ + PL ++ +AA
Sbjct: 61 DVADRDALAAVLAAIPAVEGPLTGVI-HAA 89
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGAS GLG A A++ A G ++ R AE A AG E + D+
Sbjct: 3 VLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAG---ERAIAIQADVRDR 59
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
D V+ ++ + P+D +V NA
Sbjct: 60 DQVQAMIEEAKNHFGPVDTIVNNA 83
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA+ G+GL A L G W +++A D ER +K A EN + +D+A
Sbjct: 14 LVTGAARGIGLGIAAWLIAEG-WQVVLADLD---RERGSKVAKALGENAWFIAMDVADEA 69
Query: 150 SVRQFV-DTFRRSGRPLDVLVCNAAVYLP 177
V V + + GR LD LVCNAA+ P
Sbjct: 70 QVAAGVAEVLGQFGR-LDALVCNAAIADP 97
|
Length = 255 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L + +ITGAS G+GLA A+ G +++ RD +A +
Sbjct: 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHG 64
Query: 143 L--DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
L D++ + R +D L +LV NA + +T + + TN
Sbjct: 65 LAADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNI-RKAAIDYTEDEWRGIFETNLFSA 123
Query: 201 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
F LSR LKQ S ++ +GS++G T+ +G
Sbjct: 124 FELSRYAHPLLKQHA--SSAIVNIGSVSGLTHVRSG 157
|
Length = 257 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGA SG G A+ A+ G +I + A+ A + A E + D+
Sbjct: 9 IVTGAGSGFGEGIARRFAQEGARVVIAD----INADGAERVAADIGEAAIAIQADVTKRA 64
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V V+ LD+LV NA + + E F+ N +L ++ L+
Sbjct: 65 DVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEV-DEEEFDRVFAVNVKSIYLSAQALV 123
Query: 209 DDLK 212
++
Sbjct: 124 PHME 127
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDLA 146
++TG++ GLG A+ALA G H+++ R+ E A ++AG A E + D+A
Sbjct: 15 LVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAE---ALAFDIA 70
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAV--YLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++V LD+LV N P A+ + T+ + LLS
Sbjct: 71 DEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAE---LDDAAIRALLETDLVAPILLS 127
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
RL +K+ Y R+I + SI G
Sbjct: 128 RLAAQRMKRQGY--GRIIAITSIAG 150
|
Length = 256 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGAS G+G A A+ LA G + A+ A + D+A
Sbjct: 9 IVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAA 68
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+V + D + +DVLV NA V +P F E F+ ++ TN G F++ R
Sbjct: 69 AVTRLFDAAETAFGRIDVLVNNAGV-MPLGTIADFDLEDFDRTIATNLRGAFVVLREAAR 127
Query: 210 DLKQ 213
L Q
Sbjct: 128 HLGQ 131
|
Length = 245 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHL-- 143
G+ ++TG GLGL A+ LAE G H+++ R E A A + + +
Sbjct: 1 GTYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVAC 60
Query: 144 DLASLDSVRQFVDTFRRSGRPLD 166
D++ D+VR + R G PL
Sbjct: 61 DVSDRDAVRALLAEIRADGPPLR 83
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL---DL 145
++TG + GLG A A+A AE G +++ R+ AE+ A + DL
Sbjct: 9 ALVTGGTQGLGAAIARAFAERGAAGLVICGRN---AEKGEAQAAELEALGAKAVFVQADL 65
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAA 173
+ ++ R+ V GR LD LV NAA
Sbjct: 66 SDVEDCRRVVAAADEAFGR-LDALV-NAA 92
|
Length = 260 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
V++TGA SG+G TA A A G ++ + D AER A+ +AG Y +D+
Sbjct: 318 VVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYR---VDV 373
Query: 146 ASLDSVRQFVDTFR-RSGRPLDVLVCNAAV 174
+ D++ F + R G P D++V NA +
Sbjct: 374 SDADAMEAFAEWVRAEHGVP-DIVVNNAGI 402
|
Length = 582 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYT 139
L + ++TG+S G+G TAK LA G H+++ R KA RA K + +
Sbjct: 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQ--KAPRANKVVAEIEAAGGRAS 59
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
+ DL +SV +DT R LD LV NA+
Sbjct: 60 AVGADLTDEESVAALMDTAREEFGGLDALVLNAS 93
|
Length = 248 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIM---ACRDFLKAERAAKSAGMAKENYTIMHLDL 145
I+TG S G+GLA A+ALAE G I+ A R KAE AK G+ + Y D+
Sbjct: 11 AIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGVKTKAYKC---DV 67
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+S +SV + ++ +D+L+ NA + + +T E + + N G F ++
Sbjct: 68 SSQESVEKTFKQIQKDFGKIDILIANAGITVHKPAL-DYTYEQWNKVIDVNLNGVFNCAQ 126
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
K+ S LII S++G
Sbjct: 127 AAAKIFKKQGKGS--LIITASMSG 148
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT---IMHLDL 145
++ITGA+ +G A KAL G +I+A + E+ + + + LD+
Sbjct: 5 ILITGAAGLIGKAFCKALLSAGA-RLILADINAPALEQLKEE--LTNLYKNRVIALELDI 61
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLL 203
S +S+++ ++++ +D+L+ NA F E + + N G FL
Sbjct: 62 TSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAFLC 121
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
S+ + K+ S +I + SI G
Sbjct: 122 SQAFIKLFKKQGKGS--IINIASIYG 145
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 84 LRKGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYT 139
L +I +TGAS G+G A A G +I+ R+ K + A G + +
Sbjct: 1 LLNDRIILVTGASDGIGREAALTYARYGA-TVILLGRNEEKLRQVADHINEEGGRQPQWF 59
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
I+ L + ++ +Q + LD ++ NA + + ++ N
Sbjct: 60 ILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVNA 119
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245
F+L++ LL L +SD S L+ S G +AN G
Sbjct: 120 TFMLTQALLPLLLKSDAGS--LVFTSSSVGRQ--------GRANWG 155
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLAS 147
++TG++SG+GL A+ALA G ++ D + E AK +++ DL+
Sbjct: 6 LVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGL-AAKHGVKVLYHGADLSK 64
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
++ V +R +D+LV NA + A F E ++ + N F +RL
Sbjct: 65 PAAIEDMVAYAQRQFGGVDILVNNAGIQH-VAPIEDFPTEKWDAIIALNLSAVFHTTRLA 123
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L +K+ + R+I + S+ G
Sbjct: 124 LPHMKKQGW--GRIINIASVHG 143
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG SG+G A + G ++ AE+ A ++ ++ D+ S
Sbjct: 9 ALITGGGSGIGRALVERFLAEGARVAVLE----RSAEKLASLRQRFGDHVLVVEGDVTSY 64
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV---YLPTAKEPTFT-AEGFELSVGTNHLGHFLL 203
++ VD T G+ LD V NA + P T F+ N G+ L
Sbjct: 65 ADNQRAVDQTVDAFGK-LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLG 123
Query: 204 SRLLLDDLKQS 214
++ L LK S
Sbjct: 124 AKAALPALKAS 134
|
Length = 263 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 12/149 (8%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY--- 138
K + + V+ITGAS+G+G ATA+A A G +++ R E ++
Sbjct: 4 KPIGRQVVVITGASAGVGRATARAFARRG-AKVVLLARG----EEGLEALAAEIRAAGGE 58
Query: 139 -TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+ D+A ++V+ D P+D V NA V + T E F +
Sbjct: 59 ALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMVTV-FGPFEDVTPEEFRRVTEVTY 117
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226
LG + L ++ D +I VGS
Sbjct: 118 LGVVHGTLAALRHMRPRDR--GAIIQVGS 144
|
Length = 334 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLAS 147
++ITGA+SG+G ATA+ L + G I + R+ + A DL++
Sbjct: 2 IVITGAASGIGAATAELLEDAGHTVIGIDLREADVIA-------------------DLST 42
Query: 148 LDSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + D R LD LV A V T L + N+ G L
Sbjct: 43 PEGRAAAIADVLARCSGVLDGLVNCAGVGGTT---------VAGLVLKVNYFGLRALMEA 93
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
LL L++ P ++V SI G
Sbjct: 94 LLPRLRKGHGP--AAVVVSSIAG 114
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
G V ++TGAS G+G A AK LA G ++ AE A + D
Sbjct: 2 AGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGKAIAVQAD 61
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ V + D ++ +D+LV NA V L T + E F+ N G F +
Sbjct: 62 VSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAET-SEEEFDRMFTVNTKGAFFVL 120
Query: 205 R 205
+
Sbjct: 121 Q 121
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 32/169 (18%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ G LG LAE G + + +A D + +E+AA A Y
Sbjct: 5 AVVIGGGQTLGAFLCHGLAEEG-YRVAVA--D-INSEKAANVAQEINAEYGEGMAYGFGA 60
Query: 149 DS---------VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
D+ R + F R +D+LV NA + A F F+ S+ N +G
Sbjct: 61 DATSEQSVLALSRGVDEIFGR----VDLLVYNAGI-AKAAFITDFQLGDFDRSLQVNLVG 115
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGN---TNTLAGNVPPKANLG 245
+FL +R RL+I I G N+ +G V K N G
Sbjct: 116 YFLCAR-----------EFSRLMIRDGIQGRIIQINSKSGKVGSKHNSG 153
|
Length = 259 |
| >gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++ G SSG+GLA A+A A G + +A R + AA++ G T LD+
Sbjct: 1 LVVGGSSGIGLALARAFAAEGA-RVTIASRSRDRLAAAARALGGGAPVRTAA-LDITDEA 58
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V F F +G P D +V AA P + ++ + G + ++R
Sbjct: 59 AVDAF---FAEAG-PFDHVVITAAD-TPGGPVRALPLAAAQAAMDSKFWGAYRVAR 109
|
Length = 230 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI-MHLDLAS 147
++TGA+ +G A A+ALA G +++ + K A N + + DL+
Sbjct: 3 ALVTGAAKRIGRAIAEALAAEGY-RVVVHYNRSEAEAQRLKDELNALRNSAVLVQADLSD 61
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ V R+ DVLV NA+ + PT EL G N +LL +
Sbjct: 62 FAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAEL-FGINLKAPYLLIQAF 120
Query: 208 LDDLKQS 214
L S
Sbjct: 121 ARRLAGS 127
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-05
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
L +ITGAS+G+G A A E G + +A R E+ A G + +
Sbjct: 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCC 65
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D++ V +D +D+ VCNA + + E F+ TN G FL
Sbjct: 66 DVSQHQQVTSMLDQVTAELGGIDIAVCNAGI-ITVTPMLDMPLEEFQRLQNTNVTGVFLT 124
Query: 204 SR 205
++
Sbjct: 125 AQ 126
|
Length = 253 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 48/194 (24%), Positives = 67/194 (34%), Gaps = 30/194 (15%)
Query: 71 PAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC----RDFLKAER 126
P S +G L+ +ITG SG+G A A A A G + + D AE
Sbjct: 11 PDFGEKSYKGSGKLKGKKALITGGDSGIGRAVAIAFAREGA-DVAINYLPEEED--DAEE 67
Query: 127 AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA 186
K ++ DL R V + LD+LV NAA P T
Sbjct: 68 TKKLIEEEGRKCLLIPGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESIEDITT 127
Query: 187 EGFELSVGTNHLGHFLLSRLLLDDLKQS-------------------DYPSKRLIIVGSI 227
E E + TN F L++ L LK+ DY + + G+I
Sbjct: 128 EQLEKTFRTNIFSMFYLTKAALPHLKKGSSIINTTSVTAYKGSPHLLDYAATK----GAI 183
Query: 228 TGNTNTLAGNVPPK 241
T L+ + K
Sbjct: 184 VAFTRGLSLQLAEK 197
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMAKENYTIMH 142
+ITG + +G A A+ L G + + + D L AE A G A +
Sbjct: 9 ALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAAELNALRPGSA----AALQ 63
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
DL D++ + V GR LD LV NA+ + PT + T ++ +N F
Sbjct: 64 ADLLDPDALPELVAACVAAFGR-LDALVNNASSFYPTPLG-SITEAQWDDLFASNLKAPF 121
Query: 202 LLSRLLLDDLKQS 214
LS+ L++
Sbjct: 122 FLSQAAAPQLRKQ 134
|
Length = 249 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGA+ G+G A A+ALA G +++A + AER AK + +D++ D
Sbjct: 10 IVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPD 68
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVY 175
S + D + +D LV NAA+Y
Sbjct: 69 SAKAMADATVSAFGGIDYLVNNAAIY 94
|
Length = 250 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Query: 52 REFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGK 111
E + R G + A A + G+ +ITG GLGL A+ LA G
Sbjct: 118 DELALRGGQRLVPRLVRAPAAALELAAAPG--GLDGTYLITGGLGGLGLLVARWLAARGA 175
Query: 112 WHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLASLDSVRQFVDTFRRSGRPLDVLV 169
H+++ R AA++A + + + D+ ++ + G PL V
Sbjct: 176 RHLVLLSRRGPAPRAAARAALLRAGGARVSVVRCDVTDPAALAALLAELAA-GGPLA-GV 233
Query: 170 CNAAVYLPTA 179
+AA L A
Sbjct: 234 IHAAGVLRDA 243
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHI-IMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
V+ITGAS G+G ATA A G W + I RD AE A + A ++ D+A
Sbjct: 4 VVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ V D + + LD LV NA + P+ A TN LG +L +R
Sbjct: 63 NEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAR 121
|
Length = 248 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA GLG A A A AE G +++A R + + A+ A ++ DLA +
Sbjct: 14 VVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPE 72
Query: 150 SVRQFVDT-FRRSGRPLDVLVCNAAVYLPTA---KEPTFTAEGFELSVGTNH 197
+ GR LD++V N +P A+ F +V T H
Sbjct: 73 ATAGLAGQAVEAFGR-LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAH 123
|
Length = 263 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119
VVR A A+P D P K ++TGA+ G+G A A+ LA G H++ C
Sbjct: 190 VVRVGA-ADAAPPADWDRPLAGKV-----ALVTGAARGIGAAIAEVLARDGA-HVV--CL 240
Query: 120 DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
D + A A +A + T + LD+ + D+ + + LD++V NA
Sbjct: 241 D-VPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIVVHNA 292
|
Length = 450 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TG ++ +G A A+AL G + + D A S G E + D+
Sbjct: 10 IVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG---ERARFIATDITDDA 65
Query: 150 SVRQFV-DTFRRSGRPLDVLVCNAAVYL 176
++ + V R GR +D+LV A YL
Sbjct: 66 AIERAVATVVARFGR-VDILVNLACTYL 92
|
Length = 261 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKEN 137
KTL + +TG + G+G TA+ LA G H+++A + AE A G +
Sbjct: 410 KTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRA- 467
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+ +D+ +V+ + +D++V NA + + E T T + ++L++
Sbjct: 468 -VALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEET-TLQEWQLNLDILA 525
Query: 198 LGHFLLSR 205
G+FL++R
Sbjct: 526 TGYFLVAR 533
|
Length = 676 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--------SAGMAKENYTIM 141
++TG S G+G ATA LA+ G + + + ++ + AA+ + G A ++
Sbjct: 5 LVTGGSRGIGRATALLLAQEG-YTVAV---NYQQNLHAAQEVVNLITQAGGKA----FVL 56
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D++ + V + PL LV NA + TAE + TN G+F
Sbjct: 57 QADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF 116
Query: 202 LLSR 205
L R
Sbjct: 117 LCCR 120
|
Length = 247 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+ITGA G+G A+ A G I++ + E+ A T + D+
Sbjct: 10 LITGALQGIGEGIARVFARHGANLILLDISP--EIEKLADELCGRGHRCTAVVADVRDPA 67
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAV 174
SV + + +D+LV NA V
Sbjct: 68 SVAAAIKRAKEKEGRIDILVNNAGV 92
|
Length = 263 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
+ITG + LG A A+ALA+ G + R+ K ++ AK + G LD
Sbjct: 8 AVITGGTGVLGGAMARALAQAGAKVAALG-RNQEKGDKVAKEITALGGRAIALAADVLDR 66
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----------KEPTF---TAEGFELS 192
ASL+ R+ + + G D+L+ A P A E F EG+E
Sbjct: 67 ASLERARE--EIVAQFGTV-DILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGWEFV 123
Query: 193 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N G FL S++ D+ + S +I + S+
Sbjct: 124 FDLNLNGSFLPSQVFGKDMLEQKGGS--IINISSMNA 158
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
SV++TGASSG+G A A ALA+ G ++ A R+ +R A G + LD+
Sbjct: 11 SVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGC-----EPLRLDVGD 64
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++R + D LV A + TAEGF+ + N G L++R
Sbjct: 65 DAAIRAALAAA----GAFDGLVNCAGIAS-LESALDMTAEGFDRVMAVNARGAALVAR 117
|
Length = 245 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 16/135 (11%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDL 145
+ITG SGLG A + G A L AE+ A+ + + D+
Sbjct: 6 VALITGGGSGLGRALVERFVAEG------AKVAVLDRSAEKVAELRADFGDAVVGVEGDV 59
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVY-----LPTAKEPTFTAEGFELSVGTNHLG 199
SL + V R G+ LD + NA ++ L E E F+ N G
Sbjct: 60 RSLADNERAVARCVERFGK-LDCFIGNAGIWDYSTSLVDIPEEKL-DEAFDELFHINVKG 117
Query: 200 HFLLSRLLLDDLKQS 214
+ L ++ L L +
Sbjct: 118 YILGAKAALPALYAT 132
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------FLKAE--RAAK 129
+L ++ ITGAS G+GLA A A G +I A AE AA
Sbjct: 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG 61
Query: 130 SAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNA-AVYL-PTAKEPTFTA 186
+ + D+ D V V R G +D+ V NA A+ L T P
Sbjct: 62 GQALP------LVGDVRDEDQVAAAVAKAVERFGG-IDICVNNASAINLTGTEDTP---M 111
Query: 187 EGFELSVGTNHLGHFLLSRLLLDDLKQSDYP 217
+ F+L N G FL+S+ L LK+S+ P
Sbjct: 112 KRFDLMQQINVRGTFLVSQACLPHLKKSENP 142
|
Length = 273 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG S GLG A A L E G H+I R + + K A N T LDL +
Sbjct: 4 VIITGTSQGLGEAIANQLLEKGT-HVISISRT--ENKELTKLAEQYNSNLTFHSLDLQDV 60
Query: 149 DSVRQFVDTFRRSGRPLDV----LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ + S + +V L+ NA + P +E +V N L +L+
Sbjct: 61 HELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILT 120
Query: 205 RLLLDDLKQSDYP-SKRLIIVGS 226
+ K D+ KR+I + S
Sbjct: 121 STFMKHTK--DWKVDKRVINISS 141
|
Length = 251 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMH 142
KG + +ITGAS G+G A AKA A+ G + L K A + G+ Y
Sbjct: 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV--- 65
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGH 200
D+ D V+ V + +D+LV NA + + P +AE F + +
Sbjct: 66 CDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI---IKRIPMLEMSAEDFRQVIDIDLNAP 122
Query: 201 FLLSRLLL 208
F++S+ ++
Sbjct: 123 FIVSKAVI 130
|
Length = 265 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIM 141
KG V ++TGASSG+G A A LA G ++++ R K + A + K +
Sbjct: 2 KGKVALVTGASSGIGKAIAIRLATAGA-NVVVNYRS--KEDAAEEVVEEIKAVGGKAIAV 58
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLG 199
D++ + V + + LD+LV NA + + T E + + N G
Sbjct: 59 QADVSKEEDVVALFQSAIKEFGTLDILVNNAGL---QGDASSHEMTLEDWNKVIDVNLTG 115
Query: 200 HFLLSRLLLDDLKQSD 215
FL +R + ++S
Sbjct: 116 QFLCAREAIKRFRKSK 131
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLA 146
++TGA G+G AT KALA+ G + + + A + +E I + +DL+
Sbjct: 10 ALVTGAGKGIGRATVKALAKAGARVVAV-------SRTQADLDSLVRECPGIEPVCVDLS 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
D+ + + S P+D+LV NAAV + T E F+ S N +S++
Sbjct: 63 DWDATEEALG----SVGPVDLLVNNAAVAILQPFL-EVTKEAFDRSFDVNVRAVIHVSQI 117
Query: 207 LLDDLKQSDYP 217
+ + P
Sbjct: 118 VARGMIARGVP 128
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAA-KSAGMAKENYTIM 141
R ++TGAS G+G A A+AL + G + A R D ++A A +SAG
Sbjct: 4 WRGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSAG--YPTLFPY 61
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLG 199
DL++ + + R + +DV + NA + P EP + EG++ N L
Sbjct: 62 QCDLSNEEQILSMFSAIRTQHQGVDVCINNAGLARP---EPLLSGKTEGWKEMFDVNVLA 118
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ +R +K+ + +I + S++G
Sbjct: 119 LSICTREAYQSMKERNVDDGHIININSMSG 148
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 33/140 (23%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+ GA+ +GLA A+ L+ G +I A R S+G +D+
Sbjct: 1 IIVIGATGTIGLAVAQLLSAHGH-EVITAGR----------SSG-------DYQVDITDE 42
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S++ F + G D +V A A T F+ + + LG L R L
Sbjct: 43 ASIKAL---FEKVG-HFDAIVSTAGD-AEFAPLAELTDADFQRGLNSKLLGQINLVRHGL 97
Query: 209 DDLKQSDYPSKRLIIVGSIT 228
L GSIT
Sbjct: 98 PYLNDG----------GSIT 107
|
Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
V++TG S G+G A+ E G II A KAE A +A + + DL+
Sbjct: 9 VLVTGGSRGIGRMIAQGFLEAGARVIISA----RKAEACADAAEELSAYGECIAIPADLS 64
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
S + + V LDVLV NA E F G++ + N F L++
Sbjct: 65 SEEGIEALVARVAERSDRLDVLVNNAGATWGAPLE-AFPESGWDKVMDINVKSVFFLTQA 123
Query: 207 LLDDLKQ--SDYPSKRLIIVGSITG 229
LL L+ + R+I +GSI G
Sbjct: 124 LLPLLRAAATAENPARVINIGSIAG 148
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA SG+G ATAK A G +++A RD AER A +A A D+ S
Sbjct: 8 AIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVA-AAIAAGGRAFARQGDVGSA 65
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV 174
++V VD R GR LDVLV NA
Sbjct: 66 EAVEALVDFVAARWGR-LDVLVNNAGF 91
|
Length = 252 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLA-- 146
++TGASSG+G ATA+ALA G I A R D L+A A K ++ LD+
Sbjct: 7 LVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAEGGKA--LVLELDVTDE 64
Query: 147 --SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
+V + V+ R LD+LV NA + L E T + + + TN LG
Sbjct: 65 QQVDAAVERTVEALGR----LDILVNNAGIMLLGPVEDADTTD-WTRMIDTNLLG 114
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYTIMHLDL 145
++TGA G+G A A+ L G + +I + AK G ++ + LD+
Sbjct: 6 LVTGAKRGIGSAIARELLNDG-YRVIAT---YFSGNDCAKDWFEEYGFTEDQVRLKELDV 61
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFL 202
+ + + P+D+LV NA + ++ F + + + + TN F
Sbjct: 62 TDTEECAEALAEIEEEEGPVDILVNNAGI----TRDSVFKRMSHQEWNDVINTNLNSVFN 117
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
+++ L + + Y R+I + S+ G
Sbjct: 118 VTQPLFAAMCEQGY--GRIINISSVNG 142
|
Length = 245 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 22/85 (25%), Positives = 34/85 (40%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG G+GL A+ALA G I D + + D+A L
Sbjct: 6 LVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLS 65
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAV 174
+ +D + + +D LV NA V
Sbjct: 66 AHEAMLDAAQAAWGRIDCLVNNAGV 90
|
Length = 256 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 8/145 (5%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
K + ++TGA+ G+G A A+ G ++ D A + G + + DL
Sbjct: 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--DARFVPVACDL 58
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
S+ + P+DVLV NA + T T + N +L
Sbjct: 59 TDAASLAAALANAAAERGPVDVLVANAGAARAASLHDT-TPASWRADNALNLEAAYLCVE 117
Query: 206 LLLDD-LKQSDYPSKRLIIVGSITG 229
+L+ LK+S ++ +GS+ G
Sbjct: 118 AVLEGMLKRS---RGAVVNIGSVNG 139
|
Length = 257 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 74 DVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM 133
S QGK + +ITGA G+G A A ALA+ G ++ + R + A+
Sbjct: 1 MAQSLQGK------NALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEA 53
Query: 134 AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFE 190
I D++ + V ++ + +D+L+ NA + +K F +E
Sbjct: 54 YGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGI----SKFGKFLELDPAEWE 109
Query: 191 LSVGTNHLGHFLLSRLLLDDLKQ 213
+ N +G + +R +L + +
Sbjct: 110 KIIQVNLMGVYYATRAVLPSMIE 132
|
Length = 239 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TG SSG+GLA K L G + D + ENY + D++S
Sbjct: 12 IIVTGGSSGIGLAIVKELLANG---ANVVNADIHGGDGQH-------ENYQFVPTDVSSA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLP----TAKEP----TFTAEGFELSVGTNHLGH 200
+ V V +D LV NA + +P K+P F+ N G
Sbjct: 62 EEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGV 121
Query: 201 FLLS 204
FL+S
Sbjct: 122 FLMS 125
|
Length = 266 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 77 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
S +GK L +TGA++GLG A LAE G I+ A R E + + +
Sbjct: 2 SLEGKVAL------VTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPS-ETQQQVEALGRR 53
Query: 137 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
++ DL+ +++++ VD+ +D+LV NA +
Sbjct: 54 FLSLT-ADLSDIEAIKALVDSAVEEFGHIDILVNNAGI 90
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHL--D 144
+IITGAS G+G ATA AE G C ++L+ AA++ + ++ + + D
Sbjct: 5 MIITGASRGIGAATALLAAERG----YAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAAD 60
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+A V + + R LD LV NA + + A TN +G FL +
Sbjct: 61 VADEADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCA 120
Query: 205 R 205
R
Sbjct: 121 R 121
|
Length = 248 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
++ ITGA+SG+G TA A G W + + D + AA +A + EN LD+
Sbjct: 2 AIFITGAASGIGRETALLFARNG-WFVGLYDID--EDGLAALAAELGAENVVAGALDVTD 58
Query: 148 LDSVRQFVDTF-RRSGRPLDVLVCNAAV 174
+ + F +G LD L NA V
Sbjct: 59 RAAWAAALADFAAATGGRLDALFNNAGV 86
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ GASSG+G ATA LA G + + + R K E LD+
Sbjct: 13 ALVAGASSGIGAATAIELAAAG-FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDP 71
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAA-VYLPTAKEPTFTAEGFELS-----VGTNHLGHFL 202
DSV+ FV + ++VLV A Y E + E FE VG N L +
Sbjct: 72 DSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHE--ISTEQFESQVQIHLVGANRLATAV 129
Query: 203 L 203
L
Sbjct: 130 L 130
|
Length = 274 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG SG G AK L G + ++ C A + + + + LD+
Sbjct: 3 VLITGCDSGFGNLLAKKLDSLG-FTVLAGCLT-KNGPGAKELRRVCSDRLRTLQLDVTKP 60
Query: 149 DSVRQFVDTFRRS--GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ +++ + + L LV NA + E + + + N G +++
Sbjct: 61 EQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKCMEVNLFGTVEVTKA 120
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
L L+++ R++ V S+ G
Sbjct: 121 FLPLLRRA---KGRVVNVSSMGG 140
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++ G +SG+ L A+A A G ++ +A R K + A A + D+
Sbjct: 12 VVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDY 70
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAA 173
+V P+DVLV AA
Sbjct: 71 AAVEAAFAQIADEFGPIDVLVSGAA 95
|
Length = 264 |
| >gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 146
V ITGASSG+G A A+ A G + + R D L+A A Y D+
Sbjct: 5 VFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAARVSVYA---ADVR 60
Query: 147 SLDSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
D++ F G P DV++ NA + + T E F + TN+ G
Sbjct: 61 DADALAAAAADFIAAHGLP-DVVIANAGISVGTLTEEREDLAVFREVMDTNYFG 113
|
Length = 257 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG S+GLG A A + +I D +A A+ A + D+
Sbjct: 10 VVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVE 69
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V + T + LDV++ NA + + E + + TN G FL SR
Sbjct: 70 SDVVNLIQTAVKEFGTLDVMINNAGIENAVPSH-EMSLEDWNKVINTNLTGAFLGSR 125
|
Length = 261 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
VI+TG +SG+G A + LAE G +I R+A A+E +
Sbjct: 10 VIVTGGASGIGAAISLRLAEEGAIPVIFG--------RSAPDDEFAEELRALQPRAEFVQ 61
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
+DL R V+ T + GR +D LV NA V E E F S+ N + ++
Sbjct: 62 VDLTDDAQCRDAVEQTVAKFGR-IDGLVNNAGVNDGVGLEA--GREAFVASLERNLIHYY 118
Query: 202 LLSRLLLDDLKQSDYPSKRLII-VGS---ITGNTNT 233
+++ L LK S+ I+ + S +TG T
Sbjct: 119 VMAHYCLPHLKA----SRGAIVNISSKTALTGQGGT 150
|
Length = 258 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+ITG SG+GLATA+ LA G +++ D + AA G + D+ D
Sbjct: 11 VITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGG-----LFVPTDVTDED 64
Query: 150 SVRQFVDT-FRRSGRPLDVLVCNAAVYLP 177
+V DT G +D+ NA + P
Sbjct: 65 AVNALFDTAAETYGS-VDIAFNNAGISPP 92
|
Length = 255 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA G+G A AK L E G + + + + A+ AA + D++ D
Sbjct: 6 LVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRD 64
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 196
V V + L+V+V NA V PT T T E F+ N
Sbjct: 65 QVFAAVRQVVDTFGDLNVVVNNAGV-APTTPIETITEEQFDKVYNIN 110
|
Length = 256 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA-AKSAGMAKENYTIMHL 143
G V I+TG ++GLG A ALA+ G II R + G T + +
Sbjct: 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEG---RKVTFVQV 70
Query: 144 DLASLDSVRQFVDT-FRRSGRPLDVLVCNA 172
DL +S + V G+ +D+LV NA
Sbjct: 71 DLTKPESAEKVVKEALEEFGK-IDILVNNA 99
|
Length = 258 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMA-CR-DFLKAERAAKSAGMAKENYTIMHLDLAS 147
++TG G+G A + LA+ G + + A C + +AE + G ++ ++ D++S
Sbjct: 4 LVTGGMGGIGTAICQRLAKDG--YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS 61
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFLLS 204
+S + V P+DVLV NA + ++ TF T E + + TN F ++
Sbjct: 62 FESCKAAVAKVEAELGPIDVLVNNAGI----TRDATFKKMTYEQWSAVIDTNLNSVFNVT 117
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
+ ++D + R+I + S+ G
Sbjct: 118 QPVID--GMRERGWGRIINISSVNG 140
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L + ++TGA+SG+G A LA G + +A + A A A +
Sbjct: 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVA 62
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+D+ + D+V +D +D+LV NA + + E ++ ++ + G FL
Sbjct: 63 MDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIE-NYSFADWKKMQAIHVDGAFL 121
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
++ L + + D +I +GS+
Sbjct: 122 TTKAALKHMYKDDR-GGVVIYMGSVHS 147
|
Length = 262 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG + G+G A A+A G ++ +A+ + + D+ +
Sbjct: 10 ALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVF------TIKCDVGNR 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V++ + + +DVLV NA + E F E + + N G + L
Sbjct: 64 DQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFE-EFDEEKYNKMIKINLNGAIYTTYEFL 122
Query: 209 DDLKQS 214
LK S
Sbjct: 123 PLLKLS 128
|
Length = 255 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 9e-04
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V+ITG SSG+G A A A G + + A A +A +A +T + LD+
Sbjct: 3 VVLITGCSSGIGRALADAFKAAG--YEVWA-----TARKAEDVEALAAAGFTAVQLDVND 55
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNA 172
++ + + LDVL+ NA
Sbjct: 56 GAALARLAEELEAEHGGLDVLINNA 80
|
Length = 274 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS---AGMAKENYTIMHLDLA 146
++TGAS G+G A AK LA+ G H+I++ R + A + AG E ++
Sbjct: 12 LVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEME 70
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF-----TAEG-FELSVGTNHLGH 200
+D++ F R GR LD+LV NAA P F T G F+ +V N G+
Sbjct: 71 QIDAL--FAHIRERHGR-LDILVNNAAA------NPYFGHILDTDLGAFQKTVDVNIRGY 121
Query: 201 FLLS 204
F +S
Sbjct: 122 FFMS 125
|
Length = 252 |
| >gnl|CDD|187658 cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 2, complex (x) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLD 144
+ +ITG GLGL A+ L E G H+++ R A A + + ++ D
Sbjct: 150 ATYLITGGLGGLGLLVAEWLVERGARHLVLTGRRAPSAAARQAIAALEEAGAEVVVLAAD 209
Query: 145 LASLDSVRQFVDTFRRSGRPL 165
++ D++ + R S PL
Sbjct: 210 VSDRDALAAALAQIRASLPPL 230
|
Ketoreductase, a module of the multidomain polyketide synthase, has 2 subdomains, each corresponding to a short-chain dehydrogenases/reductase (SDR) family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerizes but is composed of 2 subdomains, each resembling an SDR monomer. In some instances, as in porcine FAS, an enoyl reductase (a Rossman fold NAD binding domain of the MDR family) module is inserted between the sub-domains. The active site resembles that of typical SDRs, except that the usual positions of the catalytic asparagine and tyrosine are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular polyketide synthases are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) fatty acid synthase. In some instances, such as porcine FAS , an enoyl reductase module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consists of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthesis uses dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-ketoacyl reductase (KR), forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-enoyl reductase (ER). Polyketide syntheses also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes the KR domain of the Lyngbya majuscule Jam J, -K, and #L which are encoded on the jam gene cluster and are involved in the synthesis of the Jamaicamides (neurotoxins); Lyngbya majuscule Jam P belongs to a different KR_FAS_SDR_x subfamily. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 376 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG SSG+GLAT + L E G + + RD ER A + +E + L A
Sbjct: 11 AVVTGGSSGIGLATVELLLEAGA-SVAICGRD---EERLASAEARLREKFPGARLLAARC 66
Query: 149 D-----SVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D V F +D+LV NA + T + T A EL L +F
Sbjct: 67 DVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDEL-----ELKYFS 121
Query: 203 L---SRLLLDDLKQSDYPS 218
+ +R L L+ S S
Sbjct: 122 VINPTRAFLPLLRASAAAS 140
|
Length = 265 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 140
L V+ITGASSG+G ATA+A A G +++A RD + A+ +
Sbjct: 2 MGPLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLV 60
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
+ D+ D V+ G +DV V N V E T E E + TN +G+
Sbjct: 61 VPTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEET-PIEAHEQVIQTNLIGY 119
Query: 201 F 201
Sbjct: 120 M 120
|
Length = 330 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLA 146
++ITGA +G A KA+ E G +I A D +S G + +++ LD+
Sbjct: 7 ILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDIT 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT------NHLG- 199
+S+ +F+ +D V A Y P K + + F++S+ HLG
Sbjct: 66 DQESLEEFLSKSAEKYGKIDGAVNCA--Y-PRNK--DYGKKFFDVSLDDFNENLSLHLGS 120
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
FL S+ K+ + L+ + SI G
Sbjct: 121 SFLFSQQFAKYFKKQGGGN--LVNISSIYG 148
|
Length = 256 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+SG+GLA A+ L + G + C R K A D+ S+
Sbjct: 7 LVTGATSGIGLAIARRLGKEG--LRVFVCARGEEGLATTVKELREAGVEADGRTCDVRSV 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV-GTNHLGHFLLSRLL 207
+ V P+DVLV NA A+ L V TN G F +++ +
Sbjct: 65 PEIEALVAAAVARYGPIDVLVNNAG--RSGGGATAELADELWLDVVETNLTGVFRVTKEV 122
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L + + R+I + S G
Sbjct: 123 LKAGGMLERGTGRIINIASTGG 144
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDL 145
I+TG ++G+G A A LA+ G +I LK+E A A ++ + ++
Sbjct: 2 AIVTGGAAGIGKAIAGTLAKAGASVVIAD----LKSEGAEAVAAAIQQAGGQAIGLECNV 57
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
S + V + +LV NA P + T E FE + N F LS+
Sbjct: 58 TSEQDLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPMTEEDFEWAFKLNLFSAFRLSQ 117
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
L ++++ G+I N ++++
Sbjct: 118 LCAPHMQKAGG--------GAIL-NISSMSSENK 142
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 71 PAVDVSSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACR---DFLKAER 126
P + L+ G V ++TG + G+G A A+ALA +++ R + +
Sbjct: 189 PLPLPAGAAASAPLKPGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWK 248
Query: 127 AAKSAGMAKENYTIMH--LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV---YLPTAKE 181
A A + +++ D+ +VR+ ++ R +D ++ A V L K
Sbjct: 249 AQTLAALEALGARVLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKT 308
Query: 182 PTFTAEGFELSV-GTNHL 198
V G +L
Sbjct: 309 AEDFEAVLAPKVDGLLNL 326
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA+ G+G A ++L G + A RD A G + + LD+
Sbjct: 6 VLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYG---DKVVPLRLDVTDP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 190
+S++ + +DV++ NA V K T EG
Sbjct: 63 ESIK----AAAAQAKDVDVVINNAGV----LKPATLLEEGAL 96
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
+ + +V++TG S GLG A A+A A G ++ + + A A + +
Sbjct: 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQS---EDAAEALADELGDRAIALQA 59
Query: 144 DLASLDSVRQFVDTFR-RSGRPLDVLVCNAAV 174
D+ + V+ T G+P+ +V NA
Sbjct: 60 DVTDREQVQAMFATATEHFGKPITTVVNNALA 91
|
Length = 253 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+ITG SSG G A A+A G ++ R +A RA A + LD+ D
Sbjct: 8 LITGVSSGFGRALAQAALAAG-HRVVGTVRS--EAARADFEAL-HPDRALARLLDVTDFD 63
Query: 150 SVRQFVDTFRRSGRPLDVLVCNA 172
++ V + P+DVLV NA
Sbjct: 64 AIDAVVADAEATFGPIDVLVNNA 86
|
Length = 277 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTI 140
L+ + I+TG G+G AT + AE G +A D L E A K A + N
Sbjct: 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFD-LNREAAEKVAADIRAKGGNAQA 56
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
D+ DSV V ++ P+DVLV NA
Sbjct: 57 FACDITDRDSVDTAVAAAEQALGPVDVLVNNA 88
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA +G+G A A LA G +++A D A+ + D+
Sbjct: 6 AIVTGAGAGIGAACAARLAREGA-RVVVADIDGGAAQAVVAQIAGGALALRV---DVTDE 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V + LD+LV NA T ++ ++ N G FL R
Sbjct: 62 QQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTFLCCR 118
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 11/131 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+++G GLG A A G +++A R + + A + D+
Sbjct: 8 VVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDE 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLL 203
D V R GR +D LV NA + EL+V LG L
Sbjct: 67 DQCANLVALALERFGR-VDALVNNAFRVPSMKPLADADFAHWRAVIELNV----LGTLRL 121
Query: 204 SRLLLDDLKQS 214
++ L +S
Sbjct: 122 TQAFTPALAES 132
|
Length = 258 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 74 DVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG- 132
D+ S GK ++ITG++ G+G A LAE G II + AERA +
Sbjct: 3 DLFSLAGKN------ILITGSAQGIGFLLATGLAEYGAEIIIND----ITAERAELAVAK 52
Query: 133 MAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
+ +E ++ V ++ + P+DVL+ NA +
Sbjct: 53 LRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96
|
Length = 254 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++TG + +G + L G + R + LDL
Sbjct: 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLD--------RLRDGLDPLLSGVEFVVLDLTDR 54
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V + D ++ AA + AE + N G + LL
Sbjct: 55 DLVDELAKGVP------DAVIHLAAQSSVPDSNASDPAEFLD----VNVDG----TLNLL 100
Query: 209 DDLKQSDYPSKRLIIVGSI 227
+ + KR + S+
Sbjct: 101 EAARA--AGVKRFVFASSV 117
|
Length = 314 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.004
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
L+ I+TG S G+G A L E G I +F K +Y +
Sbjct: 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVI-----NF-----DIKEPSYNDVDY--FKV 51
Query: 144 DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D+++ + V + +D + GR +D+LV NA + A E + + N G FL
Sbjct: 52 DVSNKEQVIKGIDYVISKYGR-IDILVNNAGIESYGAIHAVEEDEWDRI-INVNVNGIFL 109
Query: 203 LSRLLLDDLKQSDYPS 218
+S+ + + + D
Sbjct: 110 MSKYTIPYMLKQDKGV 125
|
Length = 258 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 399 | |||
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 100.0 | |
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 100.0 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 100.0 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 100.0 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 100.0 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 100.0 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 100.0 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 100.0 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 100.0 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 100.0 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 100.0 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 100.0 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 100.0 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 100.0 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 100.0 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 100.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 100.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 100.0 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 100.0 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 100.0 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.98 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.98 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.97 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.97 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.97 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.97 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.97 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.97 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.97 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.97 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.97 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.97 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.96 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.96 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.96 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.96 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.95 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.95 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.95 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.92 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.92 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.91 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.9 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.89 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.88 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.87 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.86 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.85 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.84 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.84 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.83 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.82 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.82 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.81 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.81 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.8 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.79 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.79 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.78 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.78 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.77 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.76 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.76 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.74 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.74 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.73 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.72 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.72 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.72 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.71 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.71 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.69 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.69 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.69 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.67 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.66 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.66 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.64 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.64 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.62 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.61 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.59 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.59 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.59 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.58 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.57 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.54 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.53 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.53 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.5 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.49 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.49 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.49 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.48 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.4 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.38 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.38 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.37 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.34 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.3 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.29 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.26 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.25 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.25 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.22 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.19 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.19 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.18 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 99.15 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.14 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.12 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.1 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 99.1 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.06 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.03 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.02 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.02 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.99 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 98.96 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 98.89 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.87 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.74 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 98.72 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.68 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.64 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.57 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 98.46 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.41 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.4 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 98.32 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 98.31 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 98.3 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.26 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.26 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.08 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 98.07 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.05 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.03 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.03 | |
| PLN00106 | 323 | malate dehydrogenase | 97.95 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.9 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.87 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.74 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.74 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.69 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 97.68 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.5 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.45 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.35 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.27 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.24 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.21 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.21 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.12 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.11 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.09 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.07 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.03 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.98 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.97 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.96 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.92 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.9 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.81 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.8 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.79 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.77 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.77 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 96.77 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.76 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.7 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.7 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.69 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.62 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.59 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.51 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.48 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.47 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.44 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.39 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.38 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.38 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 96.37 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.36 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.32 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.26 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.24 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.23 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.22 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 96.22 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.22 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.2 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 96.19 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.18 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.15 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.12 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.12 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.1 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.09 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.07 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.05 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.01 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.0 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.91 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.83 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.83 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.8 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.8 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 95.79 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 95.74 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 95.71 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.7 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 95.63 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.59 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.59 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.57 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.5 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.46 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.46 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.46 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.45 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.44 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.39 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.36 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.35 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.23 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.22 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.19 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.18 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.16 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.16 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.16 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.09 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.06 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 95.06 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.03 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 94.98 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 94.96 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.95 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 94.89 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.89 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 94.88 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.87 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.84 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 94.84 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.83 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.83 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.82 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 94.77 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.72 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.71 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.71 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.63 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.61 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 94.59 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.54 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.48 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.48 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.47 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.36 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 94.31 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.3 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.3 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 94.18 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.12 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.08 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.07 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 94.07 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 94.04 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.98 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 93.96 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.94 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 93.94 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 93.92 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.91 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 93.89 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 93.88 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.88 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.84 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 93.84 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 93.79 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 93.79 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 93.77 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 93.75 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 93.72 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 93.69 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.67 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 93.66 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.61 | |
| PLN02928 | 347 | oxidoreductase family protein | 93.59 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.58 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 93.56 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 93.53 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 93.51 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 93.48 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 93.44 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 93.42 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 93.39 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.34 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 93.33 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 93.33 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.31 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.3 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 93.28 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 93.22 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 93.21 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.18 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 93.18 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 93.04 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.03 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.03 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 92.99 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 92.9 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 92.86 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 92.85 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 92.8 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.8 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 92.62 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 92.59 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.58 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 92.58 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 92.54 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 92.52 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 92.47 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 92.43 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 92.37 |
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-46 Score=307.43 Aligned_cols=243 Identities=22% Similarity=0.220 Sum_probs=215.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+..|.++||||++|||+++++.|+++|| +|++++++...+++.+..+..+ ++...+.||+++.++++..+++..+.+
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Ga-rv~v~dl~~~~A~ata~~L~g~-~~h~aF~~DVS~a~~v~~~l~e~~k~~ 88 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGA-RVAVADLDSAAAEATAGDLGGY-GDHSAFSCDVSKAHDVQNTLEEMEKSL 88 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCc-EEEEeecchhhHHHHHhhcCCC-CccceeeeccCcHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999996 9999999988888888887654 356789999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++++||||||+. .+..+..+..++|++++.+|+.|.|+++|++.+.|...+..+++|||+||+.|..|.
T Consensus 89 g~psvlVncAGIt-rD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN--------- 158 (256)
T KOG1200|consen 89 GTPSVLVNCAGIT-RDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN--------- 158 (256)
T ss_pred CCCcEEEEcCccc-cccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc---------
Confidence 9999999999997 566777899999999999999999999999999866555445799999999998744
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
-++..|++||.++.+|++..|+|+ +++|||||+|+||+|.|||.. ..++ .
T Consensus 159 --------------------------~GQtnYAAsK~GvIgftktaArEl-a~knIrvN~VlPGFI~tpMT~-~mp~--~ 208 (256)
T KOG1200|consen 159 --------------------------FGQTNYAASKGGVIGFTKTAAREL-ARKNIRVNVVLPGFIATPMTE-AMPP--K 208 (256)
T ss_pred --------------------------ccchhhhhhcCceeeeeHHHHHHH-hhcCceEeEeccccccChhhh-hcCH--H
Confidence 478899999999999999999999 667999999999999999553 3333 3
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+.......|++|+..+||+|+.++||+++.+.|++|+-+.++|.
T Consensus 209 v~~ki~~~iPmgr~G~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 209 VLDKILGMIPMGRLGEAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred HHHHHHccCCccccCCHHHHHHHHHHHhccccccccceeEEEecc
Confidence 444566677899999999999999999999999999999999884
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=336.76 Aligned_cols=307 Identities=93% Similarity=1.408 Sum_probs=236.9
Q ss_pred EEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEE
Q 015844 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 169 (399)
Q Consensus 90 lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv 169 (399)
|||||++|||+++|+.|+++|+++|++++|+.++.+++.+++...+.++.++.+|++|.++++++++++.+.++++|+||
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 69999999999999999999933899999998888777777755456788899999999999999999998889999999
Q ss_pred ecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccccc
Q 015844 170 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 249 (399)
Q Consensus 170 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 249 (399)
||||+.....++.+.+.++|+++|++|+.|++++++.++|.|++++..+|+||++||.++..+...+..++..+++++..
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 160 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhhh
Confidence 99998644334557789999999999999999999999999987642137999999998764222122222233444433
Q ss_pred ccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc-cCCCCccccchhhhhhchhh
Q 015844 250 FAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRLLFPPF 328 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v-~T~~~~~~~~~~~~~~~~~~ 328 (399)
+..+..+.+...+.....+.+..+|++||+|+..+++.+++++....||+|++|+||+| .|++. +...+........+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~-~~~~~~~~~~~~~~ 239 (308)
T PLN00015 161 LAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLF-REHIPLFRLLFPPF 239 (308)
T ss_pred hhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccc-ccccHHHHHHHHHH
Confidence 33332222211112223456788999999999999999999984336999999999999 67644 33222222222334
Q ss_pred HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHHHHHhc
Q 015844 329 QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVG 397 (399)
Q Consensus 329 ~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~ 397 (399)
...+.+++.+||++|+.+++++++...+.+|+||.++|...+++..+++.+.|++++++||++|++++|
T Consensus 240 ~~~~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~~~~g~~~~~~~~~~~~a~d~~~~~~lw~~~~~~~~ 308 (308)
T PLN00015 240 QKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNGGSASFENQLSQEASDAEKAKKVWEISEKLVG 308 (308)
T ss_pred HHHHhcccccHHHhhhhhhhhccccccCCCccccccCCcccccccCcChhhcCHHHHHHHHHHHHHhcC
Confidence 455566788999999999999999888899999999986555556888999999999999999999975
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=330.39 Aligned_cols=312 Identities=78% Similarity=1.223 Sum_probs=237.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+|++|||||++|||+++|+.|+++|+++|++++|+.++.+++.+++...+.++.++.+|++|.++++++++++.+.+++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999339999999988887777777655567888999999999999999999888899
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+..+.....+.+.++|++++++|+.|++++++.++|.|++.+...|+||++||.++......+..++..++
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 99999999986433334466889999999999999999999999999876322379999999988653333333333334
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc-cCCCCccccchhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRL 323 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v-~T~~~~~~~~~~~~~ 323 (399)
+++..+..++... ....+..++.++.+|++||+|+..+++.|++++..+.||+|++|+||+| +|++. +...+....
T Consensus 162 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~-~~~~~~~~~ 238 (314)
T TIGR01289 162 GDLSGLAAGFKAP--IAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLF-REHVPLFRT 238 (314)
T ss_pred cccccccccCCCc--ccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccc-ccccHHHHH
Confidence 4333222211111 1122234566788999999999999999999984346899999999999 68744 322222222
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHHHHHhcCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 399 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~~~ 399 (399)
+...+.+....++.+|++.|+.+++++.++....+|.||.+++...+....+++.+.|++++++||++|++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~~~ 314 (314)
T TIGR01289 239 LFPPFQKYITKGYVSEEEAGERLAQVVSDPKLKKSGVYWSWGNRQESFVNQLSEEVSDDSKASKMWDLSEKLVGLA 314 (314)
T ss_pred HHHHHHHHHhccccchhhhhhhhHHhhcCcccCCCceeeecCCcccccccCCChhhcCHHHHHHHHHHHHHHhccC
Confidence 3333444444567899999999999998877667999998876533323467888999999999999999999873
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=302.40 Aligned_cols=229 Identities=24% Similarity=0.312 Sum_probs=198.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++|||||+|||.++|+.|++.|+ +|++++|+.++++++.+++.. ..+..+..||+|.++++.+++.+.+++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~~ 79 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGA--GAALALALDVTDRAAVEAAIEALPEEF 79 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHhh
Confidence 56789999999999999999999999995 999999999999999999865 678999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++||+||||||.+.. .++.+.+.++|++++++|+.|.++.+++++|.|.+++ .|.|||+||++|..
T Consensus 80 g~iDiLvNNAGl~~g-~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~--~G~IiN~~SiAG~~----------- 145 (246)
T COG4221 80 GRIDILVNNAGLALG-DPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK--SGHIINLGSIAGRY----------- 145 (246)
T ss_pred CcccEEEecCCCCcC-ChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC--CceEEEeccccccc-----------
Confidence 999999999999854 8899999999999999999999999999999999987 58999999999984
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
++++...|+++|+++..|++.|..|+ ..++|||.+|+||.|.|+.+..-... .
T Consensus 146 ------------------------~y~~~~vY~ATK~aV~~fs~~LR~e~-~g~~IRVt~I~PG~v~~~~~s~v~~~--g 198 (246)
T COG4221 146 ------------------------PYPGGAVYGATKAAVRAFSLGLRQEL-AGTGIRVTVISPGLVETTEFSTVRFE--G 198 (246)
T ss_pred ------------------------cCCCCccchhhHHHHHHHHHHHHHHh-cCCCeeEEEecCceecceecccccCC--c
Confidence 77889999999999999999999999 57799999999999987633221111 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.....-..+.....++|+|+|+.|+|.++.|..
T Consensus 199 ~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 199 DDERADKVYKGGTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred hhhhHHHHhccCCCCCHHHHHHHHHHHHhCCCc
Confidence 111111112233478999999999999998866
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=327.07 Aligned_cols=274 Identities=16% Similarity=0.109 Sum_probs=214.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh----------HHHHHHHHHhccCCCcEEEEEecCCCHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----------LKAERAAKSAGMAKENYTIMHLDLASLDSV 151 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~----------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v 151 (399)
..+++|++|||||++|||+++|+.|++.|+ +|++++|+. +.++++.+.+...+.++.+++||++|++++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQV 82 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 457899999999999999999999999996 999999973 345555666655566788999999999999
Q ss_pred HHHHHHHHHcCCCccEEEecC-cccC---CCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 152 RQFVDTFRRSGRPLDVLVCNA-AVYL---PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~nA-g~~~---~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
+++++++.+.+|+||+||||| |+.. ...++.+.+.++|++++++|+.++++++++++|.|.+++ +|+||++||.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~--~g~IV~isS~ 160 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP--GGLVVEITDG 160 (305)
T ss_pred HHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC--CcEEEEECCc
Confidence 999999999999999999999 7531 124566778899999999999999999999999998754 4899999997
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCc
Q 015844 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (399)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~ 307 (399)
.+.... .+.++...|++||+|+.+|+++|+.|+ ++.||+||+|+||+
T Consensus 161 ~~~~~~--------------------------------~~~~~~~~Y~asKaal~~lt~~La~el-~~~gIrVn~v~PG~ 207 (305)
T PRK08303 161 TAEYNA--------------------------------THYRLSVFYDLAKTSVNRLAFSLAHEL-APHGATAVALTPGW 207 (305)
T ss_pred cccccC--------------------------------cCCCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEecCCc
Confidence 654210 012345679999999999999999999 67799999999999
Q ss_pred ccCCCCccccchhhhhhchhhHHHH-hcCCCChHHHHHHHHHhhcCCC-CCCCceEEccCCCCcccccccCcccCCHHHH
Q 015844 308 IATTGLFREHIPLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWNKDSASFENQLSQEASDVEKA 385 (399)
Q Consensus 308 v~T~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pee~a~~v~~l~~~~~-~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~ 385 (399)
|+|++.................+.+ .++..+|+|+|+.++||++++. .+++|+++..+. ...+.....+++.+
T Consensus 208 v~T~~~~~~~~~~~~~~~~~~~~~p~~~~~~~peevA~~v~fL~s~~~~~~itG~~l~~~~-----~~~~~~~~~~~~~~ 282 (305)
T PRK08303 208 LRSEMMLDAFGVTEENWRDALAKEPHFAISETPRYVGRAVAALAADPDVARWNGQSLSSGQ-----LARVYGFTDLDGSR 282 (305)
T ss_pred cccHHHHHhhccCccchhhhhccccccccCCCHHHHHHHHHHHHcCcchhhcCCcEEEhHH-----HHHhcCccCCCCCC
Confidence 9998532211000011111122334 3556789999999999999885 479999998655 23445555677889
Q ss_pred HHHHHHHHHHh
Q 015844 386 RKVWEISEKLV 396 (399)
Q Consensus 386 ~~lw~~~~~~~ 396 (399)
++||++++++-
T Consensus 283 ~~~~~~~~~~~ 293 (305)
T PRK08303 283 PDAWRYLVEVQ 293 (305)
T ss_pred Ccchhhhhhcc
Confidence 99999999874
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=315.16 Aligned_cols=313 Identities=59% Similarity=1.016 Sum_probs=231.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++++.|+++|+ +|++++|+.++.++..+++...+.++.++.+|++|.++++++++++.+.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999995 99999999888887777775445678899999999999999999988878
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC--CC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV--PP 240 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~--~~ 240 (399)
+++|+||||||+........+.+.++|+.++++|+.|++++++.++|.|++++.+.++||++||..+..+...+.. +.
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~ 161 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPA 161 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCC
Confidence 8999999999986432333466889999999999999999999999999886532369999999887542211111 11
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc-CCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~-T~~~~~~~~~ 319 (399)
...++++..+..++.. .....+..++.+...|+.||++++.+++.+++++....||+|++|+||+|. |+ +.+....
T Consensus 162 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~-~~~~~~~ 238 (322)
T PRK07453 162 PADLGDLSGFEAGFKA--PISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP-LFRNTPP 238 (322)
T ss_pred ccchhhhhcchhcccc--cccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc-ccccCCH
Confidence 1122222211111000 001112234566789999999999999999999844469999999999995 65 4443333
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCc----ccccccCcccCCHHHHHHHHHHHHHH
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA----SFENQLSQEASDVEKARKVWEISEKL 395 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~----~~~~~~~~~~~~~~~~~~lw~~~~~~ 395 (399)
....+...+.+....+..++++.++.+++++.++....+|.||.++.... .....+++.+.|++++++||++|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~lw~~s~~~ 318 (322)
T PRK07453 239 LFQKLFPWFQKNITGGYVSQELAGERVAQVVADPEFAQSGVHWSWGNRQKKDRKAFSQELSDRATDDDKARRLWDLSAKL 318 (322)
T ss_pred HHHHHHHHHHHHHhhceecHHHHhhHHHHhhcCcccCCCCceeecCCCCCcCccccccccchhhcCHHHHHHHHHHHHHH
Confidence 22233333333334456789999999999998887778999998644211 11135678899999999999999999
Q ss_pred hcCC
Q 015844 396 VGLA 399 (399)
Q Consensus 396 ~~~~ 399 (399)
+++.
T Consensus 319 ~~~~ 322 (322)
T PRK07453 319 VGLA 322 (322)
T ss_pred hCcC
Confidence 9863
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=312.85 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=205.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++... +.++.++.+|++|+++++++++++.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~- 81 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK- 81 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-
Confidence 457899999999999999999999999995 9999999988887777766433 4578899999999999999999986
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|++|++|||||... ..++.+.+.++|++++++|+.++++++++++|.|++++ .|+||++||.++..
T Consensus 82 ~~g~iD~lv~nag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~--~g~Ii~isS~~~~~--------- 149 (263)
T PRK08339 82 NIGEPDIFFFSTGGPK-PGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG--FGRIIYSTSVAIKE--------- 149 (263)
T ss_pred hhCCCcEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcCccccC---------
Confidence 5889999999999863 45677889999999999999999999999999998765 47999999988763
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.+....|+++|+|+++|++.++.|+ +++|||||+|+||+|+|++......
T Consensus 150 --------------------------~~~~~~~y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~~~~~~ 202 (263)
T PRK08339 150 --------------------------PIPNIALSNVVRISMAGLVRTLAKEL-GPKGITVNGIMPGIIRTDRVIQLAQDR 202 (263)
T ss_pred --------------------------CCCcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccHHHHHHHHhh
Confidence 34567789999999999999999999 6779999999999999985422100
Q ss_pred ------hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 ------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............|.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG 257 (263)
T PRK08339 203 AKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGG 257 (263)
T ss_pred hhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHHHhcchhcCccCceEEECCC
Confidence 0001111222345678899999999999999999888999999999984
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=313.63 Aligned_cols=241 Identities=16% Similarity=0.152 Sum_probs=195.5
Q ss_pred cccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChH---HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 82 ~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
|.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+.. .+++..+++ +.. .+++||++|.++++++++
T Consensus 1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQEL---GSD-YVYELDVSKPEHFKSLAE 75 (274)
T ss_pred CccCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhc---CCc-eEEEecCCCHHHHHHHHH
Confidence 35789999999997 8999999999999996 9999999853 222222222 333 678999999999999999
Q ss_pred HHHHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
++.+++|++|+||||||+... ..++.+.+.++|+++|++|+.|++++++.++|.|.+ +|+||++||.++..
T Consensus 76 ~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~----~g~Iv~isS~~~~~-- 149 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND----GASVLTLSYLGGVK-- 149 (274)
T ss_pred HHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc----CCcEEEEecCCCcc--
Confidence 999999999999999998532 245678899999999999999999999999999975 36999999987763
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.+.+..|++||+|+.+|++.|+.|+ .++||+||+|+||+|+|++.
T Consensus 150 ---------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~ 195 (274)
T PRK08415 150 ---------------------------------YVPHYNVMGVAKAALESSVRYLAVDL-GKKGIRVNAISAGPIKTLAA 195 (274)
T ss_pred ---------------------------------CCCcchhhhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHH
Confidence 34567789999999999999999999 67799999999999999743
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.................|.+++.+|+|+|+.++||+++...+++|+.+.+||..
T Consensus 196 -~~~~~~~~~~~~~~~~~pl~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG~ 249 (274)
T PRK08415 196 -SGIGDFRMILKWNEINAPLKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAGY 249 (274)
T ss_pred -hccchhhHHhhhhhhhCchhccCCHHHHHHHHHHHhhhhhhcccccEEEEcCcc
Confidence 211111110011112346678899999999999999998889999999999853
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=312.26 Aligned_cols=242 Identities=13% Similarity=0.100 Sum_probs=195.3
Q ss_pred ccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.|++|++|||||++ |||+++|+.|+++|+ +|++++|+....+...+.....+. ..+++||++|.++++++++++.+
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHHHHHHH
Confidence 36899999999997 999999999999996 899999875433332222222232 35789999999999999999999
Q ss_pred cCCCccEEEecCcccCCC---CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
.+|++|+||||||+.... .++.+++.++|++++++|+.++++++++++|+|.+ +|+||++||.++..
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~----~G~Iv~isS~~~~~------ 151 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD----GGSMLTLTYGGSTR------ 151 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CceEEEEcCCCccc------
Confidence 999999999999986321 35667899999999999999999999999999974 37999999987753
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.+++..|++||+|+.+|++.|+.|+ ++.|||||+|+||+|+|++. ...
T Consensus 152 -----------------------------~~~~~~~Y~asKaAl~~l~r~la~el-~~~gIrVn~v~PG~i~T~~~-~~~ 200 (271)
T PRK06505 152 -----------------------------VMPNYNVMGVAKAALEASVRYLAADY-GPQGIRVNAISAGPVRTLAG-AGI 200 (271)
T ss_pred -----------------------------cCCccchhhhhHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccc-ccC
Confidence 34567789999999999999999999 67799999999999999853 211
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+............|.+++.+|||+|+.++||+++.+.+++|+.+.+||.
T Consensus 201 ~~~~~~~~~~~~~~p~~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG 250 (271)
T PRK06505 201 GDARAIFSYQQRNSPLRRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSG 250 (271)
T ss_pred cchHHHHHHHhhcCCccccCCHHHHHHHHHHHhCccccccCceEEeecCC
Confidence 11101111112234667889999999999999999888999999999985
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=307.66 Aligned_cols=240 Identities=15% Similarity=0.174 Sum_probs=199.0
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+. +.++..+++. +.++.+++||++|+++++++++++.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~-~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQND-RMKKSLQKLV--DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCch-HHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999 8999999999999995 999999984 3444444443 24678899999999999999999999
Q ss_pred cCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+++++|+||||||+... ..++.+.+.++|++++++|+.+++++++.++|+|.+ +|+||++||.++..
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~----~g~Iv~iss~~~~~------ 149 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP----GASIVTLTYFGSER------ 149 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc----CceEEEEeccCccc------
Confidence 99999999999998643 246678899999999999999999999999999964 37999999987763
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.+++..|++||+|+++|+++|+.|+ +++||+||+|+||+|+|++... .
T Consensus 150 -----------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gI~vn~i~PG~v~T~~~~~-~ 198 (252)
T PRK06079 150 -----------------------------AIPNYNVMGIAKAALESSVRYLARDL-GKKGIRVNAISAGAVKTLAVTG-I 198 (252)
T ss_pred -----------------------------cCCcchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCccccccccc-C
Confidence 34567789999999999999999999 6779999999999999985432 1
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..............+.+++.+|||+|+.++||+++...+++|+.+.+||.
T Consensus 199 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 248 (252)
T PRK06079 199 KGHKDLLKESDSRTVDGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDKG 248 (252)
T ss_pred CChHHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccccccEEEeCCc
Confidence 11111111223345667899999999999999999988999999999984
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=307.79 Aligned_cols=278 Identities=37% Similarity=0.560 Sum_probs=228.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.++.+++++|||+++|||+++|+.|+.+|+ +|++.+|+.++.+++.+++.. ...++.+++||+++.++|.++.+++.
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~ 109 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK 109 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999999996 999999999898988888864 34578899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|++|||||++.... ..+.|+++.+|.+|++|+|+|++.++|.|+.+. .+|||++||..+ .
T Consensus 110 ~~~~~ldvLInNAGV~~~~~---~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~--~~RIV~vsS~~~-~-------- 175 (314)
T KOG1208|consen 110 KKEGPLDVLINNAGVMAPPF---SLTKDGLELTFATNYLGHFLLTELLLPLLKRSA--PSRIVNVSSILG-G-------- 175 (314)
T ss_pred hcCCCccEEEeCcccccCCc---ccCccchhheehhhhHHHHHHHHHHHHHHhhCC--CCCEEEEcCccc-c--------
Confidence 99999999999999986543 568899999999999999999999999999875 379999999887 1
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
...++.++++.. ...+....+|+.||.++..+++.|++++ .. ||.++++|||.|.|+.+.+ ...
T Consensus 176 ~~~~~~~l~~~~-------------~~~~~~~~~Y~~SKla~~l~~~eL~k~l-~~-~V~~~~~hPG~v~t~~l~r-~~~ 239 (314)
T KOG1208|consen 176 GKIDLKDLSGEK-------------AKLYSSDAAYALSKLANVLLANELAKRL-KK-GVTTYSVHPGVVKTTGLSR-VNL 239 (314)
T ss_pred Cccchhhccchh-------------ccCccchhHHHHhHHHHHHHHHHHHHHh-hc-CceEEEECCCcccccceec-chH
Confidence 112222222110 0114556689999999999999999998 44 9999999999999986766 333
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCC-CCceEEccCCCCcccccccCcccCCHHHHHHHHHHHHHHhcC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 398 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~-~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~~ 398 (399)
..+.+...+.... .-++++.|+..++++.+++.. .+|.|+..+.. ..+.+.+.|++.++++|+.+++++++
T Consensus 240 ~~~~l~~~l~~~~---~ks~~~ga~t~~~~a~~p~~~~~sg~y~~d~~~-----~~~~~~a~d~~~~~~lw~~s~~l~~~ 311 (314)
T KOG1208|consen 240 LLRLLAKKLSWPL---TKSPEQGAATTCYAALSPELEGVSGKYFEDCAI-----AEPSEEALDEELAEKLWKFSEELIDE 311 (314)
T ss_pred HHHHHHHHHHHHh---ccCHHHHhhheehhccCccccCccccccccccc-----cccccccCCHHHHHHHHHHHHHHhhh
Confidence 3333333332222 248999999999999998775 89999887773 45588999999999999999999864
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=306.26 Aligned_cols=244 Identities=16% Similarity=0.168 Sum_probs=201.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.. +...+.+...+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 8988888642 2333344444567889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|.+++. +|+||++||.++..
T Consensus 81 ~g~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~---------- 148 (251)
T PRK12481 81 MGHIDILINNAGIIR-RQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGN-GGKIINIASMLSFQ---------- 148 (251)
T ss_pred cCCCCEEEECCCcCC-CCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCC-CCEEEEeCChhhcC----------
Confidence 999999999999863 456678899999999999999999999999999976532 47999999998764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++... .....
T Consensus 149 -------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~girvn~v~PG~v~t~~~~~-~~~~~ 201 (251)
T PRK12481 149 -------------------------GGIRVPSYTASKSAVMGLTRALATEL-SQYNINVNAIAPGYMATDNTAA-LRADT 201 (251)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCCccCchhh-cccCh
Confidence 22455689999999999999999999 6679999999999999985432 11111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........|.+++.+|||+|+.++||+++.+.+++|+.+.+||.
T Consensus 202 ~~~~~~~~~~p~~~~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 202 ARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 1112233455677889999999999999999889999999999984
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=307.87 Aligned_cols=263 Identities=19% Similarity=0.211 Sum_probs=214.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+ +.+++..+++...+.++.++.||++++++++.+++++.+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999995 99999999 77777777776556678999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.....++.+.+.++|++++++|+.+++++++.++|+|++.+ |+||++||.++..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 146 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG---GSIINTSSFSGQA----------- 146 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEeCchhhcC-----------
Confidence 99999999999864445666788999999999999999999999999998753 7999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+|++.|++.++.++ .+.||+||+|+||+|+|++..........
T Consensus 147 ------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~v~~v~PG~v~T~~~~~~~~~~~~ 201 (272)
T PRK08589 147 ------------------------ADLYRSGYNAAKGAVINFTKSIAIEY-GRDGIRANAIAPGTIETPLVDKLTGTSED 201 (272)
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCchhhhhcccchh
Confidence 23456789999999999999999999 66799999999999999854321110000
Q ss_pred hhchhh-----HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHH
Q 015844 323 LLFPPF-----QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEIS 392 (399)
Q Consensus 323 ~~~~~~-----~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~ 392 (399)
.....+ ...+.+++.+|+|+|+.++||+++...+++|+.+.+||....+ ...+..+++..|..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg~~~~------~~~~~~~~~~~~~~~ 270 (272)
T PRK08589 202 EAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSFITGETIRIDGGVMAY------TWPGEMLSDDSWKRT 270 (272)
T ss_pred hHHHHHhhhhhccCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCcccC------CCCCcccccchhhhh
Confidence 000011 1235667889999999999999998889999999999863321 233555567777665
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=307.63 Aligned_cols=243 Identities=16% Similarity=0.115 Sum_probs=195.6
Q ss_pred ccCCCEEEEEcC--CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~--s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++|++||||| ++|||+++|+.|+++|+ +|++++|+. +.++..+++.........++||++|+++++++++++.+
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH
Confidence 478999999997 67999999999999996 898888763 23333333432223356789999999999999999999
Q ss_pred cCCCccEEEecCcccCCC----CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~----~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
+++++|+||||||+.... ..+++.+.++|++++++|+.+++++++.++|.|+++ +|+||++||.++..
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~---~g~Iv~iss~~~~~----- 152 (261)
T PRK08690 81 HWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR---NSAIVALSYLGAVR----- 152 (261)
T ss_pred HhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc---CcEEEEEccccccc-----
Confidence 999999999999986431 123467888999999999999999999999998754 37999999988763
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+.+++..|++||+|+..|++.++.++ +++||+||+|+||+|+|++...
T Consensus 153 ------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gIrVn~i~PG~v~T~~~~~- 200 (261)
T PRK08690 153 ------------------------------AIPNYNVMGMAKASLEAGIRFTAACL-GKEGIRCNGISAGPIKTLAASG- 200 (261)
T ss_pred ------------------------------CCCCcccchhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccchhhhc-
Confidence 34567889999999999999999999 6779999999999999985322
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...............|.+++.+|||+|+.++||+++.+.+++|+.+.+||.
T Consensus 201 ~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG 251 (261)
T PRK08690 201 IADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGG 251 (261)
T ss_pred CCchHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCC
Confidence 111111111223345678889999999999999999989999999999985
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=306.70 Aligned_cols=241 Identities=14% Similarity=0.108 Sum_probs=195.3
Q ss_pred ccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+++|++|||||++ |||+++|+.|+++|+ +|++.+|+. ..++..+++... +. ..+++||++|+++++++++++.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~-~~~~~~~~l~~~~g~-~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE-VLEKRVKPLAEEIGC-NFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch-HHHHHHHHHHHhcCC-ceEEEccCCCHHHHHHHHHHHH
Confidence 46789999999997 999999999999996 899888874 333333444222 32 3467899999999999999999
Q ss_pred HcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
+++|++|+||||||+... ..++.+.+.++|++++++|+.+++.+++.++|.|.+ +|+||++||.++..
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~----~G~Iv~isS~~~~~----- 152 (260)
T PRK06603 82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD----GGSIVTLTYYGAEK----- 152 (260)
T ss_pred HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CceEEEEecCcccc-----
Confidence 999999999999998532 235668899999999999999999999999999964 37999999987653
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+.+++..|++||+|+++|++.|+.|+ .++||+||+|+||+|+|++...
T Consensus 153 ------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~- 200 (260)
T PRK06603 153 ------------------------------VIPNYNVMGVAKAALEASVKYLANDM-GENNIRVNAISAGPIKTLASSA- 200 (260)
T ss_pred ------------------------------CCCcccchhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcCcchhhhc-
Confidence 34567789999999999999999999 6779999999999999985321
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...............|.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 201 ~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 201 IGDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred CCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCcccccCcceEEEeCCc
Confidence 111111111222345677889999999999999999888999999999985
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=305.87 Aligned_cols=243 Identities=13% Similarity=0.119 Sum_probs=197.7
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChH--HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++++|+++||||+ +|||+++|++|+++|+ +|++..|+.+ +.++..+++...+.++.++++|++|+++++++++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 5789999999986 8999999999999996 8888766432 233444444433345778999999999999999999
Q ss_pred HHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
.+++|++|+||||||+... ..++.+.+.++|+++|++|+.|++++++.++|.|++ +|+||++||..+..
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~----~g~Iv~isS~~~~~---- 153 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE----GGSIVTLTYLGGVR---- 153 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh----CCeEEEEecccccc----
Confidence 9999999999999998532 245678899999999999999999999999999975 37999999987763
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|++||+|+.+|++.|+.|+ .++||+||+|+||+|+|++...
T Consensus 154 -------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~i~PG~v~T~~~~~ 201 (258)
T PRK07370 154 -------------------------------AIPNYNVMGVAKAALEASVRYLAAEL-GPKNIRVNAISAGPIRTLASSA 201 (258)
T ss_pred -------------------------------CCcccchhhHHHHHHHHHHHHHHHHh-CcCCeEEEEEecCcccCchhhc
Confidence 34667789999999999999999999 6779999999999999985321
Q ss_pred ccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...............+.+++.+|+|+|+.+.||+++...+++|+.+.+||.
T Consensus 202 -~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 202 -VGGILDMIHHVEEKAPLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred -cccchhhhhhhhhcCCcCcCCCHHHHHHHHHHHhChhhccccCcEEEECCc
Confidence 111111111222344667889999999999999999999999999999984
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=305.30 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=196.6
Q ss_pred ccccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHH---HHHHHHHhccCCCcEEEEEecCCCHHHHHHHH
Q 015844 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~---~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~ 155 (399)
.+++++|++|||||+ +|||+++|+.|+++|+ +|++++|+... ++++.+++ ..+.+++||++|.+++++++
T Consensus 5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~ 79 (258)
T PRK07533 5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVF 79 (258)
T ss_pred ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHH
Confidence 446889999999998 5999999999999996 89999998543 22333222 23567899999999999999
Q ss_pred HHHHHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccC
Q 015844 156 DTFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (399)
Q Consensus 156 ~~~~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~ 232 (399)
+++.+.+|++|++|||||+... ..++.+.+.++|+++|++|+.|++++++.++|.|++ +|+||++||..+..
T Consensus 80 ~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~----~g~Ii~iss~~~~~- 154 (258)
T PRK07533 80 ARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN----GGSLLTMSYYGAEK- 154 (258)
T ss_pred HHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc----CCEEEEEecccccc-
Confidence 9999999999999999998532 245667899999999999999999999999999964 37999999987653
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
+.+.+..|++||+|+.+|++.|+.|+ .++||+||+|+||+|+|++
T Consensus 155 ----------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~v~PG~v~T~~ 199 (258)
T PRK07533 155 ----------------------------------VVENYNLMGPVKAALESSVRYLAAEL-GPKGIRVHAISPGPLKTRA 199 (258)
T ss_pred ----------------------------------CCccchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCcCChh
Confidence 34567789999999999999999999 6679999999999999985
Q ss_pred CccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ................+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 200 ~~-~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~L~s~~~~~itG~~i~vdgg 253 (258)
T PRK07533 200 AS-GIDDFDALLEDAAERAPLRRLVDIDDVGAVAAFLASDAARRLTGNTLYIDGG 253 (258)
T ss_pred hh-ccCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhChhhccccCcEEeeCCc
Confidence 42 2111111111223345667889999999999999999888999999999985
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=306.95 Aligned_cols=286 Identities=30% Similarity=0.417 Sum_probs=218.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.++++|+++||||++|||+++|+.|+++|+ +|++++|+.++.++..+++... +.++.++.||++|.++++++++++.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 368899999999999999999999999996 9999999988887777776432 3468899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+... ...+.+.++|+.+|++|+.|++++++.++|.|++. .++||++||.++..+..
T Consensus 89 ~~~~~iD~li~nAG~~~~--~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~---~~riv~vsS~~~~~~~~----- 158 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTP--PERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG---RARVTSQSSIAARRGAI----- 158 (313)
T ss_pred HhCCCccEEEECCccccC--CccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC---CCCeEEEechhhcCCCc-----
Confidence 999999999999998643 23356889999999999999999999999999865 37999999998764221
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCccccc
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
++.++ ....++++...|+.||+|+++|++.|++++. ...||+||+|+||+|+|++... ..
T Consensus 159 ---~~~~~---------------~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~-~~ 219 (313)
T PRK05854 159 ---NWDDL---------------NWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAA-RP 219 (313)
T ss_pred ---Ccccc---------------cccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCcccc-cc
Confidence 11111 1112456788999999999999999998752 3468999999999999985432 11
Q ss_pred hhh---hh-hchhhHHHH--hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc----cccccCcccCCHHHHHHH
Q 015844 319 PLF---RL-LFPPFQKYI--TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS----FENQLSQEASDVEKARKV 388 (399)
Q Consensus 319 ~~~---~~-~~~~~~~~~--~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~----~~~~~~~~~~~~~~~~~l 388 (399)
... .. +...+.... .....++++.|...++++.++.. .+|.||..++.... ........+.|++++++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~~l~~a~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 298 (313)
T PRK05854 220 EVGRDKDTLMVRLIRSLSARGFLVGTVESAILPALYAATSPDA-EGGAFYGPRGPGELGGGPVEQALYPPLRRNAEAARL 298 (313)
T ss_pred ccccchhHHHHHHHHHHhhcccccCCHHHHHHHhhheeeCCCC-CCCcEECCCcccccCCCcccCCCCcccCCHHHHHHH
Confidence 100 00 101111110 01245899999999999988765 36999987653211 012234456899999999
Q ss_pred HHHHHHHhcC
Q 015844 389 WEISEKLVGL 398 (399)
Q Consensus 389 w~~~~~~~~~ 398 (399)
|++|++++++
T Consensus 299 w~~s~~~~~~ 308 (313)
T PRK05854 299 WEVSEQLTGV 308 (313)
T ss_pred HHHHHHHHCC
Confidence 9999999985
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=302.70 Aligned_cols=246 Identities=20% Similarity=0.197 Sum_probs=207.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.++.+++.+++...+.++.++.||++++++++++++++.++
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999995 9999999988888887777666678899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.....++.+.+.++|++++++|+.+++++++.++|.|++.+ .++||++||.++..
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~--~~~iv~~sS~~~~~---------- 148 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG--GGSLIFTSTFVGHT---------- 148 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEechHhhc----------
Confidence 999999999999864445667889999999999999999999999999998765 47999999987652
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.+.+++..|++||++++.+++.++.++ .+.||+||+|+||+|+|++... .....
T Consensus 149 ------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~~~ 202 (254)
T PRK07478 149 ------------------------AGFPGMAAYAASKAGLIGLTQVLAAEY-GAQGIRVNALLPGGTDTPMGRA-MGDTP 202 (254)
T ss_pred ------------------------cCCCCcchhHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCcccCccccc-ccCCH
Confidence 123567789999999999999999999 5679999999999999985432 11111
Q ss_pred hhhchhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..... ...+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 203 ~-~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 248 (254)
T PRK07478 203 E-ALAFVAGLHALKRMAQPEEIAQAALFLASDAASFVTGTALLVDGG 248 (254)
T ss_pred H-HHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCeEEeCCc
Confidence 1 11111 123456788999999999999999888999999999984
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=302.09 Aligned_cols=245 Identities=20% Similarity=0.179 Sum_probs=206.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++.. .+.++.+++||++|+++++++++++.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999995 899999998888887777754 356788999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+... ....+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||..+..
T Consensus 83 ~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 150 (260)
T PRK07063 83 AFGPLDVLVNNAGINVF-ADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG--RGSIVNIASTHAFK--------- 150 (260)
T ss_pred HhCCCcEEEECCCcCCC-CChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC--CeEEEEECChhhcc---------
Confidence 99999999999998633 3455778899999999999999999999999998764 47999999987763
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.++...|++||+|++.|++.++.++ .+.||+||+|+||+|+|++......
T Consensus 151 --------------------------~~~~~~~Y~~sKaa~~~~~~~la~el-~~~gIrvn~v~PG~v~t~~~~~~~~~~ 203 (260)
T PRK07063 151 --------------------------IIPGCFPYPVAKHGLLGLTRALGIEY-AARNVRVNAIAPGYIETQLTEDWWNAQ 203 (260)
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccChhhhhhhhcc
Confidence 33566789999999999999999999 6679999999999999985432110
Q ss_pred hh-hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PL-FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+. ...........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 204 ~~~~~~~~~~~~~~~~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg 253 (260)
T PRK07063 204 PDPAAARAETLALQPMKRIGRPEEVAMTAVFLASDEAPFINATCITIDGG 253 (260)
T ss_pred CChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccccCCcEEEECCC
Confidence 00 00111122345667889999999999999999988999999999985
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=300.57 Aligned_cols=244 Identities=20% Similarity=0.193 Sum_probs=206.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++++++++.+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 99999999888888887776666778899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.+++++++++.|.|.+++. +|+||++||.++....
T Consensus 85 g~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~--------- 153 (253)
T PRK05867 85 GGIDIAVCNAGIIT-VTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQ-GGVIINTASMSGHIIN--------- 153 (253)
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC-CcEEEEECcHHhcCCC---------
Confidence 99999999999863 355667889999999999999999999999999977542 3789999998765311
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.......|++||+|++.|++.++.++ .+.||+||+|+||+|+|++... ....
T Consensus 154 ------------------------~~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~i~PG~v~t~~~~~-~~~~-- 205 (253)
T PRK05867 154 ------------------------VPQQVSHYCASKAAVIHLTKAMAVEL-APHKIRVNSVSPGYILTELVEP-YTEY-- 205 (253)
T ss_pred ------------------------CCCCccchHHHHHHHHHHHHHHHHHH-hHhCeEEEEeecCCCCCccccc-chHH--
Confidence 01234689999999999999999999 6679999999999999985432 1111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 206 -~~~~~~~~~~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG 249 (253)
T PRK05867 206 -QPLWEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGG 249 (253)
T ss_pred -HHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCC
Confidence 11122334567889999999999999999999999999999985
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=301.78 Aligned_cols=242 Identities=12% Similarity=0.133 Sum_probs=197.8
Q ss_pred cccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 82 ~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
+++++|++|||||+ +|||+++|+.|+++|+ +|++++|+. +.++++.+++. +.++.+++||++|+++++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHH
Confidence 35789999999997 8999999999999996 898887753 34455544442 4578889999999999999999
Q ss_pred HHHHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
++.+++|++|++|||||+... ..++.+.+.++|++++++|+.+++++++.++|.|.+ +|+||++||.++..
T Consensus 80 ~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~Iv~isS~~~~~-- 153 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE----GGSIVTLTYLGGER-- 153 (257)
T ss_pred HHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc----CceEEEEcccCCcc--
Confidence 999999999999999998532 245667899999999999999999999999999964 37999999988764
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.+.+..|++||+|++.|+++++.|+ +++||+||+|+||+|+|++.
T Consensus 154 ---------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~ 199 (257)
T PRK08594 154 ---------------------------------VVQNYNVMGVAKASLEASVKYLANDL-GKDGIRVNAISAGPIRTLSA 199 (257)
T ss_pred ---------------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCCEEeeeecCcccCHhH
Confidence 33566789999999999999999999 66799999999999999843
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.................+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 200 -~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dgg 252 (257)
T PRK08594 200 -KGVGGFNSILKEIEERAPLRRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDSG 252 (257)
T ss_pred -hhhccccHHHHHHhhcCCccccCCHHHHHHHHHHHcCcccccccceEEEECCc
Confidence 21111111111122234567789999999999999999999999999999984
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=301.85 Aligned_cols=241 Identities=14% Similarity=0.140 Sum_probs=194.4
Q ss_pred cCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++|++|||||++ |||+++|+.|+++|+ +|++.+|+. +.++..+++......+.++.||++|+++++++++++.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 6899999999986 999999999999996 899988873 344444555433345678899999999999999999999
Q ss_pred CCCccEEEecCcccCCCC----CCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~----~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+|++|+||||||+..... .+.+.+.++|++++++|+.|++.+++.+.|.+.+ +|+||++||..+..
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~Iv~iss~~~~~------ 151 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP----GSALLTLSYLGAER------ 151 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC----CcEEEEEecCCCCC------
Confidence 999999999999853211 1456788999999999999999999999986643 37999999987653
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.+++..|++||+|+++|++.++.|+ +++||+||+|+||+|+|++. ...
T Consensus 152 -----------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~-~~~ 200 (262)
T PRK07984 152 -----------------------------AIPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAA-SGI 200 (262)
T ss_pred -----------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-cccCcEEeeeecCcccchHH-hcC
Confidence 34567789999999999999999999 67799999999999999742 211
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 201 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg 250 (262)
T PRK07984 201 KDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 250 (262)
T ss_pred CchHHHHHHHHHcCCCcCCCCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 11111111122344667889999999999999999888999999999985
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=299.11 Aligned_cols=248 Identities=18% Similarity=0.123 Sum_probs=206.3
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+ ..++..+.+...+.++.++.+|++|+++++++++++.
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~ 81 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE 81 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999999999995 8999988753 4566666665556678899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.. ..++.+.+.++|++++++|+.+++++++++++.|.+++ .|+||++||.++..+.
T Consensus 82 ~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~~------ 152 (254)
T PRK06114 82 AELGALTLAVNAAGIAN-ANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG--GGSIVNIASMSGIIVN------ 152 (254)
T ss_pred HHcCCCCEEEECCCCCC-CCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CcEEEEECchhhcCCC------
Confidence 99999999999999864 35666789999999999999999999999999998765 4799999999876421
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+......|+++|+|++.+++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 153 ---------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~PG~i~t~~~~~~~-- 202 (254)
T PRK06114 153 ---------------------------RGLLQAHYNASKAGVIHLSKSLAMEW-VGRGIRVNSISPGYTATPMNTRPE-- 202 (254)
T ss_pred ---------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeecCccCccccccc--
Confidence 11235689999999999999999998 567999999999999998643211
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
............+.+++.+|+|+|+.++||+++.+.+++|+.+.+||..
T Consensus 203 ~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 203 MVHQTKLFEEQTPMQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGGF 251 (254)
T ss_pred chHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceEEECcCE
Confidence 1111112233456788999999999999999999999999999999853
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=299.00 Aligned_cols=247 Identities=21% Similarity=0.204 Sum_probs=204.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+.+.+|++||||+++|||+++|+.|++.|| +|++++|+.+..++....+... +.++..+.||++++++++++++..
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 468999999999999999999999999997 9999999999888877776443 446999999999999999999999
Q ss_pred HHc-CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhH-HHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 159 RRS-GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG-HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 159 ~~~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g-~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
.++ +|+||+||||||......++.++++++|++++++|+.| .+++.+.+.+++.+++ +|.|+++||.++..+.
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~--gg~I~~~ss~~~~~~~--- 157 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSK--GGSIVNISSVAGVGPG--- 157 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcC--CceEEEEeccccccCC---
Confidence 998 79999999999998665578899999999999999995 6666677777777655 5899999999887421
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
++....|+++|+|++.|+|.+|.|| .++|||||+|+||.|.|+. ...
T Consensus 158 -------------------------------~~~~~~Y~~sK~al~~ltr~lA~El-~~~gIRvN~v~PG~i~T~~-~~~ 204 (270)
T KOG0725|consen 158 -------------------------------PGSGVAYGVSKAALLQLTRSLAKEL-AKHGIRVNSVSPGLVKTSL-RAA 204 (270)
T ss_pred -------------------------------CCCcccchhHHHHHHHHHHHHHHHH-hhcCcEEEEeecCcEeCCc-ccc
Confidence 1122789999999999999999999 7789999999999999985 111
Q ss_pred cch--hhhhhch---hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIP--LFRLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~--~~~~~~~---~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ....+.. .....|.++...|+|+|..+.||+++...+++|+-+.+||.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~p~gr~g~~~eva~~~~fla~~~asyitG~~i~vdgG 260 (270)
T KOG0725|consen 205 GLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFLASDDASYITGQTIIVDGG 260 (270)
T ss_pred ccccchhhHHhhhhccccccccCCccCHHHHHHhHHhhcCcccccccCCEEEEeCC
Confidence 111 0111111 22344688999999999999999999877999999999985
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=299.58 Aligned_cols=239 Identities=15% Similarity=0.107 Sum_probs=190.9
Q ss_pred ccCCCEEEEEcC--CChHHHHHHHHHHHcCCcEEEEeecC---hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~--s~gIG~aia~~l~~~Ga~~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.+++|++||||| ++|||+++|++|+++|+ +|++++|. .+.++++.+++ + ...+++||++|+++++++++.
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~Dv~d~~~v~~~~~~ 77 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEF---G-SDLVFPCDVASDEQIDALFAS 77 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhc---C-CcceeeccCCCHHHHHHHHHH
Confidence 467899999996 68999999999999996 88887654 23333333322 2 234689999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCC----CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~----~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
+.++++++|++|||||+.... ..+++.+.++|+++|++|+.++++++++++|+|.+ .|+||++||.++..
T Consensus 78 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~----~g~Ii~iss~~~~~-- 151 (260)
T PRK06997 78 LGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD----DASLLTLSYLGAER-- 151 (260)
T ss_pred HHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC----CceEEEEecccccc--
Confidence 999999999999999986321 12346788999999999999999999999999953 37999999987753
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.+++..|++||+|+..|+++|+.|+ +++||+||+|+||+|+|++.
T Consensus 152 ---------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~ 197 (260)
T PRK06997 152 ---------------------------------VVPNYNTMGLAKASLEASVRYLAVSL-GPKGIRANGISAGPIKTLAA 197 (260)
T ss_pred ---------------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCccccchh
Confidence 34566789999999999999999999 67799999999999999743
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.................+.+++.+|||+|+.++||+++++.+++|+.+.+||.
T Consensus 198 -~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 198 -SGIKDFGKILDFVESNAPLRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred -ccccchhhHHHHHHhcCcccccCCHHHHHHHHHHHhCccccCcceeEEEEcCC
Confidence 21111111111122334667889999999999999999888999999999985
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=300.68 Aligned_cols=238 Identities=13% Similarity=0.113 Sum_probs=193.6
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChH---HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.|++|++|||||+ +|||+++|+.|+++|+ +|++++|+.. .++++.+++ + ...++++|++|++++++++++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~---~-~~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAEL---G-AFVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhc---C-CceEEecCCCCHHHHHHHHHH
Confidence 5678999999997 8999999999999996 8988888742 223332222 2 356789999999999999999
Q ss_pred HHHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
+.++++++|+||||||+... ..++.+.+.++|+++|++|+.+++++++.++|.|.+ +|+||++||.++..
T Consensus 82 ~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~----~g~Iv~iss~~~~~--- 154 (272)
T PRK08159 82 LEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD----GGSILTLTYYGAEK--- 154 (272)
T ss_pred HHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC----CceEEEEecccccc---
Confidence 99999999999999998632 245667899999999999999999999999999864 37999999976652
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.+++..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++..
T Consensus 155 --------------------------------~~p~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~ 201 (272)
T PRK08159 155 --------------------------------VMPHYNVMGVAKAALEASVKYLAVDL-GPKNIRVNAISAGPIKTLAAS 201 (272)
T ss_pred --------------------------------CCCcchhhhhHHHHHHHHHHHHHHHh-cccCeEEEEeecCCcCCHHHh
Confidence 34677889999999999999999999 677999999999999997432
Q ss_pred cccchhhhhhchh-hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 315 REHIPLFRLLFPP-FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~~~~~~~~-~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. . +........ ....|.+++.+|||+|+.++||+++...+++|+.+.+||.
T Consensus 202 ~-~-~~~~~~~~~~~~~~p~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG 253 (272)
T PRK08159 202 G-I-GDFRYILKWNEYNAPLRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSG 253 (272)
T ss_pred c-C-CcchHHHHHHHhCCcccccCCHHHHHHHHHHHhCccccCccceEEEECCC
Confidence 1 1 111111111 1234667889999999999999999888999999999996
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=289.21 Aligned_cols=226 Identities=21% Similarity=0.266 Sum_probs=197.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+.++++||||||+|||+++|+.|+++| ++|++++|++++++++.++++.. +..+.++.+|+++++++.++.+++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 4578999999999999999999999999 59999999999999999998754 578999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
.+.||+||||||+. ...++.+.++++.++++++|+.+...|+++++|.|.+++ .|.||||+|.++..
T Consensus 82 ~~~IdvLVNNAG~g-~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~--~G~IiNI~S~ag~~---------- 148 (265)
T COG0300 82 GGPIDVLVNNAGFG-TFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG--AGHIINIGSAAGLI---------- 148 (265)
T ss_pred CCcccEEEECCCcC-CccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechhhcC----------
Confidence 88999999999996 456788999999999999999999999999999999986 58999999999985
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.|..+.|++||+++.+|+++|+.|+ .+.||+|.+|+||.|.|++.......
T Consensus 149 -------------------------p~p~~avY~ATKa~v~~fSeaL~~EL-~~~gV~V~~v~PG~~~T~f~~~~~~~-- 200 (265)
T COG0300 149 -------------------------PTPYMAVYSATKAFVLSFSEALREEL-KGTGVKVTAVCPGPTRTEFFDAKGSD-- 200 (265)
T ss_pred -------------------------CCcchHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEEecCccccccccccccc--
Confidence 45788999999999999999999999 67899999999999999844311111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.....+...+.+|+++|+..+..+.....
T Consensus 201 -----~~~~~~~~~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 201 -----VYLLSPGELVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred -----cccccchhhccCHHHHHHHHHHHHhcCCc
Confidence 11111234468999999999999876544
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=302.80 Aligned_cols=245 Identities=16% Similarity=0.103 Sum_probs=194.6
Q ss_pred cccCCCEEEEEcC--CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc---------C-C---CcEEEEEecC-
Q 015844 82 KTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------A-K---ENYTIMHLDL- 145 (399)
Q Consensus 82 ~~l~~k~~lVTG~--s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~---------~-~---~~~~~~~~Dv- 145 (399)
++++||++||||| ++|||+++|+.|+++|+ +|++ +|+.+.++.....+.. . + .....+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 4689999999999 89999999999999997 8888 7777777666655432 1 1 1146788999
Q ss_pred -CC------------------HHHHHHHHHHHHHcCCCccEEEecCcccC-CCCCCCCCChhhhhHhhhchhhHHHHHHH
Q 015844 146 -AS------------------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (399)
Q Consensus 146 -s~------------------~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 205 (399)
++ .++++++++++.+.+|++|+||||||+.. ...++.+.+.++|+++|++|+.+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~ 162 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ 162 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 43 44899999999999999999999998642 23567789999999999999999999999
Q ss_pred HHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh-hhHHHhHHHHHHH
Q 015844 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 284 (399)
Q Consensus 206 ~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~ 284 (399)
.++|.|+++ |+||++||.++.. +.+++ ..|++||+|+++|
T Consensus 163 ~~~p~m~~~----G~II~isS~a~~~-----------------------------------~~p~~~~~Y~asKaAl~~l 203 (303)
T PLN02730 163 HFGPIMNPG----GASISLTYIASER-----------------------------------IIPGYGGGMSSAKAALESD 203 (303)
T ss_pred HHHHHHhcC----CEEEEEechhhcC-----------------------------------CCCCCchhhHHHHHHHHHH
Confidence 999999763 7999999988764 22333 4799999999999
Q ss_pred HHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 285 ~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
++.|+.|+..++|||||+|+||+|+|++... ...............+.+++.+|+|+|..++||+++...+++|+.+.+
T Consensus 204 ~~~la~El~~~~gIrVn~V~PG~v~T~~~~~-~~~~~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l~v 282 (303)
T PLN02730 204 TRVLAFEAGRKYKIRVNTISAGPLGSRAAKA-IGFIDDMIEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATIYV 282 (303)
T ss_pred HHHHHHHhCcCCCeEEEEEeeCCccCchhhc-ccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEE
Confidence 9999999932369999999999999985432 111111111111223557788999999999999999888999999999
Q ss_pred CCCC
Q 015844 365 NKDS 368 (399)
Q Consensus 365 dg~~ 368 (399)
||..
T Consensus 283 dGG~ 286 (303)
T PLN02730 283 DNGL 286 (303)
T ss_pred CCCc
Confidence 8853
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=300.34 Aligned_cols=240 Identities=19% Similarity=0.166 Sum_probs=200.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---------HHHHHHHHHhccCCCcEEEEEecCCCHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 153 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+. +.++...+++...+.++.++.+|++|++++++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHH
Confidence 46899999999999999999999999996 888888765 66667777776666788899999999999999
Q ss_pred HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC----CCceEEEEecccc
Q 015844 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITG 229 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~----~~g~iV~vSS~~~ 229 (399)
+++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++... ..|+||++||.++
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILR-DRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 99999999999999999999864 356778899999999999999999999999999976421 1379999999988
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
.. +.+++..|++||+|+++|++.++.|+ .+.||+||+|+|| ++
T Consensus 161 ~~-----------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~Pg-~~ 203 (286)
T PRK07791 161 LQ-----------------------------------GSVGQGNYSAAKAGIAALTLVAAAEL-GRYGVTVNAIAPA-AR 203 (286)
T ss_pred Cc-----------------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-HHhCeEEEEECCC-CC
Confidence 74 33567899999999999999999999 5679999999999 78
Q ss_pred CCCCccccchhhhhhchhhHHHHhc--CCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 310 TTGLFREHIPLFRLLFPPFQKYITK--GYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 310 T~~~~~~~~~~~~~~~~~~~~~~~~--~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
|++... ..+ ......+.+ +..+|+|+|+.++||+++...+++|+++.+||..
T Consensus 204 T~~~~~-~~~------~~~~~~~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~ 257 (286)
T PRK07791 204 TRMTET-VFA------EMMAKPEEGEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGGK 257 (286)
T ss_pred CCcchh-hHH------HHHhcCcccccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCc
Confidence 874321 111 011111112 3579999999999999998889999999999854
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=295.29 Aligned_cols=239 Identities=15% Similarity=0.087 Sum_probs=192.1
Q ss_pred ccCCCEEEEEcC--CChHHHHHHHHHHHcCCcEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~--s~gIG~aia~~l~~~Ga~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++++|+++|||| ++|||+++|+.|+++|+ +|++++|+. +..+++.+++. .++.++.||++|+++++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP---EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC---CCCcEEeCCCCCHHHHHHHHHHH
Confidence 578999999999 89999999999999996 899998764 33444444442 35778999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCC---CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
.+.++++|+||||||+.... .++.+.+.++|++++++|+.+++++++.++|.|++ +|+||++||....
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~----~g~Iv~is~~~~~----- 150 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE----GGSIVGLDFDATV----- 150 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc----CceEEEEeecccc-----
Confidence 99999999999999986321 34567788999999999999999999999999974 3699999864321
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.+.+..|++||+|+++|+++|+.|+ .++||+||+|+||+|+|++..
T Consensus 151 -------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~- 197 (256)
T PRK07889 151 -------------------------------AWPAYDWMGVAKAALESTNRYLARDL-GPRGIRVNLVAAGPIRTLAAK- 197 (256)
T ss_pred -------------------------------cCCccchhHHHHHHHHHHHHHHHHHh-hhcCeEEEeeccCcccChhhh-
Confidence 23566789999999999999999999 667999999999999998532
Q ss_pred ccchhhhhhchhhHHHHhc-CCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 316 EHIPLFRLLFPPFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~-~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
................+.+ ++.+|+|+|+.++||+++...+++|+++.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~p~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg 250 (256)
T PRK07889 198 AIPGFELLEEGWDERAPLGWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGG 250 (256)
T ss_pred cccCcHHHHHHHHhcCccccccCCHHHHHHHHHHHhCcccccccceEEEEcCc
Confidence 1111111111112233455 578999999999999999888999999999984
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=296.51 Aligned_cols=282 Identities=28% Similarity=0.382 Sum_probs=214.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.++.++..+++. .+.++.+|++|.++++++++++.+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999995 99999999887776666553 36789999999999999999999989
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+... + .+.+.++|+..+++|+.|++++++.++|.|.+.+ .++||++||..+..+..
T Consensus 98 ~~iD~li~nAg~~~~--~-~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~-------- 164 (315)
T PRK06196 98 RRIDILINNAGVMAC--P-ETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA--GARVVALSSAGHRRSPI-------- 164 (315)
T ss_pred CCCCEEEECCCCCCC--C-CccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCeEEEECCHHhccCCC--------
Confidence 999999999998632 2 2457789999999999999999999999998764 47999999976542110
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.+.+. ....++++...|+.||++++.+++.++.++ .+.||+|++|+||+|.|++.. .......
T Consensus 165 ~~~~~---------------~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~-~~~gi~v~~v~PG~v~t~~~~-~~~~~~~ 227 (315)
T PRK06196 165 RWDDP---------------HFTRGYDKWLAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILTPLQR-HLPREEQ 227 (315)
T ss_pred Ccccc---------------CccCCCChHHHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeCCcccCCccc-cCChhhh
Confidence 01100 001245677899999999999999999998 567999999999999998542 2211100
Q ss_pred hhchhhH--HHHh-cCCCChHHHHHHHHHhhcCCCCC-CCceEEccCCCCcccc-----cccCcccCCHHHHHHHHHHHH
Q 015844 323 LLFPPFQ--KYIT-KGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDSASFE-----NQLSQEASDVEKARKVWEISE 393 (399)
Q Consensus 323 ~~~~~~~--~~~~-~~~~~pee~a~~v~~l~~~~~~~-~~G~~~~~dg~~~~~~-----~~~~~~~~~~~~~~~lw~~~~ 393 (399)
.....+. ..+. .++.+|+++|..++|+++.+... .+|.|+..++...+.. ....+.+.|.+++++||++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~s~ 307 (315)
T PRK06196 228 VALGWVDEHGNPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCEDCDIAEPTPKDAPWSGVRPHAIDPEAAARLWALSA 307 (315)
T ss_pred hhhhhhhhhhhhhhhhcCCHhHHHHHHHHHhcCCccCCCCCeEeCCCcccccCCcccccCCCCcccCCHHHHHHHHHHHH
Confidence 0000111 1122 24679999999999999877654 5677765443221111 134667889999999999999
Q ss_pred HHhcCC
Q 015844 394 KLVGLA 399 (399)
Q Consensus 394 ~~~~~~ 399 (399)
++++++
T Consensus 308 ~~~~~~ 313 (315)
T PRK06196 308 ALTGVD 313 (315)
T ss_pred HHHCCC
Confidence 999874
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=294.38 Aligned_cols=245 Identities=18% Similarity=0.148 Sum_probs=205.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++... +.++.++.+|++|.++++++++++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999996 8999999988877776666443 34788999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ...++.+.+.++|++.+++|+.+++++++.++|.|++.+ .|+||++||..+..
T Consensus 84 ~~g~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 151 (265)
T PRK07062 84 RFGGVDMLVNNAGQG-RVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA--AASIVCVNSLLALQ--------- 151 (265)
T ss_pred hcCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CcEEEEeccccccC---------
Confidence 999999999999986 445677889999999999999999999999999998764 47999999998764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|+++|+|+.+|++.++.|+ .+.||+||+|+||+|+|+++.......
T Consensus 152 --------------------------~~~~~~~y~asKaal~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~ 204 (265)
T PRK07062 152 --------------------------PEPHMVATSAARAGLLNLVKSLATEL-APKGVRVNSILLGLVESGQWRRRYEAR 204 (265)
T ss_pred --------------------------CCCCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccchhhhHHHHh
Confidence 33566789999999999999999999 567999999999999998543211100
Q ss_pred ------hhhhchh---hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 ------FRLLFPP---FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ------~~~~~~~---~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....... ....+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg 260 (265)
T PRK07062 205 ADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGG 260 (265)
T ss_pred hccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHHHhCchhcccccceEEEcCc
Confidence 0111000 1234667889999999999999998888999999999984
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=294.57 Aligned_cols=246 Identities=11% Similarity=0.094 Sum_probs=201.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.++++|++|||||++|||+++|+.|+++|+ +|++++| +.+.++...+++.. .+.++.++.+|++|+++++++++++.
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999996 8887764 55666666655543 35678999999999999999999999
Q ss_pred HcCCCccEEEecCcccCC-----CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 160 RSGRPLDVLVCNAAVYLP-----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~-----~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
+.++++|+||||||+... ..++.+.+.++|++++++|+.+++.+++.++|.|++.+ .|+||++||..+..
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--- 157 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG--GGSIISLSSTGNLV--- 157 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC--CEEEEEEecccccc---
Confidence 999999999999997521 23555778899999999999999999999999998764 47999999987653
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.+++..|++||+|++.|++.++.|+ .++||+||+|+||+++|++..
T Consensus 158 --------------------------------~~~~~~~Y~asK~a~~~~~~~la~el-~~~gi~v~~v~PG~i~T~~~~ 204 (260)
T PRK08416 158 --------------------------------YIENYAGHGTSKAAVETMVKYAATEL-GEKNIRVNAVSGGPIDTDALK 204 (260)
T ss_pred --------------------------------CCCCcccchhhHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccChhhh
Confidence 33566789999999999999999999 567999999999999998543
Q ss_pred cccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ...............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 205 ~-~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg 256 (260)
T PRK08416 205 A-FTNYEEVKAKTEELSPLNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGG 256 (260)
T ss_pred h-ccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCC
Confidence 2 211111111222334567789999999999999999888999999999884
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=295.73 Aligned_cols=243 Identities=18% Similarity=0.153 Sum_probs=200.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++.+|+. +..+++.+.+...+.++.++.||++|.+++.++++++.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 888887653 344455554544466788899999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|++|||||......++.+.+.++|++++++|+.|+++++++++|+|.+ +|+||++||..+..
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~iv~iSS~~~~~--------- 191 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK----GASIITTSSIQAYQ--------- 191 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc----CCEEEEECCchhcc---------
Confidence 99999999999997544456778899999999999999999999999999865 36999999988764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.++ .+.||+||+|+||+|+|++......+
T Consensus 192 --------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~i~PG~v~t~~~~~~~~~- 243 (294)
T PRK07985 192 --------------------------PSPHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISGGQT- 243 (294)
T ss_pred --------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hHhCcEEEEEECCcCccccccccCCC-
Confidence 33566789999999999999999998 56799999999999999854221111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 244 ~~~~~~~~~~~~~~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG 290 (294)
T PRK07985 244 QDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHhhhChhcCCccccEEeeCCC
Confidence 11111122344567789999999999999999988999999999984
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=290.04 Aligned_cols=243 Identities=16% Similarity=0.154 Sum_probs=199.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++++.. ++..+.+...+.++..+++|++|.++++++++++.+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999996 8888877542 23333443345678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||+. ...++.+.+.++|++++++|+.+++++++++.|.|.+++. +|+||++||..+..
T Consensus 84 ~~~D~li~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 150 (253)
T PRK08993 84 GHIDILVNNAGLI-RREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGN-GGKIINIASMLSFQ----------- 150 (253)
T ss_pred CCCCEEEECCCCC-CCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEECchhhcc-----------
Confidence 9999999999986 3445668899999999999999999999999999977532 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+....|+.||+|++++++.++.++ .+.||+||+|+||+++|++... ..+...
T Consensus 151 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pG~v~T~~~~~-~~~~~~ 204 (253)
T PRK08993 151 ------------------------GGIRVPSYTASKSGVMGVTRLMANEW-AKHNINVNAIAPGYMATNNTQQ-LRADEQ 204 (253)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccCcchhh-hccchH
Confidence 22445689999999999999999998 6679999999999999985432 111111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 205 ~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~dgg 249 (253)
T PRK08993 205 RSAEILDRIPAGRWGLPSDLMGPVVFLASSASDYINGYTIAVDGG 249 (253)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 111223455678899999999999999999999999999999884
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=288.99 Aligned_cols=194 Identities=27% Similarity=0.335 Sum_probs=171.2
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CC-cEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KE-NYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~-~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+..+.||+|+|||||+|||.++|+.|+++|+ +++++.|...+++...+++++. .. ++++++||++|.++++++++++
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 4578999999999999999999999999996 8888888888888776666543 22 5999999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
...+|++|+||||||+.. ...+++.+.+++..+|++|++|+..++++++|+|++++ +|+||++||++|..
T Consensus 86 ~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~--~GhIVvisSiaG~~------- 155 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN--DGHIVVISSIAGKM------- 155 (282)
T ss_pred HHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC--CCeEEEEecccccc-------
Confidence 999999999999999986 66777888899999999999999999999999999987 58999999999986
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCc--eEEEEeeCCcccCCCCcc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLFR 315 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~g--i~v~~v~PG~v~T~~~~~ 315 (399)
++|....|++||+|+.+|+++|..|+ .+.+ |++ +|+||+|+|++...
T Consensus 156 ----------------------------~~P~~~~Y~ASK~Al~~f~etLR~El-~~~~~~i~i-~V~PG~V~Te~~~~ 204 (282)
T KOG1205|consen 156 ----------------------------PLPFRSIYSASKHALEGFFETLRQEL-IPLGTIIII-LVSPGPIETEFTGK 204 (282)
T ss_pred ----------------------------CCCcccccchHHHHHHHHHHHHHHHh-hccCceEEE-EEecCceeecccch
Confidence 45666699999999999999999999 4444 666 99999999985543
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=289.49 Aligned_cols=245 Identities=17% Similarity=0.166 Sum_probs=207.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++...+.++.++.+|++|+++++++++.+.+.
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999995 9999999988888777777665667888999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||.. ...++.+.+.++|++++++|+.+++++++.+.+.+.+++ .++||++||..+..
T Consensus 84 ~~~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~---------- 150 (254)
T PRK08085 84 IGPIDVLINNAGIQ-RRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ--AGKIINICSMQSEL---------- 150 (254)
T ss_pred cCCCCEEEECCCcC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEccchhcc----------
Confidence 99999999999986 345667789999999999999999999999999997654 47999999987653
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+++|++++.+++.++.++ .+.||+||+|+||+++|++..... ...
T Consensus 151 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pG~~~t~~~~~~~-~~~ 203 (254)
T PRK08085 151 -------------------------GRDTITPYAASKGAVKMLTRGMCVEL-ARHNIQVNGIAPGYFKTEMTKALV-EDE 203 (254)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCCCCCcchhhhc-cCH
Confidence 23456789999999999999999999 667999999999999998553211 111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 204 ~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 204 AFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 1111122345667889999999999999999999999999999984
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=288.01 Aligned_cols=246 Identities=21% Similarity=0.223 Sum_probs=207.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||.+++++|+++|+ +|++++|+.+..+...+++...+.++.++++|+++.++++++++++.+.
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999988887777777655667888999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||......++.+.+.++|++++++|+.++++++++++|+|++.+ .++||++||..+..
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 150 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG--GGSIVNVASVNGVS---------- 150 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CcEEEEECchhhcC----------
Confidence 999999999999754335566788999999999999999999999999998764 47999999987763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|+++++.++ .+.||+|++|+||+|+|++... .....
T Consensus 151 -------------------------~~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~i~PG~v~t~~~~~-~~~~~ 203 (252)
T PRK07035 151 -------------------------PGDFQGIYSITKAAVISMTKAFAKEC-APFGIRVNALLPGLTDTKFASA-LFKND 203 (252)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeccccCccccc-ccCCH
Confidence 33566789999999999999999998 6679999999999999985432 11111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+..++.+|+|+|+.++||+++...+++|+++.+||.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 204 AILKQALAHIPLRRHAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred HHHHHHHccCCCCCcCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 1111222334566788999999999999999988999999999984
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=289.76 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=200.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+ ++.++++|++|+++++++++++.+.++++|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 699999999999999999999995 99999999888887777775443 6788999999999999999999999999999
Q ss_pred EEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 168 LVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 168 lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
||||||.... ...+.+.+.++|.+.+++|+.+++++++.++|.|.+.+ ..|+||++||.++..
T Consensus 80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~g~iv~isS~~~~~--------------- 143 (259)
T PRK08340 80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKK-MKGVLVYLSSVSVKE--------------- 143 (259)
T ss_pred EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCEEEEEeCcccCC---------------
Confidence 9999997532 23456778899999999999999999999999886432 247999999987763
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-------
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP------- 319 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~------- 319 (399)
+.++...|++||+++++|++.++.++ .++||+||+|+||+++|++.......
T Consensus 144 --------------------~~~~~~~y~~sKaa~~~~~~~la~e~-~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~ 202 (259)
T PRK08340 144 --------------------PMPPLVLADVTRAGLVQLAKGVSRTY-GGKGIRAYTVLLGSFDTPGARENLARIAEERGV 202 (259)
T ss_pred --------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CCCCEEEEEeccCcccCccHHHHHHhhhhccCC
Confidence 34567789999999999999999999 67799999999999999864321100
Q ss_pred -hhh-hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -LFR-LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -~~~-~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... .......+.|.+++.+|+|+|+.++||+++++.+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~p~~r~~~p~dva~~~~fL~s~~~~~itG~~i~vdgg 252 (259)
T PRK08340 203 SFEETWEREVLERTPLKRTGRWEELGSLIAFLLSENAEYMLGSTIVFDGA 252 (259)
T ss_pred chHHHHHHHHhccCCccCCCCHHHHHHHHHHHcCcccccccCceEeecCC
Confidence 000 011223345678899999999999999999999999999999984
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=288.64 Aligned_cols=246 Identities=18% Similarity=0.159 Sum_probs=207.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||.+++++|+++|+ +|++++|+.+..++..+.+...+.++.++.+|++|.++++++++++.+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999995 89999999887777777776666789999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||......++.+.+.++|++++++|+.++++++++++|.|.+.+ .++||++||..+..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~sS~~~~~----------- 149 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG--GGAIVNTASVAGLG----------- 149 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhcc-----------
Confidence 99999999999864444566789999999999999999999999999997764 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+++|+++++|++.++.++ .+.||+|++|+||.|+|++..........
T Consensus 150 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~~i~v~~i~PG~v~t~~~~~~~~~~~~ 204 (253)
T PRK06172 150 ------------------------AAPKMSIYAASKHAVIGLTKSAAIEY-AKKGIRVNAVCPAVIDTDMFRRAYEADPR 204 (253)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhcccChH
Confidence 34567789999999999999999999 56799999999999999865432110111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.++..+|+|+++.++||+++...+++|+++.+||.
T Consensus 205 ~~~~~~~~~~~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg 249 (253)
T PRK06172 205 KAEFAAAMHPVGRIGKVEEVASAVLYLCSDGASFTTGHALMVDGG 249 (253)
T ss_pred HHHHHhccCCCCCccCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 111122334556788999999999999999888999999999984
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=281.76 Aligned_cols=223 Identities=19% Similarity=0.269 Sum_probs=195.7
Q ss_pred CccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 80 ~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+.++.+|+++|||||++|||+++|.+|+++|+ ++++.+.+.+..++..++++..| +++.+.||+++.+++.+..++++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHH
Confidence 34588999999999999999999999999997 99999999988888888887664 89999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++.|.+|+||||||+. +...+.+.+.++++++|++|+.|+|+.+++++|.|.+.+ .|+||+|+|++|..
T Consensus 110 ~e~G~V~ILVNNAGI~-~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~--~GHIV~IaS~aG~~-------- 178 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIV-TGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN--NGHIVTIASVAGLF-------- 178 (300)
T ss_pred HhcCCceEEEeccccc-cCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC--CceEEEehhhhccc--------
Confidence 9999999999999998 556777899999999999999999999999999999976 58999999999986
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc--cCCceEEEEeeCCcccCCCCcccc
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|+.+|.++|..|+. ..+||+...|+|++++|.|+.. .
T Consensus 179 ---------------------------g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~-~ 230 (300)
T KOG1201|consen 179 ---------------------------GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG-A 230 (300)
T ss_pred ---------------------------CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC-C
Confidence 446888999999999999999999985 3468999999999999976653 2
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.+ ...+ ....+|+++|+.++..+...
T Consensus 231 ~~-~~~l---------~P~L~p~~va~~Iv~ai~~n 256 (300)
T KOG1201|consen 231 TP-FPTL---------APLLEPEYVAKRIVEAILTN 256 (300)
T ss_pred CC-Cccc---------cCCCCHHHHHHHHHHHHHcC
Confidence 22 1112 23579999999998877554
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=291.93 Aligned_cols=247 Identities=21% Similarity=0.212 Sum_probs=206.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|+++||||++|||+++++.|+++|+ +|++++|+.+..+...+++...+.++.+++||++|++++..+++++.+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999995 9999999988777777777655667899999999999999999999999
Q ss_pred CCCccEEEecCcccCCC--------------CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 162 GRPLDVLVCNAAVYLPT--------------AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~--------------~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
++++|+||||||...+. .++.+.+.++|++++++|+.+++++++.++|.|.+.+ .|+||++||.
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~ 162 (278)
T PRK08277 85 FGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK--GGNIINISSM 162 (278)
T ss_pred cCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccc
Confidence 99999999999975322 2355778899999999999999999999999998765 4799999999
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCc
Q 015844 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (399)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~ 307 (399)
++.. +.++...|++||+|++.|+++++.++ .++||+||+|+||+
T Consensus 163 ~~~~-----------------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~girvn~v~Pg~ 206 (278)
T PRK08277 163 NAFT-----------------------------------PLTKVPAYSAAKAAISNFTQWLAVHF-AKVGIRVNAIAPGF 206 (278)
T ss_pred hhcC-----------------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEecc
Confidence 8764 34567789999999999999999999 66799999999999
Q ss_pred ccCCCCccccch----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcC-CCCCCCceEEccCCC
Q 015844 308 IATTGLFREHIP----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKD 367 (399)
Q Consensus 308 v~T~~~~~~~~~----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~-~~~~~~G~~~~~dg~ 367 (399)
|+|++....... ............+.+++.+|+|+|++++||+++ .+.+++|+.+.+||.
T Consensus 207 v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG 271 (278)
T PRK08277 207 FLTEQNRALLFNEDGSLTERANKILAHTPMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGG 271 (278)
T ss_pred CcCcchhhhhccccccchhHHHHHhccCCccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCC
Confidence 999853211100 001111222345678889999999999999999 788999999999985
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=291.12 Aligned_cols=284 Identities=31% Similarity=0.427 Sum_probs=215.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.++.++..+++... +.++.++.+|++|.++++++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999987777666655422 4568899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.... ...+.++++..|++|+.|++.+++.+++.|++.+ .++||++||.++.....
T Consensus 91 ~~~~~iD~li~nAg~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~----- 160 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTP---KQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP--GSRVVTVSSGGHRIRAA----- 160 (306)
T ss_pred hhCCCCCEEEECCccccCC---CccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC--CCEEEEECCHHHhccCC-----
Confidence 9999999999999986432 3467889999999999999999999999998764 47999999987653110
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEe--eCCcccCCCCcccc
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASL--YPGCIATTGLFREH 317 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v--~PG~v~T~~~~~~~ 317 (399)
..+.+ .....++++...|+.||+++++|++.+++++ .+.|++++++ +||+|+|++. +..
T Consensus 161 --~~~~~---------------~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l-~~~~i~v~~v~~~PG~v~T~~~-~~~ 221 (306)
T PRK06197 161 --IHFDD---------------LQWERRYNRVAAYGQSKLANLLFTYELQRRL-AAAGATTIAVAAHPGVSNTELA-RNL 221 (306)
T ss_pred --CCccc---------------cCcccCCCcHHHHHHHHHHHHHHHHHHHHHh-hcCCCCeEEEEeCCCcccCccc-ccC
Confidence 00000 0111245667899999999999999999998 5668776655 7999999854 332
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc----cccccCcccCCHHHHHHHHHHHH
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS----FENQLSQEASDVEKARKVWEISE 393 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~----~~~~~~~~~~~~~~~~~lw~~~~ 393 (399)
...... .+.........+|++.+..+++++.++. ..+|.|+.+||.... .....+..+.|++.+++||++|+
T Consensus 222 ~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~~~ 297 (306)
T PRK06197 222 PRALRP---VATVLAPLLAQSPEMGALPTLRAATDPA-VRGGQYYGPDGFGEQRGYPKVVASSAQSHDEDLQRRLWAVSE 297 (306)
T ss_pred cHHHHH---HHHHHHhhhcCCHHHHHHHHHHHhcCCC-cCCCeEEccCcccccCCCCccCCCccccCCHHHHHHHHHHHH
Confidence 221111 1111111123578889988888887654 368999988874311 11244567889999999999999
Q ss_pred HHhcCC
Q 015844 394 KLVGLA 399 (399)
Q Consensus 394 ~~~~~~ 399 (399)
++++++
T Consensus 298 ~~~~~~ 303 (306)
T PRK06197 298 ELTGVS 303 (306)
T ss_pred HHHCCC
Confidence 999863
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=287.99 Aligned_cols=240 Identities=18% Similarity=0.134 Sum_probs=198.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.+++||++|+++++++++++.+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999996 9999999987777666655 3568899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||.... ..+ +.+.++|++++++|+.+++++++.++|.|+ ++ .|+||++||.++..
T Consensus 79 g~id~lv~~ag~~~~-~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~--~g~ii~isS~~~~~----------- 142 (261)
T PRK08265 79 GRVDILVNLACTYLD-DGL-ASSRADWLAALDVNLVSAAMLAQAAHPHLA-RG--GGAIVNFTSISAKF----------- 142 (261)
T ss_pred CCCCEEEECCCCCCC-CcC-cCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cC--CcEEEEECchhhcc-----------
Confidence 999999999998633 223 568899999999999999999999999997 32 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+++|++++.+++.++.++ .+.||+||+|+||+++|++..........
T Consensus 143 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~~~t~~~~~~~~~~~~ 197 (261)
T PRK08265 143 ------------------------AQTGRWLYPASKAAIRQLTRSMAMDL-APDGIRVNSVSPGWTWSRVMDELSGGDRA 197 (261)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cccCEEEEEEccCCccChhhhhhcccchh
Confidence 23456789999999999999999999 56799999999999999854321100000
Q ss_pred hhchhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...... ...+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 198 ~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 198 KADRVAAPFHLLGRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGG 243 (261)
T ss_pred HHHHhhcccCCCCCccCHHHHHHHHHHHcCccccCccCcEEEECCC
Confidence 111111 123567788999999999999999888999999999985
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=293.31 Aligned_cols=244 Identities=21% Similarity=0.173 Sum_probs=202.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..+++|++|||||++|||+++|+.|+++|+ +|+++.++. ...++..+.+...+.++.++.||++|.++++++++++.
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999996 888877653 23445555565556778899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||.......+.+.+.++|++++++|+.|+++++++++|.|.+ +++||++||..++.
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~~~iv~~sS~~~~~-------- 197 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP----GASIINTGSIQSYQ-------- 197 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc----CCEEEEECCccccC--------
Confidence 999999999999998644556778899999999999999999999999999865 36999999988764
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||++++.|++.++.++ .+.||+||+|+||+|+|++.......
T Consensus 198 ---------------------------~~~~~~~Y~asK~a~~~~~~~la~el-~~~gI~v~~v~PG~i~t~~~~~~~~~ 249 (300)
T PRK06128 198 ---------------------------PSPTLLDYASTKAAIVAFTKALAKQV-AEKGIRVNAVAPGPVWTPLQPSGGQP 249 (300)
T ss_pred ---------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEECcCcCCCcccCCCC
Confidence 33566789999999999999999998 56799999999999999854321111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++..|+|+|..++||+++...+++|+.+.+||.
T Consensus 250 -~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg 296 (300)
T PRK06128 250 -PEKIPDFGSETPMKRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGG 296 (300)
T ss_pred -HHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCccCcEEeeCCC
Confidence 11111112234667889999999999999999888999999999985
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=287.31 Aligned_cols=243 Identities=19% Similarity=0.174 Sum_probs=203.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||.+++++|+++|+ +|++++|+ ...+++.+.+...+.++.++.||+++.++++++++++.+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999996 89999988 45555555555456678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||... ..++.+.+.++|++++++|+.+++++++.++|.|++.+ .|+||++||..+..
T Consensus 90 g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 155 (258)
T PRK06935 90 GKIDILVNNAGTIR-RAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG--SGKIINIASMLSFQ----------- 155 (258)
T ss_pred CCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC--CeEEEEECCHHhcc-----------
Confidence 99999999999863 35666778999999999999999999999999998765 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+....|+++|++++.+++.+++++ .+.||+||+|+||+|+|++... ......
T Consensus 156 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~-~~~~~~ 209 (258)
T PRK06935 156 ------------------------GGKFVPAYTASKHGVAGLTKAFANEL-AAYNIQVNAIAPGYIKTANTAP-IRADKN 209 (258)
T ss_pred ------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeccccccchhh-cccChH
Confidence 23456789999999999999999999 6679999999999999985322 111111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|..++||+++.+.+++|+.+.+||.
T Consensus 210 ~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 210 RNDEILKRIPAGRWGEPDDLMGAAVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 112233345667889999999999999999888999999999984
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=288.77 Aligned_cols=241 Identities=19% Similarity=0.117 Sum_probs=198.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.++.+.+.+ +.++.++++|++|+++++++++++.+.+
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999995 9999999988777665554 3467889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhh----hhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEG----FELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~----~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+++|+||||||+.....++.+.+.++ |++++++|+.+++.+++.++|.|++. +|+||++||.++..
T Consensus 79 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~g~iv~~sS~~~~~------- 148 (263)
T PRK06200 79 GKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS---GGSMIFTLSNSSFY------- 148 (263)
T ss_pred CCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc---CCEEEEECChhhcC-------
Confidence 99999999999864334555566655 89999999999999999999998765 37999999988764
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.++ .+ +|+||+|+||+|+|++......
T Consensus 149 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~el-~~-~Irvn~i~PG~i~t~~~~~~~~ 198 (263)
T PRK06200 149 ----------------------------PGGGGPLYTASKHAVVGLVRQLAYEL-AP-KIRVNGVAPGGTVTDLRGPASL 198 (263)
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hc-CcEEEEEeCCccccCCcCcccc
Confidence 23456689999999999999999999 55 5999999999999985432110
Q ss_pred h--------hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCCC
Q 015844 319 P--------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~--------~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg~ 367 (399)
. ............|.+++.+|+|+|+.++||+++. +.+++|+.+.+||.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG 256 (263)
T PRK06200 199 GQGETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGG 256 (263)
T ss_pred CCCCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCc
Confidence 0 0001111223456788999999999999999998 88999999999984
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=285.69 Aligned_cols=239 Identities=19% Similarity=0.170 Sum_probs=199.5
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecC-----------hHHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRD-----------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
.+++|++|||||+ +|||+++|++|+++|+ +|++.+|+ .+...+..+++...+.++.++++|++|.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 5789999999999 4999999999999996 78876532 23333445556666778999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
+++++++++.+.++++|++|||||.. ...++.+.+.++|++++++|+.+++.+++.++|.|.+++ .|+||++||..+
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~ 158 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYS-TNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS--GGRIINMTSGQF 158 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEEccccc
Confidence 99999999999999999999999986 335677889999999999999999999999999998764 479999999887
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
.. +.+++..|++||++++.|+++++.++ .+.||+||+|+||+++
T Consensus 159 ~~-----------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~PG~i~ 202 (256)
T PRK12859 159 QG-----------------------------------PMVGELAYAATKGAIDALTSSLAAEV-AHLGITVNAINPGPTD 202 (256)
T ss_pred CC-----------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEEcccc
Confidence 63 44677899999999999999999998 5679999999999999
Q ss_pred CCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 310 TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 310 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|+++.... ........+.++..+|+|+|+.++|++++...+++|+++.+||.
T Consensus 203 t~~~~~~~------~~~~~~~~~~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~dgg 254 (256)
T PRK12859 203 TGWMTEEI------KQGLLPMFPFGRIGEPKDAARLIKFLASEEAEWITGQIIHSEGG 254 (256)
T ss_pred CCCCCHHH------HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 98542210 01122233456678999999999999999888999999999984
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=286.58 Aligned_cols=234 Identities=20% Similarity=0.184 Sum_probs=195.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.... .++.+++||++|+++++++++++.+.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~-----------~~~~~~~~D~~~~~~i~~~~~~~~~~~ 70 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSY-----------NDVDYFKVDVSNKEQVIKGIDYVISKY 70 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCcccc-----------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 999999985321 257889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|.+.+ .|+||++||..+..
T Consensus 71 ~~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 136 (258)
T PRK06398 71 GRIDILVNNAGIE-SYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD--KGVIINIASVQSFA----------- 136 (258)
T ss_pred CCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeCcchhcc-----------
Confidence 9999999999986 446677889999999999999999999999999998764 47999999988763
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc-----
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----- 317 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~----- 317 (399)
+.++...|++||++++.|++.++.|+ .+ +|+||+|+||+|+|++.....
T Consensus 137 ------------------------~~~~~~~Y~~sKaal~~~~~~la~e~-~~-~i~vn~i~PG~v~T~~~~~~~~~~~~ 190 (258)
T PRK06398 137 ------------------------VTRNAAAYVTSKHAVLGLTRSIAVDY-AP-TIRCVAVCPGSIRTPLLEWAAELEVG 190 (258)
T ss_pred ------------------------CCCCCchhhhhHHHHHHHHHHHHHHh-CC-CCEEEEEecCCccchHHhhhhhcccc
Confidence 34567799999999999999999998 45 499999999999998543211
Q ss_pred -chh--hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 318 -IPL--FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 318 -~~~--~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.+. ...........+.+++.+|+|+|+.++||+++...+++|+.+.+||..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 191 KDPEHVERKIREWGEMHPMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGGL 244 (258)
T ss_pred CChhhhHHHHHhhhhcCCcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCcc
Confidence 000 000111112335677889999999999999998889999999999853
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=283.27 Aligned_cols=244 Identities=19% Similarity=0.182 Sum_probs=201.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
||++|||||++|||++++++|+++|+ +|++++|+....++..+.+...+.++.++++|++|+++++++++++.+.++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57999999999999999999999995 99999999887777776665555678899999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||... ..++.+.+.++|++++++|+.++++++++++++|.+... .|+||++||..+..
T Consensus 80 d~lI~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~-------------- 143 (252)
T PRK07677 80 DALINNAAGNF-ICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGI-KGNIINMVATYAWD-------------- 143 (252)
T ss_pred cEEEECCCCCC-CCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-CEEEEEEcChhhcc--------------
Confidence 99999999753 346668899999999999999999999999999876432 47999999988763
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|++||+|+++|++.|+.++..+.||+|++|+||+|+|+++............
T Consensus 144 ---------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~ 202 (252)
T PRK07677 144 ---------------------AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAK 202 (252)
T ss_pred ---------------------CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHH
Confidence 22456689999999999999999998444699999999999997544322111111111
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
......+.+++.+|+|+|+.+.+|+++...+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 244 (252)
T PRK07677 203 RTIQSVPLGRLGTPEEIAGLAYFLLSDEAAYINGTCITMDGG 244 (252)
T ss_pred HHhccCCCCCCCCHHHHHHHHHHHcCccccccCCCEEEECCC
Confidence 222234556788999999999999998888899999999985
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=283.49 Aligned_cols=240 Identities=20% Similarity=0.204 Sum_probs=195.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc-
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS- 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~- 161 (399)
+++|++|||||++|||+++|+.|+++|+ +|++.. |+.+..++...++...+.++..+.+|+++.++++.+++++.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999995 787764 6666666666666655667888999999999999999887653
Q ss_pred ---CC--CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 162 ---GR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 162 ---~g--~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
++ ++|+||||||+. ...++.+.+.++|++++++|+.++++++++++|.|++. |+||++||.++..
T Consensus 81 ~~~~g~~~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~----g~iv~isS~~~~~----- 150 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIG-PGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN----SRIINISSAATRI----- 150 (252)
T ss_pred hhhcCCCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----CeEEEECCccccc-----
Confidence 33 899999999985 44567788899999999999999999999999999753 6999999998764
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+.++...|++||++++.+++.++.++ .+.||+||+|+||+|+|++...
T Consensus 151 ------------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~girvn~v~Pg~v~t~~~~~- 198 (252)
T PRK12747 151 ------------------------------SLPDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFIKTDMNAE- 198 (252)
T ss_pred ------------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hHcCCEEEEEecCCccCchhhh-
Confidence 33566789999999999999999999 6679999999999999985432
Q ss_pred cchhhhhhchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.... ........ ..+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 199 ~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 199 LLSD-PMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred cccC-HHHHHHHHhcCcccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCC
Confidence 1111 01111111 12456788999999999999998888999999999984
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=282.85 Aligned_cols=243 Identities=16% Similarity=0.170 Sum_probs=198.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.. .++..+++...+.++.++.+|++|.+++.++++++.+.+
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 47889999999999999999999999995 9999999853 344555555556678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||......++.+.+.++|++.+++|+.+++++++.++|.|.+.+ .|+||++||.++..
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~----------- 149 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG--GGAIVNVSSIATRG----------- 149 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEcCccccC-----------
Confidence 99999999999753345677889999999999999999999999999998764 47999999986541
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc--c---
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE--H--- 317 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~--~--- 317 (399)
.+...|++||++++.|++.++.++ .+.||+||+|+||+|+|++.... .
T Consensus 150 --------------------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 202 (260)
T PRK12823 150 --------------------------INRVPYSAAKGGVNALTASLAFEY-AEHGIRVNAVAPGGTEAPPRRVPRNAAPQ 202 (260)
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccCCcchhhHHhhccc
Confidence 123479999999999999999998 56799999999999999842110 0
Q ss_pred ch-----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IP-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~-----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 257 (260)
T PRK12823 203 SEQEKAWYQQIVDQTLDSSLMKRYGTIDEQVAAILFLASDEASYITGTVLPVGGG 257 (260)
T ss_pred cccccccHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCcccccccCcEEeecCC
Confidence 00 001111122234567788999999999999999888899999999874
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=280.06 Aligned_cols=243 Identities=19% Similarity=0.223 Sum_probs=198.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||.++|++|+++|+ +|++++|+.. .+..+.+...+.++.++.+|+++.+++.++++++.+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 9999998752 23333444445678899999999999999999999988
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||.... ..+.+.+.++|++++++|+.+++++++.+++.|.+++. .|+||++||..+..
T Consensus 79 ~~~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~----------- 145 (248)
T TIGR01832 79 GHIDILVNNAGIIRR-ADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGR-GGKIINIASMLSFQ----------- 145 (248)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CeEEEEEecHHhcc-----------
Confidence 999999999998643 45667788999999999999999999999999976531 37999999987763
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+....|++||++++.+++.++.++ .++||+||+|+||+|+|++... ..+...
T Consensus 146 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~-~~~~~~ 199 (248)
T TIGR01832 146 ------------------------GGIRVPSYTASKHGVAGLTKLLANEW-AAKGINVNAIAPGYMATNNTQA-LRADED 199 (248)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-CccCcEEEEEEECcCcCcchhc-cccChH
Confidence 22345689999999999999999998 6779999999999999985432 111111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++||+++...+++|+++.+||.
T Consensus 200 ~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 244 (248)
T TIGR01832 200 RNAAILERIPAGRWGTPDDIGGPAVFLASSASDYVNGYTLAVDGG 244 (248)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCcEEEeCCC
Confidence 111223344567889999999999999999888999999999984
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=284.25 Aligned_cols=241 Identities=16% Similarity=0.156 Sum_probs=193.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++||||++|||+++|+.|+++|+ +|++++|+.+.++++.+. .+.++.++.+|++|.+++.++++++.+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAA---HGDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhh---cCCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999995 999999998766655432 24568889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCCh----hhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTA----EGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~----~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+++|+||||||+.....++.+.+. ++|++++++|+.++++++++++|.|.+.+ |+||+++|..+..
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~~sS~~~~~------- 147 (262)
T TIGR03325 78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR---GSVIFTISNAGFY------- 147 (262)
T ss_pred CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC---CCEEEEeccceec-------
Confidence 999999999997533333333333 57999999999999999999999997643 6899999987764
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|++.|++.++.++ .+. |+||+|+||+|+|++......
T Consensus 148 ----------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~-irvn~i~PG~i~t~~~~~~~~ 197 (262)
T TIGR03325 148 ----------------------------PNGGGPLYTAAKHAVVGLVKELAFEL-APY-VRVNGVAPGGMSSDLRGPKSL 197 (262)
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHhh-ccC-eEEEEEecCCCcCCCcccccc
Confidence 23456689999999999999999999 554 999999999999986432111
Q ss_pred hhhh------hhchh-hHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCCC
Q 015844 319 PLFR------LLFPP-FQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~------~~~~~-~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg~ 367 (399)
.... ..... ....|.+++.+|+|+|+.++||+++. ..+++|+.+.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg 254 (262)
T TIGR03325 198 GMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGG 254 (262)
T ss_pred ccccccccccchhhhhhhcCCCCCCCChHHhhhheeeeecCCCcccccceEEEecCC
Confidence 0000 00111 12356788999999999999999975 46799999999984
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=286.88 Aligned_cols=231 Identities=23% Similarity=0.266 Sum_probs=196.2
Q ss_pred cCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHHcC-CCccEE
Q 015844 93 GAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSG-RPLDVL 168 (399)
Q Consensus 93 G~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~id~l 168 (399)
|++ +|||+++|+.|+++|+ +|++++|+.++.+...+++.. .+.+ ++.||++++++++++++++.+.+ |+||+|
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGA-NVILTDRNEEKLADALEELAKEYGAE--VIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTE-EEEEEESSHHHHHHHHHHHHHHTTSE--EEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHHHcCCc--eEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 566 9999999999999996 999999999876555555433 2333 59999999999999999999998 999999
Q ss_pred EecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 169 VCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 169 v~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|||+|.... ..++.+.+.++|++.+++|+.+++.+++++.|+|.+. |+||++||..+..
T Consensus 78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gsii~iss~~~~~-------------- 139 (241)
T PF13561_consen 78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG----GSIINISSIAAQR-------------- 139 (241)
T ss_dssp EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE----EEEEEEEEGGGTS--------------
T ss_pred EecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCcccccchhhcc--------------
Confidence 999998643 3566778899999999999999999999999988874 6999999998763
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccC-CceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~-~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
+.+++..|+++|+|++.|++.++.|| .+ +|||||+|+||+|+|++. ..........
T Consensus 140 ---------------------~~~~~~~y~~sKaal~~l~r~lA~el-~~~~gIrVN~V~pG~i~t~~~-~~~~~~~~~~ 196 (241)
T PF13561_consen 140 ---------------------PMPGYSAYSASKAALEGLTRSLAKEL-APKKGIRVNAVSPGPIETPMT-ERIPGNEEFL 196 (241)
T ss_dssp ---------------------BSTTTHHHHHHHHHHHHHHHHHHHHH-GGHGTEEEEEEEESSBSSHHH-HHHHTHHHHH
T ss_pred ---------------------cCccchhhHHHHHHHHHHHHHHHHHh-ccccCeeeeeecccceeccch-hccccccchh
Confidence 45677799999999999999999999 66 799999999999999853 2222222333
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......|.+++.+|+|+|++++||+++.+.++||+.|.+||.
T Consensus 197 ~~~~~~~pl~r~~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 197 EELKKRIPLGRLGTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHSTTSSHBEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred hhhhhhhccCCCcCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 4455677889989999999999999999999999999999984
|
... |
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=280.99 Aligned_cols=243 Identities=20% Similarity=0.166 Sum_probs=203.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||+++++.|+++|+ +|++++|+.+..+....++...+.++.++++|++++++++++++++.++++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999995 99999999887777777776556678899999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||+. ...++.+.+.++|++++++|+.+++.+++.+++.|++.+. +++||++||..+..
T Consensus 81 d~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~-------------- 144 (256)
T PRK08643 81 NVVVNNAGVA-PTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGH-GGKIINATSQAGVV-------------- 144 (256)
T ss_pred CEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECcccccc--------------
Confidence 9999999986 4456677889999999999999999999999999976532 47999999988764
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-------
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI------- 318 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~------- 318 (399)
+.++...|+++|++++.|++.++.++ .+.||+||+|+||+++|+++.....
T Consensus 145 ---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~ 202 (256)
T PRK08643 145 ---------------------GNPELAVYSSTKFAVRGLTQTAARDL-ASEGITVNAYAPGIVKTPMMFDIAHQVGENAG 202 (256)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcChhhhHHHhhhccccC
Confidence 23456789999999999999999998 6679999999999999986532110
Q ss_pred -hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+............+.+++.+|+|+|+.+.||+++...+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg 252 (256)
T PRK08643 203 KPDEWGMEQFAKDITLGRLSEPEDVANCVSFLAGPDSDYITGQTIIVDGG 252 (256)
T ss_pred CCchHHHHHHhccCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 0000011122334567788999999999999999988999999999984
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=280.79 Aligned_cols=245 Identities=21% Similarity=0.232 Sum_probs=206.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|++|+++|+ +|++.+|+.++.++..+.+...+.++.++.+|++|.++++++++++.+.
T Consensus 6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 6 FDLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred cCCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999995 9999999988877777777655667899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||... ..++.+.+.++|++++++|+.+++++++.+.+.|.+++ .|+||++||..+..
T Consensus 85 ~~~~d~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~---------- 151 (255)
T PRK07523 85 IGPIDILVNNAGMQF-RTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARG--AGKIINIASVQSAL---------- 151 (255)
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--CeEEEEEccchhcc----------
Confidence 999999999999863 45677889999999999999999999999999998764 47999999987653
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+++|++++.+++.++.++ ++.||+||+|+||+++|++... .....
T Consensus 152 -------------------------~~~~~~~y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~-~~~~~ 204 (255)
T PRK07523 152 -------------------------ARPGIAPYTATKGAVGNLTKGMATDW-AKHGLQCNAIAPGYFDTPLNAA-LVADP 204 (255)
T ss_pred -------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcccCchhhh-hccCH
Confidence 33567789999999999999999998 5679999999999999985432 11111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++..|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 250 (255)
T PRK07523 205 EFSAWLEKRTPAGRWGKVEELVGACVFLASDASSFVNGHVLYVDGG 250 (255)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCC
Confidence 1111122234567788999999999999999888999999999884
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=280.83 Aligned_cols=242 Identities=18% Similarity=0.180 Sum_probs=194.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||+++|+.|+++|+ +|+++.++.+... +.+... .+.++.+|++|+++++++++++.+.+
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~---~~l~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEA---KELREK--GVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHH---HHHHhC--CCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999996 8877766543222 122211 46789999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.+++++++.++|.|++.+ .|+||++||..+..
T Consensus 78 ~~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~----------- 143 (255)
T PRK06463 78 GRVDVLVNNAGIM-YLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK--NGAIVNIASNAGIG----------- 143 (255)
T ss_pred CCCCEEEECCCcC-CCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHhCC-----------
Confidence 9999999999986 345666788999999999999999999999999998654 47999999987752
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-h
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-F 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~ 321 (399)
.+.++...|++||+|+++|+++++.|+ .+.||+||+|+||+|+|++......+. .
T Consensus 144 -----------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~ 199 (255)
T PRK06463 144 -----------------------TAAEGTTFYAITKAGIIILTRRLAFEL-GKYGIRVNAVAPGWVETDMTLSGKSQEEA 199 (255)
T ss_pred -----------------------CCCCCccHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCCCchhhcccCccch
Confidence 022456789999999999999999998 567999999999999998653221111 0
Q ss_pred hhh-chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 RLL-FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 ~~~-~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
... .....+.+.+++.+|+|+|+.++||+++...+++|+.+.+||..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 200 EKLRELFRNKTVLKTTGKPEDIANIVLFLASDDARYITGQVIVADGGR 247 (255)
T ss_pred HHHHHHHHhCCCcCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 111 11223345567889999999999999998889999999999853
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=279.54 Aligned_cols=243 Identities=19% Similarity=0.146 Sum_probs=203.0
Q ss_pred ccCCCEEEEEcCCC-hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CC-CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASS-GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AK-ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~-gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~-~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+++|++|||||+| |||+++++.|+++|+ +|++++|+.++.++..+++.. .+ .++.++++|++++++++++++++.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 56789999999985 999999999999995 899999998777777666643 23 468889999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||... ...+.+.+.++|++++++|+.+++.+++.++|.|+.... .|+||++||..+..
T Consensus 93 ~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~ss~~~~~-------- 162 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGG-QTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGH-GGVIVNNASVLGWR-------- 162 (262)
T ss_pred HHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhcC--------
Confidence 98999999999999853 456778899999999999999999999999999987541 37999999987763
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|+++|+|++++++.++.|+ .++||+||+|+||+++|+++.....+
T Consensus 163 ---------------------------~~~~~~~Y~~sKaal~~~~~~la~e~-~~~gI~v~~i~Pg~~~t~~~~~~~~~ 214 (262)
T PRK07831 163 ---------------------------AQHGQAHYAAAKAGVMALTRCSALEA-AEYGVRINAVAPSIAMHPFLAKVTSA 214 (262)
T ss_pred ---------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccCcccccccCH
Confidence 23466789999999999999999998 67799999999999999865332111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..........+.+++.+|+|+|+.++||+++.+.+++|+.+.+|+
T Consensus 215 --~~~~~~~~~~~~~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~~ 259 (262)
T PRK07831 215 --ELLDELAAREAFGRAAEPWEVANVIAFLASDYSSYLTGEVVSVSS 259 (262)
T ss_pred --HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCceEEeCC
Confidence 111122233456788999999999999999998899999999887
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=279.86 Aligned_cols=246 Identities=20% Similarity=0.213 Sum_probs=206.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++++++|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++... +.++.++.||++++++++++++++
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999995 9999999988877777766543 567889999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.++++|+||||||.. ...++.+.+.++|++++++|+.++++++++++|+|++++ .++||++||..+..
T Consensus 83 ~~~~g~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~~------- 152 (257)
T PRK09242 83 EDHWDGLHILVNNAGGN-IRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA--SSAIVNIGSVSGLT------- 152 (257)
T ss_pred HHHcCCCCEEEECCCCC-CCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CceEEEECccccCC-------
Confidence 99999999999999985 334566789999999999999999999999999998764 47999999988763
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|+++|++++.|++.++.++ .+.||++++|+||+|+|++... ..
T Consensus 153 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~i~t~~~~~-~~ 202 (257)
T PRK09242 153 ----------------------------HVRSGAPYGMTKAALLQMTRNLAVEW-AEDGIRVNAVAPWYIRTPLTSG-PL 202 (257)
T ss_pred ----------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEECCCCCccccc-cc
Confidence 33566789999999999999999998 5679999999999999985432 21
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+.+++.+|+|++..+.||+++...+++|+.+..||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 251 (257)
T PRK09242 203 SDPDYYEQVIERTPMRRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGG 251 (257)
T ss_pred CChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 1111112223344556788999999999999998777899999999885
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=308.65 Aligned_cols=241 Identities=20% Similarity=0.203 Sum_probs=202.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
...+|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++ +.++..+.+|++|+++++++++++.+.+
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---GDEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999995 9999999988777776655 3467789999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.....++.+.+.++|++++++|+.|++++++.++|+|.+ .|+||++||.++..
T Consensus 342 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~iv~isS~~~~~----------- 406 (520)
T PRK06484 342 GRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQ----GGVIVNLGSIASLL----------- 406 (520)
T ss_pred CCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhcc----CCEEEEECchhhcC-----------
Confidence 999999999998644456678899999999999999999999999999932 47999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+++++|++.++.++ .+.||+||+|+||+|+|++..........
T Consensus 407 ------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~~ 461 (520)
T PRK06484 407 ------------------------ALPPRNAYCASKAAVTMLSRSLACEW-APAGIRVNTVAPGYIETPAVLALKASGRA 461 (520)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCchhhhhccccHH
Confidence 34567899999999999999999999 66799999999999999864321110001
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 462 ~~~~~~~~~~~~~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 462 DFDSIRRRIPLGRLGDPEEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 111222344567788999999999999998888999999999985
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=280.20 Aligned_cols=246 Identities=19% Similarity=0.192 Sum_probs=206.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++.+|+++||||++|||++++++|+++|+ +|++.+|+.++.++..+.+...+.++.+++||++|.++++++++++.+.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999995 8999999988887777777666678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.|++.+++.++|+|++.+ .|+||++||..+..
T Consensus 85 ~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 151 (265)
T PRK07097 85 VGVIDILVNNAGIIK-RIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG--HGKIINICSMMSEL---------- 151 (265)
T ss_pred CCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCccccC----------
Confidence 999999999999864 35667889999999999999999999999999998764 57999999987764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--- 318 (399)
+.++...|+++|++++.|++.++.++ .+.||+|++|+||.|+|++......
T Consensus 152 -------------------------~~~~~~~Y~~sKaal~~l~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 205 (265)
T PRK07097 152 -------------------------GRETVSAYAAAKGGLKMLTKNIASEY-GEANIQCNGIGPGYIATPQTAPLRELQA 205 (265)
T ss_pred -------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCceEEEEEeccccccchhhhhhccc
Confidence 23456789999999999999999999 6679999999999999985432111
Q ss_pred h-h-hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 P-L-FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~-~-~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. . ...........+..++.+|+|+|+.+++++++...+++|+.+.+||.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 256 (265)
T PRK07097 206 DGSRHPFDQFIIAKTPAARWGDPEDLAGPAVFLASDASNFVNGHILYVDGG 256 (265)
T ss_pred cccchhHHHHHHhcCCccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence 0 0 00000112233456788999999999999999888899999999985
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=277.81 Aligned_cols=242 Identities=18% Similarity=0.179 Sum_probs=203.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||+++++.|+++|+ +|++++|+.+..+....++...+.++.++.+|++|.++++++++.+.+.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999996 89999999887777777666556678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||.... .++ +.+.++|++.+++|+.+++++++++.|.|.+.+ .++||++||.++..
T Consensus 87 ~~~d~li~~ag~~~~-~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 151 (255)
T PRK06113 87 GKVDILVNNAGGGGP-KPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAEN----------- 151 (255)
T ss_pred CCCCEEEECCCCCCC-CCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CcEEEEEecccccC-----------
Confidence 999999999998643 334 578899999999999999999999999997654 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+|+++|++.++.++ .+.||+||+|+||+++|++......+..
T Consensus 152 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~- 205 (255)
T PRK06113 152 ------------------------KNINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEI- 205 (255)
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecccccccccccccCHHH-
Confidence 33456789999999999999999998 5679999999999999986533222211
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+.+++.+|+|+++.+++|+++...+++|+++.+||.
T Consensus 206 -~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg 249 (255)
T PRK06113 206 -EQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_pred -HHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 11122334456788999999999999998888999999999985
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=278.67 Aligned_cols=246 Identities=20% Similarity=0.171 Sum_probs=203.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+ .+..+...+++...+.++.++.+|++|.+++.++++.+.+.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999996 78887774 44555566666555677889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|++|||||... ..++.+.+.++|++++++|+.+++++++.+++.|.+... .|+||++||..+..
T Consensus 83 ~g~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~-~g~iv~~sS~~~~~---------- 150 (261)
T PRK08936 83 FGTLDVMINNAGIEN-AVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDI-KGNIINMSSVHEQI---------- 150 (261)
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEccccccC----------
Confidence 999999999999864 345667889999999999999999999999999987542 47999999987653
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+++..|+++|+|+..+++.++.++ .+.||+|++|+||+|+|++....... .
T Consensus 151 -------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~ 203 (261)
T PRK08936 151 -------------------------PWPLFVHYAASKGGVKLMTETLAMEY-APKGIRVNNIGPGAINTPINAEKFAD-P 203 (261)
T ss_pred -------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECcCCCCccccccCC-H
Confidence 34667789999999999999999999 56799999999999999854322111 1
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..........+.+++.+|+|+++.+.||+++...+++|+++.+||..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g~ 250 (261)
T PRK08936 204 KQRADVESMIPMGYIGKPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccCcEEEECCCc
Confidence 11111223345577889999999999999998889999999999853
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=279.81 Aligned_cols=242 Identities=21% Similarity=0.194 Sum_probs=199.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++++|++|||||++|||+++++.|+++|+ +|++++|+.++.++..+++... +.++.++.+|++|+++++++++.
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~--- 78 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE--- 78 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH---
Confidence 357899999999999999999999999996 9999999988877777666543 45788999999999999888764
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++++|++|||||+. ...++.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||..+..
T Consensus 79 -~g~id~lv~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~iss~~~~~--------- 145 (259)
T PRK06125 79 -AGDIDILVNNAGAI-PGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG--SGVIVNVIGAAGEN--------- 145 (259)
T ss_pred -hCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEecCccccC---------
Confidence 47899999999986 445777889999999999999999999999999998764 47999999987653
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.+++..|+++|+|++.|+++++.|+ .+.||+||+|+||+++|+++.....
T Consensus 146 --------------------------~~~~~~~y~ask~al~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~ 198 (259)
T PRK06125 146 --------------------------PDADYICGSAGNAALMAFTRALGGKS-LDDGVRVVGVNPGPVATDRMLTLLKGR 198 (259)
T ss_pred --------------------------CCCCchHhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccHHHHHHHHhh
Confidence 33456789999999999999999998 6779999999999999985421100
Q ss_pred -----hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -----PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -----~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg 252 (259)
T PRK06125 199 ARAELGDESRWQELLAGLPLGRPATPEEVADLVAFLASPRSGYTSGTVVTVDGG 252 (259)
T ss_pred hhcccCCHHHHHHHhccCCcCCCcCHHHHHHHHHHHcCchhccccCceEEecCC
Confidence 0001111122334567788999999999999998888999999999984
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=280.10 Aligned_cols=246 Identities=17% Similarity=0.165 Sum_probs=199.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++.. +.++.++++|++|.++++++++.+.+.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999995 999999987776666666632 457889999999999999999999999
Q ss_pred CCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++++|+||||||.... ...+.+.+.++|++++++|+.|++++++++++.|.+.+ .|+||++||.++..+
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~ii~isS~~~~~~-------- 161 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLK--KGSIVSLCSVASAIG-------- 161 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CceEEEecChhhccc--------
Confidence 9999999999998643 23466788999999999999999999999999997654 479999999887642
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.++...|++||++++.+++.++.++ .++||+|++|+||.++|++........
T Consensus 162 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~~~~~~~ 213 (280)
T PLN02253 162 ---------------------------GLGPHAYTGSKHAVLGLTRSVAAEL-GKHGIRVNCVSPYAVPTALALAHLPED 213 (280)
T ss_pred ---------------------------CCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccccccccccccc
Confidence 2345689999999999999999999 567999999999999998543221110
Q ss_pred h--hhhchhhH-----HHH-hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 F--RLLFPPFQ-----KYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~--~~~~~~~~-----~~~-~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ......+. ..+ .++..+|+|+|+.++|++++...+++|+.+.+||.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG 268 (280)
T PLN02253 214 ERTEDALAGFRAFAGKNANLKGVELTVDDVANAVLFLASDEARYISGLNLMIDGG 268 (280)
T ss_pred cchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHHhhcCcccccccCcEEEECCc
Confidence 0 00000010 011 13457999999999999999888999999999985
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=257.08 Aligned_cols=238 Identities=18% Similarity=0.180 Sum_probs=207.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|+.+++||+..|||+++++.|++.|| .|+.+.|+++.+..+.++.. .-+..++.|+++++.+.+.+.. .
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p---~~I~Pi~~Dls~wea~~~~l~~----v 75 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETP---SLIIPIVGDLSAWEALFKLLVP----V 75 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCC---cceeeeEecccHHHHHHHhhcc----c
Confidence 57899999999999999999999999997 99999999998888877642 4488899999998877666543 4
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||+. ...++.+++.+.|++.|++|+.+.+++.|...+.+..+.. +|.|||+||.++..
T Consensus 76 ~pidgLVNNAgvA-~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~-~GaIVNvSSqas~R----------- 142 (245)
T KOG1207|consen 76 FPIDGLVNNAGVA-TNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQI-KGAIVNVSSQASIR----------- 142 (245)
T ss_pred Cchhhhhccchhh-hcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccC-CceEEEecchhccc-----------
Confidence 6899999999997 5578889999999999999999999999998887776654 47899999998873
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
++.+...||++|+|++++++.|+.|+ .+++||||+|+|-.|.|+|-..++.. ..
T Consensus 143 ------------------------~~~nHtvYcatKaALDmlTk~lAlEL-Gp~kIRVNsVNPTVVmT~MG~dnWSD-P~ 196 (245)
T KOG1207|consen 143 ------------------------PLDNHTVYCATKAALDMLTKCLALEL-GPQKIRVNSVNPTVVMTDMGRDNWSD-PD 196 (245)
T ss_pred ------------------------ccCCceEEeecHHHHHHHHHHHHHhh-CcceeEeeccCCeEEEecccccccCC-ch
Confidence 66788899999999999999999999 78899999999999999866555433 24
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+-..++.+.|.+++...+|+.++++||+++.+...+|..++++|.
T Consensus 197 K~k~mL~riPl~rFaEV~eVVnA~lfLLSd~ssmttGstlpveGG 241 (245)
T KOG1207|consen 197 KKKKMLDRIPLKRFAEVDEVVNAVLFLLSDNSSMTTGSTLPVEGG 241 (245)
T ss_pred hccchhhhCchhhhhHHHHHHhhheeeeecCcCcccCceeeecCC
Confidence 445677889999999999999999999999999999999999884
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=287.41 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=182.2
Q ss_pred cccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh----------ccCCC-----cEEEEEec
Q 015844 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA----------GMAKE-----NYTIMHLD 144 (399)
Q Consensus 82 ~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~----------~~~~~-----~~~~~~~D 144 (399)
..++||++||||++ +|||+++|+.|+++|+ +|++.++.+ .+....+.. ...+. ++..+.+|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga-~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 81 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGA-TILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDAS 81 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCC-EEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhhh
Confidence 36789999999996 9999999999999997 888876531 011000000 00011 11112233
Q ss_pred CCCH------------------HHHHHHHHHHHHcCCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHH
Q 015844 145 LASL------------------DSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (399)
Q Consensus 145 vs~~------------------~~v~~~~~~~~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 205 (399)
+++. ++++++++++.+++|++|+||||||.... ..++.+++.++|+++|++|+.|++++++
T Consensus 82 ~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~ 161 (299)
T PRK06300 82 FDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLS 161 (299)
T ss_pred cCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 3333 46899999999999999999999997532 3567789999999999999999999999
Q ss_pred HHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh-hhHHHhHHHHHHH
Q 015844 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 284 (399)
Q Consensus 206 ~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~ 284 (399)
+++|+|+++ |+||+++|..+.. +.++. ..|++||+|+++|
T Consensus 162 a~~p~m~~~----G~ii~iss~~~~~-----------------------------------~~p~~~~~Y~asKaAl~~l 202 (299)
T PRK06300 162 HFGPIMNPG----GSTISLTYLASMR-----------------------------------AVPGYGGGMSSAKAALESD 202 (299)
T ss_pred HHHHHhhcC----CeEEEEeehhhcC-----------------------------------cCCCccHHHHHHHHHHHHH
Confidence 999999753 6999999988764 22344 3799999999999
Q ss_pred HHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 285 ~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
++.|+.|+..++|||||+|+||.|+|++... ...............+.++..+|+|+|..++||+++...+++|+.+.+
T Consensus 203 t~~la~el~~~~gIrVn~V~PG~v~T~~~~~-~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~v 281 (299)
T PRK06300 203 TKVLAWEAGRRWGIRVNTISAGPLASRAGKA-IGFIERMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETLYV 281 (299)
T ss_pred HHHHHHHhCCCCCeEEEEEEeCCccChhhhc-ccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEE
Confidence 9999999943359999999999999985422 110001111112234567788999999999999999888999999999
Q ss_pred CCC
Q 015844 365 NKD 367 (399)
Q Consensus 365 dg~ 367 (399)
||.
T Consensus 282 dGG 284 (299)
T PRK06300 282 DHG 284 (299)
T ss_pred CCC
Confidence 985
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=276.07 Aligned_cols=246 Identities=21% Similarity=0.220 Sum_probs=207.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++.+++|+++||||++|||++++++|+++|+ +|++++|+.+.++...++++..+.++.++.||+++++++.++++++.+
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4568899999999999999999999999995 999999998877777777766667789999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|++|||||... ..++.+.+.++|++.+++|+.+++.+++.+++.|.+.+ .++||++||..+..
T Consensus 85 ~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~--------- 152 (256)
T PRK06124 85 EHGRLDILVNNVGARD-RRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG--YGRIIAITSIAGQV--------- 152 (256)
T ss_pred hcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEeechhcc---------
Confidence 9999999999999864 35667788999999999999999999999999997765 47999999988764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|+++|+++..+++.++.++ .+.||+|++|+||+++|++......+
T Consensus 153 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~~~~~- 204 (256)
T PRK06124 153 --------------------------ARAGDAVYPAAKQGLTGLMRALAAEF-GPHGITSNAIAPGYFATETNAAMAAD- 204 (256)
T ss_pred --------------------------CCCCccHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEECCccCcchhhhccC-
Confidence 33567899999999999999999998 56699999999999999853221111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|++..+++|++++..+++|+++.+||.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg 251 (256)
T PRK06124 205 PAVGPWLAQRTPLGRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGG 251 (256)
T ss_pred hHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCcCCCEEEECCC
Confidence 11111122233556788999999999999999988999999999984
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=280.17 Aligned_cols=258 Identities=20% Similarity=0.166 Sum_probs=191.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++||||+ +|||+++|++|+ +|+ +|++++|+.+++++..+++...+.++.+++||++|+++++++++++ ++++++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA-QTLGPV 77 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-HhcCCC
Confidence 579999998 699999999996 794 9999999988777777777655667889999999999999999988 567899
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC-CCCCCCCCCCc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT-LAGNVPPKANL 244 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~-~~~~~~~~~~~ 244 (399)
|+||||||+.. ..++|++++++|+.|++++++.+.|.|.+. |++|++||.++.... +.....+....
T Consensus 78 d~li~nAG~~~--------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~----g~iv~isS~~~~~~~~~~~~~~~~~~~ 145 (275)
T PRK06940 78 TGLVHTAGVSP--------SQASPEAILKVDLYGTALVLEEFGKVIAPG----GAGVVIASQSGHRLPALTAEQERALAT 145 (275)
T ss_pred CEEEECCCcCC--------chhhHHHHHHHhhHHHHHHHHHHHHHHhhC----CCEEEEEecccccCcccchhhhccccc
Confidence 99999999742 236799999999999999999999999753 588999998876421 00000000000
Q ss_pred cccccccCCCCCCCCCCCCCCC-CCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-hh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FR 322 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~~ 322 (399)
.+... +.. .+..... ..+++..|++||+|++.+++.++.++ .++||+||+|+||+|+|++........ ..
T Consensus 146 ~~~~~----~~~---~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~ 217 (275)
T PRK06940 146 TPTEE----LLS---LPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKW-GERGARINSISPGIISTPLAQDELNGPRGD 217 (275)
T ss_pred ccccc----ccc---cccccccccCCccchhHHHHHHHHHHHHHHHHHH-ccCCeEEEEeccCcCcCccchhhhcCCchH
Confidence 00000 000 0000000 01346789999999999999999999 667999999999999998643211110 01
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|||+|+.++||+++...+++|+.+.+||.
T Consensus 218 ~~~~~~~~~p~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg 262 (275)
T PRK06940 218 GYRNMFAKSPAGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGG 262 (275)
T ss_pred HHHHHhhhCCcccCCCHHHHHHHHHHHcCcccCcccCceEEEcCC
Confidence 111233345678899999999999999999889999999999985
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=275.37 Aligned_cols=238 Identities=18% Similarity=0.169 Sum_probs=196.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++++.|+++|+ +|++++|+.+. ...+.++.++++|++++++++++++.+.+.
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE--------TVDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh--------hhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 99999998654 112456889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+. ....+.+.+.++|++++++|+.+++++++.+.+.|.++. ..|+||++||..+..
T Consensus 73 ~~~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~g~ii~isS~~~~~---------- 140 (252)
T PRK07856 73 HGRLDVLVNNAGGS-PYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQP-GGGSIVNIGSVSGRR---------- 140 (252)
T ss_pred cCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcccccCC----------
Confidence 99999999999986 345566788999999999999999999999999987643 147999999988763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.++ .+. |++|+|+||+|+|++..... ...
T Consensus 141 -------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~-i~v~~i~Pg~v~t~~~~~~~-~~~ 192 (252)
T PRK07856 141 -------------------------PSPGTAAYGAAKAGLLNLTRSLAVEW-APK-VRVNAVVVGLVRTEQSELHY-GDA 192 (252)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCC-eEEEEEEeccccChHHhhhc-cCH
Confidence 34567889999999999999999998 555 99999999999998543211 111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..........+.+++.+|+|+|+.++||+++...+++|+.+.+||..
T Consensus 193 ~~~~~~~~~~~~~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~ 239 (252)
T PRK07856 193 EGIAAVAATVPLGRLATPADIAWACLFLASDLASYVSGANLEVHGGG 239 (252)
T ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCccCCEEEECCCc
Confidence 11111222345677889999999999999988889999999999854
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=273.44 Aligned_cols=240 Identities=22% Similarity=0.176 Sum_probs=200.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|++|||||++|||+++|++|+++|+ +|+++. |+.+..+...+++...+.++.++.+|+++.++++++++++.+.+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999995 887765 5666666666777666778999999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||.... ..+.+.+.++|++++++|+.+++++++++.++|.+++. +|+||++||..+..
T Consensus 81 id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~~------------- 145 (256)
T PRK12743 81 IDVLVNNAGAMTK-APFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQ-GGRIINITSVHEHT------------- 145 (256)
T ss_pred CCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEEeeccccC-------------
Confidence 9999999998643 45667889999999999999999999999999976532 47999999987653
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
+.++...|+++|++++.++++++.++ .+.||+|++|+||+++|++.... .. ...
T Consensus 146 ----------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~Pg~~~t~~~~~~-~~--~~~ 199 (256)
T PRK12743 146 ----------------------PLPGASAYTAAKHALGGLTKAMALEL-VEHGILVNAVAPGAIATPMNGMD-DS--DVK 199 (256)
T ss_pred ----------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCcccccc-Ch--HHH
Confidence 34567799999999999999999998 56799999999999999854321 11 111
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......+..+..+|+|+|+.+.|++++...+++|.++.+||.
T Consensus 200 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg 242 (256)
T PRK12743 200 PDSRPGIPLGRPGDTHEIASLVAWLCSEGASYTTGQSLIVDGG 242 (256)
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 1122334556778999999999999999888899999999996
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=282.16 Aligned_cols=237 Identities=17% Similarity=0.180 Sum_probs=197.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.++++|++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++.. +.++..+.||++|.++++++++++.+.
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999996 999999999888887777653 456777889999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|.+. .|+||++||.++..
T Consensus 83 ~g~id~vI~nAG~~~-~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~---------- 148 (296)
T PRK05872 83 FGGIDVVVANAGIAS-GGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER---RGYVLQVSSLAAFA---------- 148 (296)
T ss_pred cCCCCEEEECCCcCC-CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEEeCHhhcC----------
Confidence 999999999999864 5677788999999999999999999999999999775 37999999988774
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.++ .+.||+|++|+||+++|++..... ...
T Consensus 149 -------------------------~~~~~~~Y~asKaal~~~~~~l~~e~-~~~gi~v~~v~Pg~v~T~~~~~~~-~~~ 201 (296)
T PRK05872 149 -------------------------AAPGMAAYCASKAGVEAFANALRLEV-AHHGVTVGSAYLSWIDTDLVRDAD-ADL 201 (296)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-HHHCcEEEEEecCcccchhhhhcc-ccc
Confidence 34567899999999999999999998 567999999999999998653321 111
Q ss_pred hhhchhhHH--HHhcCCCChHHHHHHHHHhhcCCCCCCCceE
Q 015844 322 RLLFPPFQK--YITKGYVSEDEAGKRLAQVVSDPSLTKSGVY 361 (399)
Q Consensus 322 ~~~~~~~~~--~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~ 361 (399)
......... .+..+..+|+|+|+.+++++++...+++|..
T Consensus 202 ~~~~~~~~~~~~p~~~~~~~~~va~~i~~~~~~~~~~i~~~~ 243 (296)
T PRK05872 202 PAFRELRARLPWPLRRTTSVEKCAAAFVDGIERRARRVYAPR 243 (296)
T ss_pred hhHHHHHhhCCCcccCCCCHHHHHHHHHHHHhcCCCEEEchH
Confidence 111111111 2345678999999999999998777666554
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=275.65 Aligned_cols=245 Identities=20% Similarity=0.228 Sum_probs=199.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||++++++|+++|+ +|++++|+.. ..+..+++...+.++.++.||++++++++++++++.+.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999999999995 8999999864 334444444445678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||.. ...++.+.+.+++++++++|+.+++++++.+++.+.+.+ .++||++||..+..
T Consensus 81 ~~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 146 (263)
T PRK08226 81 GRIDILVNNAGVC-RLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK--DGRIVMMSSVTGDM----------- 146 (263)
T ss_pred CCCCEEEECCCcC-CCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEECcHHhcc-----------
Confidence 9999999999986 345666788999999999999999999999999987654 47999999977642
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc---ch
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IP 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~---~~ 319 (399)
.+.+++..|+.+|++++++++.++.++ .+.||+|++|+||+++|++..... .+
T Consensus 147 -----------------------~~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~~ 202 (263)
T PRK08226 147 -----------------------VADPGETAYALTKAAIVGLTKSLAVEY-AQSGIRVNAICPGYVRTPMAESIARQSNP 202 (263)
T ss_pred -----------------------cCCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccCHHHHhhhhhccC
Confidence 123456789999999999999999998 566999999999999998543210 00
Q ss_pred --hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 --LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 --~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg 252 (263)
T PRK08226 203 EDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252 (263)
T ss_pred CCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCC
Confidence 001111112233556788999999999999999888999999999985
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=273.22 Aligned_cols=244 Identities=17% Similarity=0.137 Sum_probs=202.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|++|||||++|||.++|+.|+++|+ +|++++|+.+..+...+.+ +.++.++.+|++|+++++++++++.+.
T Consensus 2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 2 MRLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEI---GPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357789999999999999999999999995 9999999988777666554 245888999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||... ..++.+.+.++|++++++|+.+++++++++.+.|.+++. +|+||++||..+..
T Consensus 78 ~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 145 (257)
T PRK07067 78 FGGIDILFNNAALFD-MAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGR-GGKIINMASQAGRR---------- 145 (257)
T ss_pred cCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC-CcEEEEeCCHHhCC----------
Confidence 999999999999863 356667889999999999999999999999999876532 47999999987664
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--h
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--P 319 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--~ 319 (399)
+.++...|++||++++.|++.++.++ .+.||+||+|+||+|+|+++..... .
T Consensus 146 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~~~~~~~~ 199 (257)
T PRK07067 146 -------------------------GEALVSHYCATKAAVISYTQSAALAL-IRHGINVNAIAPGVVDTPMWDQVDALFA 199 (257)
T ss_pred -------------------------CCCCCchhhhhHHHHHHHHHHHHHHh-cccCeEEEEEeeCcccchhhhhhhhhhh
Confidence 33567789999999999999999998 5679999999999999985432110 0
Q ss_pred ------hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 ------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ------~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 253 (257)
T PRK07067 200 RYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGG 253 (257)
T ss_pred hccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecCC
Confidence 000111112234567788999999999999999888899999999984
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=268.71 Aligned_cols=222 Identities=16% Similarity=0.175 Sum_probs=187.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++||||++|||+++|+.|+++|+ +|++++|+.+++++..+++...+.++..+.||++|+++++++++++.+++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 89999999988888877776666778889999999999999999999998
Q ss_pred C-CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 163 R-PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g-~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+ ++|++|||||......++.+.+.++|.+.+++|+.+++.+++.++|+|.+++. +|+||++||..+.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~----------- 148 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNK-KGVIVNVISHDDH----------- 148 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CceEEEEecCCCC-----------
Confidence 8 99999999987545557778899999999999999999999999999987532 4799999996543
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+++..|++||+|+.+|++.++.|+ .++||+||+|+||+++|+... .+.
T Consensus 149 ---------------------------~~~~~Y~asKaal~~~~~~la~el-~~~~Irvn~v~PG~i~t~~~~---~~~- 196 (227)
T PRK08862 149 ---------------------------QDLTGVESSNALVSGFTHSWAKEL-TPFNIRVGGVVPSIFSANGEL---DAV- 196 (227)
T ss_pred ---------------------------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcCcCCCcc---CHH-
Confidence 345679999999999999999999 667999999999999997221 111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
. +.. + .||++.++.||++ ..+++|.-+.
T Consensus 197 ~-----~~~-~------~~~~~~~~~~l~~--~~~~tg~~~~ 224 (227)
T PRK08862 197 H-----WAE-I------QDELIRNTEYIVA--NEYFSGRVVE 224 (227)
T ss_pred H-----HHH-H------HHHHHhheeEEEe--cccccceEEe
Confidence 0 000 0 1899999999997 4478998764
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=281.68 Aligned_cols=229 Identities=23% Similarity=0.238 Sum_probs=192.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 357889999999999999999999999995 8999999999888888888767778889999999999999999999998
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|++|||||+. ...++.+.+.++|++++++|+.|++++++.++|+|++++ .|+||++||..+..
T Consensus 82 ~g~iD~lVnnAG~~-~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~--~g~iV~isS~~~~~---------- 148 (330)
T PRK06139 82 GGRIDVWVNNVGVG-AVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG--HGIFINMISLGGFA---------- 148 (330)
T ss_pred cCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhcC----------
Confidence 89999999999986 445677889999999999999999999999999998865 47999999988764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+.+..|++||+++.+|+++|+.|+....||+|++|+||+|+|+++........
T Consensus 149 -------------------------~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~~~ 203 (330)
T PRK06139 149 -------------------------AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYTG 203 (330)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccccc
Confidence 3456789999999999999999999843359999999999999986532111000
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.. ..+.....+||++|+.+++++..+..
T Consensus 204 ~~------~~~~~~~~~pe~vA~~il~~~~~~~~ 231 (330)
T PRK06139 204 RR------LTPPPPVYDPRRVAKAVVRLADRPRA 231 (330)
T ss_pred cc------ccCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 00 01122357999999999999876543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=273.95 Aligned_cols=245 Identities=19% Similarity=0.177 Sum_probs=203.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++.+++++.+.+
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 57789999999999999999999999995 99999999888777777776556778999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||......++.+.+.++|++++++|+.+++.+++++.+.|.+.. ++||++||..+..
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~ii~~sS~~~~~----------- 146 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG---GSIVMINSMVLRH----------- 146 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC---CEEEEEechhhcc-----------
Confidence 99999999999864445666788999999999999999999999999987653 6999999987653
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc----
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 318 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~---- 318 (399)
+.++...|+++|++++.+++.++.++ .+.||++++|+||+|.|++......
T Consensus 147 ------------------------~~~~~~~Y~~sK~a~~~l~~~~a~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~~~~ 201 (258)
T PRK07890 147 ------------------------SQPKYGAYKMAKGALLAASQSLATEL-GPQGIRVNSVAPGYIWGDPLKGYFRHQAG 201 (258)
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeCCccCcHHHHHHhhhccc
Confidence 34567789999999999999999998 5679999999999999985432110
Q ss_pred ----hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 ----PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ----~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+............+.+++.+|+|+++++++++++...+++|+.+.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg 254 (258)
T PRK07890 202 KYGVTVEQIYAETAANSDLKRLPTDDEVASAVLFLASDLARAITGQTLDVNCG 254 (258)
T ss_pred ccCCCHHHHHHHHhhcCCccccCCHHHHHHHHHHHcCHhhhCccCcEEEeCCc
Confidence 0001111112233456678999999999999998777899999988874
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=272.51 Aligned_cols=239 Identities=17% Similarity=0.188 Sum_probs=190.4
Q ss_pred EEEEEcCCChHHHHHHHHHHH----cCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 88 SVIITGASSGLGLATAKALAE----TGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~----~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++|||||++|||+++|++|++ .|+ +|++++|+.+.++++.++++. .+.++.++.+|++|.++++++++++.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 689999999999999999997 795 999999998888888777754 3457889999999999999999999887
Q ss_pred CCCc----cEEEecCcccCCCC-CCCCC-ChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 162 GRPL----DVLVCNAAVYLPTA-KEPTF-TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 162 ~g~i----d~lv~nAg~~~~~~-~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
++++ |+||||||+..... ...+. +.++|+++|++|+.|++++++.++|.|.++....++||++||..+..
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 6643 69999999853322 22223 46899999999999999999999999986532237999999988763
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|++||+|++.|++.|+.|+ .++||+||+|+||+|+|++...
T Consensus 157 -------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~v~PG~v~T~~~~~ 204 (256)
T TIGR01500 157 -------------------------------PFKGWALYCAGKAARDMLFQVLALEE-KNPNVRVLNYAPGVLDTDMQQQ 204 (256)
T ss_pred -------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCCcccchHHHH
Confidence 34667899999999999999999999 5679999999999999985432
Q ss_pred ccch--hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 316 EHIP--LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 316 ~~~~--~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
.... ............+.+++.+|+|+|+.++++++. ..+++|+++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~~~-~~~~~G~~~~~ 254 (256)
T TIGR01500 205 VREESVDPDMRKGLQELKAKGKLVDPKVSAQKLLSLLEK-DKFKSGAHVDY 254 (256)
T ss_pred HHHhcCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCcCCcceeec
Confidence 1100 001111122345677889999999999999974 45799999875
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=274.79 Aligned_cols=244 Identities=22% Similarity=0.205 Sum_probs=201.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..++++|++|||||++|||.+++++|+++|+ +|++++|+.. ..+...+.+...+.++.++.||++|.++++++++++.
T Consensus 41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4578899999999999999999999999995 8999998753 3445555555556678899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||.......+.+.+.++|.+++++|+.+++++++++.+.|.+ .++||++||..+..
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~----~g~iV~isS~~~~~-------- 187 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ----GSAIINTGSITGYE-------- 187 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh----CCeEEEEecccccC--------
Confidence 999999999999998644456677889999999999999999999999999864 36999999988764
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||+|++.++++++.++ .+.||+|++|+||.|+|++......+
T Consensus 188 ---------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~gIrv~~i~pG~v~T~~~~~~~~~ 239 (290)
T PRK06701 188 ---------------------------GNETLIDYSATKGAIHAFTRSLAQSL-VQKGIRVNAVAPGPIWTPLIPSDFDE 239 (290)
T ss_pred ---------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCCCCcccccccCH
Confidence 22455689999999999999999998 56799999999999999854332111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.+++++++...+++|..+.+||.
T Consensus 240 --~~~~~~~~~~~~~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idgg 285 (290)
T PRK06701 240 --EKVSQFGSNTPMQRPGQPEELAPAYVFLASPDSSYITGQMLHVNGG 285 (290)
T ss_pred --HHHHHHHhcCCcCCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 1111122234556788999999999999999888899999999884
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=270.44 Aligned_cols=241 Identities=17% Similarity=0.163 Sum_probs=194.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++.. |+.+..+.....+ +.++.++++|++|+++++++++++.+.
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEALADEL---GDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 777754 4555555554443 356888999999999999999999888
Q ss_pred CCC-ccEEEecCcccCC-----CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 162 GRP-LDVLVCNAAVYLP-----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 162 ~g~-id~lv~nAg~~~~-----~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
+++ +|++|||||+... ..++.+.+.++|++++++|+.+++++++.+++.|.+.+ .|+||++||..+..
T Consensus 78 ~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~---- 151 (253)
T PRK08642 78 FGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQG--FGRIINIGTNLFQN---- 151 (253)
T ss_pred hCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC--CeEEEEECCccccC----
Confidence 887 9999999997421 23466788999999999999999999999999997654 47999999975432
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+..+...|++||++++.|++.+++++ .+.||+||+|+||+++|+....
T Consensus 152 -------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~i~pG~v~t~~~~~ 199 (253)
T PRK08642 152 -------------------------------PVVPYHDYTTAKAALLGLTRNLAAEL-GPYGITVNMVSGGLLRTTDASA 199 (253)
T ss_pred -------------------------------CCCCccchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeecccCCchhhc
Confidence 23455689999999999999999998 5679999999999999974432
Q ss_pred ccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...+ ..........+.+++.+|+|+|+.++||+++++.+++|+.+.+||.
T Consensus 200 ~~~~--~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 200 ATPD--EVFDLIAATTPLRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred cCCH--HHHHHHHhcCCcCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 2111 1111122344567789999999999999999888999999999984
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=272.64 Aligned_cols=245 Identities=21% Similarity=0.230 Sum_probs=201.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++.+++|++|||||++|||.+++++|+++|+ +|++++|+.+..+...+.+...+.++.++.+|++++++++++++++.+
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999995 899999998777766666655556778899999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|++|||||... ..++.+.+.++|++++++|+.|+++++++++|.|.+. +|+||++||..+..
T Consensus 83 ~~~~iD~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~---~g~iv~iss~~~~~--------- 149 (264)
T PRK07576 83 EFGPIDVLVSGAAGNF-PAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP---GASIIQISAPQAFV--------- 149 (264)
T ss_pred HcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC---CCEEEEECChhhcc---------
Confidence 8999999999999753 3566678899999999999999999999999998754 37999999987753
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc-CCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~-T~~~~~~~~~ 319 (399)
+.++...|+++|++++.|++.++.++ ...||+|++|+||.++ |+++.. ..+
T Consensus 150 --------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~~v~pg~~~~t~~~~~-~~~ 201 (264)
T PRK07576 150 --------------------------PMPMQAHVCAAKAGVDMLTRTLALEW-GPEGIRVNSIVPGPIAGTEGMAR-LAP 201 (264)
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccccCcHHHhh-ccc
Confidence 34567789999999999999999998 5679999999999997 443322 111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++++++++..+++|.++.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~~gg 249 (264)
T PRK07576 202 SPELQAAVAQSVPLKRNGTKQDIANAALFLASDMASYITGVVLPVDGG 249 (264)
T ss_pred CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCccCCEEEECCC
Confidence 111111111223456788999999999999998888899999999985
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=272.35 Aligned_cols=238 Identities=19% Similarity=0.207 Sum_probs=194.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++++.|+++|+ +|++++|+.... ...++.+++||++|+++++++++++.+.+
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD---------LPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh---------cCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 899999985431 12467889999999999999999999999
Q ss_pred CCccEEEecCcccC-CCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||||... ....+.+.+.++|++++++|+.+++.+++.++|+|++++ .|+||++||..+..+
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~~~~~~--------- 144 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG--SGVIIHVTSIQRRLP--------- 144 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEecccccCC---------
Confidence 99999999999753 234566788999999999999999999999999998764 479999999877631
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
...+...|+++|++++.|++.++.++ .+.||+||+|+||+|+|++.........
T Consensus 145 -------------------------~~~~~~~Y~~sK~a~~~l~~~~a~~~-~~~gi~v~~i~Pg~v~t~~~~~~~~~~~ 198 (260)
T PRK06523 145 -------------------------LPESTTAYAAAKAALSTYSKSLSKEV-APKGVRVNTVSPGWIETEAAVALAERLA 198 (260)
T ss_pred -------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcccCccHHHHHHHHH
Confidence 01256789999999999999999998 5679999999999999985422110000
Q ss_pred -------hhhch----hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 -------RLLFP----PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 -------~~~~~----~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..... .....+.++..+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg 255 (260)
T PRK06523 199 EAAGTDYEGAKQIIMDSLGGIPLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGG 255 (260)
T ss_pred hhcCCCHHHHHHHHHHHhccCccCCCCCHHHHHHHHHHHhCcccccccCceEEecCC
Confidence 00000 11224567788999999999999999888999999999985
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=269.91 Aligned_cols=241 Identities=18% Similarity=0.163 Sum_probs=199.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||.++|++|+++|+ +|++++|+.... ....++. +.++.++.+|++++++++++++++.+.
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVA-EVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 899999987543 2233332 345778999999999999999999998
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||.. ...++.+.+.++|++++++|+.|++++++.+.+.|.+.+ .++||++||..+..
T Consensus 87 ~~~~d~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 153 (255)
T PRK06841 87 FGRIDILVNSAGVA-LLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG--GGKIVNLASQAGVV---------- 153 (255)
T ss_pred hCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC--CceEEEEcchhhcc----------
Confidence 99999999999986 335566778899999999999999999999999998765 47999999987764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+....|+++|++++.+++.++.++ .+.||+||+|+||+|+|++.......
T Consensus 154 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~-- 205 (255)
T PRK06841 154 -------------------------ALERHVAYCASKAGVVGMTKVLALEW-GPYGITVNAISPTVVLTELGKKAWAG-- 205 (255)
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCcCcCcccccccch--
Confidence 33566789999999999999999999 56799999999999999854322111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.+++|+++...+++|+.+.+||.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg 251 (255)
T PRK06841 206 EKGERAKKLIPAGRFAYPEEIAAAALFLASDAAAMITGENLVIDGG 251 (255)
T ss_pred hHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 1111222344567789999999999999999989999999999984
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=275.50 Aligned_cols=238 Identities=21% Similarity=0.261 Sum_probs=193.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||++++++|+++|+ +|++++|+....+ ..++.++.+|++|+++++++++++.+.
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQ---------HENYQFVPTDVSSAEEVNHTVAEIIEK 74 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccc---------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999995 9999988764421 236788999999999999999999999
Q ss_pred CCCccEEEecCcccCCC--------CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 162 GRPLDVLVCNAAVYLPT--------AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~--------~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
++++|+||||||+.... .++.+.+.++|++++++|+.+++++++++.++|.+.+ .|+||++||..+..
T Consensus 75 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-- 150 (266)
T PRK06171 75 FGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQH--DGVIVNMSSEAGLE-- 150 (266)
T ss_pred cCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcC--CcEEEEEccccccC--
Confidence 99999999999975321 1223578899999999999999999999999998764 47999999998764
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.++...|+++|++++.|++.++.++ .+.||+||+|+||+++++.+
T Consensus 151 ---------------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~gi~v~~v~pG~~~~t~~ 196 (266)
T PRK06171 151 ---------------------------------GSEGQSCYAATKAALNSFTRSWAKEL-GKHNIRVVGVAPGILEATGL 196 (266)
T ss_pred ---------------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeccccccCCC
Confidence 23566789999999999999999999 66799999999999973323
Q ss_pred ccc-cchh--------hhhh-chhhH--HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 314 FRE-HIPL--------FRLL-FPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 314 ~~~-~~~~--------~~~~-~~~~~--~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... .... .... ..... ..+.+++.+|+|+|+++.||+++.+.+++|+.+.+||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~itG~~i~vdgg 262 (266)
T PRK06171 197 RTPEYEEALAYTRGITVEQLRAGYTKTSTIPLGRSGKLSEVADLVCYLLSDRASYITGVTTNIAGG 262 (266)
T ss_pred cChhhhhhhccccCCCHHHHHhhhcccccccCCCCCCHHHhhhheeeeeccccccceeeEEEecCc
Confidence 221 1000 0111 11111 45678899999999999999999888999999999984
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=275.87 Aligned_cols=241 Identities=18% Similarity=0.129 Sum_probs=195.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++|++|||||++|||+++|++|+++|+ +|++.+++ ....+...+++...+.++.++.+|++|.++++++++.+.+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999996 88888875 4456666777766677899999999999999999999998
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-----CCceEEEEeccccccCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-----PSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-----~~g~iV~vSS~~~~~~~~~ 235 (399)
++++|+||||||+.. ...+.+.+.++|++++++|+.|++++++++.++|++... ..|+||++||.++..
T Consensus 87 -~g~iD~li~nAG~~~-~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 160 (306)
T PRK07792 87 -LGGLDIVVNNAGITR-DRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV---- 160 (306)
T ss_pred -hCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc----
Confidence 999999999999874 345667899999999999999999999999999875311 137999999988764
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|+++|++++.|++.++.++ .++||+||+|+||. .|++...
T Consensus 161 -------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~i~Pg~-~t~~~~~ 207 (306)
T PRK07792 161 -------------------------------GPVGQANYGAAKAGITALTLSAARAL-GRYGVRANAICPRA-RTAMTAD 207 (306)
T ss_pred -------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEECCCC-CCchhhh
Confidence 23466789999999999999999998 66799999999994 7774322
Q ss_pred ccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
....... .. .......+|+++|..++||+++...+++|+++.++|..
T Consensus 208 ~~~~~~~----~~--~~~~~~~~pe~va~~v~~L~s~~~~~~tG~~~~v~gg~ 254 (306)
T PRK07792 208 VFGDAPD----VE--AGGIDPLSPEHVVPLVQFLASPAAAEVNGQVFIVYGPM 254 (306)
T ss_pred hccccch----hh--hhccCCCCHHHHHHHHHHHcCccccCCCCCEEEEcCCe
Confidence 1111000 00 01112458999999999999998888999999998854
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=268.57 Aligned_cols=240 Identities=19% Similarity=0.201 Sum_probs=196.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++|+++||||++|||+++|++|+++|+ +|++++|+..+.++..+.+ +.++.++++|+++.++++++++++.+.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999995 9999999876666554443 356889999999999999999999999
Q ss_pred CCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++++|+||||||+... ..++.+.+.++|++++++|+.+++++++++.|+|.+. .|+||++||..+..
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~g~ii~~sS~~~~~--------- 149 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH---NGAIVNLASTRARQ--------- 149 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CcEEEEEcchhhcC---------
Confidence 9999999999998643 2456678899999999999999999999999998765 37999999988764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.+.+..|+++|++++.+++.++.++ .. +|+|++|+||+++|++.......
T Consensus 150 --------------------------~~~~~~~Y~~sKaa~~~~~~~la~~~-~~-~i~v~~i~Pg~i~t~~~~~~~~~- 200 (255)
T PRK05717 150 --------------------------SEPDTEAYAASKGGLLALTHALAISL-GP-EIRVNAVSPGWIDARDPSQRRAE- 200 (255)
T ss_pred --------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-cC-CCEEEEEecccCcCCccccccch-
Confidence 23456689999999999999999998 44 69999999999999853221111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.++..+|+|+|..+++++++...+++|+.+.+||.
T Consensus 201 -~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 246 (255)
T PRK05717 201 -PLSEADHAQHPAGRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDGG 246 (255)
T ss_pred -HHHHHHhhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCC
Confidence 0000011133456788999999999999998877899999998884
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=268.08 Aligned_cols=243 Identities=16% Similarity=0.152 Sum_probs=200.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
|+++++|||||++|||++++++|+++|+ +|++ ..|+.++.++..++++..+.++.++.+|++|+++++++++++.+.+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999996 6655 6788877777777776667788999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||.. ...++.+.+.++|+.++++|+.+++++++++.+.|.+++ .|+||++||..+..
T Consensus 81 ~~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~----------- 146 (250)
T PRK08063 81 GRLDVFVNNAASG-VLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVG--GGKIISLSSLGSIR----------- 146 (250)
T ss_pred CCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEEcchhhcc-----------
Confidence 9999999999985 345667888999999999999999999999999998765 47999999976653
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|+++++.++ .+.||++++|+||+++|++... ......
T Consensus 147 ------------------------~~~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~t~~~~~-~~~~~~ 200 (250)
T PRK08063 147 ------------------------YLENYTTVGVSKAALEALTRYLAVEL-APKGIAVNAVSGGAVDTDALKH-FPNREE 200 (250)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-hHhCeEEEeEecCcccCchhhh-ccCchH
Confidence 33456789999999999999999998 5679999999999999985422 111111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++++++|+|+.++++++++..+.+|+++.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 245 (250)
T PRK08063 201 LLEDARAKTPAGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGG 245 (250)
T ss_pred HHHHHhcCCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 111111122345678999999999999998877889999999985
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=266.08 Aligned_cols=241 Identities=19% Similarity=0.234 Sum_probs=198.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
|++|++|||||++|||+++|++|+++|+ +|++ .+++....++..+++...+.++..+.||++|.++++++++++.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999996 6666 4555555555556565556678889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||... ..++.+.+.++|++++++|+.+++.+++.+++.|.+.+ .++||++||..+..
T Consensus 80 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 145 (246)
T PRK12938 80 GEIDVLVNNAGITR-DVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQK----------- 145 (246)
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEEechhccC-----------
Confidence 99999999999863 34666789999999999999999999999999998764 47999999987663
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+++|++++.+++.++.++ ...||++++|+||+++|++... ..+ .
T Consensus 146 ------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~~~t~~~~~-~~~--~ 197 (246)
T PRK12938 146 ------------------------GQFGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKA-IRP--D 197 (246)
T ss_pred ------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEecccCCchhhh-cCh--H
Confidence 33567789999999999999999998 5679999999999999985432 111 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+..++.+|+++++.+.||++++..+++|+.+.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 198 VLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred HHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 111112233456678999999999999999888899999999884
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=270.33 Aligned_cols=234 Identities=23% Similarity=0.250 Sum_probs=193.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-------HHHHHHHhccCCCcEEEEEecCCCHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQF 154 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 154 (399)
+.+++|++|||||++|||.++|++|+++|+ +|++++|+.+. +++..+++...+.++.++.+|+++++++.++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 457889999999999999999999999995 99999997542 3444555555567889999999999999999
Q ss_pred HHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 155 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
++++.+.++++|+||||||... ..++.+.+.++|++++++|+.++++++++++|.|++++ +|+||++||..+...
T Consensus 81 ~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~~-- 155 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAIN-LTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSE--NPHILTLSPPLNLDP-- 155 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCcC-CCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcC--CCEEEEECCchhccc--
Confidence 9999999999999999999863 35666788999999999999999999999999998764 479999998765420
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCC-cccCCCC
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 313 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG-~v~T~~~ 313 (399)
...++...|++||++++.|++.++.|+ .++||+||+|+|| .++|++.
T Consensus 156 -------------------------------~~~~~~~~Y~~sK~a~~~~~~~la~el-~~~~I~v~~i~Pg~~i~t~~~ 203 (273)
T PRK08278 156 -------------------------------KWFAPHTAYTMAKYGMSLCTLGLAEEF-RDDGIAVNALWPRTTIATAAV 203 (273)
T ss_pred -------------------------------cccCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeCCCccccHHH
Confidence 012567799999999999999999999 5679999999999 6888633
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
.. .... ..+..++.+|+++|+.+++++++...+++|+++.
T Consensus 204 ~~-~~~~---------~~~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~~ 243 (273)
T PRK08278 204 RN-LLGG---------DEAMRRSRTPEIMADAAYEILSRPAREFTGNFLI 243 (273)
T ss_pred Hh-cccc---------cccccccCCHHHHHHHHHHHhcCccccceeEEEe
Confidence 21 1110 1123457899999999999999988889999984
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=266.34 Aligned_cols=245 Identities=21% Similarity=0.261 Sum_probs=204.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++||||++|||+++++.|+++|+ +|++++|+.++++.+...+...+.++.++.+|++++++++++++++.+.+
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 47789999999999999999999999996 89999999888777777665555678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC------CCceEEEEeccccccCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY------PSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~------~~g~iV~vSS~~~~~~~~~~ 236 (399)
+++|++|||||... ...+.+.+.++|+.++++|+.+++++++.+++.|.++.. ..++||++||..+..
T Consensus 85 ~~~d~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----- 158 (258)
T PRK06949 85 GTIDILVNNSGVST-TQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR----- 158 (258)
T ss_pred CCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-----
Confidence 99999999999863 345667788999999999999999999999999876532 137999999987653
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+.+....|+++|++++.+++.++.++ .+.||+|++|+||+|+|++....
T Consensus 159 ------------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pG~v~t~~~~~~ 207 (258)
T PRK06949 159 ------------------------------VLPQIGLYCMSKAAVVHMTRAMALEW-GRHGINVNAICPGYIDTEINHHH 207 (258)
T ss_pred ------------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEeeCCCcCCcchhc
Confidence 33456789999999999999999998 56799999999999999854321
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ..........+.++..+|+|+++.+.||+++.+.+++|+++.+||.
T Consensus 208 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~dgg 256 (258)
T PRK06949 208 WET--EQGQKLVSMLPRKRVGKPEDLDGLLLLLAADESQFINGAIISADDG 256 (258)
T ss_pred cCh--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCCCcEEEeCCC
Confidence 111 1111222333556789999999999999999888999999999984
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=263.70 Aligned_cols=231 Identities=19% Similarity=0.191 Sum_probs=186.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||+++|++|+++|+ +|++++|+.+...+..+ .. .+.++.+|++|.++++++++++.+.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 75 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLR---QA--GAQCIQADFSTNAGIMAFIDELKQHTDGL 75 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHH---Hc--CCEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence 57999999999999999999999995 99999998654332222 22 25788999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||||.... ....+.+.++|++++++|+.+++.+++.++|.|.+.+...|+||++||..+..
T Consensus 76 d~lv~~ag~~~~-~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~-------------- 140 (236)
T PRK06483 76 RAIIHNASDWLA-EKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK-------------- 140 (236)
T ss_pred cEEEECCccccC-CCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc--------------
Confidence 999999998533 33456788999999999999999999999999987542247999999987653
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.+++..|++||++++.|++.++.++ .+ +|+||+|+||+|.|+... .+ ....
T Consensus 141 ---------------------~~~~~~~Y~asKaal~~l~~~~a~e~-~~-~irvn~v~Pg~~~~~~~~---~~--~~~~ 192 (236)
T PRK06483 141 ---------------------GSDKHIAYAASKAALDNMTLSFAAKL-AP-EVKVNSIAPALILFNEGD---DA--AYRQ 192 (236)
T ss_pred ---------------------CCCCCccHHHHHHHHHHHHHHHHHHH-CC-CcEEEEEccCceecCCCC---CH--HHHH
Confidence 33566789999999999999999999 45 699999999999875321 11 1111
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....+.+.++...|+|+|+.+.||++ ..+++|+.+.+||.
T Consensus 193 ~~~~~~~~~~~~~~~~va~~~~~l~~--~~~~~G~~i~vdgg 232 (236)
T PRK06483 193 KALAKSLLKIEPGEEEIIDLVDYLLT--SCYVTGRSLPVDGG 232 (236)
T ss_pred HHhccCccccCCCHHHHHHHHHHHhc--CCCcCCcEEEeCcc
Confidence 22234456778899999999999997 45799999999985
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=265.37 Aligned_cols=241 Identities=19% Similarity=0.143 Sum_probs=202.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|+++||||++|||.+++++|+++|+ +|++++|+....++..+++...+.++.++.+|++|++++.++++++.+.++++|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999996 899999998777777777766667889999999999999999999999999999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||.. ...++.+.+.++|++++++|+.+++++++.+++.|++.+. +++||++||..+..
T Consensus 80 ~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--------------- 142 (254)
T TIGR02415 80 VMVNNAGVA-PITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGH-GGKIINAASIAGHE--------------- 142 (254)
T ss_pred EEEECCCcC-CCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEecchhhcC---------------
Confidence 999999986 4456678899999999999999999999999999987653 37999999988764
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh------
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL------ 320 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~------ 320 (399)
+.+....|+++|++++.|++.++.++ .+.||+|++|+||+++|++... ....
T Consensus 143 --------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~i~t~~~~~-~~~~~~~~~~ 200 (254)
T TIGR02415 143 --------------------GNPILSAYSSTKFAVRGLTQTAAQEL-APKGITVNAYCPGIVKTPMWEE-IDEETSEIAG 200 (254)
T ss_pred --------------------CCCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccChhhhh-hhhhhhhccc
Confidence 33567789999999999999999998 5669999999999999985322 1110
Q ss_pred ---hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 ---FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ---~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|+++.+.||+++....++|+++.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 250 (254)
T TIGR02415 201 KPIGEGFEEFSSEIALGRPSEPEDVAGLVSFLASEDSDYITGQSILVDGG 250 (254)
T ss_pred CchHHHHHHHHhhCCCCCCCCHHHHHHHHHhhcccccCCccCcEEEecCC
Confidence 00111122334557789999999999999999888899999999984
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=264.00 Aligned_cols=241 Identities=22% Similarity=0.235 Sum_probs=199.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|+++||||++|||+++|++|+++|+ +|+++.|+ ....++..+++...+.++.++.+|+++.++++++++++.+.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999996 77777665 34455566666555678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|++|||||+.. ..++.+.+.++|++++++|+.+++++++++++.|.. .++||++||..+..
T Consensus 81 ~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~~~iv~~ss~~~~~---------- 145 (245)
T PRK12937 81 FGRIDVLVNNAGVMP-LGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ----GGRIINLSTSVIAL---------- 145 (245)
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc----CcEEEEEeeccccC----------
Confidence 999999999999863 356667789999999999999999999999999864 36999999977653
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+++..|+.+|++++.+++.++.++ ...||++++|+||+++|++......+
T Consensus 146 -------------------------~~~~~~~Y~~sK~a~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~-- 197 (245)
T PRK12937 146 -------------------------PLPGYGPYAASKAAVEGLVHVLANEL-RGRGITVNAVAPGPVATELFFNGKSA-- 197 (245)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCccCchhcccCCH--
Confidence 34567789999999999999999998 56799999999999999864332211
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.++..+|+|+++.++|+++++..+++|.++..||.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 198 EQIDQLAGLAPLERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccccEEEeCCC
Confidence 1122222344556778999999999999999888999999998873
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=267.54 Aligned_cols=242 Identities=20% Similarity=0.202 Sum_probs=196.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|++|++|||||++|||+++|++|+++|+ +|++++|+.... +..+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 68899999999999999999999999996 888899987665 5556665556778999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||... ...+.. +.++|++.+++|+.+++++++.+.|.+++. .|+||++||..+..
T Consensus 82 ~~id~vi~~ag~~~-~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~iv~~ss~~~~~----------- 145 (258)
T PRK08628 82 GRIDGLVNNAGVND-GVGLEA-GREAFVASLERNLIHYYVMAHYCLPHLKAS---RGAIVNISSKTALT----------- 145 (258)
T ss_pred CCCCEEEECCcccC-CCcccC-CHHHHHHHHhhhhHHHHHHHHHHHHHhhcc---CcEEEEECCHHhcc-----------
Confidence 99999999999753 333434 348999999999999999999999988764 37999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--chh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--~~~ 320 (399)
+.++...|++||++++.+++.++.++ .+.||+|++|+||.|+|++..... .+.
T Consensus 146 ------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~pg~v~t~~~~~~~~~~~~ 200 (258)
T PRK08628 146 ------------------------GQGGTSGYAAAKGAQLALTREWAVAL-AKDGVRVNAVIPAEVMTPLYENWIATFDD 200 (258)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCHHHHHHhhhccC
Confidence 23466789999999999999999998 567999999999999998532210 000
Q ss_pred h-hhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 F-RLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~-~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..........+. .++.+|+|+|+.+++++++.+.+.+|+++.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 249 (258)
T PRK08628 201 PEAKLAAITAKIPLGHRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGG 249 (258)
T ss_pred HHHHHHHHHhcCCccccCCCHHHHHHHHHHHhChhhccccCceEEecCC
Confidence 0 111111122232 3678999999999999999888899999999885
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=266.19 Aligned_cols=244 Identities=18% Similarity=0.136 Sum_probs=201.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||++|||.+++++|+++|+ +|++++|+.+..+++.+.+...+.++.++.+|+++++++.++++++.+.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 99999999887777777765556678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||... ...+.+.+.++|++++++|+.+++.+++++.+.|.+... .|+||++||..+..
T Consensus 86 ~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~sS~~~~~----------- 152 (263)
T PRK07814 86 GRLDIVVNNVGGTM-PNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSG-GGSVINISSTMGRL----------- 152 (263)
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcC-CeEEEEEccccccC-----------
Confidence 99999999999853 345667889999999999999999999999999977421 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.+++.++.++ .+ +|++++|+||++.|+++.. ......
T Consensus 153 ------------------------~~~~~~~Y~~sK~a~~~~~~~~~~e~-~~-~i~v~~i~Pg~v~t~~~~~-~~~~~~ 205 (263)
T PRK07814 153 ------------------------AGRGFAAYGTAKAALAHYTRLAALDL-CP-RIRVNAIAPGSILTSALEV-VAANDE 205 (263)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-CC-CceEEEEEeCCCcCchhhh-ccCCHH
Confidence 23567789999999999999999998 44 7999999999999985432 111111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+..+..+|+|+|+.++|++++...+.+|+++.+|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 206 LRAPMEKATPLRRLGDPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 111112223445677999999999999998878899999999885
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=263.79 Aligned_cols=243 Identities=23% Similarity=0.201 Sum_probs=196.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|++|||||++|||.++++.|+++|+ +|+++ .|+.+..+.....+...+.++.++.||+++.++++++++++.+.+++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW-SVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR 80 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 36899999999999999999999996 77665 56666666666666555668999999999999999999999988899
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC-CCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~-~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+|+||||||+......+.+.+.++|+.++++|+.+++++++.+++.+...+ .+.++||++||..+..+.
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~---------- 150 (248)
T PRK06947 81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS---------- 150 (248)
T ss_pred CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC----------
Confidence 999999999865445566788999999999999999999999999886542 124689999998876421
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
...+..|++||++++.|++.++.++ .+.||+|++|+||+++|++......+..
T Consensus 151 ------------------------~~~~~~Y~~sK~~~~~~~~~la~~~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~-- 203 (248)
T PRK06947 151 ------------------------PNEYVDYAGSKGAVDTLTLGLAKEL-GPHGVRVNAVRPGLIETEIHASGGQPGR-- 203 (248)
T ss_pred ------------------------CCCCcccHhhHHHHHHHHHHHHHHh-hhhCcEEEEEeccCcccccccccCCHHH--
Confidence 1123579999999999999999998 5679999999999999985432211111
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
........+..+..+||++|+.++++++++..+++|+++.+||
T Consensus 204 ~~~~~~~~~~~~~~~~e~va~~~~~l~~~~~~~~~G~~~~~~g 246 (248)
T PRK06947 204 AARLGAQTPLGRAGEADEVAETIVWLLSDAASYVTGALLDVGG 246 (248)
T ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceEeeCC
Confidence 1111122344567899999999999999998899999999987
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=263.78 Aligned_cols=245 Identities=18% Similarity=0.126 Sum_probs=203.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++++++|||||+||||.+++++|+++|+ +|++++|+.+..+.....+.. +.++.++.||++|.++++++++++.+.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 899999998877776666654 5678899999999999999999998889
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||......++.+.+.++|++.+++|+.+++.+++.+++.|.+++ .++||++||..+..
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~----------- 146 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG--GGAIVNVASTAGLR----------- 146 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcC-----------
Confidence 99999999999865555666789999999999999999999999999998764 47999999987763
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-hh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~ 321 (399)
+.++...|+.+|++++.+++.++.++ ++.||++++|+||+++|++....... ..
T Consensus 147 ------------------------~~~~~~~y~~sk~~~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~ 201 (251)
T PRK07231 147 ------------------------PRPGLGWYNASKGAVITLTKALAAEL-GPDKIRVNAVAPVVVETGLLEAFMGEPTP 201 (251)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEECccCCCcchhhhcccCh
Confidence 34567789999999999999999998 56699999999999999854321110 00
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.+++++++...+++|+++.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 247 (251)
T PRK07231 202 ENRAKFLATIPLGRLGTPEDIANAALFLASDEASWITGVTLVVDGG 247 (251)
T ss_pred HHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECCC
Confidence 1111122233456678999999999999998888899999999884
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=265.14 Aligned_cols=239 Identities=19% Similarity=0.162 Sum_probs=195.7
Q ss_pred ccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecC-----------hHHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRD-----------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 83 ~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
.+++|++|||||++ |||.++|++|+++|+ +|++++|+ ........+.+...+.+++++.+|+++.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 46789999999994 999999999999995 89999887 22222244444444667899999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
++..+++++.+.++++|+||||||+. ...++.+.+.+++++.+++|+.+++++++++.+.|.+.. .++||++||..+
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~ss~~~ 157 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNAAYS-THTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKA--GGRIINLTSGQS 157 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC--CeEEEEECCccc
Confidence 99999999999999999999999986 345666788999999999999999999999999987654 479999999876
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
.. +.++...|+++|++++.+++.++.++ ...||+|++|+||.++
T Consensus 158 ~~-----------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~~~ 201 (256)
T PRK12748 158 LG-----------------------------------PMPDELAYAATKGAIEAFTKSLAPEL-AEKGITVNAVNPGPTD 201 (256)
T ss_pred cC-----------------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCccc
Confidence 53 34566789999999999999999998 5679999999999999
Q ss_pred CCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 310 TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 310 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|+++...... ......+..++.+|+|+|+.+.+++++....++|+++.+|+.
T Consensus 202 t~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 202 TGWITEELKH------HLVPKFPQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred CCCCChhHHH------hhhccCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 9854321110 111223345678999999999999999888899999999874
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=262.98 Aligned_cols=240 Identities=21% Similarity=0.259 Sum_probs=197.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||.+++++|+++|+ +|++++|+.+..++..+++ +.++.+++||++|.+++..+++.+.+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 9999999977666655554 4578889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||... ..++.+.+.++|++++++|+.+++++++++.|.|.+. +++|+++|..+..
T Consensus 79 ~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~i~~~S~~~~~----------- 142 (249)
T PRK06500 79 GRLDAVFINAGVAK-FAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANP----ASIVLNGSINAHI----------- 142 (249)
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC----CEEEEEechHhcc-----------
Confidence 99999999999863 3456678899999999999999999999999998642 5899999987764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch--h
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--L 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--~ 320 (399)
+.+....|+.+|++++.+++.++.++ .+.||++++|+||.++|++....... .
T Consensus 143 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~~~t~~~~~~~~~~~~ 197 (249)
T PRK06500 143 ------------------------GMPNSSVYAASKAALLSLAKTLSGEL-LPRGIRVNAVSPGPVQTPLYGKLGLPEAT 197 (249)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCCCHHHHhhccCccc
Confidence 23456789999999999999999998 56799999999999999854321111 0
Q ss_pred hhhh-chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLL-FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~-~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.... .......+.+++.+|+|+|+.+++++++...+++|..+.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 245 (249)
T PRK06500 198 LDAVAAQIQALVPLGRFGTPEEIAKAVLYLASDESAFIVGSEIIVDGG 245 (249)
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence 0111 1112223455678999999999999998888999999999985
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=244.19 Aligned_cols=234 Identities=23% Similarity=0.296 Sum_probs=193.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc--C
Q 015844 86 KGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 162 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~--~ 162 (399)
-|+|+||||++|||+.++++|.+. |..+++.++|+.+++.+..+.......++++++.|+++.+++.++++++.+- .
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~ 82 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS 82 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence 467999999999999999999874 6656677788887753333333334678999999999999999999999886 4
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC---------CCceEEEEeccccccCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---------PSKRLIIVGSITGNTNT 233 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~---------~~g~iV~vSS~~~~~~~ 233 (399)
..+|+||||||+........+.+.+.|.+.+++|..|+++++|+++|++++... ..+.|||+||..+.++.
T Consensus 83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~~ 162 (249)
T KOG1611|consen 83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGG 162 (249)
T ss_pred CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccCC
Confidence 679999999999866556666678899999999999999999999999987542 13479999998876532
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
. ...++.+|.+||+|+++|+|+++.++ ++.+|-|.++|||+|.|+|-
T Consensus 163 ~--------------------------------~~~~~~AYrmSKaAlN~f~ksls~dL-~~~~ilv~sihPGwV~TDMg 209 (249)
T KOG1611|consen 163 F--------------------------------RPGGLSAYRMSKAALNMFAKSLSVDL-KDDHILVVSIHPGWVQTDMG 209 (249)
T ss_pred C--------------------------------CCcchhhhHhhHHHHHHHHHHhhhhh-cCCcEEEEEecCCeEEcCCC
Confidence 1 23578899999999999999999999 67899999999999999855
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 370 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~ 370 (399)
.. ....+|||.+..++..+..-....+|.|+..|+.+.+
T Consensus 210 g~------------------~a~ltveeSts~l~~~i~kL~~~hnG~ffn~dlt~ip 248 (249)
T KOG1611|consen 210 GK------------------KAALTVEESTSKLLASINKLKNEHNGGFFNRDGTPIP 248 (249)
T ss_pred CC------------------CcccchhhhHHHHHHHHHhcCcccCcceEccCCCcCC
Confidence 42 2356999999999999998888899999999996543
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=266.95 Aligned_cols=232 Identities=17% Similarity=0.165 Sum_probs=189.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|.++++++++++.+.+
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999996 89999999888887777776656678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ....+.+.+.++|++++++|+.|++++++.++|.|.+++. +|+||++||.++..
T Consensus 82 g~id~li~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~-~g~iv~isS~~~~~----------- 148 (275)
T PRK05876 82 GHVDVVFSNAGIV-VGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGT-GGHVVFTASFAGLV----------- 148 (275)
T ss_pred CCCCEEEECCCcC-CCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCChhhcc-----------
Confidence 9999999999986 3456778899999999999999999999999999987642 47999999998774
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh-
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF- 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~- 321 (399)
+.++...|++||+++.+|++.|+.|+ ...||+|++|+||.++|++..+......
T Consensus 149 ------------------------~~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 203 (275)
T PRK05876 149 ------------------------PNAGLGAYGVAKYGVVGLAETLAREV-TADGIGVSVLCPMVVETNLVANSERIRGA 203 (275)
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCccccccccchhhhcCc
Confidence 34567789999999999999999998 5679999999999999985432110000
Q ss_pred h-hhc---hhhHHHH-hcCCCChHHHHHHHHHhhcCC
Q 015844 322 R-LLF---PPFQKYI-TKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 322 ~-~~~---~~~~~~~-~~~~~~pee~a~~v~~l~~~~ 353 (399)
. ... ......+ .....+|+++|+.++..+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~ 240 (275)
T PRK05876 204 ACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILAN 240 (275)
T ss_pred cccccccccccccccccccCCCHHHHHHHHHHHHHcC
Confidence 0 000 0001111 123579999999999887543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=290.16 Aligned_cols=244 Identities=20% Similarity=0.225 Sum_probs=201.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
..++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|+++++++++++.+.+
T Consensus 2 ~~~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (520)
T PRK06484 2 KAQSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREF 77 (520)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999995 9999999988777766655 4567889999999999999999999999
Q ss_pred CCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||||+..+ ..++.+.+.++|++++++|+.++++++++++|+|++++. +++||++||.++..
T Consensus 78 g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~~iv~isS~~~~~---------- 146 (520)
T PRK06484 78 GRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGH-GAAIVNVASGAGLV---------- 146 (520)
T ss_pred CCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCeEEEECCcccCC----------
Confidence 999999999998422 245667899999999999999999999999999977542 34999999988874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+++|+++..|++.++.|+ .+.||+|++|+||+|+|++... .....
T Consensus 147 -------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~-~~~~~ 199 (520)
T PRK06484 147 -------------------------ALPKRTAYSASKAAVISLTRSLACEW-AAKGIRVNAVLPGYVRTQMVAE-LERAG 199 (520)
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCcCchhhhh-hcccc
Confidence 33567789999999999999999999 5679999999999999985432 11100
Q ss_pred h-hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 R-LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 ~-~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
. .........+.+++.+|+++|+.++|++++...+++|+.+.+||..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~va~~v~~l~~~~~~~~~G~~~~~~gg~ 247 (520)
T PRK06484 200 KLDPSAVRSRIPLGRLGRPEEIAEAVFFLASDQASYITGSTLVVDGGW 247 (520)
T ss_pred hhhhHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCceEEecCCe
Confidence 0 0111122334556789999999999999998888999999888743
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=262.27 Aligned_cols=243 Identities=20% Similarity=0.168 Sum_probs=197.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-C-CcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-K-ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+|++|||||+++||.+++++|+++|+ +|++++|+....+...+.+... + .++.++.||+++.+++.++++++.+.++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 67999999999999999999999995 9999999987776666655432 2 4688999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|++|||||... ...+.+.+.++|++.+++|+.+++++++++++.|.+++. .++||++||..+..
T Consensus 81 ~id~vv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~~~iv~~ss~~~~~------------ 146 (259)
T PRK12384 81 RVDLLVYNAGIAK-AAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGI-QGRIIQINSKSGKV------------ 146 (259)
T ss_pred CCCEEEECCCcCC-CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC-CcEEEEecCccccc------------
Confidence 9999999999864 356667899999999999999999999999999987541 36999999987654
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc-cCCCCccccchhh-
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLF- 321 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v-~T~~~~~~~~~~~- 321 (399)
+.+....|++||+|++.+++.++.++ ++.||+|++|+||.+ .|++. ....+..
T Consensus 147 -----------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~pg~~~~~~~~-~~~~~~~~ 201 (259)
T PRK12384 147 -----------------------GSKHNSGYSAAKFGGVGLTQSLALDL-AEYGITVHSLMLGNLLKSPMF-QSLLPQYA 201 (259)
T ss_pred -----------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCcccchhh-hhhhHHHH
Confidence 22345689999999999999999998 567999999999975 55533 2221110
Q ss_pred --------hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 --------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 --------~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..........+.+++..|+|+++.+++|+++...+++|+.+.+|+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~ 256 (259)
T PRK12384 202 KKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQ 256 (259)
T ss_pred HhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCCE
Confidence 11111223445678899999999999999988778999999988853
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=275.46 Aligned_cols=226 Identities=20% Similarity=0.190 Sum_probs=191.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|.++++++++.+.+.+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 57789999999999999999999999995 99999999988888888877667789999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||+. ...++.+.+.++|++++++|+.|++++++.++++|++++ .|+||++||..+..
T Consensus 84 g~iD~lInnAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~--~g~iV~isS~~~~~----------- 149 (334)
T PRK07109 84 GPIDTWVNNAMVT-VFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD--RGAIIQVGSALAYR----------- 149 (334)
T ss_pred CCCCEEEECCCcC-CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEeCChhhcc-----------
Confidence 9999999999986 345677889999999999999999999999999998864 47999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-CCceEEEEeeCCcccCCCCccccchhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+.+..|++||+++..|+++++.|+.. ..+|+|++|+||.|+|+++... ..
T Consensus 150 ------------------------~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~-~~-- 202 (334)
T PRK07109 150 ------------------------SIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWA-RS-- 202 (334)
T ss_pred ------------------------CCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhh-hh--
Confidence 3356778999999999999999999842 2589999999999999854211 00
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.+.. ...+..++.+|+++|+.++++++++
T Consensus 203 -~~~~--~~~~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 203 -RLPV--EPQPVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred -hccc--cccCCCCCCCHHHHHHHHHHHHhCC
Confidence 0000 0112345679999999999999876
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=259.82 Aligned_cols=243 Identities=23% Similarity=0.219 Sum_probs=203.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||.++++.|+++|+ +|++++|+.++.+...+.++..+.++.++.+|++|+++++++++++.+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 89999999888777777776556688999999999999999999999988
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||+|.... ..+.+.+.++|++++++|+.+++++++.+.+.+.+++ .|+||++||..+..
T Consensus 83 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 148 (250)
T PRK12939 83 GGLDGLVNNAGITNS-KSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSG--RGRIVNLASDTALW----------- 148 (250)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEECchhhcc-----------
Confidence 999999999998643 4566778899999999999999999999999988754 47999999987763
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+....|+++|++++.+++.++.++ ...+|++++|+||.++|++... ... ..
T Consensus 149 ------------------------~~~~~~~y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~-~~~-~~ 201 (250)
T PRK12939 149 ------------------------GAPKLGAYVASKGAVIGMTRSLAREL-GGRGITVNAIAPGLTATEATAY-VPA-DE 201 (250)
T ss_pred ------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhhCEEEEEEEECCCCCccccc-cCC-hH
Confidence 23456689999999999999999998 5669999999999999985432 111 01
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+..++.+|+|+|+.+++++++...+++|+++.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 246 (250)
T PRK12939 202 RHAYYLKGRALERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNGG 246 (250)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 111112233456678999999999999998877899999999984
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=260.44 Aligned_cols=235 Identities=20% Similarity=0.208 Sum_probs=194.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++||||++|||.++|++|+++|+ +|++++|. .+..+...+++...+.++.++.+|++|.++++++++++.+.++++|+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-EICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 58999999999999999999996 78887764 45566666666655678999999999999999999999988999999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHH-HHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL-DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~-~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||||+.. ...+.+.+.++|+.++++|+.+++++++.++ |.+.+.+ .|+||++||.++..
T Consensus 80 li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~vsS~~~~~--------------- 141 (239)
T TIGR01831 80 VVLNAGITR-DAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ--GGRIITLASVSGVM--------------- 141 (239)
T ss_pred EEECCCCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC--CeEEEEEcchhhcc---------------
Confidence 999999864 3456677899999999999999999999875 4444333 47999999988774
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
+.++...|+++|++++.+++.++.++ .+.||+|++|+||+++|++... ..+. ...
T Consensus 142 --------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~---~~~ 196 (239)
T TIGR01831 142 --------------------GNRGQVNYSAAKAGLIGATKALAVEL-AKRKITVNCIAPGLIDTEMLAE-VEHD---LDE 196 (239)
T ss_pred --------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEEccCccccchh-hhHH---HHH
Confidence 33566789999999999999999998 5669999999999999985532 2211 112
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.....+.+++.+|+|+|+.++||+++.+.+++|..+.+||.
T Consensus 197 ~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 237 (239)
T TIGR01831 197 ALKTVPMNRMGQPAEVASLAGFLMSDGASYVTRQVISVNGG 237 (239)
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 33445667889999999999999999989999999999884
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=261.81 Aligned_cols=242 Identities=20% Similarity=0.214 Sum_probs=196.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||.+++++|+++|+ +|++++|+....+...+.+. ..+++||++++++++++++++.+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999995 99999999877666555542 2578999999999999999999888
Q ss_pred CCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|++|||||...+ ..++.+.+.++|++++++|+.+++++++.++|.|++.+ .|+||++||..+..+.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~g~iv~~sS~~~~~g~-------- 147 (255)
T PRK06057 78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG--KGSIINTASFVAVMGS-------- 147 (255)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC--CcEEEEEcchhhccCC--------
Confidence 999999999998532 23455678899999999999999999999999998754 4799999998765421
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.++...|+.+|++++.+++.++.++ .+.||+|++|+||.++|++.........
T Consensus 148 --------------------------~~~~~~Y~~sKaal~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~~~~~~~~~ 200 (255)
T PRK06057 148 --------------------------ATSQISYTASKGGVLAMSRELGVQF-ARQGIRVNALCPGPVNTPLLQELFAKDP 200 (255)
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCCcCCchhhhhccCCH
Confidence 1245679999999999999999998 5569999999999999986432211001
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+++.+.+++++...+.+|..+.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 201 ERAARRLVHVPMGRFAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 1111222234456788999999999999999888999999999884
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=259.12 Aligned_cols=243 Identities=21% Similarity=0.209 Sum_probs=195.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|++|||||++|||.+++++|+++|+ +|++.. |+.+..+...+.+...+.++.++.||++|.++++++++++.+.+++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGY-AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 57999999999999999999999996 777765 5555555565656555567889999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+|+||||||.......+.+.+.++|++++++|+.+++++++.+++.|.++.. ..|+||++||.++..+.
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 150 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS---------- 150 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC----------
Confidence 9999999998654445667889999999999999999999999999876421 13689999998876421
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCh-hhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
++ ...|+++|++++.|++.++.++ .++||+|++|+||.+.|++......+ .
T Consensus 151 -------------------------~~~~~~Y~~sKaa~~~~~~~la~~~-~~~~i~v~~i~pg~v~~~~~~~~~~~--~ 202 (248)
T PRK06123 151 -------------------------PGEYIDYAASKGAIDTMTIGLAKEV-AAEGIRVNAVRPGVIYTEIHASGGEP--G 202 (248)
T ss_pred -------------------------CCCccchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccCchhhccCCH--H
Confidence 22 3469999999999999999998 66799999999999999853322111 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.++..+|+|+++.+++++++...+++|+++.++|.
T Consensus 203 ~~~~~~~~~p~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 203 RVDRVKAGIPMGRGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 111122234556678999999999999998777899999998873
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=259.51 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=179.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCC-cEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++||||++|||+++|++|+ +| .+|++++|+.++++++.++++..+. .+.+++||++|.++++++++++.+.+|++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999 59 4999999999888888888765543 47889999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||||+... ....+.+.+++.+++++|+.+++++++.++|.|.++.. +|+||++||.++..
T Consensus 79 d~lv~nag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~~-------------- 142 (246)
T PRK05599 79 SLAVVAFGILGD-QERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTA-PAAIVAFSSIAGWR-------------- 142 (246)
T ss_pred CEEEEecCcCCC-chhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-CCEEEEEecccccc--------------
Confidence 999999998643 33445677788899999999999999999999976531 47999999998874
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|++||+|+++|++.++.|+ .+.||+||+|+||+|+|++... ..+.
T Consensus 143 ---------------------~~~~~~~Y~asKaa~~~~~~~la~el-~~~~I~v~~v~PG~v~T~~~~~-~~~~----- 194 (246)
T PRK05599 143 ---------------------ARRANYVYGSTKAGLDAFCQGLADSL-HGSHVRLIIARPGFVIGSMTTG-MKPA----- 194 (246)
T ss_pred ---------------------CCcCCcchhhHHHHHHHHHHHHHHHh-cCCCceEEEecCCcccchhhcC-CCCC-----
Confidence 33566789999999999999999999 5679999999999999985422 1110
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
....+|||+|+.+++++....
T Consensus 195 --------~~~~~pe~~a~~~~~~~~~~~ 215 (246)
T PRK05599 195 --------PMSVYPRDVAAAVVSAITSSK 215 (246)
T ss_pred --------CCCCCHHHHHHHHHHHHhcCC
Confidence 113589999999999998753
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=258.46 Aligned_cols=242 Identities=20% Similarity=0.181 Sum_probs=198.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|++|||||+||||.+++++|+++|+ +|++++|+....+...+++...+.++.++.+|++|.++++++++++.+.
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999995 9999999987766666666544556788999999999999999999999
Q ss_pred CCCccEEEecCcccCC--CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++++|+||||||+... ..++.+.+.++|++++++|+.+++++++++++.|.+.+ .|+||++||..++.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~-------- 150 (250)
T PRK07774 81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRG--GGAIVNQSSTAAWL-------- 150 (250)
T ss_pred hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC--CcEEEEEecccccC--------
Confidence 9999999999998632 23455778899999999999999999999999998754 47999999987652
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+...|++||++++.+++.+++++ ...||++++|+||.++|++.... .+
T Consensus 151 ------------------------------~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~-~~ 198 (250)
T PRK07774 151 ------------------------------YSNFYGLAKVGLNGLTQQLAREL-GGMNIRVNAIAPGPIDTEATRTV-TP 198 (250)
T ss_pred ------------------------------CccccHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCcccCcccccc-CC
Confidence 34579999999999999999998 56799999999999999854322 11
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..........+..+..+|+|+|+.+++++.......+|++|.+++.
T Consensus 199 ~-~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g 245 (250)
T PRK07774 199 K-EFVADMVKGIPLSRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGG 245 (250)
T ss_pred H-HHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhhCcCCCEEEECCC
Confidence 1 1111223333344567999999999999988766689999988874
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=259.21 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=202.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||.++|++|+++|+ +|++++|+.++.+...+.+...+.++.++.||++|+++++++++++.+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 9999999988777777666655667889999999999999999999998
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHH-HhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~-l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++++|++|||||... ..+..+.+.+.|++++++|+.+++++++++.++ |.+++ .++||++||..+..+..
T Consensus 87 ~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~--~~~~v~~sS~~~~~~~~------ 157 (259)
T PRK08213 87 FGHVDILVNNAGATW-GAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRG--YGRIINVASVAGLGGNP------ 157 (259)
T ss_pred hCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcC--CeEEEEECChhhccCCC------
Confidence 899999999999853 345556788999999999999999999999998 65543 47999999987764210
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
....+...|+++|++++.+++.++.++ .+.||++++|+||+++|++... ..+.
T Consensus 158 -------------------------~~~~~~~~Y~~sKa~~~~~~~~~a~~~-~~~gi~v~~v~Pg~~~t~~~~~-~~~~ 210 (259)
T PRK08213 158 -------------------------PEVMDTIAYNTSKGAVINFTRALAAEW-GPHGIRVNAIAPGFFPTKMTRG-TLER 210 (259)
T ss_pred -------------------------ccccCcchHHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCcCCCcchhh-hhHH
Confidence 011345789999999999999999998 5679999999999999974322 2221
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+..++.+|+|+|+.+.+++++.+.+++|+.+..||.
T Consensus 211 --~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 211 --LGEDLLAHTPLGRLGDDEDLKGAALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 111223344456678999999999999999988999999999884
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=247.47 Aligned_cols=233 Identities=17% Similarity=0.235 Sum_probs=187.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc--cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++.||.+++|||.||||+++++.|+++|+ .+.++..+.+..+..+ +++ .+..++.+++|||++..++++.++++..
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgi-k~~~i~~~~En~~a~a-kL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~ 79 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGI-KVLVIDDSEENPEAIA-KLQAINPSVSVIFIKCDVTNRGDLEAAFDKILA 79 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCc-hheeehhhhhCHHHHH-HHhccCCCceEEEEEeccccHHHHHHHHHHHHH
Confidence 57899999999999999999999999998 5555544444444333 332 2356899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC-CCCceEEEEeccccccCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~-~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.+|.||++||+||+. +..+|++++++|+.|.++-+..++|+|.+.. .++|-|||+||..|..
T Consensus 80 ~fg~iDIlINgAGi~---------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~-------- 142 (261)
T KOG4169|consen 80 TFGTIDILINGAGIL---------DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD-------- 142 (261)
T ss_pred HhCceEEEEcccccc---------cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC--------
Confidence 999999999999996 3567999999999999999999999998765 3468999999999984
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhh-ccCCceEEEEeeCCcccCCCCcccc-
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF-HEETGIAFASLYPGCIATTGLFREH- 317 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~gi~v~~v~PG~v~T~~~~~~~- 317 (399)
|.+....|++||+++..|+|+|+... ..+.||++++||||+++|++. ++.
T Consensus 143 ---------------------------P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~-~~~~ 194 (261)
T KOG4169|consen 143 ---------------------------PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLA-ENID 194 (261)
T ss_pred ---------------------------ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHH-HHHH
Confidence 67888999999999999999998763 256799999999999999743 222
Q ss_pred -----chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 318 -----IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 318 -----~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
........+.+...+ ..+|++++..++..+.. ..+|+.|-++...
T Consensus 195 ~~~~~~e~~~~~~~~l~~~~---~q~~~~~a~~~v~aiE~---~~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 195 ASGGYLEYSDSIKEALERAP---KQSPACCAINIVNAIEY---PKNGAIWKVDSGS 244 (261)
T ss_pred hcCCcccccHHHHHHHHHcc---cCCHHHHHHHHHHHHhh---ccCCcEEEEecCc
Confidence 122222233333332 56899999999999876 4799999888754
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=258.40 Aligned_cols=244 Identities=20% Similarity=0.166 Sum_probs=202.4
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+++|++|||||+++||.+++++|+++|+ +|++++|+.+..+++.+.+...+.++.++.+|++|.++++++++.+.+.++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999995 999999998877777666655566789999999999999999999999899
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|++|||||.. ....+.+.+.++|++++++|+.+++++++.+.+.|.+.+ .++||++||..+..
T Consensus 80 ~~d~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~iss~~~~~------------ 144 (250)
T TIGR03206 80 PVDVLVNNAGWD-KFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG--AGRIVNIASDAARV------------ 144 (250)
T ss_pred CCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEECchhhcc------------
Confidence 999999999985 334566778899999999999999999999999998764 47999999988764
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch---h
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP---L 320 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~---~ 320 (399)
+.++...|+.+|++++.+++.++.++ ...||++++|+||.++|++....... .
T Consensus 145 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~ 200 (250)
T TIGR03206 145 -----------------------GSSGEAVYAACKGGLVAFSKTMAREH-ARHGITVNVVCPGPTDTALLDDICGGAENP 200 (250)
T ss_pred -----------------------CCCCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEecCcccchhHHhhhhccCCh
Confidence 23456689999999999999999998 55699999999999999854321110 0
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|+|+.+.++++++..+++|+++.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 201 EKLREAFTRAIPLGRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred HHHHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 01111222344456678999999999999999888899999999874
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=258.77 Aligned_cols=248 Identities=20% Similarity=0.225 Sum_probs=195.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++|+++||||++|||+++|+.|+++|+ +|++++|+.+..++..+.+... +..+.++.||++|++++.++++++.+.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999995 9999999988877777766332 234667799999999999999999999
Q ss_pred CCCccEEEecCcccCC--CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++++|+||||||.... ...+.+.+.++|+.++++|+.+++.++++++|.|++++ .++||++||..+..+...
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~~~---- 154 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG--GGNLVNISSIYGVVAPKF---- 154 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CceEEEEechhhhccccc----
Confidence 9999999999986421 23566788999999999999999999999999998765 479999999877631100
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
. ..+..+......|++||++++++++.++.++ .+.||+|++|+||.+.|+.. ...
T Consensus 155 --~-------------------~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~~i~v~~i~Pg~~~~~~~-~~~-- 209 (256)
T PRK09186 155 --E-------------------IYEGTSMTSPVEYAAIKAGIIHLTKYLAKYF-KDSNIRVNCVSPGGILDNQP-EAF-- 209 (256)
T ss_pred --h-------------------hccccccCCcchhHHHHHHHHHHHHHHHHHh-CcCCeEEEEEecccccCCCC-HHH--
Confidence 0 0000111223479999999999999999998 66799999999999987531 110
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+..++.+|+|+|+.+++++++...+++|+++.+||.
T Consensus 210 ----~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 210 ----LNAYKKCCNGKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred ----HHHHHhcCCccCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 00111122345678999999999999998888899999998874
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=257.43 Aligned_cols=244 Identities=24% Similarity=0.224 Sum_probs=200.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++||||+||||.+++++|+++|+ +|++++|+.+..+...+.+. .+.++.++.||++|+++++++++++.+.+
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999877776666654 45678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||+|... ...+.+.+.+++++++++|+.+++.+++.+++.|++.+ .++||++||..+..
T Consensus 80 ~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~~----------- 145 (252)
T PRK06138 80 GRLDVLVNNAGFGC-GGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG--GGSIVNTASQLALA----------- 145 (252)
T ss_pred CCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC--CeEEEEECChhhcc-----------
Confidence 99999999999864 34556778999999999999999999999999998765 47999999987764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh--
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-- 320 (399)
+.++...|+.+|++++.+++.++.++ ...||++++|+||.+.|++..+.....
T Consensus 146 ------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~ 200 (252)
T PRK06138 146 ------------------------GGRGRAAYVASKGAIASLTRAMALDH-ATDGIRVNAVAPGTIDTPYFRRIFARHAD 200 (252)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEECCccCcchhhhhccccC
Confidence 23456789999999999999999998 566999999999999998543211100
Q ss_pred hhhhchhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........ ...+..++.+|+|+|+.+++++.++..+.+|.++.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 201 PEALREALRARHPMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 01111111 112234577899999999999999888899999999874
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=255.64 Aligned_cols=231 Identities=22% Similarity=0.256 Sum_probs=184.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|++|||||++|||+++|+.|+++|+ +|+++.+ +.+..+++..++ .+.++.+|++|.+++.+++++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~-----~~~~~~~D~~~~~~~~~~~~~---- 72 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQET-----GATAVQTDSADRDAVIDVVRK---- 72 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHh-----CCeEEecCCCCHHHHHHHHHH----
Confidence 46789999999999999999999999996 7877665 455555444433 245788999999988877653
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|++|||||.... ....+.+.++|++++++|+.+++.+++.+++.|.+ .|+||++||..+..
T Consensus 73 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~isS~~~~~---------- 137 (237)
T PRK12742 73 SGALDILVVNAGIAVF-GDALELDADDIDRLFKINIHAPYHASVEAARQMPE----GGRIIIIGSVNGDR---------- 137 (237)
T ss_pred hCCCcEEEECCCCCCC-CCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc----CCeEEEEecccccc----------
Confidence 5789999999998633 34557789999999999999999999999999864 36999999987631
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.+.++...|+++|++++.+++.++.++ .++||+||+|+||+++|++... ..+..
T Consensus 138 ------------------------~~~~~~~~Y~~sKaa~~~~~~~la~~~-~~~gi~v~~v~Pg~~~t~~~~~-~~~~~ 191 (237)
T PRK12742 138 ------------------------MPVAGMAAYAASKSALQGMARGLARDF-GPRGITINVVQPGPIDTDANPA-NGPMK 191 (237)
T ss_pred ------------------------CCCCCCcchHHhHHHHHHHHHHHHHHH-hhhCeEEEEEecCcccCCcccc-ccHHH
Confidence 133566789999999999999999998 6679999999999999985432 21111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ......+.+++.+|+|+++.+.||+++...+++|+.+.+||.
T Consensus 192 ~---~~~~~~~~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~~~dgg 234 (237)
T PRK12742 192 D---MMHSFMAIKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDGA 234 (237)
T ss_pred H---HHHhcCCCCCCCCHHHHHHHHHHHcCcccCcccCCEEEeCCC
Confidence 1 111223457788999999999999999988999999999984
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=254.80 Aligned_cols=232 Identities=24% Similarity=0.212 Sum_probs=192.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCC--HHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLAS--LDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~--~~~v~~~~~~~~ 159 (399)
+|++|+++||||++|||+++++.|+++|+ +|++++|+.+..+...+++... +..+.++.+|+++ .+++.++++++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 57889999999999999999999999995 8999999988877777666433 3457788999986 578899999998
Q ss_pred HcC-CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 160 RSG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 160 ~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+.+ +++|+||||||......++.+.+.++|++++++|+.|++++++.+++.|.+.+ .++||++||..+..
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~ss~~~~~------- 152 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP--DASVIFVGESHGET------- 152 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--CCEEEEEecccccc-------
Confidence 877 78999999999864445677889999999999999999999999999998764 47999999977653
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.++....+|+|++|+||+|+|++..+...
T Consensus 153 ----------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~ 204 (239)
T PRK08703 153 ----------------------------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHP 204 (239)
T ss_pred ----------------------------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCC
Confidence 3355678999999999999999999843337999999999999996443211
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
.. . .....+++|++..+.|++++.+.+++|+.+.
T Consensus 205 ~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 238 (239)
T PRK08703 205 GE---A--------KSERKSYGDVLPAFVWWASAESKGRSGEIVY 238 (239)
T ss_pred CC---C--------ccccCCHHHHHHHHHHHhCccccCcCCeEee
Confidence 10 0 1124699999999999999988999999875
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=257.70 Aligned_cols=230 Identities=21% Similarity=0.217 Sum_probs=185.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++||||++|||.+++++|+++|+ +|++++|+.... ...++.++.+|++++ ++++.+.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~---------~~~~~~~~~~D~~~~------~~~~~~~~ 65 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGA-QVYGVDKQDKPD---------LSGNFHFLQLDLSDD------LEPLFDWV 65 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCC-EEEEEeCCcccc---------cCCcEEEEECChHHH------HHHHHHhh
Confidence 57889999999999999999999999995 899999875321 124678899999987 44444556
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.+.+++ .|+||++||..+..
T Consensus 66 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~----------- 132 (235)
T PRK06550 66 PSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK--SGIIINMCSIASFV----------- 132 (235)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcc-----------
Confidence 89999999999864334566788999999999999999999999999998765 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+.+|++++.+++.++.++ .++||+|++|+||+++|++......+ ..
T Consensus 133 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~~ 186 (235)
T PRK06550 133 ------------------------AGGGGAAYTASKHALAGFTKQLALDY-AKDGIQVFGIAPGAVKTPMTAADFEP-GG 186 (235)
T ss_pred ------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCccCcccccccCc-hH
Confidence 23456789999999999999999999 56799999999999999854322211 11
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++|++++...+++|+.+.+||.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 187 LADWVARETPIKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred HHHHHhccCCcCCCCCHHHHHHHHHHHcChhhccCCCcEEEECCc
Confidence 111112234567788999999999999999888899999999984
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=260.12 Aligned_cols=245 Identities=16% Similarity=0.106 Sum_probs=200.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.|++|++|||||+||||.+++++|+++|+ +|++++|+.+..+...+.+... +.++.++.+|++|+++++++++++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA 82 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999995 9999999987776666655433 35788999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|++|||||......++.+.+.++|..++++|+.+++.+++.+.+.|.+.+ .++||++||..+..
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~~sS~~~~~--------- 151 (276)
T PRK05875 83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGG--GGSFVGISSIAASN--------- 151 (276)
T ss_pred HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEechhhcC---------
Confidence 9999999999999764445566778899999999999999999999999998654 47999999987653
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|+++|++++.+++.++.++ ...+|++++|+||.++|++.... ...
T Consensus 152 --------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~Pg~v~t~~~~~~-~~~ 203 (276)
T PRK05875 152 --------------------------THRWFGAYGVTKSAVDHLMKLAADEL-GPSWVRVNSIRPGLIRTDLVAPI-TES 203 (276)
T ss_pred --------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCccCCcccccc-ccC
Confidence 23456789999999999999999998 56799999999999999855321 111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+..++.+|+|+|+.++++++++..+++|+++.+|+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 250 (276)
T PRK05875 204 PELSADYRACTPLPRVGEVEDVANLAMFLLSDAASWITGQVINVDGG 250 (276)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCC
Confidence 11111112233446678999999999999999888899999999885
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=259.79 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=183.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHH----HHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGM-AKENYTIMHLDLASLDSV----RQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v----~~~~~~~~~ 160 (399)
++++||||++|||+++++.|+++|+ +|++++| +.+.++...+++.. .+.++.++.+|++|++++ +++++.+.+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY-RVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC-eEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 5899999999999999999999996 8887654 55666666666643 245677899999999865 556666667
Q ss_pred cCCCccEEEecCcccCCCCCCCCCCh-----------hhhhHhhhchhhHHHHHHHHHHHHHhhCC----CCCceEEEEe
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTA-----------EGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVG 225 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~-----------~~~~~~~~~N~~g~~~l~~~~~~~l~~~~----~~~g~iV~vS 225 (399)
.++++|+||||||+... .++.+.+. ++|.+++++|+.+++++++++++.|+... ...++||+++
T Consensus 81 ~~g~iD~lv~nAG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~ 159 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYP-TPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC 159 (267)
T ss_pred ccCCceEEEECCccCCC-CcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence 78999999999998643 23323333 35899999999999999999999986532 1236899999
Q ss_pred ccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeC
Q 015844 226 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 305 (399)
Q Consensus 226 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~P 305 (399)
|..+.. +.+++.+|++||+|+++|++.++.|+ .+.||+|++|+|
T Consensus 160 s~~~~~-----------------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~P 203 (267)
T TIGR02685 160 DAMTDQ-----------------------------------PLLGFTMYTMAKHALEGLTRSAALEL-APLQIRVNGVAP 203 (267)
T ss_pred hhhccC-----------------------------------CCcccchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEec
Confidence 887653 44667789999999999999999999 667999999999
Q ss_pred CcccCCCCccccchhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 306 GCIATTGLFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 306 G~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|+++|+.... .. .........+. .++.+|+|+++.++|++++...+++|+++.+||.
T Consensus 204 G~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg 261 (267)
T TIGR02685 204 GLSLLPDAMP---FE--VQEDYRRKVPLGQREASAEQIADVVIFLVSPKAKYITGTCIKVDGG 261 (267)
T ss_pred CCccCccccc---hh--HHHHHHHhCCCCcCCCCHHHHHHHHHHHhCcccCCcccceEEECCc
Confidence 9998762111 10 00111122233 3578999999999999999888999999999984
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=257.91 Aligned_cols=247 Identities=21% Similarity=0.205 Sum_probs=201.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||..++++|+++|+.+|++++|+.+..+...+++...+.++.++.+|+++++++.++++.+.+.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999997449999999777766666665556678889999999999999999999888
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||... ...+.+.+.++|+.++++|+.+++++++.+++.|.+... .|+||++||..+..
T Consensus 83 g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~ss~~~~~----------- 149 (260)
T PRK06198 83 GRLDALVNAAGLTD-RGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKA-EGTIVNIGSMSAHG----------- 149 (260)
T ss_pred CCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECCccccc-----------
Confidence 99999999999863 345667899999999999999999999999999977532 37999999988763
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh--
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-- 320 (399)
+.+....|+.+|++++.|++.++.++ ...||+|++|+||++.|++........
T Consensus 150 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~ 204 (260)
T PRK06198 150 ------------------------GQPFLAAYCASKGALATLTRNAAYAL-LRNRIRVNGLNIGWMATEGEDRIQREFHG 204 (260)
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeccccCcchhhhhhhccC
Confidence 23456789999999999999999998 567999999999999998531100000
Q ss_pred --hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 --FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 --~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+++|+++.+++++++...+++|+++.+|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~ 253 (260)
T PRK06198 205 APDDWLEKAAATQPFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQS 253 (260)
T ss_pred CChHHHHHHhccCCccCCcCHHHHHHHHHHHcChhhCCccCceEeECCc
Confidence 01111111123345678999999999999998888899999999985
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=257.12 Aligned_cols=237 Identities=19% Similarity=0.183 Sum_probs=195.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||.+++++|+++|+ +|++++|+. +...+.++.++++|++++++++++++++.+.
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~---------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF---------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch---------hhhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 999999985 1122456889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||... ..++.+.+.++|++++++|+.+++++++.+.+.|++.+ .|+||++||..+..
T Consensus 74 ~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~~ss~~~~~---------- 140 (252)
T PRK08220 74 TGPLDVLVNAAGILR-MGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQR--SGAIVTVGSNAAHV---------- 140 (252)
T ss_pred cCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECCchhcc----------
Confidence 999999999999863 35666788999999999999999999999999998754 47999999987653
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.+++.++.++ .+.||+|++|+||.++|++.........
T Consensus 141 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~ 194 (252)
T PRK08220 141 -------------------------PRIGMAAYGASKAALTSLAKCVGLEL-APYGVRCNVVSPGSTDTDMQRTLWVDED 194 (252)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hHhCeEEEEEecCcCcchhhhhhccchh
Confidence 33466789999999999999999998 5679999999999999985432111100
Q ss_pred -hh------hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 -RL------LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 -~~------~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ........+.+++.+|+|+|+.+++|+++...+++|+.+..||.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg 247 (252)
T PRK08220 195 GEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFLASDLASHITLQDIVVDGG 247 (252)
T ss_pred hhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHHhcchhcCccCcEEEECCC
Confidence 00 01111223456788999999999999999888999999999884
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=254.32 Aligned_cols=240 Identities=20% Similarity=0.187 Sum_probs=197.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++++++||||++|||++++++|+++|+ .|++.+|+.++++.....+ +.++.++.+|+++.++++++++++.+.
T Consensus 2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 2 FDLSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAEL---GERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999995 8989999877776655444 346788999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||... ...+.+.+.++|++++++|+.+++++++++.+.+.+.+ .++||++||..+..
T Consensus 78 ~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 144 (245)
T PRK12936 78 LEGVDILVNNAGITK-DGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRR--YGRIINITSVVGVT---------- 144 (245)
T ss_pred cCCCCEEEECCCCCC-CCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhC--CCEEEEECCHHhCc----------
Confidence 999999999999863 34566778899999999999999999999999887654 47999999987764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+....|+.+|+++..+++.++.++ ...||++++|+||+++|++... ..+..
T Consensus 145 -------------------------~~~~~~~Y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~-~~~~~ 197 (245)
T PRK12936 145 -------------------------GNPGQANYCASKAGMIGFSKSLAQEI-ATRNVTVNCVAPGFIESAMTGK-LNDKQ 197 (245)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcCcCchhcc-cChHH
Confidence 22456689999999999999999998 5669999999999999974322 21111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. .......+..++.+|+|+++.+.+++++...+++|+++..|+.
T Consensus 198 ~--~~~~~~~~~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 198 K--EAIMGAIPMKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred H--HHHhcCCCCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 1 1111223456678999999999999988777899999998874
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=256.84 Aligned_cols=245 Identities=18% Similarity=0.208 Sum_probs=200.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||+++||+++++.|+++|+ +|++++|+++..++..+.+...+.++.++++|++|.++++++++++.+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 89999999888887777776666778899999999999999999998888
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHH-hhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l-~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||||... ...+.+.+.++|+..+++|+.+++.+++.+++.+ ++.+ .++||++||..+..
T Consensus 83 ~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~--~~~iv~~ss~~~~~---------- 149 (262)
T PRK13394 83 GSVDILVSNAGIQI-VNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR--GGVVIYMGSVHSHE---------- 149 (262)
T ss_pred CCCCEEEECCccCC-CCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC--CcEEEEEcchhhcC----------
Confidence 99999999999863 3455567889999999999999999999999999 5543 47999999976653
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+++|++++.+++.++.++ .+.+|++++|+||.++|++.........
T Consensus 150 -------------------------~~~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~~~ 203 (262)
T PRK13394 150 -------------------------ASPLKSAYVTAKHGLLGLARVLAKEG-AKHNVRSHVVCPGFVRTPLVDKQIPEQA 203 (262)
T ss_pred -------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccchhhhhhhHhhh
Confidence 22456789999999999999999998 5679999999999999985432211110
Q ss_pred hhh----chhhH-----HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLL----FPPFQ-----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~----~~~~~-----~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ..... ..+.+.+++|+|++++++++++.+....+|++|.+|+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g 258 (262)
T PRK13394 204 KELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHG 258 (262)
T ss_pred hccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCc
Confidence 000 01111 11235688999999999999998777789999999874
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=257.48 Aligned_cols=241 Identities=16% Similarity=0.161 Sum_probs=187.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC----hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~----~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.+++|++|||||++|||.++|+.|+++|+ +|++++++ .+..++..+++...+.++.++++|++++++++++++++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHH
Confidence 56789999999999999999999999996 65555432 34455555555544567889999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEE-eccccccCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIV-GSITGNTNTLAGN 237 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~v-SS~~~~~~~~~~~ 237 (399)
.+.++++|++|||||.... .++.+.+.++|++++++|+.+++.+++.+.|.|.+. |+++++ ||..+..
T Consensus 84 ~~~~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~----~~iv~~~ss~~~~~------ 152 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLK-KPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDN----GKIVTLVTSLLGAF------ 152 (257)
T ss_pred HHhhCCCCEEEECCcccCC-CCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccC----CCEEEEecchhccc------
Confidence 9999999999999998643 556678899999999999999999999999998753 577776 4544431
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
.+.+..|++||+|++.|+++++.|+ .+.||+|++|+||++.|++.....
T Consensus 153 ------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~t~~~~~~~ 201 (257)
T PRK12744 153 ------------------------------TPFYSAYAGSKAPVEHFTRAASKEF-GARGISVTAVGPGPMDTPFFYPQE 201 (257)
T ss_pred ------------------------------CCCcccchhhHHHHHHHHHHHHHHh-CcCceEEEEEecCccccchhcccc
Confidence 2355789999999999999999999 567999999999999998543221
Q ss_pred chhh-hhhchhhHHHHh--cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLF-RLLFPPFQKYIT--KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~-~~~~~~~~~~~~--~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+.. ..........+. .++..|+|+|+.+.||+++ ..+++|+.+.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~g~~~~~~gg 253 (257)
T PRK12744 202 GAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRFLVTD-GWWITGQTILINGG 253 (257)
T ss_pred ccchhhcccccccccccccCCCCCHHHHHHHHHHhhcc-cceeecceEeecCC
Confidence 1110 000011111112 3678999999999999996 56789999998874
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=253.96 Aligned_cols=241 Identities=20% Similarity=0.246 Sum_probs=195.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|+++||||++|||.++|++|+++|+ +|++.. |+.+..++..+.+...+.++.++.+|++|++++.++++++.+.
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGA-KVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 776654 4556666666666655667999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||... ...+.+.+.+++++++++|+.+++++++.++|.|.+.. .++||++||..+..+
T Consensus 82 ~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~--------- 149 (247)
T PRK12935 82 FGKVDILVNNAGITR-DRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAE--EGRIISISSIIGQAG--------- 149 (247)
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchhhcCC---------
Confidence 999999999999863 34556778899999999999999999999999998654 479999999877642
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.+++..|++||++++.+++.++.++ .+.||++++|+||.++|++... ....
T Consensus 150 --------------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~-~~~~- 200 (247)
T PRK12935 150 --------------------------GFGQTNYSAAKAGMLGFTKSLALEL-AKTNVTVNAICPGFIDTEMVAE-VPEE- 200 (247)
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEeCCCcChhhhh-ccHH-
Confidence 2456789999999999999999998 5679999999999999975432 2111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+..|||+++.+++++.+. .+.+|..+.+++.
T Consensus 201 -~~~~~~~~~~~~~~~~~edva~~~~~~~~~~-~~~~g~~~~i~~g 244 (247)
T PRK12935 201 -VRQKIVAKIPKKRFGQADEIAKGVVYLCRDG-AYITGQQLNINGG 244 (247)
T ss_pred -HHHHHHHhCCCCCCcCHHHHHHHHHHHcCcc-cCccCCEEEeCCC
Confidence 1111222233456789999999999999764 4689999988874
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=251.79 Aligned_cols=211 Identities=17% Similarity=0.118 Sum_probs=173.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+++||||++|||+++++.|+++|+ +|++++|+.++++...+++ .+.+++||++|+++++++++++.+ ++|+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~---~id~ 72 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKEL-----DVDAIVCDNTDPASLEEARGLFPH---HLDT 72 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc-----cCcEEecCCCCHHHHHHHHHHHhh---cCcE
Confidence 589999999999999999999995 9999999987777665544 256788999999999999887753 6999
Q ss_pred EEecCcccCC--C---CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 168 LVCNAAVYLP--T---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 168 lv~nAg~~~~--~---~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+|||||.... . ..+.+ +.++|++++++|+.++++++++++|.|++ +|+||++||.+.
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~----~g~Iv~isS~~~------------- 134 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS----GGSIISVVPENP------------- 134 (223)
T ss_pred EEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCeEEEEecCCC-------------
Confidence 9999985321 1 12323 57899999999999999999999999964 379999998651
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+....|++||+|+.+|++.++.|+ .++||+||+|+||+++|++....
T Consensus 135 --------------------------~~~~~Y~asKaal~~~~~~la~e~-~~~gI~v~~v~PG~v~t~~~~~~------ 181 (223)
T PRK05884 135 --------------------------PAGSAEAAIKAALSNWTAGQAAVF-GTRGITINAVACGRSVQPGYDGL------ 181 (223)
T ss_pred --------------------------CCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccCchhhhhc------
Confidence 234679999999999999999999 66799999999999999843110
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...+ ..+|+|+++.++||+++.+.+++|+.+.+||.
T Consensus 182 ------~~~p---~~~~~~ia~~~~~l~s~~~~~v~G~~i~vdgg 217 (223)
T PRK05884 182 ------SRTP---PPVAAEIARLALFLTTPAARHITGQTLHVSHG 217 (223)
T ss_pred ------cCCC---CCCHHHHHHHHHHHcCchhhccCCcEEEeCCC
Confidence 0111 23899999999999999999999999999984
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=256.28 Aligned_cols=217 Identities=24% Similarity=0.242 Sum_probs=185.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++++++|||||+||||+++++.|+++|+ +|++.+|+.+.+++..+.+. ++.++.||++|+++++++++.+.+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELG----LVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc----cceEEEccCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999995 89999999888777666553 47789999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||+.. ...+.+.+.+++++++++|+.|++.+++.++|.|.+++ .|+||++||.++..
T Consensus 77 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 142 (273)
T PRK07825 77 GPIDVLVNNAGVMP-VGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG--RGHVVNVASLAGKI----------- 142 (273)
T ss_pred CCCCEEEECCCcCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEEEcCccccC-----------
Confidence 99999999999874 45666788999999999999999999999999998865 47999999998764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+++..|++.++.++ .+.||++++|+||+++|++.... ..
T Consensus 143 ------------------------~~~~~~~Y~asKaa~~~~~~~l~~el-~~~gi~v~~v~Pg~v~t~~~~~~-~~--- 193 (273)
T PRK07825 143 ------------------------PVPGMATYCASKHAVVGFTDAARLEL-RGTGVHVSVVLPSFVNTELIAGT-GG--- 193 (273)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCcCcchhhccc-cc---
Confidence 34567889999999999999999998 66799999999999999854321 00
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.......+|+++|+.+++++.++..
T Consensus 194 --------~~~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 194 --------AKGFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred --------ccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 0012367999999999999987644
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=234.75 Aligned_cols=187 Identities=24% Similarity=0.282 Sum_probs=166.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|.+.|.|+|||||++|||+++|++|.+.| +.||+++|+++.++++.++. ..++...||+.|.++++++++.+++.
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elg-N~VIi~gR~e~~L~e~~~~~----p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELG-NTVIICGRNEERLAEAKAEN----PEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhC-CEEEEecCcHHHHHHHHhcC----cchheeeecccchhhHHHHHHHHHhh
Confidence 35689999999999999999999999999 69999999999888877654 56888999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCC-CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++.+++||||||+....... .+...++.++.+++|+.+++.|++.++|++.++. .+.||+|||..+..
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~--~a~IInVSSGLafv--------- 144 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP--EATIINVSSGLAFV--------- 144 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CceEEEeccccccC---------
Confidence 99999999999998543222 2445677888999999999999999999999885 58999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
|......||++|+|+..|+.+|..++ +..+|.|.-+.|.+|+|+
T Consensus 145 --------------------------Pm~~~PvYcaTKAaiHsyt~aLR~Ql-k~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 --------------------------PMASTPVYCATKAAIHSYTLALREQL-KDTSVEVIELAPPLVDTT 188 (245)
T ss_pred --------------------------cccccccchhhHHHHHHHHHHHHHHh-hhcceEEEEecCCceecC
Confidence 55667799999999999999999998 677999999999999996
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=252.81 Aligned_cols=244 Identities=21% Similarity=0.230 Sum_probs=201.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+++|++|||||+++||.+++++|+++| ++|++++|+.+..+....++...+.++.++.||++|+++++++++.+.+.++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999 4999999998887777777766667889999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||... .....+.+.++++.++++|+.+++++++.+++.|++.+ .++||++||..+..
T Consensus 81 ~~d~vi~~a~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~~~~~------------ 145 (258)
T PRK12429 81 GVDILVNNAGIQH-VAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG--GGRIINMASVHGLV------------ 145 (258)
T ss_pred CCCEEEECCCCCC-CCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CeEEEEEcchhhcc------------
Confidence 9999999999863 34566778899999999999999999999999998765 47999999987764
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh---
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL--- 320 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~--- 320 (399)
+.++...|+++|+++..+++.++.++ .+.||++++|+||++.|++........
T Consensus 146 -----------------------~~~~~~~y~~~k~a~~~~~~~l~~~~-~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~ 201 (258)
T PRK12429 146 -----------------------GSAGKAAYVSAKHGLIGLTKVVALEG-ATHGVTVNAICPGYVDTPLVRKQIPDLAKE 201 (258)
T ss_pred -----------------------CCCCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCcchhhhhhhhhhccc
Confidence 33567789999999999999999998 667999999999999998543211110
Q ss_pred -----hhhhchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 -----FRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 -----~~~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......+. ..+.+++++++|+|+.+++++.+....++|+++.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 202 RGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred cCCChHHHHHHHHhccCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 000000111 11235688999999999999988777789999999874
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=253.01 Aligned_cols=240 Identities=18% Similarity=0.098 Sum_probs=193.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCC--CcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++||||++|||+++++.|+++|+ +|++++|+ .+.++...+.+.... ..+..+.+|++|+++++++++++.+.++++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 79999999999999999999995 99999998 666666665554322 235668899999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||||... ...+.+.+.+++++++++|+.+++.+++.+++.|++.+ .++||++||..+..
T Consensus 81 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~ss~~~~~-------------- 143 (251)
T PRK07069 81 SVLVNNAGVGS-FGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ--PASIVNISSVAAFK-------------- 143 (251)
T ss_pred cEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEecChhhcc--------------
Confidence 99999999863 35566788999999999999999999999999998764 47999999988764
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-CCceEEEEeeCCcccCCCCccccc--hhhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHI--PLFR 322 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~~gi~v~~v~PG~v~T~~~~~~~~--~~~~ 322 (399)
+.+++..|+++|++++.+++.++.++.. ..+|+|++|+||+++|++...... ....
T Consensus 144 ---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~ 202 (251)
T PRK07069 144 ---------------------AEPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEE 202 (251)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchh
Confidence 2356678999999999999999999842 236999999999999986532110 0011
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~~g 247 (251)
T PRK07069 203 ATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVTGAELVIDGG 247 (251)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 111122233446678999999999999999888999999998874
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=282.66 Aligned_cols=234 Identities=20% Similarity=0.227 Sum_probs=194.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+.++++|||||++|||+++|++|+++|+ +|++++|+.++++++.+.++..+.++.++.||++|.++++++++++.+.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457789999999999999999999999995 8999999988888887777666778899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|++|+||||||+.. ...+.+.+.++|++++++|+.|+++++++++|.|.+++. +|+||++||.++..
T Consensus 390 ~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~---------- 457 (582)
T PRK05855 390 HGVPDIVVNNAGIGM-AGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGT-GGHIVNVASAAAYA---------- 457 (582)
T ss_pred cCCCcEEEECCccCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECChhhcc----------
Confidence 999999999999964 456778899999999999999999999999999988642 47999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.|+ .+.||+|++|+||+|+|+++.....+..
T Consensus 458 -------------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 511 (582)
T PRK05855 458 -------------------------PSRSLPAYATSKAAVLMLSECLRAEL-AAAGIGVTAICPGFVDTNIVATTRFAGA 511 (582)
T ss_pred -------------------------CCCCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCCCcccchhccccCCc
Confidence 33567889999999999999999999 5679999999999999986543221100
Q ss_pred -----hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 322 -----RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 322 -----~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
..........+..+..+||++|+.+++.+....
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~~~~~~~ 549 (582)
T PRK05855 512 DAEDEARRRGRADKLYQRRGYGPEKVAKAIVDAVKRNK 549 (582)
T ss_pred ccchhhhHHhhhhhhccccCCCHHHHHHHHHHHHHcCC
Confidence 000111122223345699999999999997654
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=250.74 Aligned_cols=236 Identities=17% Similarity=0.164 Sum_probs=188.9
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
..+|++|||||++|||++++++|+++|+ +|+++.+ +.+..+.+.+++...+.++.++.||++|.+++.++++++.+.+
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999996 7766554 5555666666665556678899999999999999999999888
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||... ..++.+.+.++|++++++|+.+++++++++.+.+.+.. .++||+++|..+..
T Consensus 86 ~~iD~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~~s~~~~~----------- 151 (258)
T PRK09134 86 GPITLLVNNASLFE-YDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADA--RGLVVNMIDQRVWN----------- 151 (258)
T ss_pred CCCCEEEECCcCCC-CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CceEEEECchhhcC-----------
Confidence 99999999999863 34566788999999999999999999999999988754 47999998865542
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+.+..|++||++++.+++.++.++ .+ +|+|++|+||++.|... . ....
T Consensus 152 ------------------------~~p~~~~Y~~sK~a~~~~~~~la~~~-~~-~i~v~~i~PG~v~t~~~-~-~~~~-- 201 (258)
T PRK09134 152 ------------------------LNPDFLSYTLSKAALWTATRTLAQAL-AP-RIRVNAIGPGPTLPSGR-Q-SPED-- 201 (258)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cC-CcEEEEeecccccCCcc-c-ChHH--
Confidence 23455689999999999999999998 44 49999999999988631 1 1111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+.......+.++..+|+|+|+.++++++.+ +++|+++.+||.
T Consensus 202 -~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~--~~~g~~~~i~gg 243 (258)
T PRK09134 202 -FARQHAATPLGRGSTPEEIAAAVRYLLDAP--SVTGQMIAVDGG 243 (258)
T ss_pred -HHHHHhcCCCCCCcCHHHHHHHHHHHhcCC--CcCCCEEEECCC
Confidence 111222234456689999999999999854 579999998884
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=256.62 Aligned_cols=222 Identities=19% Similarity=0.186 Sum_probs=183.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+.+.+|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|.+++.++++.+.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999995 999999998888887777765566788999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCC--ChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~--~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.++++|++|||||+... .++.+. +.++++.++++|+.|+++++++++|.|++.+ .|+||++||.++..
T Consensus 114 ~~g~id~li~~AG~~~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~------- 183 (293)
T PRK05866 114 RIGGVDILINNAGRSIR-RPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG--DGHIINVATWGVLS------- 183 (293)
T ss_pred HcCCCCEEEECCCCCCC-cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECChhhcC-------
Confidence 99999999999998643 333332 4578899999999999999999999998765 47999999975442
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.+.++...|++||+|+++|++.++.|+ .+.||+|++|+||+|+|+++....
T Consensus 184 ---------------------------~~~p~~~~Y~asKaal~~l~~~la~e~-~~~gI~v~~v~pg~v~T~~~~~~~- 234 (293)
T PRK05866 184 ---------------------------EASPLFSVYNASKAALSAVSRVIETEW-GDRGVHSTTLYYPLVATPMIAPTK- 234 (293)
T ss_pred ---------------------------CCCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEcCcccCccccccc-
Confidence 023456789999999999999999999 667999999999999998653211
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
. . ......+||++|+.++..+...
T Consensus 235 ~----~-------~~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 235 A----Y-------DGLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred c----c-------cCCCCCCHHHHHHHHHHHHhcC
Confidence 0 0 0112469999999999988654
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=248.77 Aligned_cols=238 Identities=21% Similarity=0.271 Sum_probs=196.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|++|||||++|||++++++|+++|+ +|+++.| +....++..+++...+.++.++.+|++|+++++++++++.+.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999996 8888777 6555555555554445678899999999999999999999989999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||... ...+.+.+.++|++++++|+.+++.+++.+++.|++.+ .++||++||..+..
T Consensus 80 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~iss~~~~~-------------- 142 (242)
T TIGR01829 80 DVLVNNAGITR-DATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG--WGRIINISSVNGQK-------------- 142 (242)
T ss_pred cEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcC--------------
Confidence 99999999863 34566778999999999999999999999999998765 47999999987663
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|+++|+++..+++.++.++ ...||++++|+||+++|++... ..+. ...
T Consensus 143 ---------------------~~~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~-~~~~--~~~ 197 (242)
T TIGR01829 143 ---------------------GQFGQTNYSAAKAGMIGFTKALAQEG-ATKGVTVNTISPGYIATDMVMA-MRED--VLN 197 (242)
T ss_pred ---------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCCCcCccccc-cchH--HHH
Confidence 23456789999999999999999998 5679999999999999985432 1111 111
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
......+..++.+|+++++.+.++++++..+++|+.+.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 198 SIVAQIPVGRLGRPEEIAAAVAFLASEEAGYITGATLSINGG 239 (242)
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 122233456678999999999999999888899999999985
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=251.26 Aligned_cols=242 Identities=21% Similarity=0.225 Sum_probs=194.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++++++||||+||||.++|++|+++|+ +|++ ..|+.++.++..+.+...+.++.++.+|++|++++.++++++.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999996 7766 578877776666666544567889999999999999999999887
Q ss_pred C------CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 162 G------RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 162 ~------g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
+ +++|++|||||... ...+.+.+.+.|+.++++|+.+++++++.+++.|.+. ++||++||..+..
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~v~~sS~~~~~---- 152 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGT-QGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE----GRVINISSAEVRL---- 152 (254)
T ss_pred hccccCCCCccEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC----CEEEEECCHHhcC----
Confidence 6 47999999999863 3556677899999999999999999999999998653 5999999987763
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|++||++++.+++.++.++ .+.|+++++|+||+++|++...
T Consensus 153 -------------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~~ 200 (254)
T PRK12746 153 -------------------------------GFTGSIAYGLSKGALNTMTLPLAKHL-GERGITVNTIMPGYTKTDINAK 200 (254)
T ss_pred -------------------------------CCCCCcchHhhHHHHHHHHHHHHHHH-hhcCcEEEEEEECCccCcchhh
Confidence 33566789999999999999999998 5679999999999999985432
Q ss_pred ccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.................++..+++|+|+.+.+++++....++|..+..++.
T Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 201 -LLDDPEIRNFATNSSVFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred -hccChhHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 111111111111222345677999999999999988766789998888763
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=248.44 Aligned_cols=242 Identities=21% Similarity=0.202 Sum_probs=200.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++.+|++|||||+++||.+++++|+++|+ +|+++ +|+.+..+...+.+...+.++.++.+|++|++++.++++.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999995 88888 99887777766666555567889999999999999999999998
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||+|.. ....+.+.+.++|++++++|+.+++++++.+.+.+.+.+ .++||++||..+..
T Consensus 81 ~~~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~---------- 147 (247)
T PRK05565 81 FGKIDILVNNAGIS-NFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRK--SGVIVNISSIWGLI---------- 147 (247)
T ss_pred hCCCCEEEECCCcC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECCHhhcc----------
Confidence 89999999999987 445566778999999999999999999999999998764 47899999987764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+....|+.+|++++.+++.++.++ ...||++++|+||.++|+.. +...+.
T Consensus 148 -------------------------~~~~~~~y~~sK~a~~~~~~~~~~~~-~~~gi~~~~v~pg~v~t~~~-~~~~~~- 199 (247)
T PRK05565 148 -------------------------GASCEVLYSASKGAVNAFTKALAKEL-APSGIRVNAVAPGAIDTEMW-SSFSEE- 199 (247)
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCccCccc-cccChH-
Confidence 22455689999999999999999998 56799999999999999743 222221
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+..+..+|+++++.++++++......+|+++.+|+.
T Consensus 200 -~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 200 -DKEGLAEEIPLGRLGKPEEIAKVVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred -HHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEecCC
Confidence 111111123335567999999999999999888899999999885
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=253.11 Aligned_cols=223 Identities=23% Similarity=0.210 Sum_probs=180.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++|+++||||+||||+++++.|+++|+ +|++++|+.+++++... ..+.++.+|++|.++++++++++.+.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS------LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999995 99999999876654432 24778999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+. ...++.+.+.++|+.++++|+.+++.+++.++|.|++.+ .|+||++||..+..
T Consensus 75 id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~------------- 138 (273)
T PRK06182 75 IDVLVNNAGYG-SYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR--SGRIINISSMGGKI------------- 138 (273)
T ss_pred CCEEEECCCcC-CCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhcC-------------
Confidence 99999999986 445677889999999999999999999999999998765 47999999987653
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc------
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI------ 318 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~------ 318 (399)
+.+....|++||+++++|++.++.++ .+.||+|++|+||+|+|++......
T Consensus 139 ----------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~ 195 (273)
T PRK06182 139 ----------------------YTPLGAWYHATKFALEGFSDALRLEV-APFGIDVVVIEPGGIKTEWGDIAADHLLKTS 195 (273)
T ss_pred ----------------------CCCCccHhHHHHHHHHHHHHHHHHHh-cccCCEEEEEecCCcccccchhhhhhhcccc
Confidence 22345579999999999999999998 6779999999999999985321100
Q ss_pred ---hhhhh---hc-hhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 319 ---PLFRL---LF-PPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 319 ---~~~~~---~~-~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
..... .. ......+.+++.+|+++|+.++++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~~~~~ 237 (273)
T PRK06182 196 GNGAYAEQAQAVAASMRSTYGSGRLSDPSVIADAISKAVTAR 237 (273)
T ss_pred cccchHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHhCC
Confidence 00000 00 1111223456789999999999999853
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=248.34 Aligned_cols=241 Identities=20% Similarity=0.208 Sum_probs=195.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++++++|||||++|||.++++.|+++|+ +|++++|+.++.+...+++...+.++.++++|+++.++++++++.+.+.+
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 89999999888777777776556788899999999999999999998888
Q ss_pred CCccEEEecCcccCCCC-------CC-CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 163 RPLDVLVCNAAVYLPTA-------KE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~-------~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
+++|+||||||...... .+ .+.+.++|+.++++|+.+++++++.+.+.|.+... .++||++||....
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~-~~~iv~~ss~~~~---- 155 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGS-KGVIINISSIARA---- 155 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CeEEEEEcccccc----
Confidence 89999999999753211 11 46688999999999999999999999999977542 4789999886432
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.++...|++||++++.++++++.++ .+.||++++|+||+++|++..
T Consensus 156 --------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~pg~v~t~~~~ 202 (253)
T PRK08217 156 --------------------------------GNMGQTNYSASKAGVAAMTVTWAKEL-ARYGIRVAAIAPGVIETEMTA 202 (253)
T ss_pred --------------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCcccc
Confidence 22456789999999999999999998 567999999999999998543
Q ss_pred cccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..+. .........+.+.+.+|+|+|+.+.+++.+ .+++|..+.+||.
T Consensus 203 ~-~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~g~~~~~~gg 250 (253)
T PRK08217 203 A-MKPE--ALERLEKMIPVGRLGEPEEIAHTVRFIIEN--DYVTGRVLEIDGG 250 (253)
T ss_pred c-cCHH--HHHHHHhcCCcCCCcCHHHHHHHHHHHHcC--CCcCCcEEEeCCC
Confidence 2 2221 111122233445678999999999999964 4689999999884
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=247.45 Aligned_cols=238 Identities=20% Similarity=0.237 Sum_probs=194.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|++|||||++|||.++|++|+++|+ +|++++|+.. ...+........+.++.++.+|++|.++++++++.+.+.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i 81 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY-RVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999995 9999999853 2333333333345678899999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||+|... ...+.+.+.++|++++++|+.+++++++.+++.+++.+ .++||++||..+..
T Consensus 82 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~~~~~-------------- 144 (245)
T PRK12824 82 DILVNNAGITR-DSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG--YGRIINISSVNGLK-------------- 144 (245)
T ss_pred CEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--CeEEEEECChhhcc--------------
Confidence 99999999863 34566788999999999999999999999999998754 47999999987763
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|+++|++++.|++.++.++ .+.||++++|+||.+.|++... ..+ ....
T Consensus 145 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~-~~~--~~~~ 199 (245)
T PRK12824 145 ---------------------GQFGQTNYSAAKAGMIGFTKALASEG-ARYGITVNCIAPGYIATPMVEQ-MGP--EVLQ 199 (245)
T ss_pred ---------------------CCCCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEEcccCCcchhh-cCH--HHHH
Confidence 33466789999999999999999998 5679999999999999984322 111 1111
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
......+.+.+.+++|+++.+.+++++...+++|+.+.+||.
T Consensus 200 ~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12824 200 SIVNQIPMKRLGTPEEIAAAVAFLVSEAAGFITGETISINGG 241 (245)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEECCC
Confidence 122233455678999999999999988877899999999985
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=250.45 Aligned_cols=237 Identities=21% Similarity=0.200 Sum_probs=191.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+|++|||||+||||+++++.|+++|+ .|++++|+.+.++...+.+ +.++.++++|++|+++++++++.+.+.+++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKY---GDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999994 8999999987766655443 346788999999999999999999998999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|++|||||+. ...++.+.+.++|++++++|+.+++++++.++|.|++.+ .++||++||..+..
T Consensus 78 ~d~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~~------------- 141 (275)
T PRK08263 78 LDIVVNNAGYG-LFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR--SGHIIQISSIGGIS------------- 141 (275)
T ss_pred CCEEEECCCCc-cccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEcChhhcC-------------
Confidence 99999999986 445677889999999999999999999999999998765 47999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-----h
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-----P 319 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-----~ 319 (399)
+.++...|+.+|++++.+++.++.++ .+.||+|++|+||.++|++...... .
T Consensus 142 ----------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~ 198 (275)
T PRK08263 142 ----------------------AFPMSGIYHASKWALEGMSEALAQEV-AEFGIKVTLVEPGGYSTDWAGTSAKRATPLD 198 (275)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCccCCccccccccCCCch
Confidence 33556789999999999999999998 5679999999999999986532110 1
Q ss_pred hhhhh-chhhHHHHhcCC-CChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLL-FPPFQKYITKGY-VSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~-~~~~~~~~~~~~-~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..... .......+..++ .+|+|+|+.+++++..+. .+++|+...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~~~--~~~~~~~~~~ 245 (275)
T PRK08263 199 AYDTLREELAEQWSERSVDGDPEAAAEALLKLVDAEN--PPLRLFLGSG 245 (275)
T ss_pred hhhhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCC--CCeEEEeCch
Confidence 11111 112222344556 899999999999998763 4677876554
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=249.61 Aligned_cols=216 Identities=21% Similarity=0.262 Sum_probs=180.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++|||||++|||.+++++|+++|+ +|++++|+.+.+++..+++...+ ++.++.||++|.+++.++++++.++++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999995 99999999888777766664433 78899999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||+........+.+.++|+.++++|+.|++++++.++|.|++.+ .++||++||.++..
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~--~~~iv~isS~~~~~-------------- 143 (257)
T PRK07024 80 DVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR--RGTLVGIASVAGVR-------------- 143 (257)
T ss_pred CEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC--CCEEEEEechhhcC--------------
Confidence 99999999864322233367899999999999999999999999998765 47999999998874
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|++||++++.|+++++.|+ ++.||+|++|+||+|+|++......
T Consensus 144 ---------------------~~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~------- 194 (257)
T PRK07024 144 ---------------------GLPGAGAYSASKAAAIKYLESLRVEL-RPAGVRVVTIAPGYIRTPMTAHNPY------- 194 (257)
T ss_pred ---------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCcCchhhcCCC-------
Confidence 33566789999999999999999998 5679999999999999985422110
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
......+|+++|+.++..+.+..
T Consensus 195 ------~~~~~~~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 195 ------PMPFLMDADRFAARAARAIARGR 217 (257)
T ss_pred ------CCCCccCHHHHHHHHHHHHhCCC
Confidence 00124689999999999987643
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=250.45 Aligned_cols=226 Identities=19% Similarity=0.183 Sum_probs=188.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+||||++++++|+++|+ +|++++|+.+..++....+...+.++.++.||++|+++++++++.+.+.++++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999995 999999998888887777766677889999999999999999999999899999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||+.. ...+.+.+.++|++++++|+.+++.+++.++|.|.+.+ .++||++||..+..
T Consensus 80 ~lI~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~vsS~~~~~--------------- 141 (270)
T PRK05650 80 VIVNNAGVAS-GGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK--SGRIVNIASMAGLM--------------- 141 (270)
T ss_pred EEEECCCCCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEECChhhcC---------------
Confidence 9999999863 35667788999999999999999999999999998764 47999999988764
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
+.++...|+++|+++++|++.++.++ .+.||++++|+||+++|++... ..........
T Consensus 142 --------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~~ 199 (270)
T PRK05650 142 --------------------QGPAMSSYNVAKAGVVALSETLLVEL-ADDEIGVHVVCPSFFQTNLLDS-FRGPNPAMKA 199 (270)
T ss_pred --------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccccCcccc-cccCchhHHH
Confidence 34567899999999999999999998 5679999999999999985432 1111111112
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
...........+|+++|+.++..+.+.
T Consensus 200 ~~~~~~~~~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 200 QVGKLLEKSPITAADIADYIYQQVAKG 226 (270)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhCC
Confidence 222223344679999999999998764
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=248.99 Aligned_cols=240 Identities=18% Similarity=0.237 Sum_probs=195.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||++++++|+++|+ +|++++|+....+...+.+. +.++.++.+|++|.+++..+++++.++++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--DARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999995 89999999887777766653 3468899999999999999999999989999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||+|.... .++.+.+.++|...+++|+.+++.+++++.+.+.+.+ .++||++||..+..
T Consensus 79 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~-------------- 141 (257)
T PRK07074 79 DVLVANAGAARA-ASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRS--RGAVVNIGSVNGMA-------------- 141 (257)
T ss_pred CEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhcC--------------
Confidence 999999998643 4566778899999999999999999999999988764 47999999976542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
..+...|+.+|++++.+++.++.++ .+.||+|++++||+++|++.............
T Consensus 142 ----------------------~~~~~~y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~ 198 (257)
T PRK07074 142 ----------------------ALGHPAYSAAKAGLIHYTKLLAVEY-GRFGIRANAVAPGTVKTQAWEARVAANPQVFE 198 (257)
T ss_pred ----------------------CCCCcccHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCCcchhhcccccChHHHH
Confidence 1134579999999999999999998 66799999999999999854321111111111
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
......+...+..++|+++.+++++++...+.+|+++.+|+..
T Consensus 199 ~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 241 (257)
T PRK07074 199 ELKKWYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGGL 241 (257)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCc
Confidence 1112234466889999999999999887778999999988853
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=246.97 Aligned_cols=242 Identities=19% Similarity=0.200 Sum_probs=194.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|++|||||+||||.+++++|+++|+ +|++ ..|+.+..++...++...+.++.+++||++|+++++++++++.+.++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY-TVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999996 7765 5677776666666665556678899999999999999999999989999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
|+||||||.......+.+.+.++|+.++++|+.+++.+++.+++.+.+... ..|+||++||..+..+.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------- 149 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------- 149 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----------
Confidence 999999998645556667888999999999999999999999999876531 24789999998776421
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
...+..|+++|++++.+++.++.++ .+.||++++|+||.+.|++......+ ...
T Consensus 150 -----------------------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~i~pg~~~~~~~~~~~~~--~~~ 203 (247)
T PRK09730 150 -----------------------PGEYVDYAASKGAIDTLTTGLSLEV-AAQGIRVNCVRPGFIYTEMHASGGEP--GRV 203 (247)
T ss_pred -----------------------CCcccchHhHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCCCcCcccccCCCH--HHH
Confidence 0123469999999999999999998 56799999999999999854322111 111
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.......+..+..+|+|+|+.+++++++...+.+|.++.+||
T Consensus 204 ~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 245 (247)
T PRK09730 204 DRVKSNIPMQRGGQPEEVAQAIVWLLSDKASYVTGSFIDLAG 245 (247)
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHhhcChhhcCccCcEEecCC
Confidence 111222344456799999999999999887789999999887
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=246.38 Aligned_cols=240 Identities=23% Similarity=0.252 Sum_probs=194.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec----ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR----DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++++++++||||++|||+++|+.|+++|+ .|++++| +.+..+...+++...+.++.++.+|++|.++++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 46788999999999999999999999995 7887654 444555555555555668899999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHH-HHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL-DDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~-~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
.+.++++|+||||||... ...+.+.+.++|++.+++|+.+++++++++. +.+.+.. .++||++||..+..
T Consensus 82 ~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~------ 152 (249)
T PRK12827 82 VEEFGRLDILVNNAGIAT-DAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARR--GGRIVNIASVAGVR------ 152 (249)
T ss_pred HHHhCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--CeEEEEECCchhcC------
Confidence 988889999999999864 3566678899999999999999999999999 5555443 46999999988764
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|+.+|++++.+++.++.++ .+.||++++|+||+++|++.....
T Consensus 153 -----------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~~~ 202 (249)
T PRK12827 153 -----------------------------GNRGQVNYAASKAGLIGLTKTLANEL-APRGITVNAVAPGAINTPMADNAA 202 (249)
T ss_pred -----------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEECCcCCCcccccc
Confidence 23456789999999999999999998 566999999999999998543221
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+. . ......+.....+++++|+.+++++++....++|+++.+||.
T Consensus 203 -~~-~---~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 203 -PT-E---HLLNPVPVQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred -hH-H---HHHhhCCCcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 11 0 112223334556999999999999988877899999999874
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=278.81 Aligned_cols=247 Identities=17% Similarity=0.229 Sum_probs=201.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..+.+|++|||||++|||+++|++|+++|+ +|++++|+.+..+...+.+.. ...++..++||++|.++++++++++.
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~ 488 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA 488 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999996 999999998777766666542 12367889999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.+|++|+||||||+.. ..++.+.+.++|+..+++|+.+++++++.+++.|++++. +++||++||..+..
T Consensus 489 ~~~g~iDilV~nAG~~~-~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~-~g~IV~iSS~~a~~-------- 558 (676)
T TIGR02632 489 LAYGGVDIVVNNAGIAT-SSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGL-GGNIVFIASKNAVY-------- 558 (676)
T ss_pred HhcCCCcEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeChhhcC--------
Confidence 99999999999999863 356667889999999999999999999999999987542 47999999988764
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC-CCcccc-
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT-GLFREH- 317 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~-~~~~~~- 317 (399)
+.++...|++||++++.+++.++.++ .+.||+||+|+||.|.|. .+....
T Consensus 559 ---------------------------~~~~~~aY~aSKaA~~~l~r~lA~el-~~~gIrVn~V~Pg~V~~~s~~~~~~~ 610 (676)
T TIGR02632 559 ---------------------------AGKNASAYSAAKAAEAHLARCLAAEG-GTYGIRVNTVNPDAVLQGSGIWDGEW 610 (676)
T ss_pred ---------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEECCceecCcccccccc
Confidence 23567899999999999999999998 567999999999999652 222111
Q ss_pred chh--------hhhhch-hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPL--------FRLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~--------~~~~~~-~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ...+.. .....+.++.++|+|+|+.++|++++...++||+++.+||.
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG 669 (676)
T TIGR02632 611 REERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGG 669 (676)
T ss_pred hhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence 000 000111 22344567789999999999999998877899999999985
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=246.06 Aligned_cols=223 Identities=20% Similarity=0.209 Sum_probs=187.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++|+++||||++|||++++++|+++|+ +|++++|+.++.+++.+.+...+.++.++.+|++|++++.++++.+.+.+++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999995 9999999988777777766655667889999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||... ..++.+.+.+++++++++|+.+++++++.+++.|.+.+ .++||++||..+..
T Consensus 84 id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~------------- 147 (241)
T PRK07454 84 PDVLINNAGMAY-TGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG--GGLIINVSSIAARN------------- 147 (241)
T ss_pred CCEEEECCCccC-CCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhCc-------------
Confidence 999999999863 34566778899999999999999999999999998764 47999999987753
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
+.+++..|+.+|++++.+++.++.++ .+.||++++|+||+++|++.......
T Consensus 148 ----------------------~~~~~~~Y~~sK~~~~~~~~~~a~e~-~~~gi~v~~i~pg~i~t~~~~~~~~~----- 199 (241)
T PRK07454 148 ----------------------AFPQWGAYCVSKAALAAFTKCLAEEE-RSHGIRVCTITLGAVNTPLWDTETVQ----- 199 (241)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCcccCCcccccccc-----
Confidence 33556789999999999999999998 56699999999999999854321110
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~ 356 (399)
. .....+..+|+++|+.++++++.+...
T Consensus 200 -~---~~~~~~~~~~~~va~~~~~l~~~~~~~ 227 (241)
T PRK07454 200 -A---DFDRSAMLSPEQVAQTILHLAQLPPSA 227 (241)
T ss_pred -c---ccccccCCCHHHHHHHHHHHHcCCccc
Confidence 0 011134679999999999999987554
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=257.56 Aligned_cols=215 Identities=18% Similarity=0.161 Sum_probs=171.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCC--HHHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLAS--LDSVRQFVDTFRR 160 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~--~~~v~~~~~~~~~ 160 (399)
.|++++||||++|||+++|++|+++|+ +|++++|+.+++++..+++... +.++..+.+|+++ .+.++++.+.+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~- 129 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE- 129 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc-
Confidence 589999999999999999999999996 8999999999888888777543 3468889999985 333444433331
Q ss_pred cCCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
..++|++|||||+... ...+.+.+.+++++++++|+.|++.+++.++|.|.+++ .|+||++||.++...
T Consensus 130 -~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~a~~~~------- 199 (320)
T PLN02780 130 -GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGAIINIGSGAAIVI------- 199 (320)
T ss_pred -CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CcEEEEEechhhccC-------
Confidence 1247799999998643 24566789999999999999999999999999998765 589999999887520
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
.+.+....|++||+++++|+++|+.|+ ++.||+|++|+||+|+|++......
T Consensus 200 --------------------------~~~p~~~~Y~aSKaal~~~~~~L~~El-~~~gI~V~~v~PG~v~T~~~~~~~~- 251 (320)
T PLN02780 200 --------------------------PSDPLYAVYAATKAYIDQFSRCLYVEY-KKSGIDVQCQVPLYVATKMASIRRS- 251 (320)
T ss_pred --------------------------CCCccchHHHHHHHHHHHHHHHHHHHH-hccCeEEEEEeeCceecCcccccCC-
Confidence 012567899999999999999999999 6679999999999999985431100
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~ 352 (399)
. ....+||++|+.++..+..
T Consensus 252 ------~-------~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 252 ------S-------FLVPSSDGYARAALRWVGY 271 (320)
T ss_pred ------C-------CCCCCHHHHHHHHHHHhCC
Confidence 0 0135899999999998854
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=248.00 Aligned_cols=239 Identities=23% Similarity=0.216 Sum_probs=188.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC-
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP- 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~- 164 (399)
|++|||||++|||+++|+.|+++|+ +|++++|+. +..+...+ ..+.+++++.+|++|.++++++++++.+.++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTKLAE---QYNSNLTFHSLDLQDVHELETNFNEILSSIQED 77 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHHHHh---ccCCceEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 6899999999999999999999996 899999986 33333322 22457889999999999999999998776543
Q ss_pred -c--cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 165 -L--DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 165 -i--d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+ +++|||||...+..++.+.+.++|.+.+++|+.+++.+++.+++.|++.+. .++||++||..+..
T Consensus 78 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 146 (251)
T PRK06924 78 NVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKV-DKRVINISSGAAKN---------- 146 (251)
T ss_pred cCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCC-CceEEEecchhhcC----------
Confidence 2 289999998655566778899999999999999999999999999987431 36999999977652
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCccc---c
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFRE---H 317 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~---~ 317 (399)
++++...|+++|++++.|++.++.++. .+.||+|++|+||+++|++.... .
T Consensus 147 -------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~ 201 (251)
T PRK06924 147 -------------------------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSS 201 (251)
T ss_pred -------------------------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcC
Confidence 456788999999999999999999973 24689999999999999853210 0
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..............+.+++.+|+|+|+.+++++++. .+++|+++.+|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~G~~~~v~~ 249 (251)
T PRK06924 202 KEDFTNLDRFITLKEEGKLLSPEYVAKALRNLLETE-DFPNGEVIDIDE 249 (251)
T ss_pred cccchHHHHHHHHhhcCCcCCHHHHHHHHHHHHhcc-cCCCCCEeehhh
Confidence 011111112222334567899999999999999884 578999998875
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=247.65 Aligned_cols=243 Identities=20% Similarity=0.234 Sum_probs=194.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|++|||||++|||.+++++|+++|+ +|++++|+. +..+...+.++..+.++.++.+|+++++++.++++++.+.+++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999995 888888764 4444555555444567899999999999999999999999999
Q ss_pred ccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCC----CceEEEEeccccccCCCCCCCC
Q 015844 165 LDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP----SKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 165 id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~----~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+|++|||||.... ..++.+.+.++|++.+++|+.+++++++.+.+.|.++..+ .++||++||..+..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 152 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM-------- 152 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc--------
Confidence 9999999998532 2356677889999999999999999999999999875421 35799999988764
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|+.||++++.+++.++.++ .+.||++++|+||.+.|++... ...
T Consensus 153 ---------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~~~-~~~ 203 (256)
T PRK12745 153 ---------------------------VSPNRGEYCISKAGLSMAAQLFAARL-AEEGIGVYEVRPGLIKTDMTAP-VTA 203 (256)
T ss_pred ---------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEecCCCcCccccc-cch
Confidence 23456689999999999999999998 5669999999999999975422 111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....... ....+..++.+|+|+++.+.+++++...+.+|.++.+||.
T Consensus 204 ~~~~~~~-~~~~~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg 250 (256)
T PRK12745 204 KYDALIA-KGLVPMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGG 250 (256)
T ss_pred hHHhhhh-hcCCCcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCC
Confidence 1111110 0123445678999999999999988777799999999985
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=245.25 Aligned_cols=231 Identities=18% Similarity=0.206 Sum_probs=186.0
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
|.+|+++||||++|||++++++|+++| ++|++++|+.... . ...++.+|++|.++++++++++.+.+
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r~~~~~------~-----~~~~~~~D~~~~~~~~~~~~~~~~~~- 67 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGIARSAIDD------F-----PGELFACDLADIEQTAATLAQINEIH- 67 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCcccc------c-----CceEEEeeCCCHHHHHHHHHHHHHhC-
Confidence 357899999999999999999999999 5999999986430 1 12467899999999999999988876
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||.... .++.+.+.++|++++++|+.+++++++.++|.|++.+ .++||++||....
T Consensus 68 ~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~------------- 131 (234)
T PRK07577 68 PVDAIVNNVGIALP-QPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLRE--QGRIVNICSRAIF------------- 131 (234)
T ss_pred CCcEEEECCCCCCC-CChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcccccc-------------
Confidence 58999999998643 4566778999999999999999999999999998765 4799999997532
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.++...|++||++++.|++.++.++ .+.||++++|+||.++|+++..........
T Consensus 132 -----------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~ 187 (234)
T PRK07577 132 -----------------------GALDRTSYSAAKSALVGCTRTWALEL-AEYGITVNAVAPGPIETELFRQTRPVGSEE 187 (234)
T ss_pred -----------------------CCCCchHHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEecCcccCcccccccccchhH
Confidence 12345689999999999999999998 567999999999999998653321111011
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+..+..+|+|+|..++++++++..+++|+++.+||.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~ 231 (234)
T PRK07577 188 EKRVLASIPMRRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDGG 231 (234)
T ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHHhCcccCCccceEEEecCC
Confidence 11122233445567999999999999998877899999999884
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=250.16 Aligned_cols=228 Identities=20% Similarity=0.214 Sum_probs=182.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCc-EEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN-YTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.+ +.++.+|++|+++++++++++.+.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4799999999999999999999996 8999999988777776666544443 4567899999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||.. ....+.+.+.++|+.++++|+.|++++++.++|.|.+.+. .|+||++||..+..
T Consensus 80 d~lv~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~~-------------- 143 (272)
T PRK07832 80 DVVMNIAGIS-AWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGR-GGHLVNVSSAAGLV-------------- 143 (272)
T ss_pred CEEEECCCCC-CCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEccccccC--------------
Confidence 9999999986 3456678899999999999999999999999999976532 47999999987653
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh---hh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL---FR 322 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~---~~ 322 (399)
+.++...|++||+++.+|++.++.++ .+.||+|++|+||.++|+++....... ..
T Consensus 144 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 201 (272)
T PRK07832 144 ---------------------ALPWHAAYSASKFGLRGLSEVLRFDL-ARHGIGVSVVVPGAVKTPLVNTVEIAGVDRED 201 (272)
T ss_pred ---------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhcccccccCcch
Confidence 33566789999999999999999998 567999999999999998553311000 00
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.....+.....++..+|+|+|+.+++++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 202 PRVQKWVDRFRGHAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred hhHHHHHHhcccCCCCHHHHHHHHHHHHhcC
Confidence 0001111222355789999999999999643
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=244.61 Aligned_cols=232 Identities=22% Similarity=0.213 Sum_probs=193.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCC--CHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLA--SLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs--~~~~v~~~~~~~~ 159 (399)
.+++|+++||||++|||.+++++|++.|+ +|++++|+.+..+...+++...+ .++.++.+|++ ++++++++++.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999995 99999999887777766665433 45677788886 7899999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||......++.+.+.++|++.+++|+.+++++++++++.|.+++ .++||++||..+..
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~--~~~iv~~ss~~~~~-------- 157 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSP--AASLVFTSSSVGRQ-------- 157 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEEccHhhcC--------
Confidence 98999999999999865555666778899999999999999999999999998765 47999999987764
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.+++..|++||++++.+++.++.++ ...||++++|+||.++|++.......
T Consensus 158 ---------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~~~~v~pg~v~t~~~~~~~~~ 209 (247)
T PRK08945 158 ---------------------------GRANWGAYAVSKFATEGMMQVLADEY-QGTNLRVNCINPGGTRTAMRASAFPG 209 (247)
T ss_pred ---------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCCccCcchhhhcCc
Confidence 23456689999999999999999998 55799999999999999742211111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
....++.+|+|+++.++|++++...+++|+++..
T Consensus 210 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 243 (247)
T PRK08945 210 -----------EDPQKLKTPEDIMPLYLYLMGDDSRRKNGQSFDA 243 (247)
T ss_pred -----------ccccCCCCHHHHHHHHHHHhCccccccCCeEEeC
Confidence 0123467999999999999998888899999753
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=250.00 Aligned_cols=233 Identities=18% Similarity=0.139 Sum_probs=186.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|.++++++++.+.+.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 99999999877777777765556678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCC----CceEEEEeccccccCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP----SKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~----~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+++|+||||||.... .++.+.+.++|+.++++|+.|+++++++++|.|.+.... .|+||++||.++..
T Consensus 82 g~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------- 153 (287)
T PRK06194 82 GAVHLLFNNAGVGAG-GLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL------- 153 (287)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc-------
Confidence 999999999999643 556677899999999999999999999999999876521 16999999988874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-CCceEEEEeeCCcccCCCCcccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||++++.|++.++.++.. ..+|++++|+||+|.|++.....
T Consensus 154 ----------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~ 205 (287)
T PRK06194 154 ----------------------------APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSER 205 (287)
T ss_pred ----------------------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccccc
Confidence 2345678999999999999999999842 35799999999999997543211
Q ss_pred c-hhh-----------hhhchhhHHHHhcCCCChHHHHHHHHHhhcC
Q 015844 318 I-PLF-----------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 318 ~-~~~-----------~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~ 352 (399)
. +.. ................+++|+|+.++.++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dva~~i~~~~~~ 252 (287)
T PRK06194 206 NRPADLANTAPPTRSQLIAQAMSQKAVGSGKVTAEEVAQLVFDAIRA 252 (287)
T ss_pred cCchhcccCccccchhhHHHHHHHhhhhccCCCHHHHHHHHHHHHHc
Confidence 0 100 0000111111122347999999999998754
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=248.75 Aligned_cols=227 Identities=20% Similarity=0.229 Sum_probs=183.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+|++|||||+||||++++++|+++|+ +|++++|+.+..+.+.+. .+.++.++.+|++|++++.++++.+.+.+++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEAL---HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhh---cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999995 899999998766554432 2346888999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||.. ...++.+.+.++|++++++|+.|++++++.++|+|++.+ .++||++||.++..
T Consensus 79 ~d~vv~~ag~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~iSS~~~~~------------- 142 (277)
T PRK06180 79 IDVLVNNAGYG-HEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR--RGHIVNITSMGGLI------------- 142 (277)
T ss_pred CCEEEECCCcc-CCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CCEEEEEecccccC-------------
Confidence 99999999986 445667888999999999999999999999999998765 47999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc------c
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH------I 318 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~------~ 318 (399)
+.++...|+++|++++.+++.++.++ ...|+++++|+||+++|++..... .
T Consensus 143 ----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~ 199 (277)
T PRK06180 143 ----------------------TMPGIGYYCGSKFALEGISESLAKEV-APFGIHVTAVEPGSFRTDWAGRSMVRTPRSI 199 (277)
T ss_pred ----------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCcccCccccccccCCCCc
Confidence 33567899999999999999999998 567999999999999997432211 1
Q ss_pred hhhhhhchhh----HHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 319 PLFRLLFPPF----QKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 319 ~~~~~~~~~~----~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
+......... ......++.+|+++|+.+++++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~~ 239 (277)
T PRK06180 200 ADYDALFGPIRQAREAKSGKQPGDPAKAAQAILAAVESDE 239 (277)
T ss_pred HhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHcCCC
Confidence 1111111111 11223456799999999999987754
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=267.56 Aligned_cols=238 Identities=21% Similarity=0.202 Sum_probs=191.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..++++++|||||++|||+++|++|+++|+ +|++++|.. +.+++..+++ ...++.||++|.++++++++.+.
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRV-----GGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999996 888888743 3334443333 23578899999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.. ...+.+.+.++|+.++++|+.|++++++.+.+.+.... +++||++||.++..
T Consensus 280 ~~~g~id~vi~~AG~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~g~iv~~SS~~~~~-------- 348 (450)
T PRK08261 280 ERHGGLDIVVHNAGITR-DKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGD--GGRIVGVSSISGIA-------- 348 (450)
T ss_pred HhCCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcC--CCEEEEECChhhcC--------
Confidence 99999999999999874 45677889999999999999999999999999654433 47999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.+++..|+++|++++.|++.++.++ .+.||++|+|+||.++|++.. ....
T Consensus 349 ---------------------------g~~~~~~Y~asKaal~~~~~~la~el-~~~gi~v~~v~PG~i~t~~~~-~~~~ 399 (450)
T PRK08261 349 ---------------------------GNRGQTNYAASKAGVIGLVQALAPLL-AERGITINAVAPGFIETQMTA-AIPF 399 (450)
T ss_pred ---------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeCcCcchhhh-ccch
Confidence 23567789999999999999999998 567999999999999997432 2211
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..+.... ...+..+...|+|+|+.++||+++...++||+.+.+||.
T Consensus 400 ~~~~~~~--~~~~l~~~~~p~dva~~~~~l~s~~~~~itG~~i~v~g~ 445 (450)
T PRK08261 400 ATREAGR--RMNSLQQGGLPVDVAETIAWLASPASGGVTGNVVRVCGQ 445 (450)
T ss_pred hHHHHHh--hcCCcCCCCCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 1111100 112234567899999999999998888999999999984
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=243.37 Aligned_cols=231 Identities=18% Similarity=0.274 Sum_probs=184.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++++||||+||||.++++.|+++|+ +|++++|+.++++.+.+.+ +.++.++.+|++|.++++++++++.+.++++|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 76 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRNID 76 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999999999995 9999999987776665544 34688899999999999999999999889999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
++|||||......++.+.+.++|++++++|+.|++.+++.+++.|.+.+ .++||++||..+..
T Consensus 77 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------------- 139 (248)
T PRK10538 77 VLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGSW--------------- 139 (248)
T ss_pred EEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECCcccCC---------------
Confidence 9999999854334566778999999999999999999999999998764 47999999987653
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
++++...|+.+|++++.+++.++.++ .+.||++++|+||.+.|+++....... ....
T Consensus 140 --------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~i~~~~~~~~~~~~--~~~~ 196 (248)
T PRK10538 140 --------------------PYAGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEFSNVRFKG--DDGK 196 (248)
T ss_pred --------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCCCcEEEEEeCCeecccccchhhccC--cHHH
Confidence 33566789999999999999999998 567999999999999866543211100 0000
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceE
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY 361 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~ 361 (399)
.........+.+|+|+|+.++++++.+..+..+..
T Consensus 197 ~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~ 231 (248)
T PRK10538 197 AEKTYQNTVALTPEDVSEAVWWVATLPAHVNINTL 231 (248)
T ss_pred HHhhccccCCCCHHHHHHHHHHHhcCCCcccchhh
Confidence 00111122457999999999999987766544433
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=243.37 Aligned_cols=236 Identities=22% Similarity=0.240 Sum_probs=190.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++++++||||++|||+++++.|+++|+ +|++++|+.++.++..+.. ...++.+|+++.++++++++. .
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~----~ 75 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGET-----GCEPLRLDVGDDAAIRAALAA----A 75 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCeEEEecCCCHHHHHHHHHH----h
Confidence 57889999999999999999999999995 9999999987766555443 245788999999988887765 4
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||... .....+.+.++|++.+++|+.+++.+++++.+.+.+.+. .++||++||..+..
T Consensus 76 ~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~----------- 142 (245)
T PRK07060 76 GAFDGLVNCAGIAS-LESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGR-GGSIVNVSSQAALV----------- 142 (245)
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CcEEEEEccHHHcC-----------
Confidence 68999999999863 345556788999999999999999999999999875431 36999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+.+|++++.+++.++.++ .+.||++++|+||.+.|++..... ....
T Consensus 143 ------------------------~~~~~~~y~~sK~a~~~~~~~~a~~~-~~~~i~v~~v~pg~v~~~~~~~~~-~~~~ 196 (245)
T PRK07060 143 ------------------------GLPDHLAYCASKAALDAITRVLCVEL-GPHGIRVNSVNPTVTLTPMAAEAW-SDPQ 196 (245)
T ss_pred ------------------------CCCCCcHhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEeeCCCCCchhhhhc-cCHH
Confidence 23456789999999999999999998 566999999999999998532211 1111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++++++++...++|+++.+||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK07060 197 KSGPMLAAIPLGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDGG 241 (245)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCcEEeECCC
Confidence 122233344556789999999999999999888899999999884
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=242.74 Aligned_cols=245 Identities=19% Similarity=0.189 Sum_probs=201.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||+|+||.+++++|+++|+ +|++++|+.++.....+.+...+.++.++.+|++|.++++++++++.+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999995 99999999877777777666556678999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||+|.... .++.+.+.+++++.+++|+.+++.+++.+++.|.+.+ .++||++||..+..
T Consensus 82 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~ss~~~~~----------- 147 (251)
T PRK12826 82 GRLDILVANAGIFPL-TPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG--GGRIVLTSSVAGPR----------- 147 (251)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEechHhhc-----------
Confidence 999999999998643 5566778999999999999999999999999998765 46999999987651
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.+.++...|+.+|++++.+++.++.++ ...|+++++|+||.+.|++....... .
T Consensus 148 -----------------------~~~~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~~~~--~ 201 (251)
T PRK12826 148 -----------------------VGYPGLAHYAASKAGLVGFTRALALEL-AARNITVNSVHPGGVDTPMAGNLGDA--Q 201 (251)
T ss_pred -----------------------cCCCCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCCCCcchhhhcCch--H
Confidence 123456789999999999999999998 55699999999999999854322111 0
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.........+.+++.+++|+|+.+.+++..+..+++|+.+.++|..
T Consensus 202 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 202 WAEAIAAAIPLGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 0111122334456789999999999999887778899999998853
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=248.48 Aligned_cols=223 Identities=22% Similarity=0.258 Sum_probs=177.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC-CC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-RP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~ 164 (399)
+|++|||||+||||+++|+.|+++|+ +|++++|+.+.++++.+ ..+.++.+|++|.++++++++++.+.+ ++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEA------EGLEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH------CCceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999995 99999999877655432 246788999999999999999987765 68
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+.. ...+.+.+.++++.++++|+.|++.+++.++|.|.+.+ .|+||++||..+..
T Consensus 77 id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~------------- 140 (277)
T PRK05993 77 LDALFNNGAYGQ-PGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG--QGRIVQCSSILGLV------------- 140 (277)
T ss_pred ccEEEECCCcCC-CCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC--CCEEEEECChhhcC-------------
Confidence 999999999864 45667789999999999999999999999999998765 47999999987763
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh--
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR-- 322 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~-- 322 (399)
+.++...|++||++++.|+++++.|+ .+.||+|++|+||+|+|++..+.......
T Consensus 141 ----------------------~~~~~~~Y~asK~a~~~~~~~l~~el-~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~ 197 (277)
T PRK05993 141 ----------------------PMKYRGAYNASKFAIEGLSLTLRMEL-QGSGIHVSLIEPGPIETRFRANALAAFKRWI 197 (277)
T ss_pred ----------------------CCCccchHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCCccCchhhHHHHHHhhhh
Confidence 33566789999999999999999999 67799999999999999854321111000
Q ss_pred ---------hhchh---hHH-H-HhcCCCChHHHHHHHHHhhcCCC
Q 015844 323 ---------LLFPP---FQK-Y-ITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 323 ---------~~~~~---~~~-~-~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
..... +.. . ......+||++|+.++..+....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~i~~a~~~~~ 243 (277)
T PRK05993 198 DIENSVHRAAYQQQMARLEGGGSKSRFKLGPEAVYAVLLHALTAPR 243 (277)
T ss_pred ccccchhHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHcCCC
Confidence 00000 000 0 11224689999999999987654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=242.14 Aligned_cols=225 Identities=18% Similarity=0.258 Sum_probs=177.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++||||++|||+++|+.|+++|. ..|++..|+.... ..+.++.+++||+++.++++++. +.++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~Dls~~~~~~~~~----~~~~~i 68 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD--------FQHDNVQWHALDVTDEAEIKQLS----EQFTQL 68 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc--------cccCceEEEEecCCCHHHHHHHH----HhcCCC
Confidence 4799999999999999999999852 2566666654221 12357888999999999988754 446789
Q ss_pred cEEEecCcccCC-----CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 166 DVLVCNAAVYLP-----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 166 d~lv~nAg~~~~-----~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
|+||||||+... ...+.+.+.+.|++.+++|+.+++.+++.++|.|++++ .++|+++||..+....
T Consensus 69 d~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~~~i~~iss~~~~~~~------- 139 (235)
T PRK09009 69 DWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE--SAKFAVISAKVGSISD------- 139 (235)
T ss_pred CEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC--CceEEEEeeccccccc-------
Confidence 999999998742 23456778899999999999999999999999998764 4699999986654210
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-CCceEEEEeeCCcccCCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
.+.+++..|+++|++++.|++.|+.|+.. ..+|+|++|+||+|+|++... .
T Consensus 140 -------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~-~-- 191 (235)
T PRK09009 140 -------------------------NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP-F-- 191 (235)
T ss_pred -------------------------CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc-h--
Confidence 12356678999999999999999999842 159999999999999985421 1
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
....+.+++.+|||+|+.+++++++...+.+|+++.+||..
T Consensus 192 --------~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~ 232 (235)
T PRK09009 192 --------QQNVPKGKLFTPEYVAQCLLGIIANATPAQSGSFLAYDGET 232 (235)
T ss_pred --------hhccccCCCCCHHHHHHHHHHHHHcCChhhCCcEEeeCCcC
Confidence 11223455789999999999999998888999999999864
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-31 Score=242.72 Aligned_cols=221 Identities=24% Similarity=0.258 Sum_probs=184.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||++|||.+++++|+++|+ +|++++|+.+..++...++ ..+.++.++.+|++|.++++++++.+.+ +
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~-~ 78 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARARE-M 78 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHh-c
Confidence 56789999999999999999999999995 9999999988877777666 3356788999999999999999998876 7
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||.. ...++.+.+.+++++++++|+.|++++++.++++|.+.+ .++||++||..+..
T Consensus 79 ~~id~lv~~ag~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 144 (263)
T PRK09072 79 GGINVLINNAGVN-HFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQP--SAMVVNVGSTFGSI----------- 144 (263)
T ss_pred CCCCEEEECCCCC-CccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEecChhhCc-----------
Confidence 8999999999986 345666788999999999999999999999999998764 47999999987764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+.+|+++..+++.++.++ .+.||+|++|+||+++|++.......
T Consensus 145 ------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~~~t~~~~~~~~~--- 196 (263)
T PRK09072 145 ------------------------GYPGYASYCASKFALRGFSEALRREL-ADTGVRVLYLAPRATRTAMNSEAVQA--- 196 (263)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccccchhhhccc---
Confidence 23456789999999999999999998 56799999999999999743211100
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.......+..+|+++|+.+++++...
T Consensus 197 -----~~~~~~~~~~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 197 -----LNRALGNAMDDPEDVAAAVLQAIEKE 222 (263)
T ss_pred -----ccccccCCCCCHHHHHHHHHHHHhCC
Confidence 00111234679999999999999865
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=238.19 Aligned_cols=242 Identities=22% Similarity=0.234 Sum_probs=195.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|++|||||+|+||.+++++|+++|+ +|+++.|+.. ..+...+++...+.++.++.+|+++.+++.++++++.+.
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999995 7877766543 345555555555678899999999999999999999998
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||.... ....+.+.+++++++++|+.+++++++.+.+.+.+.+ .++||++||..+..
T Consensus 81 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~iss~~~~~---------- 147 (248)
T PRK05557 81 FGGVDILVNNAGITRD-NLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQR--SGRIINISSVVGLM---------- 147 (248)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEEcccccCc----------
Confidence 8999999999998643 4555678899999999999999999999999987754 36899999987664
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+.+|++++.+++.++.++ ...||++++|+||+++|++... ..+.
T Consensus 148 -------------------------~~~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~v~pg~~~~~~~~~-~~~~- 199 (248)
T PRK05557 148 -------------------------GNPGQANYAASKAGVIGFTKSLAREL-ASRGITVNAVAPGFIETDMTDA-LPED- 199 (248)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCccCCccccc-cChH-
Confidence 22456789999999999999999998 5669999999999999874322 2111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+++++++.+.+++.+....++|+.+.+||.
T Consensus 200 -~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 200 -VKEAILAQIPLGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred -HHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 111112223345578999999999999988777899999999874
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=241.55 Aligned_cols=217 Identities=14% Similarity=0.136 Sum_probs=174.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-HHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++|||||++|||+++|++|+++|..+|++++|+.+. .+++.+++...+ .+++++.||++|.++++++++++.+ .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~-~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA-G 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-c
Confidence 467999999999999999999999953499999998775 777777765544 3789999999999999999999886 4
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||+|+....... ..+.++..+++++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 86 g~id~li~~ag~~~~~~~~-~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~--~~~iv~isS~~g~~----------- 151 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEEL-WQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG--FGQIIAMSSVAGER----------- 151 (253)
T ss_pred CCCCEEEEeeecCCchhhc-ccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC--CceEEEEechhhcC-----------
Confidence 8999999999986332111 123445567899999999999999999999875 47999999987753
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+++.+|++.++.|+ .+.||+|++|+||+++|++..... .
T Consensus 152 ------------------------~~~~~~~Y~~sKaa~~~~~~~l~~el-~~~~i~v~~v~Pg~v~t~~~~~~~-~--- 202 (253)
T PRK07904 152 ------------------------VRRSNFVYGSTKAGLDGFYLGLGEAL-REYGVRVLVVRPGQVRTRMSAHAK-E--- 202 (253)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeeCceecchhccCC-C---
Confidence 22345679999999999999999998 567999999999999998543211 0
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.....+|+++|+.++..+.+...
T Consensus 203 ----------~~~~~~~~~~A~~i~~~~~~~~~ 225 (253)
T PRK07904 203 ----------APLTVDKEDVAKLAVTAVAKGKE 225 (253)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHcCCC
Confidence 01246999999999999876533
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-32 Score=224.90 Aligned_cols=239 Identities=21% Similarity=0.223 Sum_probs=197.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
..+|-+.|||||.+|+|++.|++|+++|| .|++.+-...+.++..+++ |+++.+..+|+++++++..++...+.+|
T Consensus 6 s~kglvalvtggasglg~ataerlakqga-sv~lldlp~skg~~vakel---g~~~vf~padvtsekdv~aala~ak~kf 81 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGA-SVALLDLPQSKGADVAKEL---GGKVVFTPADVTSEKDVRAALAKAKAKF 81 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCc-eEEEEeCCcccchHHHHHh---CCceEEeccccCcHHHHHHHHHHHHhhc
Confidence 35678999999999999999999999997 8999988777777777776 6789999999999999999999999999
Q ss_pred CCccEEEecCcccCCCC-----CCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC----CCceEEEEeccccccCC
Q 015844 163 RPLDVLVCNAAVYLPTA-----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITGNTNT 233 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~-----~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~----~~g~iV~vSS~~~~~~~ 233 (399)
|++|.+|||||+....+ .-...+.|+|++++++|++|+|++++.....|-+... ..|-|||+.|++++-
T Consensus 82 grld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd-- 159 (260)
T KOG1199|consen 82 GRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD-- 159 (260)
T ss_pred cceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec--
Confidence 99999999999864221 1124578999999999999999999999888865421 247899999998873
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+..++.+|++||.++.+++--+++.+ +..|||+++|.||.++||++
T Consensus 160 ---------------------------------gq~gqaaysaskgaivgmtlpiardl-a~~gir~~tiapglf~tpll 205 (260)
T KOG1199|consen 160 ---------------------------------GQTGQAAYSASKGAIVGMTLPIARDL-AGDGIRFNTIAPGLFDTPLL 205 (260)
T ss_pred ---------------------------------CccchhhhhcccCceEeeechhhhhc-ccCceEEEeecccccCChhh
Confidence 45789999999999999999999999 67799999999999999965
Q ss_pred ccccchhhhhhchhhHH--HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 314 FREHIPLFRLLFPPFQK--YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~--~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. .+.. ....+.+ ....|+..|.|.+..+-..+.++ +.+|..|..||-
T Consensus 206 ss-lpek---v~~fla~~ipfpsrlg~p~eyahlvqaiienp--~lngevir~dga 255 (260)
T KOG1199|consen 206 SS-LPEK---VKSFLAQLIPFPSRLGHPHEYAHLVQAIIENP--YLNGEVIRFDGA 255 (260)
T ss_pred hh-hhHH---HHHHHHHhCCCchhcCChHHHHHHHHHHHhCc--ccCCeEEEecce
Confidence 33 2211 1111111 12467899999999998888776 789999999983
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=241.28 Aligned_cols=231 Identities=22% Similarity=0.260 Sum_probs=184.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||++|||++++++|+++|+ +|++++|+.+..++..+.+...+.++.++.+|+++++++.++++++.+.+
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999995 89999998777666666665556678899999999999999999998888
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||... .....+.+.+++++++++|+.+++++++.+++.+.+++ .|+||++||..+..
T Consensus 86 ~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~--~g~iv~isS~~~~~----------- 151 (274)
T PRK07775 86 GEIEVLVSGAGDTY-FGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR--RGDLIFVGSDVALR----------- 151 (274)
T ss_pred CCCCEEEECCCcCC-CcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CceEEEECChHhcC-----------
Confidence 99999999999863 34555678899999999999999999999999987654 47999999987663
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+.+|++++.+++.++.++ ...||++++|+||.++|++..........
T Consensus 152 ------------------------~~~~~~~Y~~sK~a~~~l~~~~~~~~-~~~gi~v~~v~pG~~~t~~~~~~~~~~~~ 206 (274)
T PRK07775 152 ------------------------QRPHMGAYGAAKAGLEAMVTNLQMEL-EGTGVRASIVHPGPTLTGMGWSLPAEVIG 206 (274)
T ss_pred ------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCCcccCcccccCChhhhh
Confidence 23456689999999999999999998 56699999999999998743221111000
Q ss_pred hhchhhHH---HHhcCCCChHHHHHHHHHhhcCC
Q 015844 323 LLFPPFQK---YITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 323 ~~~~~~~~---~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
........ ....++..++|+|++++++++.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 207 PMLEDWAKWGQARHDYFLRASDLARAITFVAETP 240 (274)
T ss_pred HHHHHHHHhcccccccccCHHHHHHHHHHHhcCC
Confidence 01111111 11234789999999999999865
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=237.02 Aligned_cols=242 Identities=19% Similarity=0.225 Sum_probs=195.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|++|||||+|+||.+++++|+++|+ .|++..|+ ....+...+.+...+.++.++.+|++|.++++++++++.+.
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999995 77665554 44445555555545667889999999999999999999888
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|++|||||.. ....+.+.+.++|++.+++|+.+++++++.+.+++.+.+ .+++|++||..+..
T Consensus 82 ~~~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~i~~SS~~~~~---------- 148 (249)
T PRK12825 82 FGRIDILVNNAGIF-EDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR--GGRIVNISSVAGLP---------- 148 (249)
T ss_pred cCCCCEEEECCccC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECccccCC----------
Confidence 88999999999975 445566778999999999999999999999999998765 46999999988763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+.+|++++.+++.++.++ .+.||++++|+||.+.|++.........
T Consensus 149 -------------------------~~~~~~~y~~sK~~~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~~~~~~ 202 (249)
T PRK12825 149 -------------------------GWPGRSNYAAAKAGLVGLTKALAREL-AEYGITVNMVAPGDIDTDMKEATIEEAR 202 (249)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCccCCccccccchhH
Confidence 23456789999999999999999998 5569999999999999986543221111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. .....+..++.+++|+++.+.+++++...+.+|++|.+++.
T Consensus 203 ~~---~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g 245 (249)
T PRK12825 203 EA---KDAETPLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGG 245 (249)
T ss_pred Hh---hhccCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence 11 01123445678999999999999988777899999999885
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=242.58 Aligned_cols=222 Identities=22% Similarity=0.209 Sum_probs=179.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++++||||+||||++++++|+++|+ +|++++|+.+..+. ..++.+++||++|+++++++++.+.+.+++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAP--------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc--------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 467999999999999999999999995 89999998654321 135788999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+. ....+.+.+.+++++++++|+.|++++++.++|.|++.+ .++||++||..+..
T Consensus 74 ~d~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~------------- 137 (270)
T PRK06179 74 IDVLVNNAGVG-LAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG--SGRIINISSVLGFL------------- 137 (270)
T ss_pred CCEEEECCCCC-CCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEECCccccC-------------
Confidence 99999999986 345666788999999999999999999999999998765 47999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh----
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL---- 320 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~---- 320 (399)
+.+....|++||++++.+++.++.|+ ++.||++++|+||+++|++........
T Consensus 138 ----------------------~~~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~ 194 (270)
T PRK06179 138 ----------------------PAPYMALYAASKHAVEGYSESLDHEV-RQFGIRVSLVEPAYTKTNFDANAPEPDSPLA 194 (270)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeCCCcccccccccCCCCCcch
Confidence 33556789999999999999999998 567999999999999998543211110
Q ss_pred -hhhhch---hhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 321 -FRLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 321 -~~~~~~---~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
...... .....+..+..+|+++|+.+++++..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~ 232 (270)
T PRK06179 195 EYDRERAVVSKAVAKAVKKADAPEVVADTVVKAALGPW 232 (270)
T ss_pred hhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC
Confidence 000000 0111123456799999999999998754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=236.62 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=185.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++++++||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++++++++++++++.+.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 99999999887777776665556688999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||... ...+.+.+.++|++.+++|+.+++++++.+.+.+.+.+ .++||++||..+..
T Consensus 83 ~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~ss~~~~~----------- 148 (239)
T PRK07666 83 GSIDILINNAGISK-FGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ--SGDIINISSTAGQK----------- 148 (239)
T ss_pred CCccEEEEcCcccc-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEEcchhhcc-----------
Confidence 99999999999863 34555778899999999999999999999999998765 47999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|+.+|+++..+++.++.++ .+.||++++|+||.+.|++........
T Consensus 149 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~-- 201 (239)
T PRK07666 149 ------------------------GAAVTSAYSASKFGVLGLTESLMQEV-RKHNIRVTALTPSTVATDMAVDLGLTD-- 201 (239)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccCcchhhccccc--
Confidence 23456689999999999999999998 567999999999999998433211110
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.....+.+++++|+.++.+++..
T Consensus 202 --------~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 202 --------GNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred --------cCCCCCCCHHHHHHHHHHHHhCC
Confidence 01134679999999999999775
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=238.39 Aligned_cols=240 Identities=15% Similarity=0.179 Sum_probs=188.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++++++|||||++|||++++++|+++|+ +|++..| +..........+...+.++.++.+|+++++++.++++++.+
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999996 7776664 44444444445544456788899999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||.... .++.+.+.+++++.+++|+.+++++++++.+.+.+. ++||++||..+..
T Consensus 81 ~~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~iv~~sS~~~~~--------- 146 (252)
T PRK06077 81 RYGVADILVNNAGLGLF-SPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG----GAIVNIASVAGIR--------- 146 (252)
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC----cEEEEEcchhccC---------
Confidence 99999999999998533 455567888899999999999999999999998763 6999999988763
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.+++.++.++ .+ +|+++.|+||+++|++... ....
T Consensus 147 --------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~v~~v~Pg~i~t~~~~~-~~~~ 197 (252)
T PRK06077 147 --------------------------PAYGLSIYGAMKAAVINLTKYLALEL-AP-KIRVNAIAPGFVKTKLGES-LFKV 197 (252)
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hc-CCEEEEEeeCCccChHHHh-hhhc
Confidence 44677899999999999999999998 45 8999999999999984321 1110
Q ss_pred hhhhchhhH-H-HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQ-K-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~-~-~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......+. . .+.+++++|+|+|+.+++++..+ ..+|..+.+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~--~~~g~~~~i~~g 244 (252)
T PRK06077 198 LGMSEKEFAEKFTLMGKILDPEEVAEFVAAILKIE--SITGQVFVLDSG 244 (252)
T ss_pred ccccHHHHHHhcCcCCCCCCHHHHHHHHHHHhCcc--ccCCCeEEecCC
Confidence 000001111 1 12345789999999999999754 467887777764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=236.15 Aligned_cols=242 Identities=21% Similarity=0.254 Sum_probs=199.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|.++++|||||+++||.++++.|+++|. .|++++|+..+.+.....+...+.++.++.+|++|++++.++++++.+.+
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56778999999999999999999999995 89999999887777777666667788999999999999999999998888
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||+|.... .+..+.+.++++..++.|+.+++++++.+.+.+.+.+ .++||++||..+..
T Consensus 81 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~~~ii~~ss~~~~~----------- 146 (246)
T PRK05653 81 GALDILVNNAGITRD-ALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKAR--YGRIVNISSVSGVT----------- 146 (246)
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECcHHhcc-----------
Confidence 999999999998643 5556778899999999999999999999999987764 36999999987653
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+..+...|+.+|++++.+++.+++++ .+.|+++++|+||.+.+++... .....
T Consensus 147 ------------------------~~~~~~~y~~sk~~~~~~~~~l~~~~-~~~~i~~~~i~pg~~~~~~~~~-~~~~~- 199 (246)
T PRK05653 147 ------------------------GNPGQTNYSAAKAGVIGFTKALALEL-ASRGITVNAVAPGFIDTDMTEG-LPEEV- 199 (246)
T ss_pred ------------------------CCCCCcHhHhHHHHHHHHHHHHHHHH-hhcCeEEEEEEeCCcCCcchhh-hhHHH-
Confidence 22455679999999999999999998 5669999999999999974421 11110
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+.+.+.+++|+++.+.++++......+|.++.++|.
T Consensus 200 -~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 243 (246)
T PRK05653 200 -KAEILKEIPLGRLGQPEEVANAVAFLASDAASYITGQVIPVNGG 243 (246)
T ss_pred -HHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 01111222345678999999999999988777889999999884
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=241.02 Aligned_cols=231 Identities=22% Similarity=0.267 Sum_probs=185.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|++|++|||||+||||.++++.|+++|+ +|++++|+.+..+...+.+... +.++.++.+|++|+++++. ++++.+.
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~ 78 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKE 78 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHh
Confidence 3578999999999999999999999995 9999999987777666555432 3578899999999999999 9999888
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|++|||||... ...+.+.+.+++++.+++|+.+++++++.++|.|++.+ .++||++||..+..
T Consensus 79 ~~~id~vv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~~---------- 145 (280)
T PRK06914 79 IGRIDLLVNNAGYAN-GGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK--SGKIINISSISGRV---------- 145 (280)
T ss_pred cCCeeEEEECCcccc-cCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECcccccC----------
Confidence 899999999999864 34566778899999999999999999999999998764 47999999987764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--- 318 (399)
+.++...|+.+|++++.|+++++.++ .+.||++++|+||.++|+++.....
T Consensus 146 -------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~ 199 (280)
T PRK06914 146 -------------------------GFPGLSPYVSSKYALEGFSESLRLEL-KPFGIDVALIEPGSYNTNIWEVGKQLAE 199 (280)
T ss_pred -------------------------CCCCCchhHHhHHHHHHHHHHHHHHh-hhhCCEEEEEecCCcccchhhccccccc
Confidence 23566789999999999999999998 5679999999999999985432110
Q ss_pred -------hhhhhhchhhH--HHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 319 -------PLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 319 -------~~~~~~~~~~~--~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.....+..... ..+.+++.+|+|+|+.++++++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~ 245 (280)
T PRK06914 200 NQSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVEIAESKRP 245 (280)
T ss_pred cccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHcCCCC
Confidence 00000000000 11234678999999999999988654
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-30 Score=237.97 Aligned_cols=220 Identities=21% Similarity=0.175 Sum_probs=180.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc-CCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~g~i 165 (399)
|++|||||++|||++++++|+++|+ +|++++|+.+..+++.+.+. +.++.+++||++|.+++.++++.+.+. ++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999995 99999999888777766654 457899999999999999999988776 7899
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||... ...+.+.+.+++++++++|+.+++.+++++.+.|++.+ .++||++||..+..
T Consensus 79 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~-------------- 141 (260)
T PRK08267 79 DVLFNNAGILR-GGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP--GARVINTSSASAIY-------------- 141 (260)
T ss_pred CEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEeCchhhCc--------------
Confidence 99999999864 35666788999999999999999999999999998764 47999999988764
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|+.||++++.|++.++.++ .+.||++++|+||+++|++........ ..
T Consensus 142 ---------------------~~~~~~~Y~~sKaa~~~~~~~l~~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~---~~ 196 (260)
T PRK08267 142 ---------------------GQPGLAVYSATKFAVRGLTEALDLEW-RRHGIRVADVMPLFVDTAMLDGTSNEV---DA 196 (260)
T ss_pred ---------------------CCCCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCcCCcccccccchh---hh
Confidence 23456789999999999999999998 567999999999999998543211100 00
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.... ......+|+++|+.+++++...
T Consensus 197 ~~~~--~~~~~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 197 GSTK--RLGVRLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred hhHh--hccCCCCHHHHHHHHHHHHhCC
Confidence 0111 1123578999999999998543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=238.87 Aligned_cols=245 Identities=23% Similarity=0.241 Sum_probs=195.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||+|+||+.++++|+++|+ +|++++|+.+..+...+.... .++.++.+|++|+++++++++++.+.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPG--AKVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999995 899999998766665555432 267889999999999999999999888
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||...........+.++|.+++++|+.+++++++.+++.+...+. +++||++||.++..
T Consensus 85 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~vv~~ss~~~~~----------- 152 (264)
T PRK12829 85 GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGH-GGVIIALSSVAGRL----------- 152 (264)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CeEEEEeccccccc-----------
Confidence 999999999998744455667788999999999999999999999998876542 25789988877653
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch---
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--- 319 (399)
+.++...|+.+|++++.+++.++.++ +..++++++|+||++.|++.......
T Consensus 153 ------------------------~~~~~~~y~~~K~a~~~~~~~l~~~~-~~~~i~~~~l~pg~v~~~~~~~~~~~~~~ 207 (264)
T PRK12829 153 ------------------------GYPGRTPYAASKWAVVGLVKSLAIEL-GPLGIRVNAILPGIVRGPRMRRVIEARAQ 207 (264)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcCChHHHHHhhhhhh
Confidence 33456689999999999999999998 55699999999999999854221110
Q ss_pred -----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+++++|+.+.+++++.....+|+++.+++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g 260 (264)
T PRK12829 208 QLGIGLDEMEQEYLEKISLGRMVEPEDIAATALFLASPAARYITGQAISVDGN 260 (264)
T ss_pred ccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCC
Confidence 000011112223344688999999999999987666789999998884
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=265.87 Aligned_cols=246 Identities=20% Similarity=0.222 Sum_probs=202.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+.+|++|||||+||||++++++|+++|+ +|++++|+.+..+...+.+... .++.++.||++|+++++++++++.+.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999996 9999999988877777666543 57889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|++|+||||||+. ...++.+.+.++|+.++++|+.|++.+++.+.+.|++++. +|+||++||..+..
T Consensus 496 ~g~iDvvI~~AG~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~g~iV~vsS~~~~~---------- 563 (681)
T PRK08324 496 FGGVDIVVSNAGIA-ISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGL-GGSIVFIASKNAVN---------- 563 (681)
T ss_pred cCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CcEEEEECCccccC----------
Confidence 99999999999986 4456778899999999999999999999999999987642 37999999988764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc--cCCCCccccch
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI--ATTGLFREHIP 319 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v--~T~~~~~~~~~ 319 (399)
+.++...|++||++++.+++.++.++ .+.||+||+|+||.| .|.++......
T Consensus 564 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~Pg~v~~~t~~~~~~~~~ 617 (681)
T PRK08324 564 -------------------------PGPNFGAYGAAKAAELHLVRQLALEL-GPDGIRVNGVNPDAVVRGSGIWTGEWIE 617 (681)
T ss_pred -------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCceeecCCccccchhhh
Confidence 23567799999999999999999998 567999999999999 77644322111
Q ss_pred hh--------hhh-chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LF--------RLL-FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~--------~~~-~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ..+ .......+.++++.++|+|+++++++++.....+|+.+.+||.
T Consensus 618 ~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG 674 (681)
T PRK08324 618 ARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGG 674 (681)
T ss_pred hhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 00 000 0112233456678999999999999987666789999999985
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=234.41 Aligned_cols=214 Identities=21% Similarity=0.245 Sum_probs=179.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+|+++||||++|||++++++|+++|+ +|++.+|+.+..++....+... +.++.++.+|++|.+++.++++++.+.++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 67999999999999999999999995 9999999988777766655432 55789999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|++|||||+.. ...+.+.+.+.+++++++|+.+++.+++.+++.+++.+ .++||++||..+..+
T Consensus 81 ~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~----------- 146 (248)
T PRK08251 81 GLDRVIVNAGIGK-GARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG--SGHLVLISSVSAVRG----------- 146 (248)
T ss_pred CCCEEEECCCcCC-CCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEeccccccC-----------
Confidence 9999999999863 34555677889999999999999999999999998765 469999999887642
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCC-hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.+ ....|+.||++++.+++.++.++ ...||++++|+||+++|++......
T Consensus 147 ------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~~~~---- 197 (248)
T PRK08251 147 ------------------------LPGVKAAYAASKAGVASLGEGLRAEL-AKTPIKVSTIEPGYIRSEMNAKAKS---- 197 (248)
T ss_pred ------------------------CCCCcccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcCcchhhhcccc----
Confidence 12 35689999999999999999998 5679999999999999985432111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.....+|+++|+.++..+...
T Consensus 198 ----------~~~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 198 ----------TPFMVDTETGVKALVKAIEKE 218 (248)
T ss_pred ----------CCccCCHHHHHHHHHHHHhcC
Confidence 012568999999999888653
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=235.09 Aligned_cols=240 Identities=21% Similarity=0.196 Sum_probs=183.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|+++||||+||||+++++.|+++|+ +|++++|+. ...+....+++..+.++.++.+|++|++++.++++++.+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999994 899888875 3445555555544567889999999999999999999988
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|++|||||.... ...+++..+++|+.+++++++.+.+.|.+ .++||++||..+....
T Consensus 82 ~~~~d~vi~~ag~~~~-------~~~~~~~~~~vn~~~~~~l~~~~~~~~~~----~~~iv~isS~~~~~~~-------- 142 (248)
T PRK07806 82 FGGLDALVLNASGGME-------SGMDEDYAMRLNRDAQRNLARAALPLMPA----GSRVVFVTSHQAHFIP-------- 142 (248)
T ss_pred CCCCcEEEECCCCCCC-------CCCCcceeeEeeeHHHHHHHHHHHhhccC----CceEEEEeCchhhcCc--------
Confidence 8999999999986421 11235678999999999999999998864 3699999996543100
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
...+.+.+..|+.||++++.+++.++.++ +..||+|++|+||++.|+..........
T Consensus 143 ----------------------~~~~~~~~~~Y~~sK~a~e~~~~~l~~~~-~~~~i~v~~v~pg~~~~~~~~~~~~~~~ 199 (248)
T PRK07806 143 ----------------------TVKTMPEYEPVARSKRAGEDALRALRPEL-AEKGIGFVVVSGDMIEGTVTATLLNRLN 199 (248)
T ss_pred ----------------------cccCCccccHHHHHHHHHHHHHHHHHHHh-hccCeEEEEeCCccccCchhhhhhccCC
Confidence 00122346689999999999999999998 6679999999999999874321000000
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.... .....+.+++++|+|+|+.++++++.. +.+|+.+.++|..
T Consensus 200 ~~~~-~~~~~~~~~~~~~~dva~~~~~l~~~~--~~~g~~~~i~~~~ 243 (248)
T PRK07806 200 PGAI-EARREAAGKLYTVSEFAAEVARAVTAP--VPSGHIEYVGGAD 243 (248)
T ss_pred HHHH-HHHHhhhcccCCHHHHHHHHHHHhhcc--ccCccEEEecCcc
Confidence 0000 112345567899999999999999843 6799998888853
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=231.61 Aligned_cols=233 Identities=22% Similarity=0.230 Sum_probs=193.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|++|||||+|+||.+++++|+++|+ +|++++|+..+..+..+++... .+.++.+|++|.++++++++++.+.
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPAD--ALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhc--CceEEEeecCCHHHHHHHHHHHHHH
Confidence 357789999999999999999999999995 8999999887666555555432 3567789999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+|||++|... ...+.+.+.+++++.+++|+.+++.+++++.+.+.+++ .++||++||..+..
T Consensus 80 ~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 146 (239)
T PRK12828 80 FGRLDALVNIAGAFV-WGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG--GGRIVNIGAGAALK---------- 146 (239)
T ss_pred hCCcCEEEECCcccC-cCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC--CCEEEEECchHhcc----------
Confidence 999999999999863 34555678899999999999999999999999988765 47999999987763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+.+|++++.+++.++.++ .+.||++++|+||++.|++..... +.
T Consensus 147 -------------------------~~~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~i~pg~v~~~~~~~~~-~~- 198 (239)
T PRK12828 147 -------------------------AGPGMGAYAAAKAGVARLTEALAAEL-LDRGITVNAVLPSIIDTPPNRADM-PD- 198 (239)
T ss_pred -------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCcchhhcC-Cc-
Confidence 23456789999999999999999998 556999999999999997432211 10
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.....+++++|+|+.+++++++...+.+|+++.++|.
T Consensus 199 ---------~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~ 235 (239)
T PRK12828 199 ---------ADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDGG 235 (239)
T ss_pred ---------hhhhcCCCHHHHHHHHHHHhCcccccccceEEEecCC
Confidence 0123367899999999999998777789999999884
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=237.32 Aligned_cols=221 Identities=22% Similarity=0.228 Sum_probs=175.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||+||||++++++|+++|+ +|++++|+.+..+.... ..+.++.+|+++.++++++++.+.+.++++|
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA------AGFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH------CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999995 99999999766554432 1367889999999999999999999899999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||.. ...++.+.+.++|++.+++|+.|++++++.++|.|.+. .|+||++||..+..
T Consensus 75 ~vi~~ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~--------------- 135 (274)
T PRK05693 75 VLINNAGYG-AMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS---RGLVVNIGSVSGVL--------------- 135 (274)
T ss_pred EEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCEEEEECCccccC---------------
Confidence 999999986 34566678899999999999999999999999999764 37999999988764
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh----
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR---- 322 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~---- 322 (399)
+.+....|++||++++.++++++.|+ ++.||+|++|+||+|+|++..........
T Consensus 136 --------------------~~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~ 194 (274)
T PRK05693 136 --------------------VTPFAGAYCASKAAVHALSDALRLEL-APFGVQVMEVQPGAIASQFASNASREAEQLLAE 194 (274)
T ss_pred --------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCccccccccccccchhhcCCC
Confidence 23456689999999999999999998 56799999999999999854321110000
Q ss_pred --h---hchhhH---HHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 323 --L---LFPPFQ---KYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 323 --~---~~~~~~---~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
. ....+. ........+|+++|+.++..+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~ 234 (274)
T PRK05693 195 QSPWWPLREHIQARARASQDNPTPAAEFARQLLAAVQQSP 234 (274)
T ss_pred CCccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCC
Confidence 0 000011 1111234689999999999886543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=234.10 Aligned_cols=242 Identities=23% Similarity=0.232 Sum_probs=194.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||+|+||++++++|+++|+ +|++++|+.+..+.+.+++...+.++.++.+|++|.++++.+++++.+.++++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999995 99999999877777776665555678899999999999999999999888899
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||.... ....+.+.+++++++++|+.|++.+++.+++.|++.+ .++||++||..+..
T Consensus 80 d~vi~~a~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~~-------------- 142 (255)
T TIGR01963 80 DILVNNAGIQHV-APIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG--WGRIINIASAHGLV-------------- 142 (255)
T ss_pred CEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEEcchhhcC--------------
Confidence 999999998643 4445668889999999999999999999999987764 46999999987653
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh---
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR--- 322 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~--- 322 (399)
+.+....|+.+|++++.+++.++.++ ...+|+++.|+||.+.|++..+.......
T Consensus 143 ---------------------~~~~~~~y~~sk~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~ 200 (255)
T TIGR01963 143 ---------------------ASPFKSAYVAAKHGLIGLTKVLALEV-AAHGITVNAICPGYVRTPLVEKQIADQAKTRG 200 (255)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHHHHHHHhhhcccC
Confidence 23456789999999999999999987 55699999999999999853221111000
Q ss_pred -----hhchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 -----LLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 -----~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.....+. ..+.+.+++++|+|+.++++++++....+|+++.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g 251 (255)
T TIGR01963 201 IPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGG 251 (255)
T ss_pred CCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcCc
Confidence 0000011 11224578999999999999988666679999998874
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=233.49 Aligned_cols=241 Identities=25% Similarity=0.289 Sum_probs=184.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH--HHHHHHHhccCC-CcEEEEEecCCC-HHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAK-ENYTIMHLDLAS-LDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~Dvs~-~~~v~~~~~~~ 158 (399)
.+.+|+++||||++|||+++|+.|+++|+ +|+++.|+.+. .+...+.....+ ..+.+..+|+++ .++++.+++.+
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGA-RVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999995 87777776443 333333332122 367888899998 99999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.+|++|++|||||+.....++.+.+.++|++++++|+.|++.+++.+.|.+++ . +||++||..+. ..
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~----~-~Iv~isS~~~~-~~----- 149 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKK----Q-RIVNISSVAGL-GG----- 149 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhh----C-eEEEECCchhc-CC-----
Confidence 9999999999999999743246778899999999999999999999988888873 2 99999999875 22
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCh-hhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
++ ...|++||+|+++|++.++.|+ .+.||++++|+||.++|++.....
T Consensus 150 ------------------------------~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~PG~~~t~~~~~~~ 198 (251)
T COG1028 150 ------------------------------PPGQAAYAASKAALIGLTKALALEL-APRGIRVNAVAPGYIDTPMTAALE 198 (251)
T ss_pred ------------------------------CCCcchHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeccCCCcchhhhh
Confidence 22 5799999999999999999888 667999999999999998554322
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNK 366 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg 366 (399)
..............+..+...|++++..+.++.+.. ..+.+|..+..||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 248 (251)
T COG1028 199 SAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAASYITGQTLPVDG 248 (251)
T ss_pred hhhhhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcchhccccCCEEEeCC
Confidence 111000000000113336778999999999887664 4457777766555
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=234.85 Aligned_cols=223 Identities=22% Similarity=0.285 Sum_probs=182.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++|||||+||||.++++.|+++|+ +|++++|+..+.+...+.+...+.++.++.+|++|.++++++++++.++++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999995 99999999877777777666556688899999999999999999999989999
Q ss_pred cEEEecCcccCCCCCCCCC-ChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 166 DVLVCNAAVYLPTAKEPTF-TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
|+||||||... ...+.+. +.+++++.+++|+.+++++++.+.+.|.+. .++||++||..+..
T Consensus 80 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~---~~~iv~~sS~~~~~------------- 142 (263)
T PRK06181 80 DILVNNAGITM-WSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS---RGQIVVVSSLAGLT------------- 142 (263)
T ss_pred CEEEECCCccc-ccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc---CCEEEEEecccccC-------------
Confidence 99999999863 3455566 889999999999999999999999998765 36999999987763
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
+.++...|+.+|++++.+++.++.++ .+.+|++++|+||.+.|++..........
T Consensus 143 ----------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~~~~~~~~-- 197 (263)
T PRK06181 143 ----------------------GVPTRSGYAASKHALHGFFDSLRIEL-ADDGVAVTVVCPGFVATDIRKRALDGDGK-- 197 (263)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCceEEEEecCccccCcchhhcccccc--
Confidence 33566789999999999999999998 56799999999999999854321111000
Q ss_pred chhhHHHH--hcCCCChHHHHHHHHHhhcCC
Q 015844 325 FPPFQKYI--TKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 325 ~~~~~~~~--~~~~~~pee~a~~v~~l~~~~ 353 (399)
.....+ ..++.+|+|+|+.+++++...
T Consensus 198 --~~~~~~~~~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 198 --PLGKSPMQESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred --ccccccccccCCCCHHHHHHHHHHHhhCC
Confidence 000111 135789999999999999753
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=229.90 Aligned_cols=224 Identities=15% Similarity=0.184 Sum_probs=178.0
Q ss_pred EEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEE
Q 015844 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 169 (399)
Q Consensus 90 lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv 169 (399)
|||||++|||++++++|+++|+ +|++++|+.+..+...+.++ .+.+++++.||++|++++++++++ .+++|+||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~li 74 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-RVTIASRSRDRLAAAARALG-GGAPVRTAALDITDEAAVDAFFAE----AGPFDHVV 74 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHh----cCCCCEEE
Confidence 6999999999999999999995 89999999877776666554 256788999999999999988875 37899999
Q ss_pred ecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccccc
Q 015844 170 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 249 (399)
Q Consensus 170 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 249 (399)
||+|... ..++.+.+.+++++++++|+.+++++++ .+.+.+ .|+||++||..+..
T Consensus 75 ~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~~----~g~iv~~ss~~~~~------------------ 129 (230)
T PRK07041 75 ITAADTP-GGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIAP----GGSLTFVSGFAAVR------------------ 129 (230)
T ss_pred ECCCCCC-CCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhcC----CeEEEEECchhhcC------------------
Confidence 9999864 3556678899999999999999999999 444432 47999999998763
Q ss_pred ccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-h-hhhchh
Q 015844 250 FAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-F-RLLFPP 327 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~-~~~~~~ 327 (399)
+.++...|+++|++++++++.++.++ . +|+|++|+||+++|++... ..+. . ......
T Consensus 130 -----------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~--~irv~~i~pg~~~t~~~~~-~~~~~~~~~~~~~ 188 (230)
T PRK07041 130 -----------------PSASGVLQGAINAALEALARGLALEL-A--PVRVNTVSPGLVDTPLWSK-LAGDAREAMFAAA 188 (230)
T ss_pred -----------------CCCcchHHHHHHHHHHHHHHHHHHHh-h--CceEEEEeecccccHHHHh-hhccchHHHHHHH
Confidence 33567789999999999999999998 3 4999999999999985432 1111 0 111111
Q ss_pred hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 328 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 328 ~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....+.++..+|+|+|+.+++++++ .+.+|+.+.++|.
T Consensus 189 ~~~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~~~v~gg 226 (230)
T PRK07041 189 AERLPARRVGQPEDVANAILFLAAN--GFTTGSTVLVDGG 226 (230)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhcC--CCcCCcEEEeCCC
Confidence 2233445677899999999999985 3689999988874
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=227.76 Aligned_cols=240 Identities=16% Similarity=0.183 Sum_probs=186.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++++|||||+|+||++++++|+++|+ +|++++|+ ....+.....+... +..+.++.+|++|.+++..+++++.+
T Consensus 3 ~~~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (249)
T PRK09135 3 TDSAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVA 81 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999995 89988886 34444444444322 34688899999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||.... .++.+.+.++++.++++|+.|++++++++.+.+.+.. +.+++++|..+.
T Consensus 82 ~~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~~~~~~~~~~~~---------- 147 (249)
T PRK09135 82 AFGRLDALVNNASSFYP-TPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQR---GAIVNITDIHAE---------- 147 (249)
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCC---eEEEEEeChhhc----------
Confidence 99999999999998643 4555667889999999999999999999999987653 688888775443
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+.++...|+.||++++.+++.++.++ .+ +|++++|+||++.|++........
T Consensus 148 -------------------------~~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~~~~v~pg~~~~~~~~~~~~~~ 200 (249)
T PRK09135 148 -------------------------RPLKGYPVYCAAKAALEMLTRSLALEL-AP-EVRVNAVAPGAILWPEDGNSFDEE 200 (249)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHHH-CC-CCeEEEEEeccccCccccccCCHH
Confidence 144667899999999999999999998 33 799999999999998542211111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ........+..+..+++|+++.+.+++.+ ....+|+.+.+++.
T Consensus 201 ~--~~~~~~~~~~~~~~~~~d~a~~~~~~~~~-~~~~~g~~~~i~~g 244 (249)
T PRK09135 201 A--RQAILARTPLKRIGTPEDIAEAVRFLLAD-ASFITGQILAVDGG 244 (249)
T ss_pred H--HHHHHhcCCcCCCcCHHHHHHHHHHHcCc-cccccCcEEEECCC
Confidence 1 11112223344567899999999888875 34579998888774
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=228.87 Aligned_cols=189 Identities=23% Similarity=0.304 Sum_probs=169.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+|.|+|||+-+|+|+.+|++|.+.| ..|+..+-+++.++.+..+.. ..+...++.||+++++|+++.+.+.+..
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~~gae~L~~~~~--s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTEEGAESLRGETK--SPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecCchHHHHhhhhc--CCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999 699999988877777766654 4678888999999999999999888754
Q ss_pred --CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 163 --RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 163 --g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
..+-+||||||+....++.+-++.+++++++++|++|++.+++.++|++++++ |||||+||+.|..
T Consensus 103 ~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar---GRvVnvsS~~GR~--------- 170 (322)
T KOG1610|consen 103 GEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR---GRVVNVSSVLGRV--------- 170 (322)
T ss_pred ccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc---CeEEEecccccCc---------
Confidence 35999999999887777888889999999999999999999999999999985 8999999999985
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.|...+|++||+|++.|+.+|.+|+ .+.||.|.+|.||+.+|+..
T Consensus 171 --------------------------~~p~~g~Y~~SK~aVeaf~D~lR~EL-~~fGV~VsiiePG~f~T~l~ 216 (322)
T KOG1610|consen 171 --------------------------ALPALGPYCVSKFAVEAFSDSLRREL-RPFGVKVSIIEPGFFKTNLA 216 (322)
T ss_pred --------------------------cCcccccchhhHHHHHHHHHHHHHHH-HhcCcEEEEeccCccccccC
Confidence 45677899999999999999999999 68899999999999999744
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=229.92 Aligned_cols=221 Identities=20% Similarity=0.238 Sum_probs=171.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH-HHHcC---
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT-FRRSG--- 162 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~-~~~~~--- 162 (399)
+++|||||+||||++++++|+++|+ +|++++|+.... . ....+.++.++++|++|.+++++++++ +.+.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~-~v~~~~r~~~~~--~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGI-AVLGVARSRHPS--L---AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG 75 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCC-EEEEEecCcchh--h---hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence 3799999999999999999999995 899999876431 1 122345788999999999999998876 54433
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|++|||||......++.+.+.++|++.+++|+.|++.+++.+.+.|.+.+ .++||++||..+..
T Consensus 76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 142 (243)
T PRK07023 76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAA--ERRILHISSGAARN----------- 142 (243)
T ss_pred CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccC--CCEEEEEeChhhcC-----------
Confidence 47999999999865445666788999999999999999999999999998754 47999999987663
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--c-h
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--I-P 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--~-~ 319 (399)
+.+++..|+++|++++.+++.++.+ .+.||++++|+||+++|++..... . .
T Consensus 143 ------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~--~~~~i~v~~v~pg~~~t~~~~~~~~~~~~ 196 (243)
T PRK07023 143 ------------------------AYAGWSVYCATKAALDHHARAVALD--ANRALRIVSLAPGVVDTGMQATIRATDEE 196 (243)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCccccHHHHHHHhcccc
Confidence 4467789999999999999999998 456999999999999998532100 0 0
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHH-HHHhhcC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKR-LAQVVSD 352 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~-v~~l~~~ 352 (399)
............+.+++.+|+|+|.. +.+++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~~~ 230 (243)
T PRK07023 197 RFPMRERFRELKASGALSTPEDAARRLIAYLLSD 230 (243)
T ss_pred cchHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcc
Confidence 00111112223345678899999995 4555544
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=222.61 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=163.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+++||||++|||+++++.|+++ + +|++.+|+.. .++||++|.+++++++++ .+++|+
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~-~vi~~~r~~~-----------------~~~~D~~~~~~~~~~~~~----~~~id~ 58 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-H-EVITAGRSSG-----------------DVQVDITDPASIRALFEK----VGKVDA 58 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-C-cEEEEecCCC-----------------ceEecCCChHHHHHHHHh----cCCCCE
Confidence 6999999999999999999998 5 8999998742 368999999999998875 468999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||||.. ...++.+.+.++|++.+++|+.+++++++.+.|+|.+ .|+|+++||..+..
T Consensus 59 lv~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~iss~~~~~---------------- 117 (199)
T PRK07578 59 VVSAAGKV-HFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND----GGSFTLTSGILSDE---------------- 117 (199)
T ss_pred EEECCCCC-CCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCeEEEEcccccCC----------------
Confidence 99999985 4456667899999999999999999999999999975 36999999988763
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
+.++...|+++|+++++|++.++.|+ +.||+||+|+||+++|++.... .
T Consensus 118 -------------------~~~~~~~Y~~sK~a~~~~~~~la~e~--~~gi~v~~i~Pg~v~t~~~~~~--~-------- 166 (199)
T PRK07578 118 -------------------PIPGGASAATVNGALEGFVKAAALEL--PRGIRINVVSPTVLTESLEKYG--P-------- 166 (199)
T ss_pred -------------------CCCCchHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEcCCcccCchhhhh--h--------
Confidence 34677899999999999999999998 4599999999999999742110 0
Q ss_pred hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 328 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 328 ~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
..+.....+|+|+|+.++++++. ..+|+.|.+
T Consensus 167 --~~~~~~~~~~~~~a~~~~~~~~~---~~~g~~~~~ 198 (199)
T PRK07578 167 --FFPGFEPVPAARVALAYVRSVEG---AQTGEVYKV 198 (199)
T ss_pred --cCCCCCCCCHHHHHHHHHHHhcc---ceeeEEecc
Confidence 01122467999999999999874 478877753
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=227.18 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=175.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|+++||||++|||.+++++|+++|+ +|++++|+.++.+...+.+.. .+.++.+++||++|+++++++++++.+ ++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 77 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPA---LP 77 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhh---cC
Confidence 6899999999999999999999995 999999998777666665533 245789999999999999999998765 47
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||+|.... ..+.+.+.+++.+.+++|+.+++++++++.|.|.+.+ .++||++||..+..
T Consensus 78 d~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~-------------- 140 (243)
T PRK07102 78 DIVLIAVGTLGD-QAACEADPALALREFRTNFEGPIALLTLLANRFEARG--SGTIVGISSVAGDR-------------- 140 (243)
T ss_pred CEEEECCcCCCC-cccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC--CCEEEEEecccccC--------------
Confidence 999999998643 4556778899999999999999999999999998765 47999999987653
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|+++|++++++++.++.++ .+.||+|++|+||.++|++.....
T Consensus 141 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~v~t~~~~~~~-------- 190 (243)
T PRK07102 141 ---------------------GRASNYVYGSAKAALTAFLSGLRNRL-FKSGVHVLTVKPGFVRTPMTAGLK-------- 190 (243)
T ss_pred ---------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccChhhhccC--------
Confidence 22455689999999999999999998 567999999999999998432211
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
.+.....+|+++|+.++..+....
T Consensus 191 -----~~~~~~~~~~~~a~~i~~~~~~~~ 214 (243)
T PRK07102 191 -----LPGPLTAQPEEVAKDIFRAIEKGK 214 (243)
T ss_pred -----CCccccCCHHHHHHHHHHHHhCCC
Confidence 011235799999999999988653
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=225.08 Aligned_cols=233 Identities=18% Similarity=0.197 Sum_probs=187.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++||||++|||.++++.|+++|+ +|++++|+.+..+.+.+.+... .+++++.||++++++++++++++...+
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 9999999987776665555432 367889999999999999999998888
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|.+|+|+|.... ..+. +.++++.++++|+.+++.+.+.++|.+.+ +++||++||..+..
T Consensus 80 ~~id~ii~~ag~~~~-~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~~~iv~~ss~~~~~----------- 141 (238)
T PRK05786 80 NAIDGLVVTVGGYVE-DTVE--EFSGLEEMLTNHIKIPLYAVNASLRFLKE----GSSIVLVSSMSGIY----------- 141 (238)
T ss_pred CCCCEEEEcCCCcCC-CchH--HHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCEEEEEecchhcc-----------
Confidence 899999999997532 2332 34889999999999999999999999865 36999999976642
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.+.+....|+.||++++.+++.++.++ ...||++++|+||++.|++.... .. .
T Consensus 142 -----------------------~~~~~~~~Y~~sK~~~~~~~~~~~~~~-~~~gi~v~~i~pg~v~~~~~~~~--~~-~ 194 (238)
T PRK05786 142 -----------------------KASPDQLSYAVAKAGLAKAVEILASEL-LGRGIRVNGIAPTTISGDFEPER--NW-K 194 (238)
T ss_pred -----------------------cCCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCCCCchh--hh-h
Confidence 123456689999999999999999998 56699999999999999743211 00 0
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ... ......+++++++.++++++++....+|.++.+||.
T Consensus 195 ~----~~~-~~~~~~~~~~va~~~~~~~~~~~~~~~g~~~~~~~~ 234 (238)
T PRK05786 195 K----LRK-LGDDMAPPEDFAKVIIWLLTDEADWVDGVVIPVDGG 234 (238)
T ss_pred h----hcc-ccCCCCCHHHHHHHHHHHhcccccCccCCEEEECCc
Confidence 0 000 012357999999999999998777889999998874
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=222.78 Aligned_cols=225 Identities=25% Similarity=0.297 Sum_probs=184.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+++++||||+|+||.+++++|+++|+ +|++++|+....+...+.+... .++.++.+|+++.+++.++++++.+.+
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999995 8999999988777777766543 568899999999999999999999988
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||+|... ...+.+.+.+++++++++|+.+++++++++++.+.+. .++||++||..+..
T Consensus 81 ~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~iv~~ss~~~~~----------- 145 (237)
T PRK07326 81 GGLDVLIANAGVGH-FAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRG---GGYIINISSLAGTN----------- 145 (237)
T ss_pred CCCCEEEECCCCCC-CCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHC---CeEEEEECChhhcc-----------
Confidence 99999999999863 3456678899999999999999999999999998433 37999999987653
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+..+...|+.+|+++..+++.++.++ ...|+++++|+||.+.|+.... .... .
T Consensus 146 ------------------------~~~~~~~y~~sk~a~~~~~~~~~~~~-~~~gi~v~~v~pg~~~t~~~~~-~~~~-~ 198 (237)
T PRK07326 146 ------------------------FFAGGAAYNASKFGLVGFSEAAMLDL-RQYGIKVSTIMPGSVATHFNGH-TPSE-K 198 (237)
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeccccCccccc-ccch-h
Confidence 23456679999999999999999998 5679999999999999874322 1110 0
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceE
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY 361 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~ 361 (399)
.....+++|+++.+++++..+.....+..
T Consensus 199 ----------~~~~~~~~d~a~~~~~~l~~~~~~~~~~~ 227 (237)
T PRK07326 199 ----------DAWKIQPEDIAQLVLDLLKMPPRTLPSKI 227 (237)
T ss_pred ----------hhccCCHHHHHHHHHHHHhCCccccccce
Confidence 01136899999999999988765444444
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=261.44 Aligned_cols=220 Identities=21% Similarity=0.194 Sum_probs=184.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++|+++||||++|||++++++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|.++++++++++.+.
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 367899999999999999999999999995 9999999998888877777666678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCC--ChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~--~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++++|++|||||.... ..+.+. +.+++++++++|+.|++++++.++|.|++.+ .|+||++||.++..
T Consensus 446 ~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 514 (657)
T PRK07201 446 HGHVDYLVNNAGRSIR-RSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR--FGHVVNVSSIGVQT-------- 514 (657)
T ss_pred cCCCCEEEECCCCCCC-CChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCEEEEECChhhcC--------
Confidence 9999999999998533 222222 2578999999999999999999999998765 47999999988763
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||++++.|++.++.|+ .+.||+|++|+||+|+|++..... .
T Consensus 515 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~T~~~~~~~-~ 565 (657)
T PRK07201 515 ---------------------------NAPRFSAYVASKAALDAFSDVAASET-LSDGITFTTIHMPLVRTPMIAPTK-R 565 (657)
T ss_pred ---------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-HhhCCcEEEEECCcCcccccCccc-c
Confidence 33566789999999999999999998 567999999999999998653211 0
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
. ......+|+++|+.++..+...
T Consensus 566 ----~-------~~~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 566 ----Y-------NNVPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred ----c-------cCCCCCCHHHHHHHHHHHHHhC
Confidence 0 0123579999999999877543
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=229.01 Aligned_cols=225 Identities=19% Similarity=0.202 Sum_probs=177.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
.|++|||||+||||++++++|+++|+ +|+++.|+.+..+...+.. +.++.++.+|++|.++++++++++.+.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARY---GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999995 9999999987666554433 3468899999999999999999998888999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||... ..+..+.+.+++++.+++|+.++++++++++|+|++.+ .++||++||..+..
T Consensus 78 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~-------------- 140 (276)
T PRK06482 78 DVVVSNAGYGL-FGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG--GGRIVQVSSEGGQI-------------- 140 (276)
T ss_pred CEEEECCCCCC-CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcCccccc--------------
Confidence 99999999864 34555678899999999999999999999999998754 47999999987653
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc----hhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI----PLF 321 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~----~~~ 321 (399)
+.++...|++||++++.|++.++.++ .+.||++++|+||.+.|++...... ...
T Consensus 141 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~ 198 (276)
T PRK06482 141 ---------------------AYPGFSLYHATKWGIEGFVEAVAQEV-APFGIEFTIVEPGPARTNFGAGLDRGAPLDAY 198 (276)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCccccCCcccccccCCCccc
Confidence 33567789999999999999999998 5679999999999998874321110 000
Q ss_pred -hhhchhhHHHH----hcCCCChHHHHHHHHHhhcCC
Q 015844 322 -RLLFPPFQKYI----TKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 322 -~~~~~~~~~~~----~~~~~~pee~a~~v~~l~~~~ 353 (399)
......+.+.. ..-..+|+++++.++.++..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~ 235 (276)
T PRK06482 199 DDTPVGDLRRALADGSFAIPGDPQKMVQAMIASADQT 235 (276)
T ss_pred cchhhHHHHHHHhhccCCCCCCHHHHHHHHHHHHcCC
Confidence 00001111111 111368999999999998654
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=224.95 Aligned_cols=235 Identities=21% Similarity=0.256 Sum_probs=189.5
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+||||++++||..++++|+++|+ +|++++|+. +..+...+.+...+.++.++.+|++|+++++++++.+.+.++++|+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 58999999999999999999995 888888864 4444555555555667889999999999999999999998899999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||+|... ...+.+.+.+++++.+++|+.+++.+++.+.+.+.+.+ .++||++||.++..
T Consensus 80 vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~---------------- 140 (239)
T TIGR01830 80 LVNNAGITR-DNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQR--SGRIINISSVVGLM---------------- 140 (239)
T ss_pred EEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEECCccccC----------------
Confidence 999999863 34455678899999999999999999999999987654 46999999988764
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
+.++...|+.+|++++.+++.++.++ ...|+++++++||.++|++. ....+. .....
T Consensus 141 -------------------g~~~~~~y~~~k~a~~~~~~~l~~~~-~~~g~~~~~i~pg~~~~~~~-~~~~~~--~~~~~ 197 (239)
T TIGR01830 141 -------------------GNAGQANYAASKAGVIGFTKSLAKEL-ASRNITVNAVAPGFIDTDMT-DKLSEK--VKKKI 197 (239)
T ss_pred -------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCCCChhh-hhcChH--HHHHH
Confidence 22456789999999999999999998 56799999999999988733 211111 11111
Q ss_pred hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 328 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 328 ~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
....+..++.+++|+++.+++++.+.....+|+++.+++
T Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~ 236 (239)
T TIGR01830 198 LSQIPLGRFGTPEEVANAVAFLASDEASYITGQVIHVDG 236 (239)
T ss_pred HhcCCcCCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCC
Confidence 223334567899999999999998776778999998876
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=223.05 Aligned_cols=219 Identities=21% Similarity=0.250 Sum_probs=174.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|+++||||++|||.+++++|+++|+ +|++++|+.+..+.+.+ + .++.++.+|++|.++++++++.+.+ +++|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~-~----~~~~~~~~D~~d~~~~~~~~~~~~~--~~id 73 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQA-L----PGVHIEKLDMNDPASLDQLLQRLQG--QRFD 73 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHh-c----cccceEEcCCCCHHHHHHHHHHhhc--CCCC
Confidence 6899999999999999999999995 99999998766544322 2 2467788999999999999998754 4799
Q ss_pred EEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 167 VLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 167 ~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
+||||||+... ..++.+.+.+++++.+++|+.+++.+++.+++.+.+. .++|+++||..+..+.
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~iv~~ss~~g~~~~------------ 138 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPG---QGVLAFMSSQLGSVEL------------ 138 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhc---CCEEEEEccCcccccc------------
Confidence 99999998643 2345677889999999999999999999999998754 3689999987665311
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
.+..++..|+++|++++.|++.++.++ .++||+||+|+||+++|++....
T Consensus 139 --------------------~~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~i~PG~i~t~~~~~~--------- 188 (225)
T PRK08177 139 --------------------PDGGEMPLYKASKAALNSMTRSFVAEL-GEPTLTVLSMHPGWVKTDMGGDN--------- 188 (225)
T ss_pred --------------------CCCCCccchHHHHHHHHHHHHHHHHHh-hcCCeEEEEEcCCceecCCCCCC---------
Confidence 012345579999999999999999998 56799999999999999853211
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...++++.+..++..+.......++.|++++|+
T Consensus 189 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
T PRK08177 189 ---------APLDVETSVKGLVEQIEAASGKGGHRFIDYQGE 221 (225)
T ss_pred ---------CCCCHHHHHHHHHHHHHhCCccCCCceeCcCCc
Confidence 124778888888888777655566677888775
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=213.01 Aligned_cols=181 Identities=24% Similarity=0.303 Sum_probs=161.6
Q ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH-cC
Q 015844 85 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR-SG 162 (399)
Q Consensus 85 ~~k~~lVTG~s-~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~-~~ 162 (399)
+.|.+||||++ ||||.++|+.|++.| +.|+.++|..+...++..+. .+..+..|+++++++..+..++.+ .+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~AtaR~~e~M~~L~~~~-----gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNG-YLVYATARRLEPMAQLAIQF-----GLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCC-eEEEEEccccchHhhHHHhh-----CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 35789999987 899999999999999 59999999987777665443 477899999999999999999988 68
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++|+|+||||... ..+..+.+.+..+++|++|++|++++++++...+.+.+ |.|||++|.+++.
T Consensus 80 Gkld~L~NNAG~~C-~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK---GtIVnvgSl~~~v----------- 144 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSC-TFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK---GTIVNVGSLAGVV----------- 144 (289)
T ss_pred CceEEEEcCCCCCc-ccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc---ceEEEecceeEEe-----------
Confidence 99999999999974 45666889999999999999999999999997777764 8999999999985
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
+++-.+.|++||+|+.++++.|..|+ ++.||+|..+-||.|.|+
T Consensus 145 ------------------------pfpf~~iYsAsKAAihay~~tLrlEl-~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 145 ------------------------PFPFGSIYSASKAAIHAYARTLRLEL-KPFGVRVINAITGGVATD 188 (289)
T ss_pred ------------------------ccchhhhhhHHHHHHHHhhhhcEEee-eccccEEEEecccceecc
Confidence 56777899999999999999999999 899999999999999996
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=216.17 Aligned_cols=164 Identities=29% Similarity=0.418 Sum_probs=150.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC--hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
|++|||||++|||++++++|+++|+++|++++|+ .+..+++.+++...+.++.+++||++++++++++++++.+.+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999987899999999 67777788888777789999999999999999999999998999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|++|||||+.. ..++.+++.++|+++|++|+.+++++.+.++| .. .|+||++||..+..
T Consensus 81 ld~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~----~g~iv~~sS~~~~~------------- 140 (167)
T PF00106_consen 81 LDILINNAGIFS-DGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QG----GGKIVNISSIAGVR------------- 140 (167)
T ss_dssp ESEEEEECSCTT-SBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HT----TEEEEEEEEGGGTS-------------
T ss_pred cccccccccccc-ccccccccchhhhhccccccceeeeeeehhee--cc----ccceEEecchhhcc-------------
Confidence 999999999985 67788889999999999999999999999999 22 48999999999885
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 292 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~ 292 (399)
+.+++..|+++|+|+++|+++++.|+
T Consensus 141 ----------------------~~~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 141 ----------------------GSPGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp ----------------------SSTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 55788999999999999999999986
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=224.43 Aligned_cols=205 Identities=20% Similarity=0.247 Sum_probs=166.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++++||||++|||++++++|+++|+ +|++++|+.+.+++..+. +.++.++.||++|.++++++++++.. .+|
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~---~~d 73 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ----SANIFTLAFDVTDHPGTKAALSQLPF---IPE 73 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh----cCCCeEEEeeCCCHHHHHHHHHhccc---CCC
Confidence 6899999999999999999999995 899999998766555432 24678899999999999999887642 479
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
.+|||||... .....+.+.++|++++++|+.|++++++.+.|+|.+ +++||++||..+..
T Consensus 74 ~~i~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~iv~isS~~~~~--------------- 133 (240)
T PRK06101 74 LWIFNAGDCE-YMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC----GHRVVIVGSIASEL--------------- 133 (240)
T ss_pred EEEEcCcccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCeEEEEechhhcc---------------
Confidence 9999999742 223335688999999999999999999999999864 35899999988764
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
+.++...|+++|++++.|++.++.|+ .+.||++++|+||.|.|++.......
T Consensus 134 --------------------~~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~i~t~~~~~~~~~------- 185 (240)
T PRK06101 134 --------------------ALPRAEAYGASKAAVAYFARTLQLDL-RPKGIEVVTVFPGFVATPLTDKNTFA------- 185 (240)
T ss_pred --------------------CCCCCchhhHHHHHHHHHHHHHHHHH-HhcCceEEEEeCCcCCCCCcCCCCCC-------
Confidence 33566789999999999999999998 56799999999999999854321100
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.....+|+++|+.++..+...
T Consensus 186 ------~~~~~~~~~~a~~i~~~i~~~ 206 (240)
T PRK06101 186 ------MPMIITVEQASQEIRAQLARG 206 (240)
T ss_pred ------CCcccCHHHHHHHHHHHHhcC
Confidence 012469999999999888664
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=209.44 Aligned_cols=244 Identities=17% Similarity=0.179 Sum_probs=201.2
Q ss_pred cccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..|+||++||+|-. +.|+..||+.|.++|| .+.++..++ ++++-.+++...-+...+++||+++.++++++++++.
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GA-eL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGA-ELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCC-EEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH
Confidence 36899999999965 8999999999999998 999988876 4444444443333345789999999999999999999
Q ss_pred HcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
+++|++|+|||+-|.... .+.+.+.+.|+|...+++..++...+.+++.|.|.. +|+||-++=..+.
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~----ggSiltLtYlgs~------ 149 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN----GGSILTLTYLGSE------ 149 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC----CCcEEEEEeccce------
Confidence 999999999999998642 245557899999999999999999999999999987 4789888754443
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+..|.+..-+.+|+++++-+|.||.++ .+.|||||.|+-|+|+| +...
T Consensus 150 -----------------------------r~vPnYNvMGvAKAaLEasvRyLA~dl-G~~gIRVNaISAGPIrT--LAas 197 (259)
T COG0623 150 -----------------------------RVVPNYNVMGVAKAALEASVRYLAADL-GKEGIRVNAISAGPIRT--LAAS 197 (259)
T ss_pred -----------------------------eecCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEeeecccchHH--HHhh
Confidence 245667788999999999999999999 56799999999999998 3333
Q ss_pred cchhhhhhc-hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCc
Q 015844 317 HIPLFRLLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 369 (399)
Q Consensus 317 ~~~~~~~~~-~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~ 369 (399)
....++.+. ......|+++.+++|||++..+||+|+-+..+||..+.+|....
T Consensus 198 gI~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~~ 251 (259)
T COG0623 198 GIGDFRKMLKENEANAPLRRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGYH 251 (259)
T ss_pred ccccHHHHHHHHHhhCCccCCCCHHHhhhhHHHHhcchhcccccceEEEcCCce
Confidence 333344433 34456678999999999999999999999999999999998643
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=219.02 Aligned_cols=212 Identities=21% Similarity=0.233 Sum_probs=177.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
|++++||||+.|||++.|++||++| .+|++++|++++++.+.+++.+. +.++.++.+|.++.+.+-+-+.+..+. ..
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG-~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~-~~ 126 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRG-FNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG-LD 126 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC-Cc
Confidence 4899999999999999999999999 59999999999999999998643 568999999999988743333332222 36
Q ss_pred ccEEEecCcccC-CCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 165 id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
|.+||||+|... .+..+.+.+.+.+++++.+|+.++..+++.++|.|.+++ +|-|||+||.++..
T Consensus 127 VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~--~G~IvnigS~ag~~------------ 192 (312)
T KOG1014|consen 127 VGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERK--KGIIVNIGSFAGLI------------ 192 (312)
T ss_pred eEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCC--CceEEEeccccccc------------
Confidence 889999999975 244566777778999999999999999999999999976 68999999999984
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.|.++.|++||+.+..|+++|+.|+ +..||.|-+|.|..|.|+|.......
T Consensus 193 -----------------------p~p~~s~ysasK~~v~~~S~~L~~Ey-~~~gI~Vq~v~p~~VaTkm~~~~~~s---- 244 (312)
T KOG1014|consen 193 -----------------------PTPLLSVYSASKAFVDFFSRCLQKEY-ESKGIFVQSVIPYLVATKMAKYRKPS---- 244 (312)
T ss_pred -----------------------cChhHHHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEeehhheeccccccCCCC----
Confidence 77899999999999999999999999 67799999999999999855332211
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhc
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVS 351 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~ 351 (399)
....+|+..|...+..+.
T Consensus 245 ----------l~~ps~~tfaksal~tiG 262 (312)
T KOG1014|consen 245 ----------LFVPSPETFAKSALNTIG 262 (312)
T ss_pred ----------CcCcCHHHHHHHHHhhcC
Confidence 124588888888887765
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=213.57 Aligned_cols=216 Identities=21% Similarity=0.253 Sum_probs=173.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|+++||||+++||++++++|+++|+ +|++++|+.+..+++.. . .+.++.+|+++.++++++++++.. +++|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~----~--~~~~~~~D~~~~~~v~~~~~~~~~--~~~d 72 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQA----L--GAEALALDVADPASVAGLAWKLDG--EALD 72 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----c--cceEEEecCCCHHHHHHHHHHhcC--CCCC
Confidence 5899999999999999999999995 89999998766554332 1 245789999999999998877642 4799
Q ss_pred EEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 167 VLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 167 ~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
++|||+|.... ...+.+.+.++|++.+++|+.+++++++.+.|.|.+. .|++|++||..+..+..
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~~~----------- 138 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAA---GGVLAVLSSRMGSIGDA----------- 138 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhcc---CCeEEEEcCcccccccc-----------
Confidence 99999998632 2345567899999999999999999999999988664 37999999987764210
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+......|+.+|++++.+++.++.++ .++++++|+||+++|++...
T Consensus 139 ---------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~---~~i~v~~v~Pg~i~t~~~~~---------- 184 (222)
T PRK06953 139 ---------------------TGTTGWLYRASKAALNDALRAASLQA---RHATCIALHPGWVRTDMGGA---------- 184 (222)
T ss_pred ---------------------cCCCccccHHhHHHHHHHHHHHhhhc---cCcEEEEECCCeeecCCCCC----------
Confidence 11122369999999999999999886 38999999999999985321
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....++++.+..+..++.......+|.|+.+|++
T Consensus 185 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (222)
T PRK06953 185 --------QAALDPAQSVAGMRRVIAQATRRDNGRFFQYDGV 218 (222)
T ss_pred --------CCCCCHHHHHHHHHHHHHhcCcccCceEEeeCCc
Confidence 1235889999999998777767799999998875
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=215.75 Aligned_cols=207 Identities=18% Similarity=0.227 Sum_probs=171.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+.+++++||||+||||+++|++|+++|+.+|++++|+.++.++ .+.++.++.+|++|.++++++++.
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~---- 70 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LGPRVVPLQLDVTDPASVAAAAEA---- 70 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cCCceEEEEecCCCHHHHHHHHHh----
Confidence 457889999999999999999999999995489999998765443 245788999999999999887765
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
.+++|+||||||.......+.+.+.++|.+.+++|+.+++.+++++.+.+++.+ .++||++||..+..
T Consensus 71 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~---------- 138 (238)
T PRK08264 71 ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANG--GGAIVNVLSVLSWV---------- 138 (238)
T ss_pred cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcChhhcc----------
Confidence 467999999999844555677789999999999999999999999999988764 47999999987763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|+.+|++++.+++.++.++ .+.||++++++||.++|++... ..
T Consensus 139 -------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~v~pg~v~t~~~~~-~~--- 188 (238)
T PRK08264 139 -------------------------NFPNLGTYSASKAAAWSLTQALRAEL-APQGTRVLGVHPGPIDTDMAAG-LD--- 188 (238)
T ss_pred -------------------------CCCCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeCCccccccccc-CC---
Confidence 33566789999999999999999998 5669999999999999984321 10
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
....+++++++.++..+...
T Consensus 189 ------------~~~~~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 189 ------------APKASPADVARQILDALEAG 208 (238)
T ss_pred ------------cCCCCHHHHHHHHHHHHhCC
Confidence 11468899999998887653
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=217.93 Aligned_cols=222 Identities=20% Similarity=0.168 Sum_probs=172.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||+||||++++++|+++|+ +|++++|+.+..+++.+.....+.++.++.+|++|++++.++++ +++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~i 74 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE------WDV 74 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc------CCC
Confidence 57899999999999999999999995 99999999877666666555555678899999999999877654 379
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||... ..++.+.+.++|+..+++|+.+++.+++.+++.+.+.+ .++||++||..+..
T Consensus 75 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~SS~~~~~-------------- 137 (257)
T PRK09291 75 DVLLNNAGIGE-AGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG--KGKVVFTSSMAGLI-------------- 137 (257)
T ss_pred CEEEECCCcCC-CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEcChhhcc--------------
Confidence 99999999863 45667889999999999999999999999999998765 37999999987764
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||++.|++.............
T Consensus 138 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~ 195 (257)
T PRK09291 138 ---------------------TGPFTGAYCASKHALEAIAEAMHAEL-KPFGIQVATVNPGPYLTGFNDTMAETPKRWYD 195 (257)
T ss_pred ---------------------CCCCcchhHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccccchhhhhhhhhhhcc
Confidence 22456789999999999999999998 56799999999999998743211111111000
Q ss_pred h---hhH--H-HHhcCCCChHHHHHHHHHhhcCC
Q 015844 326 P---PFQ--K-YITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 326 ~---~~~--~-~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
. .+. . .......++++++..++.++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (257)
T PRK09291 196 PARNFTDPEDLAFPLEQFDPQEMIDAMVEVIPAD 229 (257)
T ss_pred hhhHHHhhhhhhccccCCCHHHHHHHHHHHhcCC
Confidence 0 000 0 01122468999999888877553
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=213.12 Aligned_cols=222 Identities=24% Similarity=0.290 Sum_probs=189.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+.++||||++|||+++|..+..+|+ .|.++.|+..+++++.+.++-. -..+.+..+|+.|.+++..+++++.+..++
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 6899999999999999999999996 9999999999999988887533 123778999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|.+|||||.. ..+.+.+.+.++++..+++|++|+++++++.++.|++..+ .|+|+++||.++..
T Consensus 113 ~d~l~~cAG~~-v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~-~g~I~~vsS~~a~~------------- 177 (331)
T KOG1210|consen 113 IDNLFCCAGVA-VPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREH-LGRIILVSSQLAML------------- 177 (331)
T ss_pred cceEEEecCcc-cccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhcccc-CcEEEEehhhhhhc-------------
Confidence 99999999997 4578889999999999999999999999999999998763 46999999999885
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
++.++++|+++|+|+.+|+..+..|+ .+.||+|....|+.++||++.++.....
T Consensus 178 ----------------------~i~GysaYs~sK~alrgLa~~l~qE~-i~~~v~Vt~~~P~~~~tpGfE~En~tkP--- 231 (331)
T KOG1210|consen 178 ----------------------GIYGYSAYSPSKFALRGLAEALRQEL-IKYGVHVTLYYPPDTLTPGFERENKTKP--- 231 (331)
T ss_pred ----------------------CcccccccccHHHHHHHHHHHHHHHH-hhcceEEEEEcCCCCCCCccccccccCc---
Confidence 56789999999999999999999999 5669999999999999998766543211
Q ss_pred chhhHHHH--hcCCCChHHHHHHHHHhhcC
Q 015844 325 FPPFQKYI--TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 325 ~~~~~~~~--~~~~~~pee~a~~v~~l~~~ 352 (399)
..-+.. .....++||+|..++.-+..
T Consensus 232 --~~t~ii~g~ss~~~~e~~a~~~~~~~~r 259 (331)
T KOG1210|consen 232 --EETKIIEGGSSVIKCEEMAKAIVKGMKR 259 (331)
T ss_pred --hheeeecCCCCCcCHHHHHHHHHhHHhh
Confidence 111111 12346899999998866543
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-28 Score=209.00 Aligned_cols=241 Identities=16% Similarity=0.159 Sum_probs=183.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++|+||+|+|||..++..+..++ ...+..+++....+ ........+........|++...-..++++..+.++++
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed-~e~~r~g~~r~~a~-~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gk 82 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAED-DEALRYGVARLLAE-LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGK 82 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcc-hHHHHHhhhccccc-ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence 46789999999999999888888777 45555444433222 11111222344556678899888899999999999999
Q ss_pred ccEEEecCcccCCCCCCC--CCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~--~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.|++|||||...+..... ..+.++|++.|+.|+++.+.|.+.++|.++++. ..+.+||+||.+...
T Consensus 83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p-~~~~vVnvSS~aav~----------- 150 (253)
T KOG1204|consen 83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSP-VNGNVVNVSSLAAVR----------- 150 (253)
T ss_pred eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCC-ccCeEEEecchhhhc-----------
Confidence 999999999976543333 567899999999999999999999999999874 247999999999884
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc--ccchh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR--EHIPL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~--~~~~~ 320 (399)
+++++..||++|+|.++|++.||.|- +.+++|.++.||.|+|+|-.. +....
T Consensus 151 ------------------------p~~~wa~yc~~KaAr~m~f~~lA~EE--p~~v~vl~~aPGvvDT~mq~~ir~~~~~ 204 (253)
T KOG1204|consen 151 ------------------------PFSSWAAYCSSKAARNMYFMVLASEE--PFDVRVLNYAPGVVDTQMQVCIRETSRM 204 (253)
T ss_pred ------------------------cccHHHHhhhhHHHHHHHHHHHhhcC--ccceeEEEccCCcccchhHHHHhhccCC
Confidence 88999999999999999999999983 469999999999999986532 11111
Q ss_pred hhhhchhhHHH-HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 321 FRLLFPPFQKY-ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.......+... -.+++.+|...|+.+..|+.... ..+|+|+++..
T Consensus 205 ~p~~l~~f~el~~~~~ll~~~~~a~~l~~L~e~~~-f~sG~~vdy~D 250 (253)
T KOG1204|consen 205 TPADLKMFKELKESGQLLDPQVTAKVLAKLLEKGD-FVSGQHVDYYD 250 (253)
T ss_pred CHHHHHHHHHHHhcCCcCChhhHHHHHHHHHHhcC-ccccccccccc
Confidence 11111122221 23568899999999999987765 68999998754
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=213.76 Aligned_cols=202 Identities=19% Similarity=0.167 Sum_probs=149.2
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.++++|+++||||++|||+++|+.|+++|+ +|++++|+.....+. .. .+ ...++.+|++|.+++++
T Consensus 9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~--~~--~~-~~~~~~~D~~~~~~~~~------- 75 (245)
T PRK12367 9 QSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSES--ND--ES-PNEWIKWECGKEESLDK------- 75 (245)
T ss_pred HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhh--hc--cC-CCeEEEeeCCCHHHHHH-------
Confidence 3467899999999999999999999999995 999999886221111 11 11 12578899999988764
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.++++|++|||||+... .+.+.++|++++++|+.|++++++.++|.|.+++. .++.+++.||.++..
T Consensus 76 ~~~~iDilVnnAG~~~~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~-------- 143 (245)
T PRK12367 76 QLASLDVLILNHGINPG----GRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ-------- 143 (245)
T ss_pred hcCCCCEEEECCccCCc----CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC--------
Confidence 34689999999997522 24688999999999999999999999999976421 123444445544431
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHH---HHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM---QEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~---~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+ +....|++||+|+..+. +.++.++ .+.|++|++++||.++|++.
T Consensus 144 ---------------------------~-~~~~~Y~aSKaal~~~~~l~~~l~~e~-~~~~i~v~~~~pg~~~t~~~--- 191 (245)
T PRK12367 144 ---------------------------P-ALSPSYEISKRLIGQLVSLKKNLLDKN-ERKKLIIRKLILGPFRSELN--- 191 (245)
T ss_pred ---------------------------C-CCCchhHHHHHHHHHHHHHHHHHHHhh-cccccEEEEecCCCcccccC---
Confidence 1 23457999999986543 4444454 46799999999999998731
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
+ ....+|+++|+.+++.+.....
T Consensus 192 --~--------------~~~~~~~~vA~~i~~~~~~~~~ 214 (245)
T PRK12367 192 --P--------------IGIMSADFVAKQILDQANLGLY 214 (245)
T ss_pred --c--------------cCCCCHHHHHHHHHHHHhcCCc
Confidence 0 1246899999999999876544
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=212.26 Aligned_cols=221 Identities=24% Similarity=0.268 Sum_probs=174.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc-CCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~g~i 165 (399)
|+++||||+||||.++++.|+++|+ +|++++|+.++.+...+ ..+..+.||++|.+++.++++.+.+. .+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 75 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNS------LGFTGILLDLDDPESVERAADEVIALTDNRL 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHh------CCCeEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999995 99999999876654422 13678899999999999999988764 3689
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||+|... ..++.+.+.+++++++++|+.|++++++.+++.+.+.+ .++||++||..+..
T Consensus 76 ~~ii~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~-------------- 138 (256)
T PRK08017 76 YGLFNNAGFGV-YGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG--EGRIVMTSSVMGLI-------------- 138 (256)
T ss_pred eEEEECCCCCC-ccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CCEEEEEcCccccc--------------
Confidence 99999999753 34566788999999999999999999999999998765 46999999987663
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|+++|++++.+++.++.++ ...||++++|+||.+.|++... ...... ..
T Consensus 139 ---------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~-~~~~~~-~~ 194 (256)
T PRK08017 139 ---------------------STPGRGAYAASKYALEAWSDALRMEL-RHSGIKVSLIEPGPIRTRFTDN-VNQTQS-DK 194 (256)
T ss_pred ---------------------CCCCccHHHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeCCCcccchhhc-ccchhh-cc
Confidence 23456789999999999999999988 5669999999999999874322 111000 00
Q ss_pred hhhH-HHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 326 PPFQ-KYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 326 ~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.... ....+.+.+|+|+++.+..++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 195 PVENPGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred chhhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 0000 01112358999999999999977654
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=217.92 Aligned_cols=227 Identities=20% Similarity=0.129 Sum_probs=161.5
Q ss_pred HHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCC
Q 015844 102 TAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 181 (399)
Q Consensus 102 ia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~ 181 (399)
+|+.|+++|+ +|++++|+.++.+. ..+++||++|.++++++++++. +++|+||||||+..
T Consensus 1 ~a~~l~~~G~-~Vv~~~r~~~~~~~-----------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~----- 60 (241)
T PRK12428 1 TARLLRFLGA-RVIGVDRREPGMTL-----------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG----- 60 (241)
T ss_pred ChHHHHhCCC-EEEEEeCCcchhhh-----------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC-----
Confidence 4789999995 99999998755321 2357899999999999998774 58999999999752
Q ss_pred CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 015844 182 PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSS 261 (399)
Q Consensus 182 ~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (399)
.+.|++++++|+.+++++++.++|.|.+ .|+||++||.+++... . ..+. ........+....-.
T Consensus 61 ----~~~~~~~~~vN~~~~~~l~~~~~~~~~~----~g~Iv~isS~~~~~~~-~-~~~~------~~~~~~~~~~~~~~~ 124 (241)
T PRK12428 61 ----TAPVELVARVNFLGLRHLTEALLPRMAP----GGAIVNVASLAGAEWP-Q-RLEL------HKALAATASFDEGAA 124 (241)
T ss_pred ----CCCHHHhhhhchHHHHHHHHHHHHhccC----CcEEEEeCcHHhhccc-c-chHH------HHhhhccchHHHHHH
Confidence 1358899999999999999999999864 3699999999876310 0 0000 000000000000000
Q ss_pred CCCCCCCChhhhHHHhHHHHHHHHHHHH-HhhccCCceEEEEeeCCcccCCCCccccchh-hhhhchhhHHHHhcCCCCh
Q 015844 262 MIDGGDFDGAKAYKDSKVCNMLTMQEFH-RRFHEETGIAFASLYPGCIATTGLFREHIPL-FRLLFPPFQKYITKGYVSE 339 (399)
Q Consensus 262 ~~~~~~~~~~~~Y~~sK~a~~~~~~~la-~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p 339 (399)
.....+.++...|++||+++++|++.++ .++ .+.||+||+|+||.|+|++........ ...... ...+.+++.+|
T Consensus 125 ~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~-~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~--~~~~~~~~~~p 201 (241)
T PRK12428 125 WLAAHPVALATGYQLSKEALILWTMRQAQPWF-GARGIRVNCVAPGPVFTPILGDFRSMLGQERVDS--DAKRMGRPATA 201 (241)
T ss_pred hhhccCCCcccHHHHHHHHHHHHHHHHHHHhh-hccCeEEEEeecCCccCcccccchhhhhhHhhhh--cccccCCCCCH
Confidence 0001245677899999999999999999 888 567999999999999998653311100 000101 12345678899
Q ss_pred HHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 340 DEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 340 ee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
||+|+.++|++++...+++|+.+.+||.
T Consensus 202 e~va~~~~~l~s~~~~~~~G~~i~vdgg 229 (241)
T PRK12428 202 DEQAAVLVFLCSDAARWINGVNLPVDGG 229 (241)
T ss_pred HHHHHHHHHHcChhhcCccCcEEEecCc
Confidence 9999999999998888899999999884
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=196.23 Aligned_cols=210 Identities=23% Similarity=0.289 Sum_probs=166.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
.|++|||||+|+||+++++.|+++ . +|++++|+.+..++..+.. ..+.++.+|++|.++++++++.+ +++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~----~~i 72 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAEL----PGATPFPVDLTDPEAIAAAVEQL----GRL 72 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHh----ccceEEecCCCCHHHHHHHHHhc----CCC
Confidence 478999999999999999999998 5 8999999977655544332 24778899999999998887653 479
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||++|... ...+.+.+.++|.+++++|+.+.+.+++.+++.+.++. +++|++||..+..
T Consensus 73 d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~v~~ss~~~~~-------------- 134 (227)
T PRK08219 73 DVLVHNAGVAD-LGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH---GHVVFINSGAGLR-------------- 134 (227)
T ss_pred CEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CeEEEEcchHhcC--------------
Confidence 99999999863 34556778899999999999999999999999988763 6999999987753
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|+.+|.+++.+++.++.++ ... |++++|+||.++|++... ....
T Consensus 135 ---------------------~~~~~~~y~~~K~a~~~~~~~~~~~~-~~~-i~~~~i~pg~~~~~~~~~-~~~~----- 185 (227)
T PRK08219 135 ---------------------ANPGWGSYAASKFALRALADALREEE-PGN-VRVTSVHPGRTDTDMQRG-LVAQ----- 185 (227)
T ss_pred ---------------------cCCCCchHHHHHHHHHHHHHHHHHHh-cCC-ceEEEEecCCccchHhhh-hhhh-----
Confidence 22456789999999999999999887 333 999999999998873321 1100
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.....+..++++++|+|+.+++++..+
T Consensus 186 -~~~~~~~~~~~~~~dva~~~~~~l~~~ 212 (227)
T PRK08219 186 -EGGEYDPERYLRPETVAKAVRFAVDAP 212 (227)
T ss_pred -hccccCCCCCCCHHHHHHHHHHHHcCC
Confidence 001122345789999999999999764
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=202.02 Aligned_cols=198 Identities=18% Similarity=0.178 Sum_probs=150.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++||||+||||+++++.|+++|+ +|++++|+.++.+.... .....+..+.+|++|.+++.+.+
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~---~~~~~v~~v~~Dvsd~~~v~~~l------- 243 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEIN---GEDLPVKTLHWQVGQEAALAELL------- 243 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh---hcCCCeEEEEeeCCCHHHHHHHh-------
Confidence 56799999999999999999999999996 99999998765543222 12234678899999998876543
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC--CCceEEEEeccccccCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY--PSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~--~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++|++|||||+... .+.+.+++++++++|+.|++.++++++|.|++++. .++.+|++|| ++..
T Consensus 244 ~~IDiLInnAGi~~~----~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~~--------- 309 (406)
T PRK07424 244 EKVDILIINHGINVH----GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEVN--------- 309 (406)
T ss_pred CCCCEEEECCCcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-cccc---------
Confidence 479999999998532 25688999999999999999999999999987642 1234566654 3221
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+....|++||+|+..|+. +.++. .++.+..+.||.++|++. +
T Consensus 310 ---------------------------~~~~~~Y~ASKaAl~~l~~-l~~~~---~~~~I~~i~~gp~~t~~~-----~- 352 (406)
T PRK07424 310 ---------------------------PAFSPLYELSKRALGDLVT-LRRLD---APCVVRKLILGPFKSNLN-----P- 352 (406)
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHH-HHHhC---CCCceEEEEeCCCcCCCC-----c-
Confidence 1234579999999999974 44432 367778889999988731 1
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
....+||++|+.+++.+.....
T Consensus 353 -------------~~~~spe~vA~~il~~i~~~~~ 374 (406)
T PRK07424 353 -------------IGVMSADWVAKQILKLAKRDFR 374 (406)
T ss_pred -------------CCCCCHHHHHHHHHHHHHCCCC
Confidence 1246999999999999977655
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=240.19 Aligned_cols=183 Identities=20% Similarity=0.151 Sum_probs=155.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecCh-----------------------------------------
Q 015844 84 LRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDF----------------------------------------- 121 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~----------------------------------------- 121 (399)
-+++++|||||++|||.++|++|+++ |+ +|++++|+.
T Consensus 1995 ~~g~vvLVTGGarGIG~aiA~~LA~~~ga-~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~ 2073 (2582)
T TIGR02813 1995 NSDDVFLVTGGAKGVTFECALELAKQCQA-HFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALV 2073 (2582)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHhcCC-EEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcc
Confidence 36899999999999999999999998 55 999999982
Q ss_pred ------HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhc
Q 015844 122 ------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195 (399)
Q Consensus 122 ------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 195 (399)
.+.....+.+...|.++.++.||++|.++++++++++.+. ++||+||||||+. ....+.+.+.++|+++|++
T Consensus 2074 ~~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~-~~~~i~~~t~e~f~~v~~~ 2151 (2582)
T TIGR02813 2074 RPVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVL-ADKHIQDKTLEEFNAVYGT 2151 (2582)
T ss_pred cccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccC-CCCCcccCCHHHHHHHHHH
Confidence 0111222334445778999999999999999999999877 6899999999997 4567889999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHH
Q 015844 196 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYK 275 (399)
Q Consensus 196 N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 275 (399)
|+.|.+++++++.+.+. ++||++||+++.. +.+++..|+
T Consensus 2152 nv~G~~~Ll~al~~~~~------~~IV~~SSvag~~-----------------------------------G~~gqs~Ya 2190 (2582)
T TIGR02813 2152 KVDGLLSLLAALNAENI------KLLALFSSAAGFY-----------------------------------GNTGQSDYA 2190 (2582)
T ss_pred HHHHHHHHHHHHHHhCC------CeEEEEechhhcC-----------------------------------CCCCcHHHH
Confidence 99999999999877543 4899999999886 336788999
Q ss_pred HhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 276 DSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 276 ~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
++|.+++.+++.++.++ .+++|++|+||.++|.|.
T Consensus 2191 aAkaaL~~la~~la~~~---~~irV~sI~wG~wdtgm~ 2225 (2582)
T TIGR02813 2191 MSNDILNKAALQLKALN---PSAKVMSFNWGPWDGGMV 2225 (2582)
T ss_pred HHHHHHHHHHHHHHHHc---CCcEEEEEECCeecCCcc
Confidence 99999999999999986 369999999999999754
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=177.96 Aligned_cols=237 Identities=25% Similarity=0.319 Sum_probs=182.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCC----cEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga----~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.|++||||+++|||.+||.+|++..- -++++++|+.++++++...+... ..++.++.+|+++..++.++..+
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 57999999999999999999987652 26889999999999998887543 34688999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCC-------------C-------------CCCCChhhhhHhhhchhhHHHHHHHHHHHHH
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTA-------------K-------------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDL 211 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~-------------~-------------~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 211 (399)
+.+++.++|.+..|||++..++ + ....+.+++..+|++|++|+|.+.+.+.|.+
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 9999999999999999874322 0 1135788999999999999999999999999
Q ss_pred hhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHh
Q 015844 212 KQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR 291 (399)
Q Consensus 212 ~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~ 291 (399)
..++. ..+|.+||..+.- +..+++|++ ...+..+|..||.+.+.+.-++-+.
T Consensus 163 ~~~~~--~~lvwtSS~~a~k--------k~lsleD~q------------------~~kg~~pY~sSKrl~DlLh~A~~~~ 214 (341)
T KOG1478|consen 163 CHSDN--PQLVWTSSRMARK--------KNLSLEDFQ------------------HSKGKEPYSSSKRLTDLLHVALNRN 214 (341)
T ss_pred hcCCC--CeEEEEeeccccc--------ccCCHHHHh------------------hhcCCCCcchhHHHHHHHHHHHhcc
Confidence 88774 3899999988762 334455543 3356678999999999999888888
Q ss_pred hccCCceEEEEeeCCcccCCCCccccchhhhhhc----hhhHHHHhcC--CCChHHHHHHHHHhhcC
Q 015844 292 FHEETGIAFASLYPGCIATTGLFREHIPLFRLLF----PPFQKYITKG--YVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 292 ~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~pee~a~~v~~l~~~ 352 (399)
+ .+.|+.-.+++||+.-|. +........-.+- -...+..... -.+|-.+|.+.+|+...
T Consensus 215 ~-~~~g~~qyvv~pg~~tt~-~~~~~l~~~~~~~~~~~fyl~rllgspwh~id~y~aa~A~vw~~l~ 279 (341)
T KOG1478|consen 215 F-KPLGINQYVVQPGIFTTN-SFSEYLNPFTYFGMLCGFYLARLLGSPWHNIDPYKAANAPVWVTLA 279 (341)
T ss_pred c-cccchhhhcccCceeecc-hhhhhhhhHHHHHHHHHHHHHHHhcCcccccCccccccchhhhhhc
Confidence 7 677999999999998775 4333332211111 1122222222 25777788888877643
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=180.38 Aligned_cols=175 Identities=22% Similarity=0.265 Sum_probs=137.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+||||||.||||..++++|+++|+.+|++++|+. ...++..++++..+.++.++.||++|++++.++++++.+.+++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 8999999999999999999999988999999993 2445677777777889999999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
|++|||+||.. .+..+.+.+.++++.++..++.|.++|.+.+.+.- -..+|++||+++..|.
T Consensus 82 i~gVih~ag~~-~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~------l~~~i~~SSis~~~G~----------- 143 (181)
T PF08659_consen 82 IDGVIHAAGVL-ADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRP------LDFFILFSSISSLLGG----------- 143 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT------TSEEEEEEEHHHHTT------------
T ss_pred cceeeeeeeee-cccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC------CCeEEEECChhHhccC-----------
Confidence 99999999997 45688899999999999999999999999876521 2499999999998743
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
+++..|+++.+.++.|++.... .|.++.+|+-|..+
T Consensus 144 ------------------------~gq~~YaaAN~~lda~a~~~~~-----~g~~~~sI~wg~W~ 179 (181)
T PF08659_consen 144 ------------------------PGQSAYAAANAFLDALARQRRS-----RGLPAVSINWGAWD 179 (181)
T ss_dssp ------------------------TTBHHHHHHHHHHHHHHHHHHH-----TTSEEEEEEE-EBS
T ss_pred ------------------------cchHhHHHHHHHHHHHHHHHHh-----CCCCEEEEEccccC
Confidence 6899999999999988875543 27778899888764
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=172.70 Aligned_cols=176 Identities=22% Similarity=0.249 Sum_probs=142.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH---HHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA---AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~---~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
|+++||||++|||.++++.|+++|++.|++.+|+....+.. .++++..+.++.++.+|++++++++++++++...++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999965788888875433221 234444566788999999999999999999988889
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||... ...+.+.+.+++++++++|+.+++++++.+.+ .+ .++||++||..+..
T Consensus 81 ~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~ii~~ss~~~~~------------ 141 (180)
T smart00822 81 PLRGVIHAAGVLD-DGLLANLTPERFAAVLAPKVDGAWNLHELTRD----LP--LDFFVLFSSVAGVL------------ 141 (180)
T ss_pred CeeEEEEccccCC-ccccccCCHHHHHHhhchHhHHHHHHHHHhcc----CC--cceEEEEccHHHhc------------
Confidence 9999999999863 34556778899999999999999999998843 11 36999999987764
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
+.++...|+++|.++..+++.++. .|+++++++||+++
T Consensus 142 -----------------------~~~~~~~y~~sk~~~~~~~~~~~~-----~~~~~~~~~~g~~~ 179 (180)
T smart00822 142 -----------------------GNPGQANYAAANAFLDALAAHRRA-----RGLPATSINWGAWA 179 (180)
T ss_pred -----------------------CCCCchhhHHHHHHHHHHHHHHHh-----cCCceEEEeecccc
Confidence 224567899999999998876543 38889999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=189.17 Aligned_cols=211 Identities=16% Similarity=0.159 Sum_probs=151.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-----CC----CcEEEEEecCCCHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AK----ENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-----~~----~~~~~~~~Dvs~~~~v~~ 153 (399)
..+||++|||||+||||++++++|+++| ++|++++|+.++++.+.+.+.. .+ .++.++.+|++|.+++++
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 4578999999999999999999999999 5999999998877766554422 11 358899999999998765
Q ss_pred HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
.+ +++|+||||+|.... ...++...+++|+.|..++++++... + .++||++||..+...
T Consensus 156 aL-------ggiDiVVn~AG~~~~-------~v~d~~~~~~VN~~Gt~nLl~Aa~~a----g--VgRIV~VSSiga~~~- 214 (576)
T PLN03209 156 AL-------GNASVVICCIGASEK-------EVFDVTGPYRIDYLATKNLVDAATVA----K--VNHFILVTSLGTNKV- 214 (576)
T ss_pred Hh-------cCCCEEEEccccccc-------cccchhhHHHHHHHHHHHHHHHHHHh----C--CCEEEEEccchhccc-
Confidence 43 479999999997521 12247788999999999999987653 1 369999999865310
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.+. ..|. +|.++..+.+.+..++ ...||++++|+||++.|++.
T Consensus 215 ---------------------------------g~p~-~~~~-sk~~~~~~KraaE~~L-~~sGIrvTIVRPG~L~tp~d 258 (576)
T PLN03209 215 ---------------------------------GFPA-AILN-LFWGVLCWKRKAEEAL-IASGLPYTIVRPGGMERPTD 258 (576)
T ss_pred ---------------------------------Cccc-cchh-hHHHHHHHHHHHHHHH-HHcCCCEEEEECCeecCCcc
Confidence 0011 1133 6666666667777776 45699999999999988733
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
..... ..+.......+.++.++++|+|+.++|+++++.
T Consensus 259 ~~~~t---~~v~~~~~d~~~gr~isreDVA~vVvfLasd~~ 296 (576)
T PLN03209 259 AYKET---HNLTLSEEDTLFGGQVSNLQVAELMACMAKNRR 296 (576)
T ss_pred ccccc---cceeeccccccCCCccCHHHHHHHHHHHHcCch
Confidence 21100 001111112334667899999999999999764
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=179.79 Aligned_cols=208 Identities=16% Similarity=0.155 Sum_probs=150.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++|++|||||+|+||.++++.|+++| ..+|++++|+......+.+.+. +.++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~--~~~~~~v~~Dl~d~~~l~~~~~------ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--APCLRFFIGDVRDKERLTRALR------ 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHh------
Confidence 468899999999999999999999986 2488888888655444433332 2468889999999999888765
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.+|+|||+||.... +. ...+..+.+++|+.|++++++++.+. + .++||++||....
T Consensus 74 -~iD~Vih~Ag~~~~--~~---~~~~~~~~~~~Nv~g~~~ll~aa~~~----~--~~~iV~~SS~~~~------------ 129 (324)
T TIGR03589 74 -GVDYVVHAAALKQV--PA---AEYNPFECIRTNINGAQNVIDAAIDN----G--VKRVVALSTDKAA------------ 129 (324)
T ss_pred -cCCEEEECcccCCC--ch---hhcCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEeCCCCC------------
Confidence 48999999997521 22 22233578999999999999998753 1 2599999986432
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.+...|++||++.+.+++.++.++ ...|+++++|+||.|.++.- ...+...
T Consensus 130 --------------------------~p~~~Y~~sK~~~E~l~~~~~~~~-~~~gi~~~~lR~g~v~G~~~--~~i~~~~ 180 (324)
T TIGR03589 130 --------------------------NPINLYGATKLASDKLFVAANNIS-GSKGTRFSVVRYGNVVGSRG--SVVPFFK 180 (324)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHHHHhhc-cccCcEEEEEeecceeCCCC--CcHHHHH
Confidence 124579999999999999988766 55699999999999988631 1112111
Q ss_pred hhchhhH-HHH------hcCCCChHHHHHHHHHhhcC
Q 015844 323 LLFPPFQ-KYI------TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 323 ~~~~~~~-~~~------~~~~~~pee~a~~v~~l~~~ 352 (399)
....... ..+ .+-++.++|+++.++.++..
T Consensus 181 ~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~ 217 (324)
T TIGR03589 181 SLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLER 217 (324)
T ss_pred HHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhh
Confidence 1000000 001 12257899999999998865
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=173.35 Aligned_cols=238 Identities=18% Similarity=0.117 Sum_probs=158.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++|++|||||+|+||+++++.|+++|+ .|+++.|+....+........ ...++.++.+|++|.++++++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~------ 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID------ 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc------
Confidence 478999999999999999999999994 898888886544333222211 12468889999999999888775
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++|+||||||.... ..+.+.+.+.+++|+.|++++++++.+.+. .++||++||.+++.+......+ .
T Consensus 77 -~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~-----~~~iv~~SS~~~~~~~~~~~~~-~- 143 (325)
T PLN02989 77 -GCETVFHTASPVAI-----TVKTDPQVELINPAVNGTINVLRTCTKVSS-----VKRVILTSSMAAVLAPETKLGP-N- 143 (325)
T ss_pred -CCCEEEEeCCCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHHHcCC-----ceEEEEecchhheecCCccCCC-C-
Confidence 58999999996421 234556789999999999999999887532 2599999998776422100000 0
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCC------hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFD------GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
.+..|..+.. ....|+.||.+.+.+++.+++++ |+++++++|+.+.+|.....
T Consensus 144 -----------------~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~~~~ 202 (325)
T PLN02989 144 -----------------DVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN----EIDLIVLNPGLVTGPILQPT 202 (325)
T ss_pred -----------------CccCcCCCCchhHhcccccchHHHHHHHHHHHHHHHHHc----CCeEEEEcCCceeCCCCCCC
Confidence 0011111111 23579999999999888887664 89999999999998854321
Q ss_pred cchhhhhhchhhH-HHH----hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 317 HIPLFRLLFPPFQ-KYI----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 317 ~~~~~~~~~~~~~-~~~----~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.......+..... +.+ .+.++.++|+|++++.++..+.. .|.|. .++
T Consensus 203 ~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~~~~--~~~~n-i~~ 254 (325)
T PLN02989 203 LNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALETPSA--NGRYI-IDG 254 (325)
T ss_pred CCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcCccc--CceEE-Eec
Confidence 1000011111100 001 12356789999999988876432 45553 344
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=169.52 Aligned_cols=257 Identities=16% Similarity=0.098 Sum_probs=168.4
Q ss_pred cCCCEEEEEcCCChHHHH--HHHHHHHcCCcEEEEeecChHH------------HHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 84 LRKGSVIITGASSGLGLA--TAKALAETGKWHIIMACRDFLK------------AERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~a--ia~~l~~~Ga~~vv~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
-.+|++||||+++|||.+ +|+.| ++|| +|+++++..+. .+.+.+.+...+..+..+.||+++.+
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 357899999999999999 89999 9997 77777743211 12233344444666788999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCC----------------CC-----------------CCChhhhhHhhhch
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK----------------EP-----------------TFTAEGFELSVGTN 196 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~----------------~~-----------------~~~~~~~~~~~~~N 196 (399)
+++++++++.+.+|+||+||||+|......+ +. ..+.++++.+ ++
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~T--v~ 194 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADT--VK 194 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHH--HH
Confidence 9999999999999999999999998632110 10 1334444443 34
Q ss_pred hhHH---HHHH--HHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh
Q 015844 197 HLGH---FLLS--RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA 271 (399)
Q Consensus 197 ~~g~---~~l~--~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (399)
++|. ...+ +...+.|.+ ++++|-+|...... .++.+
T Consensus 195 vMggedw~~Wi~al~~a~lla~----g~~~va~TY~G~~~-----------------------------------t~p~Y 235 (398)
T PRK13656 195 VMGGEDWELWIDALDEAGVLAE----GAKTVAYSYIGPEL-----------------------------------THPIY 235 (398)
T ss_pred hhccchHHHHHHHHHhcccccC----CcEEEEEecCCcce-----------------------------------eeccc
Confidence 5554 2233 333444533 47999998865542 22333
Q ss_pred --hhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHh
Q 015844 272 --KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (399)
Q Consensus 272 --~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l 349 (399)
..-+.+|++++..++.|+.+| ++.|||+|++.+|.+.|.. ....|.+......+.+.. +.-++-|.+.+.+..|
T Consensus 236 ~~g~mG~AKa~LE~~~r~La~~L-~~~giran~i~~g~~~T~A--ss~Ip~~~ly~~~l~kvm-k~~g~he~~ieq~~rl 311 (398)
T PRK13656 236 WDGTIGKAKKDLDRTALALNEKL-AAKGGDAYVSVLKAVVTQA--SSAIPVMPLYISLLFKVM-KEKGTHEGCIEQIYRL 311 (398)
T ss_pred CCchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCcccchh--hhcCCCcHHHHHHHHHHH-HhcCCCCChHHHHHHH
Confidence 366899999999999999999 5679999999999999962 233444333333333332 3335667777777777
Q ss_pred hcCCCCCCCceEEccCCCCcccccccCcccCCHHHHH---HHHHH
Q 015844 350 VSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKAR---KVWEI 391 (399)
Q Consensus 350 ~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~---~lw~~ 391 (399)
..+.- +..|..-..|... -.+.+++..+++.|+ +||+.
T Consensus 312 ~~~~l-y~~~~~~~~d~~~---r~r~d~~el~~~vq~~v~~~~~~ 352 (398)
T PRK13656 312 FSERL-YRDGAIPEVDEEG---RLRLDDWELRPDVQAAVRELWPQ 352 (398)
T ss_pred HHHhc-ccCCCCCCcCCcC---CcccchhhcCHHHHHHHHHHHHH
Confidence 65532 1112221123211 246667777777764 45654
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=154.89 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=121.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|+++||||++|||+++|+.|+++|+ +|++++|+.+..+...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 9999999987777766666555667788999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-----CCceEEEEecccccc
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-----PSKRLIIVGSITGNT 231 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-----~~g~iV~vSS~~~~~ 231 (399)
+|++|++|||||+......+.+.+.++ ++ .+|+.+.+.+++.+.+.|.+++. +.||+..|||.+..+
T Consensus 91 ~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T PRK06720 91 FSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQSF 162 (169)
T ss_pred cCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccccc
Confidence 999999999999976555665545555 33 67888889999999999887643 458999999877653
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=164.60 Aligned_cols=240 Identities=19% Similarity=0.154 Sum_probs=167.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHH--HHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+||||+|.||.+|++.|+++| +.|..+.|++++.+. ...+++..+.+...+..|+.|+++++++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 67899999999999999999999999 699999999876444 355555555679999999999999999987
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC----C
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN----V 238 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~----~ 238 (399)
++|+|+|.|...... . + +.-.+.+++.+.|+.++++++...- + -.|||++||.++........ .
T Consensus 78 -gcdgVfH~Asp~~~~----~-~-~~e~~li~pav~Gt~nVL~ac~~~~--s---VkrvV~TSS~aAv~~~~~~~~~~~v 145 (327)
T KOG1502|consen 78 -GCDGVFHTASPVDFD----L-E-DPEKELIDPAVKGTKNVLEACKKTK--S---VKRVVYTSSTAAVRYNGPNIGENSV 145 (327)
T ss_pred -CCCEEEEeCccCCCC----C-C-CcHHhhhhHHHHHHHHHHHHHhccC--C---cceEEEeccHHHhccCCcCCCCCcc
Confidence 699999999875321 1 1 1223789999999999999987653 1 13999999999875321100 1
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.....|++.+... .....|+.||.--+--+..++.+ .|+...+|+||+|-.|.+.....
T Consensus 146 vdE~~wsd~~~~~-----------------~~~~~Y~~sK~lAEkaAw~fa~e----~~~~lv~inP~lV~GP~l~~~l~ 204 (327)
T KOG1502|consen 146 VDEESWSDLDFCR-----------------CKKLWYALSKTLAEKAAWEFAKE----NGLDLVTINPGLVFGPGLQPSLN 204 (327)
T ss_pred cccccCCcHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHHh----CCccEEEecCCceECCCcccccc
Confidence 1111222221110 12257999998755555555544 48999999999999997765222
Q ss_pred hhhhhhchhhH----HHH--hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 319 PLFRLLFPPFQ----KYI--TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 319 ~~~~~~~~~~~----~~~--~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.........+. ..+ ...++..+|+|.+.++++..+.. .|+|+....
T Consensus 205 ~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~a--~GRyic~~~ 256 (327)
T KOG1502|consen 205 SSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEKPSA--KGRYICVGE 256 (327)
T ss_pred hhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcCccc--CceEEEecC
Confidence 21111111111 111 12258999999999999988865 699997655
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-19 Score=164.87 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=154.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH--HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++|++|||||+|+||+++++.|+++| +.|+++.|+.. ........+...+.++.++.+|++|.+++.+++.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~------ 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK------ 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc------
Confidence 46799999999999999999999999 59999888532 2222233332223468889999999998876654
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.+|+++|.++... +. ..++++++++|+.|++++++++.+.+. .++||++||.++....... .+..
T Consensus 78 -~~d~v~~~~~~~~------~~-~~~~~~~~~~nv~gt~~ll~aa~~~~~-----v~riV~~SS~~a~~~~~~~-~~~~- 142 (297)
T PLN02583 78 -GCSGLFCCFDPPS------DY-PSYDEKMVDVEVRAAHNVLEACAQTDT-----IEKVVFTSSLTAVIWRDDN-ISTQ- 142 (297)
T ss_pred -CCCEEEEeCccCC------cc-cccHHHHHHHHHHHHHHHHHHHHhcCC-----ccEEEEecchHheeccccc-CCCC-
Confidence 5889998765421 11 124678999999999999999987541 2599999998775311000 0000
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCC------hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFD------GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
.+..+..+.+ ....|+.||...+.+++.++++. |+++++|+|+.|.+|.....
T Consensus 143 -----------------~~~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~----gi~~v~lrp~~v~Gp~~~~~ 201 (297)
T PLN02583 143 -----------------KDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMDR----GVNMVSINAGLLMGPSLTQH 201 (297)
T ss_pred -----------------CCCCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHHh----CCcEEEEcCCcccCCCCCCc
Confidence 0011111111 11269999999888888776553 89999999999998854321
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
. +.......... .....++.++|+|++++..+..+. ..|.|+....
T Consensus 202 ~-~~~~~~~~~~~-~~~~~~v~V~Dva~a~~~al~~~~--~~~r~~~~~~ 247 (297)
T PLN02583 202 N-PYLKGAAQMYE-NGVLVTVDVNFLVDAHIRAFEDVS--SYGRYLCFNH 247 (297)
T ss_pred h-hhhcCCcccCc-ccCcceEEHHHHHHHHHHHhcCcc--cCCcEEEecC
Confidence 1 11110000000 001236889999999999987553 4567776544
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=171.05 Aligned_cols=228 Identities=18% Similarity=0.118 Sum_probs=154.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++||++|||||+|+||.++++.|+++| ++|++++|+..........+. .+.++.++.+|++|.+++.++++..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~----- 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPNLFELLN-LAKKIEDHFGDIRDAAKLRKAIAEF----- 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCCccchhHHHHHh-hcCCceEEEccCCCHHHHHHHHhhc-----
Confidence 467899999999999999999999999 589999987654333322222 1235778899999999999888863
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+|||+||.... ..+.+++...+++|+.+++++++++... .. .++||++||...+. ....
T Consensus 75 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~---~~--~~~iv~~SS~~vyg-~~~~------- 136 (349)
T TIGR02622 75 KPEIVFHLAAQPLV-----RKSYADPLETFETNVMGTVNLLEAIRAI---GS--VKAVVNVTSDKCYR-NDEW------- 136 (349)
T ss_pred CCCEEEECCccccc-----ccchhCHHHHHHHhHHHHHHHHHHHHhc---CC--CCEEEEEechhhhC-CCCC-------
Confidence 59999999996421 2355677889999999999999987532 11 25999999976542 1000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccC---CceEEEEeeCCcccCCCCccc--cc
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATTGLFRE--HI 318 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~---~gi~v~~v~PG~v~T~~~~~~--~~ 318 (399)
..+..+..+..+...|+.||.+.+.+++.++.++... +|+++++++|+.+.++..... ..
T Consensus 137 ---------------~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~ 201 (349)
T TIGR02622 137 ---------------VWGYRETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLI 201 (349)
T ss_pred ---------------CCCCccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhh
Confidence 0011122233456789999999999999998876322 389999999999998742111 11
Q ss_pred hhh-hhhch--h--hH-HHHhcCCCChHHHHHHHHHhhc
Q 015844 319 PLF-RLLFP--P--FQ-KYITKGYVSEDEAGKRLAQVVS 351 (399)
Q Consensus 319 ~~~-~~~~~--~--~~-~~~~~~~~~pee~a~~v~~l~~ 351 (399)
+.. ..... . +. ....+-++-.+|++++++.++.
T Consensus 202 ~~~~~~~~~g~~~~~~~g~~~rd~i~v~D~a~a~~~~~~ 240 (349)
T TIGR02622 202 PDVIRAFSSNKIVIIRNPDATRPWQHVLEPLSGYLLLAE 240 (349)
T ss_pred HHHHHHHhcCCCeEECCCCcccceeeHHHHHHHHHHHHH
Confidence 110 00000 0 00 0001224677899999887765
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=164.71 Aligned_cols=242 Identities=18% Similarity=0.138 Sum_probs=153.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++++||||+|+||.++++.|+++| ++|+++.|+....+........ ...++.++.+|++|.+++.++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE----- 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh-----
Confidence 457899999999999999999999999 5899888876544333222211 12468889999999998888776
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
.+|+|||+|+..... ..+...+.+++|+.|+.++++++.... + .++||++||...+....... .+.
T Consensus 77 --~~d~vih~A~~~~~~------~~~~~~~~~~~nv~gt~~ll~~~~~~~---~--v~rvV~~SS~~~~~~~~~~~-~~~ 142 (322)
T PLN02986 77 --GCDAVFHTASPVFFT------VKDPQTELIDPALKGTINVLNTCKETP---S--VKRVILTSSTAAVLFRQPPI-EAN 142 (322)
T ss_pred --CCCEEEEeCCCcCCC------CCCchhhhhHHHHHHHHHHHHHHHhcC---C--ccEEEEecchhheecCCccC-CCC
Confidence 489999999974211 112335678999999999999875421 1 24999999987642110000 000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
...+... + ..+. ....+...|+.||.+.+.+++.+.+++ |+++++++|+.|.+|..........
T Consensus 143 ~~~~E~~-----~----~~p~---~~~~~~~~Y~~sK~~aE~~~~~~~~~~----~~~~~~lrp~~v~Gp~~~~~~~~~~ 206 (322)
T PLN02986 143 DVVDETF-----F----SDPS---LCRETKNWYPLSKILAENAAWEFAKDN----GIDMVVLNPGFICGPLLQPTLNFSV 206 (322)
T ss_pred CCcCccc-----C----CChH---HhhccccchHHHHHHHHHHHHHHHHHh----CCeEEEEcccceeCCCCCCCCCccH
Confidence 0000000 0 0000 000123579999999888888776654 8999999999999985432110000
Q ss_pred hhhchhhHH-----HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 322 RLLFPPFQK-----YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 322 ~~~~~~~~~-----~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
..+...... .....++.++|+|++++.++..+.. .|.|..
T Consensus 207 ~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~~~--~~~yni 251 (322)
T PLN02986 207 ELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALETPSA--NGRYII 251 (322)
T ss_pred HHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCccc--CCcEEE
Confidence 101000000 0112367899999999999876532 455543
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-18 Score=164.97 Aligned_cols=239 Identities=15% Similarity=0.122 Sum_probs=154.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+.|++|||||+|.||.++++.|+++| ++|++++|+.............. ..++.++.+|++|.+.+.++++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~------ 76 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR------ 76 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh------
Confidence 46789999999999999999999999 59998888865544433322211 2357889999999998887765
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC-CC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP-PK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~-~~ 241 (399)
.+|+|||+|+.... . ..+.++..+++|+.|++++++++.+... .++||++||...+.+....... ..
T Consensus 77 -~~d~ViH~A~~~~~----~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~-----~~r~v~~SS~~~~~~~~~~~~~~~E 144 (351)
T PLN02650 77 -GCTGVFHVATPMDF----E--SKDPENEVIKPTVNGMLSIMKACAKAKT-----VRRIVFTSSAGTVNVEEHQKPVYDE 144 (351)
T ss_pred -CCCEEEEeCCCCCC----C--CCCchhhhhhHHHHHHHHHHHHHHhcCC-----ceEEEEecchhhcccCCCCCCccCc
Confidence 48999999986421 1 1122357789999999999999876531 1489999997554311000000 00
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~- 320 (399)
..+...+ ... ....+...|+.||.+.+.+++.++.++ |++++.++|+.|.+|.......+.
T Consensus 145 ~~~~~~~-------------~~~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~~~~~~~~ 206 (351)
T PLN02650 145 DCWSDLD-------------FCR-RKKMTGWMYFVSKTLAEKAAWKYAAEN----GLDFISIIPTLVVGPFISTSMPPSL 206 (351)
T ss_pred ccCCchh-------------hhh-ccccccchHHHHHHHHHHHHHHHHHHc----CCeEEEECCCceECCCCCCCCCccH
Confidence 0000000 000 011123579999999999998887664 899999999999998543211111
Q ss_pred hhhhc---h---hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 321 FRLLF---P---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 321 ~~~~~---~---~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
...+. . .......+.++.++|+|++++.++..+. ..|.|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~l~~~~--~~~~~i 252 (351)
T PLN02650 207 ITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFLFEHPA--AEGRYI 252 (351)
T ss_pred HHHHHHhcCCccccCcCCCcceeeHHHHHHHHHHHhcCcC--cCceEE
Confidence 11000 0 0000011347899999999999987643 245664
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=162.91 Aligned_cols=236 Identities=18% Similarity=0.159 Sum_probs=154.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHH-HHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER-AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++++++||||+|+||.++++.|+++| +.|+++.|+.+.... ....+.....++.++.+|++|.+++.++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------ 80 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG-YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID------ 80 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh------
Confidence 457899999999999999999999999 599999997654221 122222222457889999999999888775
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.+|+|||+|+... +++.+.+++|+.|+.++++++.... -++||++||..+..+..... + ..
T Consensus 81 -~~d~Vih~A~~~~----------~~~~~~~~~nv~gt~~ll~aa~~~~------v~r~V~~SS~~avyg~~~~~-~-~~ 141 (342)
T PLN02214 81 -GCDGVFHTASPVT----------DDPEQMVEPAVNGAKFVINAAAEAK------VKRVVITSSIGAVYMDPNRD-P-EA 141 (342)
T ss_pred -cCCEEEEecCCCC----------CCHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEeccceeeeccCCCC-C-Cc
Confidence 5999999998631 2356789999999999999886531 24899999986654321100 0 00
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
..+... + . ....+..+...|+.||.+.+.+++.++.++ |+++++++|+.|..|...........
T Consensus 142 ~~~E~~-~----~-------~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----g~~~v~lRp~~vyGp~~~~~~~~~~~ 205 (342)
T PLN02214 142 VVDESC-W----S-------DLDFCKNTKNWYCYGKMVAEQAAWETAKEK----GVDLVVLNPVLVLGPPLQPTINASLY 205 (342)
T ss_pred ccCccc-C----C-------ChhhccccccHHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCCCCCCCchHH
Confidence 000000 0 0 000011234679999999999988887664 89999999999988854321111000
Q ss_pred hhchhhH----HH--HhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 323 LLFPPFQ----KY--ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 323 ~~~~~~~----~~--~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
.+...+. .. ..+.++..+|+|++++.++..+. ..|.|+.
T Consensus 206 ~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~~--~~g~yn~ 250 (342)
T PLN02214 206 HVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPS--ASGRYLL 250 (342)
T ss_pred HHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCcc--cCCcEEE
Confidence 0000000 00 01235789999999999887642 3466653
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=163.39 Aligned_cols=246 Identities=16% Similarity=0.136 Sum_probs=155.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+++++|||||+|+||.++++.|+++| ++|++++|+....+.....+.. +.++.++.+|++|.+++.++++ .
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVK-------G 79 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHc-------C
Confidence 56789999999999999999999999 5999988987655554444432 3568889999999998887764 4
Q ss_pred ccEEEecCcccCCCCCCCCCChhhh--hHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC-CCCC
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGF--ELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN-VPPK 241 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~--~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~-~~~~ 241 (399)
+|+|||+|+...........+++.+ ..++++|+.|+.++++++.+... .++||++||.+.+.+..... ....
T Consensus 80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~-----~~~~v~~SS~~vyg~~~~~~~~~~~ 154 (353)
T PLN02896 80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKT-----VKRVVFTSSISTLTAKDSNGRWRAV 154 (353)
T ss_pred CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCC-----ccEEEEEechhhccccccCCCCCCc
Confidence 8999999997533211112233333 45677888999999998876421 24899999987653110000 0000
Q ss_pred CCccccccccCCCCCCCCCCCCC-CCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMID-GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
...+. ..+..+ ..+.++...|+.||.+.+.+++.+++++ |+++++++|+.|..|.........
T Consensus 155 ~~E~~------------~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~~~~~~~ 218 (353)
T PLN02896 155 VDETC------------QTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN----GIDLVSVITTTVAGPFLTPSVPSS 218 (353)
T ss_pred cCccc------------CCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc----CCeEEEEcCCcccCCCcCCCCCch
Confidence 00000 000000 0011234579999999999988887664 899999999999988543221111
Q ss_pred hhhhchhhHH----HH----------hcCCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 321 FRLLFPPFQK----YI----------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 321 ~~~~~~~~~~----~~----------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
...+...+.. .+ ..-++..+|+|++++.++..+. ..|.|+
T Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~--~~~~~~ 272 (353)
T PLN02896 219 IQVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTK--AEGRYI 272 (353)
T ss_pred HHHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCC--cCccEE
Confidence 1111100000 00 0135789999999999886532 235554
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=159.61 Aligned_cols=233 Identities=13% Similarity=0.074 Sum_probs=148.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-----HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
+.+++++|||||+|+||.++++.|+++| ++|++++|+... ++.........+.++.++.+|++|.+++.++++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD 81 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence 4678899999999999999999999999 589988886432 2211111111234688999999999999998886
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+ ++|+|||+|+..... ...+..+..+++|+.|+.++++++.+.+.+.+ .-.++|++||...+ |....
T Consensus 82 ~-----~~d~Vih~A~~~~~~-----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~-~~~~~v~~Ss~~vy-g~~~~- 148 (340)
T PLN02653 82 I-----KPDEVYNLAAQSHVA-----VSFEMPDYTADVVATGALRLLEAVRLHGQETG-RQIKYYQAGSSEMY-GSTPP- 148 (340)
T ss_pred c-----CCCEEEECCcccchh-----hhhhChhHHHHHHHHHHHHHHHHHHHhccccc-cceeEEEeccHHHh-CCCCC-
Confidence 4 599999999975321 23345677889999999999999988765421 01278888886543 21100
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc--CCceEEEEeeCCcccCCCCcc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+..+..+..+...|+.||.+.+.+++.++.++.- ..++.++.+.||...+ .+..
T Consensus 149 -----------------------~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~-~~~~ 204 (340)
T PLN02653 149 -----------------------PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGEN-FVTR 204 (340)
T ss_pred -----------------------CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcc-cchh
Confidence 1112233445678999999999999998877621 1233444555653322 1110
Q ss_pred ccchhhhhhch-----hh-H-HHHhcCCCChHHHHHHHHHhhcCC
Q 015844 316 EHIPLFRLLFP-----PF-Q-KYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 316 ~~~~~~~~~~~-----~~-~-~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
........+.. .+ . ....+-++-.+|+|++++.++...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~ 249 (340)
T PLN02653 205 KITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQE 249 (340)
T ss_pred HHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcC
Confidence 00000000000 00 0 000123578999999999988653
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-18 Score=166.27 Aligned_cols=206 Identities=15% Similarity=0.136 Sum_probs=136.1
Q ss_pred CcCccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HH--------------HHHHHHHh-ccCCCcEE
Q 015844 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LK--------------AERAAKSA-GMAKENYT 139 (399)
Q Consensus 78 ~~~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~--------------~~~~~~~~-~~~~~~~~ 139 (399)
+.....++++++|||||+|+||+++++.|+++|+ .|++++|.. .. .+.+ +.+ ...+.++.
T Consensus 39 ~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~v~ 116 (442)
T PLN02572 39 PGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNLCRRLFDHQLGLDSLTPIASIHERV-RRWKEVSGKEIE 116 (442)
T ss_pred CCCCccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeccccccccccccccccccccchHHHH-HHHHHhhCCcce
Confidence 3334577889999999999999999999999994 888876421 00 0111 111 11134688
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCc
Q 015844 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK 219 (399)
Q Consensus 140 ~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g 219 (399)
++.+|++|.+.+.++++.. ++|+|||+|+... ......++++++..+++|+.|++++++++...-. ..
T Consensus 117 ~v~~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~--~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv-----~~ 184 (442)
T PLN02572 117 LYVGDICDFEFLSEAFKSF-----EPDAVVHFGEQRS--APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAP-----DC 184 (442)
T ss_pred EEECCCCCHHHHHHHHHhC-----CCCEEEECCCccc--ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCC-----Cc
Confidence 9999999999999888863 6999999997642 2233345566778889999999999998866421 13
Q ss_pred eEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceE
Q 015844 220 RLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA 299 (399)
Q Consensus 220 ~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~ 299 (399)
+||++||...+ |.... +-... .+. .+.. ........+..+...|+.||.+.+.+.+.++..+ |+.
T Consensus 185 ~~V~~SS~~vY-G~~~~--~~~E~--~i~-----~~~~-~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~----gl~ 249 (442)
T PLN02572 185 HLVKLGTMGEY-GTPNI--DIEEG--YIT-----ITHN-GRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIR 249 (442)
T ss_pred cEEEEecceec-CCCCC--CCccc--ccc-----cccc-cccccccCCCCCCCcchhHHHHHHHHHHHHHHhc----CCC
Confidence 89999998654 21100 00000 000 0000 0000000122345679999999888888777664 899
Q ss_pred EEEeeCCcccCCC
Q 015844 300 FASLYPGCIATTG 312 (399)
Q Consensus 300 v~~v~PG~v~T~~ 312 (399)
+.++.|+.|..++
T Consensus 250 ~v~lR~~~vyGp~ 262 (442)
T PLN02572 250 ATDLNQGVVYGVR 262 (442)
T ss_pred EEEEecccccCCC
Confidence 9999999998875
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=158.55 Aligned_cols=226 Identities=13% Similarity=0.155 Sum_probs=149.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH--HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+++|||||+|+||.++++.|+++|...|++.+|.... ..... .+ ..+.++.++.+|++|.++++++++.. +
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 74 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLA-PV-AQSERFAFEKVDICDRAELARVFTEH-----Q 74 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhh-hc-ccCCceEEEECCCcChHHHHHHHhhc-----C
Confidence 5799999999999999999999995335455554221 11111 11 12246778899999999998888752 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhh---CCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQ---SDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~---~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+|||+||.... ..+.++++..+++|+.|++++++++.+.+.. ...+..++|++||.+.+. ....
T Consensus 75 ~D~Vih~A~~~~~-----~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg-~~~~----- 143 (355)
T PRK10217 75 PDCVMHLAAESHV-----DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYG-DLHS----- 143 (355)
T ss_pred CCEEEECCcccCc-----chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcC-CCCC-----
Confidence 9999999997522 2345677899999999999999999875321 111124899999876431 1000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc-cchh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HIPL 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~-~~~~ 320 (399)
...+..+..+..+...|+.||.+.+.+++.+++++ ++++..+.|+.|..|..... ..+.
T Consensus 144 ----------------~~~~~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~~~~~~~~~~ 203 (355)
T PRK10217 144 ----------------TDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY----GLPTLITNCSNNYGPYHFPEKLIPL 203 (355)
T ss_pred ----------------CCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCCcccHHHH
Confidence 00011222234456789999999999999988775 78899999999987743211 1110
Q ss_pred hhhhchhhH--HHH-------hcCCCChHHHHHHHHHhhcC
Q 015844 321 FRLLFPPFQ--KYI-------TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 321 ~~~~~~~~~--~~~-------~~~~~~pee~a~~v~~l~~~ 352 (399)
.+..... ..+ ...++..+|+++++..++..
T Consensus 204 --~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~ 242 (355)
T PRK10217 204 --MILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATT 242 (355)
T ss_pred --HHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhc
Confidence 0010010 001 12367899999999888765
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=157.89 Aligned_cols=239 Identities=15% Similarity=0.112 Sum_probs=151.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH--HHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA--KSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~--~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++++|||||+|+||.++++.|+++|+ +|+++.|+........ ..+.. ..++.++.+|++|.+++.++++
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~----- 79 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRDPENQKKIAHLRALQE-LGDLKIFGADLTDEESFEAPIA----- 79 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHhcCC-CCceEEEEcCCCChHHHHHHHh-----
Confidence 4578999999999999999999999994 8988888754332221 11211 1357889999999998887765
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC--CCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA--GNVP 239 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~--~~~~ 239 (399)
++|+|||+|+... .. ..+.+...+++|+.|+.++++++.+.. + .++||++||.+.+..... ...+
T Consensus 80 --~~d~vih~A~~~~----~~--~~~~~~~~~~~nv~g~~~ll~a~~~~~---~--~~~~v~~SS~~~~g~~~~~~~~~~ 146 (338)
T PLN00198 80 --GCDLVFHVATPVN----FA--SEDPENDMIKPAIQGVHNVLKACAKAK---S--VKRVILTSSAAAVSINKLSGTGLV 146 (338)
T ss_pred --cCCEEEEeCCCCc----cC--CCChHHHHHHHHHHHHHHHHHHHHhcC---C--ccEEEEeecceeeeccCCCCCCce
Confidence 5899999998531 11 123345678999999999999986642 1 259999999876531100 0000
Q ss_pred -CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 240 -PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
....+.. ........++...|+.||.+.+.+++.++.++ |+++++++|+.|..|.......
T Consensus 147 ~~E~~~~~--------------~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~R~~~vyGp~~~~~~~ 208 (338)
T PLN00198 147 MNEKNWTD--------------VEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGPSLTSDIP 208 (338)
T ss_pred eccccCCc--------------hhhhhhcCCccchhHHHHHHHHHHHHHHHHhc----CceEEEEeCCceECCCccCCCC
Confidence 0000000 00000112356679999999999988887664 8999999999999885322111
Q ss_pred hhhhh----hc-hhh-----HHHH----hcCCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 319 PLFRL----LF-PPF-----QKYI----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 319 ~~~~~----~~-~~~-----~~~~----~~~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
..... +. ..+ .... ...++.++|++++++.++.... ..|.|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~--~~~~~~ 264 (338)
T PLN00198 209 SSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKES--ASGRYI 264 (338)
T ss_pred CcHHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcC--cCCcEE
Confidence 10000 00 000 0000 0246889999999999887643 235554
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=157.02 Aligned_cols=234 Identities=18% Similarity=0.150 Sum_probs=149.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc--cCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++|++|||||+|+||.+++++|+++| +.|+++.|+............ ....++.++.+|++|.+.+..+++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD------ 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC-CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc------
Confidence 36899999999999999999999999 599988887644322221111 112468899999999988877765
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc-cCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN-TNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~-~~~~~~~~~~~ 241 (399)
.+|+|||+|+..... ..+.....+++|+.|+.++++++.... + ..+||++||.+.. .+.... .+ .
T Consensus 76 -~~d~Vih~A~~~~~~------~~~~~~~~~~~nv~gt~~ll~a~~~~~---~--~~~~v~~SS~~~~~y~~~~~-~~-~ 141 (322)
T PLN02662 76 -GCEGVFHTASPFYHD------VTDPQAELIDPAVKGTLNVLRSCAKVP---S--VKRVVVTSSMAAVAYNGKPL-TP-D 141 (322)
T ss_pred -CCCEEEEeCCcccCC------CCChHHHHHHHHHHHHHHHHHHHHhCC---C--CCEEEEccCHHHhcCCCcCC-CC-C
Confidence 589999999964211 111224788999999999999876532 1 2489999998643 211000 00 0
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCC------hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFD------GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
.+..+..+.. ....|+.+|.+.+.+++.+.+++ |++++.++|+.+.+|....
T Consensus 142 ------------------~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lRp~~v~Gp~~~~ 199 (322)
T PLN02662 142 ------------------VVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN----GIDMVTINPAMVIGPLLQP 199 (322)
T ss_pred ------------------CcCCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCcccCCCCCC
Confidence 0011111111 12479999999888887776654 8999999999999885322
Q ss_pred ccchhhhhhchhhH---HHH--hcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 316 EHIPLFRLLFPPFQ---KYI--TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 316 ~~~~~~~~~~~~~~---~~~--~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
........+...+. ..+ ...++.++|+|++++.++..+.. .|.|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~ 250 (322)
T PLN02662 200 TLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEIPSA--SGRYCL 250 (322)
T ss_pred CCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcCcCc--CCcEEE
Confidence 11100011111100 001 12368899999999998876532 355543
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=157.01 Aligned_cols=225 Identities=17% Similarity=0.173 Sum_probs=175.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..+.||++|||||+|.||.++++++++.+..++++.+|++.+.-....++... ..++.++-+|+.|.+.++++++..
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~- 324 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH- 324 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-
Confidence 36899999999999999999999999999899999999998888888777653 467889999999999999998854
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++|+|+|.|+.- .-|+ -+....+.+.+|++|+.++++++...-.+ ++|++|+--+.
T Consensus 325 ----kvd~VfHAAA~K--HVPl---~E~nP~Eai~tNV~GT~nv~~aa~~~~V~------~~V~iSTDKAV--------- 380 (588)
T COG1086 325 ----KVDIVFHAAALK--HVPL---VEYNPEEAIKTNVLGTENVAEAAIKNGVK------KFVLISTDKAV--------- 380 (588)
T ss_pred ----CCceEEEhhhhc--cCcc---hhcCHHHHHHHhhHhHHHHHHHHHHhCCC------EEEEEecCccc---------
Confidence 799999999874 2333 34456778999999999999999877554 89999986554
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
.+...|++||...+.++.+++.+. ...+-++.+|.-|.|... .....|
T Consensus 381 -----------------------------~PtNvmGaTKr~aE~~~~a~~~~~-~~~~T~f~~VRFGNVlGS--rGSViP 428 (588)
T COG1086 381 -----------------------------NPTNVMGATKRLAEKLFQAANRNV-SGTGTRFCVVRFGNVLGS--RGSVIP 428 (588)
T ss_pred -----------------------------CCchHhhHHHHHHHHHHHHHhhcc-CCCCcEEEEEEecceecC--CCCCHH
Confidence 467799999999999999999876 333789999999999764 334455
Q ss_pred hhhhhchhh---H---HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLLFPPF---Q---KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~~~~~---~---~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.++.+...- . ....+-+++..|+++.++..... ..+|..+..|.
T Consensus 429 lFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~---~~gGeifvldM 478 (588)
T COG1086 429 LFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAGAI---AKGGEIFVLDM 478 (588)
T ss_pred HHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHHhh---cCCCcEEEEcC
Confidence 544333211 0 01123357899999999887654 35677665554
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-16 Score=150.34 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=118.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-----HHHHHHHh-ccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-----~~~~~~~~-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
|++|||||+|+||.+++++|+++| +.|++++|+... .+...+.. ...+.++.++.+|++|.+++.++++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI-- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC--
Confidence 589999999999999999999999 599999887531 22111111 111345889999999999999888864
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+|||+|+..... ...+.-...+++|+.|+.++++++.+.-.+. ..++|++||...+ |....
T Consensus 78 ---~~d~ViH~Aa~~~~~-----~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~---~~~~v~~SS~~vy-g~~~~---- 141 (343)
T TIGR01472 78 ---KPTEIYNLAAQSHVK-----VSFEIPEYTADVDGIGTLRLLEAVRTLGLIK---SVKFYQASTSELY-GKVQE---- 141 (343)
T ss_pred ---CCCEEEECCcccccc-----hhhhChHHHHHHHHHHHHHHHHHHHHhCCCc---CeeEEEeccHHhh-CCCCC----
Confidence 589999999975321 1223345677899999999999988752221 1379999997654 21100
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 292 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~ 292 (399)
.+..+..+..+...|+.||.+.+.+++.++.++
T Consensus 142 -------------------~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 174 (343)
T TIGR01472 142 -------------------IPQNETTPFYPRSPYAAAKLYAHWITVNYREAY 174 (343)
T ss_pred -------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 011222344566789999999999999988775
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-16 Score=149.06 Aligned_cols=234 Identities=14% Similarity=0.101 Sum_probs=147.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc------CCCcEEEEEecCCCHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dvs~~~~v~~~~ 155 (399)
...++|++|||||+|+||.++++.|+++| +.|+++.|+....+.+. .+.. ....+.++.+|++|.+++.+++
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r~~~~~~~l~-~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVDTQEDKEKLR-EMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 35678999999999999999999999999 49988888865544432 2211 0125788999999999988887
Q ss_pred HHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc-ccCCC
Q 015844 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTL 234 (399)
Q Consensus 156 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~-~~~~~ 234 (399)
+ .+|.+||.|+...... . ........++|+.++.++++++...- + -.++|++||.++ .++..
T Consensus 127 ~-------~~d~V~hlA~~~~~~~-~----~~~~~~~~~~nv~gt~~llea~~~~~---~--v~r~V~~SS~~~~vyg~~ 189 (367)
T PLN02686 127 D-------GCAGVFHTSAFVDPAG-L----SGYTKSMAELEAKASENVIEACVRTE---S--VRKCVFTSSLLACVWRQN 189 (367)
T ss_pred H-------hccEEEecCeeecccc-c----ccccchhhhhhHHHHHHHHHHHHhcC---C--ccEEEEeccHHHhccccc
Confidence 6 3789999998753221 1 01113456789999999998865421 1 138999999752 22110
Q ss_pred -CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 235 -AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
....+...+.+. ...+..+..+...|+.||.+.+.+++.++.+. |+++++|+|+.|.+|..
T Consensus 190 ~~~~~~~~i~E~~--------------~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gl~~v~lRp~~vyGp~~ 251 (367)
T PLN02686 190 YPHDLPPVIDEES--------------WSDESFCRDNKLWYALGKLKAEKAAWRAARGK----GLKLATICPALVTGPGF 251 (367)
T ss_pred CCCCCCcccCCCC--------------CCChhhcccccchHHHHHHHHHHHHHHHHHhc----CceEEEEcCCceECCCC
Confidence 000000000000 00000122344579999999999998877663 89999999999999864
Q ss_pred ccccch-hhhhhchhhHHHH--hcCCCChHHHHHHHHHhhcC
Q 015844 314 FREHIP-LFRLLFPPFQKYI--TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~~~--~~~~~~pee~a~~v~~l~~~ 352 (399)
...... ....+...+.... ...++..+|++++++.++..
T Consensus 252 ~~~~~~~~~~~~~g~~~~~g~g~~~~v~V~Dva~A~~~al~~ 293 (367)
T PLN02686 252 FRRNSTATIAYLKGAQEMLADGLLATADVERLAEAHVCVYEA 293 (367)
T ss_pred CCCCChhHHHHhcCCCccCCCCCcCeEEHHHHHHHHHHHHhc
Confidence 321111 1111111000001 11257899999999888864
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=139.75 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=171.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+++|||||.|.||.++++.+.++.. .+|+.++.-. ...+.+.... ...++.++++|++|.+.+.+++++.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~--~~~~~~fv~~DI~D~~~v~~~~~~~----- 73 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE--DSPRYRFVQGDICDRELVDRLFKEY----- 73 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhh--cCCCceEEeccccCHHHHHHHHHhc-----
Confidence 4689999999999999999998764 3467766521 1122222211 2358999999999999999998864
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+|||-|+-.+.+. +.++....+++|+.|+++|++++..+..+ -|++.||.--.+ |.+.
T Consensus 74 ~~D~VvhfAAESHVDR-----SI~~P~~Fi~TNv~GT~~LLEaar~~~~~-----frf~HISTDEVY-G~l~-------- 134 (340)
T COG1088 74 QPDAVVHFAAESHVDR-----SIDGPAPFIQTNVVGTYTLLEAARKYWGK-----FRFHHISTDEVY-GDLG-------- 134 (340)
T ss_pred CCCeEEEechhccccc-----cccChhhhhhcchHHHHHHHHHHHHhccc-----ceEEEecccccc-cccc--------
Confidence 6999999999875443 55556677899999999999999888643 289999876543 2211
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc-chhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPLFR 322 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~ 322 (399)
.+...+.|..++.+.++|++||++-++|++++.+-+ |+.++..++..--.|-.+.+. .|..
T Consensus 135 -------------~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TY----glp~~ItrcSNNYGPyqfpEKlIP~~- 196 (340)
T COG1088 135 -------------LDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY----GLPATITRCSNNYGPYQFPEKLIPLM- 196 (340)
T ss_pred -------------CCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHc----CCceEEecCCCCcCCCcCchhhhHHH-
Confidence 112245667788999999999999999999999987 899998888776666322221 1110
Q ss_pred hhchhhH--HHH-------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHHH
Q 015844 323 LLFPPFQ--KYI-------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISE 393 (399)
Q Consensus 323 ~~~~~~~--~~~-------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~ 393 (399)
+...+. ..| .+-++-++|=+.++-.++.... -|..+.++|. .+..+.+..+.+-+.+.
T Consensus 197 -I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~---~GE~YNIgg~---------~E~~Nlevv~~i~~~l~ 263 (340)
T COG1088 197 -IINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGK---IGETYNIGGG---------NERTNLEVVKTICELLG 263 (340)
T ss_pred -HHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCc---CCceEEeCCC---------ccchHHHHHHHHHHHhC
Confidence 000010 001 1225678999999888887743 3888888774 22344455555444443
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=147.96 Aligned_cols=220 Identities=14% Similarity=0.158 Sum_probs=146.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+++||||+|+||.+++++|+++|. .+|++.+|.. ...+.. +.+.. ..++.++.+|++|++++.++++.. +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENL-ADLED-NPRYRFVKGDIGDRELVSRLFTEH-----Q 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhh-hhhcc-CCCcEEEEcCCcCHHHHHHHHhhc-----C
Confidence 489999999999999999999872 3788777632 111111 12211 235788899999999998888753 5
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+|+.... +.+.+.++..+++|+.++.++++++...+.+ .++|++||...+. .....
T Consensus 74 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~i~~Ss~~v~g-~~~~~------- 135 (317)
T TIGR01181 74 PDAVVHFAAESHV-----DRSISGPAAFIETNVVGTYTLLEAVRKYWHE-----FRFHHISTDEVYG-DLEKG------- 135 (317)
T ss_pred CCEEEEcccccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-----ceEEEeeccceeC-CCCCC-------
Confidence 9999999997532 2244567788999999999999987665432 4899999966432 11000
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc-cchhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HIPLFRL 323 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~ 323 (399)
.+..+..+..+...|+.+|.+.+.+++.++.++ ++++.++.|+.+..+..... ..+. .
T Consensus 136 ---------------~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~R~~~i~G~~~~~~~~~~~--~ 194 (317)
T TIGR01181 136 ---------------DAFTETTPLAPSSPYSASKAASDHLVRAYHRTY----GLPALITRCSNNYGPYQFPEKLIPL--M 194 (317)
T ss_pred ---------------CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCCCCcccHHHH--H
Confidence 011122233445689999999999999888775 89999999999887643211 1110 0
Q ss_pred hchhhHH--HH-------hcCCCChHHHHHHHHHhhcCC
Q 015844 324 LFPPFQK--YI-------TKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 324 ~~~~~~~--~~-------~~~~~~pee~a~~v~~l~~~~ 353 (399)
+...... .+ ...++..+|+++.+..++...
T Consensus 195 ~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 195 ITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 0000000 00 112567899999999888653
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=149.76 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=129.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHH----HHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA----ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.|++|++|||||+|+||.++++.|+++| +.|++++|..... ..........+.++.++.+|++|++++..+++..
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 5678999999999999999999999999 5898887643211 1222111112346788999999999998887752
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+|+|||+|+.... ..+.+++...+++|+.++.++++++... + .++||++||...+ +...
T Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~vy-g~~~--- 140 (352)
T PLN02240 81 -----RFDAVIHFAGLKAV-----GESVAKPLLYYDNNLVGTINLLEVMAKH----G--CKKLVFSSSATVY-GQPE--- 140 (352)
T ss_pred -----CCCEEEEccccCCc-----cccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEccHHHh-CCCC---
Confidence 69999999997522 1234567889999999999999865432 1 2489999996433 2100
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
..+..+..+..+...|+.||.+.+.+++.++.+. .++++..+.|+.+..
T Consensus 141 --------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~~R~~~v~G 189 (352)
T PLN02240 141 --------------------EVPCTEEFPLSATNPYGRTKLFIEEICRDIHASD---PEWKIILLRYFNPVG 189 (352)
T ss_pred --------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCCEEEEeecCcCC
Confidence 0112222344456789999999999998887552 367777777765543
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=147.97 Aligned_cols=235 Identities=16% Similarity=0.196 Sum_probs=147.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++|||||+|+||.++++.|+++|...|+.+++.. ...+... .+. .+.++.++.+|++|.+++.+++++. ++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 74 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DVS-DSERYVFEHADICDRAELDRIFAQH-----QP 74 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hcc-cCCceEEEEecCCCHHHHHHHHHhc-----CC
Confidence 5899999999999999999999954455555432 1122221 111 1345778999999999999888752 69
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC---CCceEEEEeccccccCCCCCCCCCCC
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---PSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~---~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+|||+||..... ......+..+++|+.|+.++++++.+.|..... ...++|++||...+. .... +..
T Consensus 75 d~vih~A~~~~~~-----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg-~~~~--~~~- 145 (352)
T PRK10084 75 DAVMHLAAESHVD-----RSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYG-DLPH--PDE- 145 (352)
T ss_pred CEEEECCcccCCc-----chhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcC-CCCc--ccc-
Confidence 9999999975321 122345678999999999999999887542210 124899999876542 1000 000
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc-cchhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HIPLF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~ 321 (399)
.. ......+..+..+..+...|+.||.+.+.+++.++.++ |+++..+.|+.|..|..... ..+..
T Consensus 146 ----~~------~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~vilr~~~v~Gp~~~~~~~~~~~ 211 (352)
T PRK10084 146 ----VE------NSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY----GLPTIVTNCSNNYGPYHFPEKLIPLV 211 (352)
T ss_pred ----cc------ccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeccceeCCCcCccchHHHH
Confidence 00 00000112233344566789999999999999988775 78888889988887743211 11110
Q ss_pred -hhhc--hh---hHH-HHhcCCCChHHHHHHHHHhhcC
Q 015844 322 -RLLF--PP---FQK-YITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 322 -~~~~--~~---~~~-~~~~~~~~pee~a~~v~~l~~~ 352 (399)
.... .. +.. .....++.++|+++++..++..
T Consensus 212 ~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~ 249 (352)
T PRK10084 212 ILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTE 249 (352)
T ss_pred HHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhc
Confidence 0000 00 000 0012257899999999888764
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-16 Score=149.37 Aligned_cols=224 Identities=11% Similarity=0.016 Sum_probs=145.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh----cc-CCCcEEEEEecCCCHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA----GM-AKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~----~~-~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
..++++++|||||+|.||..++++|+++| +.|++++|............ .. ...++.++.+|+.|.+.+..+++
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 35677899999999999999999999999 59999988543211111111 11 11357889999999988777765
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
.+|+|||.|+..... .+.++....+++|+.|+.++++++... + -.++|++||...+. ....
T Consensus 90 -------~~d~ViHlAa~~~~~-----~~~~~~~~~~~~Nv~gt~nll~~~~~~----~--~~~~v~~SS~~vyg-~~~~ 150 (348)
T PRK15181 90 -------NVDYVLHQAALGSVP-----RSLKDPIATNSANIDGFLNMLTAARDA----H--VSSFTYAASSSTYG-DHPD 150 (348)
T ss_pred -------CCCEEEECccccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEeechHhhC-CCCC
Confidence 489999999974321 122344567999999999999987543 1 23899999976542 1000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
.+..+..+..+...|+.||.+.+.+++.++.++ |+++..+.|+.|..|.....
T Consensus 151 -----------------------~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lR~~~vyGp~~~~~ 203 (348)
T PRK15181 151 -----------------------LPKIEERIGRPLSPYAVTKYVNELYADVFARSY----EFNAIGLRYFNVFGRRQNPN 203 (348)
T ss_pred -----------------------CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCcCCCCC
Confidence 001111122344579999999998887776553 89999999999988743211
Q ss_pred cc--hh-hhhhchhhH----HHH-----hcCCCChHHHHHHHHHhhcC
Q 015844 317 HI--PL-FRLLFPPFQ----KYI-----TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 317 ~~--~~-~~~~~~~~~----~~~-----~~~~~~pee~a~~v~~l~~~ 352 (399)
.. .. ...+..... ... .+-++..+|+|++++.++..
T Consensus 204 ~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~ 251 (348)
T PRK15181 204 GAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATT 251 (348)
T ss_pred CccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhc
Confidence 10 00 011111110 000 12246799999998876643
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=145.26 Aligned_cols=221 Identities=20% Similarity=0.138 Sum_probs=147.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+++||||+|+||..+++.|+++| ++|++++|+....... . ...+.++.+|++|.+++.++++ .+|+
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~----~--~~~~~~~~~D~~~~~~l~~~~~-------~~d~ 67 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDRRNL----E--GLDVEIVEGDLRDPASLRKAVA-------GCRA 67 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEecCcccccc----c--cCCceEEEeeCCCHHHHHHHHh-------CCCE
Confidence 69999999999999999999999 5999999976543211 1 1257789999999998887765 5899
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+|+.... ..++++..+++|+.++.++++++.... .++||++||...+.....+ .
T Consensus 68 vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~v~~SS~~~~~~~~~~-~--------- 124 (328)
T TIGR03466 68 LFHVAADYRL-------WAPDPEEMYAANVEGTRNLLRAALEAG------VERVVYTSSVATLGVRGDG-T--------- 124 (328)
T ss_pred EEEeceeccc-------CCCCHHHHHHHHHHHHHHHHHHHHHhC------CCeEEEEechhhcCcCCCC-C---------
Confidence 9999986411 223467789999999999999876431 2499999998765211000 0
Q ss_pred ccccCCCCCCCCCCCCCCCC---CChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 248 RGFAGGLNGLNSSSMIDGGD---FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
+..+..+ ......|+.+|.+.+.+++.++.+. |+++..++|+.+..+...... .....+
T Consensus 125 -------------~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilR~~~~~G~~~~~~~-~~~~~~ 186 (328)
T TIGR03466 125 -------------PADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEK----GLPVVIVNPSTPIGPRDIKPT-PTGRII 186 (328)
T ss_pred -------------CcCccCCCCcccccChHHHHHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCCCCCCC-cHHHHH
Confidence 0011111 1123579999999999988877653 899999999998776322111 110111
Q ss_pred chhhH-HHH-----hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 325 FPPFQ-KYI-----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 325 ~~~~~-~~~-----~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..... ..+ ...++..+|+|++++.++... ..|.++..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~---~~~~~~~~~~ 231 (328)
T TIGR03466 187 VDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERG---RIGERYILGG 231 (328)
T ss_pred HHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCC---CCCceEEecC
Confidence 10000 000 112567999999998887653 3566555554
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=148.36 Aligned_cols=217 Identities=17% Similarity=0.189 Sum_probs=145.9
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcE----EEEEecCCCHHHHHHHHHHHHHcC
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENY----TIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~----~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|||||+|.||.+++++|++.+..++++++|++..+-.+.+++.. .+.++ ..+.+|++|.+.+..++++.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~---- 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY---- 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence 699999999999999999999988999999999998888888742 12233 34578999999999988754
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++|+|+|.|+.-+ -++ -++...+.+++|+.|+.++++++..+-. .++|++|+--+.
T Consensus 77 -~pdiVfHaAA~Kh--Vpl---~E~~p~eav~tNv~GT~nv~~aa~~~~v------~~~v~ISTDKAv------------ 132 (293)
T PF02719_consen 77 -KPDIVFHAAALKH--VPL---MEDNPFEAVKTNVLGTQNVAEAAIEHGV------ERFVFISTDKAV------------ 132 (293)
T ss_dssp -T-SEEEE--------HHH---HCCCHHHHHHHHCHHHHHHHHHHHHTT-------SEEEEEEECGCS------------
T ss_pred -CCCEEEEChhcCC--CCh---HHhCHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEccccccC------------
Confidence 7999999998742 222 2345678899999999999999987643 399999986554
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.+...|++||...+.++.+++... .+.+.++.+|.-|.|... .....|.+.
T Consensus 133 --------------------------~PtnvmGatKrlaE~l~~~~~~~~-~~~~t~f~~VRFGNVlgS--~GSVip~F~ 183 (293)
T PF02719_consen 133 --------------------------NPTNVMGATKRLAEKLVQAANQYS-GNSDTKFSSVRFGNVLGS--RGSVIPLFK 183 (293)
T ss_dssp --------------------------S--SHHHHHHHHHHHHHHHHCCTS-SSS--EEEEEEE-EETTG--TTSCHHHHH
T ss_pred --------------------------CCCcHHHHHHHHHHHHHHHHhhhC-CCCCcEEEEEEecceecC--CCcHHHHHH
Confidence 467799999999999999988876 455799999999999753 233344332
Q ss_pred hhchh---hH---HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 323 LLFPP---FQ---KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 323 ~~~~~---~~---~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
.+... +. ....+-+++++|+++.++..+.-. ..|..+..+
T Consensus 184 ~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl~a~~~~---~~geifvl~ 229 (293)
T PF02719_consen 184 KQIKNGGPLTVTDPDMTRFFMTIEEAVQLVLQAAALA---KGGEIFVLD 229 (293)
T ss_dssp HHHHTTSSEEECETT-EEEEE-HHHHHHHHHHHHHH-----TTEEEEE-
T ss_pred HHHHcCCcceeCCCCcEEEEecHHHHHHHHHHHHhhC---CCCcEEEec
Confidence 22211 00 011133579999999999887553 345554433
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=141.59 Aligned_cols=179 Identities=14% Similarity=0.170 Sum_probs=125.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||.++++.|+++| ++|++.+|...........+... .++..+.+|+++.++++++++. +++|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~-----~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGSPEALKRGERI-TRVTFVEGDLRDRELLDRLFEE-----HKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccchhhhhhhccc-cceEEEECCCCCHHHHHHHHHh-----CCCcE
Confidence 47999999999999999999999 58888766432222222222211 2577889999999999888764 37999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||||..... .+.++..+.+..|+.++..+++++... + ..++|++||...+ +....
T Consensus 74 vv~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~ss~~~~-g~~~~----------- 130 (328)
T TIGR01179 74 VIHFAGLIAVG-----ESVQDPLKYYRNNVVNTLNLLEAMQQT----G--VKKFIFSSSAAVY-GEPSS----------- 130 (328)
T ss_pred EEECccccCcc-----hhhcCchhhhhhhHHHHHHHHHHHHhc----C--CCEEEEecchhhc-CCCCC-----------
Confidence 99999975321 133455677899999999998876432 2 2489999886543 11000
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
.+..+..+..+...|+.+|++.+.+++.++++. .+++++.+.|+.+..+
T Consensus 131 ------------~~~~e~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~g~ 179 (328)
T TIGR01179 131 ------------IPISEDSPLGPINPYGRSKLMSERILRDLSKAD---PGLSYVILRYFNVAGA 179 (328)
T ss_pred ------------CCccccCCCCCCCchHHHHHHHHHHHHHHHHhc---cCCCEEEEecCcccCC
Confidence 011122233355689999999999999887652 4899999999888775
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=141.82 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=121.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++|||||+|+||.++++.|+++| ++|++++|...........+.. .+.++.++.+|++|.+++.++++. .++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 75 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD-----HAID 75 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC-CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc-----CCCC
Confidence 69999999999999999999999 5888887643222211111111 234567889999999998888763 3699
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+||...... ..+.....+++|+.++.++++++.. .+ .++||++||...+ +...
T Consensus 76 ~vvh~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~Ss~~~y-g~~~----------- 132 (338)
T PRK10675 76 TVIHFAGLKAVGE-----SVQKPLEYYDNNVNGTLRLISAMRA----AN--VKNLIFSSSATVY-GDQP----------- 132 (338)
T ss_pred EEEECCccccccc-----hhhCHHHHHHHHHHHHHHHHHHHHH----cC--CCEEEEeccHHhh-CCCC-----------
Confidence 9999999753211 2234456789999999999886543 22 2489999997543 1100
Q ss_pred cccccCCCCCCCCCCCCCCCCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
..+..+..+. .+...|+.+|.+.+.+++.++++. .++++..+.|+.+..
T Consensus 133 ------------~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~ilR~~~v~g 182 (338)
T PRK10675 133 ------------KIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVG 182 (338)
T ss_pred ------------CCccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---CCCcEEEEEeeeecC
Confidence 0011111122 245689999999999999887653 367777787665544
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=137.51 Aligned_cols=208 Identities=16% Similarity=0.235 Sum_probs=129.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~ 161 (399)
+.++++++||||+|+||+++++.|+++| ++|+++.|+.++..... . .+.++.++.+|++|. +++. +.+.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~l~---~~~~-- 83 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVRDVDKAKTSL---P-QDPSLQIVRADVTEGSDKLV---EAIG-- 83 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhc---c-cCCceEEEEeeCCCCHHHHH---HHhh--
Confidence 4457899999999999999999999999 59999999876544322 1 134688899999983 3332 2221
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
.++|+||+|+|......+ ...+++|+.++.++++++.. .+ .++||++||...+. ...
T Consensus 84 -~~~d~vi~~~g~~~~~~~---------~~~~~~n~~~~~~ll~a~~~----~~--~~~iV~iSS~~v~g-~~~------ 140 (251)
T PLN00141 84 -DDSDAVICATGFRRSFDP---------FAPWKVDNFGTVNLVEACRK----AG--VTRFILVSSILVNG-AAM------ 140 (251)
T ss_pred -cCCCEEEECCCCCcCCCC---------CCceeeehHHHHHHHHHHHH----cC--CCEEEEEccccccC-CCc------
Confidence 269999999986421111 12257899999998888642 22 36999999986431 100
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHH-HHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM-QEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~-~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.+....|...|.....+. +..+.++....|+++++|+||++.+++.......
T Consensus 141 -------------------------~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~~~~~~~- 194 (251)
T PLN00141 141 -------------------------GQILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDPPTGNIVM- 194 (251)
T ss_pred -------------------------ccccCcchhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCCCCceEEE-
Confidence 0011123444443322222 2222222234589999999999987633221110
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.. ........++++|+|+.++.++..+..
T Consensus 195 ----~~--~~~~~~~~i~~~dvA~~~~~~~~~~~~ 223 (251)
T PLN00141 195 ----EP--EDTLYEGSISRDQVAEVAVEALLCPES 223 (251)
T ss_pred ----CC--CCccccCcccHHHHHHHHHHHhcChhh
Confidence 00 000112467999999999999877654
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-15 Score=137.46 Aligned_cols=235 Identities=17% Similarity=0.126 Sum_probs=146.4
Q ss_pred EEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 90 IITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 90 lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
|||||+|.||.+++++|+++|. ..|.+.++....... ..+... ....++.+|++|.+++.++++ .+|+|
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~~-~~~~~~~~Di~d~~~l~~a~~-------g~d~V 70 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQKS-GVKEYIQGDITDPESLEEALE-------GVDVV 70 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhcc-cceeEEEeccccHHHHHHHhc-------CCceE
Confidence 6999999999999999999992 377777776543221 111111 223389999999999999887 58999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
||+|+..... .....+.++++|+.|+-++++++...- -.++|++||.+.......+..
T Consensus 71 ~H~Aa~~~~~------~~~~~~~~~~vNV~GT~nvl~aa~~~~------VkrlVytSS~~vv~~~~~~~~---------- 128 (280)
T PF01073_consen 71 FHTAAPVPPW------GDYPPEEYYKVNVDGTRNVLEAARKAG------VKRLVYTSSISVVFDNYKGDP---------- 128 (280)
T ss_pred EEeCcccccc------CcccHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEEcCcceeEeccCCCC----------
Confidence 9999976332 134467789999999999999887542 249999999987742110000
Q ss_pred cccCCCCCCCCCCCCCCCC--CChhhhHHHhHHHHHHHHHHHHH-hhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 249 GFAGGLNGLNSSSMIDGGD--FDGAKAYKDSKVCNMLTMQEFHR-RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~sK~a~~~~~~~la~-~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+. ...+..+ ......|+.||+..+.++..... ++.....++..+|+|..|-.|..............
T Consensus 129 -----~~-----~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~ 198 (280)
T PF01073_consen 129 -----II-----NGDEDTPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVR 198 (280)
T ss_pred -----cc-----cCCcCCcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHH
Confidence 00 0011111 12456899999998888776554 22112358999999999988854322111111111
Q ss_pred hhhHHH-H-----hcCCCChHHHHHHHHHhhc---CC--CCCCCceEE-ccCC
Q 015844 326 PPFQKY-I-----TKGYVSEDEAGKRLAQVVS---DP--SLTKSGVYW-SWNK 366 (399)
Q Consensus 326 ~~~~~~-~-----~~~~~~pee~a~~v~~l~~---~~--~~~~~G~~~-~~dg 366 (399)
...... . ...++..+++|.+.+..+. ++ .....|+.+ .-|+
T Consensus 199 ~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~ 251 (280)
T PF01073_consen 199 SGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDG 251 (280)
T ss_pred hcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECC
Confidence 100000 0 1124679999998765432 22 223566644 4444
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=134.34 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=127.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+|-||.+++..|++.| +.|++++.-...-.+..... ...+++.|+.|.+.+++++++. +||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g~~~~v~~~-----~~~f~~gDi~D~~~L~~vf~~~-----~id 69 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGHKIALLKL-----QFKFYEGDLLDRALLTAVFEEN-----KID 69 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCCHHHhhhc-----cCceEEeccccHHHHHHHHHhc-----CCC
Confidence 379999999999999999999999 58888887543333333221 1578999999999999998874 799
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
.|||.||..... .+.++..+.++.|+.|+..|++++...-. ..|||-||. +.+|.+
T Consensus 70 aViHFAa~~~Vg-----ESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv------~~~vFSStA-avYG~p------------ 125 (329)
T COG1087 70 AVVHFAASISVG-----ESVQNPLKYYDNNVVGTLNLIEAMLQTGV------KKFIFSSTA-AVYGEP------------ 125 (329)
T ss_pred EEEECccccccc-----hhhhCHHHHHhhchHhHHHHHHHHHHhCC------CEEEEecch-hhcCCC------------
Confidence 999999976432 36677888999999999999998766543 267775554 444321
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEee
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 304 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~ 304 (399)
...|+.|..+..+..+|+.||...+.+.+.++... +.++.++.
T Consensus 126 -----------~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~a~----~~~~v~LR 168 (329)
T COG1087 126 -----------TTSPISETSPLAPINPYGRSKLMSEEILRDAAKAN----PFKVVILR 168 (329)
T ss_pred -----------CCcccCCCCCCCCCCcchhHHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 12355666677788899999999999999988775 57766664
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=131.44 Aligned_cols=223 Identities=17% Similarity=0.250 Sum_probs=154.7
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
||||||+|.||.++++.|.++| +.|+...|+........... ++.++.+|+.|.+.++++++.. .+|.|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~-----~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKA-----NIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHH-----TESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccccccccccccccc-----eEEEEEeecccccccccccccc-----CceEE
Confidence 6999999999999999999999 58887777654433222221 6889999999999999999876 69999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
||+|+.... ..+.+.....++.|+.+..++++.+...-. .++|++||...+. ..
T Consensus 70 i~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~------~~~i~~sS~~~y~-~~-------------- 123 (236)
T PF01370_consen 70 IHLAAFSSN-----PESFEDPEEIIEANVQGTRNLLEAAREAGV------KRFIFLSSASVYG-DP-------------- 123 (236)
T ss_dssp EEEBSSSSH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHHTT------SEEEEEEEGGGGT-SS--------------
T ss_pred EEeeccccc-----cccccccccccccccccccccccccccccc------ccccccccccccc-cc--------------
Confidence 999997521 113356778889999999999988875532 3999999954432 10
Q ss_pred cccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc-cccchhh-hhhch
Q 015844 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF-REHIPLF-RLLFP 326 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~-~~~~~~~-~~~~~ 326 (399)
...+..+..+..+...|+.+|...+.+.+.+..+. ++++.++.|+.+-.+... ....... .....
T Consensus 124 ---------~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~ 190 (236)
T PF01370_consen 124 ---------DGEPIDEDSPINPLSPYGASKRAAEELLRDYAKKY----GLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQ 190 (236)
T ss_dssp ---------SSSSBETTSGCCHSSHHHHHHHHHHHHHHHHHHHH----TSEEEEEEESEEESTTSSSSSTSSHHHHHHHH
T ss_pred ---------ccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccchhhHH
Confidence 01122333344566779999999999988888775 899999999999888511 1111111 11111
Q ss_pred hhHHH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 327 PFQKY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 327 ~~~~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
..... ....++..+|+|+.++.++..+. ..|..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~yN 234 (236)
T PF01370_consen 191 ALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPK--AAGGIYN 234 (236)
T ss_dssp HHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSC--TTTEEEE
T ss_pred hhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCC--CCCCEEE
Confidence 11100 01224688999999999998876 3444443
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-14 Score=137.97 Aligned_cols=254 Identities=13% Similarity=0.112 Sum_probs=146.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.++||||||+|.||..+++.|+++|.+.|++++|+............ ....++.++.+|++|.+.+.++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~------ 85 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK------ 85 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh------
Confidence 4556899999999999999999999842589988887654433221100 012368899999999998877765
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC-CCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV-PPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~-~~~ 241 (399)
.+|+|||+|+...... . ..+-.+.+..|+.++.++++++... + .+||++||...+ |...+.. +..
T Consensus 86 -~~d~ViHlAa~~~~~~-~----~~~~~~~~~~n~~gt~~ll~aa~~~----~---~r~v~~SS~~vY-g~~~~~~~~e~ 151 (386)
T PLN02427 86 -MADLTINLAAICTPAD-Y----NTRPLDTIYSNFIDALPVVKYCSEN----N---KRLIHFSTCEVY-GKTIGSFLPKD 151 (386)
T ss_pred -cCCEEEEcccccChhh-h----hhChHHHHHHHHHHHHHHHHHHHhc----C---CEEEEEeeeeee-CCCcCCCCCcc
Confidence 4899999999753211 1 1122345668999999998877532 1 389999997644 2211100 000
Q ss_pred CCccc-cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc-----
Q 015844 242 ANLGD-LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR----- 315 (399)
Q Consensus 242 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~----- 315 (399)
..... .... ... .+..+........+...|+.||.+.+.+++.++.. .|+++..++|+.|..+....
T Consensus 152 ~p~~~~~~~~--~~~-e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilR~~~vyGp~~~~~~~~~ 224 (386)
T PLN02427 152 HPLRQDPAFY--VLK-EDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE----NGLEFTIVRPFNWIGPRMDFIPGID 224 (386)
T ss_pred cccccccccc--ccc-ccccccccCCCCccccchHHHHHHHHHHHHHHHhh----cCCceEEecccceeCCCCCcccccc
Confidence 00000 0000 000 00000000000012357999999998888766544 38999999999998874210
Q ss_pred ---ccch-hhhhh-chhhHHHH---------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 316 ---EHIP-LFRLL-FPPFQKYI---------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 316 ---~~~~-~~~~~-~~~~~~~~---------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
...+ ....+ .......+ ..-++..+|+|++++.++..+.. ..|..|.+.
T Consensus 225 ~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~-~~g~~yni~ 287 (386)
T PLN02427 225 GPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPAR-ANGHIFNVG 287 (386)
T ss_pred ccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCccc-ccCceEEeC
Confidence 0000 00000 00000000 11367899999999988865421 235444443
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-14 Score=136.52 Aligned_cols=234 Identities=18% Similarity=0.168 Sum_probs=141.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHH---HHHHHHhccC-------C-CcEEEEEecCCCHH------
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKA---ERAAKSAGMA-------K-ENYTIMHLDLASLD------ 149 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~---~~~~~~~~~~-------~-~~~~~~~~Dvs~~~------ 149 (399)
+++||||+|+||.++++.|+++|. .+|+++.|+.... +.+.+.+... . .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 489999999999999999999982 2788888875422 1222222110 1 46889999998652
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
....+. ..+|+|||||+..... ..++..+++|+.++.++++.+... + ..+||++||...
T Consensus 81 ~~~~~~-------~~~d~vih~a~~~~~~--------~~~~~~~~~nv~g~~~ll~~a~~~----~--~~~~v~iSS~~v 139 (367)
T TIGR01746 81 EWERLA-------ENVDTIVHNGALVNWV--------YPYSELRAANVLGTREVLRLAASG----R--AKPLHYVSTISV 139 (367)
T ss_pred HHHHHH-------hhCCEEEeCCcEeccC--------CcHHHHhhhhhHHHHHHHHHHhhC----C--CceEEEEccccc
Confidence 332222 3699999999975321 235667889999999998877542 1 236999999876
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
...... .. .... . +. ..........|+.||.+.+.+++.+.. .|+++++++||.+.
T Consensus 140 ~~~~~~---~~-~~~~-------------~-~~-~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~i~Rpg~v~ 195 (367)
T TIGR01746 140 LAAIDL---ST-VTED-------------D-AI-VTPPPGLAGGYAQSKWVAELLVREASD-----RGLPVTIVRPGRIL 195 (367)
T ss_pred cCCcCC---CC-cccc-------------c-cc-cccccccCCChHHHHHHHHHHHHHHHh-----cCCCEEEECCCcee
Confidence 531100 00 0000 0 00 000112245799999998888765432 28999999999998
Q ss_pred CCCCccccc--hhhhhhch-hhH--HHHh-----cCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 310 TTGLFREHI--PLFRLLFP-PFQ--KYIT-----KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 310 T~~~~~~~~--~~~~~~~~-~~~--~~~~-----~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
++....... .....+.. ... ..+. ..++..+++++.++.++..+....+|..+.+.+
T Consensus 196 G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~ 262 (367)
T TIGR01746 196 GNSYTGAINSSDILWRMVKGCLALGAYPDSPELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVN 262 (367)
T ss_pred ecCCCCCCCchhHHHHHHHHHHHhCCCCCCCccccCcccHHHHHHHHHHHHhCCCcccCCceEEecC
Confidence 752211111 11100000 000 0110 125788999999999987765433466665554
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=137.98 Aligned_cols=216 Identities=14% Similarity=0.159 Sum_probs=139.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHH--HHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..++++++||||+|+||+++++.|+++| +.|+++.|+...... ....+.....++.++.+|++|.+++.++++.+
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 133 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE-- 133 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh--
Confidence 4567899999999999999999999999 599999998654321 11111111246788999999999999888754
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+++|+||||+|..... ....+++|+.++.++++++.. .+ .++||++||....
T Consensus 134 -~~~~D~Vi~~aa~~~~~----------~~~~~~vn~~~~~~ll~aa~~----~g--v~r~V~iSS~~v~---------- 186 (390)
T PLN02657 134 -GDPVDVVVSCLASRTGG----------VKDSWKIDYQATKNSLDAGRE----VG--AKHFVLLSAICVQ---------- 186 (390)
T ss_pred -CCCCcEEEECCccCCCC----------CccchhhHHHHHHHHHHHHHH----cC--CCEEEEEeecccc----------
Confidence 12699999999853110 112356788888888887643 22 2589999997543
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+...|..+|...+...+. . ..+++...|+|+.+..+ +.. ....
T Consensus 187 ----------------------------~p~~~~~~sK~~~E~~l~~----~--~~gl~~tIlRp~~~~~~-~~~-~~~~ 230 (390)
T PLN02657 187 ----------------------------KPLLEFQRAKLKFEAELQA----L--DSDFTYSIVRPTAFFKS-LGG-QVEI 230 (390)
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHh----c--cCCCCEEEEccHHHhcc-cHH-HHHh
Confidence 1234578889887665433 1 24899999999887542 111 0000
Q ss_pred hh--hhchhhHHHHhc--CCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 321 FR--LLFPPFQKYITK--GYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 321 ~~--~~~~~~~~~~~~--~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. .....+..-... .++..+|+|..++.++.++.. .|..|.+.|
T Consensus 231 ~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~--~~~~~~Igg 278 (390)
T PLN02657 231 VKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESK--INKVLPIGG 278 (390)
T ss_pred hccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccc--cCCEEEcCC
Confidence 00 000001000001 136789999999998865432 456676655
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.9e-14 Score=133.56 Aligned_cols=234 Identities=14% Similarity=0.124 Sum_probs=143.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC-CHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs-~~~~v~~~~~~~~~~~g~ 164 (399)
+++|||||+|.||.++++.|+++ | ++|+.++|+....... .. ...+.++.+|++ +.+.+.++++ +
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~~~~~~~---~~--~~~~~~~~~Dl~~~~~~~~~~~~-------~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQTDRLGDL---VN--HPRMHFFEGDITINKEWIEYHVK-------K 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcHHHHHHh---cc--CCCeEEEeCCCCCCHHHHHHHHc-------C
Confidence 47999999999999999999986 6 6999998875433221 11 235888999998 6666555443 5
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+|+...+.. ..++.+..+++|+.++.++++++... + .++|++||...+ |..... + +
T Consensus 69 ~d~ViH~aa~~~~~~-----~~~~p~~~~~~n~~~~~~ll~aa~~~----~---~~~v~~SS~~vy-g~~~~~-~----~ 130 (347)
T PRK11908 69 CDVILPLVAIATPAT-----YVKQPLRVFELDFEANLPIVRSAVKY----G---KHLVFPSTSEVY-GMCPDE-E----F 130 (347)
T ss_pred CCEEEECcccCChHH-----hhcCcHHHHHHHHHHHHHHHHHHHhc----C---CeEEEEecceee-ccCCCc-C----c
Confidence 999999999753211 22344567899999999998887542 1 399999997643 211100 0 0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc------c
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH------I 318 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~------~ 318 (399)
. ....+........+...|+.||.+.+.+.+.++.+. |+.+..+.|+.+..+...... .
T Consensus 131 ~-----------ee~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilR~~~v~Gp~~~~~~~~~~~~~ 195 (347)
T PRK11908 131 D-----------PEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE----GLNFTLFRPFNWIGPGLDSIYTPKEGSS 195 (347)
T ss_pred C-----------ccccccccCcCCCccchHHHHHHHHHHHHHHHHHHc----CCCeEEEeeeeeeCCCccCCCccccCCc
Confidence 0 000000000001234579999999988888877553 788999999988776432100 0
Q ss_pred hhh-hhhchhhHH----H-----HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 319 PLF-RLLFPPFQK----Y-----ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 319 ~~~-~~~~~~~~~----~-----~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
... ..+...... . ..+-++..+|+++.++.++..+.....|..+.+.+
T Consensus 196 ~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~ 253 (347)
T PRK11908 196 RVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGN 253 (347)
T ss_pred chHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCC
Confidence 000 000000000 0 01236889999999999887643213345454433
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=128.17 Aligned_cols=204 Identities=17% Similarity=0.183 Sum_probs=133.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|.||.++++.|.++| +.|+++.|+ .+|+.+.++++++++.. .+|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r~---------------------~~d~~~~~~~~~~~~~~-----~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTSS---------------------QLDLTDPEALERLLRAI-----RPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCCc---------------------ccCCCCHHHHHHHHHhC-----CCCE
Confidence 37999999999999999999999 599988884 47999999998887752 5899
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+||..... ......+..+++|+.++.++++++... +.++|++||...+.+. .
T Consensus 54 vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~v~~Ss~~vy~~~-~------------ 108 (287)
T TIGR01214 54 VVNTAAYTDVD-----GAESDPEKAFAVNALAPQNLARAAARH-------GARLVHISTDYVFDGE-G------------ 108 (287)
T ss_pred EEECCcccccc-----ccccCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEeeeeeecCC-C------------
Confidence 99999975221 122345678899999999999986532 1389999997544210 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-hhhhhch
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLLFP 326 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~~~~~ 326 (399)
..+..+..+..+...|+.+|.+.+.+++.+ +.+++.++|+.|..+........ .......
T Consensus 109 -----------~~~~~E~~~~~~~~~Y~~~K~~~E~~~~~~--------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~ 169 (287)
T TIGR01214 109 -----------KRPYREDDATNPLNVYGQSKLAGEQAIRAA--------GPNALIVRTSWLYGGGGGRNFVRTMLRLAGR 169 (287)
T ss_pred -----------CCCCCCCCCCCCcchhhHHHHHHHHHHHHh--------CCCeEEEEeeecccCCCCCCHHHHHHHHhhc
Confidence 001112222334568999999977766543 45788999999987642111111 0000000
Q ss_pred --hhHHH--HhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 327 --PFQKY--ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 327 --~~~~~--~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
.+... ....++..+|+|+++..++..+. ..+|.|.-
T Consensus 170 ~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~~~~~ni 209 (287)
T TIGR01214 170 GEELRVVDDQIGSPTYAKDLARVIAALLQRLA-RARGVYHL 209 (287)
T ss_pred CCCceEecCCCcCCcCHHHHHHHHHHHHhhcc-CCCCeEEE
Confidence 00000 01124567999999999886642 23555543
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=143.17 Aligned_cols=227 Identities=16% Similarity=0.170 Sum_probs=143.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++||||||+|.||.++++.|+++| .++|+.++|.. .....+... ....++.++.+|++|.+.+..++..
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~--- 78 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPS--KSSPNFKFVKGDIASADLVNYLLIT--- 78 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhc--ccCCCeEEEECCCCChHHHHHHHhh---
Confidence 456899999999999999999999983 15888888742 122221111 1124688899999999887766532
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++|+|||+|+..... ...++....+++|+.|+.++++++...- . ..++|++||...+. ..... +
T Consensus 79 --~~~D~ViHlAa~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~a~~~~~---~--vkr~I~~SS~~vyg-~~~~~-~- 143 (668)
T PLN02260 79 --EGIDTIMHFAAQTHVD-----NSFGNSFEFTKNNIYGTHVLLEACKVTG---Q--IRRFIHVSTDEVYG-ETDED-A- 143 (668)
T ss_pred --cCCCEEEECCCccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHhcC---C--CcEEEEEcchHHhC-CCccc-c-
Confidence 2699999999975322 1223345678999999999998875421 0 24899999976442 11000 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc-cch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~-~~~ 319 (399)
.....+..+..+...|+.+|.+.+.+++.+..++ ++++.++.|+.|..+..... ..+
T Consensus 144 ------------------~~~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~----~l~~vilR~~~VyGp~~~~~~~i~ 201 (668)
T PLN02260 144 ------------------DVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY----GLPVITTRGNNVYGPNQFPEKLIP 201 (668)
T ss_pred ------------------ccCccccCCCCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECcccccCcCCCcccHHH
Confidence 0000111122345679999999999988877664 89999999999987743211 111
Q ss_pred hh-hhhc--hhhHH----HHhcCCCChHHHHHHHHHhhcC
Q 015844 320 LF-RLLF--PPFQK----YITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 320 ~~-~~~~--~~~~~----~~~~~~~~pee~a~~v~~l~~~ 352 (399)
.. .... ..+.. .....++..+|+|+++..++..
T Consensus 202 ~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~ 241 (668)
T PLN02260 202 KFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHK 241 (668)
T ss_pred HHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhc
Confidence 10 0000 00000 0011256799999999888754
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-15 Score=150.70 Aligned_cols=240 Identities=15% Similarity=0.163 Sum_probs=178.4
Q ss_pred ccccccccccc---cccccceeeeccccccccccchHhHhHHhhcccCCceeeccccCCCCccccCC-----CcCccccC
Q 015844 14 SVPKEGKTSAS---FKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSS-----PQGKKTLR 85 (399)
Q Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ 85 (399)
++.++|..++. .+.+.|.+-.+ ++|||+|.+++|.||++...+.+.+.....+.+ .+....-.
T Consensus 1697 ~Lv~eGIksGvV~PL~ttvF~~~qv---------E~AFRfMasGKHIGKVvikvr~eE~~k~~~pk~r~i~AI~rt~~hp 1767 (2376)
T KOG1202|consen 1697 ALVAEGIKSGVVRPLPTTVFHGQQV---------EDAFRFMASGKHIGKVVIKVRAEEPAKAKGPKPRLISAIPRTYCHP 1767 (2376)
T ss_pred HHHHhhhccCceeccccccccHHHH---------HHHHHHHhccCccceEEEEEcccccccccCCchhhHhhcchhhcCc
Confidence 45666777666 45567777655 899999999999999987655543322111111 11122235
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH---HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~---~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.|+|+|+||-||.|+++|.||.++||+++++++|+.-+ ....++.++..|.++.+-..|++..+....++++.. +.
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~-kl 1846 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESN-KL 1846 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhh-hc
Confidence 78999999999999999999999999999999998532 234456667778888888889999999999888754 46
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++.+++|.|.+. .+..+++.++++|+.+-+..+.|+.+|-+.-......-+ .||.+||++.-.
T Consensus 1847 ~~vGGiFnLA~VL-RD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~Ld----yFv~FSSvscGR----------- 1910 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVL-RDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELD----YFVVFSSVSCGR----------- 1910 (2376)
T ss_pred ccccchhhHHHHH-HhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccc----eEEEEEeecccC-----------
Confidence 7899999999997 667889999999999999999999998776655544332 788888887543
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
+..++..|+-+..+++.+.+.-..+ |..-.+|.-|.|
T Consensus 1911 ------------------------GN~GQtNYG~aNS~MERiceqRr~~-----GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1911 ------------------------GNAGQTNYGLANSAMERICEQRRHE-----GFPGTAIQWGAI 1947 (2376)
T ss_pred ------------------------CCCcccccchhhHHHHHHHHHhhhc-----CCCcceeeeecc
Confidence 3357889999999998887643332 444444555444
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.3e-14 Score=144.86 Aligned_cols=234 Identities=12% Similarity=0.121 Sum_probs=145.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHH-HHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~-v~~~~~~~~~~~ 162 (399)
.+++||||||+|.||.+++++|+++ | +.|+.++|........ .. ..++.++.+|++|... ++++++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~~~~~~~---~~--~~~~~~~~gDl~d~~~~l~~~l~------ 381 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGSDAISRF---LG--HPRFHFVEGDISIHSEWIEYHIK------ 381 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCchhhhhh---cC--CCceEEEeccccCcHHHHHHHhc------
Confidence 4678999999999999999999986 6 6999999876432221 11 2357888999998654 343332
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.+|+|||+|+...... ..+..+..+++|+.++.++++++... + .++|++||...+ |.... .+
T Consensus 382 -~~D~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~~t~~ll~a~~~~----~---~~~V~~SS~~vy-g~~~~-~~--- 443 (660)
T PRK08125 382 -KCDVVLPLVAIATPIE-----YTRNPLRVFELDFEENLKIIRYCVKY----N---KRIIFPSTSEVY-GMCTD-KY--- 443 (660)
T ss_pred -CCCEEEECccccCchh-----hccCHHHHHHhhHHHHHHHHHHHHhc----C---CeEEEEcchhhc-CCCCC-CC---
Confidence 5999999999754321 12234567899999999999987653 1 389999997544 21000 00
Q ss_pred CccccccccCCCCCCCCCCCCCCCCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc----
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---- 317 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~---- 317 (399)
.+. + .+.....+. .+...|+.||.+.+.+++.+++++ |+++..+.|+.+..|......
T Consensus 444 -~~E-----------~-~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~~~~~~~~~~ 506 (660)
T PRK08125 444 -FDE-----------D-TSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE----GLRFTLFRPFNWMGPRLDNLNAARI 506 (660)
T ss_pred -cCc-----------c-ccccccCCCCCCccchHHHHHHHHHHHHHHHHhc----CCceEEEEEceeeCCCccccccccc
Confidence 000 0 000000011 234579999999999988877664 899999999999877421100
Q ss_pred --ch-hhhhhchhhHH----HH-----hcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 318 --IP-LFRLLFPPFQK----YI-----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 318 --~~-~~~~~~~~~~~----~~-----~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
.. ....+...... .. .+-++..+|++++++.++........|..|.+.
T Consensus 507 ~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~ 566 (660)
T PRK08125 507 GSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIG 566 (660)
T ss_pred cccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccccccCCeEEEcC
Confidence 00 00000000000 00 122578999999998888654222345544443
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-13 Score=126.75 Aligned_cols=213 Identities=12% Similarity=-0.012 Sum_probs=134.0
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
+|||||+|.||.++++.|.++|.+.|++++|..... ... .+ . ...+..|+++.+.++.+.+. .+.++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~-~~---~--~~~~~~d~~~~~~~~~~~~~---~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KFL-NL---A--DLVIADYIDKEDFLDRLEKG---AFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hhh-hh---h--heeeeccCcchhHHHHHHhh---ccCCCCEE
Confidence 589999999999999999999953687777653221 111 11 1 13466788888777665543 34579999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
||+|+... .+.++.+..+++|+.++.++++++... +.++|++||...+ +....
T Consensus 71 vh~A~~~~-------~~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~v~~SS~~vy-~~~~~------------ 123 (314)
T TIGR02197 71 FHQGACSD-------TTETDGEYMMENNYQYSKRLLDWCAEK-------GIPFIYASSAATY-GDGEA------------ 123 (314)
T ss_pred EECccccC-------ccccchHHHHHHHHHHHHHHHHHHHHh-------CCcEEEEccHHhc-CCCCC------------
Confidence 99999642 123456778999999999999987643 2489999997543 21000
Q ss_pred cccCCCCCCCCCCCCCCC-CCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--chhh-hhh
Q 015844 249 GFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPLF-RLL 324 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~-~~~ 324 (399)
+..+.. ...+...|+.||.+.+.+++....+. ..++++..+.|+.+..+...... .... ..+
T Consensus 124 ------------~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ 189 (314)
T TIGR02197 124 ------------GFREGRELERPLNVYGYSKFLFDQYVRRRVLPE--ALSAQVVGLRYFNVYGPREYHKGKMASVAFHLF 189 (314)
T ss_pred ------------CcccccCcCCCCCHHHHHHHHHHHHHHHHhHhh--ccCCceEEEEEeeccCCCCCCCCCcccHHHHHH
Confidence 011111 11245679999999999887644332 23678888999888876422110 0000 000
Q ss_pred chhhHH----H-----------HhcCCCChHHHHHHHHHhhcC
Q 015844 325 FPPFQK----Y-----------ITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 325 ~~~~~~----~-----------~~~~~~~pee~a~~v~~l~~~ 352 (399)
...... . ....++..+|+++.++.++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~ 232 (314)
T TIGR02197 190 NQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN 232 (314)
T ss_pred HHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc
Confidence 000000 0 002357899999999998876
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=129.84 Aligned_cols=211 Identities=11% Similarity=0.068 Sum_probs=131.4
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH--cCCCcc
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--SGRPLD 166 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~--~~g~id 166 (399)
+|||||+|.||.+++++|+++| +.++++.|+........ ....+|+.|..+.+.+++.+.+ .++++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d 70 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTKFV----------NLVDLDIADYMDKEDFLAQIMAGDDFGDIE 70 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecCCCcchHHH----------hhhhhhhhhhhhHHHHHHHHhcccccCCcc
Confidence 7999999999999999999999 45555555432211110 1234677777666666665543 345799
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+||..... ... -+..++.|+.++.++++++... + .++|++||...+. ....
T Consensus 71 ~Vih~A~~~~~~----~~~---~~~~~~~n~~~t~~ll~~~~~~----~---~~~i~~SS~~vyg-~~~~---------- 125 (308)
T PRK11150 71 AIFHEGACSSTT----EWD---GKYMMDNNYQYSKELLHYCLER----E---IPFLYASSAATYG-GRTD---------- 125 (308)
T ss_pred EEEECceecCCc----CCC---hHHHHHHHHHHHHHHHHHHHHc----C---CcEEEEcchHHhC-cCCC----------
Confidence 999999864221 111 2356899999999999987542 2 3799999986542 1000
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--chhhhhh
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPLFRLL 324 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~ 324 (399)
.+..+..+..+...|+.||.+.+.+.+.++.+ .++++.++.|+.|-.+...... ......+
T Consensus 126 -------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~ 188 (308)
T PRK11150 126 -------------DFIEEREYEKPLNVYGYSKFLFDEYVRQILPE----ANSQICGFRYFNVYGPREGHKGSMASVAFHL 188 (308)
T ss_pred -------------CCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH----cCCCEEEEeeeeecCCCCCCCCccchhHHHH
Confidence 00111123344567999999988888777654 3899999999998876432111 1110000
Q ss_pred chhhH-H----HH------hcCCCChHHHHHHHHHhhcC
Q 015844 325 FPPFQ-K----YI------TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 325 ~~~~~-~----~~------~~~~~~pee~a~~v~~l~~~ 352 (399)
..... . .. .+.++..+|+|++++.++..
T Consensus 189 ~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~ 227 (308)
T PRK11150 189 NNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWEN 227 (308)
T ss_pred HHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhc
Confidence 00000 0 00 12256889999998888765
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=129.82 Aligned_cols=220 Identities=15% Similarity=0.078 Sum_probs=139.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+++++|||||+|.||.++++.|.++| +.|+.++|...... ........++.+|++|.+.+..+++ .
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~ 85 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKKNEHM------SEDMFCHEFHLVDLRVMENCLKVTK-------G 85 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEecccccc------ccccccceEEECCCCCHHHHHHHHh-------C
Confidence 57899999999999999999999999 69999988642110 0001124677899999887766653 5
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+|+...... . ...+....+..|+.++.++++++... + ..+||++||...+. ..... +.
T Consensus 86 ~D~Vih~Aa~~~~~~-~---~~~~~~~~~~~N~~~t~nll~aa~~~----~--vk~~V~~SS~~vYg-~~~~~-~~---- 149 (370)
T PLN02695 86 VDHVFNLAADMGGMG-F---IQSNHSVIMYNNTMISFNMLEAARIN----G--VKRFFYASSACIYP-EFKQL-ET---- 149 (370)
T ss_pred CCEEEEcccccCCcc-c---cccCchhhHHHHHHHHHHHHHHHHHh----C--CCEEEEeCchhhcC-Ccccc-Cc----
Confidence 899999998652211 1 11223445778999999999987543 1 24899999976441 10000 00
Q ss_pred cccccccCCCCCCCCCCCCCC--CCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc----cc
Q 015844 245 GDLRGFAGGLNGLNSSSMIDG--GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE----HI 318 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~----~~ 318 (399)
..+..+. .+..+...|+.+|.+.+.+++.++..+ |+++..+.|+.|..|..... ..
T Consensus 150 --------------~~~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~~~~~~~~~~~ 211 (370)
T PLN02695 150 --------------NVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF----GIECRIGRFHNIYGPFGTWKGGREKA 211 (370)
T ss_pred --------------CCCcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEECCccCCCCCcccccccc
Confidence 0001111 133456789999999999888876654 89999999999988742110 00
Q ss_pred h--hhhhhc---hhhHHHH----hcCCCChHHHHHHHHHhhcC
Q 015844 319 P--LFRLLF---PPFQKYI----TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 319 ~--~~~~~~---~~~~~~~----~~~~~~pee~a~~v~~l~~~ 352 (399)
+ +..... ..+.-.. ...++..+|+++.++.++..
T Consensus 212 ~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~ 254 (370)
T PLN02695 212 PAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKS 254 (370)
T ss_pred HHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhc
Confidence 1 101000 0000000 12257889999999987765
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-13 Score=126.51 Aligned_cols=215 Identities=16% Similarity=0.148 Sum_probs=141.1
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc-cE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL-DV 167 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i-d~ 167 (399)
+|||||+|.||.+++++|.++| +.|+.++|......... ..+.++.+|+++.+.+...++. . |+
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~-------~~d~ 67 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLDPLL-------SGVEFVVLDLTDRDLVDELAKG-------VPDA 67 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCccccccc-------cccceeeecccchHHHHHHHhc-------CCCE
Confidence 9999999999999999999999 69999999765433221 3567889999999655555542 3 99
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+|+........ .. +....+.+|+.++.++++++...- ..+||+.||.+...+. . +
T Consensus 68 vih~aa~~~~~~~~---~~-~~~~~~~~nv~gt~~ll~aa~~~~------~~~~v~~ss~~~~~~~-~---~-------- 125 (314)
T COG0451 68 VIHLAAQSSVPDSN---AS-DPAEFLDVNVDGTLNLLEAARAAG------VKRFVFASSVSVVYGD-P---P-------- 125 (314)
T ss_pred EEEccccCchhhhh---hh-CHHHHHHHHHHHHHHHHHHHHHcC------CCeEEEeCCCceECCC-C---C--------
Confidence 99999986432111 11 455689999999999999987611 2488996665544311 0 0
Q ss_pred ccccCCCCCCCCCCCCCC-CCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-hhhh-h
Q 015844 248 RGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRL-L 324 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~~-~ 324 (399)
..+..+. .+..+...|+.||.+.+.+++....+ .|+.+..+.|+.|-.++....... .... +
T Consensus 126 -----------~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~~----~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~ 190 (314)
T COG0451 126 -----------PLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARL----YGLPVVILRPFNVYGPGDKPDLSSGVVSAFI 190 (314)
T ss_pred -----------CCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hCCCeEEEeeeeeeCCCCCCCCCcCcHHHHH
Confidence 0011111 12223338999999999998888873 489999999998887754332111 1110 0
Q ss_pred chhhHHHH---h-------cCCCChHHHHHHHHHhhcCCCC
Q 015844 325 FPPFQKYI---T-------KGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 325 ~~~~~~~~---~-------~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.......+ . ..++..+|+++.++.++..+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 231 (314)
T COG0451 191 RQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDG 231 (314)
T ss_pred HHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCC
Confidence 00111110 0 1245689999999999987644
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=127.55 Aligned_cols=219 Identities=12% Similarity=0.090 Sum_probs=135.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHH-HHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
-++++||||||+|.||..++++|+++| +.|++++|..... +.....+. ..++.++..|+.+.. +
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~-----l------- 181 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPI-----L------- 181 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCccchhhhhhhcc--CCceEEEECCccChh-----h-------
Confidence 356899999999999999999999999 5898887653211 11111111 235777888987652 1
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
..+|+|||+|+...+.. ..++....+++|+.++.++++++... + .++|++||...+. .... .+..
T Consensus 182 ~~~D~ViHlAa~~~~~~-----~~~~p~~~~~~Nv~gt~nLleaa~~~----g---~r~V~~SS~~VYg-~~~~-~p~~- 246 (442)
T PLN02206 182 LEVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRV----G---ARFLLTSTSEVYG-DPLQ-HPQV- 246 (442)
T ss_pred cCCCEEEEeeeecchhh-----hhcCHHHHHHHHHHHHHHHHHHHHHh----C---CEEEEECChHHhC-CCCC-CCCC-
Confidence 15899999998753211 11234678899999999999987543 1 3899999976542 1000 0000
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-hh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~ 321 (399)
++ ...+..+..+...|+.||.+.+.++..+.+++ ++++..+.|+.+..+........ ..
T Consensus 247 --E~--------------~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~----g~~~~ilR~~~vyGp~~~~~~~~~v~ 306 (442)
T PLN02206 247 --ET--------------YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA----NVEVRIARIFNTYGPRMCIDDGRVVS 306 (442)
T ss_pred --cc--------------ccccCCCCCccchHHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCCCCccccchHH
Confidence 00 00001133345689999999888887776554 78999999988877643211100 00
Q ss_pred hhhchhhHH--HH-------hcCCCChHHHHHHHHHhhcC
Q 015844 322 RLLFPPFQK--YI-------TKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 322 ~~~~~~~~~--~~-------~~~~~~pee~a~~v~~l~~~ 352 (399)
..+...... .. .+.++-.+|+|+.++.++..
T Consensus 307 ~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~ 346 (442)
T PLN02206 307 NFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 346 (442)
T ss_pred HHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhc
Confidence 111111110 00 11256789999999888754
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=123.27 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=128.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+++||||+|.||.++++.|+++| +.|++++|+..+..... ...+.++.+|++|++++.++++ .+|+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~~~l~------~~~v~~v~~Dl~d~~~l~~al~-------g~d~ 67 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKASFLK------EWGAELVYGDLSLPETLPPSFK-------GVTA 67 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHhhhHh------hcCCEEEECCCCCHHHHHHHHC-------CCCE
Confidence 69999999999999999999999 69999999865433221 1247889999999998877765 5899
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+++... .+.....++|+.++.++++++...- -.++|++||.....
T Consensus 68 Vi~~~~~~~----------~~~~~~~~~~~~~~~~l~~aa~~~g------vkr~I~~Ss~~~~~---------------- 115 (317)
T CHL00194 68 IIDASTSRP----------SDLYNAKQIDWDGKLALIEAAKAAK------IKRFIFFSILNAEQ---------------- 115 (317)
T ss_pred EEECCCCCC----------CCccchhhhhHHHHHHHHHHHHHcC------CCEEEEeccccccc----------------
Confidence 999876421 1122356688889888888775431 23899998853321
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
.+...|..+|...+.+.+ + .+++++.+.|+.+....+.....+........
T Consensus 116 ---------------------~~~~~~~~~K~~~e~~l~----~----~~l~~tilRp~~~~~~~~~~~~~~~~~~~~~~ 166 (317)
T CHL00194 116 ---------------------YPYIPLMKLKSDIEQKLK----K----SGIPYTIFRLAGFFQGLISQYAIPILEKQPIW 166 (317)
T ss_pred ---------------------cCCChHHHHHHHHHHHHH----H----cCCCeEEEeecHHhhhhhhhhhhhhccCCceE
Confidence 112347788877655432 2 37889999998654221110001100000000
Q ss_pred h-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 328 F-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 328 ~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
. .......++..+|+|+.++.++..+.. .|..+...|
T Consensus 167 ~~~~~~~~~~i~v~Dva~~~~~~l~~~~~--~~~~~ni~g 204 (317)
T CHL00194 167 ITNESTPISYIDTQDAAKFCLKSLSLPET--KNKTFPLVG 204 (317)
T ss_pred ecCCCCccCccCHHHHHHHHHHHhcCccc--cCcEEEecC
Confidence 0 000011245779999999988876432 456666555
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-13 Score=119.88 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=123.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC----hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~----~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++||||||+|.||.+++.+|.++| +.|++++.- .+.+... +++...+.++.+++.|+.|.+.++++++..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~~~sl~r~-~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~--- 76 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSYLESLKRV-RQLLGEGKSVFFVEGDLNDAEALEKLFSEV--- 76 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccchhHHHHH-HHhcCCCCceEEEEeccCCHHHHHHHHhhc---
Confidence 5689999999999999999999999 588887642 2233333 333333578999999999999999999875
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++|.|+|-|+..... .+.+.....++.|+.|+++++.....+-. ..+|+.||.+.+. . |
T Consensus 77 --~fd~V~Hfa~~~~vg-----eS~~~p~~Y~~nNi~gtlnlLe~~~~~~~------~~~V~sssatvYG-~-----p-- 135 (343)
T KOG1371|consen 77 --KFDAVMHFAALAAVG-----ESMENPLSYYHNNIAGTLNLLEVMKAHNV------KALVFSSSATVYG-L-----P-- 135 (343)
T ss_pred --CCceEEeehhhhccc-----hhhhCchhheehhhhhHHHHHHHHHHcCC------ceEEEecceeeec-C-----c--
Confidence 699999999975432 25566688899999999999988766541 3788888876552 1 1
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCC-hhhhHHHhHHHHHHHHHHHHHhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRF 292 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~ 292 (399)
..-++.+..+.. +...|+.+|.+++...+.+...+
T Consensus 136 ----------------~~ip~te~~~t~~p~~pyg~tK~~iE~i~~d~~~~~ 171 (343)
T KOG1371|consen 136 ----------------TKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAY 171 (343)
T ss_pred ----------------ceeeccCcCCCCCCCCcchhhhHHHHHHHHhhhccc
Confidence 112334444444 77899999999999888877665
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-12 Score=124.35 Aligned_cols=219 Identities=12% Similarity=0.109 Sum_probs=135.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+.++||||||+|.||..+++.|+++| +.|++++|...........+. ...++.++..|+.+.. + ..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~-----~-------~~ 184 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFTGRKENLVHLF-GNPRFELIRHDVVEPI-----L-------LE 184 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCccHhHhhhhc-cCCceEEEECcccccc-----c-------cC
Confidence 45689999999999999999999999 599999875321111111111 1235678888886642 1 25
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+|+...... ...+....+++|+.|+.++++++... +.++|++||...+. ..... +...
T Consensus 185 ~D~ViHlAa~~~~~~-----~~~~p~~~~~~Nv~gT~nLleaa~~~-------g~r~V~~SS~~VYg-~~~~~-p~~E-- 248 (436)
T PLN02166 185 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV-------GARFLLTSTSEVYG-DPLEH-PQKE-- 248 (436)
T ss_pred CCEEEECceeccchh-----hccCHHHHHHHHHHHHHHHHHHHHHh-------CCEEEEECcHHHhC-CCCCC-CCCc--
Confidence 899999998753211 11234578899999999999887653 13899999876542 11000 0000
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh-hh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-RL 323 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~-~~ 323 (399)
.......+..+...|+.+|.+.+.+++.+.+.. ++.+..+.|+.|..+.......... ..
T Consensus 249 ---------------~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~----~l~~~ilR~~~vYGp~~~~~~~~~i~~~ 309 (436)
T PLN02166 249 ---------------TYWGNVNPIGERSCYDEGKRTAETLAMDYHRGA----GVEVRIARIFNTYGPRMCLDDGRVVSNF 309 (436)
T ss_pred ---------------cccccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEEccccCCCCCCCccchHHHH
Confidence 000001233345689999999998888776653 7899999999888774321100000 11
Q ss_pred hchhhHH----H-----HhcCCCChHHHHHHHHHhhcC
Q 015844 324 LFPPFQK----Y-----ITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 324 ~~~~~~~----~-----~~~~~~~pee~a~~v~~l~~~ 352 (399)
+...... . ..+.++..+|++++++.++..
T Consensus 310 i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~ 347 (436)
T PLN02166 310 VAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEG 347 (436)
T ss_pred HHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhc
Confidence 1001000 0 012357899999999988754
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-13 Score=124.10 Aligned_cols=156 Identities=14% Similarity=0.076 Sum_probs=109.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|.||.++++.|.++| + |+.++|... .+..|++|.+.++++++.. ++|+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~-V~~~~~~~~-----------------~~~~Dl~d~~~~~~~~~~~-----~~D~ 57 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-N-LIALDVHST-----------------DYCGDFSNPEGVAETVRKI-----RPDV 57 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-C-EEEeccccc-----------------cccCCCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999999 4 777776421 2357999999998887753 5899
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+|+..... ...++.+..+.+|+.++.++++++... +.++|++||...+-+. .
T Consensus 58 Vih~Aa~~~~~-----~~~~~~~~~~~~N~~~~~~l~~aa~~~-------g~~~v~~Ss~~Vy~~~-~------------ 112 (299)
T PRK09987 58 IVNAAAHTAVD-----KAESEPEFAQLLNATSVEAIAKAANEV-------GAWVVHYSTDYVFPGT-G------------ 112 (299)
T ss_pred EEECCccCCcc-----hhhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEccceEECCC-C------------
Confidence 99999976332 122334566789999999999987653 2389999886644211 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
..+..+..+..+...|+.||.+.+.+++.+.. ....+.|+.+-.+
T Consensus 113 -----------~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~~--------~~~ilR~~~vyGp 157 (299)
T PRK09987 113 -----------DIPWQETDATAPLNVYGETKLAGEKALQEHCA--------KHLIFRTSWVYAG 157 (299)
T ss_pred -----------CCCcCCCCCCCCCCHHHHHHHHHHHHHHHhCC--------CEEEEecceecCC
Confidence 01122223444566899999998887754432 2366777777665
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=121.43 Aligned_cols=200 Identities=15% Similarity=0.088 Sum_probs=128.3
Q ss_pred EEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEE
Q 015844 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 169 (399)
Q Consensus 90 lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv 169 (399)
|||||+|.||..+++.|++.|. .|+++.+. ..+|++|.++++++++.. ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-~v~~~~~~--------------------~~~Dl~~~~~l~~~~~~~-----~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-TNLVLRTH--------------------KELDLTRQADVEAFFAKE-----KPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-cEEEeecc--------------------ccCCCCCHHHHHHHHhcc-----CCCEEE
Confidence 6999999999999999999994 66655332 148999999988887652 589999
Q ss_pred ecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccccc
Q 015844 170 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 249 (399)
Q Consensus 170 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 249 (399)
|+|+..... . ...++....+++|+.++.++++++...- -.++|++||...+ +.... .
T Consensus 55 h~A~~~~~~--~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~------~~~~i~~SS~~vy-g~~~~-~----------- 111 (306)
T PLN02725 55 LAAAKVGGI--H--ANMTYPADFIRENLQIQTNVIDAAYRHG------VKKLLFLGSSCIY-PKFAP-Q----------- 111 (306)
T ss_pred Eeeeeeccc--c--hhhhCcHHHHHHHhHHHHHHHHHHHHcC------CCeEEEeCceeec-CCCCC-C-----------
Confidence 999974211 0 0112334578899999999999886531 2489999997543 21100 0
Q ss_pred ccCCCCCCCCCCCCCC----CCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc-----ccch
Q 015844 250 FAGGLNGLNSSSMIDG----GDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-----EHIP 319 (399)
Q Consensus 250 ~~~~~~~~~~~~~~~~----~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~-----~~~~ 319 (399)
+..|. .+. +....|+.||.+.+.+.+.+..++ ++++..+.|+.|..+.... ...+
T Consensus 112 -----------~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~~~~~~~~~~~~~ 176 (306)
T PLN02725 112 -----------PIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQY----GWDAISGMPTNLYGPHDNFHPENSHVIP 176 (306)
T ss_pred -----------CCCHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCCCCCCCCCCcccH
Confidence 00010 011 222359999999988887776554 7999999999998774210 0001
Q ss_pred h-hhhh-c-----hhhH-----HHHhcCCCChHHHHHHHHHhhcCC
Q 015844 320 L-FRLL-F-----PPFQ-----KYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 320 ~-~~~~-~-----~~~~-----~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
. ...+ . .+.. ......++..+|+++.++.++...
T Consensus 177 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~ 222 (306)
T PLN02725 177 ALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRY 222 (306)
T ss_pred HHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhcc
Confidence 0 0000 0 0000 011124678999999999988753
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=109.87 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=130.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
+||||++|-+|.++++.|. .+ ..|+.++|.. +|++|.+.+.+++.+. ++|+|
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~-~~v~a~~~~~---------------------~Ditd~~~v~~~i~~~-----~PDvV 54 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GE-FEVIATDRAE---------------------LDITDPDAVLEVIRET-----RPDVV 54 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CC-ceEEeccCcc---------------------ccccChHHHHHHHHhh-----CCCEE
Confidence 8999999999999999998 55 5888887753 8999999999999986 79999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
||+|++...+. -+.+-+..+.+|..|+.++.+++... +..+|++|+-.-+-|.
T Consensus 55 In~AAyt~vD~-----aE~~~e~A~~vNa~~~~~lA~aa~~~-------ga~lVhiSTDyVFDG~--------------- 107 (281)
T COG1091 55 INAAAYTAVDK-----AESEPELAFAVNATGAENLARAAAEV-------GARLVHISTDYVFDGE--------------- 107 (281)
T ss_pred EECcccccccc-----ccCCHHHHHHhHHHHHHHHHHHHHHh-------CCeEEEeecceEecCC---------------
Confidence 99999874432 34446789999999999999998765 4589999987654322
Q ss_pred cccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch--
Q 015844 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP-- 326 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~-- 326 (399)
...+..+.....+...|+.||.+-+..++.... +...|...++-.. ..+++....-.+..
T Consensus 108 ---------~~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~~--------~~~I~Rtswv~g~-~g~nFv~tml~la~~~ 169 (281)
T COG1091 108 ---------KGGPYKETDTPNPLNVYGRSKLAGEEAVRAAGP--------RHLILRTSWVYGE-YGNNFVKTMLRLAKEG 169 (281)
T ss_pred ---------CCCCCCCCCCCCChhhhhHHHHHHHHHHHHhCC--------CEEEEEeeeeecC-CCCCHHHHHHHHhhcC
Confidence 122344555667888999999998877765432 2333444444332 11111111100000
Q ss_pred ----hhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 327 ----PFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 327 ----~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.+.. -.+.....+++|+.+..++...
T Consensus 170 ~~l~vv~D-q~gsPt~~~dlA~~i~~ll~~~ 199 (281)
T COG1091 170 KELKVVDD-QYGSPTYTEDLADAILELLEKE 199 (281)
T ss_pred CceEEECC-eeeCCccHHHHHHHHHHHHhcc
Confidence 0000 0122457789999999987665
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-11 Score=125.35 Aligned_cols=227 Identities=16% Similarity=0.109 Sum_probs=134.4
Q ss_pred EEEEEcCCChHHHHHHHHHH--HcCCcEEEEeecChHH--HHHHHHHhccCCCcEEEEEecCCCHHHH--HHHHHHHHHc
Q 015844 88 SVIITGASSGLGLATAKALA--ETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSV--RQFVDTFRRS 161 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~--~~Ga~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dvs~~~~v--~~~~~~~~~~ 161 (399)
++|||||+|.||.++++.|+ +.| +.|++++|+... .+...... ...++.++.+|++|++.. ...++.+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~~~~~~~~~~~l--- 75 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQSLSRLEALAAYW--GADRVVPLVGDLTEPGLGLSEADIAEL--- 75 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcchHHHHHHHHHhc--CCCcEEEEecccCCccCCcCHHHHHHh---
Confidence 69999999999999999999 578 599999996432 22222211 114688899999985310 1122222
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
..+|+|||+||..... ......+++|+.++.++++++... + ..++|++||...+. ...+.
T Consensus 76 -~~~D~Vih~Aa~~~~~--------~~~~~~~~~nv~gt~~ll~~a~~~----~--~~~~v~~SS~~v~g-~~~~~---- 135 (657)
T PRK07201 76 -GDIDHVVHLAAIYDLT--------ADEEAQRAANVDGTRNVVELAERL----Q--AATFHHVSSIAVAG-DYEGV---- 135 (657)
T ss_pred -cCCCEEEECceeecCC--------CCHHHHHHHHhHHHHHHHHHHHhc----C--CCeEEEEecccccc-CccCc----
Confidence 3799999999975321 123456789999999998876542 1 24899999976542 11000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--h
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--P 319 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--~ 319 (399)
... ... ..+......|+.||...+.+.+. ..|+++..+.|+.|..+.-..... .
T Consensus 136 --~~e-------------~~~--~~~~~~~~~Y~~sK~~~E~~~~~-------~~g~~~~ilRp~~v~G~~~~g~~~~~~ 191 (657)
T PRK07201 136 --FRE-------------DDF--DEGQGLPTPYHRTKFEAEKLVRE-------ECGLPWRVYRPAVVVGDSRTGEMDKID 191 (657)
T ss_pred --ccc-------------ccc--hhhcCCCCchHHHHHHHHHHHHH-------cCCCcEEEEcCCeeeecCCCCccccCC
Confidence 000 000 00112235699999998877642 138999999999997652111000 0
Q ss_pred hhhhhchhhH---HH----H-------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLLFPPFQ---KY----I-------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~~~~~~---~~----~-------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
....+...+. .. + ...++..+++++++..++..+. ..|+.+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~--~~g~~~ni~~ 250 (657)
T PRK07201 192 GPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDG--RDGQTFHLTD 250 (657)
T ss_pred cHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcC--CCCCEEEeCC
Confidence 0000000000 00 0 0124568999999998876432 3565554443
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=113.78 Aligned_cols=180 Identities=20% Similarity=0.175 Sum_probs=100.6
Q ss_pred EEcCCChHHHHHHHHHHHcCC-cEEEEeecChHH---HHHHHHHhcc----------CCCcEEEEEecCCCHH------H
Q 015844 91 ITGASSGLGLATAKALAETGK-WHIIMACRDFLK---AERAAKSAGM----------AKENYTIMHLDLASLD------S 150 (399)
Q Consensus 91 VTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~---~~~~~~~~~~----------~~~~~~~~~~Dvs~~~------~ 150 (399)
||||||.||..+.++|++.+. .+|+++.|.... .+.+.+.+.. ...+++++.+|++++. .
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999883 289999997532 2333232221 1468999999999853 3
Q ss_pred HHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc
Q 015844 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~ 230 (399)
.+.+.+ .+|+|||||+...... .+++..++|+.|+.++++.+.. .+ ..+++++|| +..
T Consensus 81 ~~~L~~-------~v~~IiH~Aa~v~~~~--------~~~~~~~~NV~gt~~ll~la~~----~~--~~~~~~iST-a~v 138 (249)
T PF07993_consen 81 YQELAE-------EVDVIIHCAASVNFNA--------PYSELRAVNVDGTRNLLRLAAQ----GK--RKRFHYIST-AYV 138 (249)
T ss_dssp HHHHHH-------H--EEEE--SS-SBS---------S--EEHHHHHHHHHHHHHHHTS----SS-----EEEEEE-GGG
T ss_pred hhcccc-------ccceeeecchhhhhcc--------cchhhhhhHHHHHHHHHHHHHh----cc--CcceEEecc-ccc
Confidence 333333 5999999999864321 3445778999999999988752 11 238999999 333
Q ss_pred cCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
.+...+.......-.. .............|..||..-+.+.+..+.+. |+.+..++||.|-.
T Consensus 139 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~----g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 139 AGSRPGTIEEKVYPEE--------------EDDLDPPQGFPNGYEQSKWVAERLLREAAQRH----GLPVTIYRPGIIVG 200 (249)
T ss_dssp TTS-TTT--SSS-HHH----------------EEE--TTSEE-HHHHHHHHHHHHHHHHHHH-------EEEEEE-EEE-
T ss_pred cCCCCCcccccccccc--------------cccchhhccCCccHHHHHHHHHHHHHHHHhcC----CceEEEEecCcccc
Confidence 2211111000000000 00000122334489999999999998888764 89999999999976
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-11 Score=103.69 Aligned_cols=182 Identities=21% Similarity=0.256 Sum_probs=121.7
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
|+|+||+|.+|+.+++.|+++| ++|+++.|++.+.+. ..++.++.+|+.|++++.+++. +.|.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~--------~~~~~~~~~d~~d~~~~~~al~-------~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAED--------SPGVEIIQGDLFDPDSVKAALK-------GADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHH--------CTTEEEEESCTTCHHHHHHHHT-------TSSEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhccc--------ccccccceeeehhhhhhhhhhh-------hcchh
Confidence 6899999999999999999999 699999999887665 3578999999999988888776 69999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
|+++|.... + ...++.++..+++.+ ..++|++||....... ...+.+
T Consensus 65 i~~~~~~~~----------~------------~~~~~~~~~a~~~~~--~~~~v~~s~~~~~~~~-------~~~~~~-- 111 (183)
T PF13460_consen 65 IHAAGPPPK----------D------------VDAAKNIIEAAKKAG--VKRVVYLSSAGVYRDP-------PGLFSD-- 111 (183)
T ss_dssp EECCHSTTT----------H------------HHHHHHHHHHHHHTT--SSEEEEEEETTGTTTC-------TSEEEG--
T ss_pred hhhhhhhcc----------c------------ccccccccccccccc--cccceeeeccccCCCC-------Cccccc--
Confidence 999975321 0 334455555555554 3599999987654210 000000
Q ss_pred cccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhh
Q 015844 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPF 328 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 328 (399)
...+....|...|...+.+. + ..+++...++||.+..+. .. .......
T Consensus 112 -----------------~~~~~~~~~~~~~~~~e~~~----~----~~~~~~~ivrp~~~~~~~-~~-~~~~~~~----- 159 (183)
T PF13460_consen 112 -----------------EDKPIFPEYARDKREAEEAL----R----ESGLNWTIVRPGWIYGNP-SR-SYRLIKE----- 159 (183)
T ss_dssp -----------------GTCGGGHHHHHHHHHHHHHH----H----HSTSEEEEEEESEEEBTT-SS-SEEEESS-----
T ss_pred -----------------ccccchhhhHHHHHHHHHHH----H----hcCCCEEEEECcEeEeCC-Cc-ceeEEec-----
Confidence 01123356777765544332 1 238999999999997763 11 1111000
Q ss_pred HHHHhcCCCChHHHHHHHHHhhc
Q 015844 329 QKYITKGYVSEDEAGKRLAQVVS 351 (399)
Q Consensus 329 ~~~~~~~~~~pee~a~~v~~l~~ 351 (399)
........++.+|+|..++.++.
T Consensus 160 ~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 160 GGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp TSTTSHCEEEHHHHHHHHHHHHH
T ss_pred cCCCCcCcCCHHHHHHHHHHHhC
Confidence 00011246799999999998874
|
... |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=114.85 Aligned_cols=191 Identities=20% Similarity=0.208 Sum_probs=121.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++||||++|-||.++.+.|.++| +.|+.+.|+ .+|++|.+++.+++++. ++|+
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~---------------------~~dl~d~~~~~~~~~~~-----~pd~ 54 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERG-YEVIATSRS---------------------DLDLTDPEAVAKLLEAF-----KPDV 54 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT---------------------CS-TTSHHHHHHHHHHH-------SE
T ss_pred EEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch---------------------hcCCCCHHHHHHHHHHh-----CCCe
Confidence 69999999999999999999999 688888776 57999999999999876 6999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+||+... +.-..+.+..+.+|+.++.++.+.+... +.++|++||..-+-|.
T Consensus 55 Vin~aa~~~~-----~~ce~~p~~a~~iN~~~~~~la~~~~~~-------~~~li~~STd~VFdG~-------------- 108 (286)
T PF04321_consen 55 VINCAAYTNV-----DACEKNPEEAYAINVDATKNLAEACKER-------GARLIHISTDYVFDGD-------------- 108 (286)
T ss_dssp EEE------H-----HHHHHSHHHHHHHHTHHHHHHHHHHHHC-------T-EEEEEEEGGGS-SS--------------
T ss_pred EeccceeecH-----HhhhhChhhhHHHhhHHHHHHHHHHHHc-------CCcEEEeeccEEEcCC--------------
Confidence 9999998532 2234556788999999999999987643 3599999997655322
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
...+..+.....+...|+.+|...+...+... + ....+.++++-.+ -.. .+...+...
T Consensus 109 ----------~~~~y~E~d~~~P~~~YG~~K~~~E~~v~~~~-----~---~~~IlR~~~~~g~-~~~---~~~~~~~~~ 166 (286)
T PF04321_consen 109 ----------KGGPYTEDDPPNPLNVYGRSKLEGEQAVRAAC-----P---NALILRTSWVYGP-SGR---NFLRWLLRR 166 (286)
T ss_dssp ----------TSSSB-TTS----SSHHHHHHHHHHHHHHHH------S---SEEEEEE-SEESS-SSS---SHHHHHHHH
T ss_pred ----------cccccccCCCCCCCCHHHHHHHHHHHHHHHhc-----C---CEEEEecceeccc-CCC---chhhhHHHH
Confidence 11223344455677899999999777665411 1 5566778877654 111 111111111
Q ss_pred hHHH--------HhcCCCChHHHHHHHHHhhcCC
Q 015844 328 FQKY--------ITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 328 ~~~~--------~~~~~~~pee~a~~v~~l~~~~ 353 (399)
+... ........+++|+.+..++...
T Consensus 167 ~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~~~ 200 (286)
T PF04321_consen 167 LRQGEPIKLFDDQYRSPTYVDDLARVILELIEKN 200 (286)
T ss_dssp HHCTSEEEEESSCEE--EEHHHHHHHHHHHHHHH
T ss_pred HhcCCeeEeeCCceeCCEEHHHHHHHHHHHHHhc
Confidence 1100 0112356789999999888764
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-11 Score=112.26 Aligned_cols=184 Identities=22% Similarity=0.169 Sum_probs=129.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++.+++||||+|.||+++++.|.+++ ...|.+.+.......-..+........+.++.+|+.|..++.+.++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~------- 75 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQ------- 75 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhcc-------
Confidence 46799999999999999999999998 5588888876532111122222134678999999999998888776
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+. .+||+|....+ ..-..+.+..+++|+.|+.++++.+...-. .++|++||..-..+...
T Consensus 76 ~~-~Vvh~aa~~~~-----~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v------~~lIYtSs~~Vvf~g~~-------- 135 (361)
T KOG1430|consen 76 GA-VVVHCAASPVP-----DFVENDRDLAMRVNVNGTLNVIEACKELGV------KRLIYTSSAYVVFGGEP-------- 135 (361)
T ss_pred Cc-eEEEeccccCc-----cccccchhhheeecchhHHHHHHHHHHhCC------CEEEEecCceEEeCCee--------
Confidence 46 77777765422 223336778899999999999988876644 39999999877653211
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCC--hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFD--GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
-.+..+..+++ ....|+.||+--+.+++.... ..+....++.|-.|..|+-.
T Consensus 136 ---------------~~n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~----~~~l~T~aLR~~~IYGpgd~ 189 (361)
T KOG1430|consen 136 ---------------IINGDESLPYPLKHIDPYGESKALAEKLVLEANG----SDDLYTCALRPPGIYGPGDK 189 (361)
T ss_pred ---------------cccCCCCCCCccccccccchHHHHHHHHHHHhcC----CCCeeEEEEccccccCCCCc
Confidence 00111222333 335899999987777765553 34688999999999887543
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-10 Score=104.42 Aligned_cols=185 Identities=15% Similarity=0.160 Sum_probs=144.5
Q ss_pred CEEEEEcC-CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC--
Q 015844 87 GSVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR-- 163 (399)
Q Consensus 87 k~~lVTG~-s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g-- 163 (399)
.+|||.|. +.-|++.+|.-|-++| +.|++++.+.++.+....+- ...+.....|..++.++...+.++.+...
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRG-FIV~v~~~~~ed~~~ve~e~---~~dI~~L~ld~~~~~~~~~~l~~f~~~L~~p 79 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRG-FIVYVTVSSAEDEKYVESED---RPDIRPLWLDDSDPSSIHASLSRFASLLSRP 79 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCC-eEEEEEeCCHHHHHHHHhcc---CCCCCCcccCCCCCcchHHHHHHHHHHhcCC
Confidence 47899996 7999999999999999 69999999877655544432 24577788888888888777777665432
Q ss_pred ------------CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe-ccccc
Q 015844 164 ------------PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG-SITGN 230 (399)
Q Consensus 164 ------------~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS-S~~~~ 230 (399)
.+..||.......+.+++++++.+.|.+.++.|+.-++..++.++|+++.+...+.+||++. |+...
T Consensus 80 ~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~ss 159 (299)
T PF08643_consen 80 HVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSISSS 159 (299)
T ss_pred CCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchhhc
Confidence 45677766666557788999999999999999999999999999999998321134666665 54444
Q ss_pred cCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
. ..+..+.-.....++.+|++.|.+|+ .+.+|.|..|+.|.++-
T Consensus 160 l-----------------------------------~~PfhspE~~~~~al~~~~~~LrrEl-~~~~I~V~~i~LG~l~i 203 (299)
T PF08643_consen 160 L-----------------------------------NPPFHSPESIVSSALSSFFTSLRREL-RPHNIDVTQIKLGNLDI 203 (299)
T ss_pred c-----------------------------------CCCccCHHHHHHHHHHHHHHHHHHHh-hhcCCceEEEEeeeecc
Confidence 3 23455667788889999999999999 56799999999999876
Q ss_pred C
Q 015844 311 T 311 (399)
Q Consensus 311 ~ 311 (399)
.
T Consensus 204 ~ 204 (299)
T PF08643_consen 204 G 204 (299)
T ss_pred c
Confidence 5
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=106.97 Aligned_cols=184 Identities=22% Similarity=0.227 Sum_probs=117.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH---HHHHHHHHhc-------cCCCcEEEEEecCCC------HHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAG-------MAKENYTIMHLDLAS------LDS 150 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~---~~~~~~~~~~-------~~~~~~~~~~~Dvs~------~~~ 150 (399)
+++++|||||.||..+.+.|+.+--.+|+...|-.. ..+.+.+.+. ....+++.+..|++. ...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 479999999999999999888754237777777432 2223333332 335689999999983 334
Q ss_pred HHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc
Q 015844 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~ 230 (399)
.+++.+ .+|.||||++..... ..+.+....|+.|+..+++.+.-. + ...+.+|||++..
T Consensus 81 ~~~La~-------~vD~I~H~gA~Vn~v--------~pYs~L~~~NVlGT~evlrLa~~g--k----~Kp~~yVSsisv~ 139 (382)
T COG3320 81 WQELAE-------NVDLIIHNAALVNHV--------FPYSELRGANVLGTAEVLRLAATG--K----PKPLHYVSSISVG 139 (382)
T ss_pred HHHHhh-------hcceEEecchhhccc--------CcHHHhcCcchHhHHHHHHHHhcC--C----CceeEEEeeeeec
Confidence 444433 599999999986422 224567789999999999877532 1 1259999998765
Q ss_pred cCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
......+.... ++ ...+ ...........|+.||.+.+.+++.... .|+++..+.||+|-.
T Consensus 140 ~~~~~~~~~~~--~~------------~~~~-~~~~~~~~~~GY~~SKwvaE~Lvr~A~~-----rGLpv~I~Rpg~I~g 199 (382)
T COG3320 140 ETEYYSNFTVD--FD------------EISP-TRNVGQGLAGGYGRSKWVAEKLVREAGD-----RGLPVTIFRPGYITG 199 (382)
T ss_pred cccccCCCccc--cc------------cccc-cccccCccCCCcchhHHHHHHHHHHHhh-----cCCCeEEEecCeeec
Confidence 31111000000 00 0000 0011223456899999998877765543 399999999999954
Q ss_pred C
Q 015844 311 T 311 (399)
Q Consensus 311 ~ 311 (399)
+
T Consensus 200 d 200 (382)
T COG3320 200 D 200 (382)
T ss_pred c
Confidence 4
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=114.60 Aligned_cols=128 Identities=17% Similarity=0.168 Sum_probs=89.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcC--CcEEEEeecChH---HHHHHHHHh---------cc-C--------CCcEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETG--KWHIIMACRDFL---KAERAAKSA---------GM-A--------KENYT 139 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~G--a~~vv~~~r~~~---~~~~~~~~~---------~~-~--------~~~~~ 139 (399)
.++||+++||||||.||..+++.|++.+ ..+|+++.|... ..+.+..++ .. . ..++.
T Consensus 8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~ 87 (491)
T PLN02996 8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVT 87 (491)
T ss_pred HhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence 5789999999999999999999998754 246888888642 111111111 00 0 15789
Q ss_pred EEEecCCC-------HHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHh
Q 015844 140 IMHLDLAS-------LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLK 212 (399)
Q Consensus 140 ~~~~Dvs~-------~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 212 (399)
++.+|+++ .+.++.+++ .+|+|||+|+.... .+..+..+++|+.|+.++++++...-
T Consensus 88 ~i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~~- 151 (491)
T PLN02996 88 PVPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNF--------DERYDVALGINTLGALNVLNFAKKCV- 151 (491)
T ss_pred EEecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCC--------cCCHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 99999984 344444443 59999999997531 12457788999999999999876431
Q ss_pred hCCCCCceEEEEeccccc
Q 015844 213 QSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 213 ~~~~~~g~iV~vSS~~~~ 230 (399)
. -.++|++||...+
T Consensus 152 ~----~k~~V~vST~~vy 165 (491)
T PLN02996 152 K----VKMLLHVSTAYVC 165 (491)
T ss_pred C----CCeEEEEeeeEEe
Confidence 1 1389999987654
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=102.69 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=117.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
+|||||+|.||.++++.|++.| ++|+.++|+........ ... ..|+.. ... .+....+|+|
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~--------~~~--~~~~~~-~~~-------~~~~~~~D~V 61 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRSPPAGANTK--------WEG--YKPWAP-LAE-------SEALEGADAV 61 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCCCCCCCccc--------cee--eecccc-cch-------hhhcCCCCEE
Confidence 6899999999999999999999 59999999865432110 001 112222 111 1223479999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
||+||...... ..+.+.....+++|+.++.++++++...-.+ ...+|+.|+. +..+...+
T Consensus 62 vh~a~~~~~~~---~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~----~~~~i~~S~~-~~yg~~~~------------ 121 (292)
T TIGR01777 62 INLAGEPIADK---RWTEERKQEIRDSRIDTTRALVEAIAAAEQK----PKVFISASAV-GYYGTSED------------ 121 (292)
T ss_pred EECCCCCcccc---cCCHHHHHHHHhcccHHHHHHHHHHHhcCCC----ceEEEEeeeE-EEeCCCCC------------
Confidence 99999743221 2244455678899999998888887543110 1133433333 22211000
Q ss_pred cccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhh
Q 015844 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPF 328 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 328 (399)
.+..+..+..+...|+..+...+...+ .+ ...++.+..+.|+.|..+.. .........+....
T Consensus 122 -----------~~~~E~~~~~~~~~~~~~~~~~e~~~~----~~-~~~~~~~~ilR~~~v~G~~~-~~~~~~~~~~~~~~ 184 (292)
T TIGR01777 122 -----------RVFTEEDSPAGDDFLAELCRDWEEAAQ----AA-EDLGTRVVLLRTGIVLGPKG-GALAKMLPPFRLGL 184 (292)
T ss_pred -----------CCcCcccCCCCCChHHHHHHHHHHHhh----hc-hhcCCceEEEeeeeEECCCc-chhHHHHHHHhcCc
Confidence 011111111122223333333222222 22 23489999999999987631 11111000000000
Q ss_pred -HHH----HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 329 -QKY----ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 329 -~~~----~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
... ....++..+|+|+.+..++..+. ..|.|.-.+
T Consensus 185 ~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~--~~g~~~~~~ 224 (292)
T TIGR01777 185 GGPLGSGRQWFSWIHIEDLVQLILFALENAS--ISGPVNATA 224 (292)
T ss_pred ccccCCCCcccccEeHHHHHHHHHHHhcCcc--cCCceEecC
Confidence 000 01246789999999999987643 346655433
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=103.18 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=130.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH--H--HHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE--R--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~--~--~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+|++||||-+|-=|..+|+.|++.| +.|..+.|...... . +.+.--..+.+++.+.+|++|..++.++++.+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v--- 77 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV--- 77 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcC-cEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc---
Confidence 6899999999999999999999999 59999887632211 1 11111122446889999999999999999987
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
.+|-|.|.|+.... ..+.++.+.+.+++..|+.+|+.++--.-.+ ..+|..-||.- .+|.
T Consensus 78 --~PdEIYNLaAQS~V-----~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~----~~rfYQAStSE-~fG~-------- 137 (345)
T COG1089 78 --QPDEIYNLAAQSHV-----GVSFEQPEYTADVDAIGTLRLLEAIRILGEK----KTRFYQASTSE-LYGL-------- 137 (345)
T ss_pred --Cchhheeccccccc-----cccccCcceeeeechhHHHHHHHHHHHhCCc----ccEEEecccHH-hhcC--------
Confidence 79999999987543 3467777889999999999999987544321 24677666543 2211
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc--cCCceEEEEeeCC
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPG 306 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~gi~v~~v~PG 306 (399)
....+..+..|+.+.++|+++|..-..++......|. +..||-+|.=+|.
T Consensus 138 ---------------v~~~pq~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~ 189 (345)
T COG1089 138 ---------------VQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPL 189 (345)
T ss_pred ---------------cccCccccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCC
Confidence 1223445667889999999999987777766665552 3456777755553
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-10 Score=116.82 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=116.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+++||||+|+||.++++.|+++| +.|++++|+.... . ..++.++.+|++|.+++.++++ .+|+
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R~~~~~------~---~~~v~~v~gDL~D~~~l~~al~-------~vD~ 64 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG-HEVVGIARHRPDS------W---PSSADFIAADIRDATAVESAMT-------GADV 64 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCchhh------c---ccCceEEEeeCCCHHHHHHHHh-------CCCE
Confidence 69999999999999999999999 5999999874321 1 1247789999999999888775 4899
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+|+.... .+++|+.++.++++++.. .+ .++||++||..
T Consensus 65 VVHlAa~~~~--------------~~~vNv~GT~nLLeAa~~----~g--vkr~V~iSS~~------------------- 105 (854)
T PRK05865 65 VAHCAWVRGR--------------NDHINIDGTANVLKAMAE----TG--TGRIVFTSSGH------------------- 105 (854)
T ss_pred EEECCCcccc--------------hHHHHHHHHHHHHHHHHH----cC--CCeEEEECCcH-------------------
Confidence 9999985311 357899999888776543 22 25899998720
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
|.+.+.+. .+ .++.+..+.|+.|..+.... ....+..
T Consensus 106 ------------------------------K~aaE~ll----~~----~gl~~vILRp~~VYGP~~~~----~i~~ll~- 142 (854)
T PRK05865 106 ------------------------------QPRVEQML----AD----CGLEWVAVRCALIFGRNVDN----WVQRLFA- 142 (854)
T ss_pred ------------------------------HHHHHHHH----HH----cCCCEEEEEeceEeCCChHH----HHHHHhc-
Confidence 65555443 22 38999999999998774211 1111100
Q ss_pred hHHHHh------cCCCChHHHHHHHHHhhcCC
Q 015844 328 FQKYIT------KGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 328 ~~~~~~------~~~~~pee~a~~v~~l~~~~ 353 (399)
...... ..++..+|+|++++.++...
T Consensus 143 ~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~ 174 (854)
T PRK05865 143 LPVLPAGYADRVVQVVHSDDAQRLLVRALLDT 174 (854)
T ss_pred CceeccCCCCceEeeeeHHHHHHHHHHHHhCC
Confidence 000010 12577899999999887543
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=103.25 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=92.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+|.||..+++.|+++| +.|+... .|+.|.+.+...++.. ++|
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~~~------------------------~~~~~~~~v~~~l~~~-----~~D 59 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQG-IDFHYGS------------------------GRLENRASLEADIDAV-----KPT 59 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhCC-CEEEEec------------------------CccCCHHHHHHHHHhc-----CCC
Confidence 579999999999999999999999 4776421 3455666665555432 689
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+||...... . +...++....+++|+.++.++++++...- .+++++||...+. .... .|..
T Consensus 60 ~ViH~Aa~~~~~~-~-~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g-------v~~v~~sS~~vy~-~~~~-~p~~----- 123 (298)
T PLN02778 60 HVFNAAGVTGRPN-V-DWCESHKVETIRANVVGTLTLADVCRERG-------LVLTNYATGCIFE-YDDA-HPLG----- 123 (298)
T ss_pred EEEECCcccCCCC-c-hhhhhCHHHHHHHHHHHHHHHHHHHHHhC-------CCEEEEecceEeC-CCCC-CCcc-----
Confidence 9999999863211 1 11224556789999999999999986541 2455666543221 1000 0000
Q ss_pred cccccCCCCCCCCCCCCCC-CCCChhhhHHHhHHHHHHHHHHHHH
Q 015844 247 LRGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHR 290 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~a~~~~~~~la~ 290 (399)
...+..+. .+.+....|+.||.+.+.+++.++.
T Consensus 124 -----------~~~~~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~ 157 (298)
T PLN02778 124 -----------SGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYEN 157 (298)
T ss_pred -----------cCCCCCcCCCCCCCCCchHHHHHHHHHHHHHhhc
Confidence 00001111 1223346799999999998877653
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-09 Score=84.22 Aligned_cols=219 Identities=14% Similarity=0.150 Sum_probs=143.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC--
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-- 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-- 162 (399)
+.++++|-||-|.+|.+++..|-.++ +-|.-++-.+.+.. ..-+.+..|-+=.++-+.+++++-+..
T Consensus 2 sagrVivYGGkGALGSacv~~Fkann-ywV~siDl~eNe~A----------d~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 2 SAGRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSENEQA----------DSSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred CCceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeecccccc----------cceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 34579999999999999999999999 57777765532211 112344455554566667777766543
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.++|.|++-||.......-..--...-+-++...+.....-.+.+..+++. +|-+-..+--++.
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~----GGLL~LtGAkaAl------------ 134 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP----GGLLQLTGAKAAL------------ 134 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC----Cceeeeccccccc------------
Confidence 479999999998643221100011223344555555555555666666654 3444443333332
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCccccchhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.+.|++..|+.+|+|+..++++|+.+-. -+.|--+.+|-|=..+|||. +...|..
T Consensus 135 -----------------------~gTPgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMN-RKwMP~A 190 (236)
T KOG4022|consen 135 -----------------------GGTPGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMN-RKWMPNA 190 (236)
T ss_pred -----------------------CCCCcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccc-cccCCCC
Confidence 3568899999999999999999998742 24577889999999999954 4444422
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
.+ ..+.+.+++++..+....+.+.-.+|..+.+
T Consensus 191 Df----------ssWTPL~fi~e~flkWtt~~~RPssGsLlqi 223 (236)
T KOG4022|consen 191 DF----------SSWTPLSFISEHFLKWTTETSRPSSGSLLQI 223 (236)
T ss_pred cc----------cCcccHHHHHHHHHHHhccCCCCCCCceEEE
Confidence 11 2245668888888888877777778887754
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=97.25 Aligned_cols=253 Identities=17% Similarity=0.224 Sum_probs=161.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+.++||||.|.||...+..++..-- .+.+.++. +--.-....++.. ...+..++..|+.+...+..++.. .+
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~-n~p~ykfv~~di~~~~~~~~~~~~-----~~ 80 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVR-NSPNYKFVEGDIADADLVLYLFET-----EE 80 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhc-cCCCceEeeccccchHHHHhhhcc-----Cc
Confidence 7899999999999999999987531 24443332 1000011112221 235788999999999988877763 48
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|.|+|-|.....+. +.-+--.....|++++..|++.......- -++|.+|+-..+..+.....
T Consensus 81 id~vihfaa~t~vd~-----s~~~~~~~~~nnil~t~~Lle~~~~sg~i-----~~fvhvSTdeVYGds~~~~~------ 144 (331)
T KOG0747|consen 81 IDTVIHFAAQTHVDR-----SFGDSFEFTKNNILSTHVLLEAVRVSGNI-----RRFVHVSTDEVYGDSDEDAV------ 144 (331)
T ss_pred hhhhhhhHhhhhhhh-----hcCchHHHhcCCchhhhhHHHHHHhccCe-----eEEEEecccceecCcccccc------
Confidence 999999999865432 22223345778999999999988766432 38999998766532111000
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc-chhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPLFRL 323 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~ 323 (399)
..+.....+..+|++||+|.+++.+++.+.| |+.+..+.-+.|..|...... .|.+-.
T Consensus 145 -----------------~~E~s~~nPtnpyAasKaAaE~~v~Sy~~sy----~lpvv~~R~nnVYGP~q~~~klipkFi~ 203 (331)
T KOG0747|consen 145 -----------------VGEASLLNPTNPYAASKAAAEMLVRSYGRSY----GLPVVTTRMNNVYGPNQYPEKLIPKFIK 203 (331)
T ss_pred -----------------ccccccCCCCCchHHHHHHHHHHHHHHhhcc----CCcEEEEeccCccCCCcChHHHhHHHHH
Confidence 0022234567789999999999999999887 899999999999988544322 221111
Q ss_pred hchhhHHHH-------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHHHH
Q 015844 324 LFPPFQKYI-------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEK 394 (399)
Q Consensus 324 ~~~~~~~~~-------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~~ 394 (399)
+.......+ .+.++-.+|+++++..++... ..|+.+...- ..+....++++.+-++.+.
T Consensus 204 l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~Kg---~~geIYNIgt---------d~e~~~~~l~k~i~eli~~ 269 (331)
T KOG0747|consen 204 LAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEKG---ELGEIYNIGT---------DDEMRVIDLAKDICELFEK 269 (331)
T ss_pred HHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhcC---CccceeeccC---------cchhhHHHHHHHHHHHHHH
Confidence 111111111 123567999999998887663 2577776543 2334455566555555444
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-09 Score=116.99 Aligned_cols=240 Identities=18% Similarity=0.200 Sum_probs=134.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcC---CcEEEEeecChHHH---HHHHHHhccC-------CCcEEEEEecCCCHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETG---KWHIIMACRDFLKA---ERAAKSAGMA-------KENYTIMHLDLASLDSV 151 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~G---a~~vv~~~r~~~~~---~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v 151 (399)
..++++|||++|.||..+++.|+++| ..+|+...|+.... +...+..... ..++.++.+|++++.--
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35799999999999999999999876 34888888874322 2222211111 13688999999854210
Q ss_pred --HHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 152 --RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 152 --~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
....+++. ..+|++||||+.... ..+ +.....+|+.|+.++++.+... + ..+++++||.+.
T Consensus 1050 l~~~~~~~l~---~~~d~iiH~Aa~~~~-----~~~---~~~~~~~nv~gt~~ll~~a~~~----~--~~~~v~vSS~~v 1112 (1389)
T TIGR03443 1050 LSDEKWSDLT---NEVDVIIHNGALVHW-----VYP---YSKLRDANVIGTINVLNLCAEG----K--AKQFSFVSSTSA 1112 (1389)
T ss_pred cCHHHHHHHH---hcCCEEEECCcEecC-----ccC---HHHHHHhHHHHHHHHHHHHHhC----C--CceEEEEeCeee
Confidence 11122222 269999999997531 112 3344567999999999887532 1 238999999865
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
+.... .. ...+ .....+-...................|+.||.+.+.+++..+. .|++++.+.||.|.
T Consensus 1113 ~~~~~--~~----~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-----~g~~~~i~Rpg~v~ 1180 (1389)
T TIGR03443 1113 LDTEY--YV----NLSD-ELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-----RGLRGCIVRPGYVT 1180 (1389)
T ss_pred cCccc--cc----chhh-hhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-----CCCCEEEECCCccc
Confidence 52110 00 0000 0000000000000000001112234699999998888765432 38999999999997
Q ss_pred CCCCccccchhhhhhchhhHH------HH----hcCCCChHHHHHHHHHhhcCCC
Q 015844 310 TTGLFREHIPLFRLLFPPFQK------YI----TKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 310 T~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~pee~a~~v~~l~~~~~ 354 (399)
.+........ ...+...... .+ ..-++..++++++++.++..+.
T Consensus 1181 G~~~~g~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~ 1234 (1389)
T TIGR03443 1181 GDSKTGATNT-DDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPP 1234 (1389)
T ss_pred cCCCcCCCCc-hhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCc
Confidence 6522111110 0111111111 11 1225678999999999876543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=87.58 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=71.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+++||||+ |+|.++++.|+++|+ +|++.+|+.+..+.+...+.. ..++.++.+|++|.+++.++++.+.+.++++|+
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G~-~V~v~~R~~~~~~~l~~~l~~-~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~ 78 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKGF-HVSVIARREVKLENVKRESTT-PESITPLPLDYHDDDALKLAIKSTIEKNGPFDL 78 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHhhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence 68999998 788889999999995 999999998776666554532 457888999999999999999999988899999
Q ss_pred EEecCcc
Q 015844 168 LVCNAAV 174 (399)
Q Consensus 168 lv~nAg~ 174 (399)
+|+..-.
T Consensus 79 lv~~vh~ 85 (177)
T PRK08309 79 AVAWIHS 85 (177)
T ss_pred EEEeccc
Confidence 9987654
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-10 Score=102.69 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=77.1
Q ss_pred EEEEEcC-CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~-s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+=.||.. +||||+++|+.|+++|+ +|+++++... +.... ...||+++.++++++++.+.+.++++|
T Consensus 16 VR~itN~SSGgIG~AIA~~la~~Ga-~Vvlv~~~~~--------l~~~~----~~~~Dv~d~~s~~~l~~~v~~~~g~iD 82 (227)
T TIGR02114 16 VRSITNHSTGHLGKIITETFLSAGH-EVTLVTTKRA--------LKPEP----HPNLSIREIETTKDLLITLKELVQEHD 82 (227)
T ss_pred ceeecCCcccHHHHHHHHHHHHCCC-EEEEEcChhh--------ccccc----CCcceeecHHHHHHHHHHHHHHcCCCC
Confidence 4456655 68999999999999996 8888876311 11100 245899999999999999999999999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHH
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 205 (399)
++|||||+. ...++.+.+.++|++++. .+.|++.+
T Consensus 83 iLVnnAgv~-d~~~~~~~s~e~~~~~~~---~~~~~~~~ 117 (227)
T TIGR02114 83 ILIHSMAVS-DYTPVYMTDLEQVQASDN---LNEFLSKQ 117 (227)
T ss_pred EEEECCEec-cccchhhCCHHHHhhhcc---hhhhhccc
Confidence 999999986 446677889999998744 45555554
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-09 Score=106.80 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=89.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCC--cEEEEeecChH---HHHHHHHHh---------cc-C--------CCcEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFL---KAERAAKSA---------GM-A--------KENYT 139 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga--~~vv~~~r~~~---~~~~~~~~~---------~~-~--------~~~~~ 139 (399)
.+++|+++||||+|.||..+++.|++.+. .+|+++.|... ..+.+.+++ ++ . ..++.
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 56899999999999999999999998652 37888888532 122221111 11 0 24689
Q ss_pred EEEecCCCHH------HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhh
Q 015844 140 IMHLDLASLD------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQ 213 (399)
Q Consensus 140 ~~~~Dvs~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~ 213 (399)
++.+|++++. ..+.+.+ .+|+|||+|+.... .+.++..+++|+.|+.++++.+...- .
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~f--------~~~~~~a~~vNV~GT~nLLelA~~~~-~ 259 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTTF--------DERYDVAIDINTRGPCHLMSFAKKCK-K 259 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHh-------cCCEEEECcccccc--------ccCHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 9999999872 3333222 59999999997531 13467789999999999999876531 1
Q ss_pred CCCCCceEEEEeccccc
Q 015844 214 SDYPSKRLIIVGSITGN 230 (399)
Q Consensus 214 ~~~~~g~iV~vSS~~~~ 230 (399)
..++|++||...+
T Consensus 260 ----lk~fV~vSTayVy 272 (605)
T PLN02503 260 ----LKLFLQVSTAYVN 272 (605)
T ss_pred ----CCeEEEccCceee
Confidence 1379999886544
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=98.97 Aligned_cols=205 Identities=18% Similarity=0.188 Sum_probs=115.6
Q ss_pred CCCEEEEE----cCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH-------HHhccCCCcEEEEEecCCCHHHHHH
Q 015844 85 RKGSVIIT----GASSGLGLATAKALAETGKWHIIMACRDFLKAERAA-------KSAGMAKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 85 ~~k~~lVT----G~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~Dvs~~~~v~~ 153 (399)
..++|||| ||+|.||..+++.|+++| +.|+++.|+........ .++.. ..+.++.+|+.| +..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~l~~--~~v~~v~~D~~d---~~~ 124 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSELSS--AGVKTVWGDPAD---VKS 124 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhHhhh--cCceEEEecHHH---HHh
Confidence 34689999 999999999999999999 69999999864422111 11111 236788899876 333
Q ss_pred HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
++. ...+|+|||+++.. ..++..++++ +++.+ -.+||++||...+. .
T Consensus 125 ~~~-----~~~~d~Vi~~~~~~---------------------~~~~~~ll~a----a~~~g--vkr~V~~SS~~vyg-~ 171 (378)
T PLN00016 125 KVA-----GAGFDVVYDNNGKD---------------------LDEVEPVADW----AKSPG--LKQFLFCSSAGVYK-K 171 (378)
T ss_pred hhc-----cCCccEEEeCCCCC---------------------HHHHHHHHHH----HHHcC--CCEEEEEccHhhcC-C
Confidence 331 13699999986521 1122233333 33332 24899999975442 1
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
... .+..+..+..+ +. +|...+.+.+ + .++.++.+.|+++..+..
T Consensus 172 ~~~-----------------------~p~~E~~~~~p---~~-sK~~~E~~l~----~----~~l~~~ilRp~~vyG~~~ 216 (378)
T PLN00016 172 SDE-----------------------PPHVEGDAVKP---KA-GHLEVEAYLQ----K----LGVNWTSFRPQYIYGPGN 216 (378)
T ss_pred CCC-----------------------CCCCCCCcCCC---cc-hHHHHHHHHH----H----cCCCeEEEeceeEECCCC
Confidence 000 00111111111 11 6877665432 2 388999999999987743
Q ss_pred ccccchh-hhhhch--hhHHHHh-----cCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 314 FREHIPL-FRLLFP--PFQKYIT-----KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 314 ~~~~~~~-~~~~~~--~~~~~~~-----~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
....... ...+.. .+ ..+. ..++..+|+|+.++.++..+.. .|..+.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~i-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~--~~~~yni~~ 274 (378)
T PLN00016 217 NKDCEEWFFDRLVRGRPV-PIPGSGIQLTQLGHVKDLASMFALVVGNPKA--AGQIFNIVS 274 (378)
T ss_pred CCchHHHHHHHHHcCCce-eecCCCCeeeceecHHHHHHHHHHHhcCccc--cCCEEEecC
Confidence 2211111 010000 00 0010 1245789999999998876532 345554443
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=95.62 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=60.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC-cc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP-LD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~-id 166 (399)
+++||||+|.||..+++.|++.| +.|.++.|+.++.. . ..+..+.+|+.|++++..+++.. +.... +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~~~~~~-------~--~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSSA-------G--PNEKHVKFDWLDEDTWDNPFSSD-DGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCCCcccc-------C--CCCccccccCCCHHHHHHHHhcc-cCcCCcee
Confidence 38999999999999999999999 59999999875431 1 23556789999999999888643 22334 99
Q ss_pred EEEecCcc
Q 015844 167 VLVCNAAV 174 (399)
Q Consensus 167 ~lv~nAg~ 174 (399)
.++++++.
T Consensus 70 ~v~~~~~~ 77 (285)
T TIGR03649 70 AVYLVAPP 77 (285)
T ss_pred EEEEeCCC
Confidence 99998764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=106.79 Aligned_cols=160 Identities=10% Similarity=0.009 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
..+++|||||+|-||.++++.|.++|. .|.. ...|++|.+.+..++... +
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~-~v~~------------------------~~~~l~d~~~v~~~i~~~-----~ 428 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI-AYEY------------------------GKGRLEDRSSLLADIRNV-----K 428 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC-eEEe------------------------eccccccHHHHHHHHHhh-----C
Confidence 345799999999999999999999994 6521 124688888887777653 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+|+..... .. +...++....+++|+.++.++++++... +.++|++||...+-+.. . .+..
T Consensus 429 pd~Vih~Aa~~~~~-~~-~~~~~~~~~~~~~N~~gt~~l~~a~~~~-------g~~~v~~Ss~~v~~~~~-~-~~~~--- 494 (668)
T PLN02260 429 PTHVFNAAGVTGRP-NV-DWCESHKVETIRANVVGTLTLADVCREN-------GLLMMNFATGCIFEYDA-K-HPEG--- 494 (668)
T ss_pred CCEEEECCcccCCC-CC-ChHHhCHHHHHHHHhHHHHHHHHHHHHc-------CCeEEEEcccceecCCc-c-cccc---
Confidence 99999999976321 11 2234456788999999999999998753 13567776643321100 0 0000
Q ss_pred cccccccCCCCCCCCCCCCCC-CCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeC
Q 015844 245 GDLRGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 305 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~P 305 (399)
...+..+. .+.+....|+.||.+.+.+++.+... ..+|+..+..
T Consensus 495 -------------~~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~~----~~~r~~~~~~ 539 (668)
T PLN02260 495 -------------SGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDNV----CTLRVRMPIS 539 (668)
T ss_pred -------------cCCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhhh----eEEEEEEecc
Confidence 00011121 12233468999999999988776432 3677766653
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=102.24 Aligned_cols=155 Identities=16% Similarity=0.112 Sum_probs=108.9
Q ss_pred EEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEEe
Q 015844 91 ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 170 (399)
Q Consensus 91 VTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~ 170 (399)
|+||++|+|.++++.|...|+ .|+.+.+...+. ......+++.+|.
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~---------------------------------~~~~~~~~~~~~~ 88 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGY-DVVANNDGGLTW---------------------------------AAGWGDRFGALVF 88 (450)
T ss_pred EEccCchhHHHHHHHHhhCCC-eeeecCcccccc---------------------------------ccCcCCcccEEEE
Confidence 678889999999999999996 888776653310 0000124554443
Q ss_pred cCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccc
Q 015844 171 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGF 250 (399)
Q Consensus 171 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~ 250 (399)
-+-.. .+.++ +.+.+.+++..++.|.. +|+||+++|..+..
T Consensus 89 d~~~~--------~~~~~--------l~~~~~~~~~~l~~l~~----~griv~i~s~~~~~------------------- 129 (450)
T PRK08261 89 DATGI--------TDPAD--------LKALYEFFHPVLRSLAP----CGRVVVLGRPPEAA------------------- 129 (450)
T ss_pred ECCCC--------CCHHH--------HHHHHHHHHHHHHhccC----CCEEEEEccccccC-------------------
Confidence 22111 01222 22445667777777754 47999999876542
Q ss_pred cCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHH
Q 015844 251 AGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQK 330 (399)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 330 (399)
....|+.+|+++.++++.++.|+ ..+|++++|.|+.
T Consensus 130 -------------------~~~~~~~akaal~gl~rsla~E~--~~gi~v~~i~~~~----------------------- 165 (450)
T PRK08261 130 -------------------ADPAAAAAQRALEGFTRSLGKEL--RRGATAQLVYVAP----------------------- 165 (450)
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHHh--hcCCEEEEEecCC-----------------------
Confidence 22359999999999999999998 3599999998874
Q ss_pred HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 331 YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 331 ~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..+++++..+.|+++....+.+|+.+..++..
T Consensus 166 ------~~~~~~~~~~~~l~s~~~a~~~g~~i~~~~~~ 197 (450)
T PRK08261 166 ------GAEAGLESTLRFFLSPRSAYVSGQVVRVGAAD 197 (450)
T ss_pred ------CCHHHHHHHHHHhcCCccCCccCcEEEecCCc
Confidence 25678888889999988888999988877743
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=101.20 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=76.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|.||.++++.|.++| +.|++++|..... ....+.++.+|+++.. +.+++. .+|+
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~~---------~~~~ve~v~~Dl~d~~-l~~al~-------~~D~ 63 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHDA---------LDPRVDYVCASLRNPV-LQELAG-------EADA 63 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhhc---------ccCCceEEEccCCCHH-HHHHhc-------CCCE
Confidence 69999999999999999999999 5999999864321 1235778999999973 433332 5899
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
|||+|+.. .. . ...+|+.|+.++++++.. . +.+||++||..
T Consensus 64 VIHLAa~~-~~------~------~~~vNv~Gt~nLleAA~~----~---GvRiV~~SS~~ 104 (699)
T PRK12320 64 VIHLAPVD-TS------A------PGGVGITGLAHVANAAAR----A---GARLLFVSQAA 104 (699)
T ss_pred EEEcCccC-cc------c------hhhHHHHHHHHHHHHHHH----c---CCeEEEEECCC
Confidence 99999863 11 1 124799999998887743 2 24899998763
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-08 Score=87.05 Aligned_cols=180 Identities=16% Similarity=0.144 Sum_probs=118.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+..++.+++||||+|.||.++++.|..+| +.|++.+.-... -+.+...+. ..++..+.-|+..+ ++.
T Consensus 23 ~p~~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg~k~n~~~~~~--~~~fel~~hdv~~p-----l~~---- 90 (350)
T KOG1429|consen 23 KPSQNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTGRKENLEHWIG--HPNFELIRHDVVEP-----LLK---- 90 (350)
T ss_pred cCCCCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEecccccchhhcchhcc--CcceeEEEeechhH-----HHH----
Confidence 34567899999999999999999999999 799988753322 222222222 23556666676554 333
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|.++|.|....+.... ..-.+++.+|+.++.+++..+.... .|++..|+.--+ |.+--.+-.
T Consensus 91 ---evD~IyhLAapasp~~y~-----~npvktIktN~igtln~lglakrv~-------aR~l~aSTseVY-gdp~~hpq~ 154 (350)
T KOG1429|consen 91 ---EVDQIYHLAAPASPPHYK-----YNPVKTIKTNVIGTLNMLGLAKRVG-------ARFLLASTSEVY-GDPLVHPQV 154 (350)
T ss_pred ---HhhhhhhhccCCCCcccc-----cCccceeeecchhhHHHHHHHHHhC-------ceEEEeeccccc-CCcccCCCc
Confidence 488899999876543211 1234678899999999998876653 388887775544 221100001
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
...|++ ..+..+..+|...|...+.|+.+..++. ||.|....+-.+..|
T Consensus 155 e~ywg~------------------vnpigpr~cydegKr~aE~L~~~y~k~~----giE~rIaRifNtyGP 203 (350)
T KOG1429|consen 155 ETYWGN------------------VNPIGPRSCYDEGKRVAETLCYAYHKQE----GIEVRIARIFNTYGP 203 (350)
T ss_pred cccccc------------------cCcCCchhhhhHHHHHHHHHHHHhhccc----CcEEEEEeeecccCC
Confidence 111221 2356788999999999888888777664 888777776655555
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=90.47 Aligned_cols=212 Identities=14% Similarity=0.190 Sum_probs=114.7
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
++||||||-||++++.+|.+.| +.|+++.|+..+.+.... .. +...+.+.+..+ .++|+|
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~iltR~~~~~~~~~~------~~-------v~~~~~~~~~~~------~~~Dav 60 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILTRRPPKASQNLH------PN-------VTLWEGLADALT------LGIDAV 60 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEEcCCcchhhhcC------cc-------ccccchhhhccc------CCCCEE
Confidence 5899999999999999999999 799999998765443211 01 111122222211 169999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
||-||........ +.+.=+.. +.+-+..++.+.....+.+.+ .++..-+|..|++|....
T Consensus 61 INLAG~~I~~rrW---t~~~K~~i----~~SRi~~T~~L~e~I~~~~~~-P~~~isaSAvGyYG~~~~------------ 120 (297)
T COG1090 61 INLAGEPIAERRW---TEKQKEEI----RQSRINTTEKLVELIAASETK-PKVLISASAVGYYGHSGD------------ 120 (297)
T ss_pred EECCCCccccccC---CHHHHHHH----HHHHhHHHHHHHHHHHhccCC-CcEEEecceEEEecCCCc------------
Confidence 9999986433322 44433333 345666677777666654432 344444666777643110
Q ss_pred cccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhh--ccCCceEEEEeeCCcccCCC--Cccccchhhhhh
Q 015844 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF--HEETGIAFASLYPGCIATTG--LFREHIPLFRLL 324 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~--~~~~gi~v~~v~PG~v~T~~--~~~~~~~~~~~~ 324 (399)
..+.|..+... . .+..+++.+-.+- .+..|+||+.+.-|+|..+. ......+.++..
T Consensus 121 -----------~~~tE~~~~g~--~------Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~g 181 (297)
T COG1090 121 -----------RVVTEESPPGD--D------FLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLG 181 (297)
T ss_pred -----------eeeecCCCCCC--C------hHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCcchhhhcchhhhc
Confidence 11111111110 0 1112222222221 03459999999999997741 111111111111
Q ss_pred c-hhhHH-HHhcCCCChHHHHHHHHHhhcCCCCCCCceE
Q 015844 325 F-PPFQK-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVY 361 (399)
Q Consensus 325 ~-~~~~~-~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~ 361 (399)
. .++.. --.-.++..||..+.|.|++.++. ++|.|
T Consensus 182 lGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~--lsGp~ 218 (297)
T COG1090 182 LGGKLGSGRQWFSWIHIEDLVNAILFLLENEQ--LSGPF 218 (297)
T ss_pred cCCccCCCCceeeeeeHHHHHHHHHHHHhCcC--CCCcc
Confidence 1 00000 000125789999999999998864 35554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-07 Score=83.64 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=117.8
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
|+|+||+|.+|+.+++.|++.| +.|.++.|+..+ ...+.++..| +.++.+|+.|.+++.++++ .+|.|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~l~R~~~~--~~~~~l~~~g--~~vv~~d~~~~~~l~~al~-------g~d~v 68 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRALVRDPSS--DRAQQLQALG--AEVVEADYDDPESLVAALK-------GVDAV 68 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEEEESSSHH--HHHHHHHHTT--TEEEES-TT-HHHHHHHHT-------TCSEE
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEEEEeccch--hhhhhhhccc--ceEeecccCCHHHHHHHHc-------CCceE
Confidence 6899999999999999999988 699999998732 2223333333 3567999999999988887 69999
Q ss_pred EecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccc
Q 015844 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (399)
Q Consensus 169 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (399)
|++-+... ..+ .....++++++...-. .+|| .||.......
T Consensus 69 ~~~~~~~~---------~~~--------~~~~~~li~Aa~~agV------k~~v-~ss~~~~~~~--------------- 109 (233)
T PF05368_consen 69 FSVTPPSH---------PSE--------LEQQKNLIDAAKAAGV------KHFV-PSSFGADYDE--------------- 109 (233)
T ss_dssp EEESSCSC---------CCH--------HHHHHHHHHHHHHHT-------SEEE-ESEESSGTTT---------------
T ss_pred EeecCcch---------hhh--------hhhhhhHHHhhhcccc------ceEE-EEEecccccc---------------
Confidence 98887542 111 1223445566655432 2676 4655433100
Q ss_pred cccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh----
Q 015844 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL---- 324 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~---- 324 (399)
.....+....| ..|..++.+. ++ .++..+.|.||+.... +.....+.....
T Consensus 110 ---------------~~~~~p~~~~~-~~k~~ie~~l----~~----~~i~~t~i~~g~f~e~-~~~~~~~~~~~~~~~~ 164 (233)
T PF05368_consen 110 ---------------SSGSEPEIPHF-DQKAEIEEYL----RE----SGIPYTIIRPGFFMEN-LLPPFAPVVDIKKSKD 164 (233)
T ss_dssp ---------------TTTSTTHHHHH-HHHHHHHHHH----HH----CTSEBEEEEE-EEHHH-HHTTTHHTTCSCCTSS
T ss_pred ---------------cccccccchhh-hhhhhhhhhh----hh----ccccceeccccchhhh-hhhhhcccccccccce
Confidence 00112223333 4566544333 22 3889999999987532 222111100000
Q ss_pred -chhhHHHH-hcCC-CChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 325 -FPPFQKYI-TKGY-VSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 325 -~~~~~~~~-~~~~-~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
........ ...+ .+.+|+|+.++.++.++..+..|.++...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~~ 209 (233)
T PF05368_consen 165 VVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLAG 209 (233)
T ss_dssp EEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEGG
T ss_pred EEEEccCCCccccccccHHHHHHHHHHHHcChHHhcCCEEEEeCC
Confidence 00000000 0123 388999999999999977665788877654
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-07 Score=81.17 Aligned_cols=233 Identities=19% Similarity=0.186 Sum_probs=149.0
Q ss_pred CccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 80 ~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+...+|-++-|.||+|.+|+-++..|++.| ..|++-.|-.+.--.-.+-+... +++.+...|+.|+++++++++
T Consensus 55 GRsS~sGiVaTVFGAtGFlGryvvnklak~G-SQviiPyR~d~~~~r~lkvmGdL-GQvl~~~fd~~DedSIr~vvk--- 129 (391)
T KOG2865|consen 55 GRSSVSGIVATVFGATGFLGRYVVNKLAKMG-SQVIIPYRGDEYDPRHLKVMGDL-GQVLFMKFDLRDEDSIRAVVK--- 129 (391)
T ss_pred CcccccceEEEEecccccccHHHHHHHhhcC-CeEEEeccCCccchhheeecccc-cceeeeccCCCCHHHHHHHHH---
Confidence 3456788899999999999999999999999 59999888643221111112222 578999999999999999988
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.-++|||..|--.+.+.+ +. -++|+.++-.+.+.+-..-.+ ++|.+|+..+..
T Consensus 130 ----~sNVVINLIGrd~eTknf---~f------~Dvn~~~aerlAricke~GVe------rfIhvS~Lganv-------- 182 (391)
T KOG2865|consen 130 ----HSNVVINLIGRDYETKNF---SF------EDVNVHIAERLARICKEAGVE------RFIHVSCLGANV-------- 182 (391)
T ss_pred ----hCcEEEEeeccccccCCc---cc------ccccchHHHHHHHHHHhhChh------heeehhhccccc--------
Confidence 478999999865443322 33 357888888887776554433 899999876442
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
.+.+.|--||++-+--++. ++ + ..+.|.|..|..+ ..+ ...
T Consensus 183 -----------------------------~s~Sr~LrsK~~gE~aVrd---af---P--eAtIirPa~iyG~-eDr-fln 223 (391)
T KOG2865|consen 183 -----------------------------KSPSRMLRSKAAGEEAVRD---AF---P--EATIIRPADIYGT-EDR-FLN 223 (391)
T ss_pred -----------------------------cChHHHHHhhhhhHHHHHh---hC---C--cceeechhhhccc-chh-HHH
Confidence 4556788888875544332 22 2 3455788877653 111 111
Q ss_pred hhhhhchhhHHHHh--------cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHH
Q 015844 320 LFRLLFPPFQKYIT--------KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEI 391 (399)
Q Consensus 320 ~~~~~~~~~~~~~~--------~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~ 391 (399)
.+..+-+.+...++ +-.+-.-|+|..|+..+.++.. .|..+..-|+. ...-.++.+-.++.
T Consensus 224 ~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s--~Gktye~vGP~---------~yql~eLvd~my~~ 292 (391)
T KOG2865|consen 224 YYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS--MGKTYEFVGPD---------RYQLSELVDIMYDM 292 (391)
T ss_pred HHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccc--cCceeeecCCc---------hhhHHHHHHHHHHH
Confidence 11111111111121 1234567999999999988844 78887776632 22333555555555
Q ss_pred HHH
Q 015844 392 SEK 394 (399)
Q Consensus 392 ~~~ 394 (399)
..+
T Consensus 293 ~~~ 295 (391)
T KOG2865|consen 293 ARE 295 (391)
T ss_pred Hhh
Confidence 544
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=88.92 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=66.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+++|+++|+|+ ||+|++++..|++.|+.+|++++|+. ++++++.+++...+..+.+..+|+++.+++...++
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--- 198 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--- 198 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc---
Confidence 467899999999 69999999999999986799999986 66777777665444455667789988777765544
Q ss_pred HcCCCccEEEecCcc
Q 015844 160 RSGRPLDVLVCNAAV 174 (399)
Q Consensus 160 ~~~g~id~lv~nAg~ 174 (399)
..|+||||--+
T Consensus 199 ----~~DilINaTp~ 209 (289)
T PRK12548 199 ----SSDILVNATLV 209 (289)
T ss_pred ----cCCEEEEeCCC
Confidence 46999998765
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-06 Score=84.38 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=137.3
Q ss_pred cccCCCEEEEEcCC-ChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHh----ccCCCcEEEEEecCCCHHHHHHHH
Q 015844 82 KTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSA----GMAKENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 82 ~~l~~k~~lVTG~s-~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~----~~~~~~~~~~~~Dvs~~~~v~~~~ 155 (399)
-...++++||||++ +.||.+++..|+..|| +||++..+ .++..+..+.+ ...+..+.++.+++++..+|+.++
T Consensus 392 ~~y~d~valVTGA~~gSIaa~Vv~~LL~gGA-tVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlI 470 (866)
T COG4982 392 GTYGDKVALVTGASKGSIAAAVVARLLAGGA-TVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALI 470 (866)
T ss_pred CCcccceEEEecCCCcchHHHHHHHHHhCCc-EEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHH
Confidence 36788999999998 7899999999999998 77776554 33333444443 344667888999999999999999
Q ss_pred HHHHHcCC--------------CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCce
Q 015844 156 DTFRRSGR--------------PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKR 220 (399)
Q Consensus 156 ~~~~~~~g--------------~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~ 220 (399)
+.|-++.. .+|.+|--|.+.-. +.+.+.... -+-.+.+-+.....++-.+.+.-..++- ..-.
T Consensus 471 ewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~-G~l~~agsr-aE~~~rilLw~V~Rliggl~~~~s~r~v~~R~h 548 (866)
T COG4982 471 EWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVS-GELADAGSR-AEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLH 548 (866)
T ss_pred HHhccccccccCCcceecccccCcceeeecccCCcc-CccccCCch-HHHHHHHHHHHHHHHHHHhhhhccccCcccceE
Confidence 98865321 25777777766422 233333221 1122233333333333322222111110 0113
Q ss_pred EEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhh-ccCCceE
Q 015844 221 LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF-HEETGIA 299 (399)
Q Consensus 221 iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~gi~ 299 (399)
+|.-.|... .-+.+-..|+-||++++.+...+..|- +.. -+.
T Consensus 549 VVLPgSPNr------------------------------------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~-~vs 591 (866)
T COG4982 549 VVLPGSPNR------------------------------------GMFGGDGAYGESKLALDAVVNRWHSESSWAA-RVS 591 (866)
T ss_pred EEecCCCCC------------------------------------CccCCCcchhhHHHHHHHHHHHhhccchhhH-HHH
Confidence 333333221 134566789999999999887777663 111 345
Q ss_pred EEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 300 FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 300 v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
+..-.-|+++.+++........ ....+. .-+..+++|.|..++-||+....
T Consensus 592 l~~A~IGWtrGTGLMg~Ndiiv----~aiEk~-GV~tyS~~EmA~~LLgL~saev~ 642 (866)
T COG4982 592 LAHALIGWTRGTGLMGHNDIIV----AAIEKA-GVRTYSTDEMAFNLLGLASAEVV 642 (866)
T ss_pred HhhhheeeeccccccCCcchhH----HHHHHh-CceecCHHHHHHHHHhhccHHHH
Confidence 5555679998877655433321 222222 12345899999999999886544
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=90.08 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=61.9
Q ss_pred cccCCCEEEEEcC----------------CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecC
Q 015844 82 KTLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145 (399)
Q Consensus 82 ~~l~~k~~lVTG~----------------s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv 145 (399)
.+++||++||||| +|++|.++|+.|+++|+ .|++++++.. .+ . . . .+..+|+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~~~~~-~~-----~--~-~--~~~~~dv 251 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVSGPVN-LP-----T--P-A--GVKRIDV 251 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeCCCcc-cc-----C--C-C--CcEEEcc
Confidence 3689999999999 55599999999999997 8999888752 11 0 1 1 1346899
Q ss_pred CCHHHHHHHHHHHHHcCCCccEEEecCccc
Q 015844 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (399)
Q Consensus 146 s~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 175 (399)
++.+++.+.+. +.++++|++|||||+.
T Consensus 252 ~~~~~~~~~v~---~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 252 ESAQEMLDAVL---AALPQADIFIMAAAVA 278 (399)
T ss_pred CCHHHHHHHHH---HhcCCCCEEEEccccc
Confidence 99888877765 4467899999999985
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-06 Score=72.08 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=117.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC--cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++|||++|=.|.+|.+.+.+.|- .+.++.+.. .+|+++.++++.+++.. +
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk---------------------d~DLt~~a~t~~lF~~e-----k 55 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK---------------------DADLTNLADTRALFESE-----K 55 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc---------------------cccccchHHHHHHHhcc-----C
Confidence 5899999999999999999998874 233333221 38999999999999864 6
Q ss_pred ccEEEecCcccCCCCCCC--CCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~--~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+-.|||.|+..+. .+. ....+-|...+++| -++++.+..+-.+ ++|+..|..-+. ...+...
T Consensus 56 PthVIhlAAmVGG--lf~N~~ynldF~r~Nl~in----dNVlhsa~e~gv~------K~vsclStCIfP----dkt~yPI 119 (315)
T KOG1431|consen 56 PTHVIHLAAMVGG--LFHNNTYNLDFIRKNLQIN----DNVLHSAHEHGVK------KVVSCLSTCIFP----DKTSYPI 119 (315)
T ss_pred CceeeehHhhhcc--hhhcCCCchHHHhhcceec----hhHHHHHHHhchh------hhhhhcceeecC----CCCCCCC
Confidence 7788888765432 222 23344454444444 4555555554332 556555543321 1111000
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
... -.....+-+....|+-+|..+.-..+.++.++ |-...++-|-.+..|. .++.+...
T Consensus 120 dEt---------------mvh~gpphpsN~gYsyAKr~idv~n~aY~~qh----g~~~tsviPtNvfGph--DNfnpe~s 178 (315)
T KOG1431|consen 120 DET---------------MVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQH----GRDYTSVIPTNVFGPH--DNFNPENS 178 (315)
T ss_pred CHH---------------HhccCCCCCCchHHHHHHHHHHHHHHHHHHHh----CCceeeeccccccCCC--CCCCcccc
Confidence 000 00112234566679999977676667777775 6677777777776652 11111111
Q ss_pred hhch-------------------hhHHHHhcCCCChHHHHHHHHHhhcC
Q 015844 323 LLFP-------------------PFQKYITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 323 ~~~~-------------------~~~~~~~~~~~~pee~a~~v~~l~~~ 352 (399)
...+ +-...|.+.++-.+|.|+.++|++..
T Consensus 179 HVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~ 227 (315)
T KOG1431|consen 179 HVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLRE 227 (315)
T ss_pred cchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHh
Confidence 1000 00112344456678888888888764
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-05 Score=74.13 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=119.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.+|||||||.+|.++++.|.++| +.|.+..|+.+...... ..+.+...|+.+..++...++ .+|.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~~~~~~~~~-------~~v~~~~~d~~~~~~l~~a~~-------G~~~ 66 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARG-HEVRAAVRNPEAAAALA-------GGVEVVLGDLRDPKSLVAGAK-------GVDG 66 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCC-CEEEEEEeCHHHHHhhc-------CCcEEEEeccCCHhHHHHHhc-------cccE
Confidence 68999999999999999999999 69999999987766543 467888999999999888876 6888
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
+++..+... ... . .............+... . +...++.+|+..+..
T Consensus 67 ~~~i~~~~~-~~~-~---------~~~~~~~~~~~~a~~a~----~---~~~~~~~~s~~~~~~---------------- 112 (275)
T COG0702 67 VLLISGLLD-GSD-A---------FRAVQVTAVVRAAEAAG----A---GVKHGVSLSVLGADA---------------- 112 (275)
T ss_pred EEEEecccc-ccc-c---------hhHHHHHHHHHHHHHhc----C---CceEEEEeccCCCCC----------------
Confidence 888887653 211 0 11122233333333332 1 113677776655431
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEee-CCcccCCCCccccchhhhhhch
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY-PGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~-PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
.....|..+|...+...+ ..|+.-..+. ++++.... ............
T Consensus 113 ---------------------~~~~~~~~~~~~~e~~l~--------~sg~~~t~lr~~~~~~~~~--~~~~~~~~~~~~ 161 (275)
T COG0702 113 ---------------------ASPSALARAKAAVEAALR--------SSGIPYTTLRRAAFYLGAG--AAFIEAAEAAGL 161 (275)
T ss_pred ---------------------CCccHHHHHHHHHHHHHH--------hcCCCeEEEecCeeeeccc--hhHHHHHHhhCC
Confidence 245678888888666543 2366644455 44443221 110100000000
Q ss_pred hhHHHHh--cCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 327 PFQKYIT--KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 327 ~~~~~~~--~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
+....+. -..+..++++..+...+..+. ..|..+...|
T Consensus 162 ~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~--~~~~~~~l~g 201 (275)
T COG0702 162 PVIPRGIGRLSPIAVDDVAEALAAALDAPA--TAGRTYELAG 201 (275)
T ss_pred ceecCCCCceeeeEHHHHHHHHHHHhcCCc--ccCcEEEccC
Confidence 1111111 235688999998888887765 3444444444
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-06 Score=74.46 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=65.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++++++|+||+|++|+.+++.|++.|+ +|++++|+.++++...+.+... .......+|..+.+++.+++.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~------ 96 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIK------ 96 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHh------
Confidence 56789999999999999999999999995 9999999988888777766422 123455678888888776664
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
..|+||++...
T Consensus 97 -~~diVi~at~~ 107 (194)
T cd01078 97 -GADVVFAAGAA 107 (194)
T ss_pred -cCCEEEECCCC
Confidence 58888886543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-05 Score=75.33 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=82.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHH-HHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV-RQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v-~~~~~~~~~~ 161 (399)
..+..+|+|+||+|++|+-+++.|.++| ..|..+.|+..+.+.... +.........+..|.....++ ..+++.+.
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~a~~~~~-~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~-- 151 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQKAEDLLG-VFFVDLGLQNVEADVVTAIDILKKLVEAVP-- 151 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChhhhhhhhc-ccccccccceeeeccccccchhhhhhhhcc--
Confidence 3456799999999999999999999999 699999999887777655 111112233344444444333 23332211
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~ 230 (399)
-...+++-++|.-... + +...-..+...|..++++++..... .++|++||+.+.
T Consensus 152 -~~~~~v~~~~ggrp~~----e----d~~~p~~VD~~g~knlvdA~~~aGv------k~~vlv~si~~~ 205 (411)
T KOG1203|consen 152 -KGVVIVIKGAGGRPEE----E----DIVTPEKVDYEGTKNLVDACKKAGV------KRVVLVGSIGGT 205 (411)
T ss_pred -ccceeEEecccCCCCc----c----cCCCcceecHHHHHHHHHHHHHhCC------ceEEEEEeecCc
Confidence 1355677777653211 1 2233345667788888888854433 389999887765
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-05 Score=78.25 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=89.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecCh---HHHHHH--------HHHhccC----CCcEEEEEecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDF---LKAERA--------AKSAGMA----KENYTIMHLDL 145 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~---~~~~~~--------~~~~~~~----~~~~~~~~~Dv 145 (399)
.+++|+++||||+|.+|+.+...|++. ...++++.-|.. +..+.+ .+.+.+. -.++..+.+|+
T Consensus 9 f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi 88 (467)
T KOG1221|consen 9 FYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI 88 (467)
T ss_pred HhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence 689999999999999999999999874 345788887753 111111 1222221 24678888998
Q ss_pred CCHHHHHH--HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEE
Q 015844 146 ASLDSVRQ--FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLII 223 (399)
Q Consensus 146 s~~~~v~~--~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~ 223 (399)
++++---. -.+.+. ..+|+|||+|+.... .|-++..+.+|..|+.++.+.+.....- -.+|.
T Consensus 89 ~~~~LGis~~D~~~l~---~eV~ivih~AAtvrF--------de~l~~al~iNt~Gt~~~l~lak~~~~l-----~~~vh 152 (467)
T KOG1221|consen 89 SEPDLGISESDLRTLA---DEVNIVIHSAATVRF--------DEPLDVALGINTRGTRNVLQLAKEMVKL-----KALVH 152 (467)
T ss_pred cCcccCCChHHHHHHH---hcCCEEEEeeeeecc--------chhhhhhhhhhhHhHHHHHHHHHHhhhh-----heEEE
Confidence 87542111 111111 269999999997632 2446778999999999999988765433 27899
Q ss_pred Eeccccc
Q 015844 224 VGSITGN 230 (399)
Q Consensus 224 vSS~~~~ 230 (399)
+|..-..
T Consensus 153 VSTAy~n 159 (467)
T KOG1221|consen 153 VSTAYSN 159 (467)
T ss_pred eehhhee
Confidence 9886554
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.3e-06 Score=71.22 Aligned_cols=173 Identities=24% Similarity=0.257 Sum_probs=112.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHH-cCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
....+||||+-|-+|..+|..|-. .|-..|++.+--.....-. ..| -++-.|+-|...+++++-. .
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~-----~~G---PyIy~DILD~K~L~eIVVn-----~ 109 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVT-----DVG---PYIYLDILDQKSLEEIVVN-----K 109 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhc-----ccC---CchhhhhhccccHHHhhcc-----c
Confidence 345899999999999999998864 5766777766543221111 112 2556799998888776543 4
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+||-+||-.+.... ..+...--..++|+.|..++++.+..+- --||+-|.-|.+|. ..|..+.
T Consensus 110 RIdWL~HfSALLSA------vGE~NVpLA~~VNI~GvHNil~vAa~~k--------L~iFVPSTIGAFGP---tSPRNPT 172 (366)
T KOG2774|consen 110 RIDWLVHFSALLSA------VGETNVPLALQVNIRGVHNILQVAAKHK--------LKVFVPSTIGAFGP---TSPRNPT 172 (366)
T ss_pred ccceeeeHHHHHHH------hcccCCceeeeecchhhhHHHHHHHHcC--------eeEeecccccccCC---CCCCCCC
Confidence 89999998766422 1233344567899999999999887652 33566555544432 2221111
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEe-eCCcccC
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASL-YPGCIAT 310 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v-~PG~v~T 310 (399)
- +..-..+...|+.||.-.+.+.+.+..++ |+.+-|+ .||.+..
T Consensus 173 P-------------------dltIQRPRTIYGVSKVHAEL~GEy~~hrF----g~dfr~~rfPg~is~ 217 (366)
T KOG2774|consen 173 P-------------------DLTIQRPRTIYGVSKVHAELLGEYFNHRF----GVDFRSMRFPGIISA 217 (366)
T ss_pred C-------------------CeeeecCceeechhHHHHHHHHHHHHhhc----CccceecccCccccc
Confidence 1 11123466789999998888888888776 6666666 3666643
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=82.37 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=71.8
Q ss_pred ccCCCEEEEEcC---------------CCh-HHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC
Q 015844 83 TLRKGSVIITGA---------------SSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (399)
Q Consensus 83 ~l~~k~~lVTG~---------------s~g-IG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs 146 (399)
+++||++||||| |+| +|.++|+.|..+|+ +|+++.+..... ... ....+|++
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga-~V~~~~g~~~~~---------~~~--~~~~~~v~ 249 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGA-DVTLITGPVSLL---------TPP--GVKSIKVS 249 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCC-EEEEeCCCCccC---------CCC--CcEEEEec
Confidence 588999999999 566 99999999999997 888877654211 111 12568999
Q ss_pred CHHHH-HHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhh---hHhhhchhhHHHHHHHHHH
Q 015844 147 SLDSV-RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF---ELSVGTNHLGHFLLSRLLL 208 (399)
Q Consensus 147 ~~~~v-~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~---~~~~~~N~~g~~~l~~~~~ 208 (399)
+.+++ +.+++++ ++.+|++|+|||+... .+... ....+ ...+.+|+.-.--+++.+.
T Consensus 250 ~~~~~~~~~~~~~---~~~~D~~i~~Aavsd~-~~~~~-~~~Ki~~~~~~~~l~L~~~pdil~~l~ 310 (390)
T TIGR00521 250 TAEEMLEAALNEL---AKDFDIFISAAAVADF-KPKTV-FEGKIKKQGEELSLKLVKNPDIIAEVR 310 (390)
T ss_pred cHHHHHHHHHHhh---cccCCEEEEccccccc-ccccc-ccccccccCCceeEEEEeCcHHHHHHH
Confidence 99888 5555443 4679999999999633 22211 11111 1234566655555555443
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.9e-06 Score=74.99 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=63.9
Q ss_pred EEEEEcCCCh-HHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~g-IG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+-.||+.++| ||.++|+.|+++|+ .|++++|+.... ......+.++.++ +.+ ++.+.+.+.++.+|
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G~-~V~li~r~~~~~-------~~~~~~v~~i~v~--s~~---~m~~~l~~~~~~~D 83 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAGH-EVTLVTTKTAVK-------PEPHPNLSIIEIE--NVD---DLLETLEPLVKDHD 83 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCCC-EEEEEECccccc-------CCCCCCeEEEEEe--cHH---HHHHHHHHHhcCCC
Confidence 5568876655 99999999999995 999888763210 0011245555542 222 22333333345799
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHH
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~ 200 (399)
+||||||+.. ..+....+.++|..++++|....
T Consensus 84 ivIh~AAvsd-~~~~~~~~~~~~~~~~~v~~~~~ 116 (229)
T PRK06732 84 VLIHSMAVSD-YTPVYMTDLEEVSASDNLNEFLT 116 (229)
T ss_pred EEEeCCccCC-ceehhhhhhhhhhhhhhhhhhhc
Confidence 9999999863 34455567888889888875443
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=75.65 Aligned_cols=121 Identities=14% Similarity=-0.015 Sum_probs=76.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.++++|||++|.||..++..|+..+ ++.+++++++....+ ...+...... ....+.+|..++.+.++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~--a~Dl~~~~~~--~~v~~~td~~~~~~~l~------ 75 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV--AADLSHIDTP--AKVTGYADGELWEKALR------ 75 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc--ccchhhcCcC--ceEEEecCCCchHHHhC------
Confidence 456689999999999999999998655 358999998432211 1122211122 23345555444333332
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
..|+||+++|.... ..+.+...+..|+...-.+.+.+.++ + ..++|+++|.-
T Consensus 76 -gaDvVVitaG~~~~-------~~~tR~dll~~N~~i~~~i~~~i~~~----~--~~~iviv~SNP 127 (321)
T PTZ00325 76 -GADLVLICAGVPRK-------PGMTRDDLFNTNAPIVRDLVAAVASS----A--PKAIVGIVSNP 127 (321)
T ss_pred -CCCEEEECCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH----C--CCeEEEEecCc
Confidence 69999999997421 12346677888887776666665544 2 13777777753
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.2e-06 Score=71.78 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH--HHHHHh----ccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE--RAAKSA----GMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~--~~~~~~----~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
..|++||||=+|-=|..+|..|+..| +.|..+-|...... .+.... ...+......-.|++|...+.+++..+
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 34699999999999999999999999 69988766432211 111111 123556777789999999999999877
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+++-+.|.|+..+.. .+.+-.+.+-++...|++.|+.++..+-...+ -++-.-|+ +-..|.
T Consensus 106 -----kPtEiYnLaAQSHVk-----vSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~---VrfYQAst-SElyGk----- 166 (376)
T KOG1372|consen 106 -----KPTEVYNLAAQSHVK-----VSFDLPEYTAEVDAVGTLRLLDAIRACRLTEK---VRFYQAST-SELYGK----- 166 (376)
T ss_pred -----CchhhhhhhhhcceE-----EEeecccceeeccchhhhhHHHHHHhcCcccc---eeEEeccc-Hhhccc-----
Confidence 577788888765432 23333344556788899999988876644432 34444333 333221
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhh--ccCCceEEEEeeCC
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF--HEETGIAFASLYPG 306 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~--~~~~gi~v~~v~PG 306 (399)
....|..+..|+-+.++|+++|.+--.++-.+...+ -+..||-+|.=+|-
T Consensus 167 ------------------v~e~PQsE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPR 218 (376)
T KOG1372|consen 167 ------------------VQEIPQSETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPR 218 (376)
T ss_pred ------------------ccCCCcccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCc
Confidence 122334455688889999999987433332222222 14567888776663
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-05 Score=74.66 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=66.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+.+||.|+ |+||+.+|..|+++|...|++.+|+.++..++..... .++.++++|+.|.+.+.+++++ .|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---~~v~~~~vD~~d~~al~~li~~-------~d 70 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---GKVEALQVDAADVDALVALIKD-------FD 70 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---ccceeEEecccChHHHHHHHhc-------CC
Confidence 46889998 9999999999999996699999999888877765542 3789999999999999888873 49
Q ss_pred EEEecCccc
Q 015844 167 VLVCNAAVY 175 (399)
Q Consensus 167 ~lv~nAg~~ 175 (399)
+|||++...
T Consensus 71 ~VIn~~p~~ 79 (389)
T COG1748 71 LVINAAPPF 79 (389)
T ss_pred EEEEeCCch
Confidence 999998754
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-05 Score=76.70 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=61.0
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCc-EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 89 VIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
|+|.|+ |.+|+.+++.|++++-. +|++.+|+.++++++.+++ .+.++.++++|+.|.+++.++++ ..|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~-------~~dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELLR-------GCDV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHHT-------TSSE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHHh-------cCCE
Confidence 689999 99999999999999844 8999999999888877654 35689999999999999888876 4699
Q ss_pred EEecCccc
Q 015844 168 LVCNAAVY 175 (399)
Q Consensus 168 lv~nAg~~ 175 (399)
|||++|..
T Consensus 71 Vin~~gp~ 78 (386)
T PF03435_consen 71 VINCAGPF 78 (386)
T ss_dssp EEE-SSGG
T ss_pred EEECCccc
Confidence 99999875
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.9e-05 Score=62.65 Aligned_cols=78 Identities=27% Similarity=0.331 Sum_probs=60.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++++++|.|+ ||.|++++..|++.|+.+|.++.|+.++++++.+.+. +..+.++. +.+.. +.+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--~~~~~~~~--~~~~~---~~~~------ 74 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--GVNIEAIP--LEDLE---EALQ------ 74 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--GCSEEEEE--GGGHC---HHHH------
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--ccccceee--HHHHH---HHHh------
Confidence 678999999997 8999999999999999889999999999999888872 22344443 33322 2222
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
..|+||++.+..
T Consensus 75 -~~DivI~aT~~~ 86 (135)
T PF01488_consen 75 -EADIVINATPSG 86 (135)
T ss_dssp -TESEEEE-SSTT
T ss_pred -hCCeEEEecCCC
Confidence 699999998864
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.6e-05 Score=72.75 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=94.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++|||++|.+|..++..|+..+ +..+++++.++. +.....+....... ...|+++.+++.+.+ ..
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l-------~~ 86 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGVAADVSHINTPA--QVRGFLGDDQLGDAL-------KG 86 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--CeeEchhhhCCcCc--eEEEEeCCCCHHHHc-------CC
Confidence 3589999999999999999999766 357999998762 11111222111111 223433333333333 36
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
.|+||+.||.... +...+...+..|+.....+.+.+.++-. + .||+++|.-.....
T Consensus 87 aDiVVitAG~~~~-------~g~~R~dll~~N~~i~~~i~~~i~~~~p-----~-aivivvSNPvD~~~----------- 142 (323)
T PLN00106 87 ADLVIIPAGVPRK-------PGMTRDDLFNINAGIVKTLCEAVAKHCP-----N-ALVNIISNPVNSTV----------- 142 (323)
T ss_pred CCEEEEeCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHCC-----C-eEEEEeCCCccccH-----------
Confidence 9999999998522 1234677788888876666666554432 2 45555553221000
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 292 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~ 292 (399)
.-+. .......++++...|+.++.-...|-..++.++
T Consensus 143 ~i~t-----------~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~l 179 (323)
T PLN00106 143 PIAA-----------EVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKK 179 (323)
T ss_pred HHHH-----------HHHHHcCCCCcceEEEEecchHHHHHHHHHHHh
Confidence 0000 000011345667788888876667878888887
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.3e-05 Score=71.24 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=55.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|+++||||+|.||..+|++|+++ |+..++++.|+..++..+.+++. ..|+. ++.+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~---------~~~i~---~l~~~------- 212 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG---------GGKIL---SLEEA------- 212 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc---------cccHH---hHHHH-------
Confidence 588999999999999999999999864 66799999999887777665542 12222 22222
Q ss_pred CCCccEEEecCccc
Q 015844 162 GRPLDVLVCNAAVY 175 (399)
Q Consensus 162 ~g~id~lv~nAg~~ 175 (399)
....|+||++++..
T Consensus 213 l~~aDiVv~~ts~~ 226 (340)
T PRK14982 213 LPEADIVVWVASMP 226 (340)
T ss_pred HccCCEEEECCcCC
Confidence 23699999999874
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=56.32 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=117.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.+.|.||||-.|..|++...++| +.|..+.|+..+.... ..+.+++.|+.|++++.+.+. ..|+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~K~~~~--------~~~~i~q~Difd~~~~a~~l~-------g~Da 65 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRG-HEVTAIVRNASKLAAR--------QGVTILQKDIFDLTSLASDLA-------GHDA 65 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCC-CeeEEEEeChHhcccc--------ccceeecccccChhhhHhhhc-------CCce
Confidence 47788999999999999999999 7999999998775432 245688999999998866654 7999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||..-|...+. ..+... .-.+.++..++... ..|++.++...+..-. +...+
T Consensus 66 VIsA~~~~~~~------~~~~~~-----------k~~~~li~~l~~ag--v~RllVVGGAGSL~id------~g~rL--- 117 (211)
T COG2910 66 VISAFGAGASD------NDELHS-----------KSIEALIEALKGAG--VPRLLVVGGAGSLEID------EGTRL--- 117 (211)
T ss_pred EEEeccCCCCC------hhHHHH-----------HHHHHHHHHHhhcC--CeeEEEEcCccceEEc------CCcee---
Confidence 99988765221 111111 11455555555544 3588888765544210 00000
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
.+...+| ..-|..+++.-+ +.+.|..+ .++..+-|+|..+-.|+-.......... ..
T Consensus 118 ---------------vD~p~fP-~ey~~~A~~~ae-~L~~Lr~~----~~l~WTfvSPaa~f~PGerTg~yrlggD--~l 174 (211)
T COG2910 118 ---------------VDTPDFP-AEYKPEALAQAE-FLDSLRAE----KSLDWTFVSPAAFFEPGERTGNYRLGGD--QL 174 (211)
T ss_pred ---------------ecCCCCc-hhHHHHHHHHHH-HHHHHhhc----cCcceEEeCcHHhcCCccccCceEeccc--eE
Confidence 1111222 222333443322 23444443 3588888999887766322211111100 00
Q ss_pred hHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 328 FQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 328 ~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
.........++-+|.|-+++.-+..+.
T Consensus 175 l~n~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 175 LVNAKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred EEcCCCceeeeHHHHHHHHHHHHhccc
Confidence 111111235789999999988776654
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.2e-05 Score=68.78 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=49.9
Q ss_pred cCCCEEEEEcCC----------------ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC
Q 015844 84 LRKGSVIITGAS----------------SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147 (399)
Q Consensus 84 l~~k~~lVTG~s----------------~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~ 147 (399)
|+||++|||+|. |.||.++|+.|+++|+ .|+++++....... ... .+..+..+..|...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga-~V~li~g~~~~~~~---~~~-~~~~~~~V~s~~d~ 75 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA-HVIYLHGYFAEKPN---DIN-NQLELHPFEGIIDL 75 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC-eEEEEeCCCcCCCc---ccC-CceeEEEEecHHHH
Confidence 468999999885 9999999999999996 88877653211000 000 01223333332222
Q ss_pred HHHHHHHHHHHHHcCCCccEEEecCccc
Q 015844 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (399)
Q Consensus 148 ~~~v~~~~~~~~~~~g~id~lv~nAg~~ 175 (399)
.+. +.++.+. .++|+|||+|++.
T Consensus 76 ~~~----l~~~~~~-~~~D~VIH~AAvs 98 (229)
T PRK09620 76 QDK----MKSIITH-EKVDAVIMAAAGS 98 (229)
T ss_pred HHH----HHHHhcc-cCCCEEEECcccc
Confidence 223 3333221 2589999999985
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=73.58 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=57.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|+++|+|+++ +|.++|+.|++.|+ .|++++++. +..++..+++...+ +.++.+|..+. .
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~------------~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELG--IELVLGEYPEE------------F 65 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CEEEeCCcchh------------H
Confidence 56789999999877 99999999999995 999999875 34444444454333 45677787761 1
Q ss_pred CCCccEEEecCccc
Q 015844 162 GRPLDVLVCNAAVY 175 (399)
Q Consensus 162 ~g~id~lv~nAg~~ 175 (399)
.+.+|+||+++|+.
T Consensus 66 ~~~~d~vv~~~g~~ 79 (450)
T PRK14106 66 LEGVDLVVVSPGVP 79 (450)
T ss_pred hhcCCEEEECCCCC
Confidence 24699999999974
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00015 Score=67.43 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=68.4
Q ss_pred EEEEEcCCChHHHHHHHHHHH----cCCcEEEEeecChHHHHHHHHHhccCC----CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAE----TGKWHIIMACRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~----~Ga~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
-++|-||||.-|.-+++.+.+ .| ..+-+.+||++++++..+.+.... .+..++.||.+|++++.+++.
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak--- 82 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK--- 82 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh---
Confidence 378999999999999999998 78 589999999999999988875543 233488899999999999987
Q ss_pred HcCCCccEEEecCccc
Q 015844 160 RSGRPLDVLVCNAAVY 175 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~ 175 (399)
+..+||||+|..
T Consensus 83 ----~~~vivN~vGPy 94 (423)
T KOG2733|consen 83 ----QARVIVNCVGPY 94 (423)
T ss_pred ----hhEEEEeccccc
Confidence 467999999976
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0004 Score=58.31 Aligned_cols=158 Identities=19% Similarity=0.174 Sum_probs=96.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..|+++.++|.||+|-.|..+.+++++.+ ..+|+++.|.+..-.+ .+..+.....|.+..++....+
T Consensus 14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a-------t~k~v~q~~vDf~Kl~~~a~~~----- 81 (238)
T KOG4039|consen 14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA-------TDKVVAQVEVDFSKLSQLATNE----- 81 (238)
T ss_pred HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc-------ccceeeeEEechHHHHHHHhhh-----
Confidence 46788999999999999999999999987 3478888887421111 1234555667776655443333
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
..+|+++++-|...... ..+.+ +.+..--.+.+.+++- +.+ ...|+.+||..+..
T Consensus 82 --qg~dV~FcaLgTTRgka-----Gadgf---ykvDhDyvl~~A~~AK----e~G--ck~fvLvSS~GAd~--------- 136 (238)
T KOG4039|consen 82 --QGPDVLFCALGTTRGKA-----GADGF---YKVDHDYVLQLAQAAK----EKG--CKTFVLVSSAGADP--------- 136 (238)
T ss_pred --cCCceEEEeeccccccc-----ccCce---EeechHHHHHHHHHHH----hCC--CeEEEEEeccCCCc---------
Confidence 37999999988763221 12222 2233322333333332 222 34899999976652
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
.....|-..|.-++.=+..|- + =++..+.||++..+
T Consensus 137 ----------------------------sSrFlY~k~KGEvE~~v~eL~--F-----~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 137 ----------------------------SSRFLYMKMKGEVERDVIELD--F-----KHIIILRPGPLLGE 172 (238)
T ss_pred ----------------------------ccceeeeeccchhhhhhhhcc--c-----cEEEEecCcceecc
Confidence 233456667766554332221 1 26777899999754
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=66.29 Aligned_cols=119 Identities=11% Similarity=0.042 Sum_probs=67.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC------cEEEEeecChHH--HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGK------WHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga------~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+++|||++|.+|..++..|+..+. ..|++++++... ++.....+.. .. .....|+....+..+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d--~~-~~~~~~~~~~~~~~~------ 74 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD--CA-FPLLKSVVATTDPEE------ 74 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh--cc-ccccCCceecCCHHH------
Confidence 589999999999999999998552 379999986421 2111101100 00 011113322222222
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
.+...|+|||.||..... ..+. .+.++.|+. +++.+.+.+.+...+++.+|++|..
T Consensus 75 -~l~~aDiVI~tAG~~~~~----~~~R---~~l~~~N~~----i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 75 -AFKDVDVAILVGAMPRKE----GMER---KDLLKANVK----IFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred -HhCCCCEEEEeCCcCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCeEEEEecCc
Confidence 223699999999985321 2232 445666654 4555555665553235677777753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00083 Score=56.51 Aligned_cols=76 Identities=29% Similarity=0.355 Sum_probs=55.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+++++++|+|+ |++|.++++.|.+.|...|++++|+.+..++..+.+.... +..+.++.++. ..
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------~~ 80 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-----IAIAYLDLEEL----------LA 80 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-----cceeecchhhc----------cc
Confidence 45678999998 8999999999999864589999999888777766653211 22344443322 24
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
..|+||++....
T Consensus 81 ~~Dvvi~~~~~~ 92 (155)
T cd01065 81 EADLIINTTPVG 92 (155)
T ss_pred cCCEEEeCcCCC
Confidence 699999998764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=61.82 Aligned_cols=77 Identities=25% Similarity=0.308 Sum_probs=55.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+++++|+|+ ||+|++++..|+..|+.+|++++|+.++++++.+.+.... .+ ..++ +. .+..
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~-~~---~~~~----~~-------~~~~ 183 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG-KA---ELDL----EL-------QEEL 183 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc-ce---eecc----cc-------hhcc
Confidence 567899999997 8999999999999996699999999988888877664221 11 1111 01 1112
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+|||+....
T Consensus 184 ~~~DivInaTp~g 196 (278)
T PRK00258 184 ADFDLIINATSAG 196 (278)
T ss_pred ccCCEEEECCcCC
Confidence 4689999987653
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0049 Score=57.97 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++++|+|+++++|.++++.+...|+ .|++++++.++.+.+. .+ +.+ ..+|..+.+..+.+.+.. . ...
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~-~~---g~~---~~~~~~~~~~~~~~~~~~-~-~~~ 213 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVR-QA---GAD---AVFNYRAEDLADRILAAT-A-GQG 213 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-Hc---CCC---EEEeCCCcCHHHHHHHHc-C-CCc
Confidence 578999999999999999999999996 8999999876655542 22 222 124555555444443322 1 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.+++++|.
T Consensus 214 ~d~vi~~~~~ 223 (325)
T cd08253 214 VDVIIEVLAN 223 (325)
T ss_pred eEEEEECCch
Confidence 9999999874
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=59.80 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=54.9
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.++|+++|+|+ ||+|++++..|++.|+ .|++++|+.++.+++.+.+...+ .+.....| +. ...
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~-~~~~~~~~-----~~---------~~~ 177 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYG-EIQAFSMD-----EL---------PLH 177 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcC-ceEEechh-----hh---------ccc
Confidence 45789999998 6999999999999995 99999999888888777764332 12222111 10 123
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
..|+|||+.+..
T Consensus 178 ~~DivInatp~g 189 (270)
T TIGR00507 178 RVDLIINATSAG 189 (270)
T ss_pred CccEEEECCCCC
Confidence 689999999874
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0078 Score=57.10 Aligned_cols=81 Identities=27% Similarity=0.319 Sum_probs=58.0
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..+++++|+|++++||.++++.+...|+ +|+++.++.++.+.+ ..+ +.. ...|..+.+..+.+.+.... +
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~---~~~---~~~~~~~~~~~~~~~~~~~~--~ 234 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERA-KEL---GAD---YVIDYRKEDFVREVRELTGK--R 234 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCC---eEEecCChHHHHHHHHHhCC--C
Confidence 3578999999999999999999999996 889998887665544 222 222 22466666666655543322 3
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++++++|.
T Consensus 235 ~~d~~i~~~g~ 245 (342)
T cd08266 235 GVDVVVEHVGA 245 (342)
T ss_pred CCcEEEECCcH
Confidence 69999999873
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=59.10 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=69.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc------EEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHH--H--HHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKW------HIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSV--R--QFV 155 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v--~--~~~ 155 (399)
++.|||++|.+|..++..|+..|.. .++++++++ +. ......|+.|.... . .+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~--------------~~g~~~Dl~d~~~~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKA--------------LEGVVMELQDCAFPLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCc--------------cceeeeehhhhcccccCCcEEe
Confidence 5889999999999999999987632 489998875 22 22334455544200 0 000
Q ss_pred HHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 156 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
....+.+...|+||+.||.... + ..+. .+.+..|. .+++.+.+.+.+...+++.+|++|-
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~--~--g~tR---~dll~~N~----~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRK--P--GMER---ADLLRKNA----KIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCC--c--CCcH---HHHHHHhH----HHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 1122333479999999998422 1 2233 33455554 4666777777666323577777753
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=59.56 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=70.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc------EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHH--HHH--HH
Q 015844 88 SVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVR--QFV--DT 157 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~------~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~--~~~--~~ 157 (399)
++.|+|++|.+|..++..|+..|.. .++++++++... .......|+.|..... ... ..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~------------~a~g~~~Dl~d~~~~~~~~~~~~~~ 68 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK------------VLEGVVMELMDCAFPLLDGVVPTHD 68 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc------------ccceeEeehhcccchhcCceeccCC
Confidence 3789999999999999999986642 488998864320 1223445665554111 000 01
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
..+.+...|+||+.||.... ..+.+.+.+..|+. +++.+.+.+.+...+++.||++|-.
T Consensus 69 ~~~~~~~aDiVVitAG~~~~-------~~~tr~~ll~~N~~----i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 69 PAVAFTDVDVAILVGAFPRK-------EGMERRDLLSKNVK----IFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred hHHHhCCCCEEEEcCCCCCC-------CCCcHHHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 12334579999999997422 12335666666654 5566666666552235677777643
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0008 Score=67.14 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=51.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.+|+++|||+++ +|.++|+.|++.|+ .|++.+++........+.+...+.+ +...+ +...+ ..
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~--~~~~~--~~~~~---~~------ 66 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIK--VICGS--HPLEL---LD------ 66 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCE--EEeCC--CCHHH---hc------
Confidence 46789999999975 99999999999996 8999887654333333334333332 22211 11111 11
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
..+|.||+++|+.
T Consensus 67 ~~~d~vV~s~gi~ 79 (447)
T PRK02472 67 EDFDLMVKNPGIP 79 (447)
T ss_pred CcCCEEEECCCCC
Confidence 1489999999985
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=55.90 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=46.4
Q ss_pred cCCCEEEEEcC----------------CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC
Q 015844 84 LRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147 (399)
Q Consensus 84 l~~k~~lVTG~----------------s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~ 147 (399)
|+||++|||+| ||-.|.++|+.+..+|| .|+++..... ... ...+.. .++.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga-~V~li~g~~~-~~~--------p~~~~~--i~v~s 68 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA-EVTLIHGPSS-LPP--------PPGVKV--IRVES 68 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEEEE-TTS-------------TTEEE--EE-SS
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC-EEEEEecCcc-ccc--------cccceE--EEecc
Confidence 46778888876 78899999999999997 7887776531 110 123433 45666
Q ss_pred HHHHHHHHHHHHHcCCCccEEEecCccc
Q 015844 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (399)
Q Consensus 148 ~~~v~~~~~~~~~~~g~id~lv~nAg~~ 175 (399)
.+++.+.+.+. +..-|++|++|++.
T Consensus 69 a~em~~~~~~~---~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 69 AEEMLEAVKEL---LPSADIIIMAAAVS 93 (185)
T ss_dssp HHHHHHHHHHH---GGGGSEEEE-SB--
T ss_pred hhhhhhhhccc---cCcceeEEEecchh
Confidence 66665555544 34569999999986
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=65.24 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=41.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
.+++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+.+.+.+
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGA-RVVIANRTYERAKELADAV 422 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh
Confidence 467899999999 6999999999999997 9999999988888777665
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=61.53 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=57.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.+++++|.|+ ||+|+.+++.|+..|+..++++.|+.++++.+.+++.. . .. ...++.... .
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~--~--~~-----~~~~~l~~~-------l 240 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN--A--SA-----HYLSELPQL-------I 240 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC--C--eE-----ecHHHHHHH-------h
Confidence 578999999998 99999999999999987899999998888887776531 1 11 112232222 2
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+||++.+..
T Consensus 241 ~~aDiVI~aT~a~ 253 (414)
T PRK13940 241 KKADIIIAAVNVL 253 (414)
T ss_pred ccCCEEEECcCCC
Confidence 3699999999864
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0047 Score=57.59 Aligned_cols=50 Identities=26% Similarity=0.210 Sum_probs=43.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM 133 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~ 133 (399)
.+.+++++|.|+ ||.|++++..|++.|+.+|++++|+.++.+.+.+.+..
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~ 173 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNA 173 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence 456789999997 78999999999999987899999999998888877743
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0043 Score=57.80 Aligned_cols=80 Identities=23% Similarity=0.123 Sum_probs=56.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++++++|.|+ ||.|++++..|++.|+.+|.++.|+.++.+++++.+... ..+. .+...+++. +..
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~-~~~~----~~~~~~~~~-------~~~ 188 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV-GVIT----RLEGDSGGL-------AIE 188 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc-Ccce----eccchhhhh-------hcc
Confidence 357889999976 899999999999999888999999999888887766322 1111 111112211 112
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+|||+..+.
T Consensus 189 ~~~DiVInaTp~g 201 (282)
T TIGR01809 189 KAAEVLVSTVPAD 201 (282)
T ss_pred cCCCEEEECCCCC
Confidence 3689999987663
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0067 Score=56.48 Aligned_cols=49 Identities=31% Similarity=0.316 Sum_probs=43.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~ 132 (399)
..++|+++|.|+ ||-+++++..|++.|+.+|+++.|+.++.+.+.+.+.
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~ 172 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVIN 172 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 356789999997 8999999999999998899999999998888877764
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=55.52 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=92.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-c-----EEEEeecChHH--HHHHHHHhccCC----CcEEEEEecCCCHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-W-----HIIMACRDFLK--AERAAKSAGMAK----ENYTIMHLDLASLDSVRQF 154 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~-----~vv~~~r~~~~--~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~ 154 (399)
+++.|+|++|.+|..+|..|+..|. . .+++++.++.. ++..+..+.... .++.+ .-.+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i---~~~~~------ 73 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI---TDDPN------ 73 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE---ecCcH------
Confidence 3789999999999999999998873 4 69999985422 332222222111 11111 11111
Q ss_pred HHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 155 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
+.+..-|++|.+||.... + ..+.. +.+..|+ -+++.+.+.+.+...+.+.+|++|-..-.+...
T Consensus 74 -----~~~~daDivvitaG~~~k--~--g~tR~---dll~~N~----~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~ 137 (322)
T cd01338 74 -----VAFKDADWALLVGAKPRG--P--GMERA---DLLKANG----KIFTAQGKALNDVASRDVKVLVVGNPCNTNALI 137 (322)
T ss_pred -----HHhCCCCEEEEeCCCCCC--C--CCcHH---HHHHHHH----HHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH
Confidence 112369999999998422 1 23333 3455554 456666666666543357777776432111000
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCC-CCChhhhHHHhHHHHHHHHHHHHHhhc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFH 293 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~la~~~~ 293 (399)
..... .++....|+.++.--..|...+++.+.
T Consensus 138 ---------------------------~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lg 170 (322)
T cd01338 138 ---------------------------AMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAG 170 (322)
T ss_pred ---------------------------HHHHcCCCChHheEEehHHHHHHHHHHHHHHhC
Confidence 00112 367788999999998889888998873
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0041 Score=57.57 Aligned_cols=79 Identities=30% Similarity=0.306 Sum_probs=58.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+..+++++|.|+ ||-+++++..|++.|+.+|+++.|+.++++++.+.+...+..+. ..+..+.+..+
T Consensus 123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~--~~~~~~~~~~~---------- 189 (283)
T COG0169 123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVE--AAALADLEGLE---------- 189 (283)
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccc--ccccccccccc----------
Confidence 456899999986 79999999999999987999999999999999888765443211 12222222211
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
..|+|||+-.+.
T Consensus 190 -~~dliINaTp~G 201 (283)
T COG0169 190 -EADLLINATPVG 201 (283)
T ss_pred -ccCEEEECCCCC
Confidence 489999987663
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.025 Score=46.85 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=70.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.|+|++|.+|..+|..|...+ +..+++++++++.++..+.++... ........ .+.+. .
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~-----------~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEA-----------L 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGG-----------G
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccccc-----------c
Confidence 57899999999999999999887 367999999987766655554321 12222222 22222 2
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
...|++|..||..... ..+ -.+.+..|.. +.+.+.+.+.+.. +.+.++.+|-
T Consensus 68 ~~aDivvitag~~~~~----g~s---R~~ll~~N~~----i~~~~~~~i~~~~-p~~~vivvtN 119 (141)
T PF00056_consen 68 KDADIVVITAGVPRKP----GMS---RLDLLEANAK----IVKEIAKKIAKYA-PDAIVIVVTN 119 (141)
T ss_dssp TTESEEEETTSTSSST----TSS---HHHHHHHHHH----HHHHHHHHHHHHS-TTSEEEE-SS
T ss_pred ccccEEEEeccccccc----ccc---HHHHHHHhHh----HHHHHHHHHHHhC-CccEEEEeCC
Confidence 3699999999975221 223 3344556654 4455555555544 3567777753
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0024 Score=56.36 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=40.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
+++||+++|+|.+ .+|..+|+.|.+.|+ +|++.+++.+..+...+.+
T Consensus 25 ~l~gk~v~I~G~G-~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~ 71 (200)
T cd01075 25 SLEGKTVAVQGLG-KVGYKLAEHLLEEGA-KLIVADINEEAVARAAELF 71 (200)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHc
Confidence 6789999999985 899999999999996 9999999987776665543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.007 Score=57.23 Aligned_cols=105 Identities=15% Similarity=-0.018 Sum_probs=56.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHH-cC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAE-TG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~-~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+.++|.||+|+||.+++..|.. .+ ++.+++++|++. .+...-.+........+..++-.+ +.+. ...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d---~~~~-------l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGED---PTPA-------LEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCC---HHHH-------cCC
Confidence 3689999999999999998855 22 257888888743 211111121111111111112122 1111 135
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHH
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 209 (399)
.|+||.++|..... ..+ -...+..|....-.+.+.+.+
T Consensus 70 ~DiVIitaG~~~~~----~~~---R~dll~~N~~i~~~ii~~i~~ 107 (312)
T PRK05086 70 ADVVLISAGVARKP----GMD---RSDLFNVNAGIVKNLVEKVAK 107 (312)
T ss_pred CCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985321 122 344566776655555554443
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0039 Score=57.78 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=61.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
..++|-||+|.-|.-+|++|+.+| .+..+.+||..++..+...+. .+...+.+++ ++.++++++ +.+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g-~~~aLAgRs~~kl~~l~~~LG---~~~~~~p~~~--p~~~~~~~~-------~~~ 73 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREG-LTAALAGRSSAKLDALRASLG---PEAAVFPLGV--PAALEAMAS-------RTQ 73 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcC-CchhhccCCHHHHHHHHHhcC---ccccccCCCC--HHHHHHHHh-------cce
Confidence 368999999999999999999999 588999999999998888773 4444444444 666665554 689
Q ss_pred EEEecCcccC
Q 015844 167 VLVCNAAVYL 176 (399)
Q Consensus 167 ~lv~nAg~~~ 176 (399)
+|+||+|.+.
T Consensus 74 VVlncvGPyt 83 (382)
T COG3268 74 VVLNCVGPYT 83 (382)
T ss_pred EEEecccccc
Confidence 9999999763
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.022 Score=55.29 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=55.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+.+++++|.|+ |.+|+..++.+...|+ +|++++|+.++.+.+...+. .. +..+..+.+.+.+.+.
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g---~~---v~~~~~~~~~l~~~l~------- 229 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFG---GR---IHTRYSNAYEIEDAVK------- 229 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcC---ce---eEeccCCHHHHHHHHc-------
Confidence 45677899977 7999999999999997 89999999877666544432 11 2234555555544432
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
..|+||+++++.
T Consensus 230 ~aDvVI~a~~~~ 241 (370)
T TIGR00518 230 RADLLIGAVLIP 241 (370)
T ss_pred cCCEEEEccccC
Confidence 589999998763
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.028 Score=66.69 Aligned_cols=186 Identities=11% Similarity=0.091 Sum_probs=107.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+.++.++|++..++++.+++..|.++|. .|+++..... ...........+..+...-.|..++..++..+....+
T Consensus 1753 ~~~~~~~v~~d~~~~~~~L~~~L~~~G~-~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1827 (2582)
T TIGR02813 1753 QSGANALVIDDDGHNAGVLAEKLIAAGW-QVAVVRSPWV----VSHSASPLASAIASVTLGTIDDTSIEAVIKDIEEKTA 1827 (2582)
T ss_pred ccCceeEEEcCCcchHHHHHHHHHhCCC-eEEEeecccc----ccccccccccccccccccccchHHHHHHHHhhhcccc
Confidence 4577888888899999999999999995 7776642211 0111011112223344555567788888888888788
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+++++||..+..... ....+...+...-...+...|.+.|.+.+.+...+ ++.++.++...|.+|......
T Consensus 1828 ~~~g~i~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~~~--~~~~~~vsr~~G~~g~~~~~~----- 1898 (2582)
T TIGR02813 1828 QIDGFIHLQPQHKSV--ADKVDAIELPEAAKQSLMLAFLFAKLLNVKLATNA--RASFVTVSRIDGGFGYSNGDA----- 1898 (2582)
T ss_pred ccceEEEeccccccc--cccccccccchhhHHHHHHHHHHHHhhchhhccCC--CeEEEEEEecCCccccCCccc-----
Confidence 999999987754210 00111111111112345557788888766655432 468888888776653211000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCC
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 306 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG 306 (399)
+ .+..+ ..-....+++.+|+|+++.|| -.-.+|...+.|.
T Consensus 1899 ---~------------------~~~~~-~~~~~~~a~l~Gl~Ktl~~E~-P~~~~r~vDl~~~ 1938 (2582)
T TIGR02813 1899 ---D------------------SGTQQ-VKAELNQAALAGLTKTLNHEW-NAVFCRALDLAPK 1938 (2582)
T ss_pred ---c------------------ccccc-cccchhhhhHHHHHHhHHHHC-CCCeEEEEeCCCC
Confidence 0 00000 000224578899999999998 2234555555564
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.041 Score=55.27 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=70.0
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-------------HH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-------------DS 150 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-------------~~ 150 (399)
..+.+++|+|+ |.+|+..+..+...|| .|++++++.++.+.+.+ + |.+. +..|..+. +.
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes-l---GA~~--v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES-M---GAEF--LELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CCeE--EEeccccccccccchhhhcchhH
Confidence 45789999986 7999999999999998 89999999877665433 3 3432 22233221 11
Q ss_pred HHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
.+...+.+.+..+..|++|.++|+.....+ ..+++..+..|+. +|.||.++..
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP--------------------~lit~~~v~~mkp----GgvIVdvg~~ 287 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAP--------------------KLITAEMVASMKP----GSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCc--------------------chHHHHHHHhcCC----CCEEEEEccC
Confidence 222222223333579999999998432111 1123445555654 5789988753
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=56.59 Aligned_cols=82 Identities=26% Similarity=0.403 Sum_probs=57.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---------------------HHHHHHHHHhccC--CCcE
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------------------LKAERAAKSAGMA--KENY 138 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---------------------~~~~~~~~~~~~~--~~~~ 138 (399)
..+.+++|+|.|+ ||+|..+|+.|+..|..++.+++++. .+++.+.+.+... ..++
T Consensus 20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 3678889999996 78999999999999977999998863 2344444444432 3456
Q ss_pred EEEEecCCCHHHHHHHHHHHHHcCCCccEEEecC
Q 015844 139 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (399)
Q Consensus 139 ~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nA 172 (399)
..+..|++. +.+++++ ...|++|.+.
T Consensus 99 ~~~~~~~~~-~~~~~~~-------~~~DlVid~~ 124 (338)
T PRK12475 99 VPVVTDVTV-EELEELV-------KEVDLIIDAT 124 (338)
T ss_pred EEEeccCCH-HHHHHHh-------cCCCEEEEcC
Confidence 667777753 3444443 2578888765
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.013 Score=57.31 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
.++|||||++.++|+.+++.|.+.| .+|++++.+........+.+ .....+...-.+.+...+.+.++.++. ++
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G-~~Vi~~d~~~~~~~~~s~~~----d~~~~~p~p~~d~~~~~~~L~~i~~~~-~i 77 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAG-HTVILADSLKYPLSRFSRAV----DGFYTIPSPRWDPDAYIQALLSIVQRE-NI 77 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHhh----hheEEeCCCCCCHHHHHHHHHHHHHHc-CC
Confidence 5799999999999999999999999 59999988764433222211 122222212234444444444455544 58
Q ss_pred cEEEecCc
Q 015844 166 DVLVCNAA 173 (399)
Q Consensus 166 d~lv~nAg 173 (399)
|+||....
T Consensus 78 d~vIP~~e 85 (389)
T PRK06849 78 DLLIPTCE 85 (389)
T ss_pred CEEEECCh
Confidence 99998765
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=54.75 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=40.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAG 132 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~ 132 (399)
.+++|+++|.|+ ||-+++++..|+..|+.+|.++.|+. ++++.+.+.+.
T Consensus 121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 467899999997 67799999999999988999999984 46667766653
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=56.27 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.+++|+|++|++|..+++.+...|+ +|+.+.++.++.+.+.+.+ |.. .+ .|..+.++..+.+.+... ++
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~-~v--i~~~~~~~~~~~i~~~~~--~g 221 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFD-DA--FNYKEEPDLDAALKRYFP--NG 221 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCc-ee--EEcCCcccHHHHHHHhCC--CC
Confidence 578999999999999999988888997 8888888877666554434 222 11 232222233333333321 46
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++.+.|.
T Consensus 222 vd~v~d~~g~ 231 (338)
T cd08295 222 IDIYFDNVGG 231 (338)
T ss_pred cEEEEECCCH
Confidence 9999988773
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.014 Score=55.61 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC-C-
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R- 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g- 163 (399)
|.++||+||+||+|...++.....|+ .++++..+.++.+ ...++ |... ..|..+.+ +.+++.+.. +
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~-~~~~l---GAd~---vi~y~~~~----~~~~v~~~t~g~ 210 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLE-LLKEL---GADH---VINYREED----FVEQVRELTGGK 210 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHH-HHHhc---CCCE---EEcCCccc----HHHHHHHHcCCC
Confidence 88999999999999999999989997 5555555555544 44433 3322 23344444 333333322 2
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|+++...|.
T Consensus 211 gvDvv~D~vG~ 221 (326)
T COG0604 211 GVDVVLDTVGG 221 (326)
T ss_pred CceEEEECCCH
Confidence 59999998875
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.025 Score=49.98 Aligned_cols=38 Identities=34% Similarity=0.471 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
..+.+++++|.| .||+|.++++.|+..|..++.+++.+
T Consensus 17 ~kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 367888999998 57999999999999998899999887
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.026 Score=53.29 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=72.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|.|+ |++|.++|..|+..|. ..|++++++.+.++.....+... +...... . .+.+. .
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~-----------l 66 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD-----------C 66 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH-----------h
Confidence 5788886 8999999999999995 38999999988777666655321 1222222 1 22221 1
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
...|++|+++|.... + .++. ...+..|. .+++...+.+.+.. +.+.||++|-..
T Consensus 67 ~~aDIVIitag~~~~--~--g~~R---~dll~~N~----~i~~~~~~~i~~~~-~~~~vivvsNP~ 120 (306)
T cd05291 67 KDADIVVITAGAPQK--P--GETR---LDLLEKNA----KIMKSIVPKIKASG-FDGIFLVASNPV 120 (306)
T ss_pred CCCCEEEEccCCCCC--C--CCCH---HHHHHHHH----HHHHHHHHHHHHhC-CCeEEEEecChH
Confidence 369999999997422 1 2233 23444454 45566666666544 357888877543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=55.56 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|++|++|..+++.+...|+ +|+.++++.++.+.+.+++ |... + .|-.+.+.+.+.+.+.. .+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~l---Ga~~-v--i~~~~~~~~~~~i~~~~--~~g 228 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKL---GFDE-A--FNYKEEPDLDAALKRYF--PEG 228 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhc---CCCE-E--EECCCcccHHHHHHHHC--CCC
Confidence 578999999999999999988888997 8888888877655544333 2221 1 23332223333333322 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++.+.|.
T Consensus 229 vD~v~d~vG~ 238 (348)
T PLN03154 229 IDIYFDNVGG 238 (348)
T ss_pred cEEEEECCCH
Confidence 9999998873
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.046 Score=49.84 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=52.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..+.+++|+|+++ +|.++++.+...|+ +|+.+.++.++.+.+ +.+ +... ..|..+.+....+. ....+
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~~---~~~~~ 200 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGA-RVIVTDRSDEKLELA-KEL---GADH---VIDYKEEDLEEELR---LTGGG 200 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCC-eEEEEcCCHHHHHHH-HHh---CCce---eccCCcCCHHHHHH---HhcCC
Confidence 3578999999988 99999999988995 999999887665444 222 2211 12433333333333 22335
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|+++|.
T Consensus 201 ~~d~vi~~~~~ 211 (271)
T cd05188 201 GADVVIDAVGG 211 (271)
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.027 Score=53.88 Aligned_cols=39 Identities=36% Similarity=0.580 Sum_probs=34.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
..+.+++|+|.|+ ||||..+|+.|+..|..++.+++.+.
T Consensus 20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3677889999998 89999999999999987999999863
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.019 Score=54.88 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=52.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
.++||+|++|++|.++++.+...|+.+|+.+++++++.+.+.+++ |... + .|..+. ++.+.+.++.. +++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~-v--i~~~~~-~~~~~i~~~~~--~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDA-A--INYKTD-NVAERLRELCP--EGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcE-E--EECCCC-CHHHHHHHHCC--CCce
Confidence 799999999999999988888889647898888877666555444 2222 2 233322 22233333322 4699
Q ss_pred EEEecCcc
Q 015844 167 VLVCNAAV 174 (399)
Q Consensus 167 ~lv~nAg~ 174 (399)
+++++.|.
T Consensus 227 ~vid~~g~ 234 (345)
T cd08293 227 VYFDNVGG 234 (345)
T ss_pred EEEECCCc
Confidence 99998773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.053 Score=51.37 Aligned_cols=116 Identities=17% Similarity=0.140 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++.|+|+ |++|..+|..|+..|. ..+++++++++.++.....+.... .++... . .+.+.
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~~~---------- 70 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDYSD---------- 70 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCHHH----------
Confidence 4678999998 9999999999998884 379999998877666655554321 122222 1 22221
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
+..-|++|..||.... + .++.. ..++.|.. +++.+.+.+.+.. +++.+|++|-.
T Consensus 71 -~~~adivIitag~~~k--~--g~~R~---dll~~N~~----i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 71 -CKDADLVVITAGAPQK--P--GETRL---DLVEKNLK----IFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred -hCCCCEEEEecCCCCC--C--CCCHH---HHHHHHHH----HHHHHHHHHHHhC-CCeEEEEccCc
Confidence 2369999999998422 1 23333 34555543 4455555555544 25788887643
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.028 Score=52.59 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++++|+|++++||.++++.+...|+ .|+++.++.+..+.+ +.+ +.. ...|..+.+....+.+. .. .++
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~---g~~---~~~~~~~~~~~~~~~~~-~~-~~~ 208 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEAC-RAL---GAD---VAINYRTEDFAEEVKEA-TG-GRG 208 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHc---CCC---EEEeCCchhHHHHHHHH-hC-CCC
Confidence 578999999999999999999999996 899998887665554 333 222 12444444433333332 21 246
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.+|+++|.
T Consensus 209 ~d~vi~~~g~ 218 (323)
T cd05276 209 VDVILDMVGG 218 (323)
T ss_pred eEEEEECCch
Confidence 9999999884
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=54.10 Aligned_cols=73 Identities=30% Similarity=0.471 Sum_probs=54.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+.+++++|.|+ |.+|..+++.|...|+..|++++|+.++.+++.+++. . ..+ +.+++.+.+.
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---~--~~~-----~~~~~~~~l~------- 237 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---G--NAV-----PLDELLELLN------- 237 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC---C--eEE-----eHHHHHHHHh-------
Confidence 67899999987 9999999999999887789999999888877777653 2 111 2233333332
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
..|++|.+.+.
T Consensus 238 ~aDvVi~at~~ 248 (311)
T cd05213 238 EADVVISATGA 248 (311)
T ss_pred cCCEEEECCCC
Confidence 47999998875
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.02 Score=54.41 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|++|++|..+++.+...|+ +|+.+.++.++.+.+ +++ |... + .|..+.+...+.+.... .++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~-~~l---Ga~~-v--i~~~~~~~~~~~~~~~~--~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYL-KKL---GFDV-A--FNYKTVKSLEETLKKAS--PDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCCE-E--EeccccccHHHHHHHhC--CCC
Confidence 578999999999999999988888897 888888887765544 333 3322 1 23333233444443332 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++.+.|.
T Consensus 208 vdvv~d~~G~ 217 (325)
T TIGR02825 208 YDCYFDNVGG 217 (325)
T ss_pred eEEEEECCCH
Confidence 9999988773
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.026 Score=55.86 Aligned_cols=75 Identities=28% Similarity=0.391 Sum_probs=55.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.+++++|.|+ |.+|..+++.|...|+..|++++|+.++.+.+.+.+. .. +.+.++..+.+
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g---~~-------~~~~~~~~~~l------- 240 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG---GE-------AIPLDELPEAL------- 240 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---Cc-------EeeHHHHHHHh-------
Confidence 467899999987 9999999999999997689999999888777766652 11 11223332222
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+||.+.|..
T Consensus 241 ~~aDvVI~aT~s~ 253 (423)
T PRK00045 241 AEADIVISSTGAP 253 (423)
T ss_pred ccCCEEEECCCCC
Confidence 2589999998753
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.11 Score=52.24 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=56.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC-------------CHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-------------SLDS 150 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs-------------~~~~ 150 (399)
..+.+++|.|+ |.+|...++.+...|+ .|++++++.++.+.+.. + +. .++..|.. +.+.
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~-l---Ga--~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS-M---GA--EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CC--eEEeccccccccccccceeecCHHH
Confidence 34578999996 8999999999999997 79999998776554332 3 22 23334432 1334
Q ss_pred HHHHHHHHHHcCCCccEEEecCccc
Q 015844 151 VRQFVDTFRRSGRPLDVLVCNAAVY 175 (399)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~nAg~~ 175 (399)
.+...+.+.+.....|++|+++-+.
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~Talip 258 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIP 258 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccC
Confidence 4444444555556799999999553
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.027 Score=54.81 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+++|+|.|+ ||+|..+++.|+..|..++.+++++
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 577888999965 8999999999999998899999987
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.04 Score=53.50 Aligned_cols=75 Identities=29% Similarity=0.429 Sum_probs=59.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++++++||.|+ |-+|.-+|++|+++|...|+++.|+.++++++++++. +++...+.+...+
T Consensus 175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~----------~~~~~l~el~~~l------- 236 (414)
T COG0373 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG----------AEAVALEELLEAL------- 236 (414)
T ss_pred ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC----------CeeecHHHHHHhh-------
Confidence 488999999997 5799999999999998899999999999999988874 2222333333333
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+||.+.|..
T Consensus 237 ~~~DvVissTsa~ 249 (414)
T COG0373 237 AEADVVISSTSAP 249 (414)
T ss_pred hhCCEEEEecCCC
Confidence 3699999988764
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.08 Score=50.14 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|.|+++++|.++++.+...|+ +|+.+.++..+.+.+.+.+ +.. .+ .|..+.+..+.+. +... +.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~v~-~~~~--~~ 214 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEEL---GFD-AA--INYKTPDLAEALK-EAAP--DG 214 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhc---CCc-eE--EecCChhHHHHHH-Hhcc--CC
Confidence 578999999999999999999999996 8888888876655443323 221 11 2333333333322 2221 46
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++++.|.
T Consensus 215 ~d~vi~~~g~ 224 (329)
T cd05288 215 IDVYFDNVGG 224 (329)
T ss_pred ceEEEEcchH
Confidence 9999998773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.028 Score=53.28 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|+|+++++|.++++.+...|+ .|+.+.++.+..+.+ ..+ +.. .++ |.. ++.+.+. + ...
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---~~~-~~~--~~~---~~~~~~~---~-~~~ 226 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKIL-KEL---GAD-YVI--DGS---KFSEDVK---K-LGG 226 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH-HHc---CCc-EEE--ecH---HHHHHHH---h-ccC
Confidence 478999999999999999999999996 888888887655444 222 221 111 221 1222222 2 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++++++|.
T Consensus 227 ~d~v~~~~g~ 236 (332)
T cd08259 227 ADVVIELVGS 236 (332)
T ss_pred CCEEEECCCh
Confidence 9999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.036 Score=53.12 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=53.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.-+|+.+||.||+||+|.+.++.....|+.+|+.+ ++.+.. ++.+++. .. ...|..+++-++.+.+.. .
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~-~s~e~~-~l~k~lG---Ad---~vvdy~~~~~~e~~kk~~---~ 223 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTA-CSKEKL-ELVKKLG---AD---EVVDYKDENVVELIKKYT---G 223 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEE-cccchH-HHHHHcC---Cc---EeecCCCHHHHHHHHhhc---C
Confidence 34678999999999999999998888895344444 443333 3444442 22 235777744433333322 5
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
+++|+|+-|.|..
T Consensus 224 ~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 224 KGVDVVLDCVGGS 236 (347)
T ss_pred CCccEEEECCCCC
Confidence 6899999999963
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.079 Score=45.79 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCc---EEEEEecCCCHHHHHHHHHHHHHc
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~---~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|-.|++.|. ++..+++.+ .+|+.++++++..+.+.+.+...+.+ +.++.+|+.+. +.+
T Consensus 23 ~~~~vLd~G~G~G~---~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------~~~- 88 (188)
T PRK14968 23 KGDRVLEVGTGSGI---VAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------FRG- 88 (188)
T ss_pred CCCEEEEEccccCH---HHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------ccc-
Confidence 56788888877665 455555567 49999999987766665555433322 77888887542 111
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHH---HHHHHHHHHHhhCCCCCceEEEEec
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF---LLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~---~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
..+|.++.|...... .+.... .+.+...+..+..+.. .+++.+.+.|+. +|.++++.+
T Consensus 89 -~~~d~vi~n~p~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~----gG~~~~~~~ 149 (188)
T PRK14968 89 -DKFDVILFNPPYLPT-EEEEEW-DDWLNYALSGGKDGREVIDRFLDEVGRYLKP----GGRILLLQS 149 (188)
T ss_pred -cCceEEEECCCcCCC-Cchhhh-hhhhhhhhccCcChHHHHHHHHHHHHHhcCC----CeEEEEEEc
Confidence 269999998876432 111111 1222223332222222 245555566654 466666543
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.023 Score=57.04 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=40.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
.+.+++++|+|+ ||+|++++..|++.|+ .|++++|+.++.+.+.+.+
T Consensus 329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la~~~ 375 (477)
T PRK09310 329 PLNNQHVAIVGA-GGAAKAIATTLARAGA-ELLIFNRTKAHAEALASRC 375 (477)
T ss_pred CcCCCEEEEEcC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence 467899999996 7999999999999996 9999999987777666544
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=53.28 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=54.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++||+|||+- |+.+++.|.+.| +.|+...++....+.... .+ ...+..+.-|.+++.+++.+ .++|+
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~~~~~~----~g--~~~v~~g~l~~~~l~~~l~~-----~~i~~ 68 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEGKHLYPI----HQ--ALTVHTGALDPQELREFLKR-----HSIDI 68 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCccccccc----cC--CceEEECCCCHHHHHHHHHh-----cCCCE
Confidence 6999999998 999999999999 699998888654332221 11 22345677777777766654 26999
Q ss_pred EEecCcc
Q 015844 168 LVCNAAV 174 (399)
Q Consensus 168 lv~nAg~ 174 (399)
||+.+..
T Consensus 69 VIDAtHP 75 (256)
T TIGR00715 69 LVDATHP 75 (256)
T ss_pred EEEcCCH
Confidence 9998754
|
This enzyme was found to be a monomer by gel filtration. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.034 Score=56.11 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=56.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+.+++++|.|+ |++|..+++.|...|+.+|+++.|+.++.+.+.+.+. +..+.+ ...++....+ .
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--g~~i~~-----~~~~dl~~al-------~ 328 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--DVEIIY-----KPLDEMLACA-------A 328 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC--CCceEe-----ecHhhHHHHH-------h
Confidence 77899999998 9999999999999997789999999988888776653 222221 1222333332 2
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
..|+||.+.+..
T Consensus 329 ~aDVVIsAT~s~ 340 (519)
T PLN00203 329 EADVVFTSTSSE 340 (519)
T ss_pred cCCEEEEccCCC
Confidence 589999987653
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.029 Score=52.41 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=37.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER 126 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~ 126 (399)
..+.+++++|.|. |++|+++|+.|...|+ +|+++.|+.++.+.
T Consensus 147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 147 FTIHGSNVMVLGF-GRTGMTIARTFSALGA-RVFVGARSSADLAR 189 (287)
T ss_pred CCCCCCEEEEEcC-hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 3678999999998 7799999999999996 99999999765444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.035 Score=54.79 Aligned_cols=75 Identities=23% Similarity=0.434 Sum_probs=55.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+++++|.|+ |.+|..+++.|...|+.+|++++|+.++.+...+.+. .. .+. .++..+.+.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g---~~--~i~-----~~~l~~~l~------ 239 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG---GE--AVK-----FEDLEEYLA------ 239 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC---Ce--Eee-----HHHHHHHHh------
Confidence 477899999997 9999999999999996699999999887776666542 11 121 223333332
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
..|+||.+.+..
T Consensus 240 -~aDvVi~aT~s~ 251 (417)
T TIGR01035 240 -EADIVISSTGAP 251 (417)
T ss_pred -hCCEEEECCCCC
Confidence 589999987653
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.053 Score=49.38 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+++|+|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678889999988 8999999999999998889998775
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.035 Score=55.11 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=53.0
Q ss_pred ccCCCEEEEEcC----------------CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC
Q 015844 83 TLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (399)
Q Consensus 83 ~l~~k~~lVTG~----------------s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs 146 (399)
+|+||++|||+| ||-.|.+||+.+..+|| .|.+++-... +. ....+.++ ++.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA-~VtlI~Gp~~--------~~-~p~~v~~i--~V~ 320 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGA-EVTLISGPVD--------LA-DPQGVKVI--HVE 320 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCC-cEEEEeCCcC--------CC-CCCCceEE--Eec
Confidence 589999999997 67899999999999998 7777764321 11 11234444 344
Q ss_pred CHHHHHHHHHHHHHcCCCccEEEecCcccC
Q 015844 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176 (399)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 176 (399)
..+++ .+.+.+.+. .|++|++|++..
T Consensus 321 ta~eM---~~av~~~~~-~Di~I~aAAVaD 346 (475)
T PRK13982 321 SARQM---LAAVEAALP-ADIAIFAAAVAD 346 (475)
T ss_pred CHHHH---HHHHHhhCC-CCEEEEeccccc
Confidence 44444 444444443 799999999863
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.013 Score=53.77 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+.+.+|+|.|+ ||+|.++|+.|+..|..++.+++.+.
T Consensus 27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 567788999876 69999999999999977999988763
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.057 Score=48.03 Aligned_cols=37 Identities=41% Similarity=0.479 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+++++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 577889999985 8999999999999998889999887
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.048 Score=52.31 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=52.4
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..+++++|+|+ |++|...++.+...|+.+|+++++++++.+.+ +++ |... ..|..+. ++.+ +.+..+
T Consensus 168 ~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~l---Ga~~---vi~~~~~-~~~~----~~~~~g 234 (343)
T PRK09880 168 LQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REM---GADK---LVNPQND-DLDH----YKAEKG 234 (343)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHc---CCcE---EecCCcc-cHHH----HhccCC
Confidence 36889999986 89999999888888976788888887766543 333 3322 1244332 2222 222235
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.++|.
T Consensus 235 ~~D~vid~~G~ 245 (343)
T PRK09880 235 YFDVSFEVSGH 245 (343)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.062 Score=48.42 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=53.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-------------------HHHHHHHHHhccCC--CcEEEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAK--ENYTIM 141 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~ 141 (399)
.+.+++++|.| .||+|.++|+.|+..|..++.+++.+. .+.+.+.+.++... .++..+
T Consensus 18 ~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 57788999998 579999999999999988888886542 23444444444333 345555
Q ss_pred EecCCCHHHHHHHHHHHHHcCCCccEEEecCc
Q 015844 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 142 ~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg 173 (399)
..+++ .+.+.++++ ..|+||.+..
T Consensus 97 ~~~i~-~~~~~~~~~-------~~DvVi~~~d 120 (228)
T cd00757 97 NERLD-AENAEELIA-------GYDLVLDCTD 120 (228)
T ss_pred cceeC-HHHHHHHHh-------CCCEEEEcCC
Confidence 55553 233333332 4787777654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.066 Score=51.61 Aligned_cols=38 Identities=34% Similarity=0.401 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+.+++|+|.|+ ||+|.++++.|+..|..++.+++.+.
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 677889999987 89999999999999988999998863
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.094 Score=42.94 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=53.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-------------------HHHHHHHHHhcc--CCCcEEEEEec
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGM--AKENYTIMHLD 144 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-------------------~~~~~~~~~~~~--~~~~~~~~~~D 144 (399)
+++++|.|+ ||+|.++++.|+..|..++.+++.+. .+.+.+.+.+.. +..++..+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 457888875 79999999999999988899987741 234444444433 24567777777
Q ss_pred CCCHHHHHHHHHHHHHcCCCccEEEecCc
Q 015844 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 145 vs~~~~v~~~~~~~~~~~g~id~lv~nAg 173 (399)
+ +.+...++++ ..|++|.+..
T Consensus 81 ~-~~~~~~~~~~-------~~d~vi~~~d 101 (135)
T PF00899_consen 81 I-DEENIEELLK-------DYDIVIDCVD 101 (135)
T ss_dssp C-SHHHHHHHHH-------TSSEEEEESS
T ss_pred c-cccccccccc-------CCCEEEEecC
Confidence 7 3444555553 5788887643
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.046 Score=59.39 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCc-------------EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKW-------------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV 151 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~-------------~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v 151 (399)
..|.++|.|+ |.||..+++.|++.+-. .|.+++++.+.++.+.+.+ .++.++++|++|.+++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----ENAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----CCCceEEeecCCHHHH
Confidence 3568999997 89999999999976421 3888889988777776654 2456789999999887
Q ss_pred HHHHHHHHHcCCCccEEEecCcc
Q 015844 152 RQFVDTFRRSGRPLDVLVCNAAV 174 (399)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~nAg~ 174 (399)
.++++ .+|+||++...
T Consensus 643 ~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 643 LKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred HHhhc-------CCCEEEECCCc
Confidence 77665 59999998764
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.017 Score=52.08 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+++.+++|.|. ||+|.++++.|++.|..++.+++.+.
T Consensus 8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 567788999886 79999999999999988999998763
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.012 Score=42.23 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=21.2
Q ss_pred CEEEEEcCCChHHHH--HHHHHHHcCCcEEEEeecC
Q 015844 87 GSVIITGASSGLGLA--TAKALAETGKWHIIMACRD 120 (399)
Q Consensus 87 k~~lVTG~s~gIG~a--ia~~l~~~Ga~~vv~~~r~ 120 (399)
|++||+|+|+|.|++ |+..| ..|| ..+-++..
T Consensus 40 K~VLViGaStGyGLAsRIa~aF-g~gA-~TiGV~fE 73 (78)
T PF12242_consen 40 KKVLVIGASTGYGLASRIAAAF-GAGA-DTIGVSFE 73 (78)
T ss_dssp SEEEEES-SSHHHHHHHHHHHH-CC---EEEEEE--
T ss_pred ceEEEEecCCcccHHHHHHHHh-cCCC-CEEEEeec
Confidence 789999999999999 55555 6776 66666554
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.072 Score=49.99 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++++|+|+++++|.++++.+...|+ +|+++.++.+..+.+ ..+ +.+. ..+..+.+....+... .. ..+
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~~~~-~~-~~~ 208 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAAC-EAL---GADI---AINYREEDFVEVVKAE-TG-GKG 208 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCcE---EEecCchhHHHHHHHH-cC-CCC
Confidence 578999999999999999999999996 888988887665533 333 2221 1233333333333322 11 135
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|.+|+++|
T Consensus 209 ~d~~i~~~~ 217 (325)
T TIGR02824 209 VDVILDIVG 217 (325)
T ss_pred eEEEEECCc
Confidence 999999887
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.081 Score=49.94 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=67.5
Q ss_pred EEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 89 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+.|+|++|.+|..+|..|+..| +..++++++++ .+..+..+........+..+.-.+ + ..+.+...|+
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~--~-------~~~~~~daDi 70 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEE--G-------LENALKGADV 70 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCC--c-------hHHHcCCCCE
Confidence 6899999999999999999887 35799999875 111111111111111111101000 0 1122347999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+|..||.... + ..+ -.+.+..|+. +++.+.+.+.+.. +++.||++|-..
T Consensus 71 vvitaG~~~~--~--g~~---R~dll~~N~~----I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 71 VVIPAGVPRK--P--GMT---RDDLFNVNAG----IVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred EEEeCCCCCC--C--Ccc---HHHHHHHhHH----HHHHHHHHHHHhC-CCeEEEEecCch
Confidence 9999997422 1 223 2345666665 5666666666654 457888877544
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.063 Score=48.25 Aligned_cols=74 Identities=22% Similarity=0.285 Sum_probs=55.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.++|.|+ |-+|..+|+.|.+.| +.|+++.++++..++.... ...++.+.+|-++++.++++= ....|+
T Consensus 2 ~iiIiG~-G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~----~~~~~~v~gd~t~~~~L~~ag------i~~aD~ 69 (225)
T COG0569 2 KIIIIGA-GRVGRSVARELSEEG-HNVVLIDRDEERVEEFLAD----ELDTHVVIGDATDEDVLEEAG------IDDADA 69 (225)
T ss_pred EEEEECC-cHHHHHHHHHHHhCC-CceEEEEcCHHHHHHHhhh----hcceEEEEecCCCHHHHHhcC------CCcCCE
Confidence 4666665 689999999999999 6999999998887764331 125788999999998876651 125777
Q ss_pred EEecCc
Q 015844 168 LVCNAA 173 (399)
Q Consensus 168 lv~nAg 173 (399)
+|-.-|
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 776554
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.1 Score=48.05 Aligned_cols=104 Identities=14% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC-C
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g 163 (399)
.|.|++|++|+|..|.-+.+.---.|+ +|+.++-..++..-+.+++.. . ...|-..+ ++. +.+.+.. .
T Consensus 150 ~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGf---D---~~idyk~~-d~~---~~L~~a~P~ 218 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGF---D---AGIDYKAE-DFA---QALKEACPK 218 (340)
T ss_pred CCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCC---c---eeeecCcc-cHH---HHHHHHCCC
Confidence 589999999999999876655555786 999999998887777665532 1 12344444 222 2333333 3
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~ 230 (399)
.||+.+-|.|.- +..+.++.|... +||+.++-++++
T Consensus 219 GIDvyfeNVGg~---------------------------v~DAv~~~ln~~----aRi~~CG~IS~Y 254 (340)
T COG2130 219 GIDVYFENVGGE---------------------------VLDAVLPLLNLF----ARIPVCGAISQY 254 (340)
T ss_pred CeEEEEEcCCch---------------------------HHHHHHHhhccc----cceeeeeehhhc
Confidence 699999999852 123455666553 699999888876
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.1 Score=47.43 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+++.+|+|.|+ ||+|..+++.|+..|..++.+++.+.
T Consensus 21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 577888999876 79999999999999988999998864
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.22 Score=47.07 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=71.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++.|+|+ |.+|..+|..|+..| +..+++++.+.+.++.....+.... ....+... .|.+. +
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~~-----------~ 69 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYSV-----------T 69 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHHH-----------h
Confidence 36889996 999999999998877 3579999998766655555443221 11111211 22221 1
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
...|++|.+||.... + .++.. ..+..|. -+++.+.+.+.+.. +++.+|++|-..
T Consensus 70 ~~adivvitaG~~~k--~--g~~R~---dll~~N~----~i~~~~~~~i~~~~-p~~~vivvsNP~ 123 (312)
T cd05293 70 ANSKVVIVTAGARQN--E--GESRL---DLVQRNV----DIFKGIIPKLVKYS-PNAILLVVSNPV 123 (312)
T ss_pred CCCCEEEECCCCCCC--C--CCCHH---HHHHHHH----HHHHHHHHHHHHhC-CCcEEEEccChH
Confidence 368999999998532 1 23433 3444554 45566666666654 457888887543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.19 Score=47.76 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=67.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-c-----EEEEeecCh--HHHHHHHHHhccCC----CcEEEEEecCCCHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGK-W-----HIIMACRDF--LKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~-----~vv~~~r~~--~~~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~ 155 (399)
++.|+|++|.+|..+|..|+..|. . .+++++.++ ++++..+..+.... ..+. +.. .+.
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~--~~~------- 74 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-ATT--DPE------- 74 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Eec--ChH-------
Confidence 588999999999999999998873 4 699999854 33443333332211 0111 110 111
Q ss_pred HHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 156 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
+....-|+||..||.... + ..+. .+.+..|.. +++.+.+.+.+...+++.|+++|-
T Consensus 75 ----~~~~daDvVVitAG~~~k--~--g~tR---~dll~~Na~----i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 75 ----EAFKDVDAALLVGAFPRK--P--GMER---ADLLSKNGK----IFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred ----HHhCCCCEEEEeCCCCCC--C--CCcH---HHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeCC
Confidence 112368999999998422 1 2333 344556654 555566666555432567777763
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.085 Score=50.09 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++.|+|+ |.+|..++..++..|...|++++++++.++.....+... +.... +.+ -+|.+ .+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~-~~d~~----~l----- 71 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILG-TNNYE----DI----- 71 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeE-EEe-CCCHH----Hh-----
Confidence 4568899997 889999999999888337999999875543222222111 11111 111 12222 11
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
..-|+||.++|..... ..+. ...+..|. .+.+.+.+.+.+.. +++.+|++|-..
T Consensus 72 --~~ADiVVitag~~~~~----g~~r---~dll~~n~----~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 72 --KDSDVVVITAGVQRKE----EMTR---EDLLTING----KIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred --CCCCEEEECCCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 2589999999974221 2232 34555665 45666666666654 356788876543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=48.75 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|++++|+|.. |+|...++.....|| +|+.++|++++.+.+.+ + |... + .|-+|++..+.+-+ .
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~-l---GAd~-~--i~~~~~~~~~~~~~-------~ 229 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGA-EVIAITRSEEKLELAKK-L---GADH-V--INSSDSDALEAVKE-------I 229 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHH-h---CCcE-E--EEcCCchhhHHhHh-------h
Confidence 48999999998 999988887777996 99999999888765543 3 2332 2 33335555444433 2
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|.+++
T Consensus 230 ~d~ii~tv~ 238 (339)
T COG1064 230 ADAIIDTVG 238 (339)
T ss_pred CcEEEECCC
Confidence 999999988
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.07 Score=49.42 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=53.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+.+|+|.|+ ||+|..+++.|+..|..++.+++.+.-+...+.+ ++.+-.-|+.. .-++.+.+.+.+..
T Consensus 24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnR-------Q~l~~~~diG~-~Kve~a~~~l~~iN 94 (287)
T PRK08223 24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNR-------QAGAMMSTLGR-PKAEVLAEMVRDIN 94 (287)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhcccc-------ccCcChhHCCC-cHHHHHHHHHHHHC
Confidence 677889999986 6999999999999999899999887533333221 22222334433 23444445555555
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
+.+++.+++..+
T Consensus 95 P~v~V~~~~~~l 106 (287)
T PRK08223 95 PELEIRAFPEGI 106 (287)
T ss_pred CCCEEEEEeccc
Confidence 556665555444
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.073 Score=50.41 Aligned_cols=79 Identities=11% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+||+|++|..+++.+...|+ +|+.+.++.++.+.+.+ + |... + .|..+.+..++ +.+.. .+.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~-~---Ga~~-v--i~~~~~~~~~~-v~~~~--~~g 211 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE-L---GFDA-V--FNYKTVSLEEA-LKEAA--PDG 211 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-c---CCCE-E--EeCCCccHHHH-HHHHC--CCC
Confidence 578999999999999999888888997 89888888766554433 3 3321 2 23333332222 22222 146
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++.+.|.
T Consensus 212 vd~vld~~g~ 221 (329)
T cd08294 212 IDCYFDNVGG 221 (329)
T ss_pred cEEEEECCCH
Confidence 9999988763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=44.22 Aligned_cols=32 Identities=38% Similarity=0.407 Sum_probs=28.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
++|.|+ ||+|..+++.|+..|..++.+++.+.
T Consensus 2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 677775 89999999999999987899999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.38 Score=46.16 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
.+.+++|.|+ |+||..+++.+...|+ +|+++++++++.+.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 4789999999 9999999998888997 899998888776544
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.12 Score=50.03 Aligned_cols=37 Identities=32% Similarity=0.510 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+.+|+|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 577888999986 7999999999999998899999886
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=45.34 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+..++++|.|+ ||+|..+|..|++.|..++++++++
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 577889999987 7999999999999997689999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=49.50 Aligned_cols=115 Identities=13% Similarity=0.025 Sum_probs=66.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-c-----EEEEeecChH--HHHHHHHHhccCC----CcEEEEEecCCCHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-W-----HIIMACRDFL--KAERAAKSAGMAK----ENYTIMHLDLASLDSVRQF 154 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~-----~vv~~~r~~~--~~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~ 154 (399)
+.+.|+|++|.+|..+|..|+..|. . .+++++.++. +++..+..+.... .++.+ .. .+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-~~--~~------- 74 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-TD--DP------- 74 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-ec--Ch-------
Confidence 3789999999999999999988763 3 6899988532 2332222221110 11111 10 11
Q ss_pred HHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 155 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
.+.+..-|++|..||.... + ..+. .+.+..|. .+++.+.+.+.+...+++.+|++|-
T Consensus 75 ----y~~~~daDiVVitaG~~~k--~--g~tR---~dll~~Na----~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 75 ----NVAFKDADVALLVGARPRG--P--GMER---KDLLEANG----AIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred ----HHHhCCCCEEEEeCCCCCC--C--CCcH---HHHHHHHH----HHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 1223469999999997422 1 2233 34455554 4566666666664323577777764
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.31 Score=48.19 Aligned_cols=114 Identities=12% Similarity=0.041 Sum_probs=72.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHc-------C-CcEEEEeecChHHHHHHHHHhccCC----CcEEEEEecCCCHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAET-------G-KWHIIMACRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~-------G-a~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~ 155 (399)
++.|+|++|.+|.++|..|+.. | +.++++++++++.++..+.++...- .++. +.. .+.+.
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~-i~~--~~ye~----- 173 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVS-IGI--DPYEV----- 173 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceE-Eec--CCHHH-----
Confidence 6899999999999999999987 5 2479999999887776665554321 1221 111 12221
Q ss_pred HHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 156 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
+...|++|..||... .+ .++. .+.++.|. .+++...+.+.+...+.+.||++|-
T Consensus 174 ------~kdaDiVVitAG~pr--kp--G~tR---~dLl~~N~----~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 174 ------FQDAEWALLIGAKPR--GP--GMER---ADLLDING----QIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred ------hCcCCEEEECCCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 236999999999742 21 2333 34455665 4556666666662113577777764
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.096 Score=52.28 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=43.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 153 (399)
.++|.|+ |.+|..+++.|.+.| ..|++++++.+..+.+.+.. .+.++.+|.++...+++
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g-~~v~vid~~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGEN-NDVTVIDTDEERLRRLQDRL-----DVRTVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhc-----CEEEEEeCCCCHHHHHH
Confidence 5888887 999999999999999 59999999987766554321 34555666666554443
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.19 Score=47.35 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=67.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++.|+|++|.+|..+|..|+..| +..+++++.+ .++..+..+...........+. .+ +++ .+.+...|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~-~~-~~~-------y~~~~daD 70 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYL-GP-EEL-------KKALKGAD 70 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEec-CC-Cch-------HHhcCCCC
Confidence 57899999999999999999887 3579999887 3222222222111111111110 11 011 12234699
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
++|.+||.... + ..+. ...++.|..- ++.+.+.+.+.. +.+.||++|-..
T Consensus 71 ivvitaG~~~k--~--g~tR---~dll~~N~~i----~~~i~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 71 VVVIPAGVPRK--P--GMTR---DDLFNINAGI----VRDLATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred EEEEeCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHHhC-CCeEEEEccCch
Confidence 99999998422 1 2233 3456666554 444444554443 357888887544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.1 Score=48.91 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=35.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~ 125 (399)
.+.+++++|.|. |++|+.+++.|...|+ +|++++|+.+..+
T Consensus 149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~ 189 (296)
T PRK08306 149 TIHGSNVLVLGF-GRTGMTLARTLKALGA-NVTVGARKSAHLA 189 (296)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 567999999997 7899999999999997 9999999976543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.059 Score=45.97 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
++.+|+++|.|++.-+|..+++.|.++|+ +|.++.|+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 68999999999966679999999999997 89888886
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.13 Score=48.19 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++++|+|+++++|.++++.+...|+ +|+.+.++..+.+.+ ..+ +.. .++ |.......+.+.+ ... ...
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~---g~~-~~~--~~~~~~~~~~~~~-~~~-~~~ 213 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDAL-LAL---GAA-HVI--VTDEEDLVAEVLR-ITG-GKG 213 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHc---CCC-EEE--ecCCccHHHHHHH-HhC-CCC
Confidence 578999999999999999999999996 899888887665544 322 221 222 2222222222222 221 225
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.+++++|.
T Consensus 214 ~d~vi~~~~~ 223 (328)
T cd08268 214 VDVVFDPVGG 223 (328)
T ss_pred ceEEEECCch
Confidence 9999998774
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.11 Score=48.90 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=28.3
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
|+|.|+ ||||.++++.|+..|..++.+++.+.
T Consensus 2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 678885 89999999999999998999998764
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.079 Score=49.27 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.++||.++|.|.++-.|+.++..|.++|| .|.++.|.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~ 192 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR 192 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 67899999999988799999999999998 88888763
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.4 Score=46.05 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=70.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+.+.|+|+ |.+|..+|..|+..|. ..+++++.+++.++..+..+.... ... -+..+ .+.+ . +
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~~-~dy~-------~----~ 103 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILAS-TDYA-------V----T 103 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEeC-CCHH-------H----h
Confidence 58999996 9999999999988773 579999998766655554443221 112 12211 1222 1 2
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
..-|++|..||.... + .++.. ..+..|. .+++.+.+.+.+.. +++.+|++|-..
T Consensus 104 ~daDiVVitAG~~~k--~--g~tR~---dll~~N~----~I~~~i~~~I~~~~-p~~ivivvtNPv 157 (350)
T PLN02602 104 AGSDLCIVTAGARQI--P--GESRL---NLLQRNV----ALFRKIIPELAKYS-PDTILLIVSNPV 157 (350)
T ss_pred CCCCEEEECCCCCCC--c--CCCHH---HHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecCch
Confidence 369999999998532 1 22332 3344444 45566666665543 357888887433
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.15 Score=40.39 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=51.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEE
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (399)
++|.|. +.+|+.+++.|.+.+ ..|+++.++++..+.+.+. .+.++.+|.++++.++++-- .+.+.+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i------~~a~~v 66 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG-IDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGI------EKADAV 66 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTG------GCESEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCc------cccCEE
Confidence 567776 589999999999977 5999999998776665543 26788999999998776521 256766
Q ss_pred EecCc
Q 015844 169 VCNAA 173 (399)
Q Consensus 169 v~nAg 173 (399)
|....
T Consensus 67 v~~~~ 71 (116)
T PF02254_consen 67 VILTD 71 (116)
T ss_dssp EEESS
T ss_pred EEccC
Confidence 65443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.2 Score=48.52 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.+.++||+|+ |+||...++.+...|+.+|+.++++.++.+.+ +++ |... ..|..+ .+.+.+.+.++.. +
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~---Ga~~---~i~~~~~~~~~~~~v~~~~~--~ 254 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKL---GATD---CVNPNDYDKPIQEVIVEITD--G 254 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---CCCe---EEcccccchhHHHHHHHHhC--C
Confidence 4789999975 99999998888888975799998887776554 333 2221 224332 2233333333332 3
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.++|.
T Consensus 255 g~d~vid~~G~ 265 (368)
T TIGR02818 255 GVDYSFECIGN 265 (368)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.17 Score=48.32 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=52.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..+.+++|+|+ |++|..+++.+...|+.+|+++++++++.+.+ +++ |.. ...|..+.+ .+++.+ +.. ..
T Consensus 162 ~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~---ga~---~~i~~~~~~-~~~~~~-~~~-~~ 230 (339)
T cd08239 162 SGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL---GAD---FVINSGQDD-VQEIRE-LTS-GA 230 (339)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---CCC---EEEcCCcch-HHHHHH-HhC-CC
Confidence 34889999986 89999999998889984498898887765544 334 222 123444433 333322 211 23
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.+.|.
T Consensus 231 ~~d~vid~~g~ 241 (339)
T cd08239 231 GADVAIECSGN 241 (339)
T ss_pred CCCEEEECCCC
Confidence 69999998874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.13 Score=45.15 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=32.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+++++++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 577889999975 6799999999999999889998765
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.38 Score=46.73 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=68.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcE------EEEe--ecChHHHHHHHHHhccCC----CcEEEEEecCCCHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWH------IIMA--CRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~------vv~~--~r~~~~~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~ 155 (399)
++.|+|++|.+|..+|..|+..|... ++++ +++.+.++..+.++...- .++. +.. .+.+.
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~-i~~--~~y~~----- 117 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVS-IGI--DPYEV----- 117 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceE-Eec--CCHHH-----
Confidence 69999999999999999999887422 3334 777777665555543221 1111 111 12111
Q ss_pred HHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 156 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
+...|++|..||... .+ ..+. .+.+..|. .+++.+.+.+.+...+.+.||++|-
T Consensus 118 ------~kdaDIVVitAG~pr--kp--g~tR---~dll~~N~----~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 118 ------FEDADWALLIGAKPR--GP--GMER---ADLLDING----QIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred ------hCCCCEEEECCCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 236999999999742 21 2233 34455554 4556666666663334577887774
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.11 Score=38.78 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=31.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r 119 (399)
++.+++++|.|. |+.|+.+++.|.+.|...|.+.+|
T Consensus 20 ~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 567899999999 999999999999985468888777
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.17 Score=44.61 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+++||.+||.|| |.+|...++.|.+.|+ +|++++++.
T Consensus 6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga-~V~VIs~~~ 43 (202)
T PRK06718 6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGA-HIVVISPEL 43 (202)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence 4789999999998 8999999999999996 888888764
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.16 Score=44.93 Aligned_cols=204 Identities=12% Similarity=0.030 Sum_probs=113.9
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++-.+.++-|+.+..|.++++.-...| ..|..+.|+..+ ...+.. ...+.+...|.-...-.+..
T Consensus 47 ~~dve~e~tlvlggnpfsgs~vlk~A~~vv-~svgilsen~~k--~~l~sw---~~~vswh~gnsfssn~~k~~------ 114 (283)
T KOG4288|consen 47 KQDVEVEWTLVLGGNPFSGSEVLKNATNVV-HSVGILSENENK--QTLSSW---PTYVSWHRGNSFSSNPNKLK------ 114 (283)
T ss_pred hhhhhHHHHhhhcCCCcchHHHHHHHHhhc-eeeeEeecccCc--chhhCC---CcccchhhccccccCcchhh------
Confidence 335555678899999999999999999999 599999888542 222222 23445555554332211111
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
..++..++-++|.... ...+..+|=....+..+++.+.-. .++++||--.... +
T Consensus 115 -l~g~t~v~e~~ggfgn-----------~~~m~~ing~ani~a~kaa~~~gv------~~fvyISa~d~~~---~----- 168 (283)
T KOG4288|consen 115 -LSGPTFVYEMMGGFGN-----------IILMDRINGTANINAVKAAAKAGV------PRFVYISAHDFGL---P----- 168 (283)
T ss_pred -hcCCcccHHHhcCccc-----------hHHHHHhccHhhHHHHHHHHHcCC------ceEEEEEhhhcCC---C-----
Confidence 1245555666665421 123344555555555566544322 4999998543311 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc-cch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~-~~~ 319 (399)
++-. ..|-.+|.+.+ .|+....+.|-..+.||+|....-... ..+
T Consensus 169 --------------------------~~i~-rGY~~gKR~AE-------~Ell~~~~~rgiilRPGFiyg~R~v~g~~~p 214 (283)
T KOG4288|consen 169 --------------------------PLIP-RGYIEGKREAE-------AELLKKFRFRGIILRPGFIYGTRNVGGIKSP 214 (283)
T ss_pred --------------------------Cccc-hhhhccchHHH-------HHHHHhcCCCceeeccceeecccccCccccc
Confidence 1111 25778886533 233334467777899999975411110 011
Q ss_pred h-------h---hhhchhhHHHH-----hcCCCChHHHHHHHHHhhcCCCCC
Q 015844 320 L-------F---RLLFPPFQKYI-----TKGYVSEDEAGKRLAQVVSDPSLT 356 (399)
Q Consensus 320 ~-------~---~~~~~~~~~~~-----~~~~~~pee~a~~v~~l~~~~~~~ 356 (399)
. . ....++..+.+ ....++.|++|.+++..+.++...
T Consensus 215 L~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f~ 266 (283)
T KOG4288|consen 215 LHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDFK 266 (283)
T ss_pred HHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCcC
Confidence 1 0 11111222222 233568899999999999998763
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.21 Score=48.71 Aligned_cols=80 Identities=21% Similarity=0.151 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (399)
.|.++||.|+ |+||..+++.+...|+.+|+.++++.++.+.+ +++ |... + .|..+. +.+.+.+.++.. +
T Consensus 198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a-~~~---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 267 (381)
T PLN02740 198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKG-KEM---GITD-F--INPKDSDKPVHERIREMTG--G 267 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH-HHc---CCcE-E--EecccccchHHHHHHHHhC--C
Confidence 5789999985 99999999988889975689898887776654 333 3322 2 243332 123333333322 2
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.+.|.
T Consensus 268 g~dvvid~~G~ 278 (381)
T PLN02740 268 GVDYSFECAGN 278 (381)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
|
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.25 Score=45.09 Aligned_cols=87 Identities=24% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCEEEEEcCCChHHHHHH--HHHHHcCCcEEEEee-cCh-----HH----HHHHHHH-hccCCCcEEEEEecCCCHHHHH
Q 015844 86 KGSVIITGASSGLGLATA--KALAETGKWHIIMAC-RDF-----LK----AERAAKS-AGMAKENYTIMHLDLASLDSVR 152 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia--~~l~~~Ga~~vv~~~-r~~-----~~----~~~~~~~-~~~~~~~~~~~~~Dvs~~~~v~ 152 (399)
-|.|||.|+|+|-|++.- ..|- .||..+=+.. |.. .. -....++ .++.|--..-+..|.-+.+--+
T Consensus 41 PKkVLviGaSsGyGLa~RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaFS~e~k~ 119 (398)
T COG3007 41 PKKVLVIGASSGYGLAARISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAFSDEMKQ 119 (398)
T ss_pred CceEEEEecCCcccHHHHHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchhhHHHHH
Confidence 368999999999998732 2332 4564443321 211 00 0111111 1223444556778998888889
Q ss_pred HHHHHHHHcCCCccEEEecCc
Q 015844 153 QFVDTFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 153 ~~~~~~~~~~g~id~lv~nAg 173 (399)
.+++.|++.+|++|.+|+.-+
T Consensus 120 kvIe~Ik~~~g~vDlvvYSlA 140 (398)
T COG3007 120 KVIEAIKQDFGKVDLVVYSLA 140 (398)
T ss_pred HHHHHHHHhhccccEEEEecc
Confidence 999999999999999998654
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.31 Score=45.34 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC-CHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVDT 157 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs-~~~~v~~~~~~ 157 (399)
.|+++.|+|+.| ||.--++.--..| .+|++++++..+-+++.+.+. .... .|.+ |++.++++.+.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG-~rV~vis~~~~kkeea~~~LG---Ad~f---v~~~~d~d~~~~~~~~ 246 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMG-MRVTVISTSSKKKEEAIKSLG---ADVF---VDSTEDPDIMKAIMKT 246 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhC-cEEEEEeCCchhHHHHHHhcC---ccee---EEecCCHHHHHHHHHh
Confidence 799999999877 9976555555668 599999999877777776663 3332 4566 77777777663
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.2 Score=41.46 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=27.4
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 678886 8999999999999998789988765
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=47.61 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=68.5
Q ss_pred EEEEcCCChHHHHHHHHHHHcC--C-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 89 VIITGASSGLGLATAKALAETG--K-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~G--a-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+.|+|++|.+|..++..|+..| . ..|+++++++++++.....++..-........-.++ +..+.+ ...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~--d~~~~~-------~~a 71 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD--DPYEAF-------KDA 71 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC--chHHHh-------CCC
Confidence 4689998899999999999887 1 389999998877666555553221110000111111 111222 369
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
|++|..+|..... ..+. ...+..| .-+.+.+.+.+.+.. +++.+|++|-..
T Consensus 72 DiVv~t~~~~~~~----g~~r---~~~~~~n----~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 72 DVVIITAGVGRKP----GMGR---LDLLKRN----VPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CEEEECCCCCCCc----CCCH---HHHHHHH----HHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 9999999975322 1121 1223333 344555555565554 457888876433
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.22 Score=48.22 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (399)
.+.++||.|+ |+||..+++.+...|+.+|+.++++.++.+.+ +++ |... + .|..+. +++.+.+.++.. +
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 255 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF---GATD-C--VNPKDHDKPIQQVLVEMTD--G 255 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---CCCE-E--EcccccchHHHHHHHHHhC--C
Confidence 4789999975 89999999998889975789999988776644 333 3321 1 243332 234444444332 3
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.+.|.
T Consensus 256 g~d~vid~~g~ 266 (368)
T cd08300 256 GVDYTFECIGN 266 (368)
T ss_pred CCcEEEECCCC
Confidence 69999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.091 Score=49.66 Aligned_cols=115 Identities=19% Similarity=0.122 Sum_probs=65.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecCh--HHHHHHHHHhcc----CCCcEEEEEecCC-CHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGM----AKENYTIMHLDLA-SLDSVRQFVDTFR 159 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~--~~~~~~~~~~~~----~~~~~~~~~~Dvs-~~~~v~~~~~~~~ 159 (399)
++.|+|++|.+|..++..|+..|. ..|++++|+. ++++.....+.. .+... ....+ |.+ .
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~---~i~~~~d~~---~------ 69 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA---EIKISSDLS---D------ 69 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc---EEEECCCHH---H------
Confidence 688999999999999999999983 2589999854 333322222211 11111 11111 211 1
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
....|++|.++|... .+ ..+. ...+..|+.-...+ .+.+.+.. +.+.||++++..
T Consensus 70 --l~~aDiViitag~p~--~~--~~~r---~dl~~~n~~i~~~~----~~~i~~~~-~~~~viv~~npv 124 (309)
T cd05294 70 --VAGSDIVIITAGVPR--KE--GMSR---LDLAKKNAKIVKKY----AKQIAEFA-PDTKILVVTNPV 124 (309)
T ss_pred --hCCCCEEEEecCCCC--CC--CCCH---HHHHHHHHHHHHHH----HHHHHHHC-CCeEEEEeCCch
Confidence 236999999999742 11 2232 23445555444444 44444433 246888888754
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.67 Score=43.71 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=70.8
Q ss_pred EEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccC----C-CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 89 VIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----K-ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~----~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+.|.|+ |.+|..+|..|+..|. ..+++++.+++.++..+..+... + .++.+.. .|.+. +
T Consensus 2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~---~~y~~-----------~ 66 (307)
T cd05290 2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA---GDYDD-----------C 66 (307)
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE---CCHHH-----------h
Confidence 567887 9999999999998873 57999999876665555444331 1 1333332 23221 2
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
..-|++|..||.... + .++.+ -.+.+..| ..+++.+.+.+.+.. +.+.+|++|-.
T Consensus 67 ~~aDivvitaG~~~k--p--g~tr~-R~dll~~N----~~I~~~i~~~i~~~~-p~~i~ivvsNP 121 (307)
T cd05290 67 ADADIIVITAGPSID--P--GNTDD-RLDLAQTN----AKIIREIMGNITKVT-KEAVIILITNP 121 (307)
T ss_pred CCCCEEEECCCCCCC--C--CCCch-HHHHHHHH----HHHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 369999999998532 1 22311 12334445 456677777777765 45677776643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.6 Score=45.75 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=49.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..+.+++| +|.|+||..+++.+...|+..|++.+++.++.+.+ +++ |.. ..|.....+..+.+.++.. ..
T Consensus 184 ~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a-~~~---Ga~----~v~~~~~~~~~~~v~~~~~-~~ 253 (393)
T TIGR02819 184 GPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQA-RSF---GCE----TVDLSKDATLPEQIEQILG-EP 253 (393)
T ss_pred CCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH-HHc---CCe----EEecCCcccHHHHHHHHcC-CC
Confidence 35789999 55699999999988889985566566665554443 333 332 1333322223232333222 23
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
.+|++|.+.|..
T Consensus 254 g~Dvvid~~G~~ 265 (393)
T TIGR02819 254 EVDCAVDCVGFE 265 (393)
T ss_pred CCcEEEECCCCc
Confidence 599999999964
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.26 Score=48.50 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.|.+++|.||+|+||...++.+... |+.+|++++++.++.+.+.+.+... |.... ..|..+.+++.+.+.++
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~--~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELL--YVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEE--EECCCccccHHHHHHHH
Confidence 4679999999999999988766665 4457999999988776554422111 22211 23433322333333333
Q ss_pred HHcCCCccEEEecCcc
Q 015844 159 RRSGRPLDVLVCNAAV 174 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~ 174 (399)
.. ...+|.+|.+.|.
T Consensus 253 t~-g~g~D~vid~~g~ 267 (410)
T cd08238 253 TG-GQGFDDVFVFVPV 267 (410)
T ss_pred hC-CCCCCEEEEcCCC
Confidence 22 2358999988763
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.12 Score=46.65 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=35.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~ 125 (399)
.+.+++|+|.|+ ||+|.++++.|+..|..++.+++.+.-+..
T Consensus 24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~s 65 (231)
T PRK08328 24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELS 65 (231)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChh
Confidence 577888999986 699999999999999889999988754433
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.26 Score=43.32 Aligned_cols=37 Identities=35% Similarity=0.426 Sum_probs=32.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+.+++|.|++ |+|.++++.|+..|..++.+++.+
T Consensus 16 ~L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 16 KLRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECC
Confidence 5677889999765 699999999999999889998876
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.098 Score=48.40 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
+++++|.|+ ||-+++++..|++.|+.+|.+++|+.++.+.+.+.+
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~ 166 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY 166 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence 468889886 899999999999999878999999998888776654
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.39 Score=45.21 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=68.9
Q ss_pred EEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCC---cEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 90 IITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 90 lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~---~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
.|.|+ |++|..+|..|+..| +..+++++++.+.++.....+..... ......+ .|.+ . ...-
T Consensus 2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~-------~----l~~a 67 (300)
T cd00300 2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYA-------D----AADA 67 (300)
T ss_pred EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHH-------H----hCCC
Confidence 56776 789999999999888 34799999988776666555533211 1121111 2211 1 2369
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
|++|.+||.... + .++. ...+..|+ -+++.+.+.+.+.. +++.+|++|-..
T Consensus 68 DiVIitag~p~~--~--~~~R---~~l~~~n~----~i~~~~~~~i~~~~-p~~~viv~sNP~ 118 (300)
T cd00300 68 DIVVITAGAPRK--P--GETR---LDLINRNA----PILRSVITNLKKYG-PDAIILVVSNPV 118 (300)
T ss_pred CEEEEcCCCCCC--C--CCCH---HHHHHHHH----HHHHHHHHHHHHhC-CCeEEEEccChH
Confidence 999999997422 1 2233 23344443 45566666666654 467888887544
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.21 Score=47.00 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|+|+++++|.++++.+...|+ +|+.+.++.++.+.+ +.+ +... ..|..+.+..+.+.+. . ....
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~~~~-~-~~~~ 211 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALV-RAL---GADV---AVDYTRPDWPDQVREA-L-GGGG 211 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHc---CCCE---EEecCCccHHHHHHHH-c-CCCC
Confidence 477999999999999999999999996 899998887765544 333 2221 1244443333333221 1 1235
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.++++.|.
T Consensus 212 ~d~vl~~~g~ 221 (324)
T cd08244 212 VTVVLDGVGG 221 (324)
T ss_pred ceEEEECCCh
Confidence 9999998763
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.27 Score=47.34 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc-CC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~g 163 (399)
.+.+++|+|+ |-||+..+..+...|+.+|+++++++++++.+.+... .... .+.... .....+.+. .|
T Consensus 168 ~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---~~~~---~~~~~~----~~~~~~~~~t~g 236 (350)
T COG1063 168 PGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---ADVV---VNPSED----DAGAEILELTGG 236 (350)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---CeEe---ecCccc----cHHHHHHHHhCC
Confidence 3448889886 7999999888888999899999999888876655332 1111 122121 122222222 22
Q ss_pred -CccEEEecCc
Q 015844 164 -PLDVLVCNAA 173 (399)
Q Consensus 164 -~id~lv~nAg 173 (399)
.+|++|-++|
T Consensus 237 ~g~D~vie~~G 247 (350)
T COG1063 237 RGADVVIEAVG 247 (350)
T ss_pred CCCCEEEECCC
Confidence 6999999999
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.36 Score=45.29 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=68.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc-EEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~-~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.|+|+ |+||.++|..|+.++.. .+++++.+++.++..+..+... +.. ..+..| .+.++ +
T Consensus 2 KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~-~~i~~~-~~y~~-----------~ 67 (313)
T COG0039 2 KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSD-VKITGD-GDYED-----------L 67 (313)
T ss_pred eEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCc-eEEecC-CChhh-----------h
Confidence 5789999 99999999999888754 8999999865555444443221 111 112222 22221 2
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
..-|++|..||....+ .++..+ .+..|.. +.+.+.+.+.+... ++.|+.++-.
T Consensus 68 ~~aDiVvitAG~prKp----GmtR~D---Ll~~Na~----I~~~i~~~i~~~~~-d~ivlVvtNP 120 (313)
T COG0039 68 KGADIVVITAGVPRKP----GMTRLD---LLEKNAK----IVKDIAKAIAKYAP-DAIVLVVTNP 120 (313)
T ss_pred cCCCEEEEeCCCCCCC----CCCHHH---HHHhhHH----HHHHHHHHHHhhCC-CeEEEEecCc
Confidence 3699999999985332 234443 4556654 44555555555442 4666666543
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.32 Score=47.34 Aligned_cols=80 Identities=23% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (399)
.+.++||.|+ |+||..+++.+...|+..|++++++.++.+.+ +++ |... + .|..+. +...+.+.++.. +
T Consensus 193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~l---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 262 (378)
T PLN02827 193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTF---GVTD-F--INPNDLSEPIQQVIKRMTG--G 262 (378)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc---CCcE-E--EcccccchHHHHHHHHHhC--C
Confidence 5889999985 99999999888888975677888777665543 333 3321 1 233331 234444443332 3
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.+.|.
T Consensus 263 g~d~vid~~G~ 273 (378)
T PLN02827 263 GADYSFECVGD 273 (378)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.027 Score=43.89 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=31.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+++|+.+||.|| |.+|..-++.|++.|| +|.+++.+.
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEECCch
Confidence 3688999999998 8999999999999997 999998885
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.31 Score=39.25 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=52.3
Q ss_pred EEEEEcCCChHHHHHHHHHHH-cCCcEEEEeecCh----------------------HHHHHHHHHhccCCCcEEEEEec
Q 015844 88 SVIITGASSGLGLATAKALAE-TGKWHIIMACRDF----------------------LKAERAAKSAGMAKENYTIMHLD 144 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~D 144 (399)
+++|.|++|-+|+.+++.+.+ .|..-+..+.|+. ..++++.+. .. +..|
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-----~D---VvID 73 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-----AD---VVID 73 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH------S---EEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-----CC---EEEE
Confidence 588999999999999999998 5642344455654 122222221 12 5579
Q ss_pred CCCHHHHHHHHHHHHHcCCCccEEEecCcc
Q 015844 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174 (399)
Q Consensus 145 vs~~~~v~~~~~~~~~~~g~id~lv~nAg~ 174 (399)
+|.++.+...++.+.+. ++..|+-..|.
T Consensus 74 fT~p~~~~~~~~~~~~~--g~~~ViGTTG~ 101 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKH--GVPLVIGTTGF 101 (124)
T ss_dssp ES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence 99999999999988776 68888877775
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.35 Score=46.78 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (399)
.+.+++|.|+ |+||..+++.+...|+.+|+.++++.++.+.+ +++ |... + .|..+. +++.+.+.++.. +
T Consensus 187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 256 (369)
T cd08301 187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF---GVTE-F--VNPKDHDKPVQEVIAEMTG--G 256 (369)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCce-E--EcccccchhHHHHHHHHhC--C
Confidence 5789999985 89999999888888965799998887765544 333 2221 1 233321 234444444433 3
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|+++.+.|.
T Consensus 257 ~~d~vid~~G~ 267 (369)
T cd08301 257 GVDYSFECTGN 267 (369)
T ss_pred CCCEEEECCCC
Confidence 69999998873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.32 Score=47.16 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|.|+ |+||..+++.+...|+.+|+++++++++.+.+ +++ |... ..|..+.+..+++ .++. .+.
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~---Ga~~---~i~~~~~~~~~~i-~~~~--~~g 259 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL---GATA---TVNAGDPNAVEQV-RELT--GGG 259 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc---CCce---EeCCCchhHHHHH-HHHh--CCC
Confidence 4789999985 89999998888888975688888887776544 333 2221 2344443323322 2222 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 260 ~d~vid~~G~ 269 (371)
T cd08281 260 VDYAFEMAGS 269 (371)
T ss_pred CCEEEECCCC
Confidence 9999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.28 Score=47.29 Aligned_cols=80 Identities=25% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.++||.|+ |++|..+++.+...|+.+|+.++++.++.+.+ +++ |.. .+ .|..+.+..+.+ .+... ...
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~-~~~---Ga~-~~--i~~~~~~~~~~i-~~~~~-~~g 245 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA-REF---GAT-HT--VNSSGTDPVEAI-RALTG-GFG 245 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCc-eE--EcCCCcCHHHHH-HHHhC-CCC
Confidence 4789999985 99999999888888975688888887765554 333 222 11 244333322222 22211 125
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 246 ~d~vid~~g~ 255 (358)
T TIGR03451 246 ADVVIDAVGR 255 (358)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.6 Score=39.53 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|-++||--|.||.|..+++++-..|+ ++|.+..+.++.+.+.+ .|.. ...|-+.++-++++.+-. ....
T Consensus 146 pGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~ake----nG~~---h~I~y~~eD~v~~V~kiT--ngKG 215 (336)
T KOG1197|consen 146 PGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKE----NGAE---HPIDYSTEDYVDEVKKIT--NGKG 215 (336)
T ss_pred CCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHh----cCCc---ceeeccchhHHHHHHhcc--CCCC
Confidence 578999999999999999999999996 88888877666554432 2222 234556655554443321 1236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++.-..|.
T Consensus 216 Vd~vyDsvG~ 225 (336)
T KOG1197|consen 216 VDAVYDSVGK 225 (336)
T ss_pred ceeeeccccc
Confidence 8888877764
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.3 Score=51.05 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=33.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
..+.+.+|+|.| .||+|..++..|+..|..++.+++.+
T Consensus 39 ~kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 39 ERLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 367888999998 57999999999999998899998875
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.57 Score=46.73 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=48.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+|+++|+|.+ |+|.++|+.|+++|+ .|++.+.+.... ..+.++.....+.++..+.. .. .+
T Consensus 2 ~~~~~~~~v~G~g-~~G~~~a~~l~~~g~-~v~~~d~~~~~~--~~~~l~~~~~gi~~~~g~~~-~~----~~------- 65 (445)
T PRK04308 2 TFQNKKILVAGLG-GTGISMIAYLRKNGA-EVAAYDAELKPE--RVAQIGKMFDGLVFYTGRLK-DA----LD------- 65 (445)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEeCCCCch--hHHHHhhccCCcEEEeCCCC-HH----HH-------
Confidence 3568899999985 999999999999995 888887654321 11123221122333332211 11 11
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|.||...|+.
T Consensus 66 ~~~d~vv~spgi~ 78 (445)
T PRK04308 66 NGFDILALSPGIS 78 (445)
T ss_pred hCCCEEEECCCCC
Confidence 2589999999985
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.31 Score=47.64 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+.+|+|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 677889999986 6999999999999998899998875
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.2 Score=42.26 Aligned_cols=123 Identities=12% Similarity=0.079 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHH----HhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK----SAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++.|.| +|.+|..+|..++..|...|++++.+++.++.... .....+....+.. .+|.+ .
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~~-------~--- 71 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNYE-------D--- 71 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCHH-------H---
Confidence 346788999 58899999999999994379999998765432111 1111122222221 12322 1
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
....|+||+++|...... ..+.+.. -.+.+..|+ .+.+.+.+.+.+.. +++.+|++|-..
T Consensus 72 -l~~aDiVI~tag~~~~~~-~~~~~~~-r~~~l~~n~----~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 72 -IAGSDVVIVTAGLTKRPG-KSDKEWN-RDDLLPLNA----KIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred -hCCCCEEEECCCCCCCCC-CCcCCCC-HHHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 126899999999853221 1111111 233445554 45666666666654 346777776544
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.1 Score=42.43 Aligned_cols=112 Identities=22% Similarity=0.180 Sum_probs=66.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.+.|.|+ |.+|..+|..|+..| +..|++++++.+..+.....+.... ....... .+.+ . ..
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~~-------~----l~ 66 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDYA-------D----CK 66 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCHH-------H----hC
Confidence 4778887 899999999999998 3589999999876654333332111 1111111 2221 1 23
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
..|++|.++|..... ..+ ....+..|+ .+.+.+.+.+.+.. ++|.|++++.
T Consensus 67 ~aDiViita~~~~~~----~~~---r~dl~~~n~----~i~~~~~~~l~~~~-~~giiiv~tN 117 (308)
T cd05292 67 GADVVVITAGANQKP----GET---RLDLLKRNV----AIFKEIIPQILKYA-PDAILLVVTN 117 (308)
T ss_pred CCCEEEEccCCCCCC----CCC---HHHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecC
Confidence 699999999974221 122 233444444 44555555555544 3577777764
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.25 Score=47.63 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+++++|+|.|+ ||+|..++..|++.|..++++++.+
T Consensus 173 kL~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCC
Confidence 577889999986 7999999999999998899998775
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.14 Score=41.46 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=52.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccC--------CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMA--------KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~--------~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++-|.|+ |-.|.++++.|.+.| +.|..+ +|+....+.+...+... -.....+-+-+.|. .+..+.+++
T Consensus 12 ~I~iIGa-GrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~L 88 (127)
T PF10727_consen 12 KIGIIGA-GRVGTALARALARAG-HEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQL 88 (127)
T ss_dssp EEEEECT-SCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHHH
Confidence 6778887 789999999999999 476655 57766666655544210 11233344455554 788888888
Q ss_pred HHc--CCCccEEEecCccc
Q 015844 159 RRS--GRPLDVLVCNAAVY 175 (399)
Q Consensus 159 ~~~--~g~id~lv~nAg~~ 175 (399)
... +.+=.+|||+.|..
T Consensus 89 a~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 89 AQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp HCC--S-TT-EEEES-SS-
T ss_pred HHhccCCCCcEEEECCCCC
Confidence 775 33446999999975
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.48 Score=43.91 Aligned_cols=78 Identities=24% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+++++|.|+ |+||..+++.+...|+.+|++++++.++.+. .+++ +... + .|..+. .+.+.++.. ...
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~-a~~~---Ga~~-~--i~~~~~---~~~~~~~~~-~~g 187 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRREL-ALSF---GATA-L--AEPEVL---AERQGGLQN-GRG 187 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHc---CCcE-e--cCchhh---HHHHHHHhC-CCC
Confidence 6789999986 8999999998888897558888887766543 3333 2221 1 222221 122222211 235
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 188 ~d~vid~~G~ 197 (280)
T TIGR03366 188 VDVALEFSGA 197 (280)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.47 Score=44.74 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++++|.|+++++|.++++.+...|+ +|+.+.++.++.+.+ +++ +... + .|..+. . .+.+.... .+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-v--~~~~~~-~-~~~~~~~~--~~~~ 214 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYL-KKL---GAKE-V--IPREEL-Q-EESIKPLE--KQRW 214 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHH-HHc---CCCE-E--EcchhH-H-HHHHHhhc--cCCc
Confidence 67999999999999999999999996 899888887765554 333 2211 1 222222 1 12222221 2358
Q ss_pred cEEEecCc
Q 015844 166 DVLVCNAA 173 (399)
Q Consensus 166 d~lv~nAg 173 (399)
|+++++.|
T Consensus 215 d~vld~~g 222 (326)
T cd08289 215 AGAVDPVG 222 (326)
T ss_pred CEEEECCc
Confidence 98888776
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.43 Score=44.66 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|.|+++++|.++++.....|+ .|+.+.++.++.+.+ .++ +... ++. + .. +..+.+.+. ..+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-~~~-~--~~-~~~~~i~~~---~~~ 208 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALL-KEL---GADE-VVI-D--DG-AIAEQLRAA---PGG 208 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-Hhc---CCcE-EEe-c--Cc-cHHHHHHHh---CCC
Confidence 578999999999999999999999996 788888887665444 333 2221 111 2 21 222222222 246
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|.++++.|
T Consensus 209 ~d~vl~~~~ 217 (320)
T cd08243 209 FDKVLELVG 217 (320)
T ss_pred ceEEEECCC
Confidence 999998876
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.28 Score=48.71 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=34.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~ 129 (399)
++.|.||+|++|.++++.|.+.| ..|++++|+.+...+...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~~r~~~~~~~~a~ 42 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIVTGRDPKKGKEVAK 42 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEEEECChHHHHHHHH
Confidence 58899999999999999999999 599999998766544433
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.25 Score=46.57 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|.|+++++|.++++.....|+ .++++.++.++.+.+.+ + +.. .++ +..+.+..+ .+.+... ..+
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~-~---g~~-~~~--~~~~~~~~~-~i~~~~~-~~~ 208 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRA-L---GIG-PVV--STEQPGWQD-KVREAAG-GAP 208 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHh-c---CCC-EEE--cCCCchHHH-HHHHHhC-CCC
Confidence 578999999999999999999999997 88888887766555433 2 222 122 223322222 2222221 235
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++.+.|.
T Consensus 209 ~d~v~d~~g~ 218 (324)
T cd08292 209 ISVALDSVGG 218 (324)
T ss_pred CcEEEECCCC
Confidence 9999998774
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.24 Score=41.98 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=56.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-------CCCcEEEEEecCCCHHHHHHHHHH--H
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-------AKENYTIMHLDLASLDSVRQFVDT--F 158 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~Dvs~~~~v~~~~~~--~ 158 (399)
++-+.|- |-+|..+|+.|++.| +.|++.+|+.++.+++.+.-.. .-.+..++..=+.+.+++++++.. +
T Consensus 3 ~Ig~IGl-G~mG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 3 KIGFIGL-GNMGSAMARNLAKAG-YEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp EEEEE---SHHHHHHHHHHHHTT-TEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred EEEEEch-HHHHHHHHHHHHhcC-CeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 5667775 799999999999999 6999999998887776654210 001234555568888999998887 6
Q ss_pred HHcCCCccEEEecCc
Q 015844 159 RRSGRPLDVLVCNAA 173 (399)
Q Consensus 159 ~~~~g~id~lv~nAg 173 (399)
.....+=+++|++.-
T Consensus 81 ~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 81 LAGLRPGKIIIDMST 95 (163)
T ss_dssp GGGS-TTEEEEE-SS
T ss_pred hhccccceEEEecCC
Confidence 655544555655443
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.44 Score=42.98 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=27.9
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
++|.| .||+|.++++.|+..|..++.+++.+.
T Consensus 2 VlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVG-AGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 66776 689999999999999988999998864
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.17 Score=41.29 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
+++++++.|.+ .|.++|+.|.+.| ..|+.++.++...+.+.+. .+.++.+|+.+++
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh------CCeEEECcCCCCC
Confidence 45689999976 7788899999999 5999999998866655432 3577888998765
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.18 Score=45.06 Aligned_cols=42 Identities=36% Similarity=0.483 Sum_probs=36.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~ 130 (399)
++.|.||+|.+|.++++.|++.| +.|++.+|+.++.+.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~~~~~~l~~~ 43 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDLEKAEEAAAK 43 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCHHHHHHHHHH
Confidence 58899999999999999999999 6999999998777665543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.7 Score=38.83 Aligned_cols=76 Identities=25% Similarity=0.156 Sum_probs=49.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+.++|-.|++.|. ++..+++.|+.+|+.++.++..++.+.+.+...+.++.++..|+.+. + ..+.+
T Consensus 37 ~~~vLDlGcG~G~---~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~------~-----~~~~f 102 (223)
T PRK14967 37 GRRVLDLCTGSGA---LAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA------V-----EFRPF 102 (223)
T ss_pred CCeEEEecCCHHH---HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh------c-----cCCCe
Confidence 5688888876544 34445555655899999998776655555444444567777776431 1 12479
Q ss_pred cEEEecCccc
Q 015844 166 DVLVCNAAVY 175 (399)
Q Consensus 166 d~lv~nAg~~ 175 (399)
|.||.|....
T Consensus 103 D~Vi~npPy~ 112 (223)
T PRK14967 103 DVVVSNPPYV 112 (223)
T ss_pred eEEEECCCCC
Confidence 9999998654
|
|
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.61 Score=44.03 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|.|+++++|.++++.+...|+ .++++.++.++.+.+ ..+ +... + .|..+.+...+.+.+... ...
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-~--~~~~~~~~~~~~~~~~~~-~~~ 210 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFC-KKL---AAII-L--IRYPDEEGFAPKVKKLTG-EKG 210 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCcE-E--EecCChhHHHHHHHHHhC-CCC
Confidence 578999999999999999999999996 777788887665554 333 2221 1 223333212222222221 135
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|.++++.|
T Consensus 211 ~d~~i~~~~ 219 (334)
T PTZ00354 211 VNLVLDCVG 219 (334)
T ss_pred ceEEEECCc
Confidence 999998876
|
|
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.74 Score=42.51 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|+|++|.||+|..|.-+-+.-.-.|+ +|+..+-+.++..-+..++.. . ...|--++.++.+++.+... ..
T Consensus 153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~---d---~afNYK~e~~~~~aL~r~~P--~G 223 (343)
T KOG1196|consen 153 KGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGF---D---DAFNYKEESDLSAALKRCFP--EG 223 (343)
T ss_pred CCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCC---c---cceeccCccCHHHHHHHhCC--Cc
Confidence 579999999999999876555555797 898888887776665554421 1 11233444455555555322 26
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~ 230 (399)
||+.+-|.|.- ++.+.+..|+.. |||+..+-++.+
T Consensus 224 IDiYfeNVGG~---------------------------~lDavl~nM~~~----gri~~CG~ISqY 258 (343)
T KOG1196|consen 224 IDIYFENVGGK---------------------------MLDAVLLNMNLH----GRIAVCGMISQY 258 (343)
T ss_pred ceEEEeccCcH---------------------------HHHHHHHhhhhc----cceEeeeeehhc
Confidence 99999999852 233445556653 699999876655
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.43 Score=41.08 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=59.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
-++.|++|+=-|++.|+ ++++ .+-.||+.|+.+..+++.++-+.+.....++++.++.+|+++..
T Consensus 42 g~l~g~~V~DlG~GTG~-La~g--a~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~------------ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGI-LAIG--AALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR------------ 106 (198)
T ss_pred CCcCCCEEEEcCCCcCH-HHHH--HHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC------------
Confidence 47899999999987665 2222 23458889999999998888777666666788999999998653
Q ss_pred CCCccEEEecCcc
Q 015844 162 GRPLDVLVCNAAV 174 (399)
Q Consensus 162 ~g~id~lv~nAg~ 174 (399)
+++|.+|.|.-.
T Consensus 107 -~~~dtvimNPPF 118 (198)
T COG2263 107 -GKFDTVIMNPPF 118 (198)
T ss_pred -CccceEEECCCC
Confidence 578899998754
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.8 Score=42.81 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||-|+ |-||...-..+-..||.+|++++-.+.+++.+.+ + |.++......-.+.+.+.+.++...... .
T Consensus 169 ~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~-~ 242 (354)
T KOG0024|consen 169 KGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK-Q 242 (354)
T ss_pred cCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc-C
Confidence 4778999987 6999998888888999999999999888776554 4 4444333333334555555555554432 4
Q ss_pred ccEEEecCccc
Q 015844 165 LDVLVCNAAVY 175 (399)
Q Consensus 165 id~lv~nAg~~ 175 (399)
+|+.|.|.|.-
T Consensus 243 ~d~~~dCsG~~ 253 (354)
T KOG0024|consen 243 PDVTFDCSGAE 253 (354)
T ss_pred CCeEEEccCch
Confidence 99999999873
|
|
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.48 Score=44.54 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|.|+++++|.++++.+...|+ +|+++.++.++.+.+ +++ +.+. ..|..+.+..+++. +... ...
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~~-~~~~-~~~ 207 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEEL-KAL---GADE---VIDSSPEDLAQRVK-EATG-GAG 207 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHH-Hhc---CCCE---EecccchhHHHHHH-HHhc-CCC
Confidence 578999999999999999999999996 888888877665444 333 2221 12333333333322 2211 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.++.+.|.
T Consensus 208 ~d~vl~~~g~ 217 (323)
T cd05282 208 ARLALDAVGG 217 (323)
T ss_pred ceEEEECCCC
Confidence 9999988873
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.33 Score=48.44 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=57.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
...+.++|.|+ |.+|..+++.|.+.| ..|++++++++..+...+.. ..+.++.+|.++.+.++++- ..
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~-~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~------~~ 296 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEG-YSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEG------ID 296 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcC------Cc
Confidence 34678999998 899999999999999 59999999987766655432 34567889999987765432 23
Q ss_pred CccEEEec
Q 015844 164 PLDVLVCN 171 (399)
Q Consensus 164 ~id~lv~n 171 (399)
..|.+|..
T Consensus 297 ~a~~vi~~ 304 (453)
T PRK09496 297 EADAFIAL 304 (453)
T ss_pred cCCEEEEC
Confidence 57777643
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.52 Score=44.57 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=51.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.++.+++|.|+++++|.++++.....|+ .|+.+.++.++.+.+ ..+ +.+. + .|..+.+ ..+.+..... +
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-v--~~~~~~~-~~~~~~~~~~--~ 206 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFL-KSL---GCDR-P--INYKTED-LGEVLKKEYP--K 206 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHH-HHc---CCce-E--EeCCCcc-HHHHHHHhcC--C
Confidence 3578999999999999999998888996 788888887665544 333 2221 2 2333322 2223332222 3
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|.++++.|.
T Consensus 207 ~vd~v~~~~g~ 217 (329)
T cd08250 207 GVDVVYESVGG 217 (329)
T ss_pred CCeEEEECCcH
Confidence 69999988763
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.46 Score=45.90 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+++++|.|+ |+||..+++.+...|+ +|++++.+.++.....+++ |... + .|..+.+.+.+ ..+.
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~---Ga~~-v--i~~~~~~~~~~-------~~~~ 247 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL---GADS-F--LVSTDPEKMKA-------AIGT 247 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhC---CCcE-E--EcCCCHHHHHh-------hcCC
Confidence 5789999765 8999999998888997 7777776655444444443 3321 1 23333322222 1235
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 248 ~D~vid~~g~ 257 (360)
T PLN02586 248 MDYIIDTVSA 257 (360)
T ss_pred CCEEEECCCC
Confidence 8999998873
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.28 Score=47.19 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+.||++.|.|- |.||+++|+.|...|+ +|+.++|+.
T Consensus 156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~-~V~~~dr~~ 192 (347)
T PLN02928 156 TLFGKTVFILGY-GAIGIELAKRLRPFGV-KLLATRRSW 192 (347)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhhCCC-EEEEECCCC
Confidence 588999999986 8999999999999995 999998874
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.47 Score=46.45 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+.+.+|+|.|+ ||+|..+++.|+..|..++.+++.+.
T Consensus 39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 577888999986 69999999999999988999988764
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.54 Score=45.74 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|.|+ |+||..+++.....|+ +|++++++.++..+..+++ |... + .|..+.+.+.+ ..+.
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~l---Ga~~-~--i~~~~~~~v~~-------~~~~ 242 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRL---GADS-F--LVTTDSQKMKE-------AVGT 242 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhC---CCcE-E--EcCcCHHHHHH-------hhCC
Confidence 5789999886 8999999998888997 7888877655433333333 3321 1 23333322221 1236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 243 ~D~vid~~G~ 252 (375)
T PLN02178 243 MDFIIDTVSA 252 (375)
T ss_pred CcEEEECCCc
Confidence 9999998874
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.52 Score=43.83 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++.+++|.|+++++|.++++.+...|+ .|+.+.++.++.+.+ .++ +... ++ +..+......+. .... ...
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-~~--~~~~~~~~~~~~-~~~~-~~~ 205 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELA-RAA---GADH-VI--NYRDEDFVERVR-EITG-GRG 205 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHC---CCCE-EE--eCCchhHHHHHH-HHcC-CCC
Confidence 578999999999999999999889996 888888877665544 333 2221 22 222222222222 2211 235
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.++++.|.
T Consensus 206 ~d~vl~~~~~ 215 (320)
T cd05286 206 VDVVYDGVGK 215 (320)
T ss_pred eeEEEECCCc
Confidence 9999988763
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.96 Score=39.96 Aligned_cols=38 Identities=18% Similarity=0.430 Sum_probs=32.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+++||.+||.|| |.+|..-++.|++.|| +|.+++.+.
T Consensus 5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga-~VtVvsp~~ 42 (205)
T TIGR01470 5 ANLEGRAVLVVGG-GDVALRKARLLLKAGA-QLRVIAEEL 42 (205)
T ss_pred EEcCCCeEEEECc-CHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence 3688999999997 6889999999999997 888887754
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.56 Score=44.91 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+++++|+| .|++|..+++.+...|+..|+.++++.++.+.+ +++ |.. .++ |..+.. .+++.+.. . ..+
T Consensus 160 ~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~---Ga~-~~i--~~~~~~-~~~~~~~~-~-~~~ 228 (347)
T PRK10309 160 EGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALA-KSL---GAM-QTF--NSREMS-APQIQSVL-R-ELR 228 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc---CCc-eEe--cCcccC-HHHHHHHh-c-CCC
Confidence 578999997 599999999988889975578888887766543 333 222 222 322221 22222221 1 135
Q ss_pred cc-EEEecCcc
Q 015844 165 LD-VLVCNAAV 174 (399)
Q Consensus 165 id-~lv~nAg~ 174 (399)
+| ++|.++|.
T Consensus 229 ~d~~v~d~~G~ 239 (347)
T PRK10309 229 FDQLILETAGV 239 (347)
T ss_pred CCeEEEECCCC
Confidence 77 78888774
|
|
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.61 Score=44.50 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|+|+++++|.++++.....|+ +|+.+.++ .+ ....+++ +.. ...|..+.+..+.+ .. .+.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~-~~~~~~~---g~~---~~~~~~~~~~~~~l----~~-~~~ 227 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DA-IPLVKSL---GAD---DVIDYNNEDFEEEL----TE-RGK 227 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCc-ch-HHHHHHh---CCc---eEEECCChhHHHHH----Hh-cCC
Confidence 488999999999999999999889997 77777765 22 2233333 221 12344443333322 22 246
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.++++.|.
T Consensus 228 vd~vi~~~g~ 237 (350)
T cd08248 228 FDVILDTVGG 237 (350)
T ss_pred CCEEEECCCh
Confidence 9999988773
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.61 Score=45.30 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (399)
.+.+++|.| .+++|.++++.+...|+.+|++++++.++.+.+ +++ |.. .+ .+..+. +...+.+.+... +
T Consensus 190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~l---Ga~-~~--i~~~~~~~~~~~~v~~~~~--~ 259 (373)
T cd08299 190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KEL---GAT-EC--INPQDYKKPIQEVLTEMTD--G 259 (373)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCc-eE--ecccccchhHHHHHHHHhC--C
Confidence 478999996 589999999999899965799998887776555 334 221 11 222221 123333333322 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|.++++.|.
T Consensus 260 ~~d~vld~~g~ 270 (373)
T cd08299 260 GVDFSFEVIGR 270 (373)
T ss_pred CCeEEEECCCC
Confidence 69999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.29 Score=50.22 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+++.+|||.|+ ||||..+|+.|+..|..++++++.+.
T Consensus 335 kL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 335 RYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred HHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 467889999986 79999999999999999999998763
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.44 Score=47.98 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=50.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+.+++++|.|+ |++|.++|+.|.++|. .|.+.+++. .......+.++..|.. ++..+-.. .
T Consensus 13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~--~~~~~~~~-------------~ 75 (480)
T PRK01438 13 DWQGLRVVVAGL-GVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGAT--VRLGPGPT-------------L 75 (480)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCE--EEECCCcc-------------c
Confidence 456889999996 7899999999999995 888887553 3333334445444433 32222111 0
Q ss_pred CCCccEEEecCccc
Q 015844 162 GRPLDVLVCNAAVY 175 (399)
Q Consensus 162 ~g~id~lv~nAg~~ 175 (399)
....|.||...|+.
T Consensus 76 ~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 76 PEDTDLVVTSPGWR 89 (480)
T ss_pred cCCCCEEEECCCcC
Confidence 12589999999985
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.44 Score=44.45 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|+|+++++|.+++..+...|+ .|+.+.++.+..+.+ ..+ +... .+ +..+.+..+.+ ..... ...
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-~~--~~~~~~~~~~i-~~~~~-~~~ 208 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALA-RAL---GADH-VI--DYRDPDLRERV-KALTG-GRG 208 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHH-HHc---CCce-ee--ecCCccHHHHH-HHHcC-CCC
Confidence 578999999999999999999999996 888888887655544 222 2221 22 22222222222 22211 235
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.++++.|.
T Consensus 209 ~d~v~~~~g~ 218 (323)
T cd08241 209 VDVVYDPVGG 218 (323)
T ss_pred cEEEEECccH
Confidence 9999998774
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.5 Score=38.62 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=44.8
Q ss_pred EEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccC-----------CCcEEEEEecCCCHHHHHHHHHH
Q 015844 90 IITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMA-----------KENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 90 lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~-----------~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
...||+|-||.+++++|++.| +.|++.+|+. ++.+.+.+.+... ...+.++..= .+.+..++.+
T Consensus 4 ~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP---~~a~~~v~~~ 79 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP---FEAIPDVLAE 79 (211)
T ss_pred EEEeccChHHHHHHHHHHhCC-CeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc---HHHHHhHHHH
Confidence 345778999999999999999 5888886554 4444444444211 2334444332 3566667777
Q ss_pred HHHcCC
Q 015844 158 FRRSGR 163 (399)
Q Consensus 158 ~~~~~g 163 (399)
+.+.++
T Consensus 80 l~~~~~ 85 (211)
T COG2085 80 LRDALG 85 (211)
T ss_pred HHHHhC
Confidence 776554
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.49 Score=45.49 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC---hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++++|+|+ |++|...++.+...|+ +|++++|+ +++.+ ..+++ |.. . .|..+. .+.+ . ..
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~-~~~~~---Ga~--~--v~~~~~-~~~~-~----~~ 235 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGF-EVYVLNRRDPPDPKAD-IVEEL---GAT--Y--VNSSKT-PVAE-V----KL 235 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHH-HHHHc---CCE--E--ecCCcc-chhh-h----hh
Confidence 6789999985 9999999988888897 89988883 44433 33333 332 2 233332 2222 1 12
Q ss_pred CCCccEEEecCcc
Q 015844 162 GRPLDVLVCNAAV 174 (399)
Q Consensus 162 ~g~id~lv~nAg~ 174 (399)
.+.+|++|.+.|.
T Consensus 236 ~~~~d~vid~~g~ 248 (355)
T cd08230 236 VGEFDLIIEATGV 248 (355)
T ss_pred cCCCCEEEECcCC
Confidence 3479999999873
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.25 Score=40.79 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
+++||.++|.|.+.-+|+.++..|.++|+ .|.++.++.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t 62 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKT 62 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCC
Confidence 68899999999999999999999999996 888887653
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.7 Score=44.46 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC--HHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS--LDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~~~~ 162 (399)
.++++||+| ++++|.++++.+...|+.+|+++.+++++.+.+ +.+ +... ++ |..+ .......+.+... .
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~---g~~~-vi--~~~~~~~~~~~~~i~~~~~-~ 247 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELA-REF---GADA-TI--DIDELPDPQRRAIVRDITG-G 247 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCCe-EE--cCcccccHHHHHHHHHHhC-C
Confidence 688999997 599999999888888954788888877665433 333 2221 12 2222 1111122222221 2
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
..+|+++++.|.
T Consensus 248 ~~~d~vid~~g~ 259 (361)
T cd08231 248 RGADVVIEASGH 259 (361)
T ss_pred CCCcEEEECCCC
Confidence 369999998874
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.38 Score=45.82 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.++++||.|+++++|.++++.+...|+ .|+++.++.
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~ 181 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDR 181 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 578999999999999999999999996 777777664
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.57 Score=44.33 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=47.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
.+++++||+|++|..+++.....|+ +|+.+.++.++.+.+.+ + +... ++ |..+.+..+.+ .+... ...+|
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~-~---g~~~-~i--~~~~~~~~~~v-~~~~~-~~~~d 214 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK-I---GAEY-VL--NSSDPDFLEDL-KELIA-KLNAT 214 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-c---CCcE-EE--ECCCccHHHHH-HHHhC-CCCCc
Confidence 4444459999999999887778897 88888888766555432 3 3322 22 33333222222 22221 13599
Q ss_pred EEEecCc
Q 015844 167 VLVCNAA 173 (399)
Q Consensus 167 ~lv~nAg 173 (399)
++|++.|
T Consensus 215 ~vid~~g 221 (324)
T cd08291 215 IFFDAVG 221 (324)
T ss_pred EEEECCC
Confidence 9999877
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.61 Score=44.69 Aligned_cols=80 Identities=26% Similarity=0.287 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+++++|+|+ +++|..+++.+...|+.+|+++.++.++.+.+ .++ +... ..|..+.+..+.+. +... .+.
T Consensus 172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~---ga~~---~i~~~~~~~~~~l~-~~~~-~~~ 241 (351)
T cd08233 172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EEL---GATI---VLDPTEVDVVAEVR-KLTG-GGG 241 (351)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---CCCE---EECCCccCHHHHHH-HHhC-CCC
Confidence 5789999985 89999999999999965788888887765544 333 2221 23444433222222 2211 124
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|.+|.+.|.
T Consensus 242 ~d~vid~~g~ 251 (351)
T cd08233 242 VDVSFDCAGV 251 (351)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.58 Score=43.63 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=27.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
|+|.| .||+|.++++.|+..|..++.+++.+
T Consensus 2 VlVVG-aGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 2 ILVIG-AGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 67777 57999999999999998899998875
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.68 Score=44.76 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=51.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~ 162 (399)
..+.+++|.| .|++|..+++.+...|+.+|+.++++.++.+.+ +++ +.. .+ .|..+. ..+.+.+.+...
T Consensus 183 ~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~---ga~-~~--i~~~~~~~~~~~~~~~~~~-- 252 (365)
T cd08277 183 EPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEF---GAT-DF--INPKDSDKPVSEVIREMTG-- 252 (365)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---CCC-cE--eccccccchHHHHHHHHhC--
Confidence 3578999997 599999999888888975788888887765544 333 222 11 222221 122223333322
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
+.+|++|.+.|.
T Consensus 253 ~g~d~vid~~g~ 264 (365)
T cd08277 253 GGVDYSFECTGN 264 (365)
T ss_pred CCCCEEEECCCC
Confidence 469999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.52 Score=50.76 Aligned_cols=38 Identities=32% Similarity=0.348 Sum_probs=33.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
..+.+.+|+|.| .||+|..+++.|+..|..++.+++.+
T Consensus 328 ~kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 367888999998 57999999999999998889988775
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.49 Score=39.87 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=31.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+++|+.++|.|| |-+|...++.|++.|+ .|.+++..
T Consensus 9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga-~V~VIsp~ 45 (157)
T PRK06719 9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGA-FVTVVSPE 45 (157)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCc
Confidence 4789999999997 6899999999999997 88777543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.8 Score=38.44 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-------------CCCcEEEEEecCCCHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-------------AKENYTIMHLDLASLDSV 151 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dvs~~~~v 151 (399)
.+.++|+.|++.| + -+.+|+++| +.|+.++.++..++.+.++... .+.++.++.+|+.+.+.
T Consensus 34 ~~~rvLd~GCG~G--~-da~~LA~~G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~- 108 (213)
T TIGR03840 34 AGARVFVPLCGKS--L-DLAWLAEQG-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA- 108 (213)
T ss_pred CCCeEEEeCCCch--h-HHHHHHhCC-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc-
Confidence 4569999998654 3 478889999 6999999998877765433211 23468888999987542
Q ss_pred HHHHHHHHHcCCCccEEEecCcc
Q 015844 152 RQFVDTFRRSGRPLDVLVCNAAV 174 (399)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~nAg~ 174 (399)
+..+++|.++-.+..
T Consensus 109 --------~~~~~fD~i~D~~~~ 123 (213)
T TIGR03840 109 --------ADLGPVDAVYDRAAL 123 (213)
T ss_pred --------ccCCCcCEEEechhh
Confidence 112467887776544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.76 Score=42.87 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=44.5
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEec--CCCHHHHHHHHHHHHHcCCCcc
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD--LASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~D--vs~~~~v~~~~~~~~~~~g~id 166 (399)
++|.|+ ||+|..+|+.|+..|..++.+++.+.-....+.+ +..+-.-| +.. ..++.+.+.+.+.++.++
T Consensus 2 VLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~R-------Q~L~~~~D~~iGk-~Ka~aaa~~L~~iNP~v~ 72 (307)
T cd01486 2 CLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVR-------QSLFTFEDCKGGK-PKAEAAAERLKEIFPSID 72 (307)
T ss_pred EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEeccccCCc-------ccccccchhhcCc-cHHHHHHHHHHHHCCCcE
Confidence 677765 7999999999999999899999876433222211 12222223 332 234455555555555565
Q ss_pred EEEec
Q 015844 167 VLVCN 171 (399)
Q Consensus 167 ~lv~n 171 (399)
+-.++
T Consensus 73 v~~~~ 77 (307)
T cd01486 73 ATGIV 77 (307)
T ss_pred EEEee
Confidence 54444
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.73 Score=43.87 Aligned_cols=79 Identities=24% Similarity=0.262 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.++||.|+++++|.++++.+...|+ +|+++.+++++.+.+ +.+ +.+. ..+..+.+..+++.+ .. ..+.
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~---v~~~~~~~~~~~~~~-~~-~~~~ 234 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELA-KEL---GADA---FVDFKKSDDVEAVKE-LT-GGGG 234 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHc---CCcE---EEcCCCccHHHHHHH-Hh-cCCC
Confidence 478999999999999999999999996 899999987665544 333 2221 123333333333322 21 1236
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|.++++.+
T Consensus 235 vd~vl~~~~ 243 (341)
T cd08297 235 AHAVVVTAV 243 (341)
T ss_pred CCEEEEcCC
Confidence 999998665
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.51 Score=42.20 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=56.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|+++|=.|++|| -+++.||+.|+ .|..++-+++..+.+.......+..+.+. ...++++.+..
T Consensus 57 ~l~g~~vLDvGCGgG---~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~----------~~~~edl~~~~ 122 (243)
T COG2227 57 DLPGLRVLDVGCGGG---ILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYR----------QATVEDLASAG 122 (243)
T ss_pred CCCCCeEEEecCCcc---HhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccch----------hhhHHHHHhcC
Confidence 478999999999998 68999999996 99999999877776654443333332222 22344455555
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
+++|+|++.--+-
T Consensus 123 ~~FDvV~cmEVlE 135 (243)
T COG2227 123 GQFDVVTCMEVLE 135 (243)
T ss_pred CCccEEEEhhHHH
Confidence 7899999887654
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.33 Score=41.96 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=33.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
+|.|.|+ |-+|..+|..++..| +.|.+++++.+.++...+.+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i 42 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAG-YEVTLYDRSPEALERARKRI 42 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHH
Confidence 3667787 899999999999999 59999999988776665544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.31 Score=45.17 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
++.||.++|+|.+.-+|+.++..|.++|| +|.++.+.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~ 191 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSR 191 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC
Confidence 68999999999999999999999999997 88777654
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.62 E-value=1 Score=43.99 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
.+.+++|+|++++||.+++..+...|+ +++.+.++.++.+.+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~ 234 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYC 234 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 478999999999999999988888997 777788877665544
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.61 Score=46.36 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=34.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 124 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~ 124 (399)
.+.||+++|.|.+ .||+.+|+.|...|+ +|+++.+++...
T Consensus 251 ~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga-~ViV~e~dp~~a 290 (476)
T PTZ00075 251 MIAGKTVVVCGYG-DVGKGCAQALRGFGA-RVVVTEIDPICA 290 (476)
T ss_pred CcCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEeCCchhH
Confidence 6899999999975 699999999999997 899998876543
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.62 Score=48.99 Aligned_cols=80 Identities=30% Similarity=0.278 Sum_probs=52.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecCh------------------HHHHHHHHHhcc--CCCcEEEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDF------------------LKAERAAKSAGM--AKENYTIM 141 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~------------------~~~~~~~~~~~~--~~~~~~~~ 141 (399)
.+++++|+|.|. | +|..++..|+..|. -++++++.+. .|.+.+.+.+.. ...++..+
T Consensus 104 ~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 104 RLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 678899999999 4 99999999999994 6899988752 233333333332 23456666
Q ss_pred EecCCCHHHHHHHHHHHHHcCCCccEEEecC
Q 015844 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (399)
Q Consensus 142 ~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nA 172 (399)
...++ .+.++++++ .+|+||.|.
T Consensus 182 ~~~i~-~~n~~~~l~-------~~DlVvD~~ 204 (722)
T PRK07877 182 TDGLT-EDNVDAFLD-------GLDVVVEEC 204 (722)
T ss_pred eccCC-HHHHHHHhc-------CCCEEEECC
Confidence 66665 445554443 356555543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=92.58 E-value=3.2 Score=35.53 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+++++|=.|++.|. ++..+++.|. +|+.++.++...+.+.+.+...+.++.++.+|+.+.. .+.
T Consensus 19 ~~~~vLdlG~G~G~---~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~------------~~~ 82 (179)
T TIGR00537 19 KPDDVLEIGAGTGL---VAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV------------RGK 82 (179)
T ss_pred CCCeEEEeCCChhH---HHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc------------CCc
Confidence 45678888876653 4556667785 8999999988777666666555556788888875421 137
Q ss_pred ccEEEecCccc
Q 015844 165 LDVLVCNAAVY 175 (399)
Q Consensus 165 id~lv~nAg~~ 175 (399)
+|.++.|.-..
T Consensus 83 fD~Vi~n~p~~ 93 (179)
T TIGR00537 83 FDVILFNPPYL 93 (179)
T ss_pred ccEEEECCCCC
Confidence 99999886553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.6 Score=43.34 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=66.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHc---CC---cEEEEeec--ChHHHHHHHHHhccCC----CcEEEEEecCCCHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAET---GK---WHIIMACR--DFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~---Ga---~~vv~~~r--~~~~~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~ 155 (399)
.|+||||+|-||.++.-++++- |. -.+++++. +.+.++..+-++.... ..+.+. .| +.+ .
T Consensus 125 ~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~--~~e----a- 196 (452)
T cd05295 125 QVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD--LDV----A- 196 (452)
T ss_pred EEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC--CHH----H-
Confidence 6999999999999999999862 31 13677777 4556655555443221 122222 11 211 1
Q ss_pred HHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 156 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
+...|++|..||.... + .++. ...++.|.. +++...+.+.+...+..+|+.+.|
T Consensus 197 ------~~daDvvIitag~prk--~--G~~R---~DLL~~N~~----Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 197 ------FKDAHVIVLLDDFLIK--E--GEDL---EGCIRSRVA----ICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred ------hCCCCEEEECCCCCCC--c--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCCeEEEEeC
Confidence 2369999999997422 1 2233 344556654 455555555555432346766664
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.95 Score=44.33 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
.+.+++|+|+++++|.++++.+...|+ +++++.++.++.+.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~ 230 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYC 230 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 468999999999999999988888997 777777776554433
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.7 Score=40.89 Aligned_cols=110 Identities=20% Similarity=0.143 Sum_probs=67.0
Q ss_pred EcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 92 TGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 92 TG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
.| .|.+|..+|..|+..+ +..+++++.+.+.++..+..+... ..++.+. . .+.+. +...|
T Consensus 2 IG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~~~~-----------~~daD 66 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GDYSD-----------CKDAD 66 (299)
T ss_pred CC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CCHHH-----------HCCCC
Confidence 45 4899999999998877 357999999877666555555332 1222222 1 23221 23689
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
++|..||.... + .++. ...+..|.. +++.+.+.+.+.. +.+.||++|-..
T Consensus 67 ivVitag~~rk--~--g~~R---~dll~~N~~----i~~~~~~~i~~~~-p~~~vivvsNP~ 116 (299)
T TIGR01771 67 LVVITAGAPQK--P--GETR---LELVGRNVR----IMKSIVPEVVKSG-FDGIFLVATNPV 116 (299)
T ss_pred EEEECCCCCCC--C--CCCH---HHHHHHHHH----HHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 99999998422 1 2333 334555544 4555555555543 467888887543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.57 Score=44.53 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=35.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.++.+|++||.|+ |-+|..+++.|.++|+.+|+++.|+.
T Consensus 170 ~~l~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 170 QKSKKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CCccCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3688999999998 89999999999999987899999986
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.37 Score=41.54 Aligned_cols=42 Identities=31% Similarity=0.307 Sum_probs=35.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~ 125 (399)
..+.|+++.|.|. |.||+++|+.|...|+ +|+.++|......
T Consensus 32 ~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 32 RELRGKTVGIIGY-GRIGRAVARRLKAFGM-RVIGYDRSPKPEE 73 (178)
T ss_dssp S-STTSEEEEEST-SHHHHHHHHHHHHTT--EEEEEESSCHHHH
T ss_pred cccCCCEEEEEEE-cCCcCeEeeeeecCCc-eeEEecccCChhh
Confidence 3688999999975 8999999999999996 9999999876544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 399 | ||||
| 3rd5_A | 291 | Crystal Structure Of A Putative Uncharacterized Pro | 8e-17 | ||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 3e-07 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 2e-06 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 2e-06 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 3e-06 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 4e-06 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 4e-06 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 9e-06 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 3e-05 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 3e-05 | ||
| 3tn7_A | 257 | Crystal Structure Of Short-Chain Alcohol Dehydrogen | 7e-05 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 1e-04 | ||
| 3u9l_A | 324 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 1e-04 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 2e-04 | ||
| 3awd_A | 260 | Crystal Structure Of Gox2181 Length = 260 | 3e-04 | ||
| 2ztm_A | 260 | T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L | 5e-04 | ||
| 1wmb_A | 260 | Crystal Structure Of Nad Dependent D-3-Hydroxybutyl | 5e-04 | ||
| 2ztu_A | 260 | T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C | 5e-04 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 6e-04 | ||
| 1xkq_A | 280 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 8e-04 |
| >pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291 | Back alignment and structure |
|
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|3U9L|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From Sinorhizobium Meliloti Length = 324 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|3AWD|A Chain A, Crystal Structure Of Gox2181 Length = 260 | Back alignment and structure |
|
| >pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
| >pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 6e-60
Identities = 94/347 (27%), Positives = 130/347 (37%), Gaps = 74/347 (21%)
Query: 65 TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 124
+M + A D+ S + +V+ITGA+SGLG TA+ LA G +IMA RD K
Sbjct: 2 SMTGWTAA-DLPSFAQR------TVVITGANSGLGAVTARELARRG-ATVIMAVRDTRKG 53
Query: 125 ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
E AA++ + LDL L SVR+F D DVL+ NA +
Sbjct: 54 EAAARTMA---GQVEVRELDLQDLSSVRRFADGVSG----ADVLINNAGIMAV---PYAL 103
Query: 185 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244
T +GFE +GTNHLGHF L+ LLL L R++ V S+
Sbjct: 104 TVDGFESQIGTNHLGHFALTNLLLPRLT------DRVVTVSSMA-------------HWP 144
Query: 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASL 303
G + L LN S + AY SK+ N+L E RR + + +
Sbjct: 145 GRIN-----LEDLNWRS----RRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAA 195
Query: 304 YPGCIATTGLFREHIP------LFRLLFPPFQKYITKG-----YV-SEDEAGKRLAQVVS 351
+PG + T L L G Y S+D G
Sbjct: 196 HPG-YSHTNLQG-ASGRKLGDALMSAATRVVATDADFGARQTLYAASQDLPGDSFVGP-- 251
Query: 352 DPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 398
Y + S+ A D A +W +SE+L
Sbjct: 252 ------RFGYLGRTQ-----PVGRSRRAKDAGMAAALWALSEQLTKT 287
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 9e-49
Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 14/231 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG + G+GLA + L +++ RD + + A + + LD+ L
Sbjct: 7 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+R D R+ LDVLV NA + +PT E+++ TN G + LL
Sbjct: 67 QSIRALRDFLRKEYGGLDVLVNNAGIAFKV-ADPTPFHIQAEVTMKTNFFGTRDVCTELL 125
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMID---- 264
+K P R++ V SI + + + L GL + + D
Sbjct: 126 PLIK----PQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 181
Query: 265 --GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIAT 310
+ + AY +K+ + + R+ E+ I + PG + T
Sbjct: 182 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRT 232
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 8e-34
Identities = 60/338 (17%), Positives = 105/338 (31%), Gaps = 74/338 (21%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
M P ++ ++ ++TG + G+G K L+ G +++ CRD K
Sbjct: 1 MPETCP----NTVTKRRC-----AVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGH 50
Query: 126 RAAKS-AGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 183
A + EN LD+ + ++ D + LD+LV NA V +
Sbjct: 51 EAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADR 110
Query: 184 F-----------------------------TAEGFELSVGTNHLGHFLLSRLLLDDLKQS 214
F T E E + N+ G ++ +L+ L+ S
Sbjct: 111 FKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLS 170
Query: 215 DYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGG---------LNGLNSSSMIDG 265
D P R++ V S TG+ N LGD L + +
Sbjct: 171 DSP--RIVNVSSSTGSL-KYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETN 227
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325
G AY SK C + + + PG + T +
Sbjct: 228 GWPSFGAAYTTSKACLNAYTRVLANKI---PKFQVNCVCPGLVK-TEMNYGIGNY----- 278
Query: 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363
+ +E + + ++ P SG ++
Sbjct: 279 ------------TAEEGAEHVVRIALFPDDGPSGFFYD 304
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-28
Identities = 54/297 (18%), Positives = 88/297 (29%), Gaps = 76/297 (25%)
Query: 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
SV++TGA+ G+GL + L + HII RD KA ++ L +
Sbjct: 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD---SRVHVLPLTVT 61
Query: 147 SLDSVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
S+ FV L +L+ NA V L + N LL+
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 205 RLLLDDLKQSDYPS---------KRLIIV----GSITGNTNTLAGNVPPKANLGDLRGFA 251
+ LL LK + +I + GSIT NT
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT-------------------- 161
Query: 252 GGLNGLNSSSMIDGGDFDGAKAYKDSKV-CNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
G AY+ SK NM ++ + + PG + T
Sbjct: 162 ------------SGSAQFPVLAYRMSKAAINMFGRT-LAVDL-KDDNVLVVNFCPGWVQT 207
Query: 311 --TGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365
G ++ +++ L + + +G ++ N
Sbjct: 208 NLGG--------------------KNAALTVEQSTAELISSFNKLDNSHNGRFFMRN 244
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 8e-26
Identities = 55/287 (19%), Positives = 105/287 (36%), Gaps = 57/287 (19%)
Query: 88 SVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
S++ITG + GLGL KAL + H+ CR+ +A+ + N I+ +DL
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDL 81
Query: 146 ASLDSVRQFVDTFRRS--GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ D+ + V + L+VL NA + +A+ ++ ++ TN + +L
Sbjct: 82 RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 141
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSM- 262
++ L LK++ ++ + + N+ SS +
Sbjct: 142 AKACLPLLKKAAKANE-----------SQPMGVGRAAIINM--------------SSILG 176
Query: 263 -IDGGDFDGAKAYKDSKVC-NMLTMQEFHRRFHEETGIAFASLYPGCIAT--TGLFREHI 318
I G G AY+ SK N T I SL+PG + T G
Sbjct: 177 SIQGNTDGGMYAYRTSKSALNAATKS-LSVDL-YPQRIMCVSLHPGWVKTDMGG------ 228
Query: 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365
+ + + ++ Q +S ++G + +++
Sbjct: 229 --------------SSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYD 261
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-18
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA++G G + + G +I R + ER + +N I LD+ +
Sbjct: 3 VLVTGATAGFGECITRRFIQQG-HKVIATGR---RQERLQELKDELGDNLYIAQLDVRNR 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
++ + + + +D+LV NA + L + E +E + TN+ G ++R +L
Sbjct: 59 AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + + +I +GS G+ GNV
Sbjct: 119 PGMVERN--HGHIINIGSTAGSWPYAGGNV 146
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 6e-18
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TGA SGLG A L E G + M R + + ++ G + DLA
Sbjct: 6 IIVTGAGSGLGRALTIGLVERG-HQVSMMGRRYQRLQQQELLLG---NAVIGIVADLAHH 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ V G ++++ A +TAE + +N + L+++ +
Sbjct: 62 EDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVG-VYTAEQIRRVMESNLVSTILVAQQTV 120
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+ + L V S
Sbjct: 121 RLIGER---GGVLANVLSSAA 138
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 1e-17
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACR--DFLKAERAAKSAGMAKENYTIMHLD 144
V+ITGAS+G+G ATA E +I+A R + L+ + + LD
Sbjct: 36 VLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLD 95
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ + ++ F++ + + +D+LV NA L + + E + TN ++
Sbjct: 96 ITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINIT 155
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ +L + + S ++ +GSI G G++
Sbjct: 156 QAVLPIFQAKN--SGDIVNLGSIAGRDAYPTGSI 187
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-17
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA SG+G A A ALA G + + +A R + A G ++ + D+
Sbjct: 31 AIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQETAAEIG---DDALCVPTDVTDP 86
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
DSVR T + GR +DVL NA P T ++ V TN G FL ++
Sbjct: 87 DSVRALFTATVEKFGR-VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEA 145
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
+K + R+I GSI+
Sbjct: 146 FRVMKAQEPRGGRIINNGSISA 167
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 4e-17
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 76 SSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKS 130
S + + ++ ITGA+SG G A A+ AE G W +++ R L E +AK+
Sbjct: 11 SGLVPRGSHMSSTLFITGATSGFGEACARRFAEAG-WSLVLTGRREERLQALAGELSAKT 69
Query: 131 AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 190
+ LD+ ++ VD L L+ NA + L T + + ++
Sbjct: 70 RVLPLT------LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWD 123
Query: 191 LSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
V TN G +RLLL L + ++ +GS+ G +V
Sbjct: 124 TMVDTNIKGLLYSTRLLLPRLIAHGAGA-SIVNLGSVAGKWPYPGSHV 170
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 6e-17
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 10/151 (6%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHL--D 144
++TGAS G G A A LA ++++ R + + G + + ++ D
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 145 LASLDSVRQFVDTFRRSGRP----LDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHL 198
L + V++ + R RP +L+ NAA +K N
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLT 128
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
L+ L+ + S SK ++ + S+
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 9e-17
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 20/160 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKSAGMAKENYTIMHL 143
+ITGAS G+G A A+ALA G + + + R + + E + HL
Sbjct: 5 AVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHELMQEQGVEV----FYHHL 59
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D++ +SV +F +DV+V NA + + + E F + N LG +
Sbjct: 60 DVSKAESVEEFSKKVLERFGDVDVVVANAGL-GYFKRLEELSEEEFHEMIEVNLLGVWRT 118
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+ LD LK+ + L +V T+ ++ + P
Sbjct: 119 LKAFLDSLKR----TGGLALV-----TTSDVSARLIPYGG 149
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-16
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
KG+V+ITGAS G+G ATA+ L G + + + RD + + A A +
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRLQALAAELEGA----LPLP 56
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D+ + V + L LV NA V T E + L + TN G FL
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALVNNAGV-GVMKPVHELTLEEWRLVLDTNLTGAFL 115
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
R + L + ++ VGS+ G G
Sbjct: 116 GIRHAVPALLRRG--GGTIVNVGSLAGKNPFKGGAA 149
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 2e-16
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
+ T + QGK + ++TG +G+G A+AL+ G + +++ R +
Sbjct: 13 LGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLD 71
Query: 126 RAAKSAGMAK-ENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT 183
AA G + D+ D V R LD+LV NA +P
Sbjct: 72 AAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR-LDLLVNNAGSNVPPVPLEE 130
Query: 184 FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
T E + V N G FL ++ +K R+I GSI+
Sbjct: 131 VTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISA 176
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-16
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
MA+ + + KK V+ITGASSG+G A A+ +E G +++ R
Sbjct: 1 MASMTGGQQMGRGSMKKL-----VVITGASSGIGEAIARRFSEEG-HPLLLLAR------ 48
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT 185
R + + N +D+ + + + P D +V NA + + + T
Sbjct: 49 RVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGM-MLLGQIDTQE 107
Query: 186 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
A ++ N LG + +L +K + +I + SI G
Sbjct: 108 ANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGKKTFPDHAA 158
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-16
Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 36/191 (18%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++I+G ++G+G AT K L G I+ AE A DL++
Sbjct: 4 IVISGCATGIGAATRKVLEAAG-HQIVGIDIR--DAEVIA---------------DLSTA 45
Query: 149 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ +Q + D + + +D LV A + T V N+ G L
Sbjct: 46 EGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV--------LGNVVSVNYFGATELMDAF 97
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
L LK+ P+ V +++A G + + G+
Sbjct: 98 LPALKKGHQPA----AV-----VISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGE 148
Query: 268 FDGAKAYKDSK 278
G AY SK
Sbjct: 149 QGGNLAYAGSK 159
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 3e-16
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 4/152 (2%)
Query: 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN 137
P+ +K++ V+ITGA G+G TA A+ +++ + E A
Sbjct: 23 PKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAK 81
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+D ++ + + + + +LV NA V + T+ E + N
Sbjct: 82 VHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV-VYTSDLFATQDPQIEKTFEVNV 140
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
L HF ++ L + +++ ++ V S G
Sbjct: 141 LAHFWTTKAFLPAMTKNN--HGHIVTVASAAG 170
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 5e-16
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G+ K L+ + E A A E + D+
Sbjct: 8 AVVTGATGGMGIEIVKDLSRDH-IVYALGRN----PEHLAALA--EIEGVEPIESDIVKE 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
VD + +D LV AAV T E + + + N + LSR LL
Sbjct: 61 VLEEGGVDKLKNLDH-VDTLVHAAAVARDTTIE-AGSVAEWHAHLDLNVIVPAELSRQLL 118
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L+ + S +I + S G
Sbjct: 119 PALRAA---SGCVIYINSGAG 136
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-16
Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 5/147 (3%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
T R +V + GA +G AK A G + + R+ K A
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAGGRIVARS 62
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
LD + D V F++ PL+V + N + T T F F+
Sbjct: 63 LDARNEDEVTAFLNAADAHA-PLEVTIFNVGANVNFPILET-TDRVFRKVWEMACWAGFV 120
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
R + ++ G+
Sbjct: 121 SGRESARLMLAHGQG--KIFFTGATAS 145
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 8e-16
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 22/159 (13%)
Query: 76 SSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130
+ +GS +++ G S LG K W+ I DF + A S
Sbjct: 7 HHHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKS-WNTISI--DFRENPNADHS 63
Query: 131 AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 190
+ + + ++ ++ +D VC A + + +
Sbjct: 64 ----------FTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVK 113
Query: 191 LSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ N F + + L Q ++ G+
Sbjct: 114 GMIDMNLYSAFASAHIGAKLLNQGG----LFVLTGASAA 148
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 9e-16
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 4/150 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ITGAS G+G A+ L G I++ R + E A A LD+
Sbjct: 7 ILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDR 65
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
SV F + +DVLV NA V +P + + +E + N G +L
Sbjct: 66 HSVAAFAQAAVDTWGRIDVLVNNAGV-MPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVL 124
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
++ S ++I +GSI + V
Sbjct: 125 PIMEAQR--SGQIINIGSIGALSVVPTAAV 152
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 9/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+++TG S G+G + L K ++ R ++ + G + + + D+
Sbjct: 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG---DRFFYVVGDITE 61
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
++Q V+ + G+ +D LV NA V P ++ N L +
Sbjct: 62 DSVLKQLVNAAVKGHGK-IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGI 120
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNT 231
L +LK++ + ++ V S N
Sbjct: 121 ALPELKKT---NGNVVFVSSDACNM 142
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 1e-15
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA G+G T KAL +G ++ R AK + + +DL D
Sbjct: 11 LVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIE----PVCVDLGDWD 65
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ + + +D+LV NAA+ + T E F+ S N F +S+
Sbjct: 66 ATEKALGGIGP----VDLLVNNAALVIMQPFL-EVTKEAFDRSFSVNLRSVFQVSQ 116
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLAS 147
VI+TGAS G+G A LA+ G H+++ R ++ + + + +
Sbjct: 31 VIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 89
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ QFV + G LD+L+ N S+ N L + +L+
Sbjct: 90 MTFAEQFVAQAGKLMGG-LDMLILNHITNTSLNLFHDDI--HHVRKSMEVNFLSYVVLTV 146
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
L LKQS + +++V S+ G
Sbjct: 147 AALPMLKQS---NGSIVVVSSLAG 167
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+ G LG A + + G + ++ D ++A + + + +
Sbjct: 6 VIVYGGKGALGSAILEFFKKNG-YTVLNI--DLSANDQADSNILVD------GNKNWTEQ 56
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ G +D + C A + + + +L + + + ++L
Sbjct: 57 EQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLAT 116
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
LK L + G+
Sbjct: 117 THLKPGG----LLQLTGAAAA 133
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 74.8 bits (185), Expect = 1e-15
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA G+G T +AL TG ++ R + + + + +DL
Sbjct: 10 VLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECPGIE----PVCVDLGDW 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ + + + +D+LV NAAV L T E F+ S N +S+
Sbjct: 65 EATERALGSVGP----VDLLVNNAAVALLQPFL-EVTKEAFDRSFEVNLRAVIQVSQ 116
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-15
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++ G LG +A W + D ++ E A+ S + +
Sbjct: 10 VLVYGGRGALGSRCVQAFRARN-WWVASI--DVVENEEASASVIVK-----MTDSFTEQA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V V + +D ++C A + + + +L + + S L
Sbjct: 62 DQVTAEVGKLLGDQK-VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 120
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
LK+ L + G+
Sbjct: 121 KHLKEGG----LLTLAGAKAA 137
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-15
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 145
+++TGA+ G+G A A+A A G +++ R + KSAG + ++L+
Sbjct: 17 ILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLEN 75
Query: 146 ASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
A+ R+ GR LD L+ NA++ P E F + N F+L+
Sbjct: 76 ATAQQYRELAARVEHEFGR-LDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLT 134
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
R LL LK+S+ S + S G
Sbjct: 135 RALLPLLKRSEDAS--IAFTSSSVG 157
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 86 KGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAER---AAKSAGMAKENYTI 140
+ V+ITG SSG+GL A LA + + RD R AA++ +
Sbjct: 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLET 61
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEG---FELSVGTNH 197
+ LD+ SV + GR +DVLVCNA + L E + N
Sbjct: 62 LQLDVRDSKSVAAARERV-TEGR-VDVLVCNAGLGLLGPLEALGEDAVASVLD----VNV 115
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+G + + L D+K+ S R+++ GS+ G
Sbjct: 116 VGTVRMLQAFLPDMKRRG--SGRVLVTGSVGG 145
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-15
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 146
++TGAS G+G A A+AL + G ++ R ++ A + DL+
Sbjct: 35 ALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 93
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + + R +D+ + NA + + + G++ N L + +R
Sbjct: 94 NEEDILSMFSAIRSQHSGVDICINNAGL-ARPDTLLSGSTSGWKDMFNVNVLALSICTRE 152
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245
+K+ + +I + S++G+ V P +
Sbjct: 153 AYQSMKERNVDDGHIININSMSGHR------VLPLSVTH 185
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
++TG S G+G A+ L E G + + RD A + G + DL
Sbjct: 32 ALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDC----QAIPADL 86
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLL 203
+S R+ LD+LV NA + ++ G+E + N F
Sbjct: 87 SSEAGARRLAQALGELSARLDILVNNAGT---SWGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 204 SRLLLDDLKQSDYPSK--RLIIVGSITG 229
+ LL L++S R+I +GS+ G
Sbjct: 144 IQQLLPLLRRSASAENPARVINIGSVAG 171
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
IITG+S+G+G ATA A G + + R + E + +AG++++N + D+
Sbjct: 9 AIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 67
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHF 201
+ + + T + G+ LD+LV NA +P ++ T + E ++ ++ N
Sbjct: 68 TTDAGQDEILSTTLGKFGK-LDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI 126
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITG 229
L++ + L + ++ + SI
Sbjct: 127 ALTKKAVPHLSST---KGEIVNISSIAS 151
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 9e-15
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+I+G LG A+ AE G +++A R + E AK + D+
Sbjct: 14 VVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDD 72
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V VD T + GR +DV++ NA T E ++ G L +
Sbjct: 73 AQVAHLVDETMKAYGR-VDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGF 131
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L++S ++ V S+
Sbjct: 132 TPALEES---KGAVVNVNSMVV 150
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 9e-15
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 12/163 (7%)
Query: 68 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127
S + QG TL ++ITGAS +GL A L E G +I++ R +
Sbjct: 9 HHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRTEHASVTE 67
Query: 128 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
+ AG ++ D + + F+D + L +V NA+ +L P A+
Sbjct: 68 LRQAGAV-----ALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAET--PGEEAD 120
Query: 188 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLII-VGSITG 229
F + L +L++ L S+ I+ +
Sbjct: 121 NFTRMFSVHMLAPYLINLHCEPLLTASEVAD---IVHISDDVT 160
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 9e-15
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 145
++TG SG+G A L G +++ R+ K A ++ G D+
Sbjct: 14 YLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDI 72
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ D + VD GR L +V A +E + +V N G +
Sbjct: 73 TNEDETARAVDAVTAWHGR-LHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVL 131
Query: 205 R 205
+
Sbjct: 132 K 132
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 1e-14
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+TGA SG+GL +A A +G +I+ R+ +RAA+ G A + D+ +
Sbjct: 15 AVTGAGSGIGLEICRAFAASG-ARLILIDREAAALDRAAQELGAAV--AARIVADVTDAE 71
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ + +LV +A + + + N G F SR
Sbjct: 72 AMTAAAAEAEAVAP-VSILVNSAGIARLHDAL-ETDDATWRQVMAVNVDGMFWASR 125
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGA+SG+GLA AK G + + R + A G + D A+L
Sbjct: 32 AVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG---GGAVGIQADSANL 87
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ + + + +DVL NA T E ++ + N G + L
Sbjct: 88 AELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLG-EVTEEQYDDTFDRNVKGVLFTVQKAL 146
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L + +++ GS G
Sbjct: 147 PLLARGS----SVVLTGSTAG 163
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 1e-14
Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+ G + G+GLAT + L E G +++ R+ R + G + D+A L
Sbjct: 11 AIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG---PRVHALRSDIADL 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ + ++ +D+L NA V + + ++ N G F + L
Sbjct: 67 NEIAVLGAAAGQTLGAIDLLHINAGVSELEPFD-QVSEASYDRQFAVNTKGAFFTVQRLT 125
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+++ ++ S+
Sbjct: 126 PLIREGG----SIVFTSSVAD 142
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGASSG+G ATA+ALA G + +A R K A ++ LD+A
Sbjct: 10 ALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADR 68
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V V + + LD+LV NA + + + + TN LG ++R L
Sbjct: 69 QGVDAAVASTVEALGGLDILVNNAGI-MLLGPVEDADTTDWTRMIDTNLLGLMYMTRAAL 127
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
L +S ++ + SI G N V
Sbjct: 128 PHLLRS---KGTVVQMSSIAGRVNVRNAAV 154
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++ GAS LG A + L + +I A R + + +D+ ++
Sbjct: 6 ILLIGASGTLGSAVKERLEKKA--EVITAGR------HSGD-----------VTVDITNI 46
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
DS+++ + + +D +V + T E +++ + G L L +
Sbjct: 47 DSIKKMYEQVGK----VDAIVSATGSATFSPLT-ELTPEKNAVTISSKLGGQINLVLLGI 101
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
D L GS T T + P
Sbjct: 102 DSLNDK----------GSFT-LTTGIMMEDP 121
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-14
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
++T SSGLG A+A LA G +++ R+ K E AA + + D+
Sbjct: 10 AVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIR 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + + R G D+LV + P E ++ S + R
Sbjct: 69 EPGDIDRLFEKARDLGGA-DILVYSTGGPRPGRFM-ELGVEDWDESYRLLARSAVWVGRR 126
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+ + + + R++ +GS+T
Sbjct: 127 AAEQMVEKGWG--RMVYIGSVTL 147
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-14
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
+ITG+SSG+GLA A+ A+ G HI++ R + AA+S + +D+A+
Sbjct: 10 AVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT 68
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ V V++ R S D+LV NA E ++ + L+R L
Sbjct: 69 PEGVDAVVESVRSSFGGADILVNNAGTGSNETIM-EAADEKWQFYWELLVMAAVRLARGL 127
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
+ ++ +I SI
Sbjct: 128 VPGMRARGGG--AIIHNASICA 147
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 5e-14
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGA SG G AK A+ G +++ RD AER A G + + D++
Sbjct: 12 ALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIG---DAALAVAADISKE 67
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V V+ + G+ +D+LV NA + E F+ VG N G +L++ L
Sbjct: 68 ADVDAAVEAALSKFGK-VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKL 126
Query: 208 LDDLKQSDYPSKRLIIV--GSITG 229
+ K++ + +I+ S
Sbjct: 127 IPHFKENGAKGQECVILNVASTGA 150
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 5e-14
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 147
+ITGA+ G+G A+A A G ++++ RD + + A ++ G + + +DLA
Sbjct: 23 ALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE 81
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D+ + + LDVLV NA + P + F+ ++ N LL+
Sbjct: 82 PDAPAELARRAAEAFGGLDVLVNNAGISHPQPVV-DTDPQLFDATIAVNLRAPALLAS 138
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 7e-14
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG + +GLA ALAE G +I+A D A +A + M + + + +D+ +
Sbjct: 16 AIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNT 74
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+SV+ V + GR +D+LV A + + K T + V N G F + +
Sbjct: 75 ESVQNAVRSVHEQEGR-VDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAV 133
Query: 208 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
L+Q ++ +GS++G L N P
Sbjct: 134 GRIMLEQK---QGVIVAIGSMSG----LIVNRPQ 160
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 1e-13
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG++ GLG A A+ LA G +I+ + + + + D+
Sbjct: 13 LVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDEL 71
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
++ G +D+L+ NA + E ++ + TN FL+SR
Sbjct: 72 AIEAAFSKLDAEGIHVDILINNAGIQYRKPMV-ELELENWQKVIDTNLTSAFLVSRSAAK 130
Query: 210 DLKQSDYPSKRLII-VGSITG 229
+ + K II +GS+T
Sbjct: 131 RMIARNSGGK--IINIGSLTS 149
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG S G+G A + LA G + R+ + + + N DL S
Sbjct: 25 LVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 83
Query: 150 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 205
+ + T G+ L++LV NA V + FT + + + +GTN + LS+
Sbjct: 84 ERDKLMQTVAHVFDGK-LNILVNNAGV---VIHKEAKDFTEKDYNIIMGTNFEAAYHLSQ 139
Query: 206 LLLDDLKQSDYPSKRLII-VGSITG 229
+ LK S + +I + SI G
Sbjct: 140 IAYPLLKASQNGN---VIFLSSIAG 161
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 1e-13
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 145
IITGAS G+G A LA G + +++ R E+ + + ++ LD+
Sbjct: 10 AIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDI 68
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ + +D+LV AA+++ + + F + N + + + +
Sbjct: 69 TDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPV--DNFRKIMEINVIAQYGILK 126
Query: 206 LLLDD-LKQSDYPSKRLIIVGSITG 229
+ + Q + + V S
Sbjct: 127 TVTEIMKVQK---NGYIFNVASRAA 148
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 66 MATASPAVDVSSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRD 120
M T + SP K L S ITG +GLG L+ G ++A R
Sbjct: 1 MNTEALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRK 59
Query: 121 FLKAERAAKS-AGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPT 178
+ A+ + + D+ D V+ V + +G ++++ NAA +
Sbjct: 60 MDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH-PNIVINNAAGNFIS 118
Query: 179 AKEPTFTAEGFELSVGTNHLGHFLLSR 205
E + ++ G ++
Sbjct: 119 PTE-RLSPNAWKTITDIVLNGTAFVTL 144
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-13
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 79 QGKKTLRKGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMA 134
Q K+ L +I +TGAS G+G A A G +I+ R+ K + A
Sbjct: 4 QPKQDLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGR 62
Query: 135 KENYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 193
+ + I+ L + ++ +Q R LD ++ NA + + ++ +
Sbjct: 63 QPQWFILDLLTCTSENCQQLAQRIAVNYPR-LDGVLHNAGLLGDVCPMSEQNPQVWQDVM 121
Query: 194 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N F+L++ LL L +SD S L+ S G
Sbjct: 122 QVNVNATFMLTQALLPLLLKSDAGS--LVFTSSSVG 155
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-13
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-----FLKAERAAKSAGMAKENYTIMHL 143
++ITGASSG G TA+ALA G + + RD E A A + + L
Sbjct: 8 ILITGASSGFGRLTAEALAGAG-HRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLEL 66
Query: 144 DLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D+ S SV + +D GR +DVL+ NA + E FT E F N L
Sbjct: 67 DVQSQVSVDRAIDQIIGEDGR-IDVLIHNAGHMVFGPAE-AFTPEQFAELYDINVLSTQR 124
Query: 203 LSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAG 236
++R L + +Q LI + S + T
Sbjct: 125 VNRAALPHMRRQK---HGLLIWISSSSSAGGTPPY 156
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 3e-13
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 13/151 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ITGASSGLG AK G + R + + N DLAS
Sbjct: 4 IVITGASSGLGAELAKLYDAEG-KATYLTGRS---ESKLSTVTNCLSNNVGYRARDLASH 59
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V Q + +V ++A E + + N + R L+
Sbjct: 60 QEVEQLFEQLDSI---PSTVV-HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELV 115
Query: 209 DDLKQSDYPSKRLII-VGSITGNTNTLAGNV 238
K ++ + S +
Sbjct: 116 KRYKD----QPVNVVMIMSTAAQQPKAQEST 142
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 11/174 (6%)
Query: 57 RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
G + AQT S +S G+ ++TG +SG+GLATA A G +++
Sbjct: 8 HMGTLEAQTQGPGSMDGFLSGFDGRA------AVVTGGASGIGLATATEFARRG-ARLVL 60
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVY 175
+ D E+A + + D+ LD + + D FR G +DV+ NA +
Sbjct: 61 SDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG-VDVVFSNAGI- 118
Query: 176 LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ + + + + G L L + + S G
Sbjct: 119 VVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGG-HIAFTASFAG 171
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 10/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 146
++TG SSG+GLAT + L E G + RD + A + D+
Sbjct: 11 AVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVL 69
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
VR F + R G +LV NA + T E + + R
Sbjct: 70 DALQVRAFAEACERTLGC-ASILVNNAGQGRVSTFA-ETTDEAWSEELQLKFFSVIHPVR 127
Query: 206 LLLDDLKQSDYPSKRLII-VGSITG 229
L L+ + I+ V S+
Sbjct: 128 AFLPQLESRADAA---IVCVNSLLA 149
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 7e-13
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 17/141 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG S G+G A + L + H ++ + EN + DL
Sbjct: 7 YLVTGGSKGIGKAVVELLLQNK-NHTVINID---------IQQSFSAENLKFIKADLTKQ 56
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ +D ++ D + NA + + + E + + N + L
Sbjct: 57 QDITNVLDII-KNVS-FDGIFLNAGILIKGSIFDI-DIESIKKVLDLNVWSSIYFIKGLE 113
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
++LK ++ GS
Sbjct: 114 NNLKV----GASIVFNGSDQC 130
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 7e-13
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG G+G +A +G +++ +D + A + D+
Sbjct: 12 VVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELPGA----VFILCDVTQE 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D V+ V T RR GR LD +V NA + P + +A+GF + N LG + L++L
Sbjct: 67 DDVKTLVSETIRRFGR-LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLA 125
Query: 208 LDDLKQS 214
L L++S
Sbjct: 126 LPYLRKS 132
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 1e-12
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG S G+G + LA G + R+ + DL+S
Sbjct: 13 LVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS 71
Query: 150 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 205
++ ++T G+ L++LV NA + + +T E + L + N + LS
Sbjct: 72 ERQELMNTVANHFHGK-LNILVNNAGI---VIYKEAKDYTVEDYSLIMSINFEAAYHLSV 127
Query: 206 LLLDDLKQSDYPSKRLII-VGSITG 229
L LK S+ + ++ + S++G
Sbjct: 128 LAHPFLKASERGN---VVFISSVSG 149
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 13/156 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGAS+G+G A A AE G + +A R + A + D+
Sbjct: 35 ALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQP 93
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 205
D VR +D G +D+ VCNA + + + E F+ TN G FL ++
Sbjct: 94 DQVRGMLDQMTGELGG-IDIAVCNAGI---VSVQAMLDMPLEEFQRIQDTNVTGVFLTAQ 149
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241
+ +I S++G N+P +
Sbjct: 150 AAARAMVDQGLGG-TIITTASMSG----HIINIPQQ 180
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITGA G+GL T++ LA G +++A AA S G +DL +
Sbjct: 14 AIITGACGGIGLETSRVLARAG-ARVVLADLPETDLAGAAASVG---RGAVHHVVDLTNE 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SVR +D T GR LD++ NAA P T + ++ + N G L+ +
Sbjct: 70 VSVRALIDFTIDTFGR-LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCK 127
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G TA A+ G ++ + R + E + +G++++ + D+
Sbjct: 9 VIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 67
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT---FTAEGFELSVGTNHLGHF 201
+ D Q ++ T ++ G+ +DVLV NA +P A T + + ++ N
Sbjct: 68 TTEDGQDQIINSTLKQFGK-IDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI 126
Query: 202 LLSRLLLDDLKQS 214
+++ + L S
Sbjct: 127 EMTKKVKPHLVAS 139
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++T ++ G+GLA A+ LA+ G H++++ R +R + + T +
Sbjct: 17 ALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKA 75
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ + V G +D+LV NAAV T E ++ + N L+++ +
Sbjct: 76 EDRERLVAMAVNLHGG-VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAV 134
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
+ ++++ S ++IV S+
Sbjct: 135 VPEMEKRGGGS--VLIVSSVGA 154
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 10/153 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+TG+S G+G A A+A A+ G + + E+A + +++
Sbjct: 37 ASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDP 95
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SV + + + G +DV V NA V + + + + + + G + S
Sbjct: 96 KSVEETISQQEKDFGT-IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHN 154
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
+ K++ S LII SI+G N+P
Sbjct: 155 IGKIFKKNGKGS--LIITSSISG----KIVNIP 181
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 1e-12
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
V ITGAS G+G A A A+ G +I A + A+E
Sbjct: 48 VFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCI 107
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
+D+ + V+ ++ G +D+LV NA+ T T + +L + N G +
Sbjct: 108 VDVRDEQQISAAVEKAIKKFGG-IDILVNNASAISLTNTLDT-PTKRLDLMMNVNTRGTY 165
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVP 239
L S+ + LK+S ++ + N +
Sbjct: 166 LASKACIPYLKKSKVA--HILNISPPLNLNPVWFKQHCA 202
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH-LDLAS 147
ITG SG+G A+ G H ++A R + AA+ A + +D+ +
Sbjct: 30 AFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA 88
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V VD + GR +D+L+ AA + F+ + + G F +SR
Sbjct: 89 PPAVMAAVDQALKEFGR-IDILINCAAGNFLCPAG-ALSFNAFKTVMDIDTSGTFNVSR 145
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
+G+ I++G + GLG AT + L G +++A K + A G + +
Sbjct: 29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELG---NRAEFVSTN 84
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGH 200
+ S DSV ++ + GR +V + + GF ++ G
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 201 FLLSRL 206
+ ++RL
Sbjct: 145 YNVARL 150
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 38/159 (23%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
+ ITGAS G+GLA A A G I A + A +
Sbjct: 9 LFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALK 68
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D+ D VR V T G +D+LV NA+ T + F+L N G F
Sbjct: 69 CDIREEDQVRAAVAATVDTFGG-IDILVNNASAIWLRGTLDT-PMKRFDLMQQVNARGSF 126
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVP 239
+ ++ L L Q+ P ++ + N +
Sbjct: 127 VCAQACLPHLLQAPNP--HILTLAPPPSLNPAWWGAHTG 163
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA +GLATA LAE G I + + E+A S D+ S
Sbjct: 10 CLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSE 68
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++V VD R G+ +D L NA A + ++ F + N G F + +
Sbjct: 69 EAVIGTVDSVVRDFGK-IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLK 125
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
+ +V ++TG +SGLGLAT K L + G +++ D ++ E G + D
Sbjct: 8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVL---D-IRGEDVVADLG---DRARFAAAD 60
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHF 201
+ +V +D G L ++V A +++ F+ F V N +G F
Sbjct: 61 VTDEAAVASALDLAETMG-TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119
Query: 202 LLSRL 206
+ RL
Sbjct: 120 NVLRL 124
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G + A A+ G + + R+ + E + AG+ E + D+
Sbjct: 29 VIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 87
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLL 203
++ T + G+ +D+LV NA L T E ++ + N +
Sbjct: 88 TEASGQDDIINTTLAKFGK-IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEM 146
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
++ + L ++ ++ V SI
Sbjct: 147 TQKTKEHLIKT---KGEIVNVSSIVA 169
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
+ I+G S G+GLA AK +A G ++A + AKE +
Sbjct: 12 MFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIV 71
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D+ D+V V T + G +D+ V NA+ + E + F+L G G +
Sbjct: 72 GDIRDGDAVAAAVAKTVEQFGG-IDICVNNASAINLGSIE-EVPLKRFDLMNGIQVRGTY 129
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
+S+ + +K D P ++ + P
Sbjct: 130 AVSQSCIPHMKGRDNP--HILTLSPPIRLEPKWLRPTP 165
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
+ITG++SG+GLA A+ LA+ G +I++ R + T++H D+
Sbjct: 28 AVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMT 86
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + D+LV NA V K F E ++ + N F R
Sbjct: 87 KPSEIADMMAMVADRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNLSSSFHTIRG 145
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+ +K+ + R+I + S G L + P K+
Sbjct: 146 AIPPMKKKGW--GRIINIASAHG----LVAS-PFKSA 175
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-12
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA SG+G A A A G H++ R + A + + DLA L+
Sbjct: 35 VVTGAGSGIGRAIAHGYARAGA-HVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLE 92
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ + R +DVLV NA + E + + + N ++LSR
Sbjct: 93 GAANVAEELAATRR-VDVLVNNAGIIARAPAE-EVSLGRWREVLTVNLDAAWVLSR 146
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-12
Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 13/146 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG +SGLG A G + + + + + G N + D+ SL
Sbjct: 8 ALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLRELEVAHG---GNAVGVVGDVRSL 63
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLL 203
++ + G+ +D L+ NA ++ + F+ N G+
Sbjct: 64 QDQKRAAERCLAAFGK-IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHA 122
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
+ L L S ++ S G
Sbjct: 123 VKACLPALVSS---RGSVVFTISNAG 145
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-12
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V +ITG +SGLGLATA+ L G ++ E AK G N D
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLG---NNCVFAPAD 66
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAV-----YLPTAKEPTFTAEGFELSVGTNHLG 199
+ S V+ + + +DV V A + K T T E F+ + N +G
Sbjct: 67 VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 126
Query: 200 HFLLSRL 206
F + RL
Sbjct: 127 TFNVIRL 133
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 4e-12
Identities = 45/191 (23%), Positives = 60/191 (31%), Gaps = 38/191 (19%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ ITG++SG+G A + LA G +I R DL++
Sbjct: 4 IAITGSASGIGAALKELLARAG-HTVIGIDRG---QADIEA--------------DLSTP 45
Query: 149 DSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V R G LD LVC A V TA L V N+ G L L
Sbjct: 46 GGRETAVAAVLDRCGGVLDGLVCCAGV--------GVTAANSGLVVAVNYFGVSALLDGL 97
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
+ L + P+ V ++A P A L + G G
Sbjct: 98 AEALSRGQQPA----AV-----IVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQG- 147
Query: 268 FDGAKAYKDSK 278
AY SK
Sbjct: 148 -QTHLAYAGSK 157
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 4e-12
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
M T L I+TGA +G+GLA A+ LA+ G H++ A D A+
Sbjct: 9 MGTLEAQTQGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAAD 67
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
AA G +D++ + VD G +D LV NA V +
Sbjct: 68 AAATKIG---CGAAACRVDVSDEQQIIAMVDACVAAFGG-VDKLVANAGVVHLASLI-DT 122
Query: 185 TAEGFELSVGTNHLGHFLLSR 205
T E F+ + N G +L ++
Sbjct: 123 TVEDFDRVIAINLRGAWLCTK 143
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 5e-12
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 14/148 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG + G+G A + A G I R+ + T D +
Sbjct: 18 LVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 76
Query: 150 SVRQFVDTFRRS-GRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSRL 206
+ + T G LD+L+ N +PT +TAE F + TN + LS+L
Sbjct: 77 EREKLMQTVSSMFGGKLDILINNLGA---IRSKPTLDYTAEDFSFHISTNLESAYHLSQL 133
Query: 207 LLDDLKQSDYPSKRLII----VGSITGN 230
LK S + II + +
Sbjct: 134 AHPLLKASGCGN---IIFMSSIAGVVSA 158
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 6e-12
Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 13/151 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITGA +G+G A A G ++++ + A D+ S
Sbjct: 14 AIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE 72
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ D + G+ +D+LV NA P + F + N F LS+L+
Sbjct: 73 QELSALADFAISKLGK-VDILVNNAGGGGPKPFD--MPMADFRRAYELNVFSFFHLSQLV 129
Query: 208 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
+ K ++ + S+ N
Sbjct: 130 APEMEKNG---GGVILTITSMAA----ENKN 153
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-12
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
K V I+TGASSGLG A + LA+ G ++ E A G + D
Sbjct: 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELG---AAVRFRNAD 61
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHF 201
+ + + ++ + LV A + + F +V N +G F
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 202 LLSRL 206
+ RL
Sbjct: 122 NMIRL 126
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-12
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGA+ GLG A A+AL G ++++ R A+ G + DLA
Sbjct: 3 VLITGATGGLGGAFARALK--G-HDLLLSGRRAGALAELAREVGA-----RALPADLADE 54
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ ++ LD+LV + + E + + L + +L
Sbjct: 55 LEAKALLEEAGP----LDLLVHAVGKAGRASVR-EAGRDLVEEMLAAH----LLTAAFVL 105
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNT 233
+ R + G+
Sbjct: 106 KHARFQKGA--RAVFFGAYPRYVQV 128
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 9e-12
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 14/166 (8%)
Query: 76 SSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK- 129
S +G+ L G I+TG ++G+G A K L E G ++++A R + + AA
Sbjct: 3 SWAKGRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADE 61
Query: 130 ----SAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
+ + ++ + + V V T G+ ++ LV N + E
Sbjct: 62 LQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGK-INFLVNNGGGQFLSPAE-HI 119
Query: 185 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230
+++G+ + TN G F + + + + S IIV + G
Sbjct: 120 SSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF 165
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 9e-12
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 91 ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS 150
+TGASSG G A A+A G +I R E + + LD+ +
Sbjct: 10 VTGASSGFGRAIAEAAVAAG-DTVIGTARR---TEALDDLVAAYPDRAEAISLDVTDGER 65
Query: 151 VRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+ R GR +DVLV NA A E T + G L+R LL
Sbjct: 66 IDVVAADVLARYGR-VDVLVNNAGRTQVGAFE-ETTERELRDLFELHVFGPARLTRALLP 123
Query: 210 DL-KQSDYPSKRLIIVGSITG 229
+ ++ S ++ + S G
Sbjct: 124 QMRERG---SGSVVNISSFGG 141
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL-AS 147
VI A G+GL T++ L + + ++ R A A K N T D+
Sbjct: 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ ++ + F + +D+L+ A + E ++ N G +
Sbjct: 68 VAESKKLLKKIFDQLKT-VDILINGAGI---------LDDHQIERTIAINFTGLVNTTTA 117
Query: 207 LLDDLKQSDYPSKRLII-VGSITG 229
+LD + +I + S+TG
Sbjct: 118 ILDFWDKRKGGPGGIIANICSVTG 141
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
TL+ + ++TG++SG+GL A+ LA G +I++ F A
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLN--GFGDPAPALAEIARHGVKAVHHP 57
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
DL+ + + R +D+LV NA + A F E ++ + N F
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGIQ-HVAPVEQFPLESWDKIIALNLSAVFH 116
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+RL L ++ ++ R+I + S+ G L G+ KA
Sbjct: 117 GTRLALPGMRARNW--GRIINIASVHG----LVGS-TGKAA 150
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG SSG+G A A+ G +++ R K E A + +D+ +
Sbjct: 9 VIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNT 67
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D +++ ++ + GR +D+L+ NAA E + G+ + G F S+
Sbjct: 68 DDIQKMIEQIDEKFGR-IDILINNAAGNFICPAE-DLSVNGWNSVINIVLNGTFYCSQ 123
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG SG+G ATA+ A+ G ++++A + A R A G + +D++S
Sbjct: 30 CIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVRVANEIG---SKAFGVRVDVSSA 85
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V+ T + GR +DVLV NA T E ++ + N G FL S+
Sbjct: 86 KDAESMVEKTTAKWGR-VDVLVNNAGFGTTGNVV-TIPEETWDRIMSVNVKGIFLCSK 141
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 10/143 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 146
++TG+++G+G A A +L G ++++ R K A + DL
Sbjct: 13 ALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLG 71
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + ++ + + +D+L+ N ++ P E + N + L+R
Sbjct: 72 TEQGCQDVIEKY---PK-VDILINNLGIFEPVEYF-DIPDEDWFKLFEVNIMSGVRLTRS 126
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
L + + R+I + S
Sbjct: 127 YLKKMIERKEG--RVIFIASEAA 147
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
++TG++SG+GL A ALA G I++ ++ A+ +++ DL+
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLS 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
++VR VD R +D+LV NA + E F E ++ + N F +
Sbjct: 66 KGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIE-DFPTEKWDAILALNLSAVFHGTAA 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
L +K+ + R+I + S G L + K+
Sbjct: 125 ALPHMKKQGF--GRIINIASAHG----LVAS-ANKSA 154
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 147
I+TGASSG GLA A G + E A++ A + + D+A
Sbjct: 5 AIVTGASSGNGLAIATRFLARG-DRVAALDLSAETLEETARTHWHAYADKVLRVRADVAD 63
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLS 204
V + T + G +DVLV NA + + T E F+ + N G FL
Sbjct: 64 EGDVNAAIAATMEQFGA-IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGC 122
Query: 205 R 205
R
Sbjct: 123 R 123
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+GLA A E G +++ R E+AAKS G + D +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDE 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D + D T + G + LV NA + + + E T + + N G F +RL
Sbjct: 67 DGWTKLFDATEKAFGP-VSTLVNNAGIAVNKSVE-ETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 208 LDDLKQSDYPSKRLII-VGSITG 229
+ +K + II + SI G
Sbjct: 125 IQRMKNKGLGAS--IINMSSIEG 145
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG+ G+G A A+ALA G +++A + AE AK + +D++
Sbjct: 12 GIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDP 70
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSR 205
+S + D T G +D LV NAA++ + E ++ + N G +R
Sbjct: 71 ESAKAMADRTLAEFGG-IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTR 129
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASL 148
++TG S GLG A+ LAE G +++A R+ +A AA+ D+++
Sbjct: 25 LVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNY 83
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSR 205
+ V++ ++ + LD +V A + + P F + F + N G + + R
Sbjct: 84 EEVKKLLEAVKEKFGKLDTVVNAAGI---NRRHPAEEFPLDEFRQVIEVNLFGTYYVCR 139
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
V+ITG SGLG ATA LA G + + E + + + ++ D++
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 74
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V +V T R GR +D NA + +FTA F+ V N G FL
Sbjct: 75 DEAQVEAYVTATTERFGR-IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLE 133
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+G TAK G +++A ++ + G + + + +H D+
Sbjct: 19 AIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIG-SPDVISFVHCDVTKD 76
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFL 202
+ VR VD T + G+ LD++ N V T E F+ + N G FL
Sbjct: 77 EDVRNLVDTTIAKHGK-LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 21/192 (10%)
Query: 52 REFSQRNGVVRAQTMATASPAVDVSSPQGK----KTLRKGSVIITGASSGLGLATAKALA 107
G + AQT S V S+ + L SV++TG + G+G A A
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFA 62
Query: 108 ETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167
G + A + A+ + N + LD++ S T + LDV
Sbjct: 63 RAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDV 122
Query: 168 LVCNAAVY----LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLI 222
+ NA ++ L T E + N G + L R+I
Sbjct: 123 VCANAGIFPEARLDTMTP-----EQLSEVLDVNVKGTVYTVQACLAPLTASG---RGRVI 174
Query: 223 ----IVGSITGN 230
I G +TG
Sbjct: 175 LTSSITGPVTGY 186
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 3e-11
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A A+A A G + + E A G +DL
Sbjct: 9 VLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGKEVAEAIGGAF------FQVDLEDE 61
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+FV+ GR +DVLV NAA+ P + + + N LS
Sbjct: 62 RERVRFVEEAAYALGR-VDVLVNNAAIAAPGSALTV-RLPEWRRVLEVNLTAPMHLSA 117
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 4e-11
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 19/152 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+T A+ G+G A A A A G +I + K + K G+ LD+
Sbjct: 9 IILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQ-----TRVLDVTKK 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ QF + R LDVL A + ++ S+ N +L+ + L
Sbjct: 63 KQIDQFANEVER----LDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFL 117
Query: 209 DDLKQSDYPSKRLII-----VGSITGNTNTLA 235
+ + II S+ G N
Sbjct: 118 PKMLAQKSGN---IINMSSVASSVKGVVNRCV 146
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 5e-11
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG + GLG A+ G +++A + A+ G + HLD+
Sbjct: 8 VIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARELG---DAARYQHLDVTIE 63
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ ++ V G +D LV NA + E T + E F V N G F+
Sbjct: 64 EDWQRVVAYAREEFGS-VDGLVNNAGISTGMFLE-TESVERFRKVVEINLTGVFI 116
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 5e-11
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+GL K L G + + + ++ A G E + D++S
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSE 64
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ RR G L+VLV NA + LP E T E F + N F+
Sbjct: 65 ADWTLVMAAVQRRLGT-LNVLVNNAGILLPGDME-TGRLEDFSRLLKINTESVFI 117
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 7e-11
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG SSG+GLA AL G ++ D + +D+ +
Sbjct: 17 AIVTGGSSGIGLAVVDALVRYG-AKVVSVSLDEKSDVNVSDH----------FKIDVTNE 65
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ V++ V+ T ++ GR +D+LV NA + + E + + N G +L+++
Sbjct: 66 EEVKEAVEKTTKKYGR-IDILVNNAGIEQYSPLH-LTPTEIWRRIIDVNVNGSYLMAK 121
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 7e-11
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGASSG+G A A A G +++ R+ + D+
Sbjct: 11 AIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDE 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V+ RR G LD NA + + + EG+ ++ TN FL ++
Sbjct: 70 ALHEALVELAVRRFGG-LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAK 126
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 8e-11
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG+S G+GLATA+ A G + + + S + DLA+
Sbjct: 10 VLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATS 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
++ +Q VD + G +DVL+ NA + P ++ + N + ++
Sbjct: 70 EACQQLVDEFVAKFGG-IDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFA 128
Query: 208 LDDLKQSDYPSKRL--II-VGSITGNTNTLAGNVPPKAN 243
L L + S + +I GSI G G P
Sbjct: 129 LPHLAAAAKASGQTSAVISTGSIAG----HTGGGPGAGL 163
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 9e-11
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG++ G+G A A+A G + +A D +A +AA G + +D+
Sbjct: 11 ALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG---PAAYAVQMDVTRQ 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
DS+ + T +G LD+LV NAA++ A T E +E N G +
Sbjct: 67 DSIDAAIAATVEHAGG-LDILVNNAALF-DLAPIVEITRESYEKLFAINVAGTLFTLQ 122
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYT 139
K + +TG ++G+G+ + L G + +A ++A A +
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVM 62
Query: 140 IMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAV 174
+ LD+AS + + D R G + +L NA V
Sbjct: 63 GVQLDVASREGFKMAADEVEARFGP-VSILCNNAGV 97
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 2e-10
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+TGA SG+G A AK A ++ + + + + + D++
Sbjct: 10 VIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKK 68
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V +FV TF R +DVL NA + + E +E + N F SR
Sbjct: 69 KDVEEFVRRTFETYSR-IDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSR 125
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 2e-10
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++T A G A +AL + G + ++ F A + +
Sbjct: 5 LVTHARHFAGPAAVEALTQDG-YTVVCHDASFADAAERQRFESEN------PGTIALAEQ 57
Query: 150 SVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSR 205
+ VD T + +D +V N + P + P + + LL +
Sbjct: 58 KPERLVDATLQHGEA-IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQ 115
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN 137
P+G R + +TG SSG+GLA A+ LA G + RD A A +
Sbjct: 16 PRGSHMSRPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGHD 74
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
D+ S D V V P+ +LV +A
Sbjct: 75 VDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 15/118 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A AL G + +A R A + DL
Sbjct: 31 ALVTGAAGGIGGAVVTALRAAG-ARVAVADRA---VAGIAADLHLP--------GDLREA 78
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
GR LD++V NA V T + LS+G N F + R
Sbjct: 79 AYADGLPGAVAAGLGR-LDIVVNNAGVISRGRIT-ETTDADWSLSLGVNVEAPFRICR 134
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ L G +++ RD K + A DL+
Sbjct: 32 AVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHS 90
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV 174
D++ F GR DVLV NA V
Sbjct: 91 DAIAAFATGVLAAHGR-CDVLVNNAGV 116
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 3e-10
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 5/171 (2%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
MA ++ K L + TGA G+G A L G ++ AE
Sbjct: 1 MAPSADITSSGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE 60
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT 185
+ D++ V D LD ++ N+ + + + T
Sbjct: 61 EVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEV-T 119
Query: 186 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
E F+ N G F +++ L ++ R+I+ SI +
Sbjct: 120 QELFDKVFNLNTRGQFFVAQQGLKHCRRGG----RIILTSSIAAVMTGIPN 166
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 3e-10
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 89 VIITGASSGLGLATAKALAETG------KWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
++ITGA G+G A A A + ++++ R E+ + +
Sbjct: 5 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 64
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAV 174
D++ + VR+ R G +D LV NA V
Sbjct: 65 ADISDMADVRRLTTHIVERYGH-IDCLVNNAGV 96
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 4e-10
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++G + G+G + +A+ G ++ + + A + +HLD+
Sbjct: 10 ALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQP 65
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ VD G L VLV NA + E + ++ + N G FL
Sbjct: 66 AQWKAAVDTAVTAFGG-LHVLVNNAGILNIGTIE-DYALTEWQRILDVNLTGVFL 118
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-10
Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA++G+G A A A+ G +++ AE A + A + ++
Sbjct: 15 AIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDE 73
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ + G+ + VLV NA P + FE + N F LS+L
Sbjct: 74 QHREAVIKAALDQFGK-ITVLVNNAGGGGPKPFD--MPMSDFEWAFKLNLFSLFRLSQLA 130
Query: 208 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
K ++ + S+ G N
Sbjct: 131 APHMQKAG---GGAILNISSMAG----ENTN 154
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 4e-10
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGA SG+G ATA ALA G + R + E A A + D++
Sbjct: 31 ALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDE 89
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+R V + G LD++V NA + A ++ ++ N G FL
Sbjct: 90 LQMRNAVRDLVLKFGH-LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLH 146
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-10
Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 7/146 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A A G + A + + D++
Sbjct: 13 VVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDR 72
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+DV+ NA V+ P A T T E N G F + L
Sbjct: 73 AQCDALAGRAVEEFGGIDVVCANAGVF-PDAPLATMTPEQLNGIFAVNVNGTFYAVQACL 131
Query: 209 DDLKQSDYPSKRLI----IVGSITGN 230
D L S R++ I G ITG
Sbjct: 132 DALIASGSG--RVVLTSSITGPITGY 155
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-10
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 19/153 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
++TGA+ G+G A A+AL G + + + + + E + D+A
Sbjct: 10 ALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 68
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+R GR LD+LV NA V + +E ++ N + +
Sbjct: 69 DQQQLRDTFRKVVDHFGR-LDILVNNAGV---------NNEKNWEKTLQINLVSVISGTY 118
Query: 206 LLLDDLKQSDYPSKRLII-VGSITGNTNTLAGN 237
L LD + + + +II + S+ G L
Sbjct: 119 LGLDYMSKQNGGEGGIIINMSSLAG----LMPV 147
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 9e-10
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG S G+G A A+AL + G + +A D A + + +D+
Sbjct: 15 AIVTGGSKGIGAAIARALDKAG-ATVAIADLD---VMAAQAVVAGLENGGFAVEVDVTKR 70
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SV + G D+L NA V T E ++ + N G FL ++
Sbjct: 71 ASVDAAMQKAIDALGG-FDLLCANAGVS-TMRPAVDITDEEWDFNFDVNARGVFLANQ 126
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 9e-10
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 21/157 (13%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKE 136
+ +K ++TG SG+G A A A A G + + +L AE A + + +E
Sbjct: 48 KDRK------ALVTGGDSGIGRAAAIAYAREG-ADVAIN---YLPAEEEDAQQVKALIEE 97
Query: 137 ---NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELS 192
++ DL+ R V G LD+L A + T+E F+ +
Sbjct: 98 CGRKAVLLPGDLSDESFARSLVHKAREALGG-LDILALVAGKQTAIPEIKDLTSEQFQQT 156
Query: 193 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N F +++ + L + +I SI
Sbjct: 157 FAVNVFALFWITQEAIPLLPKGA----SIITTSSIQA 189
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
S ++TG +SGLG A A AL G + +++ D L+ E + D+
Sbjct: 4 SALVTGGASGLGRAAALALKARG-YRVVVL--D-LRREGEDLIY---------VEGDVTR 50
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLS 204
+ VR+ V + PL +V A V L KE E F + N LG F +
Sbjct: 51 EEDVRRAVARAQEEA-PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVL 109
Query: 205 RL 206
RL
Sbjct: 110 RL 111
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 15/149 (10%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+T G+ +A L+E G + F + + A L S
Sbjct: 5 IVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETY------PQLKPMSEQ 57
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+ ++ + +DVLV N + E + +V + F L +
Sbjct: 58 EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVAS 117
Query: 210 D-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
K+ S +I + S T
Sbjct: 118 QMKKRK---SGHIIFITSATP----FGPW 139
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 2e-09
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG S G+G A A+AL G + + +A R+ +A ++ + + DL D
Sbjct: 6 LVTGGSRGIGRAIAEALVARG-YRVAIASRNPEEAAQSLGAVPLP--------TDL-EKD 55
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 205
+ V + L VLV AAV ++P + E + + + FLL++
Sbjct: 56 DPKGLVKRALEALGGLHVLVHAAAV---NVRKPALELSYEEWRRVLYLHLDVAFLLAQ 110
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+TGAS G+G A A+ + G +I + + D+ +
Sbjct: 11 VIVTGASMGIGRAIAERFVDEG-SKVIDLSIH----DPGEAKY-------DHIECDVTNP 58
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D V+ +D F+ G + VLV NA + E + + + + N G++ S+
Sbjct: 59 DQVKASIDHIFKEYGS-ISVLVNNAGIESYGKIE-SMSMGEWRRIIDVNLFGYYYASK 114
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+SG+GL A+ L + G + + R K A D+ S+
Sbjct: 25 ALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV 83
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ V P+DVLV NA
Sbjct: 84 PEIEALVAAVVERYGPVDVLVNNA 107
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 76 SSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA 134
+ QG +++ V +TG GLG A ++ L + G + A
Sbjct: 14 AQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA 73
Query: 135 KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
++ +D+A +S + + +DVL+ NA
Sbjct: 74 GRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNA 111
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 14/158 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGAS G+G A L + G + + R A+ A + D +
Sbjct: 9 VVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQES 67
Query: 150 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTF------TAEGFELSVGTNHLGHF 201
VR + R GR LDVLV NA + T A ++ GH+
Sbjct: 68 EVRSLFEQVDREQQGR-LDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHY 126
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
S + + ++++ S NVP
Sbjct: 127 FCSVYGARLMVPA--GQGLIVVISSPGSLQY--MFNVP 160
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 4e-09
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGASSG+G A A+ L + G II E+ K+NYTI +LA+
Sbjct: 17 SLITGASSGIGSAIARLLHKLGSKVIISGSN----EEKLKSLGNALKDNYTIEVCNLANK 72
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ + LD+LVCNA
Sbjct: 73 EECSNLISKT---SN-LDILVCNA 92
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 12/155 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG G+GL A+ALA +G I D + DLA L
Sbjct: 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADL 91
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP----TFTAEGFELSVGTNHLGHFLLS 204
S + VD +D LV NA + + E F+ VG N G +
Sbjct: 92 SSHQATVDAVVAEFGRIDCLVNNAGI---ASIVRDDFLDLKPENFDTIVGVNLRGTVFFT 148
Query: 205 RLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ +L L S+ +I + S++ + +
Sbjct: 149 QAVLKAMLASDARASRSIINITSVSA----VMTSP 179
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 6e-09
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 14/144 (9%)
Query: 70 SPAVDVSSP--QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-- 125
S VD+ + + V++TG S G+G A + A G + + A+
Sbjct: 8 SSGVDLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAV 67
Query: 126 -RAAKSAG---MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 181
A +G +A + D+ + + R LD LV NA + +
Sbjct: 68 VAAITESGGEAVA------IPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRV 121
Query: 182 PTFTAEGFELSVGTNHLGHFLLSR 205
+ E E + N G L +
Sbjct: 122 DEMSVERIERMLRVNVTGSILCAA 145
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-09
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 19/185 (10%)
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLR-KGSV-IITGASSGLGLATAKALAETGKWHIIMA 117
+ S + P G ++ +G V ++TGA G+G A L G I+
Sbjct: 1 MPAVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNY 60
Query: 118 CRDFLKAE---RAAKSAG---MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCN 171
AE A K G + ++ ++ + + + + LD++ N
Sbjct: 61 ANSTESAEEVVAAIKKNGSDAAC------VKANVGVVEDIVRMFEEAVKIFGKLDIVCSN 114
Query: 172 AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
+ V + T E F+ N G F ++R L+ RLI++GSITG
Sbjct: 115 SGVVSFGHVK-DVTPEEFDRVFTINTRGQFFVAREAYKHLEIGG----RLILMGSITGQA 169
Query: 232 NTLAG 236
+
Sbjct: 170 KAVPK 174
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-09
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMH--- 142
++TGA SG+G A + LA G + D A+ G + H
Sbjct: 10 ALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAF 68
Query: 143 -LDLASLDSVRQFVDTFR-RSGRPLDVLVCNA 172
D++ + R ++ + RP V+V A
Sbjct: 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCA 100
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 9e-09
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G A A L + G + +A + A+ A A + + +D++
Sbjct: 5 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDR 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D V V+ R++ DV+V NA V P+ + T E + N G +
Sbjct: 64 DQVFAAVEQARKTLGGFDVIVNNAGVA-PSTPIESITPEIVDKVYNINVKGVIWGIQ 119
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 1e-08
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A ALA G ++ AE+ S + L+++ +
Sbjct: 8 ALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDI 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+S++ F + +D+LV NA
Sbjct: 67 ESIQNFFAEIKAENLAIDILVNNA 90
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++TGA+SG+G A A G ++ R+ A + + D++
Sbjct: 9 ILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE---AEAIAVVADVSDP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+V L + A
Sbjct: 65 KAVEAVFAEALEEFGRLHGVAHFA 88
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 68 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127
TA+ V + +++ ++ + +G+ +A LA G +++ R KA+ A
Sbjct: 101 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA 159
Query: 128 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
A S + + + A S + V + A
Sbjct: 160 ADSVN-KRFKVNVTAAETADDASRAEAVKG-------AHFVFTAGA 197
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V +TGA G+G ATA A E G + + F + + + +D+A
Sbjct: 10 VWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFTQEQYPFAT----------EVMDVADA 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV 174
V Q LD LV A +
Sbjct: 59 AQVAQVCQRLLAETERLDALVNAAGI 84
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 21/188 (11%)
Query: 55 SQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
S ++ V Q + + K L ++TGA+ G+G A+ A G +
Sbjct: 183 SAKSAYVDGQVFRVGAADSTPPADW-DKPLDGKVAVVTGAARGIGATIAEVFARDGATVV 241
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR-RSGRPLDVLVCNAA 173
+ K T + LD+ + D+V + G +D+LV NA
Sbjct: 242 AIDVD----GAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAG 297
Query: 174 VYLPTAKEPTF---TAEGFELSVGTNHLGHFLLSRLLLD-DLKQSDYPSKRLIIVGSITG 229
+ T ++ + ++ + N L L+ L+ R+I + S+ G
Sbjct: 298 I---T-RDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIG---EGGRVIGLSSMAG 350
Query: 230 NTNTLAGN 237
+AGN
Sbjct: 351 ----IAGN 354
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 16/159 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDL 145
+++ GA +G A A A+ G ++++ AE AA + ++ + + DL
Sbjct: 11 IVVAGAGRDIGRACAIRFAQEG-ANVVLTYNG--AAEGAATAVAEIEKLGRSALAIKADL 67
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ V + + G + LV A + + + N FL +
Sbjct: 68 TNAAEVEAAISAAADKFGE-IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTA 126
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+ L + + ++ S G G P
Sbjct: 127 KTALPKMAKGG----AIVTFSSQAG----RDGGGPGALA 157
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGAS G+G +A + + ++ + A + + D++
Sbjct: 31 VVITGASQGIGAGLVRAYRDRN-YRVVAT---------SRSIKPSADPDIHTVAGDISKP 80
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNA 172
++ + V R GR +D LV NA
Sbjct: 81 ETADRIVREGIERFGR-IDSLVNNA 104
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 18/173 (10%)
Query: 71 PAVDVSSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---R 126
P V+ +S G V ++TG+ G+G A A L G ++ AE
Sbjct: 2 PHVENASETYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVS 61
Query: 127 AAKSAG---MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 183
K+ G +A + D+ + + + D LD+ V N+ V +
Sbjct: 62 EIKALGSDAIA------IKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLK-D 114
Query: 184 FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
T E F+ N G F ++R L + R+++ S T ++
Sbjct: 115 VTEEEFDRVFSLNTRGQFFVAREAYRHLTE----GGRIVLTSSNTSKDFSVPK 163
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 19/161 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TG + G+GLA +A+A G ++ E K D+++
Sbjct: 17 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNT 76
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLS- 204
D V + + G + L+ NA V + +P T E F N G F
Sbjct: 77 DIVTKTIQQIDADLGP-ISGLIANAGV---SVVKPATELTHEDFAFVYDVNVFGVFNTCR 132
Query: 205 ---RLLLDDLKQSDYPSKRLIIVGSITG---NTNTLAGNVP 239
+L L KQ +++ S++ N ++L G++
Sbjct: 133 AVAKLWLQ--KQQ---KGSIVVTSSMSSQIINQSSLNGSLT 168
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ LAE G +I A+ + G +N M L++ +
Sbjct: 12 ALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQAISDYLG---DNGKGMALNVTNP 67
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+S+ + +D+LV NA
Sbjct: 68 ESIEAVLKAITDEFGGVDILVNNA 91
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAG---MAKENYTIMHL 143
++TGAS G+G A AK LA G I +AE +S G + +
Sbjct: 11 LVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFS------IGA 64
Query: 144 DLASLDSVRQFVDTFRR-------SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 196
+L SL V + S + D+L+ NA + E T T + F+ V N
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTK-FDILINNAGIGPGAFIEET-TEQFFDRMVSVN 122
Query: 197 HLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
F + + L L+ + R+I + S
Sbjct: 123 AKAPFFIIQQALSRLRDNS----RIINISSAAT 151
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A A+ G + + K + A G ++ + +L+
Sbjct: 30 ALVTGATGGIGEAIARCFHAQG-AIVGLHGTREDKLKEIAADLG---KDVFVFSANLSDR 85
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
S++Q + R +D+LV NA
Sbjct: 86 KSIKQLAEVAEREMEGIDILVNNA 109
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 3e-08
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG+S GLG A A L G ++ + A+ A N + D+ +
Sbjct: 8 AIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNP 67
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ V V T + +D+LV NA
Sbjct: 68 EDVENMVKTAMDAFGRIDILVNNA 91
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG+S+GLG + A A ++ +A + + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V V + G+ LDV++ NA + P + + + + TN G FL SR
Sbjct: 70 SDVINLVQSAIKEFGK-LDVMINNAGLENPVSSH-EMSLSDWNKVIDTNLTGAFLGSR 125
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGAS G+G A A LA G +I AE A A D++
Sbjct: 31 IVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPA 90
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+VR+ T + +DVLV NA + T T F+ + N G F R
Sbjct: 91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAET-GDAVFDRVIAVNLKGTFNTLREAAQ 149
Query: 210 DLKQSDYPSKRLIIVGSITG 229
L+ R+I + +
Sbjct: 150 RLRVGG----RIINMSTSQV 165
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+IT + GLG + L G + D E ++ +E + D+
Sbjct: 10 ALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKK 69
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ + + V+ +D L+ NA
Sbjct: 70 EDLHKIVEEAMSHFGKIDFLINNA 93
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 26/178 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKE---------- 136
V++TG + G G + A LAE G II+ C D E ++ +E
Sbjct: 13 VLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR 71
Query: 137 NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195
+D+ +V + + G+ LDV+V NA + + F +
Sbjct: 72 KAYTAEVDVRDRAAVSRELANAVAEFGK-LDVVVANAGICPLG---AHLPVQAFADAFDV 127
Query: 196 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGG 253
+ +G L L +I GS+ G L P G G
Sbjct: 128 DFVGVINTVHAALPYLTSGA----SIITTGSVAG----LIAAAQPPGAGGPQGPGGAG 177
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKE---------- 136
ITGA+ G G + A LA G II C+ + + E
Sbjct: 31 AFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR 89
Query: 137 NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195
+D+ D+++ VD + GR LD+++ NAA+ + + + +
Sbjct: 90 RIIASQVDVRDFDAMQAAVDDGVTQLGR-LDIVLANAALASEGTRLNRMDPKTWRDMIDV 148
Query: 196 NHLGHFLLSR 205
N G ++ +R
Sbjct: 149 NLNGAWITAR 158
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A A LA G +I++ + A+ AA S G + + D++
Sbjct: 9 ALVTGAAQGIGKAIAARLAADG-ATVIVSDINAEGAKAAAASIG---KKARAIAADISDP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
SV+ + +D+LV NA
Sbjct: 65 GSVKALFAEIQALTGGIDILVNNA 88
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+TG G+G + + L + G + + + + + ++ ++
Sbjct: 16 AYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDW 75
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
DS +Q D + +DVLV NA
Sbjct: 76 DSTKQAFDKVKAEVGEIDVLVNNA 99
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG++ G+G A A+ LA G II A + A + ++L S
Sbjct: 10 SLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSE 69
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+S+ + + +D+LV NA
Sbjct: 70 ESINKAFEEIYNLVDGIDILVNNA 93
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 17/153 (11%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAG---MAKENYTIMHL 143
+TG S G+G A AK LA G + +A+ + AG +A +
Sbjct: 35 FVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVA------IRA 88
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D +++ Q + + LD+LV +A ++ E T F+ + N F+
Sbjct: 89 DNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLE-ETTVADFDEVMAVNFRAPFVA 147
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
R L R+I +GS G
Sbjct: 148 IRSASRHLGD----GGRIITIGSNLAELVPWPG 176
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDL 145
++I G LG TAK A ++++ ++ A K ++ + DL
Sbjct: 14 IVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDL 72
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ + V + D + G+ +D+ + L T + F+ N+ +
Sbjct: 73 SNEEEVAKLFDFAEKEFGK-VDIAINTVGKVLKKPIVET-SEAEFDAMDTINNKVAYFFI 130
Query: 205 R 205
+
Sbjct: 131 K 131
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM 141
KTL K I+TGAS G+G A A LA G +I AE + A
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAAFKQAGLEGRGA 82
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
L++ +V V++ + L+VLV NA
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNA 113
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 19/140 (13%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++ AS G+G A A L++ G + + R+ +R+ + DL
Sbjct: 23 LVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKRSGHRYVVC---------DLR--K 70
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+ + D+LV NA + T E F+ ++ + L + R L
Sbjct: 71 DLDLLFEKV---KEV-DILVLNAGGPKAGFFD-ELTNEDFKEAIDSLFLNMIKIVRNYLP 125
Query: 210 DLKQSDYPSKRLIIVGSITG 229
+K+ + R++ + S +
Sbjct: 126 AMKEKGWG--RIVAITSFSV 143
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 7e-08
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG ++G+G A A+ A G I +A D + A A + + D++
Sbjct: 10 AVITGGANGIGRAIAERFAVEGA-DIAIA--DLVPAPEAEAAIRNLGRRVLTVKCDVSQP 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVY 175
V F GR D+LV NA +Y
Sbjct: 67 GDVEAFGKQVISTFGR-CDILVNNAGIY 93
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 8e-08
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 138
+GK V+ITG SG+G A + A A+ G +I +A +L E A E
Sbjct: 46 KGKN------VLITGGDSGIGRAVSIAFAKEGA-NIAIA---YLDEEGDANETKQYVEKE 95
Query: 139 ----TIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 193
++ DL+ + V T R+ G L++LV N A P TAE E +
Sbjct: 96 GVKCVLLPGDLSDEQHCKDIVQETVRQLGS-LNILVNNVAQQYPQQGLEYITAEQLEKTF 154
Query: 194 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N +F +++ L LKQ D +I SI
Sbjct: 155 RINIFSYFHVTKAALSHLKQGD----VIINTASIVA 186
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 8e-08
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 24/162 (14%)
Query: 89 VIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY----TIMH 142
V++TGAS G+G+ A+ AE G + + +A+ A ++ ++ Y
Sbjct: 23 VVVTGASGPKGMGIEAARGCAEMGA-AVAITYAS--RAQGAEENVKELEKTYGIKAKAYK 79
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLG 199
+ S +S + V G+ +D + NA TA + E + V + G
Sbjct: 80 CQVDSYESCEKLVKDVVADFGQ-IDAFIANAGA---TADSGILDGSVEAWNHVVQVDLNG 135
Query: 200 HFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
F ++ + ++ + L+I S++G N P
Sbjct: 136 TFHCAKAVGHHFKERG---TGSLVITASMSG----HIANFPQ 170
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 9e-08
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G AK LA++ H+I R + + D++
Sbjct: 47 ALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK 105
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ + + ++ + +D+LV NA
Sbjct: 106 EEISEVINKILTEHKNVDILVNNA 129
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 73 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132
++ K SV++TG + G+GLA A+ LA G + + G
Sbjct: 2 TATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG----SGAPKGLFG 57
Query: 133 MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEG 188
+ +D+ D+V + P++VLV NA + +L E E
Sbjct: 58 VE--------VDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTE-----EK 104
Query: 189 FELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
FE + N G F +++ + R+I +GS++G L G
Sbjct: 105 FEKVINANLTGAFRVAQRASRSMQRNK---FGRMIFIGSVSG----LWGI 147
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 1e-07
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA+ G ++ + KA + + D+A+
Sbjct: 7 ALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANA 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ V V +D+LV NA
Sbjct: 67 EDVTNMVKQTVDVFGQVDILVNNA 90
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 22/84 (26%), Positives = 31/84 (36%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA G + A+ + A + D++
Sbjct: 31 ALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQE 90
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
V LDVLV NA
Sbjct: 91 SEVEALFAAVIERWGRLDVLVNNA 114
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 30/221 (13%), Positives = 61/221 (27%), Gaps = 43/221 (19%)
Query: 45 SSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAK 104
SS L + + + +++P ++TGA+ LG + A+
Sbjct: 11 SSGLVPRGSHMGSSHHHHHHSSGLVPRGSHMTAPTVP------VALVTGAAKRLGRSIAE 64
Query: 105 ALAETGKWHIIMACR------DFLKAERAAKSAGMA-------------KENYTIMHLDL 145
L G + + + + L A A+ A + +
Sbjct: 65 GLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 123
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSV-------- 193
+ V DVLV NA+ + PT E +
Sbjct: 124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADL 183
Query: 194 -GTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITG 229
G+N + + L + + + + +I +
Sbjct: 184 FGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMT 224
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 29/177 (16%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
M ++ SS ++ SV++TG + G+GLA A+A A+ G I E
Sbjct: 1 MGSSHHHHHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG----E 56
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKE 181
+ D+ + V Q + P++VL+ NA V L E
Sbjct: 57 PPEGFLAVK--------CDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSE 108
Query: 182 PTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
E F V TN G F + + L+ R++++ S+ G L G+
Sbjct: 109 -----EDFTSVVETNLTGTFRVVKRANRAMLRAK---KGRVVLISSVVG----LLGS 153
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKENYTIMHLDLA 146
++TG + G+G ++ LA G + I +A + +A K A + + LD+
Sbjct: 5 AMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVT 63
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ +D + G DVLV NA + T E + N F +
Sbjct: 64 DKANFDSAIDEAAEKLGG-FDVLVNNAGIA-QIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKENYTI------ 140
ITGA+ G G A A LA G II C + T+
Sbjct: 16 AFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAA--TVKLVEDI 72
Query: 141 ------MHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTA 186
D+ +S+ + GR LD++V NA + +A + +
Sbjct: 73 GSRIVARQADVRDRESLSAALQAGLDELGR-LDIVVANAGIAPMSAGDDGWHD 124
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 30/167 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMAKENYTIMH 142
++TGA+ +G A A L +TG + +++ L E + + A +
Sbjct: 26 AVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADELNKERSNTAV----VCQ 80
Query: 143 LDLASLDSVRQFVD-----TFRRSGRPLDVLVCNAAVYLPT---------AKEPTFTAEG 188
DL + + + + FR GR DVLV NA+ + PT
Sbjct: 81 ADLTNSNVLPASCEEIINSCFRAFGR-CDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQ 139
Query: 189 FELSVGTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITGNT 231
+GTN + FLL+ K ++ ++ + +
Sbjct: 140 VAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQ 186
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G + A LAE G + KAE + + + ++A
Sbjct: 7 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADA 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
D V+ + LDVLV NA
Sbjct: 67 DEVKAMIKEVVSQFGSLDVLVNNA 90
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
+ITGAS G+G A A LAE G I ++ KAE A+ ++ +L
Sbjct: 4 ALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE 63
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNA 172
++ V LD LV NA
Sbjct: 64 AEAATALVHQAAEVLGGLDTLVNNA 88
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG+S G+G A A LAE G +I R A A+ ++ ++
Sbjct: 7 ALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQP 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+++ GR LDV V NAA + ++ ++ N ++
Sbjct: 67 AKIKEMFQQIDETFGR-LDVFVNNAASGVLRPVM-ELEETHWDWTMNINAKALLFCAQ 122
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 20/172 (11%)
Query: 77 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
+ + + +ITG + +G + A L + G ++ A+R A+
Sbjct: 2 NETSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA 61
Query: 137 NYTI-MHLDLASLDSVRQFVD-----TFRRSGRPLDVLVCNAAVYLPT----------AK 180
+ DL+ S+ + +FR GR DVLV NA+ Y PT A
Sbjct: 62 GSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGR-CDVLVNNASAYYPTPLLPGDDTNGAA 120
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRL--II-VGSITG 229
+ G+N + L R + R ++ +
Sbjct: 121 DAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 172
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 22/163 (13%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK--------AERAAKSAGMAKE-- 136
ITGA+ G G + A LA G II C E ++A + ++
Sbjct: 18 AFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG 76
Query: 137 -NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVG 194
LD+ ++R+ V + GR LDV+V NA V L + T E ++ +G
Sbjct: 77 RKALTRVLDVRDDAALRELVADGMEQFGR-LDVVVANAGV-LSWGRVWELTDEQWDTVIG 134
Query: 195 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237
N G + R + + ++ +++V S G L
Sbjct: 135 VNLTGTWRTLRATVPAMIEAGN-GGSIVVVSSSAG----LKAT 172
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-07
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGAS G+G A A +L + G ++ R AE +K D++
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
V + T + +DV+V NA
Sbjct: 64 ADVEAMMKTAIDAWGTIDVVVNNA 87
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK-----------AERAAKSAGMAK 135
+TGA+ G G + A LA+ G II C+ E A++A + K
Sbjct: 14 AFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK 72
Query: 136 EN---YTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFEL 191
+ +D+ D+++ VD + GR LD++V NA + + E +
Sbjct: 73 GHNRRIVTAEVDVRDYDALKAAVDSGVEQLGR-LDIIVANAGIGNGGDTLDKTSEEDWTE 131
Query: 192 SVGTN 196
+ N
Sbjct: 132 MIDIN 136
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 37/177 (20%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMA-------- 134
++TGA+ LG + A+ L G + + + + L A A+ A
Sbjct: 12 ALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 70
Query: 135 -----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFT 185
+ + + V DVLV NA+ + PT E
Sbjct: 71 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHE 130
Query: 186 AEGFELSV---------GTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITG 229
+ G+N + + L + + + + +I +
Sbjct: 131 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMT 187
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* Length = 405 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 7e-07
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 73 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132
+D + +G V++ GAS+G GLA A + + E ++G
Sbjct: 34 IDYVTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSG 93
Query: 133 MAKENYTI------------MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
++ D S + + +D ++ +D ++ + A
Sbjct: 94 WYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-07
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGA+ G+G AT + A+ G + + E A + +D+A
Sbjct: 8 VLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHP------VVMDVADP 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
SV + LD +V A
Sbjct: 62 ASVERGFAEALAHLGRLDGVVHYA 85
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-06
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK--------AERAAKSAGMAKE-- 136
ITGA+ G G A A +A G II + +++ + +
Sbjct: 14 AFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN 72
Query: 137 -NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVG 194
+D D +R+ VD GR LD++V NA V T E F +
Sbjct: 73 RRIVAAVVDTRDFDRLRKVVDDGVAALGR-LDIIVANAGV-AAPQAWDDITPEDFRDVMD 130
Query: 195 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N G + + + +I++ S G
Sbjct: 131 INVTGTWNTVMAGAPRIIEGGR-GGSIILISSAAG 164
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 65 TMATASPAVDVSSPQGKKTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLK 123
+M + + G L+ V++T A+ +G+G TA+ G ++++ +
Sbjct: 4 SMNLSEAPKE---IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERR 59
Query: 124 AERAAKS-AGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNA 172
A + + D+ S ++V + T ++GR LDVLV NA
Sbjct: 60 LGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGR-LDVLVNNA 109
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 47/204 (23%), Positives = 73/204 (35%), Gaps = 36/204 (17%)
Query: 59 GVVRAQTMATASPAVDVSSPQGKKTLRKGS---------VIITGASSGLGLATAKALAET 109
G + AQT S V +G+ ITGA+ G G A LA+
Sbjct: 10 GTLEAQTQGPGSMVDPVRRSTRVSARGQGARMNRLQGKVAFITGAARGQGRTHAVRLAQD 69
Query: 110 GKWHIIMA--CRDFLKAERAAKSAGMAKENYTI------------MHLDLASLDSVRQFV 155
G I+ CR + A S KE T+ D+ L S++ V
Sbjct: 70 GA-DIVAIDLCRQQPNLDYAQGSPEELKE--TVRLVEEQGRRIIARQADVRDLASLQAVV 126
Query: 156 D-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL-KQ 213
D G +D+LV N + + + T + + + TN +G + R +L + ++
Sbjct: 127 DEALAEFGH-IDILVSNVGI-SNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER 184
Query: 214 SDYPSKRLIIVGSITGNTNTLAGN 237
+I V S G L G
Sbjct: 185 GQ--GGSVIFVSSTVG----LRGA 202
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} Length = 422 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 13/143 (9%)
Query: 73 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132
+ + +G + V++ GASSG GLA+ A + + A +AG
Sbjct: 48 IAATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAG 107
Query: 133 MAKENYTI------------MHLDLASLDSVRQFVDTFR-RSGRPLDVLVCNAAVYLPTA 179
++ D S + Q ++ + G +D++V + A +
Sbjct: 108 WYNSAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKL 167
Query: 180 KEPTFTAEGFELSVGTNHLGHFL 202
+G + +
Sbjct: 168 PGSGEVKRSALKPIGQTYTATAI 190
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 41/171 (23%), Positives = 59/171 (34%), Gaps = 34/171 (19%)
Query: 89 VIITGASSGLGLATAKALAETG---------KWHIIMACRDFLKAERAA---KSAG-MAK 135
VI+TGA G+G A A A A G A+ +AG A
Sbjct: 30 VIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAV 89
Query: 136 ENYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFEL 191
+ + ++A D + T G LDVLV NA + ++ + E F+
Sbjct: 90 ADGS----NVADWDQAAGLIQTAVETFGG-LDVLVNNAGI----VRDRMIANTSEEEFDA 140
Query: 192 SVGTNHLGHFLLSR----LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + GHF R K R+I S G L G+V
Sbjct: 141 VIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG----LQGSV 187
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 28/165 (16%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIM--ACRDFLKAERAAKSAGMAKENYTI------ 140
+ITG + G+G + A ALAE G I + C + +A E T+
Sbjct: 13 ALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAE--TVALVEKT 69
Query: 141 ------MHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 193
+D+ ++ FV G +D+ + NA + A P + ++ +
Sbjct: 70 GRRCISAKVDVKDRAALESFVAEAEDTLGG-IDIAITNAGI-STIALLPEVESAQWDEVI 127
Query: 194 GTNHLGHFLLSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAGN 237
GTN G F + + K++ R++ V S+ G + N
Sbjct: 128 GTNLTGTFNTIAAVAPGMIKRN---YGRIVTVSSMLG----HSAN 165
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* Length = 496 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 47 ALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKAL 106
A+R ++R + A S GSV++TG + G+G A+ L
Sbjct: 211 AIRGSGVLARR--LAHAAPAVPGSGKRPPVH---------GSVLVTGGTGGIGGRVARRL 259
Query: 107 AETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSGR 163
AE G H+++ R A AA+ ++ TI D A +++ +
Sbjct: 260 AEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED-A 318
Query: 164 PLDVLVCNAAVYLPTAKEPTFTAEGFE 190
PL + +A V A T +
Sbjct: 319 PLTAVFHSAGVAHDDAPVADLTLGQLD 345
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 89 VIITGASSGLGLATAKALAETG--------KWHIIMACRDFLKAERAA---KSAG-MAKE 136
VIITGA GLG + A+ G + + A+ G +A
Sbjct: 11 VIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVA 70
Query: 137 NYTIMHLDLASLDS-VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELS 192
+Y ++ D V V F G + V++ NA + ++ + T + ++L
Sbjct: 71 DYN----NVLDGDKIVETAVKNF---GT-VHVIINNAGI----LRDASMKKMTEKDYKLV 118
Query: 193 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + G F +++ ++ Y R++ S G L GN
Sbjct: 119 IDVHLNGAFAVTKAAWPYFQKQKYG--RIVNTSSPAG----LYGNF 158
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHL 143
S +ITG G GL A+ L G +++ R ++ A+ + +
Sbjct: 1885 KSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTS 1944
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV-----GTNHL 198
+ +SLD R + + G P+ + N A+ L A T E F+ GT +L
Sbjct: 1945 NASSLDGARSLITEATQLG-PVGGVF-NLAMVLRDAVLENQTPEFFQDVSKPKYSGTANL 2002
Query: 199 GHFLLSRLLLDDL 211
++R +L
Sbjct: 2003 -D-RVTREACPEL 2013
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 89 VIITGASSGLGLATAKALAETG--------KWHIIMACRDFLKAERAA---KSAG-MAKE 136
V++TGA GLG A A A AE G + A++ + G A
Sbjct: 12 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVA 71
Query: 137 NYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195
NY S+++ + V T GR +DV+V NA + L + E +++
Sbjct: 72 NY-------DSVEAGEKLVKTALDTFGR-IDVVVNNAGI-LRDRSFSRISDEDWDIIQRV 122
Query: 196 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ G F ++R D +K+ +Y R+I+ S +G + GN
Sbjct: 123 HLRGSFQVTRAAWDHMKKQNYG--RIIMTASASG----IYGNF 159
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 399 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 100.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 100.0 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.98 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.98 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.97 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.97 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.97 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.97 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.97 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.97 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.97 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.96 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.95 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.94 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.93 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.93 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.92 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.91 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.9 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.9 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.9 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.9 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.89 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.89 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.89 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.88 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.88 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.88 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.88 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.88 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.88 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.88 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.87 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.87 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.87 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.87 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.87 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.86 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.86 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.86 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.86 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.86 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.86 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.86 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.85 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.85 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.85 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.85 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.85 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.85 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.85 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.85 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.85 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.85 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.84 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.84 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.84 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.84 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.84 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.84 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.84 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.83 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.83 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.83 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.83 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.82 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.82 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.82 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.82 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.82 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.81 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.81 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.81 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.81 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.8 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.8 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.8 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.78 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.78 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.78 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.78 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.77 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.77 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.76 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.74 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.74 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.74 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.74 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.72 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.71 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.71 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.67 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.65 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.65 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.63 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.62 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.62 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.61 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.61 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.55 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.54 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.54 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.51 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.47 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.36 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.35 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.02 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.92 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.75 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.66 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.62 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.56 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.54 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.49 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.44 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.43 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.43 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.42 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.32 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.28 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.22 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.16 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.14 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.12 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.1 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.1 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 98.09 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.09 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 98.08 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.07 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.06 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.04 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.03 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.01 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.91 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.9 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.89 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.83 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.83 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.74 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.74 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.73 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.73 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.71 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.69 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.69 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.63 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.61 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.59 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.59 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.58 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.57 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.54 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.51 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.5 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.49 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.44 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.44 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.4 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.36 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.36 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.34 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.32 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.28 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.26 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.24 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.2 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 97.17 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.16 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.15 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.12 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.09 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.08 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.06 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.05 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.05 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.0 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.98 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.84 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.81 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.8 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.78 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.78 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.77 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.77 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.73 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.68 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.65 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.62 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.61 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.58 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.58 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.56 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.51 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.5 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.47 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.46 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.42 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.41 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.41 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.39 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.36 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.34 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.33 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.32 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.31 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.29 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.28 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.28 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.27 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.26 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.25 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.24 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.22 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.19 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.15 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.09 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.08 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.07 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.06 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.05 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.99 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.9 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.83 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.83 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.81 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.76 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.72 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.72 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.71 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.6 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.56 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.52 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.5 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.47 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.42 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.39 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.38 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.33 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.29 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.29 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.2 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.1 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.05 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.03 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 94.96 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.72 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 94.68 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.62 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.57 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.55 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 94.51 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.49 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.48 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 94.44 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.32 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 94.31 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.31 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 94.3 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 94.29 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 94.28 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 94.24 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 94.24 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.23 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 94.21 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 94.17 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 94.11 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.1 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.07 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.06 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.03 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 93.87 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 93.87 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 93.87 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.87 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 93.85 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 93.82 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.67 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 93.62 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 93.6 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 93.5 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 93.43 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 93.42 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 93.4 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 93.3 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 93.27 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.26 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 93.26 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 93.22 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 93.15 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-54 Score=388.99 Aligned_cols=247 Identities=17% Similarity=0.154 Sum_probs=220.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.++++..+.++.+++||++|+++++++++++.++
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 9999999999999999999888889999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+.....++.+++.++|+++|++|+.|+|+++|+++|+|++++ .|+|||+||.++..
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~~g~~---------- 149 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGIR---------- 149 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC----------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhcC----------
Confidence 999999999999875567788999999999999999999999999999999876 58999999999885
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++..+|++||+|+.+|+|+||.|| +++|||||+|+||+|+|++......+..
T Consensus 150 -------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~ 203 (254)
T 4fn4_A 150 -------------------------GGFAGAPYTVAKHGLIGLTRSIAAHY-GDQGIRAVAVLPGTVKTNIGLGSSKPSE 203 (254)
T ss_dssp -------------------------SSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSCTTSCSSCCH
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCCCCcccccccCCcH
Confidence 44677899999999999999999999 6779999999999999996544333322
Q ss_pred hhhchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........ ..+.+|+.+|||+|+.++||+|+.+.++||+.|.+||.
T Consensus 204 ~~~~~~~~~~~~~~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG 250 (254)
T 4fn4_A 204 LGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGG 250 (254)
T ss_dssp HHHHHHHHHHTTCCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCC
Confidence 22222222 23568999999999999999999999999999999995
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-53 Score=382.53 Aligned_cols=247 Identities=17% Similarity=0.139 Sum_probs=220.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.+++||++|+++++++++++.+
T Consensus 4 ~f~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4579999999999999999999999999997 999999999999999999988888999999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||+||||||+. ...++.+++.++|++++++|+.|+|+++|+++|+|.+++. +|+|||+||.++..
T Consensus 83 ~~G~iDiLVNNAG~~-~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-~G~IVnisS~~~~~--------- 151 (255)
T 4g81_D 83 EGIHVDILINNAGIQ-YRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNS-GGKIINIGSLTSQA--------- 151 (255)
T ss_dssp TTCCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS---------
T ss_pred HCCCCcEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC-CCEEEEEeehhhcC---------
Confidence 999999999999997 5578889999999999999999999999999999976532 58999999999875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|+.+|+|+||.|| +++|||||+|+||+|+|++... ....
T Consensus 152 --------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~-~~~~ 203 (255)
T 4g81_D 152 --------------------------ARPTVAPYTAAKGGIKMLTCSMAAEW-AQFNIQTNAIGPGYILTDMNTA-LIED 203 (255)
T ss_dssp --------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGHH-HHTC
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCCchhhc-ccCC
Confidence 44678899999999999999999999 6779999999999999985432 2221
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........|++|+.+|||+|+.++||+|+.+.++||+.|.+||.
T Consensus 204 ~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 204 KQFDSWVKSSTPSQRWGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence 22223345577899999999999999999999999999999999995
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=372.18 Aligned_cols=240 Identities=22% Similarity=0.220 Sum_probs=210.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|| +|++++|+.+.+++..+++ +.++..++||++|+++++++++++.+++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999997 9999999999888888776 4678899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||+. ...++.+++.++|+++|++|+.|+|+++|+++|+|++ .|+||++||.++..
T Consensus 102 G~iDiLVNNAG~~-~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~----~G~IInisS~~~~~----------- 165 (273)
T 4fgs_A 102 GRIDVLFVNAGGG-SMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR----GSSVVLTGSTAGST----------- 165 (273)
T ss_dssp SCEEEEEECCCCC-CCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCCCC-CCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh----CCeEEEEeehhhcc-----------
Confidence 9999999999986 5678889999999999999999999999999999976 37999999999875
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch---
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--- 319 (399)
+.++...|++||+|+.+|+|+|+.|| ++.|||||+|+||+|+|+++......
T Consensus 166 ------------------------~~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~ 220 (273)
T 4fgs_A 166 ------------------------GTPAFSVYAASKAALRSFARNWILDL-KDRGIRINTLSPGPTETTGLVELAGKDPV 220 (273)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSCEEEEEEEECSBCC---------CHH
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHhhccCch
Confidence 45678899999999999999999999 67899999999999999976442211
Q ss_pred -hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............|++|+.+|||+|+.++||+|+.+.++||+.|.+||.
T Consensus 221 ~~~~~~~~~~~~~PlgR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 221 QQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAELFVDGG 269 (273)
T ss_dssp HHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence 112223345567899999999999999999999999999999999995
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-51 Score=367.27 Aligned_cols=239 Identities=16% Similarity=0.179 Sum_probs=205.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++|+||++|||||++|||+++|+.|+++|| +|++++|+.. ++..+++...+.++.+++||++|+++++++++
T Consensus 5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~----- 76 (247)
T 4hp8_A 5 FSLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFT----- 76 (247)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSST-----
T ss_pred cCCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH-----
Confidence 579999999999999999999999999997 9999999854 34455566667889999999999999887764
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++||+||||||+. ...++.+++.++|+++|++|+.|+|+++|+++|+|++++. +|+|||+||.++..
T Consensus 77 ~g~iDiLVNNAGi~-~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~-~G~IVnisS~~~~~---------- 144 (247)
T 4hp8_A 77 DAGFDILVNNAGII-RRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGR-SGKVVNIASLLSFQ---------- 144 (247)
T ss_dssp TTCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred hCCCCEEEECCCCC-CCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-CcEEEEEechhhCC----------
Confidence 47999999999997 4578889999999999999999999999999999987642 58999999999885
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|+.+|+|+||.|| +++|||||+|+||+|+|++... .....
T Consensus 145 -------------------------g~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~~~~~-~~~~~ 197 (247)
T 4hp8_A 145 -------------------------GGIRVPSYTAAKHGVAGLTKLLANEW-AAKGINVNAIAPGYIETNNTEA-LRADA 197 (247)
T ss_dssp -------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHH-HHTSH
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCcchhh-cccCH
Confidence 44677899999999999999999999 6779999999999999986532 22212
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+.|++|+.+|||+|..++||+|+.+.|+||+.|.+||.
T Consensus 198 ~~~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 198 ARNKAILERIPAGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGG 243 (247)
T ss_dssp HHHHHHHTTCTTSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECcc
Confidence 2223345567889999999999999999999999999999999995
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=363.41 Aligned_cols=243 Identities=19% Similarity=0.168 Sum_probs=205.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.+..+ ..+++...+.++.+++||++|+++++++++++.++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 9999999876543 33445555678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ....+ +.+.++|++++++|+.|+|+++|+++|+|++++ |+|||+||.++..
T Consensus 81 ~G~iDiLVNnAGi~-~~~~~-~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~---G~IVnisS~~~~~---------- 145 (258)
T 4gkb_A 81 FGRLDGLVNNAGVN-DGIGL-DAGRDAFVASLERNLIHYYAMAHYCVPHLKATR---GAIVNISSKTAVT---------- 145 (258)
T ss_dssp HSCCCEEEECCCCC-CCCCT-TSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTHHHH----------
T ss_pred hCCCCEEEECCCCC-CCCCc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CeEEEEeehhhcc----------
Confidence 99999999999986 33344 789999999999999999999999999998753 8999999999875
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch--
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 319 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-- 319 (399)
+.++...|++||+|+.+|+|++|.|+ +++|||||+|+||+|+|++.......
T Consensus 146 -------------------------~~~~~~~Y~asKaav~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~ 199 (258)
T 4gkb_A 146 -------------------------GQGNTSGYCASKGAQLALTREWAVAL-REHGVRVNAVIPAEVMTPLYRNWIATFE 199 (258)
T ss_dssp -------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCSCC--------
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCChhHhhhhhccc
Confidence 44678899999999999999999999 67799999999999999965432111
Q ss_pred -hhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -LFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.|+ +|+.+|||+|+.++||+|+.+.++||+.|.+||.
T Consensus 200 ~~~~~~~~~~~~~plg~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG 249 (258)
T 4gkb_A 200 DPEAKLAEIAAKVPLGRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGG 249 (258)
T ss_dssp ---CHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ChHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCC
Confidence 11122233445566 5899999999999999999999999999999995
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=355.21 Aligned_cols=230 Identities=19% Similarity=0.169 Sum_probs=197.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++||++|||||++|||+++|+.|+++|+ +|++++|+.+.++. ..+.++..++||++|+++++++++ ++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~------~~~~~~~~~~~Dv~~~~~v~~~~~----~~g 77 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHA------PRHPRIRREELDITDSQRLQRLFE----ALP 77 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTS------CCCTTEEEEECCTTCHHHHHHHHH----HCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhh------hhcCCeEEEEecCCCHHHHHHHHH----hcC
Confidence 5899999999999999999999999997 99999998765432 234678999999999999988775 479
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+||+||||||+.. ++.+++.++|+++|++|+.|+|+++|+++|+|+++ +|+|||+||+++..
T Consensus 78 ~iDiLVNNAGi~~---~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~~------------ 139 (242)
T 4b79_A 78 RLDVLVNNAGISR---DREEYDLATFERVLRLNLSAAMLASQLARPLLAQR---GGSILNIASMYSTF------------ 139 (242)
T ss_dssp CCSEEEECCCCCC---GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---CEEEEEECCGGGTS------------
T ss_pred CCCEEEECCCCCC---CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCeEEEEeeccccC------------
Confidence 9999999999853 45688999999999999999999999999999875 48999999999885
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.++...|++||+|+.+|+|+|+.|| +++|||||+|+||+|+|+|... .......
T Consensus 140 -----------------------~~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~m~~~-~~~~~~~ 194 (242)
T 4b79_A 140 -----------------------GSADRPAYSASKGAIVQLTRSLACEY-AAERIRVNAIAPGWIDTPLGAG-LKADVEA 194 (242)
T ss_dssp -----------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCC------CCCHHH
T ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCCChhhhc-ccCCHHH
Confidence 44678899999999999999999999 6779999999999999996543 2222233
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
......+.|++|+.+|||+|+.++||+|+.+.++||+.|.+||.
T Consensus 195 ~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 195 TRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcc
Confidence 34456678899999999999999999999999999999999995
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-48 Score=349.10 Aligned_cols=227 Identities=19% Similarity=0.188 Sum_probs=200.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||+++|+.|+++|+ +|++++|+++.++++.+ .+.++.+++||++|+++++++++++.+++|+|
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAK----ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT----TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999996 99999999877665543 34678999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||+. ...++.+++.++|+++|++|+.|+|+++|+++|+|++++ |+|||+||.++..
T Consensus 77 DiLVNNAG~~-~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~---G~IInisS~~~~~-------------- 138 (247)
T 3ged_A 77 DVLVNNACRG-SKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK---GRIINIASTRAFQ-------------- 138 (247)
T ss_dssp CEEEECCCCC-CCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECCGGGTS--------------
T ss_pred CEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CcEEEEeeccccc--------------
Confidence 9999999986 557888999999999999999999999999999998764 8999999999875
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|++||+|+.+|+|+||.|| ++ |||||+|+||+|+|++... . ..
T Consensus 139 ---------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~-~IrVN~I~PG~i~t~~~~~-~------~~ 188 (247)
T 3ged_A 139 ---------------------SEPDSEAYASAKGGIVALTHALAMSL-GP-DVLVNCIAPGWINVTEQQE-F------TQ 188 (247)
T ss_dssp ---------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TT-TSEEEEEEECSBCCCC----C------CH
T ss_pred ---------------------CCCCCHHHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEecCcCCCCCcHH-H------HH
Confidence 45678899999999999999999999 56 9999999999999985422 1 12
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
......|++|+.+|||+|++++||+++ .++||+.|.+||.
T Consensus 189 ~~~~~~Pl~R~g~pediA~~v~fL~s~--~~iTG~~i~VDGG 228 (247)
T 3ged_A 189 EDCAAIPAGKVGTPKDISNMVLFLCQQ--DFITGETIIVDGG 228 (247)
T ss_dssp HHHHTSTTSSCBCHHHHHHHHHHHHHC--SSCCSCEEEESTT
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHHhC--CCCCCCeEEECcC
Confidence 344567889999999999999999985 4899999999995
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=351.89 Aligned_cols=245 Identities=14% Similarity=0.120 Sum_probs=213.4
Q ss_pred ccccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
+++|+||++|||||+| |||+++|+.|+++|+ +|++++|+++.++++.+.+... +.++.+++||++|++++++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHH
Confidence 4689999999999875 999999999999997 9999999998888888877654 45789999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
+.+++|++|+||||||+... ...+.+.+.++|+.++++|+.+++.+++.+.+.+++ +|+||++||.++..
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~----~G~IVnisS~~~~~--- 152 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE----GGSIVATTYLGGEF--- 152 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT----CEEEEEEECGGGTS---
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCEEEEEecccccc---
Confidence 99999999999999998632 234557788999999999999999999999887754 48999999999875
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.++...|++||+|+.+|+++|+.|| +++|||||+|+||+|+|++..
T Consensus 153 --------------------------------~~~~~~~Y~asKaal~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~ 199 (256)
T 4fs3_A 153 --------------------------------AVQNYNVMGVAKASLEANVKYLALDL-GPDNIRVNAISAGPIRTLSAK 199 (256)
T ss_dssp --------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGT
T ss_pred --------------------------------CcccchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCCCCChhhh
Confidence 45778899999999999999999999 677999999999999998543
Q ss_pred cccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. .............+.|++|+.+|||+|+.++||+|+.+.++||+.|.+||.
T Consensus 200 ~-~~~~~~~~~~~~~~~Pl~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 200 G-VGGFNTILKEIKERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp T-CTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred h-ccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 3 222233344556678899999999999999999999999999999999995
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-48 Score=352.10 Aligned_cols=239 Identities=17% Similarity=0.185 Sum_probs=201.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++|+||++|||||++|||+++|+.|+++|+ +|++++|+.++ ...+..+++||++|+++++++++++.+
T Consensus 6 l~~L~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (261)
T 4h15_A 6 FLNLRGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE----------GLPEELFVEADLTTKEGCAIVAEATRQ 74 (261)
T ss_dssp CCCCTTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT----------TSCTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh----------CCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999996 99999997532 112335789999999999999999999
Q ss_pred cCCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++|+||+||||||+... ..++.+++.++|+++|++|+.|+++++|+++|+|++++ .|+||++||..+..+.
T Consensus 75 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Iv~isS~~~~~~~------ 146 (261)
T 4h15_A 75 RLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG--SGVVVHVTSIQRVLPL------ 146 (261)
T ss_dssp HTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC------
T ss_pred HcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC--CceEEEEEehhhccCC------
Confidence 99999999999998543 35678899999999999999999999999999999876 5899999999887521
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
..+...|++||+|+.+|+++|+.|| +++|||||+|+||+|+|++.......
T Consensus 147 ----------------------------~~~~~~Y~asKaal~~lt~~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~ 197 (261)
T 4h15_A 147 ----------------------------PESTTAYAAAKAALSTYSKAMSKEV-SPKGVRVVRVSPGWIETEASVRLAER 197 (261)
T ss_dssp ----------------------------TTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHHHH
T ss_pred ----------------------------CCccHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeCCCcCCcchhhhhHH
Confidence 1256789999999999999999999 67799999999999999854321111
Q ss_pred -----------hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -----------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -----------~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..+.........|++|+.+|||+|+.++||+|+.+.++||+.|.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 198 LAKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp HHHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 011122233456789999999999999999999999999999999995
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=336.05 Aligned_cols=250 Identities=22% Similarity=0.190 Sum_probs=212.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++++|++|+++++++++++.+
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999996 999999999999999888887788999999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++...
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~~-------- 171 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG--GGAIVVVSSINGTRT-------- 171 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTTB--------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CceEEEEcChhhccC--------
Confidence 9999999999999865556788899999999999999999999999999998865 589999999887631
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++........
T Consensus 172 -------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 225 (283)
T 3v8b_A 172 -------------------------FTTPGATAYTATKAAQVAIVQQLALEL-GKHHIRVNAVCPGAIETNISDNTKLRH 225 (283)
T ss_dssp -------------------------CCSTTCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECSBSSCTTCCTTBCC
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCcCCccccccccc
Confidence 133567899999999999999999999 677999999999999998654321111
Q ss_pred hh-h---hchhhHHHHh--cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FR-L---LFPPFQKYIT--KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~-~---~~~~~~~~~~--~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. . ........+. +++.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 226 ~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 278 (283)
T 3v8b_A 226 EEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGG 278 (283)
T ss_dssp HHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred chhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcC
Confidence 10 0 1112223344 7889999999999999999999999999999985
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=336.85 Aligned_cols=248 Identities=20% Similarity=0.186 Sum_probs=214.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++...+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (280)
T 3tox_A 4 SRLEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRR 82 (280)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 9999999999999988888777788999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 83 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 150 (280)
T 3tox_A 83 FGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG--GGSLTFTSSFVGHT---------- 150 (280)
T ss_dssp HSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCSBTTT----------
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhCc----------
Confidence 999999999999875556777889999999999999999999999999999875 58999999988762
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++.........
T Consensus 151 ------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~~ 205 (280)
T 3tox_A 151 ------------------------AGFAGVAPYAASKAGLIGLVQALAVEL-GARGIRVNALLPGGTDTPANFANLPGAA 205 (280)
T ss_dssp ------------------------BCCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBSSTTSGGGSTTCC
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCCCCchhhhhccccC
Confidence 134677899999999999999999999 6779999999999999986543221111
Q ss_pred -hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 -RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 -~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 206 ~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 252 (280)
T 3tox_A 206 PETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGG 252 (280)
T ss_dssp THHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhccCccCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCC
Confidence 1111122234567889999999999999999989999999999995
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=333.47 Aligned_cols=247 Identities=20% Similarity=0.258 Sum_probs=214.9
Q ss_pred CccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHHH
Q 015844 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 80 ~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.++++++|++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++...+ .++.++.||++|+++++++++++
T Consensus 4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999996 99999999999888888886655 68999999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.++++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||..+..
T Consensus 83 ~~~~g~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~------- 152 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVF-PDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG--SGRVVLTSSITGPI------- 152 (262)
T ss_dssp HHHHSCCSEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS--SCEEEEECCSBTTT-------
T ss_pred HHHhCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEechhhcc-------
Confidence 99999999999999987 446778899999999999999999999999999998865 47999999988752
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.....
T Consensus 153 ---------------------------~~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~- 203 (262)
T 3pk0_A 153 ---------------------------TGYPGWSHYGATKAAQLGFMRTAAIEL-APHKITVNAIMPGNIMTEGLLENG- 203 (262)
T ss_dssp ---------------------------BCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHTTC-
T ss_pred ---------------------------CCCCCChhhHHHHHHHHHHHHHHHHHH-HhhCcEEEEEEeCcCcCccccccC-
Confidence 134677899999999999999999999 667999999999999998553321
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
+ ..........+.+++.+|+|+|+.++||+++++.+++|+.|.+||..
T Consensus 204 ~--~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~ 251 (262)
T 3pk0_A 204 E--EYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQ 251 (262)
T ss_dssp H--HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred H--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCe
Confidence 1 11222333456788999999999999999999999999999999853
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=332.65 Aligned_cols=243 Identities=18% Similarity=0.165 Sum_probs=212.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999996 9999999998888888888777788999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++ +.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 87 ~g~id~lv~nAg~~~-~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 152 (256)
T 3gaf_A 87 FGKITVLVNNAGGGG-PKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG--GGAILNISSMAGEN---------- 152 (256)
T ss_dssp HSCCCEEEECCCCCC-CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTC----------
T ss_pred cCCCCEEEECCCCCC-CCCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHHcC----------
Confidence 999999999999874 3455 789999999999999999999999999998875 58999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++......+
T Consensus 153 -------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~-- 204 (256)
T 3gaf_A 153 -------------------------TNVRMASYGSSKAAVNHLTRNIAFDV-GPMGIRVNAIAPGAIKTDALATVLTP-- 204 (256)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHCCH--
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEEccccCchhhhccCH--
Confidence 44677899999999999999999999 66799999999999999854322111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 205 ~~~~~~~~~~p~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG 250 (256)
T 3gaf_A 205 EIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGG 250 (256)
T ss_dssp HHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCC
Confidence 1112223345678899999999999999999988999999999985
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=332.51 Aligned_cols=246 Identities=17% Similarity=0.153 Sum_probs=211.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-C-CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-A-KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++.. . +.++.++.||++|+++++++++++.
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999999996 899999999888888877754 3 3358999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||..+..
T Consensus 83 ~~~g~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 151 (265)
T 3lf2_A 83 RTLGCASILVNNAGQG-RVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRA--DAAIVCVNSLLASQ-------- 151 (265)
T ss_dssp HHHCSCSEEEECCCCC-CCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTST--TEEEEEEEEGGGTS--------
T ss_pred HHcCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CeEEEEECCcccCC--------
Confidence 9999999999999986 456777899999999999999999999999999998865 58999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||+|+++|++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 152 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~ 203 (265)
T 3lf2_A 152 ---------------------------PEPHMVATSAARAGVKNLVRSMAFEF-APKGVRVNGILIGLVESGQWRRRFEA 203 (265)
T ss_dssp ---------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHTC
T ss_pred ---------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCcCchhhhhhhh
Confidence 44678899999999999999999999 66799999999999999854321110
Q ss_pred ------hhhhhchhhHH---HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 ------LFRLLFPPFQK---YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ------~~~~~~~~~~~---~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....+...... .|.+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 260 (265)
T 3lf2_A 204 REERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGG 260 (265)
T ss_dssp ------CHHHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSS
T ss_pred hhhhccCHHHHHHHHhhccCCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCC
Confidence 11111222222 6778899999999999999999999999999999995
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=331.88 Aligned_cols=248 Identities=17% Similarity=0.181 Sum_probs=212.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.|++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999996 99999999999999988888777889999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|.+.+. .|+||++||..+..
T Consensus 82 g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 148 (257)
T 3imf_A 82 GRIDILINNAAGN-FICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGI-KGNIINMVATYAWD----------- 148 (257)
T ss_dssp SCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC-CcEEEEECchhhcc-----------
Confidence 9999999999986 4467778899999999999999999999999999954431 48999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+|+++|++.++.|+..+.||+||+|+||+|+|++..........
T Consensus 149 ------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~ 204 (257)
T 3imf_A 149 ------------------------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEE 204 (257)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------C
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHH
Confidence 34677899999999999999999998425699999999999999865432111111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.........+.+++.+|||+|+.++||+++.+.+++|+.|.+||..
T Consensus 205 ~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 250 (257)
T 3imf_A 205 MAKRTIQSVPLGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQ 250 (257)
T ss_dssp CSHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCc
Confidence 1122233456788999999999999999999899999999999953
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=329.52 Aligned_cols=243 Identities=16% Similarity=0.134 Sum_probs=212.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++|++|||||++|||+++|++|+++|+ +|+++ +|+.+..++..+++...+.++.++.+|++|+++++++++++.+.++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999996 77775 8998888888888877778899999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 82 ~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~------------ 146 (258)
T 3oid_A 82 RLDVFVNNAASG-VLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG--GGHIVSISSLGSIR------------ 146 (258)
T ss_dssp CCCEEEECCCCC-CCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEEEEGGGTS------------
T ss_pred CCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhCC------------
Confidence 999999999986 445677889999999999999999999999999999875 58999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++... .......
T Consensus 147 -----------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~-~~~~~~~ 201 (258)
T 3oid_A 147 -----------------------YLENYTTVGVSKAALEALTRYLAVEL-SPKQIIVNAVSGGAIDTDALKH-FPNREDL 201 (258)
T ss_dssp -----------------------BCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECCBCSGGGGG-CTTHHHH
T ss_pred -----------------------CCCCcHHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcChhhhh-cccCHHH
Confidence 34677899999999999999999999 5679999999999999985533 2222222
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
........+.+++.+|+|+|+.++||+++.+.++||+.|.+||..
T Consensus 202 ~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~ 246 (258)
T 3oid_A 202 LEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGR 246 (258)
T ss_dssp HHHHHHHCTTSSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTG
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 333445667788999999999999999999999999999999953
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=334.77 Aligned_cols=246 Identities=17% Similarity=0.161 Sum_probs=215.7
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|+++++++++++.+
T Consensus 21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp GGCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999996 999999999998888888877778899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 100 ~~g~iD~lv~nAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iV~isS~~~~~--------- 167 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQ-FRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG--YGKIVNIGSLTSEL--------- 167 (271)
T ss_dssp HTCCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred HCCCCCEEEECCCCC-CCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhCC---------
Confidence 999999999999986 446677889999999999999999999999999998865 48999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++... ....
T Consensus 168 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~-~~~~ 219 (271)
T 4ibo_A 168 --------------------------ARATVAPYTVAKGGIKMLTRAMAAEW-AQYGIQANAIGPGYMLTDMNQA-LIDN 219 (271)
T ss_dssp --------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHH-HHHC
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeccEeCcchhh-cccC
Confidence 34677899999999999999999999 5679999999999999985432 2111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 220 ~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG 266 (271)
T 4ibo_A 220 PEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGG 266 (271)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEEEECCC
Confidence 12222334456778899999999999999999989999999999995
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=334.55 Aligned_cols=247 Identities=18% Similarity=0.182 Sum_probs=208.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC------------hHHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
.++++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+++...+.++.++.||++|++
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 368899999999999999999999999996 99998886 66777777777777788999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
+++++++++.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||.++
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~Iv~isS~~~ 181 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKR-GGSIVFTSSIGG 181 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECChhh
Confidence 9999999999999999999999999755555788999999999999999999999999999877542 489999999988
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
.. +.++...|++||+|+++|++.++.|+ ++.||+||+|+||+|+
T Consensus 182 ~~-----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~ 225 (299)
T 3t7c_A 182 LR-----------------------------------GAENIGNYIASKHGLHGLMRTMALEL-GPRNIRVNIVCPSSVA 225 (299)
T ss_dssp TS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBS
T ss_pred cc-----------------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCcc
Confidence 74 44677899999999999999999999 6679999999999999
Q ss_pred CCCCccccch----------hhhhhc---hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 310 TTGLFREHIP----------LFRLLF---PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 310 T~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|++....... ...... ......+ +++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 226 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 295 (299)
T 3t7c_A 226 TPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLP-IPYVEPADISNAILFLVSDDARYITGVSLPVDGG 295 (299)
T ss_dssp STTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CccccccchhhhhhhhhccchhhHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCC
Confidence 9965431100 000000 0111122 5688999999999999999999999999999995
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=334.06 Aligned_cols=247 Identities=20% Similarity=0.211 Sum_probs=213.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
++++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++.. .+.++.+++||++|+++++++++++.
T Consensus 15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999996 999999999888888777754 46789999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++. +|+||++||.++..
T Consensus 94 ~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~-------- 163 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISH-PQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGE-GGAIITVASAAALA-------- 163 (266)
T ss_dssp HHHTSCSEEEEECCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS--------
T ss_pred HHcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEEcchhhcc--------
Confidence 99999999999999974 456778899999999999999999999999999987642 47999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++..... .
T Consensus 164 ---------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~-~ 214 (266)
T 4egf_A 164 ---------------------------PLPDHYAYCTSKAGLVMATKVLAREL-GPHGIRANSVCPTVVLTEMGQRVW-G 214 (266)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBCSHHHHHHT-C
T ss_pred ---------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCchhhhhc-c
Confidence 44677899999999999999999999 667999999999999998543211 1
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 215 ~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 4egf_A 215 DEAKSAPMIARIPLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGG 262 (266)
T ss_dssp SHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCC
Confidence 111222334456678899999999999999999999999999999985
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=333.38 Aligned_cols=246 Identities=17% Similarity=0.146 Sum_probs=208.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC----------------hHHHHHHHHHhccCCCcEEEEEecCC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------------FLKAERAAKSAGMAKENYTIMHLDLA 146 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~Dvs 146 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+++...+.++.++.||++
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 67899999999999999999999999996 99999886 66777777777777788999999999
Q ss_pred CHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
|+++++++++++.+.+|++|+||||||+.....++.+.+.++|+++|++|+.|+++++++++|+|.+++. +|+||++||
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS 165 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGR-GGSIILTSS 165 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CcEEEEECc
Confidence 9999999999999999999999999998755445778899999999999999999999999999987542 479999999
Q ss_pred cccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCC
Q 015844 227 ITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 306 (399)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG 306 (399)
..+.. +.++...|++||+|+++|++.++.|+ ++.||+||+|+||
T Consensus 166 ~~~~~-----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG 209 (286)
T 3uve_A 166 VGGLK-----------------------------------AYPHTGHYVAAKHGVVGLMRAFGVEL-GQHMIRVNSVHPT 209 (286)
T ss_dssp GGGTS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEES
T ss_pred hhhcc-----------------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecC
Confidence 98874 44677899999999999999999999 6679999999999
Q ss_pred cccCCCCccccch----------hhhhhc---hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 307 CIATTGLFREHIP----------LFRLLF---PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 307 ~v~T~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+|+|++....... ...... ......+ +++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 210 ~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG 282 (286)
T 3uve_A 210 HVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAG 282 (286)
T ss_dssp SBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccCCcccccchhhhccccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCc
Confidence 9999965431100 000000 0111223 6788999999999999999999999999999995
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=331.24 Aligned_cols=245 Identities=21% Similarity=0.187 Sum_probs=213.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++...+.++.++.||++|+++++++++++.+++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999996 99999999999888888887777889999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ |+||++||..+..
T Consensus 87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 152 (264)
T 3ucx_A 87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK---GAVVNVNSMVVRH----------- 152 (264)
T ss_dssp SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT---CEEEEECCGGGGC-----------
T ss_pred CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEECcchhcc-----------
Confidence 99999999999865566777889999999999999999999999999998764 7999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch---
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--- 319 (399)
+.++...|++||++++.|++.++.|+ .++||+||+|+||+|+|++.......
T Consensus 153 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~ 207 (264)
T 3ucx_A 153 ------------------------SQAKYGAYKMAKSALLAMSQTLATEL-GEKGIRVNSVLPGYIWGGTLKSYFEHQAG 207 (264)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEESSCBSHHHHHHHHHHHH
T ss_pred ------------------------CCCccHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccccHHHHHHhhhh
Confidence 44677899999999999999999999 67799999999999999854321110
Q ss_pred -----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 208 ~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 260 (264)
T 3ucx_A 208 KYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASGITGQALDVNCG 260 (264)
T ss_dssp HTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 011111222344667899999999999999999989999999999985
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=334.83 Aligned_cols=247 Identities=23% Similarity=0.257 Sum_probs=214.7
Q ss_pred CccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHHH
Q 015844 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 80 ~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.++++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+ .++.++.||++|+++++++++++
T Consensus 35 ~m~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 113 (293)
T 3rih_A 35 VMFDLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTV 113 (293)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999996 99999999988888888887665 68999999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 114 ~~~~g~iD~lvnnAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iV~isS~~~~~------- 183 (293)
T 3rih_A 114 VDAFGALDVVCANAGIF-PEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG--RGRVILTSSITGPV------- 183 (293)
T ss_dssp HHHHSCCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS--SCEEEEECCSBTTT-------
T ss_pred HHHcCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEeChhhcc-------
Confidence 99999999999999997 446777899999999999999999999999999998865 48999999988752
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.....
T Consensus 184 ---------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~- 234 (293)
T 3rih_A 184 ---------------------------TGYPGWSHYGASKAAQLGFMRTAAIEL-APRGVTVNAILPGNILTEGLVDMG- 234 (293)
T ss_dssp ---------------------------BBCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHTC-
T ss_pred ---------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEecCCCcCcchhhcc-
Confidence 134577899999999999999999999 567999999999999998543221
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
+ ..........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||..
T Consensus 235 ~--~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~ 282 (293)
T 3rih_A 235 E--EYISGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQ 282 (293)
T ss_dssp H--HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred H--HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 1 11222334456788999999999999999999999999999999964
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-44 Score=330.90 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=213.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCC---cEEEEEecCCCHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~---~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+. ++.++.+|++|+++++++++++
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 468899999999999999999999999996 999999999888888888766544 7899999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------- 156 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGG--GGSFVGISSIAASN------- 156 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCHHHHS-------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEeCHHHcC-------
Confidence 999999999999999855556777889999999999999999999999999998865 58999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.|+ .++||+||+|+||+|+|++... ..
T Consensus 157 ----------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~-~~ 206 (281)
T 3svt_A 157 ----------------------------THRWFGAYGVTKSAVDHLMQLAADEL-GASWVRVNSIRPGLIRTDLVAA-IT 206 (281)
T ss_dssp ----------------------------CCTTCTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHH-HH
T ss_pred ----------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhh-cc
Confidence 34567799999999999999999999 6679999999999999985432 11
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 207 ~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG 255 (281)
T 3svt_A 207 ESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGG 255 (281)
T ss_dssp TCHHHHHHHHHHCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCC
Confidence 1112222334456678899999999999999999888999999999985
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=325.76 Aligned_cols=241 Identities=22% Similarity=0.228 Sum_probs=210.0
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++. .+..++.+|++|+++++++++++.+
T Consensus 4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (248)
T 3op4_A 4 FMNLEGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLG---DNGKGMALNVTNPESIEAVLKAITD 79 (248)
T ss_dssp TTCCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---ccceEEEEeCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999996 99999999988888777764 3578899999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 80 ~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 147 (248)
T 3op4_A 80 EFGGVDILVNNAGITR-DNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR--QGRIINVGSVVGTM--------- 147 (248)
T ss_dssp HHCCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH---------
T ss_pred HcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcC---------
Confidence 9999999999999974 45677889999999999999999999999999998765 58999999998875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++... ..+
T Consensus 148 --------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~-~~~- 198 (248)
T 3op4_A 148 --------------------------GNAGQANYAAAKAGVIGFTKSMAREV-ASRGVTVNTVAPGFIETDMTKA-LND- 198 (248)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSTTTTT-SCH-
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEeeCCCCCchhhh-cCH-
Confidence 34678899999999999999999999 6679999999999999985432 221
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 199 -~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG 244 (248)
T 3op4_A 199 -EQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGG 244 (248)
T ss_dssp -HHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 1122234456678899999999999999999988999999999985
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=331.98 Aligned_cols=246 Identities=18% Similarity=0.177 Sum_probs=212.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++.. .+.++.++.+|++|+++++++++++.+
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 358899999999999999999999999996 999999998887777776643 367899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..
T Consensus 102 ~~g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 169 (277)
T 4fc7_A 102 EFGRIDILINCAAGN-FLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH--GGVIVNITATLGNR--------- 169 (277)
T ss_dssp HHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCSHHHH---------
T ss_pred HcCCCCEEEECCcCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhCC---------
Confidence 999999999999986 445677889999999999999999999999999987764 48999999998875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|+++|++.++.|+ ++.||+||+|+||+|+|++........
T Consensus 170 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~ 222 (277)
T 4fc7_A 170 --------------------------GQALQVHAGSAKAAVDAMTRHLAVEW-GPQNIRVNSLAPGPISGTEGLRRLGGP 222 (277)
T ss_dssp --------------------------TCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSSSHHHHHHSCC
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCEecchhhhhccCC
Confidence 34567899999999999999999999 567999999999999998543322111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 223 ~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG 269 (277)
T 4fc7_A 223 QASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGG 269 (277)
T ss_dssp HHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHHHHHcCCccCCcCCCEEEECCC
Confidence 12233344556778899999999999999999888999999999995
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=328.80 Aligned_cols=247 Identities=18% Similarity=0.228 Sum_probs=207.4
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC------------hHHHHHHHHHhccCCCcEEEEEecCCCH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASL 148 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~ 148 (399)
+.++++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+.+...+.++.++++|++|+
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 83 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDR 83 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 4578999999999999999999999999996 89999997 5566666666666678899999999999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
++++++++++.+.+|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.+
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~ 160 (281)
T 3s55_A 84 AALESFVAEAEDTLGGIDIAITNAGIS-TIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN--YGRIVTVSSML 160 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCC-CCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChh
Confidence 999999999999999999999999987 446777899999999999999999999999999998765 58999999998
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
+.. +.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|
T Consensus 161 ~~~-----------------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v 204 (281)
T 3s55_A 161 GHS-----------------------------------ANFAQASYVSSKWGVIGLTKCAAHDL-VGYGITVNAVAPGNI 204 (281)
T ss_dssp GGS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSB
T ss_pred hcC-----------------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcc
Confidence 874 34577899999999999999999999 567999999999999
Q ss_pred cCCCCcccc-----chh-----hhhhchhh--HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 309 ATTGLFREH-----IPL-----FRLLFPPF--QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 309 ~T~~~~~~~-----~~~-----~~~~~~~~--~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+|++..... .+. .......+ .....+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 205 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG 275 (281)
T 3s55_A 205 ETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAG 275 (281)
T ss_dssp CSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCccccchhhhccccccccccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 999654211 000 00000000 011126788999999999999999989999999999995
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=328.53 Aligned_cols=247 Identities=20% Similarity=0.163 Sum_probs=213.3
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++...+.++.+++||++|+++++++++++.+
T Consensus 27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999996 999999999888888888877777899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.+++. +|+||++||.++..+.
T Consensus 106 ~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-~g~iv~isS~~~~~~~------- 176 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIVS-VQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGL-GGTIITTASMSGHIIN------- 176 (276)
T ss_dssp HHSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSCC-------
T ss_pred HcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECchHhcccC-------
Confidence 9999999999999974 456778899999999999999999999999999987642 3799999999887421
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
..++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++... ...
T Consensus 177 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~-~~~- 227 (276)
T 3r1i_A 177 --------------------------IPQQVSHYCTSKAAVVHLTKAMAVEL-APHQIRVNSVSPGYIRTELVEP-LAD- 227 (276)
T ss_dssp --------------------------CSSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTTGG-GGG-
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCcccc-chH-
Confidence 11356789999999999999999999 5679999999999999985532 211
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.........+.+++.+|+|+|+.++||+++.+.++||+.|.+||..
T Consensus 228 --~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 228 --YHALWEPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGGY 273 (276)
T ss_dssp --GHHHHGGGSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEECcCc
Confidence 1112233456788999999999999999999999999999999953
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=328.94 Aligned_cols=247 Identities=23% Similarity=0.252 Sum_probs=209.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-------------ChHHHHHHHHHhccCCCcEEEEEecCCCH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-------------DFLKAERAAKSAGMAKENYTIMHLDLASL 148 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~ 148 (399)
.++++|++|||||++|||+++|+.|+++|+ +|++++| +.+.+++..+.+...+.++.++.+|++|+
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD 89 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 468999999999999999999999999996 9999988 67778888888877788899999999999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++++. +|+||++||.+
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~ 167 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGVLS-WGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGN-GGSIVVVSSSA 167 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEEcchh
Confidence 9999999999999999999999999974 456778899999999999999999999999999987642 47999999998
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
+.. +.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|
T Consensus 168 ~~~-----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v 211 (280)
T 3pgx_A 168 GLK-----------------------------------ATPGNGHYSASKHGLTALTNTLAIEL-GEYGIRVNSIHPYSV 211 (280)
T ss_dssp GTS-----------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSB
T ss_pred hcc-----------------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcc
Confidence 874 44678899999999999999999999 667999999999999
Q ss_pred cCCCCccccch-------hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 309 ATTGLFREHIP-------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 309 ~T~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
+|++....... ............+. ++.+|+|+|+.++||+++.+.+++|+.|.+||..
T Consensus 212 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 212 ETPMIEPEAMMEIFARHPSFVHSFPPMPVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp CSTTCCHHHHHHHHHHCGGGGGGSCCBTTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred cCcccchhhhhhhhhcCchhhhhhhhcccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 99965431110 00000001112223 5789999999999999999999999999999953
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=330.81 Aligned_cols=243 Identities=22% Similarity=0.207 Sum_probs=211.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999996 9999999998888888887766778899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..
T Consensus 103 ~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 169 (270)
T 3ftp_A 103 FGALNVLVNNAGITQ-DQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR--GGRIVNITSVVGSA---------- 169 (270)
T ss_dssp HSCCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH----------
T ss_pred cCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhCC----------
Confidence 999999999999874 45677889999999999999999999999999998765 58999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++... ..+
T Consensus 170 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~-~~~-- 220 (270)
T 3ftp_A 170 -------------------------GNPGQVNYAAAKAGVAGMTRALAREI-GSRGITVNCVAPGFIDTDMTKG-LPQ-- 220 (270)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHH-SCH--
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCcchhh-cCH--
Confidence 34678899999999999999999999 5679999999999999985422 111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|||+|+.++||+++.+.+++|+.|.+||.
T Consensus 221 ~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 266 (270)
T 3ftp_A 221 EQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGG 266 (270)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCC
Confidence 1111222345667889999999999999999988999999999985
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-44 Score=324.80 Aligned_cols=240 Identities=20% Similarity=0.224 Sum_probs=208.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.||++|+++++++++++.+.+
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQALT 78 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999999999996 9999999998888877766 5678999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++. .|+||++||..+..
T Consensus 79 g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 145 (247)
T 3rwb_A 79 GGIDILVNNASIV-PFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGK-AGRVISIASNTFFA----------- 145 (247)
T ss_dssp SCCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCTHHHH-----------
T ss_pred CCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CcEEEEECchhhcc-----------
Confidence 9999999999997 4567778899999999999999999999999999987642 47999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++.... ...
T Consensus 146 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~-~~~-- 197 (247)
T 3rwb_A 146 ------------------------GTPNMAAYVAAKGGVIGFTRALATEL-GKYNITANAVTPGLIESDGVKAS-PHN-- 197 (247)
T ss_dssp ------------------------TCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTS-GGG--
T ss_pred ------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCcccccc-Chh--
Confidence 34678899999999999999999999 66799999999999999854332 111
Q ss_pred hhchhhHH-HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQK-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~-~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........ .+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 198 ~~~~~~~~~~~~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG 243 (247)
T 3rwb_A 198 EAFGFVEMLQAMKGKGQPEHIADVVSFLASDDARWITGQTLNVDAG 243 (247)
T ss_dssp GGHHHHHHHSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhcccccCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 11112222 4567889999999999999999999999999999985
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=326.76 Aligned_cols=242 Identities=20% Similarity=0.217 Sum_probs=208.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|+++++++++++.+.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999996 9999999988887777766 467889999999999999999999999
Q ss_pred CCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+|++|+||||||+... ...+.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||..+..
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 151 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG--GGAIVNISSATAHA--------- 151 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS---------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCHHHcC---------
Confidence 9999999999998733 45566889999999999999999999999999998875 58999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 152 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~- 203 (271)
T 3tzq_B 152 --------------------------AYDMSTAYACTKAAIETLTRYVATQY-GRHGVRCNAIAPGLVRTPRLEVGLPQ- 203 (271)
T ss_dssp --------------------------BCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTC---CH-
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEEeCCCcCccccccCCH-
Confidence 34677899999999999999999999 66799999999999999965432221
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++.+.++||+.+.+||.
T Consensus 204 -~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 204 -PIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp -HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 1112223345668889999999999999999999999999999995
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=328.78 Aligned_cols=246 Identities=19% Similarity=0.160 Sum_probs=207.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-------------ChHHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-------------DFLKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++| +.+.+++..+.+...+.++.++.+|++|++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 68899999999999999999999999996 9999988 667777777777666788999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
+++++++++.+.++++|+||||||+.. ..++.+.+.++|+++|++|+.|+++++++++|.|.+++. .|+||++||.++
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~ 164 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAA-PQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGR-GGSIILISSAAG 164 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-CCEEEEEccHhh
Confidence 999999999999999999999999974 456778899999999999999999999999999987642 479999999988
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
.. +.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+
T Consensus 165 ~~-----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~ 208 (277)
T 3tsc_A 165 MK-----------------------------------MQPFMIHYTASKHAVTGLARAFAAEL-GKHSIRVNSVHPGPVN 208 (277)
T ss_dssp TS-----------------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBS
T ss_pred CC-----------------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEeCCCc
Confidence 74 34677899999999999999999999 6679999999999999
Q ss_pred CCCCccccchh-------hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 310 TTGLFREHIPL-------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 310 T~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|++........ .......+......++.+|||+|+.++||+++++.++||+.|.+||.
T Consensus 209 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 273 (277)
T 3tsc_A 209 TPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG 273 (277)
T ss_dssp SGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcccchhhhhhhhcccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence 98653211000 00011111111123678999999999999999999999999999995
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=327.79 Aligned_cols=243 Identities=21% Similarity=0.210 Sum_probs=208.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|+++++++++++.+.
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999996 9999999998888877776 467889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 101 ~g~iD~lvnnAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~---------- 167 (277)
T 3gvc_A 101 FGGVDKLVANAGVV-HLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG--GGAIVNLSSLAGQV---------- 167 (277)
T ss_dssp HSSCCEEEECCCCC-CCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcc----------
Confidence 99999999999997 446777889999999999999999999999999998875 58999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--- 318 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 168 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~ 221 (277)
T 3gvc_A 168 -------------------------AVGGTGAYGMSKAGIIQLSRITAAEL-RSSGIRSNTLLPAFVDTPMQQTAMAMFD 221 (277)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHTCC-
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCccCchHHHhhhcch
Confidence 44678899999999999999999999 6679999999999999985422111
Q ss_pred -hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|||+|+.++||+++.+.+++|+.|.+||.
T Consensus 222 ~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 271 (277)
T 3gvc_A 222 GALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGG 271 (277)
T ss_dssp -----CCHHHHHHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhHHHHhhhhhhhccccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCc
Confidence 0111111222256678899999999999999999999999999999995
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-44 Score=330.87 Aligned_cols=245 Identities=21% Similarity=0.206 Sum_probs=208.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999996 99999999999888888887778889999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHH--HHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD--DLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~--~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++| .|++++ .|+||++||.++..
T Consensus 100 g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~--~g~iV~isS~~~~~--------- 167 (279)
T 3sju_A 100 GPIGILVNSAGRN-GGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAG--WGRIVNIASTGGKQ--------- 167 (279)
T ss_dssp CSCCEEEECCCCC-CCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHT--CEEEEEECCGGGTS---------
T ss_pred CCCcEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcC--CcEEEEECChhhcc---------
Confidence 9999999999987 446677889999999999999999999999999 466654 48999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 168 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 220 (279)
T 3sju_A 168 --------------------------GVMYAAPYTASKHGVVGFTKSVGFEL-AKTGITVNAVCPGYVETPMAERVREGY 220 (279)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEESSBCSHHHHHHHHSC
T ss_pred --------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCcccchHHHHHHhhh
Confidence 44677899999999999999999999 5679999999999999985422100
Q ss_pred ------hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 ------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|||+|+.++||+++.+.+++|+.|.+||.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 275 (279)
T 3sju_A 221 ARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGG 275 (279)
T ss_dssp CSSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTT
T ss_pred hhcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 0111111223345678889999999999999999988999999999985
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=327.28 Aligned_cols=244 Identities=18% Similarity=0.182 Sum_probs=203.2
Q ss_pred CcCccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH
Q 015844 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 78 ~~~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
+..++++++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++ +.++.++.+|++|++++++++++
T Consensus 19 ~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~ 94 (266)
T 3grp_A 19 PGSMFKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADL---GKDVFVFSANLSDRKSIKQLAEV 94 (266)
T ss_dssp --CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CSSEEEEECCTTSHHHHHHHHHH
T ss_pred CcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEeecCCHHHHHHHHHH
Confidence 3345678999999999999999999999999996 9999999988887776655 46789999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 95 ~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~Iv~isS~~~~~------ 165 (266)
T 3grp_A 95 AEREMEGIDILVNNAGITR-DGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR--YGRIINITSIVGVV------ 165 (266)
T ss_dssp HHHHHTSCCEEEECCCCC------CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCC----------
T ss_pred HHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcEEEEECCHHHcC------
Confidence 9999999999999999873 45677889999999999999999999999999998765 58999999998874
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++... .
T Consensus 166 -----------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~-~ 214 (266)
T 3grp_A 166 -----------------------------GNPGQTNYCAAKAGLIGFSKALAQEI-ASRNITVNCIAPGFIKSAMTDK-L 214 (266)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHT-C
T ss_pred -----------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCcCCCchhhc-c
Confidence 34678899999999999999999999 5679999999999999985432 2
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+ ..........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 215 ~~--~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 3grp_A 215 NE--KQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGG 262 (266)
T ss_dssp CH--HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 11 1112223345678899999999999999999999999999999985
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=330.80 Aligned_cols=245 Identities=18% Similarity=0.159 Sum_probs=211.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999996 9999999988888888887777788999999999999999999999887
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 108 -g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~---------- 173 (275)
T 4imr_A 108 -APVDILVINASAQI-NATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK--WGRVVSIGSINQLR---------- 173 (275)
T ss_dssp -SCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred -CCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhCC----------
Confidence 89999999999864 45677889999999999999999999999999998765 58999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++.........
T Consensus 174 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~ 227 (275)
T 4imr_A 174 -------------------------PKSVVTAYAATKAAQHNLIQSQARDF-AGDNVLLNTLAPGLVDTDRNADRRAQDP 227 (275)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHHHHHHCH
T ss_pred -------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeccccCcccccccccCh
Confidence 33566789999999999999999999 5679999999999999985432111111
Q ss_pred hhhchhhHHH-HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKY-ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~-~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......... +.+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 228 ~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 228 EGWDEYVRTLNWMGRAGRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred HHHHHHHhhcCccCCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 2222333344 678899999999999999999999999999999984
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=332.89 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=217.7
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+.+ .++..+++......+.++.+|++|+++++++++++.+
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 80 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999 9999999999999995 9999999875 3333333322212478899999999999999999999
Q ss_pred cCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
.++++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|++ +|+||++||..+..
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~------ 150 (275)
T 2pd4_A 81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN----GASVLTLSYLGSTK------ 150 (275)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEEECGGGTS------
T ss_pred HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEEecchhcC------
Confidence 99999999999998642 245667899999999999999999999999999875 37999999988764
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||++++.|++.++.++ ++.||+||+|+||+|+|++... .
T Consensus 151 -----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~-~ 199 (275)
T 2pd4_A 151 -----------------------------YMAHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASSG-I 199 (275)
T ss_dssp -----------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGG-S
T ss_pred -----------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCccccchhhh-c
Confidence 33567789999999999999999999 6779999999999999985422 2
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHHHH
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEK 394 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~~ 394 (399)
..............+.+++.+|+|+|+.++|++++...+++|+++.+||... ...++....|++++++||+++++
T Consensus 200 ~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~~--~~~~~~~~~~~~~~~~lw~~s~~ 274 (275)
T 2pd4_A 200 ADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH--VMGMGAVEEKDNKATLLWDLHKE 274 (275)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG--GBSSCCCTTCTTTTCCHHHHSSC
T ss_pred cccHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc--cCCCChhhcCcccchhhhhhhcc
Confidence 1111111122234566778999999999999999888889999999998632 23456778999999999999875
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=327.31 Aligned_cols=245 Identities=21% Similarity=0.227 Sum_probs=209.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|+++++++++++.+
T Consensus 22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (277)
T 4dqx_A 22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTTA 97 (277)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999996 9999999988887777665 46789999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 98 ~~g~iD~lv~nAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 165 (277)
T 4dqx_A 98 KWGRVDVLVNNAGFG-TTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG--GGSIINTTSYTATS--------- 165 (277)
T ss_dssp HHSCCCEEEECCCCC-CCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT--CEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhCc---------
Confidence 999999999999986 446777889999999999999999999999999998765 58999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.++...|++||+|+++|++.++.|+ .+.||+||+|+||+|+|+++.....
T Consensus 166 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 218 (277)
T 4dqx_A 166 --------------------------AIADRTAYVASKGAISSLTRAMAMDH-AKEGIRVNAVAPGTIDSPYFTKIFAEA 218 (277)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHHTC
T ss_pred --------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCchhhhhcccc
Confidence 44678899999999999999999999 5679999999999999985332111
Q ss_pred -hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 319 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.............+.+++.+|+|+|+.++||+++.+.+++|+.|.+||..
T Consensus 219 ~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (277)
T 4dqx_A 219 KDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGS 269 (277)
T ss_dssp SCHHHHHHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred cchhHHHHHHHhcCcccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCch
Confidence 11111111223456678899999999999999999889999999999953
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=325.35 Aligned_cols=245 Identities=17% Similarity=0.183 Sum_probs=207.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++|++|||||++|||+++|++|+++|+ +|++++ |+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999996 887765 456667777777777778899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++ +|+||++||..+..
T Consensus 93 ~~g~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~--------- 158 (270)
T 3is3_A 93 HFGHLDIAVSNSGVV-SFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE----GGRIVLTSSNTSKD--------- 158 (270)
T ss_dssp HHSCCCEEECCCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT----TCEEEEECCTTTTT---------
T ss_pred HcCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCeEEEEeCchhcc---------
Confidence 999999999999997 4467778899999999999999999999999999976 37999999987431
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc---
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--- 317 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--- 317 (399)
.+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 159 -------------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 212 (270)
T 3is3_A 159 -------------------------FSVPKHSLYSGSKGAVDSFVRIFSKDC-GDKKITVNAVAPGGTVTDMFHEVSHHY 212 (270)
T ss_dssp -------------------------CCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTTHHHHGGGG
T ss_pred -------------------------CCCCCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhhhhc
Confidence 134677899999999999999999999 567999999999999998653210
Q ss_pred c------hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 I------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~------~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. .............+.+++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 268 (270)
T 3is3_A 213 IPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGG 268 (270)
T ss_dssp STTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCC
Confidence 0 0011111223345778899999999999999999999999999999984
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=326.69 Aligned_cols=242 Identities=19% Similarity=0.154 Sum_probs=200.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++|++|||||++|||+++|++|+++|+ +|++. .|+.+..+++.+++...+.++.++.||++|+++++++++++.+
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999996 77776 6677777777777777778899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ...++.+.+.++|+++|++|+.|+++++++++|.|++ +|+||++||..+..
T Consensus 102 ~~g~iD~lvnnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~--------- 167 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIM-PLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV----GGRIINMSTSQVGL--------- 167 (267)
T ss_dssp HHSCEEEEEECCCCC-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCTHHHH---------
T ss_pred HcCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCeEEEEeChhhcc---------
Confidence 999999999999997 4467778899999999999999999999999999976 37999999988764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++.......
T Consensus 168 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~- 219 (267)
T 3u5t_A 168 --------------------------LHPSYGIYAAAKAGVEAMTHVLSKEL-RGRDITVNAVAPGPTATDLFLEGKSD- 219 (267)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECCBC-----------
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEEECCCcCccccccCCH-
Confidence 34677899999999999999999999 67799999999999999865332111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 220 -~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 220 -EVRDRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp --CHHHHHTSSTTCSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 1111222345678889999999999999999999999999999984
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=326.62 Aligned_cols=240 Identities=20% Similarity=0.209 Sum_probs=208.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++|++|||||++|||+++|+.|+++|+ +|++++| +.+..++..+++...+.++.++.+|++|+++++++++++.+
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999996 8888777 66777777777776678899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 103 ~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 170 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITR-DTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR--SGRIINIASVVGEM--------- 170 (269)
T ss_dssp HHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCHHHHH---------
T ss_pred HcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhcC---------
Confidence 9999999999999974 45677889999999999999999999999999998765 58999999998875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++.... ..
T Consensus 171 --------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~-~~- 221 (269)
T 4dmm_A 171 --------------------------GNPGQANYSAAKAGVIGLTKTVAKEL-ASRGITVNAVAPGFIATDMTSEL-AA- 221 (269)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBTTSCSCHH-HH-
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEECCCcCcccccc-cH-
Confidence 34677899999999999999999999 56799999999999999854321 11
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcC-CCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~-~~~~~~G~~~~~dg~ 367 (399)
.......+.+++.+|+|+|+.++||+++ .+.+++|+.|.+||.
T Consensus 222 ----~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG 265 (269)
T 4dmm_A 222 ----EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGG 265 (269)
T ss_dssp ----HHHGGGCTTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTT
T ss_pred ----HHHHhcCCCCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCC
Confidence 1223345678899999999999999998 667899999999985
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=323.64 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=201.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++++|++|||||++|||+++|++|+++|+ +|+++ .|+.+..+...+++...+.++.++.||++|+++++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999996 78777 6677777777777777778899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++ .|+||++||.++..
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~--------- 149 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK----GGAIVTFSSQAGRD--------- 149 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEECCHHHHH---------
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCEEEEEcCHHhcc---------
Confidence 99999999999998755677888999999999999999999999999999976 37999999998762
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+.++...|++||+|++.|++.++.|+ ++. |+||+|+||+|+|++......+
T Consensus 150 -------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~-I~vn~v~PG~v~T~~~~~~~~~- 201 (259)
T 3edm_A 150 -------------------------GGGPGALAYATSKGAVMTFTRGLAKEV-GPK-IRVNAVCPGMISTTFHDTFTKP- 201 (259)
T ss_dssp -------------------------CCSTTCHHHHHHHHHHHHHHHHHHHHH-TTT-CEEEEEEECCBCC----------
T ss_pred -------------------------CCCCCcHHHHHHHHHHHHHHHHHHHHH-CCC-CEEEEEEECCCcCcccccccCh-
Confidence 134677899999999999999999999 554 9999999999999855332111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 370 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~ 370 (399)
..........+.+++.+|+|+|+.++||+++.+.++||++|.+||....
T Consensus 202 -~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~ 250 (259)
T 3edm_A 202 -EVRERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLF 250 (259)
T ss_dssp --------------CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSB
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCC
Confidence 1222334456778899999999999999999989999999999996443
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=325.29 Aligned_cols=247 Identities=19% Similarity=0.206 Sum_probs=204.3
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++++.+|++|||||++|||+++|++|+++|+ +|++++| +.+..+...+++... +.++.++.+|++|+++++++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999996 9999999 566677777776544 568999999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.+|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 99 ~~~~g~iD~lv~nAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~------- 168 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG--WGRIINIASAHGLV------- 168 (281)
T ss_dssp HHHTSSCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-------
T ss_pred HHHCCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCccccc-------
Confidence 99999999999999986 445677889999999999999999999999999998875 58999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 169 ----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~ 219 (281)
T 3v2h_A 169 ----------------------------ASPFKSAYVAAKHGIMGLTKTVALEV-AESGVTVNSICPGYVLTPLVEKQIP 219 (281)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC--------
T ss_pred ----------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEECCCCcCcchhhhcc
Confidence 34667899999999999999999999 6679999999999999986543221
Q ss_pred hhhh--------hhc-hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFR--------LLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~--------~~~-~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.... ... ......+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG 277 (281)
T 3v2h_A 220 DQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGG 277 (281)
T ss_dssp --------------------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred hhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence 1100 000 122345678899999999999999999999999999999985
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=322.03 Aligned_cols=240 Identities=17% Similarity=0.205 Sum_probs=206.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++ +.++.++.+|++|+++++++++++.+.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999996 9999999998888777766 4578999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++ +|+||++||.++..
T Consensus 81 g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~----------- 144 (255)
T 4eso_A 81 GAIDLLHINAGVS-ELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE----GGSIVFTSSVADEG----------- 144 (255)
T ss_dssp SSEEEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEECCGGGSS-----------
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCEEEEECChhhcC-----------
Confidence 9999999999996 4467778899999999999999999999999999876 37999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh--
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-- 320 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++........
T Consensus 145 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~ 199 (255)
T 4eso_A 145 ------------------------GHPGMSVYSASKAALVSFASVLAAEL-LPRGIRVNSVSPGFIDTPTKGVAGITEAE 199 (255)
T ss_dssp ------------------------BCTTBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEEECSBCCSSTTCTTSCHHH
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEecCcccCcccccccCChhh
Confidence 34678899999999999999999999 667999999999999998653321111
Q ss_pred hh-hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 321 FR-LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 321 ~~-~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.. .........+.+++.+|||+|+.++||+++ +.++||+.+.+||..
T Consensus 200 ~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~itG~~i~vdGG~ 247 (255)
T 4eso_A 200 RAEFKTLGDNITPMKRNGTADEVARAVLFLAFE-ATFTTGAKLAVDGGL 247 (255)
T ss_dssp HHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHHT-CTTCCSCEEEESTTT
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHHHHHcCc-CcCccCCEEEECCCc
Confidence 11 111223345778899999999999999998 788999999999953
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=324.67 Aligned_cols=272 Identities=31% Similarity=0.402 Sum_probs=212.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++++|++|||||++|||+++|+.|+++|+ +|++++|+.++.++..+++ +.++.++.+|++|.++++++++++
T Consensus 11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~-- 84 (291)
T 3rd5_A 11 LPSFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTM---AGQVEVRELDLQDLSSVRRFADGV-- 84 (291)
T ss_dssp CCCCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTS---SSEEEEEECCTTCHHHHHHHHHTC--
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---cCCeeEEEcCCCCHHHHHHHHHhc--
Confidence 4578999999999999999999999999995 9999999988877776655 568999999999999999988865
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++|+||||||+..+ ..+.+.++|++++++|+.|+++++++++|.|.+ +||++||.++..+...
T Consensus 85 --~~iD~lv~nAg~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~------riv~isS~~~~~~~~~----- 148 (291)
T 3rd5_A 85 --SGADVLINNAGIMAV---PYALTVDGFESQIGTNHLGHFALTNLLLPRLTD------RVVTVSSMAHWPGRIN----- 148 (291)
T ss_dssp --CCEEEEEECCCCCSC---CCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE------EEEEECCGGGTTCCCC-----
T ss_pred --CCCCEEEECCcCCCC---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh------heeEeechhhccCCCC-----
Confidence 689999999998643 246789999999999999999999999999864 8999999988753211
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCc--eEEEEeeCCcccCCCCccccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~g--i~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.+. ..+..++++...|++||++++.|++.++.++ .+.| |+||+|+||+|+|++.... .
T Consensus 149 ---~~~~--------------~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~g~~i~v~~v~PG~v~T~~~~~~-~ 209 (291)
T 3rd5_A 149 ---LEDL--------------NWRSRRYSPWLAYSQSKLANLLFTSELQRRL-TAAGSPLRALAAHPGYSHTNLQGAS-G 209 (291)
T ss_dssp ---SSCT--------------TCSSSCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCEEEEECCSGGGSCC------
T ss_pred ---cccc--------------cccccCCCCcchHHHHHHHHHHHHHHHHHHH-hhCCCCEEEEEeeCCCCcccccccc-c
Confidence 0000 1112356788999999999999999999999 4446 9999999999999855432 1
Q ss_pred hhhhhhchhhHHHHhcCCC-ChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc--cccccCcccCCHHHHHHHHHHHHHH
Q 015844 319 PLFRLLFPPFQKYITKGYV-SEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS--FENQLSQEASDVEKARKVWEISEKL 395 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~-~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~--~~~~~~~~~~~~~~~~~lw~~~~~~ 395 (399)
+ .....+...+.++.. +|+|+|+.++|+++++ +++|+++.+||.... .....+..+.|++++++||++++++
T Consensus 210 ~---~~~~~~~~~~~~~~~~~~~~~A~~~~~l~~~~--~~~G~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~lw~~~~~~ 284 (291)
T 3rd5_A 210 R---KLGDALMSAATRVVATDADFGARQTLYAASQD--LPGDSFVGPRFGYLGRTQPVGRSRRAKDAGMAAALWALSEQL 284 (291)
T ss_dssp ------------------CHHHHHHHHHHHHHHHSC--CCTTCEEEETTSSSSCEEECCCCTGGGCHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC--CCCCceeCCcccccCccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 1 112222333444444 4999999999999984 799999999985432 1235678899999999999999999
Q ss_pred hcC
Q 015844 396 VGL 398 (399)
Q Consensus 396 ~~~ 398 (399)
+++
T Consensus 285 ~~~ 287 (291)
T 3rd5_A 285 TKT 287 (291)
T ss_dssp HTC
T ss_pred Hcc
Confidence 986
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=323.70 Aligned_cols=244 Identities=18% Similarity=0.201 Sum_probs=207.2
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||+++|+.|+++|+ +|++++|+ +..++..+++...+.++.++.+|++|.++++++.+.+ +
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~ 102 (273)
T 3uf0_A 26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEEL-A 102 (273)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHH-H
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-H
Confidence 3578999999999999999999999999996 89998876 4456666677666788999999999999999995544 5
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 103 ~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~--------- 170 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIA-RAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIVTIASMLSFQ--------- 170 (273)
T ss_dssp HHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred hcCCCcEEEECCCCCC-CCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchHhcC---------
Confidence 5689999999999974 46777889999999999999999999999999998875 58999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++... ....
T Consensus 171 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~-~~~~ 222 (273)
T 3uf0_A 171 --------------------------GGRNVAAYAASKHAVVGLTRALASEW-AGRGVGVNALAPGYVVTANTAA-LRAD 222 (273)
T ss_dssp --------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHH-HHTS
T ss_pred --------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCchhh-cccC
Confidence 34677899999999999999999999 6679999999999999985432 1111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 223 ~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG 269 (273)
T 3uf0_A 223 DERAAEITARIPAGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGG 269 (273)
T ss_dssp HHHHHHHHHHSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 12223344566778899999999999999999988999999999985
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=324.92 Aligned_cols=245 Identities=22% Similarity=0.194 Sum_probs=195.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++| +.+..++..+++...+.++.+++||++|+++++++++++.+.
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999996 8888875 777777777777767788999999999999999999999999
Q ss_pred CCCccEEEecCcccC-CCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 162 ~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++++|+||||||+.. ...++.+.+.++|++++++|+.|+++++++++|.|++++. +.|+||++||.++..
T Consensus 105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-------- 176 (280)
T 4da9_A 105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM-------- 176 (280)
T ss_dssp HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC------------
T ss_pred cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc--------
Confidence 999999999999842 3456778899999999999999999999999999987541 247999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++.... .+
T Consensus 177 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~-~~ 227 (280)
T 4da9_A 177 ---------------------------TSPERLDYCMSKAGLAAFSQGLALRL-AETGIAVFEVRPGIIRSDMTAAV-SG 227 (280)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC---------
T ss_pred ---------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEeecCCcCCchhhc-ch
Confidence 34567899999999999999999999 67799999999999999865332 11
Q ss_pred hhhhhchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ...... ..+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 228 ~~--~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 274 (280)
T 4da9_A 228 KY--DGLIESGLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGG 274 (280)
T ss_dssp ----------------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTT
T ss_pred hH--HHHHhhcCCCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 11 111122 45678899999999999999999999999999999995
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=319.38 Aligned_cols=241 Identities=20% Similarity=0.202 Sum_probs=208.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+.+|++|||||++|||+++|++|+++|+ +|++++| +.+..++..+++...+.++.++++|++|.++++++++++.+++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF 80 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4679999999999999999999999996 8877665 5677777777777777889999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 81 g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 146 (246)
T 3osu_A 81 GSLDVLVNNAGITR-DNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR--SGAIINLSSVVGAV----------- 146 (246)
T ss_dssp SCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH-----------
T ss_pred CCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcC-----------
Confidence 99999999999874 46677889999999999999999999999999998765 58999999998875
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++... ..+ .
T Consensus 147 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~-~~~--~ 198 (246)
T 3osu_A 147 ------------------------GNPGQANYVATKAGVIGLTKSAAREL-ASRGITVNAVAPGFIVSDMTDA-LSD--E 198 (246)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCCSC-SCH--H
T ss_pred ------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECCCcCCcccc-cCH--H
Confidence 34677899999999999999999999 5679999999999999985432 222 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++||+++++.+++|+.|.+||.
T Consensus 199 ~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 199 LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp HHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 112233345678899999999999999999989999999999984
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=321.64 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=207.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++|++|||||++|||+++|++|+++|+ +|+++++ +.+..+...+++...+.++.++.+|++|+++++++++++.+
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999996 8887754 55667777777777778899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++ .|+||++||..+..
T Consensus 106 ~~g~iD~lvnnAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~----~g~iv~isS~~~~~--------- 171 (271)
T 3v2g_A 106 ALGGLDILVNSAGIW-HSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD----GGRIITIGSNLAEL--------- 171 (271)
T ss_dssp HHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT----TCEEEEECCGGGTC---------
T ss_pred HcCCCcEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCEEEEEeChhhcc---------
Confidence 999999999999987 4467778899999999999999999999999999965 37999999987653
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++.... ..
T Consensus 172 -------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~-~~- 223 (271)
T 3v2g_A 172 -------------------------VPWPGISLYSASKAALAGLTKGLARDL-GPRGITVNIVHPGSTDTDMNPAD-GD- 223 (271)
T ss_dssp -------------------------CCSTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSSSSCSS-CS-
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCCCcCCccccc-ch-
Confidence 134678899999999999999999999 56799999999999999865332 11
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 224 --~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 268 (271)
T 3v2g_A 224 --HAEAQRERIATGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGG 268 (271)
T ss_dssp --SHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --hHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEeCcC
Confidence 112233456678899999999999999999999999999999985
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=317.69 Aligned_cols=236 Identities=20% Similarity=0.225 Sum_probs=205.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecC--CCHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDL--ASLDSVRQFVDTF 158 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv--s~~~~v~~~~~~~ 158 (399)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+ .++.++.+|+ +|.++++++++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 368999999999999999999999999996 99999999988888877775443 3788999999 9999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~------- 157 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD--AGSLVFTSSSVGRQ------- 157 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGTS-------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC--CCEEEEECChhhcc-------
Confidence 999999999999999865556788899999999999999999999999999998875 58999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|++.|++.++.|+ ++. |+||+|+||+|+|++.....
T Consensus 158 ----------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~-irvn~v~PG~v~t~~~~~~~- 206 (252)
T 3f1l_A 158 ----------------------------GRANWGAYAASKFATEGMMQVLADEY-QQR-LRVNCINPGGTRTAMRASAF- 206 (252)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEECCSBSSHHHHHHC-
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCC-cEEEEEecCcccCchhhhhC-
Confidence 34677899999999999999999999 554 99999999999997432111
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
+ .....++.+|+|+|+.++||+++.+.++||+.|.+||..
T Consensus 207 ~----------~~~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~ 246 (252)
T 3f1l_A 207 P----------TEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGR 246 (252)
T ss_dssp T----------TCCGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC-
T ss_pred C----------ccchhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCc
Confidence 1 011235789999999999999999999999999999954
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=319.06 Aligned_cols=244 Identities=18% Similarity=0.149 Sum_probs=208.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.||++|+++++++++++.++
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 79 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEH 79 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999996 9999999998888877776 356889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.+++. +|+||++||.++..
T Consensus 80 ~g~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 147 (259)
T 4e6p_A 80 AGGLDILVNNAALF-DLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGR-GGKIINMASQAGRR---------- 147 (259)
T ss_dssp SSSCCEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEECChhhcc----------
Confidence 99999999999986 4456778899999999999999999999999999987642 47999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--- 318 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 148 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~ 201 (259)
T 4e6p_A 148 -------------------------GEALVAIYCATKAAVISLTQSAGLDL-IKHRINVNAIAPGVVDGEHWDGVDALFA 201 (259)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTHHHHHHHHH
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEECCCccchhhhhhhhhh
Confidence 34677899999999999999999999 6679999999999999985432100
Q ss_pred -----hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -----PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -----~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG 255 (259)
T 4e6p_A 202 RYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGG 255 (259)
T ss_dssp HHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred hhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcC
Confidence 0011111223345678899999999999999999989999999999985
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-43 Score=327.34 Aligned_cols=244 Identities=21% Similarity=0.196 Sum_probs=207.9
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..++++|++|||||++|||+++|++|+++|+ +|++++|+.+. .+...+.+...+.++.++.+|++|+++++++++++.
T Consensus 42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999999996 99999998653 445555566667789999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++++++|+||||||+......+.+.+.++|++++++|+.|+++++++++|+|++ +|+||++||..+..
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~-------- 188 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ----GDVIINTASIVAYE-------- 188 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT----TCEEEEECCTHHHH--------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh----CCEEEEEechHhcC--------
Confidence 999999999999998755566778899999999999999999999999999865 36999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 189 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~ 240 (291)
T 3ijr_A 189 ---------------------------GNETLIDYSATKGAIVAFTRSLSQSL-VQKGIRVNGVAPGPIWTPLIPSSFDE 240 (291)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTHHHHHSCH
T ss_pred ---------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCCCcCCcccccCCH
Confidence 33567899999999999999999999 56799999999999999854322111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 241 --~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 286 (291)
T 3ijr_A 241 --KKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGG 286 (291)
T ss_dssp --HHHHHTTTTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred --HHHHHHHccCCCCCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCC
Confidence 1111223345678899999999999999999999999999999985
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=328.05 Aligned_cols=245 Identities=18% Similarity=0.138 Sum_probs=208.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC--hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.+++++|++|||||++|||+++|++|+++|+ +|++++|+ ....+.+.+.+...+.++.++.||++|+++++++++++
T Consensus 44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999996 89998886 34455566666666778999999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+ +|+||++||.++..
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----~g~Iv~isS~~~~~------- 191 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK----GASIITTSSIQAYQ------- 191 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT----TCEEEEECCGGGTS-------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc----CCEEEEECChhhcc-------
Confidence 9999999999999998654566778899999999999999999999999999865 37999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 192 ----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~ 242 (294)
T 3r3s_A 192 ----------------------------PSPHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISGGQ 242 (294)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHTTTS
T ss_pred ----------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCccccccccCC
Confidence 44677899999999999999999999 6679999999999999985222111
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 243 -~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 290 (294)
T 3r3s_A 243 -TQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_dssp -CGGGSTTTTTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 112222334456678899999999999999999999999999999985
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=318.66 Aligned_cols=246 Identities=20% Similarity=0.189 Sum_probs=206.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 17 WSLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 9999999988888777777655678999999999999999999999999
Q ss_pred C-CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+ +++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 96 ~~g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 163 (273)
T 1ae1_A 96 FDGKLNILVNNAGVV-IHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGFS--------- 163 (273)
T ss_dssp TTSCCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGTS---------
T ss_pred cCCCCcEEEECCCCC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHhhcC---------
Confidence 8 8999999999986 345677889999999999999999999999999998764 48999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 164 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 216 (273)
T 1ae1_A 164 --------------------------ALPSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKN 216 (273)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC-----------
T ss_pred --------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCchhhhhhhcc
Confidence 34567899999999999999999999 5679999999999999986432111
Q ss_pred h-hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 P-LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+ ............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 217 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 266 (273)
T 1ae1_A 217 PHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 266 (273)
T ss_dssp --CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCC
Confidence 0 111112223345677889999999999999998888999999999985
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=323.37 Aligned_cols=263 Identities=12% Similarity=0.131 Sum_probs=201.5
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+.+ .++..+++......+.++.+|++|+++++++++++.+
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEE 95 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 3789999999999 9999999999999995 9999999874 3333333322212367899999999999999999999
Q ss_pred cCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
.++++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|+++ +|+||++||..+..
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~------ 166 (285)
T 2p91_A 96 NWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR---NGAIVTLSYYGAEK------ 166 (285)
T ss_dssp HTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS---CCEEEEEECGGGTS------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCEEEEEccchhcc------
Confidence 99999999999998632 2456678999999999999999999999999999754 37999999988764
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||++++.|++.++.++ ++.||+||+|+||+|+|++... .
T Consensus 167 -----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~ 215 (285)
T 2p91_A 167 -----------------------------VVPHYNVMGIAKAALESTVRYLAYDI-AKHGHRINAISAGPVKTLAAYS-I 215 (285)
T ss_dssp -----------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCSCC---C
T ss_pred -----------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCcccCchhhc-c
Confidence 33566789999999999999999999 6779999999999999985422 1
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHH
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEI 391 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~ 391 (399)
..............+.+++.+|+|+|+.++|++++...+++|+++.+||.. .......+|++++++||+.
T Consensus 216 ~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~----~~~~~~~~~~~~~~~lw~~ 285 (285)
T 2p91_A 216 TGFHLLMEHTTKVNPFGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGY----HIMGVFGREEEIKKEVYGD 285 (285)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG----GGBSCC-------------
T ss_pred cchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCc----ccccccCChHHHHHHhcCC
Confidence 111111112223445677899999999999999988888999999999863 3345778899999999974
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=326.53 Aligned_cols=245 Identities=11% Similarity=0.112 Sum_probs=199.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC---hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.+++++|++|||||++|||+++|++|+++|+ +|++++|+ .+.++++.+++...+.++.++.||++|++++++++++
T Consensus 6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 84 (262)
T 3ksu_A 6 YHDLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDF 84 (262)
T ss_dssp CSCCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 3578999999999999999999999999996 88887664 4567777777777778899999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++ .|+||++||.++..
T Consensus 85 ~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~iv~isS~~~~~------ 153 (262)
T 3ksu_A 85 AEKEFGKVDIAINTVGKVL-KKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNP----NGHIITIATSLLAA------ 153 (262)
T ss_dssp HHHHHCSEEEEEECCCCCC-SSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE----EEEEEEECCCHHHH------
T ss_pred HHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcC----CCEEEEEechhhcc------
Confidence 9999999999999999874 466778899999999999999999999999999944 37999999988764
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|+++|++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 154 -----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~ 203 (262)
T 3ksu_A 154 -----------------------------YTGFYSTYAGNKAPVEHYTRAASKEL-MKQQISVNAIAPGPMDTSFFYGQE 203 (262)
T ss_dssp -----------------------------HHCCCCC-----CHHHHHHHHHHHHT-TTTTCEEEEEEECCCCTHHHHTCC
T ss_pred -----------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCccccccC
Confidence 23456789999999999999999999 677999999999999998543321
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 370 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~ 370 (399)
.+ ..........+.+++.+|||+|+.++||+++ +.++||+.|.+||....
T Consensus 204 ~~--~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i~vdGg~~~ 253 (262)
T 3ksu_A 204 TK--ESTAFHKSQAMGNQLTKIEDIAPIIKFLTTD-GWWINGQTIFANGGYTT 253 (262)
T ss_dssp --------------CCCCSCCGGGTHHHHHHHHTT-TTTCCSCEEEESTTCCC
T ss_pred ch--HHHHHHHhcCcccCCCCHHHHHHHHHHHcCC-CCCccCCEEEECCCccC
Confidence 11 1112223345667889999999999999999 88899999999996544
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=320.48 Aligned_cols=245 Identities=20% Similarity=0.188 Sum_probs=208.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 99999999888888877776667789999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 149 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGVK----------- 149 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHS-----------
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcc-----------
Confidence 99999999999863345667889999999999999999999999999998764 48999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc-----
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----- 317 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~----- 317 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 150 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~ 204 (262)
T 1zem_A 150 ------------------------GPPNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQA 204 (262)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHHH
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEecCCcCcchhhhhccchhh
Confidence 33567899999999999999999999 567999999999999998542210
Q ss_pred ------ch-hhh-hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 318 ------IP-LFR-LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 318 ------~~-~~~-~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. ... .........|.+++.+|+|+|+.++||+++.+.+++|+.+.+||
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 261 (262)
T 1zem_A 205 KVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 261 (262)
T ss_dssp HHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred hccccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCcEEecCC
Confidence 00 001 11112233466888999999999999999988899999999987
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=318.69 Aligned_cols=246 Identities=20% Similarity=0.239 Sum_probs=206.9
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh-ccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
...+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++ ...+.++.++.||++|+++++++++++.
T Consensus 16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK 94 (267)
T ss_dssp -CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 4478899999999999999999999999995 9999999988877776666 3335678899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc-cccCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT-GNTNTLAGNV 238 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~-~~~~~~~~~~ 238 (399)
+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.+ +..
T Consensus 95 ~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~------- 164 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINR-RHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVEEV------- 164 (267)
T ss_dssp HHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGTCC-------
T ss_pred HHcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECCcchhcc-------
Confidence 99999999999999863 45667889999999999999999999999999998765 47999999987 653
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++... ..
T Consensus 165 ----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~-~~ 214 (267)
T 1vl8_A 165 ----------------------------TMPNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEA-VF 214 (267)
T ss_dssp ----------------------------CSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHH-HH
T ss_pred ----------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCccccccc-cc
Confidence 33567899999999999999999999 5679999999999999985432 11
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 215 ~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 263 (267)
T 1vl8_A 215 SDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 263 (267)
T ss_dssp TCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCC
Confidence 0001111122334567889999999999999999888899999999985
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=324.32 Aligned_cols=247 Identities=11% Similarity=0.046 Sum_probs=206.6
Q ss_pred cCccccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 79 QGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 79 ~~~~~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
..++.+++|++|||||+| |||+++|+.|+++|+ +|++++|+....+...+..... ..+.+++||++|+++++++++
T Consensus 23 ~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 23 RTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp CCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHH
T ss_pred cchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHH
Confidence 345678999999999997 999999999999996 8999999975544443333222 346889999999999999999
Q ss_pred HHHHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
++.+++|++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|++ .|+||++||.++..
T Consensus 101 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~----~g~IV~isS~~~~~-- 174 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN----GGSILTLSYYGAEK-- 174 (296)
T ss_dssp HHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT----CEEEEEEECGGGTS--
T ss_pred HHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCEEEEEEehhhcc--
Confidence 999999999999999998642 145668899999999999999999999999999876 37999999998874
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++.
T Consensus 175 ---------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~ 220 (296)
T 3k31_A 175 ---------------------------------VVPHYNVMGVCKAALEASVKYLAVDL-GKQQIRVNAISAGPVRTLAS 220 (296)
T ss_dssp ---------------------------------CCTTTTHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCCCCSSC
T ss_pred ---------------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEECCCcCchh
Confidence 34677899999999999999999999 67799999999999999854
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.. ...............+.+++.+|||+|+.++||+++.+.++||+.|.+||..
T Consensus 221 ~~-~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 274 (296)
T 3k31_A 221 SG-ISDFHYILTWNKYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGY 274 (296)
T ss_dssp CS-CHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hc-ccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCc
Confidence 32 2222222333445567788999999999999999998889999999999953
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=314.44 Aligned_cols=242 Identities=19% Similarity=0.223 Sum_probs=211.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++++++++.+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999996 99999999988888888887777889999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.+++ .|+||++||..+..
T Consensus 81 ~~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 146 (247)
T 3lyl_A 81 LAIDILVNNAGIT-RDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR--WGRIISIGSVVGSA----------- 146 (247)
T ss_dssp CCCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH-----------
T ss_pred CCCCEEEECCCCC-CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhcc-----------
Confidence 9999999999997 445667889999999999999999999999999998765 48999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.++ .+.||+||+|+||+|+|++... ..+..
T Consensus 147 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~~~- 199 (247)
T 3lyl_A 147 ------------------------GNPGQTNYCAAKAGVIGFSKSLAYEV-ASRNITVNVVAPGFIATDMTDK-LTDEQ- 199 (247)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTT-SCHHH-
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCcEecccchh-ccHHH-
Confidence 34677899999999999999999999 5679999999999999985433 22211
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+.+++.+|+|+|+.++||+++...+++|+.|.+||.
T Consensus 200 -~~~~~~~~~~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 243 (247)
T 3lyl_A 200 -KSFIATKIPSGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGG 243 (247)
T ss_dssp -HHHHHTTSTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHhhcCCCCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCC
Confidence 11122344567889999999999999999988999999999984
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=327.01 Aligned_cols=247 Identities=20% Similarity=0.226 Sum_probs=206.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC------------hHHHHHHHHHhccCCCcEEEEEecCCCH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASL 148 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~ 148 (399)
+..+++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+.+...+.++.++.+|++|+
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~ 119 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDL 119 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 4468899999999999999999999999996 89988775 5666777777766678899999999999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
++++++++++.+.+|+||+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++. +|+||++||.+
T Consensus 120 ~~v~~~~~~~~~~~g~iD~lVnnAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-~g~Iv~isS~~ 197 (317)
T 3oec_A 120 ASLQAVVDEALAEFGHIDILVSNVGIS-NQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQ-GGSVIFVSSTV 197 (317)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC-CCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCS-CEEEEEECCGG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CCEEEEECcHH
Confidence 999999999999999999999999987 4456778899999999999999999999999999987642 48999999998
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
+.. +.++...|++||+|++.|++.|+.|+ ++.||+||+|+||+|
T Consensus 198 ~~~-----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v 241 (317)
T 3oec_A 198 GLR-----------------------------------GAPGQSHYAASKHGVQGLMLSLANEV-GRHNIRVNSVNPGAV 241 (317)
T ss_dssp GSS-----------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSB
T ss_pred hcC-----------------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcc
Confidence 874 44678899999999999999999999 667999999999999
Q ss_pred cCCCCccccc-----h-----hh---hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 309 ATTGLFREHI-----P-----LF---RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 309 ~T~~~~~~~~-----~-----~~---~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+|++...... + .. ..........+ +++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 242 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG 312 (317)
T 3oec_A 242 NTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLP-IPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGG 312 (317)
T ss_dssp SSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSSS-SSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCccccchhhhhhhhhhccccchhHHHHHHhhhccCC-CCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcc
Confidence 9985422110 0 00 00000011112 5678999999999999999999999999999985
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=315.67 Aligned_cols=246 Identities=17% Similarity=0.122 Sum_probs=206.1
Q ss_pred ccccCCCEEEEEcCC-ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s-~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++.+++|++|||||+ +|||+++|++|+++|+ +|++++|+.+..++..+++... +.++.++.||++|.++++++++++
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 456899999999998 5999999999999995 9999999998888888887544 468999999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.++++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|+|++++. +++||++||..+..
T Consensus 96 ~~~~g~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~------- 166 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLG-GQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDH-GGVIVNNASVLGWR------- 166 (266)
T ss_dssp HHHHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSC-CEEEEEECCGGGTC-------
T ss_pred HHHhCCCcEEEECCCcC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEeCCHHHcC-------
Confidence 99999999999999986 4466778899999999999999999999999999987632 58999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 167 ----------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~ 217 (266)
T 3o38_A 167 ----------------------------AQHSQSHYAAAKAGVMALTRCSAIEA-VEFGVRINAVSPSIARHKFLEKTSS 217 (266)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC--------
T ss_pred ----------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeCCcccchhhhccCc
Confidence 44678899999999999999999999 5679999999999999986543221
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+ ..........+.+++.+|+|+|+.++||+++...+++|++|.+||.
T Consensus 218 ~--~~~~~~~~~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 264 (266)
T 3o38_A 218 S--ELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ 264 (266)
T ss_dssp -----------CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred H--HHHHHHHhcCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence 1 1222233345667889999999999999999888999999999984
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=313.77 Aligned_cols=239 Identities=17% Similarity=0.158 Sum_probs=201.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|++|||||++|||+++|++|+++|+ .+|++++|+.+.++++.+++ +.++.++.+|++|+++++++++++.+.+|+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGHGK 78 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999863 48999999988888777665 467899999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|++++ |+||++||.++..
T Consensus 79 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~---g~iv~isS~~~~~------------- 142 (254)
T 3kzv_A 79 IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSSDACNM------------- 142 (254)
T ss_dssp CCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCSCCCC-------------
T ss_pred ccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CeEEEEcCchhcc-------------
Confidence 999999999975556788899999999999999999999999999998764 7999999998874
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-----
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP----- 319 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~----- 319 (399)
+.++...|++||++++.|++.++.|+ +||+||+|+||+|+|++.......
T Consensus 143 ----------------------~~~~~~~Y~asK~a~~~~~~~la~e~---~~i~vn~v~PG~v~t~~~~~~~~~~~~~~ 197 (254)
T 3kzv_A 143 ----------------------YFSSWGAYGSSKAALNHFAMTLANEE---RQVKAIAVAPGIVDTDMQVNIRENVGPSS 197 (254)
T ss_dssp ----------------------SSCCSHHHHHHHHHHHHHHHHHHHHC---TTSEEEEEECSSCCCCCSCCCCCCCCTTT
T ss_pred ----------------------CCCCcchHHHHHHHHHHHHHHHHhhc---cCcEEEEEeCCcccchhHHHhhcccCccc
Confidence 44677899999999999999999997 489999999999999865432110
Q ss_pred -hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCC-CCCCceEEccCCCC
Q 015844 320 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWNKDS 368 (399)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~-~~~~G~~~~~dg~~ 368 (399)
............+.+++.+|+|+|+.++||+++.. .+++|++|.+||..
T Consensus 198 ~~~~~~~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~ 248 (254)
T 3kzv_A 198 MSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPA 248 (254)
T ss_dssp SCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGG
T ss_pred cCHHHHHHHHHHHhcCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCcc
Confidence 11122233445667889999999999999999984 89999999999953
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=321.74 Aligned_cols=245 Identities=15% Similarity=0.077 Sum_probs=201.3
Q ss_pred ccccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+..+++|++|||||+ +|||+++|+.|+++|+ +|++++|+....+... ++.....++.++.||++|.++++++++++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVE-PLAEELGAFVAGHCDVADAASIDAVFETL 103 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHH-HHHHHHTCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH-HHHHhcCCceEEECCCCCHHHHHHHHHHH
Confidence 346899999999999 5599999999999996 8999999864333332 22222246889999999999999999999
Q ss_pred HHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
.+.++++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|.|++ .|+||++||.++..
T Consensus 104 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~Iv~isS~~~~~---- 175 (293)
T 3grk_A 104 EKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD----GGSILTLTYYGAEK---- 175 (293)
T ss_dssp HHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT----CEEEEEEECGGGTS----
T ss_pred HHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCEEEEEeehhhcc----
Confidence 9999999999999998642 356678899999999999999999999999999976 47999999998874
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++...
T Consensus 176 -------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~ 223 (293)
T 3grk_A 176 -------------------------------VMPNYNVMGVAKAALEASVKYLAVDL-GPQNIRVNAISAGPIKTLAASG 223 (293)
T ss_dssp -------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC-----
T ss_pred -------------------------------CCCchHHHHHHHHHHHHHHHHHHHHH-hHhCCEEEEEecCCCcchhhhc
Confidence 34677899999999999999999999 6679999999999999985432
Q ss_pred ccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
...............+.+++.+|+|+|+.++||+++.+.++||++|.+||..
T Consensus 224 -~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 275 (293)
T 3grk_A 224 -IGDFRYILKWNEYNAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGY 275 (293)
T ss_dssp --CCHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -ccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCcceEEEECCCc
Confidence 2222222233445567788999999999999999998889999999999953
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=319.84 Aligned_cols=246 Identities=17% Similarity=0.151 Sum_probs=203.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC------------hHHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
.++++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+.+...+.++.++.||++|++
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 468899999999999999999999999996 89999987 66667766666666778999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
+++++++++.+.++++|+||||||+.... .+.++|+++|++|+.|+++++++++|+|.+++. .|+||++||.++
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~ 161 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPMS-----AGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGT-GGSIVLISSSAG 161 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCS-----STHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCC-----CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEccHHh
Confidence 99999999999999999999999986322 268999999999999999999999999987642 479999999988
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
..+.. .+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+
T Consensus 162 ~~~~~-------------------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~ 209 (278)
T 3sx2_A 162 LAGVG-------------------------------SADPGSVGYVAAKHGVVGLMRVYANLL-AGQMIRVNSIHPSGVE 209 (278)
T ss_dssp TSCCC-------------------------------CSSHHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBS
T ss_pred cCCCc-------------------------------cCCCCchHhHHHHHHHHHHHHHHHHHH-hccCcEEEEEecCCcc
Confidence 75210 123678899999999999999999999 5679999999999999
Q ss_pred CCCCccccchh-hhhh---c----hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 310 TTGLFREHIPL-FRLL---F----PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 310 T~~~~~~~~~~-~~~~---~----~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|++........ .... . ......+ +++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 210 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 274 (278)
T 3sx2_A 210 TPMINNEFTREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAG 274 (278)
T ss_dssp STTTSSHHHHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CccchhhhHHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCC
Confidence 99654321110 0000 0 0011122 5778999999999999999989999999999985
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=318.97 Aligned_cols=247 Identities=21% Similarity=0.182 Sum_probs=206.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++... +.++.++.||++|+++++++++++.
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999995 9999999988877777666443 5678999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.....++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||..+..
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 157 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGIR-------- 157 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS--------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcc--------
Confidence 99999999999999864325667889999999999999999999999999998765 47999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc--c
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE--H 317 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~--~ 317 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.... .
T Consensus 158 ---------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 209 (267)
T 1iy8_A 158 ---------------------------GIGNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQ 209 (267)
T ss_dssp ---------------------------BCSSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHH
T ss_pred ---------------------------CCCCCccHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEeCCCcCcchhccccc
Confidence 33567899999999999999999999 56799999999999999853221 0
Q ss_pred -chh-hhhh-chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 -IPL-FRLL-FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 -~~~-~~~~-~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+. .... .......+.+++.+|+|+|+.++||++++..+++|+.+.+||.
T Consensus 210 ~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG 262 (267)
T 1iy8_A 210 LDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGG 262 (267)
T ss_dssp HCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cChhhhhhHHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 010 0000 0111223567889999999999999998888999999999985
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=312.93 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=192.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++...+.++.++.||++|+++++++++++.+.
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 81 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH- 81 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence 57899999999999999999999999996 9999999999888888888777788999999999999999999999998
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 82 g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 147 (252)
T 3h7a_A 82 APLEVTIFNVGANV-NFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG--QGKIFFTGATASLR----------- 147 (252)
T ss_dssp SCEEEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTC-----------
T ss_pred CCceEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHHcC-----------
Confidence 99999999999974 46777889999999999999999999999999998875 58999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEE-EEeeCCcccCCCCccccchhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF-ASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v-~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|+++|++.++.|+ .+.||+| |+|+||+|+|++.......
T Consensus 148 ------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~n~v~PG~v~T~~~~~~~~~-- 200 (252)
T 3h7a_A 148 ------------------------GGSGFAAFASAKFGLRAVAQSMAREL-MPKNIHVAHLIIDSGVDTAWVRERREQ-- 200 (252)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC----------------
T ss_pred ------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCCccCChhhhccchh--
Confidence 44678899999999999999999999 5679999 9999999999865432111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.........+.+ +.+|+|+|+.++||++++....+|+....+-
T Consensus 201 -~~~~~~~~~~~~-~~~pedvA~~~~~l~s~~~~~~~~~i~~~~~ 243 (252)
T 3h7a_A 201 -MFGKDALANPDL-LMPPAAVAGAYWQLYQQPKSAWTFEMEIRPY 243 (252)
T ss_dssp ---------------CCHHHHHHHHHHHHHCCGGGBCSEEEEBCC
T ss_pred -hhhhhhhcCCcc-CCCHHHHHHHHHHHHhCchhcceeeEEeeec
Confidence 111122233444 8899999999999999887778888765443
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=314.08 Aligned_cols=246 Identities=18% Similarity=0.174 Sum_probs=208.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 5 WNLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999988888777777655678899999999999999999999999
Q ss_pred C-CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+ +++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 84 ~~g~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 151 (260)
T 2ae2_A 84 FHGKLNILVNNAGIV-IYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGAL--------- 151 (260)
T ss_dssp TTTCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGTS---------
T ss_pred cCCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcc---------
Confidence 9 8999999999986 345666789999999999999999999999999998765 48999999988764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-h
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-~ 319 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++...... +
T Consensus 152 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 204 (260)
T 2ae2_A 152 --------------------------AVPYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQDP 204 (260)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTTSH
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCCCCCcchhhhccCh
Confidence 34567899999999999999999999 5679999999999999985321110 1
Q ss_pred -hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....+.......+.+++.+|+|+|+.++||++++..+++|+.+.+||.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 253 (260)
T 2ae2_A 205 EQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 253 (260)
T ss_dssp HHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 011111222334567789999999999999998888899999999985
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-42 Score=313.94 Aligned_cols=247 Identities=20% Similarity=0.167 Sum_probs=200.0
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.||++|.++++++++++.+
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAALS 79 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999995 9999999998888877766 45789999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC--CCCceEEEEeccccccCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD--YPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~--~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.++++|+||||||+......+.+.+.++|++++++|+.|++++++.++|.|++++ ...++||++||..+..
T Consensus 80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------- 152 (261)
T 3n74_A 80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR------- 152 (261)
T ss_dssp HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS-------
T ss_pred hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC-------
Confidence 9999999999999875456677789999999999999999999999999998752 1146899999998774
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 153 ----------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~ 203 (261)
T 3n74_A 153 ----------------------------PRPNLAWYNATKGWVVSVTKALAIEL-APAKIRVVALNPVAGETPLLTTFMG 203 (261)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC------------
T ss_pred ----------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccChhhhhhcc
Confidence 44677889999999999999999999 5679999999999999986543211
Q ss_pred hh-hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PL-FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ...........+.+++.+|+|+|+.++||+++...+++|+.|.+||.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG 253 (261)
T 3n74_A 204 EDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGG 253 (261)
T ss_dssp -------------CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCcHHHHHHHhhcCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCC
Confidence 11 11122233455678899999999999999999888999999999995
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=317.68 Aligned_cols=243 Identities=16% Similarity=0.118 Sum_probs=201.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|++++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|+++++++++++.+.
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---BTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHc---CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999996 9999999988877776654 467899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCC----CCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEP----TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
++++|+||||||+......+. +.+.++|++++++|+.|+++++++++|+|.+++ |+||++||..+..
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~------ 147 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR---GSVVFTISNAGFY------ 147 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTS------
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC---CeEEEEecchhcc------
Confidence 999999999999864333332 344578999999999999999999999998753 7999999998874
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|+++|++.++.|+ ++. |+||+|+||+|+|++.....
T Consensus 148 -----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~-Irvn~v~PG~v~T~~~~~~~ 196 (281)
T 3zv4_A 148 -----------------------------PNGGGPLYTATKHAVVGLVRQMAFEL-APH-VRVNGVAPGGMNTDLRGPSS 196 (281)
T ss_dssp -----------------------------SSSSCHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSSCC--CCCTT
T ss_pred -----------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCC-CEEEEEECCcCcCCcccccc
Confidence 34667889999999999999999999 554 99999999999998653211
Q ss_pred chh-------hhhhchhhHHHHhcCCCChHHHHHHHHHhhc-CCCCCCCceEEccCCCC
Q 015844 318 IPL-------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVS-DPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 318 ~~~-------~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~-~~~~~~~G~~~~~dg~~ 368 (399)
... ...........+.+++.+|+|+|+.++||++ +.+.++||+.|.+||..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~ 255 (281)
T 3zv4_A 197 LGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGM 255 (281)
T ss_dssp CC--------CCHHHHHHHTCTTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSG
T ss_pred cccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCC
Confidence 100 0011122344567889999999999999999 67778999999999964
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=312.68 Aligned_cols=241 Identities=20% Similarity=0.215 Sum_probs=205.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
|++|++|||||++|||+++|+.|+++|+ +|++++| +.+..++..+++...+.++.++.+|++|+++++++++++.+.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999995 9999988 8777777777776556788999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..
T Consensus 81 g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 146 (246)
T 2uvd_A 81 GQVDILVNNAGVT-KDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR--HGRIVNIASVVGVT----------- 146 (246)
T ss_dssp SCCCEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH-----------
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCHHhcC-----------
Confidence 9999999999986 345666789999999999999999999999999998764 48999999998764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++... ..+.
T Consensus 147 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~-- 198 (246)
T 2uvd_A 147 ------------------------GNPGQANYVAAKAGVIGLTKTSAKEL-ASRNITVNAIAPGFIATDMTDV-LDEN-- 198 (246)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCSSC-CCTT--
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeccccCcchhh-cCHH--
Confidence 23567899999999999999999999 5679999999999999985432 1111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++|+++++..+++|+.+.+||.
T Consensus 199 ~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 243 (246)
T 2uvd_A 199 IKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGG 243 (246)
T ss_dssp HHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECcC
Confidence 111122234567789999999999999998888899999999984
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=313.40 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=208.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++...+.++.++.||++|.++++++++++.+.
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 9999999988887777777655678899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 156 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG--GGSVLIVSSVGAYH---------- 156 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEechhhcC----------
Confidence 999999999999864345666789999999999999999999999999998765 58999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++....... .
T Consensus 157 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~-~ 209 (260)
T 2zat_A 157 -------------------------PFPNLGPYNVSKTALLGLTKNLAVEL-APRNIRVNCLAPGLIKTNFSQVLWMD-K 209 (260)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSTTHHHHSS-H
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcccCccchhcccC-h
Confidence 34567899999999999999999999 56799999999999999854221111 0
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||++++..+++|+.+.+||.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 255 (260)
T 2zat_A 210 ARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGG 255 (260)
T ss_dssp HHHHHHHHHHTCSSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCCEEEECCC
Confidence 1111122334567889999999999999999888899999999985
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=314.36 Aligned_cols=243 Identities=19% Similarity=0.148 Sum_probs=182.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..+++.+++...+.++.++.||++|+++++++++++.+
T Consensus 4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 4 SMRFENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999996 999999999998888888877778899999999999999999999999
Q ss_pred cCCCccEEEecCcccC--CCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYL--PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~--~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.++++|+||||||+.. ...++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++.
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------- 152 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG--GGAIVNQSSTAAW-------- 152 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECC------------
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccc--------
Confidence 9999999999999842 234566789999999999999999999999999998875 5899999998765
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.+...|++||++++.|++.++.|+ .++||+||+|+||+|+|++......
T Consensus 153 ------------------------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~ 201 (253)
T 3qiv_A 153 ------------------------------LYSNYYGLAKVGINGLTQQLSREL-GGRNIRINAIAPGPIDTEANRTTTP 201 (253)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHT-TTTTEEEEEEEC-------------
T ss_pred ------------------------------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecCCcccchhhcCc
Confidence 245579999999999999999999 6679999999999999985433211
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..........+.+++.+|+|+|+.++|++++...+++|+.|.+||.
T Consensus 202 ~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG 248 (253)
T 3qiv_A 202 K--EMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGG 248 (253)
T ss_dssp --------------------CCHHHHHHHHHHSGGGTTCCSCEEEC---
T ss_pred H--HHHHHHhccCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 1 2222334455677888999999999999999888999999999985
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=315.72 Aligned_cols=245 Identities=19% Similarity=0.199 Sum_probs=206.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+ ++.++.+|++|+++++++++++.+
T Consensus 24 ~~~l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 24 YFSLAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999995 99999999888888777776544 788999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC--CCceEEEEeccccccCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY--PSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~--~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++. +.|+||++||.++..
T Consensus 102 ~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~------- 173 (276)
T 2b4q_A 102 LSARLDILVNNAGTSW-GAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS------- 173 (276)
T ss_dssp HCSCCSEEEECCCCCC-CCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC-------
T ss_pred hcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC-------
Confidence 9999999999999864 456778899999999999999999999999999987541 127999999998774
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhh-hHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK-AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++.. .|++||++++.|++.++.|+ .+.||+||+|+||+|+|++... .
T Consensus 174 ----------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~-~ 223 (276)
T 2b4q_A 174 ----------------------------AMGEQAYAYGPSKAALHQLSRMLAKEL-VGEHINVNVIAPGRFPSRMTRH-I 223 (276)
T ss_dssp ----------------------------CCCCSCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSTTTHH-H
T ss_pred ----------------------------CCCCCccccHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCcCcchhh-c
Confidence 223445 89999999999999999999 5679999999999999985422 1
Q ss_pred chhhhhhchhhH--HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~--~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ....... ..+.+++.+|+|+|+.++||++++..+++|++|.+||.
T Consensus 224 ~~~--~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 273 (276)
T 2b4q_A 224 AND--PQALEADSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGG 273 (276)
T ss_dssp HHC--HHHHHHHHHTSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred chh--HHHHHHhhcCCCCCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 110 0011112 34567889999999999999999888999999999985
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=314.87 Aligned_cols=244 Identities=19% Similarity=0.255 Sum_probs=206.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
....++|++|||||++|||+++|++|+++|+ +|++++ |+.+..+...+++...+.++.++.+|++|.++++++++++.
T Consensus 8 ~~~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (256)
T 3ezl_A 8 HMVMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVK 86 (256)
T ss_dssp -----CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999995 888777 66666666666666667789999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+. ....+.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..
T Consensus 87 ~~~g~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 155 (256)
T 3ezl_A 87 AEVGEIDVLVNNAGIT-RDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQK-------- 155 (256)
T ss_dssp HHTCCEEEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCGGG--------
T ss_pred HhcCCCCEEEECCCCC-CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhcc--------
Confidence 9999999999999987 445677889999999999999999999999999998875 48999999998875
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||+|++.|++.++.|+ .+.||+|++|+||+|+|++... ..+
T Consensus 156 ---------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~ 206 (256)
T 3ezl_A 156 ---------------------------GQFGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKA-IRP 206 (256)
T ss_dssp ---------------------------SCSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHT-SCH
T ss_pred ---------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEEECcccCccccc-cCH
Confidence 34677899999999999999999999 5679999999999999985432 222
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 207 --~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (256)
T 3ezl_A 207 --DVLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 252 (256)
T ss_dssp --HHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence 2222334455678889999999999999999888999999999985
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=318.80 Aligned_cols=235 Identities=21% Similarity=0.245 Sum_probs=198.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-------HHHHHHHhccCCCcEEEEEecCCCHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQF 154 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 154 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.++ +++..+.+...+.++.++.||++|+++++++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 468899999999999999999999999996 99999998643 5555666655678899999999999999999
Q ss_pred HHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 155 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
++++.+++|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||..+..+.
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~~- 156 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAI-WLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP--NPHILTLAPPPSLNPA- 156 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCC-CCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS--SCEEEECCCCCCCCHH-
T ss_pred HHHHHHHcCCCCEEEECCCcc-cCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC--CceEEEECChHhcCCC-
Confidence 999999999999999999997 445677889999999999999999999999999998875 5899999998876410
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCC-cccCCCC
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 313 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG-~v~T~~~ 313 (399)
.+++...|++||+|+++|++.++.|+ ++.||+||+|+|| +++|++.
T Consensus 157 --------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~~v~T~~~ 203 (274)
T 3e03_A 157 --------------------------------WWGAHTGYTLAKMGMSLVTLGLAAEF-GPQGVAINALWPRTVIATDAI 203 (274)
T ss_dssp --------------------------------HHHHCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECSBCBCC---
T ss_pred --------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCEEEEEEECCcccccchh
Confidence 03567889999999999999999999 6679999999999 6899854
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
... + ..+..++.+|||+|+.++||+++...++||++|..+|
T Consensus 204 -~~~-~----------~~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i~~~g 244 (274)
T 3e03_A 204 -NML-P----------GVDAAACRRPEIMADAAHAVLTREAAGFHGQFLIDDE 244 (274)
T ss_dssp ----------------CCCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEEEHHH
T ss_pred -hhc-c----------cccccccCCHHHHHHHHHHHhCccccccCCeEEEcCc
Confidence 211 1 0112346799999999999999999999999996555
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=313.32 Aligned_cols=244 Identities=22% Similarity=0.221 Sum_probs=201.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-HHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++|++|||||++|||+++|+.|+++|+ +|++++|+.+. ++++.+++... +.++.++.+|++|+++++++++++.+.
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999995 99999998877 77776666443 567889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 81 ~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 147 (260)
T 1x1t_A 81 MGRIDILVNNAGIQH-TALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGLV---------- 147 (260)
T ss_dssp HSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECcHHhCc----------
Confidence 999999999999863 45666789999999999999999999999999998764 48999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~- 320 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++........
T Consensus 148 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 201 (260)
T 1x1t_A 148 -------------------------ASANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQISALA 201 (260)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC-----------
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-ccCCEEEEEEeecCccCchHHHhhhhhc
Confidence 33567899999999999999999999 677999999999999998643211100
Q ss_pred -------hhhhchh-hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 -------FRLLFPP-FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 -------~~~~~~~-~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....... ....+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG 256 (260)
T 1x1t_A 202 EKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp -------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 0111112 2344667889999999999999998888899999999984
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=314.45 Aligned_cols=243 Identities=16% Similarity=0.125 Sum_probs=204.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH--HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+|++|||||++|||+++|+.|+++|+ +|++++|+.+. +++..+++...+.++.++.+|++|+++++++++++.+.++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999995 99999998877 7777777766667899999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++. +|+||++||..+..
T Consensus 81 ~iD~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------ 146 (258)
T 3a28_C 81 GFDVLVNNAGIA-QIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGV-KGKIINAASIAAIQ------------ 146 (258)
T ss_dssp CCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGTS------------
T ss_pred CCCEEEECCCCC-CCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-CcEEEEECcchhcc------------
Confidence 999999999986 3456678899999999999999999999999999987641 27999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-----
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI----- 318 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~----- 318 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 147 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~ 202 (258)
T 3a28_C 147 -----------------------GFPILSAYSTTKFAVRGLTQAAAQEL-APKGHTVNAYAPGIVGTGMWEQIDAELSKI 202 (258)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSHHHHHHHHHHHHH
T ss_pred -----------------------CCCCchhHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEECCccCChhhhhhhhhhccc
Confidence 34567899999999999999999999 5679999999999999985422110
Q ss_pred --h-hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 --P-LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 --~-~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+ ............+.+++.+|+|+|+.++||++++..+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 254 (258)
T 3a28_C 203 NGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGG 254 (258)
T ss_dssp HCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence 0 001011111224567789999999999999999888999999999985
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=316.06 Aligned_cols=242 Identities=15% Similarity=0.194 Sum_probs=202.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++... +..+.++.+|++++++++++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 81 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE--- 81 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH---
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH---
Confidence 467899999999999999999999999996 9999999998888887777543 4568889999999999887765
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 82 -~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 149 (267)
T 3t4x_A 82 -KYPKVDILINNLGIFE-PVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK--EGRVIFIASEAAIM-------- 149 (267)
T ss_dssp -HCCCCSEEEECCCCCC-CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--EEEEEEECCGGGTS--------
T ss_pred -hcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEEcchhhcc--------
Confidence 4789999999999974 45677889999999999999999999999999998865 58999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI- 318 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~- 318 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||.|+|++......
T Consensus 150 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~ 201 (267)
T 3t4x_A 150 ---------------------------PSQEMAHYSATKTMQLSLSRSLAELT-TGTNVTVNTIMPGSTLTEGVETMLNS 201 (267)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECCBCCHHHHHHHHH
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeCCeecCccHHHHHhh
Confidence 44677899999999999999999999 6779999999999999985321100
Q ss_pred -------hhhhhhchhhHH----HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -------PLFRLLFPPFQK----YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -------~~~~~~~~~~~~----~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.. .+.+++.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 261 (267)
T 3t4x_A 202 LYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGG 261 (267)
T ss_dssp SSTTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCcccCCCHHHHHHHHhhccCCcccccCccCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence 000111111111 2357899999999999999999989999999999995
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=317.73 Aligned_cols=243 Identities=15% Similarity=0.107 Sum_probs=203.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhc-cCCCcEEEEEecCCCHH----------
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAG-MAKENYTIMHLDLASLD---------- 149 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~---------- 149 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++ |+.+.++++.+++. ..+.++.++++|++|.+
T Consensus 5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (291)
T 1e7w_A 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGS 83 (291)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----C
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccc
Confidence 467899999999999999999999999996 999999 99888887777775 44678999999999999
Q ss_pred -------HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCC--------------hhhhhHhhhchhhHHHHHHHHHH
Q 015844 150 -------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT--------------AEGFELSVGTNHLGHFLLSRLLL 208 (399)
Q Consensus 150 -------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~--------------~~~~~~~~~~N~~g~~~l~~~~~ 208 (399)
+++++++++.+.++++|+||||||+.. ..++.+.+ .++|++++++|+.|+++++++++
T Consensus 84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999864 45666778 89999999999999999999999
Q ss_pred HHHhhCCC----CCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHH
Q 015844 209 DDLKQSDY----PSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT 284 (399)
Q Consensus 209 ~~l~~~~~----~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~ 284 (399)
|.|++++. ..|+||++||..+.. +.++...|++||++++.|
T Consensus 163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~-----------------------------------~~~~~~~Y~asKaa~~~l 207 (291)
T 1e7w_A 163 HRVAGTPAKHRGTNYSIINMVDAMTNQ-----------------------------------PLLGYTIYTMAKGALEGL 207 (291)
T ss_dssp HHHHTSCGGGSCSCEEEEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCcEEEEEechhhcC-----------------------------------CCCCCchhHHHHHHHHHH
Confidence 99987531 037999999998874 346778999999999999
Q ss_pred HHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhc-CCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 285 ~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
++.++.|+ ++.||+||+|+||+|+|++ . ..+ ..........+.+ ++.+|+|+|+.++||+++...+++|+++.
T Consensus 208 ~~~la~e~-~~~gI~vn~v~PG~v~T~~--~-~~~--~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~ 281 (291)
T 1e7w_A 208 TRSAALEL-APLQIRVNGVGPGLSVLVD--D-MPP--AVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVK 281 (291)
T ss_dssp HHHHHHHH-GGGTEEEEEEEESSBCCGG--G-SCH--HHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HHHHHHHH-HhcCeEEEEEeeCCccCCc--c-CCH--HHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEEE
Confidence 99999999 5679999999999999985 3 211 1111122234556 78999999999999999988899999999
Q ss_pred cCCC
Q 015844 364 WNKD 367 (399)
Q Consensus 364 ~dg~ 367 (399)
+||.
T Consensus 282 vdGG 285 (291)
T 1e7w_A 282 VDGG 285 (291)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9985
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=311.45 Aligned_cols=246 Identities=20% Similarity=0.215 Sum_probs=207.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++... +.++.++.||++|+++++++++++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 9999999988877777666543 56789999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 82 ~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 149 (263)
T 3ai3_A 82 SFGGADILVNNAGTGS-NETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG--GGAIIHNASICAVQ--------- 149 (263)
T ss_dssp HHSSCSEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhcC---------
Confidence 9999999999999863 45677889999999999999999999999999998764 48999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~- 319 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 150 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 202 (263)
T 3ai3_A 150 --------------------------PLWYEPIYNVTKAALMMFSKTLATEV-IKDNIRVNCINPGLILTPDWIKTAKEL 202 (263)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHHHHH
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhhhhHhh
Confidence 33567799999999999999999999 56799999999999999854221000
Q ss_pred -------hhhhhchhhHH-HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 -------LFRLLFPPFQK-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 -------~~~~~~~~~~~-~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........... .+.+++.+|+|+|+.++||++++..+++|+.|.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG 258 (263)
T 3ai3_A 203 TKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLCSERATYSVGSAYFVDGG 258 (263)
T ss_dssp TTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred hcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 00111111222 4567889999999999999999888899999999985
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=321.18 Aligned_cols=246 Identities=20% Similarity=0.261 Sum_probs=208.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCC--cEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga--~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.++++|++|||||++|||+++|+.|+++|+ .+|++++|+.+.++++.+++... +.++.++.||++|++++++++++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 468899999999999999999999999984 28999999998888888877543 56899999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~------ 180 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN--SGDIVNLGSIAGRD------ 180 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECChhhcC------
Confidence 9999999999999999875456788899999999999999999999999999998765 58999999998874
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++.....
T Consensus 181 -----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~ 230 (287)
T 3rku_A 181 -----------------------------AYPTGSIYCASKFAVGAFTDSLRKEL-INTKIRVILIAPGLVETEFSLVRY 230 (287)
T ss_dssp -----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEESCEESSHHHHHT
T ss_pred -----------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEeCCcCcCccccccc
Confidence 44677899999999999999999999 677999999999999998532211
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..... ............+|+|+|+.++||+++++.+++|+.+.+|+..
T Consensus 231 ~~~~~---~~~~~~~~~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~ 278 (287)
T 3rku_A 231 RGNEE---QAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQ 278 (287)
T ss_dssp TTCHH---HHHHHHTTSCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTE
T ss_pred cCcHH---HHHHhhcccCCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCC
Confidence 11000 1111122233558999999999999999999999999888853
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=319.12 Aligned_cols=253 Identities=19% Similarity=0.187 Sum_probs=203.7
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC------------hHHHHHHHHHhccCCCcEEEEEecCCCH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASL 148 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~ 148 (399)
+.++++|++|||||++|||+++|+.|+++|+ +|++++|+ ...+++...++...+.++.++.||++|+
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR 83 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 4578999999999999999999999999996 99999987 6666777666666678899999999999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
++++++++++.+.++++|+||||||+.... . +.+.++|++++++|+.|+++++++++|+|.+ .|+||++||.+
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~--~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~ 156 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLG--A-HLPVQAFADAFDVDFVGVINTVHAALPYLTS----GASIITTGSVA 156 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCC--T-TCCTHHHHHHHHHHTHHHHHHHHHHGGGCCT----TCEEEEECCHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCccc--C-cCCHHHHHHHhhhhhhhhHHHHHHHHHHhhc----CcEEEEeccch
Confidence 999999999999999999999999986432 2 4789999999999999999999999999843 47999999998
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
+..+.... +..+..+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|
T Consensus 157 ~~~~~~~~------------------------~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v 211 (287)
T 3pxx_A 157 GLIAAAQP------------------------PGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQL-APQSIRANVIHPTNV 211 (287)
T ss_dssp HHHHHHCC------------------------C-----CHHHHHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESSB
T ss_pred hccccccc------------------------ccccccCCCccchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcc
Confidence 77522100 00111234678899999999999999999999 567999999999999
Q ss_pred cCCCCccccch--hh-----hhh------chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 309 ATTGLFREHIP--LF-----RLL------FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 309 ~T~~~~~~~~~--~~-----~~~------~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+|++....... .. ... .......+ +++.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 212 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG 282 (287)
T 3pxx_A 212 NTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMP-TPYVEASDISNAVCFLASDESRYVTGLQFKVDAG 282 (287)
T ss_dssp SSTTTSSHHHHHHHCTTSSSCCHHHHHHHGGGGCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccccccccchhhhhccccccchhHHHHhhhhhhcccC-CCCCCHHHHHhhHheecchhhcCCCCceEeECch
Confidence 99865421100 00 000 00111122 6788999999999999999999999999999995
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=313.46 Aligned_cols=243 Identities=18% Similarity=0.199 Sum_probs=206.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+.+|++|||||++|||+++|++|+++|+ +|++++ |+.+..+...+.+...+.++.++.||++|.++++++++++.+.
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 888887 6666666666666666778999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..
T Consensus 101 ~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 167 (269)
T 3gk3_A 101 FGKVDVLINNAGITR-DATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR--FGRIVNIGSVNGSR---------- 167 (269)
T ss_dssp HSCCSEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH----------
T ss_pred cCCCCEEEECCCcCC-CcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEeCChhhcc----------
Confidence 999999999999874 45677889999999999999999999999999998765 48999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|++.|++.++.++ .+.||+||+|+||+|+|++........
T Consensus 168 -------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~- 220 (269)
T 3gk3_A 168 -------------------------GAFGQANYASAKAGIHGFTKTLALET-AKRGITVNTVSPGYLATAMVEAVPQDV- 220 (269)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTC------
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCcccchhhhhhchhH-
Confidence 34677899999999999999999999 567999999999999998654321111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++||+++...+++|+.|.+||.
T Consensus 221 -~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG 265 (269)
T 3gk3_A 221 -LEAKILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAINGG 265 (269)
T ss_dssp ---CCSGGGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred -HHHHhhhcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCC
Confidence 111233455677889999999999999999988999999999985
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=310.25 Aligned_cols=240 Identities=20% Similarity=0.201 Sum_probs=195.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+. +.+++. +...+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAA---IRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHH---HHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHH---HHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999995 999999987 665542 2233567899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 80 ~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 146 (249)
T 2ew8_A 80 FGRCDILVNNAGIYP-LIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYWL---------- 146 (249)
T ss_dssp HSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGGS----------
T ss_pred cCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhcc----------
Confidence 999999999999863 45667889999999999999999999999999998765 48999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-hh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PL 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-~~ 320 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++...... ..
T Consensus 147 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 200 (249)
T 2ew8_A 147 -------------------------KIEAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAM 200 (249)
T ss_dssp -------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC-------------
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcCcCccchhccccch
Confidence 34567899999999999999999999 5679999999999999985431111 10
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........ .+.+++.+|+|+|+.++||++++..+++|+++.+||.
T Consensus 201 ~~~~~~~~--~~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG 245 (249)
T 2ew8_A 201 FDVLPNML--QAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 245 (249)
T ss_dssp -----CTT--SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred hhHHHHhh--CccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCC
Confidence 01111111 4557789999999999999998888899999999985
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=316.61 Aligned_cols=237 Identities=19% Similarity=0.203 Sum_probs=200.0
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.. ...+..+++|++|+++++++++++.+
T Consensus 9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (269)
T 3vtz_A 9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSD----------VNVSDHFKIDVTNEEEVKEAVEKTTK 77 (269)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--C----------TTSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhc----------cCceeEEEecCCCHHHHHHHHHHHHH
Confidence 4478899999999999999999999999996 999999986542 12467889999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 78 ~~g~iD~lv~nAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 145 (269)
T 3vtz_A 78 KYGRIDILVNNAGIE-QYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG--HGSIINIASVQSYA--------- 145 (269)
T ss_dssp HHSCCCEEEECCCCC-CCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhcc---------
Confidence 999999999999986 445677889999999999999999999999999998765 58999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.++...|++||+|++.|++.++.|+ ++ ||+||+|+||+|+|++......
T Consensus 146 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~-~i~vn~v~PG~v~T~~~~~~~~~~ 197 (269)
T 3vtz_A 146 --------------------------ATKNAAAYVTSKHALLGLTRSVAIDY-AP-KIRCNAVCPGTIMTPMVIKAAKME 197 (269)
T ss_dssp --------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-TT-TEEEEEEEECSBCCHHHHHHHHHH
T ss_pred --------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-cC-CCEEEEEEECCCcCcchhhhhhcc
Confidence 34677899999999999999999999 55 8999999999999985422110
Q ss_pred ------hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 319 ------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.............+.+++.+|+|+|+.++||+++.+.+++|+.|.+||..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 253 (269)
T 3vtz_A 198 VGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGL 253 (269)
T ss_dssp HCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCc
Confidence 00122223334556788999999999999999999899999999999954
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=314.77 Aligned_cols=244 Identities=24% Similarity=0.215 Sum_probs=206.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+++++|++|||||++|||+++|++|+++|+ +|++++| +.+..+...+.+...+.++.++.+|++|.++++++++++.
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999999999996 8999998 4555666666676667889999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.. ...+.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..
T Consensus 103 ~~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 171 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVR-DKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR--FGSVVNVASIIGER-------- 171 (271)
T ss_dssp HHHSSCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH--------
T ss_pred HhcCCCCEEEECCCcCC-CcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEechhhcC--------
Confidence 99999999999999974 45666789999999999999999999999999998875 48999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||++++.|++.++.++ .+.||+||+|+||+|+|++... ..+
T Consensus 172 ---------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~-~~~ 222 (271)
T 4iin_A 172 ---------------------------GNMGQTNYSASKGGMIAMSKSFAYEG-ALRNIRFNSVTPGFIETDMNAN-LKD 222 (271)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCCC--------
T ss_pred ---------------------------CCCCchHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcccCCchhh-hcH
Confidence 34677899999999999999999998 6679999999999999985432 211
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||++++..+++|+.|.+||.
T Consensus 223 --~~~~~~~~~~~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG 268 (271)
T 4iin_A 223 --ELKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGG 268 (271)
T ss_dssp -------CGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --HHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCC
Confidence 1112233345667889999999999999999988999999999984
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=306.84 Aligned_cols=236 Identities=19% Similarity=0.160 Sum_probs=201.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++ + +.++.+|++|+++++++++++.+.+
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV---G--AHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---T--CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---C--CEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999995 9999999988777665544 2 6788999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.+ ..
T Consensus 76 g~id~lvn~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~-~~----------- 140 (245)
T 1uls_A 76 GRLDGVVHYAGIT-RDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTASRV-YL----------- 140 (245)
T ss_dssp SSCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CEEEEEECCGG-GG-----------
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEccch-hc-----------
Confidence 9999999999986 345667889999999999999999999999999998764 58999999988 53
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++... ..+ .
T Consensus 141 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~--~ 192 (245)
T 1uls_A 141 ------------------------GNLGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAK-VPE--K 192 (245)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSS-SCH--H
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCcCcchhh-cCH--H
Confidence 23567899999999999999999999 5679999999999999985432 211 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++|+++++..+++|+.+.+||.
T Consensus 193 ~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 237 (245)
T 1uls_A 193 VREKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGG 237 (245)
T ss_dssp HHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhhCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECCC
Confidence 111122334567889999999999999999888999999999985
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=313.84 Aligned_cols=241 Identities=18% Similarity=0.138 Sum_probs=189.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.+|++|+++++++++++.++
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAEL---GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999996 9999999987777666555 457889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCC---CCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC----CCCceEEEEeccccccCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAK---EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~---~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~----~~~g~iV~vSS~~~~~~~~ 234 (399)
+|++|+||||||+...... ..+.+.++|++++++|+.|+++++++++|+|+++. .+.|+||++||.++..
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~--- 155 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD--- 155 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH---
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc---
Confidence 9999999999998743221 12567899999999999999999999999998751 1258999999998874
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++..
T Consensus 156 --------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~ 202 (257)
T 3tpc_A 156 --------------------------------GQIGQAAYAASKGGVAALTLPAAREL-ARFGIRVVTIAPGIFDTPMMA 202 (257)
T ss_dssp --------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSCC---
T ss_pred --------------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEeCCCCChhhc
Confidence 34677899999999999999999999 667999999999999998653
Q ss_pred cccchhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 315 REHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..+. .........+. +++.+|+|+|+.++||+++ .+++|+.|.+||.
T Consensus 203 ~-~~~~--~~~~~~~~~p~~~r~~~~~dva~~v~~l~s~--~~itG~~i~vdGG 251 (257)
T 3tpc_A 203 G-MPQD--VQDALAASVPFPPRLGRAEEYAALVKHICEN--TMLNGEVIRLDGA 251 (257)
T ss_dssp --------------CCSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTT
T ss_pred c-CCHH--HHHHHHhcCCCCCCCCCHHHHHHHHHHHccc--CCcCCcEEEECCC
Confidence 2 2111 11111223344 7789999999999999986 5799999999995
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=320.12 Aligned_cols=235 Identities=20% Similarity=0.218 Sum_probs=201.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-------HHHHHHHHhccCCCcEEEEEecCCCHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-------KAERAAKSAGMAKENYTIMHLDLASLDSVRQF 154 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 154 (399)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+ .+++..+++...+.++.+++||++|+++++++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 568899999999999999999999999996 9999999865 45566666666677899999999999999999
Q ss_pred HHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 155 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
++++.+.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..+
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~-- 158 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAI-NLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRD--NPHILTLSPPIRLEP-- 158 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCC-CCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSS--SCEEEECCCCCCCSG--
T ss_pred HHHHHHHcCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECChhhccC--
Confidence 999999999999999999997 456778899999999999999999999999999998865 589999999887641
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCC-cccCCCC
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 313 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG-~v~T~~~ 313 (399)
.+++...|++||+|+++|++.++.|+ ++.||+||+|+|| +++|++.
T Consensus 159 --------------------------------~~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~v~PG~~v~t~~~ 205 (285)
T 3sc4_A 159 --------------------------------KWLRPTPYMMAKYGMTLCALGIAEEL-RDAGIASNTLWPRTTVATAAV 205 (285)
T ss_dssp --------------------------------GGSCSHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECSSCBCCHHH
T ss_pred --------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeCCCccccHHH
Confidence 12456889999999999999999999 6679999999999 6888743
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. ... ...+.+++.+|||+|+.++||+++++ +++|+.+.+||
T Consensus 206 ~~-~~~---------~~~~~~r~~~pedvA~~~~~l~s~~~-~~tG~~i~~dg 247 (285)
T 3sc4_A 206 QN-LLG---------GDEAMARSRKPEVYADAAYVVLNKPS-SYTGNTLLCED 247 (285)
T ss_dssp HH-HHT---------SCCCCTTCBCTHHHHHHHHHHHTSCT-TCCSCEEEHHH
T ss_pred Hh-hcc---------ccccccCCCCHHHHHHHHHHHhCCcc-cccceEEEEcC
Confidence 21 100 01134678899999999999999998 89999998776
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=310.42 Aligned_cols=237 Identities=19% Similarity=0.197 Sum_probs=195.4
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+.+|++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++...+.++.++.||++|+++++++++++.+.+|
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999996 999999999998888888877778899999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 81 ~iD~lVnnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~------------ 145 (264)
T 3tfo_A 81 RIDVLVNNAGVM-PLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR--SGQIINIGSIGALS------------ 145 (264)
T ss_dssp CCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC------------
T ss_pred CCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEEcCHHHcc------------
Confidence 999999999996 456777889999999999999999999999999998765 58999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.++...|++||+|+++|++.++.|+ + ||+||+|+||+|+|++...........
T Consensus 146 -----------------------~~~~~~~Y~asKaal~~l~~~la~e~--~-gIrvn~v~PG~v~T~~~~~~~~~~~~~ 199 (264)
T 3tfo_A 146 -----------------------VVPTAAVYCATKFAVRAISDGLRQES--T-NIRVTCVNPGVVESELAGTITHEETMA 199 (264)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHHC--S-SEEEEEEEECCC---------------
T ss_pred -----------------------cCCCChhHHHHHHHHHHHHHHHHHhC--C-CCEEEEEecCCCcCcccccccchhHHH
Confidence 44677899999999999999999997 3 999999999999998553221111010
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. ........+|+|+|+.++||++++....+|..+..++
T Consensus 200 ~~----~~~~~~~~~pedvA~~v~~l~s~~~~~~~~~i~i~p~ 238 (264)
T 3tfo_A 200 AM----DTYRAIALQPADIARAVRQVIEAPQSVDTTEITIRPT 238 (264)
T ss_dssp ------------CCCHHHHHHHHHHHHHSCTTEEEEEEEEEEC
T ss_pred HH----HhhhccCCCHHHHHHHHHHHhcCCccCccceEEEecC
Confidence 00 1111235799999999999999999888888776554
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=309.18 Aligned_cols=236 Identities=19% Similarity=0.194 Sum_probs=188.8
Q ss_pred CcCccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH
Q 015844 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 78 ~~~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
...++++++|++|||||++|||+++|+.|+++|+ +|++++|+.++..+..... .+.++.+|++|++++++++++
T Consensus 19 ~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~ 92 (260)
T 3gem_A 19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQA-----GAVALYGDFSCETGIMAFIDL 92 (260)
T ss_dssp --------CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHH-----TCEEEECCTTSHHHHHHHHHH
T ss_pred cccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhc-----CCeEEECCCCCHHHHHHHHHH
Confidence 3446789999999999999999999999999996 8999999876654444333 267899999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+.+.++++|+||||||+.... . .+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 93 ~~~~~g~iD~lv~nAg~~~~~-~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~------ 162 (260)
T 3gem_A 93 LKTQTSSLRAVVHNASEWLAE-T-PGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE--VADIVHISDDVTRK------ 162 (260)
T ss_dssp HHHHCSCCSEEEECCCCCCCC-C-TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGT------
T ss_pred HHHhcCCCCEEEECCCccCCC-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECChhhcC------
Confidence 999999999999999986433 2 4668899999999999999999999999998875 48999999998874
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|++.|++.++.|+ .+ +|+||+|+||+|+|++....
T Consensus 163 -----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~-~Irvn~v~PG~v~t~~~~~~- 210 (260)
T 3gem_A 163 -----------------------------GSSKHIAYCATKAGLESLTLSFAARF-AP-LVKVNGIAPALLMFQPKDDA- 210 (260)
T ss_dssp -----------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-TT-TCEEEEEEECTTCC-------
T ss_pred -----------------------------CCCCcHhHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEeecccccCCCCCH-
Confidence 44677899999999999999999999 55 79999999999999854211
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+. +.+++|+.|.+||.
T Consensus 211 ----~~~~~~~~~~p~~r~~~~edva~~v~~L~~--~~~itG~~i~vdGG 254 (260)
T 3gem_A 211 ----AYRANALAKSALGIEPGAEVIYQSLRYLLD--STYVTGTTLTVNGG 254 (260)
T ss_dssp -------------CCSCCCCCTHHHHHHHHHHHH--CSSCCSCEEEESTT
T ss_pred ----HHHHHHHhcCCCCCCCCHHHHHHHHHHHhh--CCCCCCCEEEECCC
Confidence 112233445567788999999999999993 56899999999985
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=311.64 Aligned_cols=245 Identities=20% Similarity=0.200 Sum_probs=207.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 99999999888887777776556788999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHH--HhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD--LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~--l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|. |++++ .|+||++||..+..
T Consensus 98 g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 165 (277)
T 2rhc_B 98 GPVDVLVNNAGRPG-GGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG--TGRIVNIASTGGKQ--------- 165 (277)
T ss_dssp CSCSEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHT--EEEEEEECCGGGTS---------
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcC--CeEEEEECcccccc---------
Confidence 99999999999863 456667899999999999999999999999998 87654 47999999998764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 166 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~ 218 (277)
T 2rhc_B 166 --------------------------GVVHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHY 218 (277)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTEEEEEEEEECSBCSHHHHHHHHHH
T ss_pred --------------------------CCCCCccHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEecCcCcCchhhhhhhhc
Confidence 33567899999999999999999999 6679999999999999985322100
Q ss_pred -hh-----hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -PL-----FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -~~-----~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ...........+.+++.+|+|+|+.++||++++..+++|+.+.+||.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 219 SDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp HHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 00 01111122334567889999999999999999888899999999985
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=310.39 Aligned_cols=243 Identities=20% Similarity=0.201 Sum_probs=207.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEE-EEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHI-IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~v-v~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++.+|++|||||++|||+++|++|+++|+ +| ++..|+.+..++..+++...+.++.++.+|++|+++++++++++.+
T Consensus 22 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 22 SNAMSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 367889999999999999999999999996 66 4467888888888888777778899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.+++.|.+.. +.|+||++||.++..
T Consensus 101 ~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~~--------- 169 (267)
T 4iiu_A 101 QHGAWYGVVSNAGIAR-DAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGAR-QGGRIITLSSVSGVM--------- 169 (267)
T ss_dssp HHCCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCHHHHH---------
T ss_pred HhCCccEEEECCCCCC-CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcchHhcc---------
Confidence 9999999999999974 45677889999999999999999999999999886332 158999999998875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.|+ .+.||+|++|+||+|+|++....
T Consensus 170 --------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~---- 218 (267)
T 4iiu_A 170 --------------------------GNRGQVNYSAAKAGIIGATKALAIEL-AKRKITVNCIAPGLIDTGMIEME---- 218 (267)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTCCCC----
T ss_pred --------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEEeeecCCccccc----
Confidence 34677899999999999999999999 56799999999999999865432
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........+.+++.+|+|+|+.++||+++...+++|+.+.+||.
T Consensus 219 ~~~~~~~~~~~p~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 219 ESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp HHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 12223344455678889999999999999999888999999999984
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=308.90 Aligned_cols=244 Identities=16% Similarity=0.175 Sum_probs=203.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.++.++..+++... +.++.++.+|++|+++++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 9999999988877777666432 33788999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++ +|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||..+..
T Consensus 83 ~~g-id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 149 (260)
T 2z1n_A 83 LGG-ADILVYSTGGP-RPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG--WGRMVYIGSVTLLR--------- 149 (260)
T ss_dssp TTC-CSEEEECCCCC-CCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred hcC-CCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhcC---------
Confidence 998 99999999986 345666789999999999999999999999999998765 48999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc----
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE---- 316 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~---- 316 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++....
T Consensus 150 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 202 (260)
T 2z1n_A 150 --------------------------PWQDLALSNIMRLPVIGVVRTLALEL-APHGVTVNAVLPSLILTDRVRSLAEER 202 (260)
T ss_dssp --------------------------CCTTBHHHHHHTHHHHHHHHHHHHHH-GGGTEEEEEEEECHHHHCCCC------
T ss_pred --------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEECCcccchhhhhhhhh
Confidence 34567899999999999999999999 56799999999999999865310
Q ss_pred ----cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 ----HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ----~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..+............+.+++.+|+|+|+.++||++++..+++|+++.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG 257 (260)
T 2z1n_A 203 ARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASEKASFITGAVIPVDGG 257 (260)
T ss_dssp -----------------CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hcccCCcHHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 001000011122234567788999999999999999888999999999984
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=308.53 Aligned_cols=243 Identities=20% Similarity=0.163 Sum_probs=204.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|.++++++++++.+.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999995 99999999888887777776556788999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++. .|+||++||..+..
T Consensus 81 d~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-------------- 144 (256)
T 1geg_A 81 DVIVNNAGVA-PSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGHV-------------- 144 (256)
T ss_dssp CEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS--------------
T ss_pred CEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CCEEEEECchhhcC--------------
Confidence 9999999986 3456677899999999999999999999999999987531 37999999998874
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---h---
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---P--- 319 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~---~--- 319 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++...... .
T Consensus 145 ---------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 202 (256)
T 1geg_A 145 ---------------------GNPELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAG 202 (256)
T ss_dssp ---------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHT
T ss_pred ---------------------CCCCchhHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCCccchhhhhhhhcccccc
Confidence 33567899999999999999999999 5679999999999999985322100 0
Q ss_pred --hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 --LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 --~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++||++++..+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 252 (256)
T 1geg_A 203 KPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGG 252 (256)
T ss_dssp CCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 000001111224567789999999999999999888999999999985
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=302.53 Aligned_cols=227 Identities=18% Similarity=0.218 Sum_probs=188.9
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
|.+|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++. .++.++.+|++|+++++++++++.+.++
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~g 76 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLG---NAVIGIVADLAHHEDVDVAFAAAVEWGG 76 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999996 99999999988888877773 3689999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ ++||++||.++..
T Consensus 77 ~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~------------ 140 (235)
T 3l6e_A 77 LPELVLHCAGTG-EFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG---GVLANVLSSAAQV------------ 140 (235)
T ss_dssp SCSEEEEECCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---EEEEEECCEECCS------------
T ss_pred CCcEEEECCCCC-CCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEEeCHHhcC------------
Confidence 999999999986 445677889999999999999999999999999998764 6999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.++...|++||+|+++|++.++.|+ ++.||+||+|+||+|+|++..... .
T Consensus 141 -----------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~-~---- 191 (235)
T 3l6e_A 141 -----------------------GKANESLYCASKWGMRGFLESLRAEL-KDSPLRLVNLYPSGIRSEFWDNTD-H---- 191 (235)
T ss_dssp -----------------------SCSSHHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEEEEECCCC-----------
T ss_pred -----------------------CCCCCcHHHHHHHHHHHHHHHHHHHh-hccCCEEEEEeCCCccCcchhccC-C----
Confidence 44678899999999999999999999 677999999999999998543211 1
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNK 366 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg 366 (399)
.+..++.+|||+|+.++|+++++ ..+++|.++....
T Consensus 192 -------~~~~~~~~pedvA~~v~~l~~~~~~~~i~~i~~~~~~ 228 (235)
T 3l6e_A 192 -------VDPSGFMTPEDAAAYMLDALEARSSCHVTDLFIGRNE 228 (235)
T ss_dssp ------------CBCHHHHHHHHHHHTCCCSSEEEEEEEEEECC
T ss_pred -------CCCcCCCCHHHHHHHHHHHHhCCCCcceeeEEEecCC
Confidence 12346789999999999999854 4468888876554
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=316.65 Aligned_cols=246 Identities=17% Similarity=0.147 Sum_probs=205.3
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCC---cEEEEEecCCCHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~---~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
++++++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++...+. ++.++.||++|++++++++++
T Consensus 21 m~~l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 21 MARFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp --CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 3468899999999999999999999999996 999999999888877777755555 789999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCC--CCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAK--EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
+.+.++++|+||||||+... .+ +.+.+.++|++++++|+.|+++++++++|.|++++ |+||++||.++..
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~---g~IV~isS~~~~~---- 171 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLA-DGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GEIVNVSSIVAGP---- 171 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCC-CSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECCGGGSS----
T ss_pred HHHhcCCCCEEEECCCcCcC-CCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC---CEEEEEcCchhcc----
Confidence 99999999999999998643 44 66789999999999999999999999999998753 7999999998764
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+. ++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++..
T Consensus 172 -------------------------------~~~~~~~~Y~asKaa~~~l~~~la~el-~~~gI~v~~v~PG~v~T~~~~ 219 (297)
T 1xhl_A 172 -------------------------------QAHSGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMG 219 (297)
T ss_dssp -------------------------------SCCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHH
T ss_pred -------------------------------CCCCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcCcccc
Confidence 22 567789999999999999999999 567999999999999998543
Q ss_pred ccc-ch-----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCCC
Q 015844 315 REH-IP-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~-~~-----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg~ 367 (399)
... .. ............+.+++.+|+|+|+.++||++++ ..+++|+++.+||.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG 279 (297)
T 1xhl_A 220 AMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGG 279 (297)
T ss_dssp HTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred ccccccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCC
Confidence 211 00 0001111112245677899999999999999987 77899999999985
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=309.38 Aligned_cols=232 Identities=22% Similarity=0.166 Sum_probs=185.0
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+..+.+|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++. .++.++.||++|+++++++++++.+
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIG---DDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp -----CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT---SCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999996 99999999988888877763 5788999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++.++|+||++||.++..
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~--------- 169 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS--------- 169 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS---------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC---------
Confidence 99999999999999755467778899999999999999999999999999998753358999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|+++|++.++.|+ .+.||+||+|+||+|+|++... ....
T Consensus 170 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~-~~~~ 221 (272)
T 4dyv_A 170 --------------------------PRPYSAPYTATKHAITGLTKSTSLDG-RVHDIACGQIDIGNADTPMAQK-MKAG 221 (272)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEEECC-----------
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCEEEEEEEECcccChhhhh-hccc
Confidence 44677899999999999999999999 5679999999999999985432 1111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~ 356 (399)
........+.+++.+|+|+|+.++||++.+...
T Consensus 222 ---~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~ 254 (272)
T 4dyv_A 222 ---VPQADLSIKVEPVMDVAHVASAVVYMASLPLDA 254 (272)
T ss_dssp -----------------CHHHHHHHHHHHHHSCTTS
T ss_pred ---chhhhhcccccCCCCHHHHHHHHHHHhCCCCcC
Confidence 111223345567889999999999999987654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=314.52 Aligned_cols=243 Identities=19% Similarity=0.149 Sum_probs=196.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCC-cEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+. .+.+++||++|+++++++++++.+
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999996 999999999888888777754433 358999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++.+.|+||++||.++..
T Consensus 108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~--------- 178 (281)
T 4dry_A 108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT--------- 178 (281)
T ss_dssp HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC---------
Confidence 99999999999998755567778899999999999999999999999999988753358999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|+++|++.++.|+ ++.||+||+|+||+|+|++.... .+.
T Consensus 179 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~-~~~ 230 (281)
T 4dry_A 179 --------------------------PRPNSAPYTATKHAITGLTKSTALDG-RMHDIACGQIDIGNAATDMTARM-STG 230 (281)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEECBCC--------CE
T ss_pred --------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcCcChhhhhh-cch
Confidence 44678899999999999999999999 66799999999999999855321 111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCC-CCceEEccC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWN 365 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~-~~G~~~~~d 365 (399)
........+.+++.+|||+|+.++||++.+... +++..+...
T Consensus 231 ---~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~i~~~~i~p~ 273 (281)
T 4dry_A 231 ---VLQANGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTMTVMAT 273 (281)
T ss_dssp ---EECTTSCEEECCCBCHHHHHHHHHHHHHSCTTEEEEEEEEEET
T ss_pred ---hhhhhhcccccCCCCHHHHHHHHHHHhCCCccCccccEEEEec
Confidence 111122234567889999999999999987653 555555443
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=311.82 Aligned_cols=247 Identities=15% Similarity=0.105 Sum_probs=203.1
Q ss_pred cCccccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 79 QGKKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 79 ~~~~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
..+..+++|++|||||+ +|||+++|+.|+++|+ +|++++|+. .++..+++.....++.++.||++|.++++++++
T Consensus 19 ~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 19 SHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp ---CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHH
T ss_pred CcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHH
Confidence 34557889999999988 7899999999999996 999999987 223333333333468899999999999999999
Q ss_pred HHHHcCCCccEEEecCcccCCC---CCCCC-CChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPT---AKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~---~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~ 232 (399)
++.+.++++|+||||||+.... ..+.+ .+.++|++++++|+.++++++++++|.|.++ .|+||++||.++..
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~---~g~iv~isS~~~~~- 171 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR---NASMVALTYIGAEK- 171 (280)
T ss_dssp HHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT---TCEEEEEECGGGTS-
T ss_pred HHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEEEecccccc-
Confidence 9999999999999999986431 23333 7899999999999999999999999999875 37999999998874
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++
T Consensus 172 ----------------------------------~~~~~~~Y~asKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~ 216 (280)
T 3nrc_A 172 ----------------------------------AMPSYNTMGVAKASLEATVRYTALAL-GEDGIKVNAVSAGPIKTLA 216 (280)
T ss_dssp ----------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCCSG
T ss_pred ----------------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeccccchh
Confidence 44678899999999999999999999 5679999999999999985
Q ss_pred CccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
... ...............+.+++.+|+|+|+.++||+++...+++|+.|.+||..
T Consensus 217 ~~~-~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~ 271 (280)
T 3nrc_A 217 ASG-ISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGY 271 (280)
T ss_dssp GGG-CTTHHHHHHHHHHHSTTCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTG
T ss_pred hhc-CcchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCc
Confidence 432 2222223333444556788999999999999999998889999999999953
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=311.32 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=199.5
Q ss_pred ccccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
...+++|++|||||+ +|||+++|++|+++|+ +|++++|+....+.+ +++.....++.++.||++|+++++++++++
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRI-TEFAAEFGSELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH-HHHHHHTTCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHH-HHHHHHcCCcEEEECCCCCHHHHHHHHHHH
Confidence 457889999999999 9999999999999996 999999985433333 333222345789999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCC---CCCCC-CChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPT---AKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~---~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
.+.++++|+||||||+.... ..+.+ .+.++|++++++|+.++++++++++|.|++ .|+||++||.++..
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~isS~~~~~--- 159 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD----DASLLTLSYLGAER--- 159 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE----EEEEEEEECGGGTS---
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc----CceEEEEecccccc---
Confidence 99999999999999986431 33444 899999999999999999999999999875 37999999998874
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.++...|++||+|+++|++.++.|+ .+.||+||+|+||+|+|++..
T Consensus 160 --------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~ 206 (271)
T 3ek2_A 160 --------------------------------AIPNYNTMGLAKAALEASVRYLAVSL-GAKGVRVNAISAGPIKTLAAS 206 (271)
T ss_dssp --------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCC-----C
T ss_pred --------------------------------CCCCccchhHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccchhhh
Confidence 34677899999999999999999999 677999999999999998543
Q ss_pred cccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
. ...............+.+++.+|+|+|+.++||+++.+.+++|+.|.+||..
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~ 259 (271)
T 3ek2_A 207 G-IKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGF 259 (271)
T ss_dssp C-CHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTG
T ss_pred c-ccchHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCe
Confidence 2 2222222333444566788999999999999999998889999999999964
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=313.12 Aligned_cols=245 Identities=16% Similarity=0.145 Sum_probs=205.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCC---cEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~---~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+. ++.++.||++|+++++++++++.
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 81 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999995 999999999888887777765554 78999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCC----CCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAK----EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~----~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
++++++|+||||||+... .+ +.+.+.++|++++++|+.|+++++++++|.|++++ |+||++||.++..
T Consensus 82 ~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~---- 153 (280)
T 1xkq_A 82 KQFGKIDVLVNNAGAAIP-DAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSSIVAGP---- 153 (280)
T ss_dssp HHHSCCCEEEECCCCCCC-CTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGSS----
T ss_pred HhcCCCCEEEECCCCCCC-CCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC---CcEEEecCccccC----
Confidence 999999999999998643 34 56788999999999999999999999999998653 7999999998764
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+. ++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++..
T Consensus 154 -------------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~ 201 (280)
T 1xkq_A 154 -------------------------------QAQPDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTN 201 (280)
T ss_dssp -------------------------------SCCCSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHH
T ss_pred -------------------------------CCCCcccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEeeCcCcCCccc
Confidence 22 567799999999999999999999 677999999999999998543
Q ss_pred ccc-ch-----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCCCC
Q 015844 315 REH-IP-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKDS 368 (399)
Q Consensus 315 ~~~-~~-----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg~~ 368 (399)
... .. ............+.+++.+|+|+|+.++||++++ ..+++|+++.+||..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~ 262 (280)
T 1xkq_A 202 AMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGT 262 (280)
T ss_dssp HTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred ccccccccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCc
Confidence 210 00 0001111112245677899999999999999987 778999999999853
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=308.42 Aligned_cols=240 Identities=20% Similarity=0.151 Sum_probs=203.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++ +.++.++.+|++|+++++++++++.+.+
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 9999999988777766655 4578899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..
T Consensus 78 g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 143 (254)
T 1hdc_A 78 GSVDGLVNNAGIST-GMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGLM----------- 143 (254)
T ss_dssp SCCCEEEECCCCCC-CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhcc-----------
Confidence 99999999999863 45666789999999999999999999999999998764 48999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++... ..+ .
T Consensus 144 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~--~ 195 (254)
T 1hdc_A 144 ------------------------GLALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAE-TGI--R 195 (254)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHH-HTC--C
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccCcCccccc-cch--h
Confidence 33567899999999999999999999 5679999999999999985321 111 0
Q ss_pred hhchhhHHHHhcCCC-ChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 323 LLFPPFQKYITKGYV-SEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~-~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.........+.+++. +|+|+|+.++|++++++.+++|+++.+||..
T Consensus 196 ~~~~~~~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 242 (254)
T 1hdc_A 196 QGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCCc
Confidence 001111223556788 9999999999999998888999999999853
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=308.73 Aligned_cols=245 Identities=12% Similarity=0.114 Sum_probs=206.1
Q ss_pred cccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCC-cEEEEEecCCCHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 82 ~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+++++|++|||||+ +|||+++|++|+++|+ +|++++|+....+...+.....+. ++.++.||++|+++++++++++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999 6699999999999996 999999987554544444443333 7899999999999999999999
Q ss_pred HHcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
.+.++++|+||||||+... ...+.+.+.++|++++++|+.+++++++.++|.|++ +|+||++||.++..
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~isS~~~~~---- 153 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE----GGSIVTLTYLGGEL---- 153 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT----CEEEEEEECGGGTS----
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC----CceEEEEecccccc----
Confidence 9999999999999998642 345667899999999999999999999999999875 47999999998874
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++...
T Consensus 154 -------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 201 (266)
T 3oig_A 154 -------------------------------VMPNYNVMGVAKASLDASVKYLAADL-GKENIRVNSISAGPIRTLSAKG 201 (266)
T ss_dssp -------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGTT
T ss_pred -------------------------------cCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCccccccccc
Confidence 44678899999999999999999999 5679999999999999985433
Q ss_pred ccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
...............+.+++.+|+|+|+.++||+++...+++|+.|.+||..
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 253 (266)
T 3oig_A 202 -ISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGF 253 (266)
T ss_dssp -CTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -ccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCe
Confidence 2222233333445566788899999999999999998889999999999953
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=311.77 Aligned_cols=244 Identities=17% Similarity=0.145 Sum_probs=200.1
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhc-cCCCcEEEEEecCCC----HHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAG-MAKENYTIMHLDLAS----LDSVRQF 154 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~-~~~~~~~~~~~Dvs~----~~~v~~~ 154 (399)
.+++++|++|||||++|||+++|+.|+++|+ +|++++|+. +.++++.+++. ..+.++.++.+|++| .++++++
T Consensus 18 ~~~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHH
Confidence 3468899999999999999999999999996 999999998 77777777765 446689999999999 9999999
Q ss_pred HHHHHHcCCCccEEEecCcccCCCCCC-----CC-----CChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC----CCce
Q 015844 155 VDTFRRSGRPLDVLVCNAAVYLPTAKE-----PT-----FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKR 220 (399)
Q Consensus 155 ~~~~~~~~g~id~lv~nAg~~~~~~~~-----~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~----~~g~ 220 (399)
++++.+.++++|+||||||+... .++ .+ .+.++|++++++|+.|++++++.++|.|++++. ..|+
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~ 175 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYP-TPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLS 175 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCC-CCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCC-CccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeE
Confidence 99999999999999999998643 344 45 788999999999999999999999999987531 1379
Q ss_pred EEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEE
Q 015844 221 LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300 (399)
Q Consensus 221 iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v 300 (399)
||++||..+.. +.++...|++||++++.|++.++.|+ .+.||+|
T Consensus 176 iv~isS~~~~~-----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~v 219 (288)
T 2x9g_A 176 IVNLCDAMVDQ-----------------------------------PCMAFSLYNMGKHALVGLTQSAALEL-APYGIRV 219 (288)
T ss_dssp EEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEE
T ss_pred EEEEecccccC-----------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hccCeEE
Confidence 99999998764 34677899999999999999999999 5679999
Q ss_pred EEeeCCcccCCCCccccchhhhhhchhhHHHHhcCC-CChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGY-VSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 301 ~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|+|+||+|+|++ ... + ..........+.+++ .+|+|+|+.++||+++...+++|+++.+||.
T Consensus 220 n~v~PG~v~t~~--~~~-~--~~~~~~~~~~p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG 282 (288)
T 2x9g_A 220 NGVAPGVSLLPV--AMG-E--EEKDKWRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGG 282 (288)
T ss_dssp EEEEESSCSCCT--TSC-H--HHHHHHHHTCTTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEeccccCcc--ccC-h--HHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcc
Confidence 999999999986 221 1 111122233456777 8999999999999999888999999999985
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=308.72 Aligned_cols=233 Identities=17% Similarity=0.269 Sum_probs=195.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--C-CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--K-ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~-~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++... + .++.++.||++|.++++++++++.
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999996 9999999998888887776443 2 678899999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.. ...+ +.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 83 ~~~g~iD~lvnnAg~~~-~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 150 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFM-DGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK--NGYIFNVASRAAKY-------- 150 (250)
T ss_dssp HHHCCEEEEEECCCCCC-CCCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECC-------------
T ss_pred HhcCCCCEEEECCCcCC-CCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEEEccHHhcC--------
Confidence 99999999999999964 3455 678899999999999999999999999998765 58999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||+|+++|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 151 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~- 201 (250)
T 3nyw_A 151 ---------------------------GFADGGIYGSTKFALLGLAESLYREL-APLGIRVTTLCPGWVNTDMAKKAGT- 201 (250)
T ss_dssp -----------------------------CCTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHHTTC-
T ss_pred ---------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCchhhhcCC-
Confidence 22346789999999999999999999 5679999999999999984322110
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC-CCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL-TKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~-~~~G~~~~~dg~ 367 (399)
..+.+++.+|+|+|+.++||++++.. .++|..+.+||.
T Consensus 202 ----------~~~~~~~~~p~dva~~v~~l~s~~~~~~~~~~~i~vd~~ 240 (250)
T 3nyw_A 202 ----------PFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKS 240 (250)
T ss_dssp ----------CSCGGGSBCHHHHHHHHHHHHTSCTTEECCEEEEEEHHH
T ss_pred ----------CcccccCCCHHHHHHHHHHHHcCCCceEeeEEEEEeecc
Confidence 12345678999999999999997655 588888999984
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=305.37 Aligned_cols=236 Identities=19% Similarity=0.215 Sum_probs=199.7
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+..+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|.++++++++++.+
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 4568899999999999999999999999996 899999999998888888877778899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.....++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..
T Consensus 103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 171 (262)
T 3rkr_A 103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK--RGHIINISSLAGKN--------- 171 (262)
T ss_dssp HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CCEEEEECSSCSSC---------
T ss_pred hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CceEEEEechhhcC---------
Confidence 9999999999999854556777889999999999999999999999999998865 57999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.++ .+.||+|++|+||+|+|++... ..
T Consensus 172 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~-- 221 (262)
T 3rkr_A 172 --------------------------PVADGAAYTASKWGLNGLMTSAAEEL-RQHQVRVSLVAPGSVRTEFGVG-LS-- 221 (262)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC------------
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCCcCCcccc-cc--
Confidence 44677899999999999999999999 5679999999999999985422 11
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
...+..++.+|+|+|+.++||++++....+|+.+..+.
T Consensus 222 --------~~~~~~~~~~p~dvA~~v~~l~s~~~~~~~g~~~i~p~ 259 (262)
T 3rkr_A 222 --------AKKSALGAIEPDDIADVVALLATQADQSFISEVLVRPT 259 (262)
T ss_dssp ---------------CCCHHHHHHHHHHHHTCCTTCCEEEEEEECC
T ss_pred --------cccccccCCCHHHHHHHHHHHhcCccccccCcEEeccc
Confidence 11234567899999999999999998888898876554
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=301.77 Aligned_cols=235 Identities=23% Similarity=0.280 Sum_probs=199.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++...+.++.++.+|++|+++++++++++.+.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 99999999888888877776556789999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ |+||++||.++..
T Consensus 83 g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 147 (247)
T 2jah_A 83 GGLDILVNNAGIM-LLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK---GTVVQMSSIAGRV----------- 147 (247)
T ss_dssp SCCSEEEECCCCC-CCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTC-----------
T ss_pred CCCCEEEECCCCC-CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC---CEEEEEccHHhcC-----------
Confidence 9999999999986 446677889999999999999999999999999998753 7999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.......
T Consensus 148 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~--- 199 (247)
T 2jah_A 148 ------------------------NVRNAAVYQATKFGVNAFSETLRQEV-TERGVRVVVIEPGTTDTELRGHITHT--- 199 (247)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGCCCH---
T ss_pred ------------------------CCCCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCCCCCcchhcccch---
Confidence 34567899999999999999999999 56799999999999999854321111
Q ss_pred hhchhhHHHHhcCC--CChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 323 LLFPPFQKYITKGY--VSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 323 ~~~~~~~~~~~~~~--~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
.....+...+ +++ .+|+|+|+.++|+++++..+.++.+.
T Consensus 200 ~~~~~~~~~~-~~~~~~~pedvA~~v~~l~s~~~~~~~~~i~ 240 (247)
T 2jah_A 200 ATKEMYEQRI-SQIRKLQAQDIAEAVRYAVTAPHHATVHEIF 240 (247)
T ss_dssp HHHHHHHHHT-TTSCCBCHHHHHHHHHHHHHSCTTEEEEEEE
T ss_pred hhHHHHHhcc-cccCCCCHHHHHHHHHHHhCCCccCccceEE
Confidence 1111222233 455 89999999999999998777666643
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-41 Score=310.56 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=196.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh---ccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA---GMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~---~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++ ...+.++.++.+|++|+++++++++++.
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence 46889999999999999999999999995 9999999988888777776 4445678999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCC----ChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc-ccCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTF----TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTL 234 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~-~~~~~ 234 (399)
+.++++|+||||||+.. ..++.+. +.++|++++++|+.|+++++++++|.|++++ |+||++||..+ ..
T Consensus 82 ~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---g~iv~isS~~~~~~--- 154 (278)
T 1spx_A 82 GKFGKLDILVNNAGAAI-PDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSIASGLH--- 154 (278)
T ss_dssp HHHSCCCEEEECCC--------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTTSSSS---
T ss_pred HHcCCCCEEEECCCCCC-CcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEeccccccc---
Confidence 99999999999999863 3455566 8999999999999999999999999998753 79999999887 53
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++..
T Consensus 155 --------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 201 (278)
T 1spx_A 155 --------------------------------ATPDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGS 201 (278)
T ss_dssp --------------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC--
T ss_pred --------------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccCcccc
Confidence 33567789999999999999999999 567999999999999998643
Q ss_pred cccchhhhh------hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCC-CCceEEccCCC
Q 015844 315 REHIPLFRL------LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~~~~------~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~-~~G~~~~~dg~ 367 (399)
....+.... ........+.+++.+|+|+|+.++||++++..+ ++|+++.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG 261 (278)
T 1spx_A 202 AMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGG 261 (278)
T ss_dssp ------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred ccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCC
Confidence 211110000 111222345677899999999999999987666 99999999985
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-41 Score=311.39 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=202.4
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+. .+...+++...+.++.++.+|++|.++++++++++.
T Consensus 24 ~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 24 SASLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999999999996 89999988643 455556665556789999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.. .|+||++||..+..+.
T Consensus 103 ~~~g~iD~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~~------ 171 (283)
T 1g0o_A 103 KIFGKLDIVCSNSGVV-SFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI----GGRLILMGSITGQAKA------ 171 (283)
T ss_dssp HHHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT----TCEEEEECCGGGTCSS------
T ss_pred HHcCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCeEEEEechhhccCC------
Confidence 9999999999999986 3456677899999999999999999999999999932 4799999999876411
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI- 318 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~- 318 (399)
.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 172 ----------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 222 (283)
T 1g0o_A 172 ----------------------------VPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCRE 222 (283)
T ss_dssp ----------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGG
T ss_pred ----------------------------CCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccchhhhhhhhh
Confidence 1236789999999999999999999 5679999999999999985322100
Q ss_pred --hh-----hhhhchhhH--HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 --PL-----FRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 --~~-----~~~~~~~~~--~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+. ......... ..+.+++.+|+|+|+.++||+++.+.+++|+.+.+||.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG 280 (283)
T 1g0o_A 223 YIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG 280 (283)
T ss_dssp GSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccccccccCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence 00 011111111 34567889999999999999999888999999999984
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=306.12 Aligned_cols=237 Identities=19% Similarity=0.174 Sum_probs=199.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++. .++.++.+|++|+++++++++++.+.+
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE---AEAIAVVADVSDPKAVEAVFAEALEEF 78 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC---SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 99999999888777766653 568899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.| ++ .|+||++||.++. +
T Consensus 79 g~iD~lvnnAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~---~g~iv~isS~~~~-~---------- 142 (263)
T 2a4k_A 79 GRLHGVAHFAGVA-HSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE---GGSLVLTGSVAGL-G---------- 142 (263)
T ss_dssp SCCCEEEEGGGGT-TTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT---TCEEEEECCCTTC-C----------
T ss_pred CCCcEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc---CCEEEEEecchhc-C----------
Confidence 9999999999986 34567788999999999999999999999999999 43 3799999998875 2
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++... ..+ .
T Consensus 143 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~--~ 193 (263)
T 2a4k_A 143 -------------------------AFGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAG-LPP--W 193 (263)
T ss_dssp -------------------------HHHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTT-SCH--H
T ss_pred -------------------------CCCcHHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCcCcCchhhh-cCH--H
Confidence 2567899999999999999999999 6679999999999999985432 211 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.........+.+++.+|+|+|+.++|+++++..+++|+++.+||..
T Consensus 194 ~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 239 (263)
T 2a4k_A 194 AWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGR 239 (263)
T ss_dssp HHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCc
Confidence 1111223345677899999999999999998889999999999863
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=315.37 Aligned_cols=242 Identities=15% Similarity=0.108 Sum_probs=203.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee-cChHHHHHHHHHhc-cCCCcEEEEEecCCCHH-----------
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAG-MAKENYTIMHLDLASLD----------- 149 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~-r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~----------- 149 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++ |+.+.++++.+++. ..+.++.++.+|++|.+
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------C
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccc
Confidence 47899999999999999999999999996 999999 99888887777765 44568999999999999
Q ss_pred ------HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCC--------------hhhhhHhhhchhhHHHHHHHHHHH
Q 015844 150 ------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT--------------AEGFELSVGTNHLGHFLLSRLLLD 209 (399)
Q Consensus 150 ------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~--------------~~~~~~~~~~N~~g~~~l~~~~~~ 209 (399)
+++++++++.+.++++|+||||||+.. ..++.+.+ .++|++++++|+.|+++++++++|
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 200 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 200 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 45666777 899999999999999999999999
Q ss_pred HHhhCCC----CCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHH
Q 015844 210 DLKQSDY----PSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM 285 (399)
Q Consensus 210 ~l~~~~~----~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~ 285 (399)
.|.+++. ..|+||++||..+.. +.++...|++||++++.|+
T Consensus 201 ~m~~~~~~~~~~~g~IV~isS~~~~~-----------------------------------~~~~~~~Y~asKaal~~l~ 245 (328)
T 2qhx_A 201 RVAGTPAKHRGTNYSIINMVDAMTNQ-----------------------------------PLLGYTIYTMAKGALEGLT 245 (328)
T ss_dssp HHHHSCGGGSCSCEEEEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcCCCCCcEEEEECchhhcc-----------------------------------CCCCcHHHHHHHHHHHHHH
Confidence 9987530 037999999998874 3467789999999999999
Q ss_pred HHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhc-CCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 286 QEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 286 ~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
+.|+.|+ ++.||+||+|+||+|+|++ ... + ..........+.+ ++.+|+|+|+.++||+++...+++|++|.+
T Consensus 246 ~~la~el-~~~gIrvn~v~PG~v~T~~--~~~-~--~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~v 319 (328)
T 2qhx_A 246 RSAALEL-APLQIRVNGVGPGLSVLVD--DMP-P--AVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKV 319 (328)
T ss_dssp HHHHHHH-GGGTEEEEEEEESSBSCCC--CSC-H--HHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred HHHHHHH-hhcCcEEEEEecCcccCCc--ccc-H--HHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEE
Confidence 9999999 5679999999999999986 322 2 1111122234556 789999999999999998888999999999
Q ss_pred CCC
Q 015844 365 NKD 367 (399)
Q Consensus 365 dg~ 367 (399)
||.
T Consensus 320 dGG 322 (328)
T 2qhx_A 320 DGG 322 (328)
T ss_dssp STT
T ss_pred CCC
Confidence 985
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=302.84 Aligned_cols=234 Identities=22% Similarity=0.230 Sum_probs=201.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecC--CCHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDL--ASLDSVRQFVDTF 158 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv--s~~~~v~~~~~~~ 158 (399)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+ .++.++.+|+ +|.++++++++++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence 368899999999999999999999999995 99999999998888888776544 4667777777 9999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+.++++|+||||||+.....++.+.+.++|++++++|+.|++++++.++|+|++++ .|+||++||..+..
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~------- 159 (247)
T 3i1j_A 89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE--DASIAFTSSSVGRK------- 159 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS--SEEEEEECCGGGTS-------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCeEEEEcchhhcC-------
Confidence 999999999999999875666777889999999999999999999999999998765 58999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|++.|++.++.|+....||+||+|+||+|+|++.....
T Consensus 160 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~- 210 (247)
T 3i1j_A 160 ----------------------------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAY- 210 (247)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHS-
T ss_pred ----------------------------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhcc-
Confidence 346778999999999999999999994337999999999999997532211
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
+. ....+..+|+|+|+.++||+++.+.++||+.|..
T Consensus 211 ~~----------~~~~~~~~p~dva~~~~~l~s~~~~~itG~~i~~ 246 (247)
T 3i1j_A 211 PD----------ENPLNNPAPEDIMPVYLYLMGPDSTGINGQALNA 246 (247)
T ss_dssp TT----------SCGGGSCCGGGGTHHHHHHHSGGGTTCCSCEEEC
T ss_pred cc----------cCccCCCCHHHHHHHHHHHhCchhccccCeeecC
Confidence 10 0112467999999999999999999999999865
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=305.89 Aligned_cols=244 Identities=19% Similarity=0.182 Sum_probs=195.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc-
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS- 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~- 161 (399)
+|++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999995 9999999988888777777655678899999999999999999999886
Q ss_pred CCCccEEEecCc--cc----CCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 162 GRPLDVLVCNAA--VY----LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 162 ~g~id~lv~nAg--~~----~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
++++|+|||||| +. ....++.+.+.++|++++++|+.+++++++.++|.|.+++ .|+||++||.++..
T Consensus 81 ~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---- 154 (260)
T 2qq5_A 81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG--QGLIVVISSPGSLQ---- 154 (260)
T ss_dssp TTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT--CCEEEEECCGGGTS----
T ss_pred CCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC--CcEEEEEcChhhcC----
Confidence 899999999995 32 1234666888999999999999999999999999998765 47999999988763
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+ .+...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++...
T Consensus 155 -------------------------------~-~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 201 (260)
T 2qq5_A 155 -------------------------------Y-MFNVPYGVGKAACDKLAADCAHEL-RRHGVSCVSLWPGIVQTELLKE 201 (260)
T ss_dssp -------------------------------C-CSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCCSCTTTC--
T ss_pred -------------------------------C-CCCCchHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCccccHHHHH
Confidence 1 234689999999999999999999 5679999999999999986432
Q ss_pred ccchhhhhhchhhH--HHHhcCCCChHHHHHHHHHhhcCCCC-CCCceEEccCC
Q 015844 316 EHIPLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSL-TKSGVYWSWNK 366 (399)
Q Consensus 316 ~~~~~~~~~~~~~~--~~~~~~~~~pee~a~~v~~l~~~~~~-~~~G~~~~~dg 366 (399)
.............. ..+.++..+|||+|+.++||+++++. ++||++|..|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~~~~ 255 (260)
T 2qq5_A 202 HMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGKVLPSCD 255 (260)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEEHHH
T ss_pred hhccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhcCcccccccceeechhh
Confidence 11110000000011 12334457999999999999999874 79999998765
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-41 Score=306.65 Aligned_cols=241 Identities=20% Similarity=0.250 Sum_probs=200.9
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
|++|++|||||++|||+++|+.|+++|+ +|++++|+.+ +...+++...+.++.++.+|++|+++++++++++.+.++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999995 9999999865 344455554566788999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 79 ~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------------ 143 (255)
T 2q2v_A 79 GVDILVNNAGIQ-HVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN--WGRIINIASVHGLV------------ 143 (255)
T ss_dssp SCSEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS------------
T ss_pred CCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcCchhcc------------
Confidence 999999999986 345666789999999999999999999999999998765 48999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-hhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFR 322 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~ 322 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++... ... ...
T Consensus 144 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~ 198 (255)
T 2q2v_A 144 -----------------------GSTGKAAYVAAKHGVVGLTKVVGLET-ATSNVTCNAICPGWVLTPLVQK-QIDDRAA 198 (255)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEESSBCCHHHHH-HHHHHHH
T ss_pred -----------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcCcchhh-hcccccc
Confidence 33567899999999999999999999 6679999999999999985422 110 000
Q ss_pred h---h----chh-hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 L---L----FPP-FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~---~----~~~-~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. . ... ....+.+++.+|+|+|+.++|+++++..+++|+.|.+||.
T Consensus 199 ~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 251 (255)
T 2q2v_A 199 NGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGG 251 (255)
T ss_dssp HTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCC
Confidence 0 0 011 1223567789999999999999998888899999999984
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=312.56 Aligned_cols=236 Identities=18% Similarity=0.141 Sum_probs=197.0
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..+ ....+.+|++|.++++++++++.+
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~-----------~~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIA-----------ADLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSC-----------CSEECCCCTTSHHHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH-----------hhhccCcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999996 9999999864321 124458999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 91 ~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 158 (266)
T 3uxy_A 91 GLGRLDIVVNNAGVIS-RGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG--GGAIVNVASCWGLR--------- 158 (266)
T ss_dssp HHSCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTB---------
T ss_pred hcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhCC---------
Confidence 9999999999999974 45677889999999999999999999999999998865 58999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~- 319 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 159 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 211 (266)
T 3uxy_A 159 --------------------------PGPGHALYCLTKAALASLTQCMGMDH-APQGIRINAVCPNEVNTPMLRTGFAKR 211 (266)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCCHHHHHHHHHT
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCCCcchHhhhhhhcc
Confidence 44678899999999999999999999 56699999999999999854321110
Q ss_pred ---hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 ---LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ---~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.++||+++.+.+++|+.|.+||.
T Consensus 212 ~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 3uxy_A 212 GFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGG 262 (266)
T ss_dssp TCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 001112223345667889999999999999999989999999999985
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=318.85 Aligned_cols=244 Identities=17% Similarity=0.135 Sum_probs=205.1
Q ss_pred CccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC----------hHHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 80 ~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
.+..+++|++|||||++|||+++|+.|+++|+ +|++++|+ .+..++..+++...+.++.++.||++|++
T Consensus 21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 99 (322)
T 3qlj_A 21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWD 99 (322)
T ss_dssp -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHH
T ss_pred hhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHH
Confidence 34568999999999999999999999999996 99999987 66777777777777788999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC----CCceEEEEe
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVG 225 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~----~~g~iV~vS 225 (399)
+++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|++++++++.|+|.+... .+|+||++|
T Consensus 100 ~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~is 178 (322)
T 3qlj_A 100 QAAGLIQTAVETFGGLDVLVNNAGIVR-DRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTS 178 (322)
T ss_dssp HHHHHHHHHHHHHSCCCEEECCCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEc
Confidence 999999999999999999999999974 456778899999999999999999999999999875321 137999999
Q ss_pred ccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeC
Q 015844 226 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 305 (399)
Q Consensus 226 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~P 305 (399)
|.++.. +.++...|++||+|++.|++.++.|+ ++.||+||+|+|
T Consensus 179 S~~~~~-----------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~P 222 (322)
T 3qlj_A 179 SGAGLQ-----------------------------------GSVGQGNYSAAKAGIATLTLVGAAEM-GRYGVTVNAIAP 222 (322)
T ss_dssp CHHHHH-----------------------------------CBTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEE
T ss_pred CHHHcc-----------------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEEecC
Confidence 998875 34577899999999999999999999 667999999999
Q ss_pred CcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 306 GCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 306 G~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
| +.|++.......... ......+..+|+|+|+.++||+++.+.+++|++|.+||..
T Consensus 223 G-~~t~~~~~~~~~~~~------~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 278 (322)
T 3qlj_A 223 S-ARTRMTETVFAEMMA------TQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGK 278 (322)
T ss_dssp C-TTSCCSCCSCCC--------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTE
T ss_pred C-CCCccchhhhhhhhh------ccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 9 899865432211110 1111224579999999999999999889999999999954
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=307.67 Aligned_cols=246 Identities=16% Similarity=0.126 Sum_probs=200.9
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++|++|||||++|||+++|++|+++|+ +|+++ .|+.+..+...+++...+.++.++.+|++|.++++++++++.+.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999996 77665 788888888887777777889999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC-CCCceEEEEeccccccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~-~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||||+.....++.+.+.++|++++++|+.|++++++.++|.|.+.. ...|+||++||.++..+.
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 174 (272)
T 4e3z_A 103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS-------- 174 (272)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC--------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC--------
Confidence 99999999999975556777889999999999999999999999999998731 125899999999887521
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.++...|++||+|++.|++.++.|+ ++.||+|++|+||+|+|++......+
T Consensus 175 --------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~-- 225 (272)
T 4e3z_A 175 --------------------------ATQYVDYAASKAAIDTFTIGLAREV-AAEGIRVNAVRPGIIETDLHASGGLP-- 225 (272)
T ss_dssp --------------------------TTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC------------
T ss_pred --------------------------CCCcchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCCcCCcccccCCh--
Confidence 2356789999999999999999999 56799999999999999854332111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++|++++...+++|++|.+||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 226 DRAREMAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp --------CCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhhcCCcCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 1222233345567788999999999999999888999999999984
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=308.01 Aligned_cols=238 Identities=18% Similarity=0.190 Sum_probs=189.0
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||+++|++|+++|+ +|++++|+.++. .+++ +.++.++.+|++|+++++++++.+.+
T Consensus 4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~---~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (257)
T 3tl3_A 4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGEDV---VADL---GDRARFAAADVTDEAAVASALDLAET 76 (257)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHHH---HHHT---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cceecCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHHH---HHhc---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999996 999999865432 2222 46789999999999999999998877
Q ss_pred cCCCccEEEecCcccCCC---CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC------CCCceEEEEecccccc
Q 015844 161 SGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD------YPSKRLIIVGSITGNT 231 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~------~~~g~iV~vSS~~~~~ 231 (399)
++++|+||||||+.... .+..+.+.++|++++++|+.|+++++++++|.|.+.. ...|+||++||.++..
T Consensus 77 -~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tl3_A 77 -MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD 155 (257)
T ss_dssp -HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C
T ss_pred -hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC
Confidence 89999999999985321 1122478999999999999999999999999998731 1258999999998874
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
+.++...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|+
T Consensus 156 -----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~ 199 (257)
T 3tl3_A 156 -----------------------------------GQIGQAAYSASKGGVVGMTLPIARDL-ASHRIRVMTIAPGLFDTP 199 (257)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCT
T ss_pred -----------------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEecCccCh
Confidence 44678899999999999999999999 567999999999999998
Q ss_pred CCccccchhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 312 GLFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+... ..+. .........+. +++.+|+|+|+.++||+++ .+++|+.|.+||.
T Consensus 200 ~~~~-~~~~--~~~~~~~~~~~~~r~~~p~dva~~v~~l~s~--~~itG~~i~vdGG 251 (257)
T 3tl3_A 200 LLAS-LPEE--ARASLGKQVPHPSRLGNPDEYGALAVHIIEN--PMLNGEVIRLDGA 251 (257)
T ss_dssp TC----CHH--HHHHHHHTSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTT
T ss_pred hhhh-ccHH--HHHHHHhcCCCCCCccCHHHHHHHHHHHhcC--CCCCCCEEEECCC
Confidence 6533 2221 11122233444 7889999999999999987 5799999999995
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=304.00 Aligned_cols=240 Identities=19% Similarity=0.185 Sum_probs=199.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+. ++..+++. + .++.+|++|+++++++++++.+.
T Consensus 2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-~~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEG-KEVAEAIG----G-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTH-HHHHHHHT----C-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhH-HHHHHHhh----C-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 99999999876 66655553 3 78899999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 75 ~g~iD~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~---------- 141 (256)
T 2d1y_A 75 LGRVDVLVNNAAIA-APGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGLF---------- 141 (256)
T ss_dssp HSCCCEEEECCCCC-CCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccccccC----------
Confidence 99999999999986 345677889999999999999999999999999998765 48999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc---c
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---I 318 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~---~ 318 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++..... .
T Consensus 142 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 195 (256)
T 2d1y_A 142 -------------------------AEQENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSP 195 (256)
T ss_dssp -------------------------BCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC---
T ss_pred -------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCccCchhhhcccccc
Confidence 33567899999999999999999999 567999999999999998532110 0
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|+|+|+.++|+++++..+++|+.+.+||.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG 244 (256)
T 2d1y_A 196 DPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG 244 (256)
T ss_dssp -----CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence 0000011111223557789999999999999999888899999999985
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=305.56 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=204.1
Q ss_pred ccccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHH-HHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAG-MAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~-~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
.+++++|++|||||+ +|||+++|++|+++|+ +|++++|+.... ++..+++. ..+.++.++.||++|+++++++++
T Consensus 15 ~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (267)
T 3gdg_A 15 QLSLKGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVK 93 (267)
T ss_dssp HHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHH
T ss_pred ccCcCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHH
Confidence 357899999999999 9999999999999996 898888875433 44444443 236789999999999999999999
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
++.+.++++|+||||||+.. ...+.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..+.
T Consensus 94 ~~~~~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~~--- 167 (267)
T 3gdg_A 94 DVVADFGQIDAFIANAGATA-DSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG--TGSLVITASMSGHIAN--- 167 (267)
T ss_dssp HHHHHTSCCSEEEECCCCCC-CSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSCC---
T ss_pred HHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC--CceEEEEccccccccC---
Confidence 99999999999999999874 45677889999999999999999999999999998865 4799999999887421
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
..++...|++||++++.|++.++.|+ .+. |+||+|+||+|+|++...
T Consensus 168 ------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~v~~v~PG~v~t~~~~~- 214 (267)
T 3gdg_A 168 ------------------------------FPQEQTSYNVAKAGCIHMARSLANEW-RDF-ARVNSISPGYIDTGLSDF- 214 (267)
T ss_dssp ------------------------------SSSCCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEEECCEECSCGGG-
T ss_pred ------------------------------CCCCCCcchHHHHHHHHHHHHHHHHh-ccC-cEEEEEECCccccchhhh-
Confidence 11366789999999999999999999 554 999999999999985432
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..+. .........+.+++.+|+|+|+.++||+++...+++|+.|.+||.
T Consensus 215 ~~~~--~~~~~~~~~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG 263 (267)
T 3gdg_A 215 VPKE--TQQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGG 263 (267)
T ss_dssp SCHH--HHHHHHTTSTTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred CCHH--HHHHHHhcCCCCCCcCHHHHHhHhheeecCccccccCCEEEECCc
Confidence 2221 111223345677889999999999999999989999999999985
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=306.78 Aligned_cols=240 Identities=19% Similarity=0.199 Sum_probs=201.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..+++.+++. ++.++.||++|+++++++++++.+.+
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 80 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc----CCeEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999887777666553 37889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|+++ .|+||++||..+..
T Consensus 81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~----------- 146 (270)
T 1yde_A 81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSLVGAI----------- 146 (270)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCHHHHH-----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC---CCEEEEEcCccccC-----------
Confidence 9999999999986544567788999999999999999999999999999765 37999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc---ch
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IP 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~---~~ 319 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++..... ..
T Consensus 147 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~ 201 (270)
T 1yde_A 147 ------------------------GQAQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPD 201 (270)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSS
T ss_pred ------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCccccchhhhhhhcccc
Confidence 23566789999999999999999999 567999999999999998532100 00
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....+.......+.+++.+|+|+|+.++||+++ ..+++|+.+.+||.
T Consensus 202 ~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~-~~~itG~~i~vdGG 248 (270)
T 1yde_A 202 PRASIREGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIELLVTGG 248 (270)
T ss_dssp HHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH-CTTCCSCEEEESTT
T ss_pred hHHHHHHHhhcCCCCCCcCHHHHHHHHHHHccc-CCCcCCCEEEECCC
Confidence 001111112334667889999999999999997 67899999999985
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=304.44 Aligned_cols=241 Identities=17% Similarity=0.144 Sum_probs=202.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.+|++|+++++++++++.+.+
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 9999999988877776666 4578899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++++ |+||++||..+..
T Consensus 79 g~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 143 (253)
T 1hxh_A 79 GTLNVLVNNAGIL-LPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG---GSIINMASVSSWL----------- 143 (253)
T ss_dssp CSCCEEEECCCCC-CCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC---EEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCC-CCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC---CEEEEEcchhhcC-----------
Confidence 9999999999986 445677889999999999999999999999999998753 7999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCC--ceEEEEeeCCcccCCCCccccchh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET--GIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~--gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.|+ ++. ||+||+|+||+|+|++......+.
T Consensus 144 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 198 (253)
T 1hxh_A 144 ------------------------PIEQYAGYSASKAAVSALTRAAALSC-RKQGYAIRVNSIHPDGIYTPMMQASLPKG 198 (253)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-HHHTCCEEEEEEEESEECCHHHHHHSCTT
T ss_pred ------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCCCeEEEEEEeCCccCchhhhccchh
Confidence 34567899999999999999999998 455 899999999999998532211110
Q ss_pred -hhh-hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 -FRL-LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 -~~~-~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... +.......+.+++.+|+|+|+.++||++++..+++|+++.+||.
T Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 247 (253)
T 1hxh_A 199 VSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp CCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred hhHHHHhhhhccCccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 000 10000023456788999999999999999888999999999985
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=303.79 Aligned_cols=244 Identities=15% Similarity=0.142 Sum_probs=198.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+.+|++|||||++|||+++|++|+++|+ +|++++|+. ...+...+.+...+.++.++.||++|+++++++++++.+.
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999999996 888886654 4455555555555678999999999999999999999999
Q ss_pred CCCccEEEecCccc-CCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc-cCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN-TNTLAGNVP 239 (399)
Q Consensus 162 ~g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~-~~~~~~~~~ 239 (399)
++++|+||||||+. ....++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.... .
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~~-------- 152 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN--FGRIINYGFQGADSA-------- 152 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTTGGGC--------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CCeEEEEeechhccc--------
Confidence 99999999999942 2345666789999999999999999999999999998875 4899999987432 1
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
.++++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++... ..+
T Consensus 153 --------------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~ 204 (264)
T 3i4f_A 153 --------------------------PGWIYRSAFAAAKVGLVSLTKTVAYEE-AEYGITANMVCPGDIIGEMKEA-TIQ 204 (264)
T ss_dssp --------------------------CCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCGGGGSC-CHH
T ss_pred --------------------------CCCCCCchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEccCCccCccchh-ccH
Confidence 134567899999999999999999999 5679999999999999985433 222
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. .........+.+++.+|+|+|+.++||+++...+++|+.|.+||.
T Consensus 205 ~--~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG 250 (264)
T 3i4f_A 205 E--ARQLKEHNTPIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGA 250 (264)
T ss_dssp H--HHHC--------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCS
T ss_pred H--HHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCc
Confidence 1 111223455678899999999999999999888999999999995
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=304.25 Aligned_cols=235 Identities=19% Similarity=0.204 Sum_probs=195.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++. . ..++.++.+|++|.++++++++++.+.+
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~----~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKAL----N--LPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTT----C--CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHh----h--cCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999999996 999999997665432 1 2368899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 86 g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~IV~isS~~~~~----------- 151 (266)
T 3p19_A 86 GPADAIVNNAGMML-LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGKK----------- 151 (266)
T ss_dssp CSEEEEEECCCCCC-CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhCC-----------
Confidence 99999999999974 46777889999999999999999999999999998765 48999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++..........
T Consensus 152 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~ 206 (266)
T 3p19_A 152 ------------------------TFPDHAAYCGTKFAVHAISENVREEV-AASNVRVMTIAPSAVKTELLSHTTSQQIK 206 (266)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGCSCHHHH
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCccccchhhcccchhhh
Confidence 44677899999999999999999999 56799999999999999865432211111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
. .......+.+++.+|+|+|+.++|+++.+.....+..+..
T Consensus 207 ~-~~~~~~~~~~r~~~pedvA~av~~l~~~~~~~~~~~i~i~ 247 (266)
T 3p19_A 207 D-GYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIREIALA 247 (266)
T ss_dssp H-HHHHHHHHTTCCBCHHHHHHHHHHHHHSCTTEEEEEEEEE
T ss_pred H-HHHhhcccccCCCCHHHHHHHHHHHHcCCCCccceeeEEe
Confidence 1 0111134678899999999999999999887766666543
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=304.01 Aligned_cols=233 Identities=21% Similarity=0.278 Sum_probs=189.9
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||+++|++|+++|+ +|++++|+.++++ .+.++.+|++|+++++++++++.+
T Consensus 16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~-----------~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (253)
T 2nm0_A 16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPE-----------GFLAVKCDITDTEQVEQAYKEIEE 83 (253)
T ss_dssp ----CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCT-----------TSEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhc-----------cceEEEecCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999995 9999999864321 267899999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 84 ~~g~iD~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 151 (253)
T 2nm0_A 84 THGPVEVLIANAGVT-KDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK--KGRVVLISSVVGLL--------- 151 (253)
T ss_dssp HTCSCSEEEEECSCC-TTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCCCCCC---------
T ss_pred HcCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECchhhCC---------
Confidence 999999999999986 445667889999999999999999999999999998764 48999999988764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++... ..+.
T Consensus 152 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~-~~~~ 203 (253)
T 2nm0_A 152 --------------------------GSAGQANYAASKAGLVGFARSLAREL-GSRNITFNVVAPGFVDTDMTKV-LTDE 203 (253)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSEEEEEEEECSBCC----------
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhh-cCHH
Confidence 33578899999999999999999999 6679999999999999985432 1110
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++|+++++..+++|+++.+||.
T Consensus 204 --~~~~~~~~~p~~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG 248 (253)
T 2nm0_A 204 --QRANIVSQVPLGRYARPEEIAATVRFLASDDASYITGAVIPVDGG 248 (253)
T ss_dssp --CHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCc
Confidence 011111233557789999999999999999888999999999985
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=306.69 Aligned_cols=241 Identities=16% Similarity=0.089 Sum_probs=197.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccC-CCcEEEEEecCCCH----HHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYTIMHLDLASL----DSVRQFVD 156 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~----~~v~~~~~ 156 (399)
.|++|++|||||++|||+++|++|+++|+ +|++++| +.+.++++.+++... +.++.++.+|++|. ++++++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence 46889999999999999999999999995 9999999 888877777776543 56789999999999 99999999
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCCh-----------hhhhHhhhchhhHHHHHHHHHHHHHhhCCC----CCceE
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTA-----------EGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRL 221 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~-----------~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~----~~g~i 221 (399)
++.+.++++|+||||||+.. ..++.+.+. ++|++++++|+.|+++++++++|.|. ++. .+|+|
T Consensus 87 ~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~~~~g~i 164 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYY-PTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCC-CCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCCEEE
T ss_pred HHHHhcCCCCEEEECCCCCC-CCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCCCCcEE
Confidence 99999999999999999864 356667787 99999999999999999999999987 321 11799
Q ss_pred EEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEE
Q 015844 222 IIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFA 301 (399)
Q Consensus 222 V~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~ 301 (399)
|++||..+.. +.++...|++||++++.|++.++.|+ .+.||+||
T Consensus 165 v~isS~~~~~-----------------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~ 208 (276)
T 1mxh_A 165 VNLCDAMTDL-----------------------------------PLPGFCVYTMAKHALGGLTRAAALEL-APRHIRVN 208 (276)
T ss_dssp EEECCGGGGS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEE
T ss_pred EEECchhhcC-----------------------------------CCCCCeehHHHHHHHHHHHHHHHHHH-hhcCeEEE
Confidence 9999998874 34677899999999999999999999 56799999
Q ss_pred EeeCCcccCCCCccccchhhhhhchhhHHHHhcC-CCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 302 SLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG-YVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 302 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+|+||+|+|+ . ...+. .........+.++ +.+|+|+|+.++||+++...+++|+++.+||.
T Consensus 209 ~v~PG~v~t~-~--~~~~~--~~~~~~~~~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 270 (276)
T 1mxh_A 209 AVAPGLSLLP-P--AMPQE--TQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 270 (276)
T ss_dssp EEEESSBSCC-S--SSCHH--HHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEecCcccCC-c--cCCHH--HHHHHHhcCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence 9999999998 2 11111 1111122345567 88999999999999998888899999999985
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=299.96 Aligned_cols=235 Identities=18% Similarity=0.156 Sum_probs=186.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|++++|++|||||++|||+++++.|+++|+ +|++++|+.+. ...+ +.++.+|++|+++++++++++.+.
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~--------~~~~--~~~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ--------EQYP--FATEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS--------SCCS--SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh--------hcCC--ceEEEcCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 99999998641 1112 778899999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 72 ~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~---------- 138 (250)
T 2fwm_X 72 TERLDALVNAAGILR-MGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR--GGAIVTVASDAAHT---------- 138 (250)
T ss_dssp CSCCCEEEECCCCCC-CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC--CCEEEEECchhhCC----------
Confidence 999999999999863 45677889999999999999999999999999998765 47999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++........
T Consensus 139 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~- 191 (250)
T 2fwm_X 139 -------------------------PRIGMSAYGASKAALKSLALSVGLEL-AGSGVRCNVVSPGSTDTDMQRTLWVSD- 191 (250)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC-------------
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-CccCCEEEEEECCcccCccccccccCh-
Confidence 34567899999999999999999999 567999999999999998643211110
Q ss_pred hhhc-hhhH-------HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLF-PPFQ-------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~-~~~~-------~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.... .... ..+.+++.+|+|+|+.++||++++..+++|+.|.+||.
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (250)
T 2fwm_X 192 DAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDGG 245 (250)
T ss_dssp ------------------------CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hHHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 0001 1111 34567789999999999999999888999999999985
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=304.69 Aligned_cols=242 Identities=19% Similarity=0.182 Sum_probs=204.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|++|||||++|||+++|++|+++|+ +|++ .+|+.+..++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 36799999999999999999999999996 7766 577888888888887777788999999999999999999998776
Q ss_pred C------CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCC
Q 015844 162 G------RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 162 ~------g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~ 235 (399)
+ +++|+||||||+. ....+.+.+.++|++++++|+.|++++++.++|.|++ .|+||++||.++..
T Consensus 83 ~~~~~~~~~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~~~iv~isS~~~~~---- 153 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIG-PGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD----NSRIINISSAATRI---- 153 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEECCGGGTS----
T ss_pred hcccccCCcccEEEECCCCC-CCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC----CCEEEEeCChhhcc----
Confidence 5 3599999999986 4556778899999999999999999999999999854 36999999998874
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|++||+|++.|++.++.|+ .++||+||+|+||+|+|++...
T Consensus 154 -------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~ 201 (255)
T 3icc_A 154 -------------------------------SLPDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFVKTDMNAE 201 (255)
T ss_dssp -------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCSSSTT
T ss_pred -------------------------------CCCCcchhHHhHHHHHHHHHHHHHHH-HhcCeEEEEEEEeeecccchhh
Confidence 44678899999999999999999999 5669999999999999985533
Q ss_pred ccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...............+.+++.+|+|+|+.++||+++...+++|++|.+||.
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (255)
T 3icc_A 202 -LLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 252 (255)
T ss_dssp -TTTSHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred -hcccHHHHHhhhccCCcCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCC
Confidence 222111111222234567889999999999999999888999999999985
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=302.17 Aligned_cols=243 Identities=17% Similarity=0.142 Sum_probs=200.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHH---cCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAE---TGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~---~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
++++|++|||||++|||+++|+.|++ +|+ +|++++|+.+.+++..+++... +.++.++.+|++|++++++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 57889999999999999999999999 895 9999999998888777776543 56789999999999999999999
Q ss_pred HHH--cCCCcc--EEEecCcccCCC-CCCCC-CChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccccc
Q 015844 158 FRR--SGRPLD--VLVCNAAVYLPT-AKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (399)
Q Consensus 158 ~~~--~~g~id--~lv~nAg~~~~~-~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~ 231 (399)
+.+ .++++| +||||||+.... .++.+ .+.++|++++++|+.|+++++++++|.|+++..+.|+||++||.++..
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 988 678899 999999986331 34555 688999999999999999999999999987511148999999998874
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
+.++...|++||++++.|++.++.|+ . +|+||+|+||+|+|+
T Consensus 162 -----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~--~i~vn~v~PG~v~T~ 203 (259)
T 1oaa_A 162 -----------------------------------PYKGWGLYCAGKAARDMLYQVLAAEE-P--SVRVLSYAPGPLDND 203 (259)
T ss_dssp -----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHC-T--TEEEEEEECCSBSSH
T ss_pred -----------------------------------CCCCccHHHHHHHHHHHHHHHHHhhC-C--CceEEEecCCCcCcc
Confidence 34677899999999999999999998 3 499999999999998
Q ss_pred CCccccch---hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 312 GLFREHIP---LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 312 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
+... ... ............+.+++.+|+|+|+.++|++++ ..+++|+++.+||
T Consensus 204 ~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~-~~~itG~~i~vdg 259 (259)
T 1oaa_A 204 MQQL-ARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQK-DTFQSGAHVDFYD 259 (259)
T ss_dssp HHHH-HHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHH-CCSCTTEEEETTC
T ss_pred hHHH-HhhccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHHHhh-ccccCCcEEeccC
Confidence 5322 110 001111122344567899999999999999986 5679999999885
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=313.49 Aligned_cols=234 Identities=20% Similarity=0.198 Sum_probs=200.2
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-------HHHHHHHhccCCCcEEEEEecCCCHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 153 (399)
..+++||++|||||++|||+++|++|+++|+ +|++++|+.++ +++..+++...+.++.++.||++|++++++
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 118 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISA 118 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 3578999999999999999999999999996 99999998653 555666666667889999999999999999
Q ss_pred HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
+++++.+.+++||+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||..+..+.
T Consensus 119 ~~~~~~~~~g~iDilVnnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~~~~~~~ 195 (346)
T 3kvo_A 119 AVEKAIKKFGGIDILVNNASAI-SLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK--VAHILNISPPLNLNPV 195 (346)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS--SCEEEEECCCCCCCGG
T ss_pred HHHHHHHHcCCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CCEEEEECCHHHcCCC
Confidence 9999999999999999999997 446777889999999999999999999999999998875 5899999998876411
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCc-ccCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC-IATTG 312 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~-v~T~~ 312 (399)
+.++...|++||++++.|++.++.|+ . .||+||+|+||+ |+|++
T Consensus 196 ---------------------------------~~~~~~~Y~aSKaal~~l~~~la~e~-~-~gIrvn~v~PG~~i~T~~ 240 (346)
T 3kvo_A 196 ---------------------------------WFKQHCAYTIAKYGMSMYVLGMAEEF-K-GEIAVNALWPKTAIHTAA 240 (346)
T ss_dssp ---------------------------------GTSSSHHHHHHHHHHHHHHHHHHHHT-T-TTCEEEEEECSBCBCCHH
T ss_pred ---------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEEeCCCccccHH
Confidence 14567899999999999999999999 4 799999999995 88863
Q ss_pred CccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
... . ....+.+++.+|+|+|+.++||+++ ..+++|+++ +||
T Consensus 241 ~~~-~----------~~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i-vdg 281 (346)
T 3kvo_A 241 MDM-L----------GGPGIESQCRKVDIIADAAYSIFQK-PKSFTGNFV-IDE 281 (346)
T ss_dssp HHH-H----------CC--CGGGCBCTHHHHHHHHHHHTS-CTTCCSCEE-EHH
T ss_pred HHh-h----------ccccccccCCCHHHHHHHHHHHHhc-CCCCCceEE-ECC
Confidence 311 0 0112356788999999999999999 788999999 665
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=299.06 Aligned_cols=235 Identities=19% Similarity=0.234 Sum_probs=202.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++. .++.++.+|++|+++++++++++.+++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 79 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh---cCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 99999999888777766653 247889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||.++..
T Consensus 80 g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 145 (260)
T 1nff_A 80 GGLHVLVNNAGILN-IGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGLA----------- 145 (260)
T ss_dssp SCCCEEEECCCCCC-CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEeehhhcC-----------
Confidence 99999999999863 45677889999999999999999999999999998764 48999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.. ..+ .
T Consensus 146 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~--~~~--~ 196 (260)
T 1nff_A 146 ------------------------GTVACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTD--WVP--E 196 (260)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGT--TSC--T
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCCCCccc--cch--h
Confidence 33567899999999999999999999 567999999999999998532 111 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.+ . ..+.+++.+|+|+|+.++|+++++..+++|+.+.+||..
T Consensus 197 ~~---~-~~~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~ 238 (260)
T 1nff_A 197 DI---F-QTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 238 (260)
T ss_dssp TC---S-CCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hH---H-hCccCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCCe
Confidence 11 1 234567889999999999999988888999999999864
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=310.51 Aligned_cols=260 Identities=16% Similarity=0.185 Sum_probs=211.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe---------ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA---------CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVR 152 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~---------~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~ 152 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++. +|+.++.+...+++...+.. ..+|+++.++++
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~---~~~D~~~~~~~~ 80 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK---AVANYDSVEAGE 80 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE---EEEECCCGGGHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe---EEEeCCCHHHHH
Confidence 468899999999999999999999999996 88885 45677777777777554443 358999999999
Q ss_pred HHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccC
Q 015844 153 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (399)
Q Consensus 153 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~ 232 (399)
++++++.+.++++|+||||||+.. ..++.+.+.++|+.+|++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 81 ~~~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~grIV~vsS~~~~~- 156 (319)
T 1gz6_A 81 KLVKTALDTFGRIDVVVNNAGILR-DRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGIY- 156 (319)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhcc-
Confidence 999999999999999999999874 34566789999999999999999999999999998765 48999999988764
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
+.++...|++||++++.|++.++.++ .+.||+||+|+||++ |++
T Consensus 157 ----------------------------------~~~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~vn~v~PG~~-t~~ 200 (319)
T 1gz6_A 157 ----------------------------------GNFGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAG-SRM 200 (319)
T ss_dssp ----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECC-STT
T ss_pred ----------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-cccCEEEEEEeCCCc-ccc
Confidence 22467899999999999999999999 567999999999998 764
Q ss_pred CccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccc---------cccCcccCCHH
Q 015844 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE---------NQLSQEASDVE 383 (399)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~---------~~~~~~~~~~~ 383 (399)
.. ...+ ... ....+|+|+|..++||++++. +++|++|.+||...... ........|++
T Consensus 201 ~~-~~~~------~~~-----~~~~~p~dvA~~~~~l~s~~~-~~tG~~~~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (319)
T 1gz6_A 201 TE-TVMP------EDL-----VEALKPEYVAPLVLWLCHESC-EENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPE 267 (319)
T ss_dssp TG-GGSC------HHH-----HHHSCGGGTHHHHHHHTSTTC-CCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHH
T ss_pred cc-ccCC------hhh-----hccCCHHHHHHHHHHHhCchh-hcCCCEEEECCCeEEEEeeeeccceeccCCCCCCCHH
Confidence 32 1111 001 124699999999999998754 68999999887422100 01235678999
Q ss_pred HHHHHHHHHHHHhcC
Q 015844 384 KARKVWEISEKLVGL 398 (399)
Q Consensus 384 ~~~~lw~~~~~~~~~ 398 (399)
.++++|+.++++++.
T Consensus 268 ~~~~lw~~~~~~~~~ 282 (319)
T 1gz6_A 268 AVRDNWVKICDFSNA 282 (319)
T ss_dssp HHHHTHHHHTCCTTC
T ss_pred HHHHHHHHhhccccc
Confidence 999999999998764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=303.14 Aligned_cols=232 Identities=16% Similarity=0.145 Sum_probs=195.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.. ...++.++.+|++|+++++++++++.+
T Consensus 23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~---------~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 92 (260)
T 3un1_A 23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPS---------ADPDIHTVAGDISKPETADRIVREGIE 92 (260)
T ss_dssp HHHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCC---------SSTTEEEEESCTTSHHHHHHHHHHHHH
T ss_pred hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhc---------ccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999995 999999985432 123688999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+....
T Consensus 93 ~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~~------- 162 (260)
T 3un1_A 93 RFGRIDSLVNNAGVFL-AKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG--SGHIVSITTSLVDQPM------- 162 (260)
T ss_dssp HHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCTTTTSCB-------
T ss_pred HCCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhccCC-------
Confidence 9999999999999974 45677889999999999999999999999999998875 5899999998765210
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+..+...|++||+|++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 163 --------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~-- 213 (260)
T 3un1_A 163 --------------------------VGMPSALASLTKGGLNAVTRSLAMEF-SRSGVRVNAVSPGVIKTPMHPAETH-- 213 (260)
T ss_dssp --------------------------TTCCCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECCBCCTTSCGGGH--
T ss_pred --------------------------CCCccHHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEEeecCCCCCCCCHHHH--
Confidence 22355789999999999999999999 6779999999999999986532111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......+.+++.+|+|+|++++|| +.+.+++|+.+.+||.
T Consensus 214 ----~~~~~~~p~~r~~~~~dva~av~~L--~~~~~itG~~i~vdGG 254 (260)
T 3un1_A 214 ----STLAGLHPVGRMGEIRDVVDAVLYL--EHAGFITGEILHVDGG 254 (260)
T ss_dssp ----HHHHTTSTTSSCBCHHHHHHHHHHH--HHCTTCCSCEEEESTT
T ss_pred ----HHHhccCCCCCCcCHHHHHHHHHHh--cccCCCCCcEEEECCC
Confidence 1122234667889999999999999 4455799999999985
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=297.42 Aligned_cols=237 Identities=23% Similarity=0.287 Sum_probs=188.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
...+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++. .++.++.+|+++.+++++++++
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~--- 81 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK---DNYTIEVCNLANKEECSNLISK--- 81 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---SSEEEEECCTTSHHHHHHHHHT---
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc---cCccEEEcCCCCHHHHHHHHHh---
Confidence 4478899999999999999999999999995 99999999988888777764 4688999999999998887764
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+++|+||||||+.. ...+.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..
T Consensus 82 -~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 148 (249)
T 3f9i_A 82 -TSNLDILVCNAGITS-DTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR--YGRIINISSIVGIA--------- 148 (249)
T ss_dssp -CSCCSEEEECCC--------------CHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCC-----------
T ss_pred -cCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEEccHHhcc---------
Confidence 478999999999874 35566788999999999999999999999999998765 48999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|++.|++.++.++ .+.||+||+|+||+|+|++... ..+
T Consensus 149 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~- 199 (249)
T 3f9i_A 149 --------------------------GNPGQANYCASKAGLIGMTKSLSYEV-ATRGITVNAVAPGFIKSDMTDK-LNE- 199 (249)
T ss_dssp --------------------------CCSCSHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBC-------CCH-
T ss_pred --------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCccccCcccc-cCH-
Confidence 34677899999999999999999999 5679999999999999985433 222
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++...+++|+++.+||.
T Consensus 200 -~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG 245 (249)
T 3f9i_A 200 -KQREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGG 245 (249)
T ss_dssp -HHHHHHHHHCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 1222334455678889999999999999999888999999999985
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=303.19 Aligned_cols=242 Identities=12% Similarity=0.101 Sum_probs=197.6
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++|++|||||+ +|||+++|+.|+++|+ +|++++|+.+ .++..+++......+.++.+|++|+++++++++++.+
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE 82 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 5789999999999 9999999999999995 9999999874 2223333322112378899999999999999999999
Q ss_pred cCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
.++++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|++ +|+||++||..+..
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~------ 152 (261)
T 2wyu_A 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE----GGGIVTLTYYASEK------ 152 (261)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEEECGGGTS------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc----CCEEEEEecccccC------
Confidence 99999999999998632 245667899999999999999999999999999864 37999999988764
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||++++.|++.++.++ ++.||+||+|+||+|+|++... .
T Consensus 153 -----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~ 201 (261)
T 2wyu_A 153 -----------------------------VVPKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARS-I 201 (261)
T ss_dssp -----------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCCTGGGG-C
T ss_pred -----------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCCCcCchhhh-c
Confidence 33567789999999999999999999 5679999999999999985422 1
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..............+.+++.+|+|+|+.++|++++...+++|+.+.+||.
T Consensus 202 ~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 251 (261)
T 2wyu_A 202 PGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAG 251 (261)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 11111111223345667889999999999999998888899999999985
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=300.00 Aligned_cols=244 Identities=19% Similarity=0.181 Sum_probs=202.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++. .++.++.+|++|+++++++++++.++
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLE---NGGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCT---TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh---cCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 99999999887777666553 26788999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||..+..
T Consensus 84 ~g~iD~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 151 (263)
T 3ak4_A 84 LGGFDLLCANAGVS-TMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNT-KGVIVNTASLAAKV---------- 151 (263)
T ss_dssp HTCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCcC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEeccccccc----------
Confidence 99999999999986 3456667899999999999999999999999999987541 37999999988764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--- 318 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 152 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 205 (263)
T 3ak4_A 152 -------------------------GAPLLAHYSASKFAVFGWTQALAREM-APKNIRVNCVCPGFVKTAMQEREIIWEA 205 (263)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBTTHHHHHHHHHHH
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hHcCeEEEEEecccccChhhhhhccccc
Confidence 33567799999999999999999999 5679999999999999985322100
Q ss_pred -hh----hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -PL----FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -~~----~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ...........+.+++.+|+|+|+.++|+++++..+++|+.+.+||.
T Consensus 206 ~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 259 (263)
T 3ak4_A 206 ELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGG 259 (263)
T ss_dssp HHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcC
Confidence 00 01111112234567789999999999999998888899999999985
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=306.54 Aligned_cols=276 Identities=14% Similarity=0.165 Sum_probs=215.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++|++|||||+||||+++|++|+++|+ +|++++|+.+..++..+++... +.++.++.+|++|.++++++++++.+
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 9999999988877777766543 56799999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ...++.+.+.++|++++++|+.|++++++.+++.|.+.. +.++||++||..+..
T Consensus 101 ~~g~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~~iv~isS~~~~~--------- 169 (302)
T 1w6u_A 101 VAGHPNIVINNAAGN-FISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ-KGAAFLSITTIYAET--------- 169 (302)
T ss_dssp HTCSCSEEEECCCCC-CCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEECCTHHHH---------
T ss_pred HcCCCCEEEECCCCC-CCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCCEEEEEccccccc---------
Confidence 999999999999986 345566788999999999999999999999999997432 147999999988764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.++ .+.||++++|+||+|.|+++.....+.
T Consensus 170 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 222 (302)
T 1w6u_A 170 --------------------------GSGFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPT 222 (302)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTT
T ss_pred --------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeccCCCcchhhhcccc
Confidence 33567789999999999999999998 566999999999999998443322111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHHHHHhcC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 398 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~~ 398 (399)
...........+.+++.+|+|+|+.+++++++...+++|+++.+||.......... ....+...+.|+.++++++.
T Consensus 223 ~~~~~~~~~~~p~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~ 298 (302)
T 1w6u_A 223 GTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEF--NDLRKVTKEQWDTIEELIRK 298 (302)
T ss_dssp SHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTT--GGGGGCCHHHHHHHTTC---
T ss_pred hhhHHHHHhcCCcCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCcc--ccchhhccccccChhhhccC
Confidence 11111122234556788999999999999998877899999999985332111111 12223456789999988754
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=303.13 Aligned_cols=242 Identities=13% Similarity=0.132 Sum_probs=196.1
Q ss_pred ccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+. ..++..+++........++.+|++|+++++++++++.+
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK 83 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHH
Confidence 3789999999999 9999999999999995 999999986 33333333322212347889999999999999999999
Q ss_pred cCCCccEEEecCcccCC---CCCCCC-CChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLP---TAKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~---~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
.++++|+||||||+... ..++.+ .+.++|++++++|+.|+++++++++|.|.+ +|+||++||..+..
T Consensus 84 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~----- 154 (265)
T 1qsg_A 84 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP----GSALLTLSYLGAER----- 154 (265)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEEECGGGTS-----
T ss_pred HcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEEcchhhcc-----
Confidence 99999999999998632 134455 789999999999999999999999999874 37999999988764
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+.++...|++||++++.|++.++.++ ++.||+||+|+||+|+|++...
T Consensus 155 ------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~- 202 (265)
T 1qsg_A 155 ------------------------------AIPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASG- 202 (265)
T ss_dssp ------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGGG-
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCccchhhc-
Confidence 33566789999999999999999999 6679999999999999985422
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...............+.+++.+|+|+|+.++|++++...+++|+.+.+||.
T Consensus 203 ~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 253 (265)
T 1qsg_A 203 IKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 253 (265)
T ss_dssp STTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCC
Confidence 111111111222334567789999999999999998888899999999985
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=303.79 Aligned_cols=240 Identities=12% Similarity=0.065 Sum_probs=197.5
Q ss_pred ccCCCEEEEEcC--CChHHHHHHHHHHHcCCcEEEEeecChHH-HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~--s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+++|++||||| ++|||+++|+.|+++|+ +|++++|+.++ .+++.+++ +.++.++.+|++|+++++++++++.
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRL---PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTS---SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhc---CCCceEEEccCCCHHHHHHHHHHHH
Confidence 578999999999 99999999999999996 99999998755 34444333 4567889999999999999999999
Q ss_pred HcCC---CccEEEecCcccCC----CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccC
Q 015844 160 RSGR---PLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (399)
Q Consensus 160 ~~~g---~id~lv~nAg~~~~----~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~ 232 (399)
+.+| ++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|+|++. |+||++||..+.
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----g~iv~iss~~~~-- 153 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG----GSIVGMDFDPSR-- 153 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEEECCCSS--
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC----CeEEEEcCcccc--
Confidence 9988 99999999998642 3466678999999999999999999999999999753 699999987652
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
+.+++..|++||++++.|++.++.|+ ++.||+||+|+||+|+|++
T Consensus 154 ----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~ 198 (269)
T 2h7i_A 154 ----------------------------------AMPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLA 198 (269)
T ss_dssp ----------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHH
T ss_pred ----------------------------------ccCchHHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccchh
Confidence 23567899999999999999999999 6779999999999999985
Q ss_pred Ccccc----chhh----hhh-chhhHHHHhc-CCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 313 LFREH----IPLF----RLL-FPPFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 313 ~~~~~----~~~~----~~~-~~~~~~~~~~-~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+.... .... ... .......|.+ ++.+|+|+|+.++||+++.+.++||+.+.+||.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 263 (269)
T 2h7i_A 199 MSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGG 263 (269)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTT
T ss_pred hhccccccchhhHHHHHHHHHHhhhccCCcccCCCCHHHHHHHHHHHhCchhccCcceEEEecCC
Confidence 42110 0100 001 1122344666 689999999999999999989999999999985
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=294.66 Aligned_cols=249 Identities=20% Similarity=0.207 Sum_probs=206.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+..+...+++...+.++.++.+|++|+++++++++++.+.
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999988877777777655678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.....++.+.+.++|++++++|+.+++++++++.|.|.+++ .++||++||..+..+.
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~-------- 157 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK--QGVIVAIGSMSGLIVN-------- 157 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC--------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEecchhcccC--------
Confidence 999999999999864355677889999999999999999999999999998754 4799999998876411
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+..+...|++||++++.|++.++.++ .+.||+|++|+||+|.|++....... .
T Consensus 158 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~ 210 (260)
T 3awd_A 158 -------------------------RPQQQAAYNASKAGVHQYIRSLAAEW-APHGIRANAVAPTYIETTLTRFGMEK-P 210 (260)
T ss_dssp -------------------------SSSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTHHHHTC-H
T ss_pred -------------------------CCCCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeeeeccchhhcccCC-h
Confidence 11123789999999999999999998 56699999999999999854311110 1
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..........+.+++.+|+|+|+.++++++++..+++|+.+.+||..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 211 ELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp HHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHhcCCcCCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 11111222345567889999999999999988778999999999853
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=289.70 Aligned_cols=230 Identities=22% Similarity=0.240 Sum_probs=196.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++|++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++. ..+.++.++.||++|+++++++++++.+.++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 368999999999999999999999995 89999999988888777764 4467899999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.+. ++++|++||..+..
T Consensus 80 ~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~~~ii~~sS~~~~~------------ 143 (235)
T 3l77_A 80 DVDVVVANAGLG-YFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT---GGLALVTTSDVSAR------------ 143 (235)
T ss_dssp SCSEEEECCCCC-CCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCGGGSS------------
T ss_pred CCCEEEECCccc-cccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEEecchhcc------------
Confidence 999999999986 45677788999999999999999999999999999654 37999999988764
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.+....|++||+++++|++.++.+ .+||+||+|+||+|+|++.... ...
T Consensus 144 -----------------------~~~~~~~Y~~sKaa~~~~~~~l~~~---~~~i~v~~v~PG~v~T~~~~~~-~~~--- 193 (235)
T 3l77_A 144 -----------------------LIPYGGGYVSTKWAARALVRTFQIE---NPDVRFFELRPGAVDTYFGGSK-PGK--- 193 (235)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHH---CTTSEEEEEEECSBSSSTTTCC-SCC---
T ss_pred -----------------------cCCCcchHHHHHHHHHHHHHHHhhc---CCCeEEEEEeCCcccccccccc-CCc---
Confidence 3356678999999999999999544 4699999999999999854322 111
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
....++.+|+|+|+.++||++++....+|+.+..|+..
T Consensus 194 -------~~~~~~~~p~dva~~v~~l~~~~~~~~~~~~~~~~~~~ 231 (235)
T 3l77_A 194 -------PKEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRSVYQ 231 (235)
T ss_dssp -------CGGGTCBCHHHHHHHHHHHHTSCTTCCCCEEEECCTTS
T ss_pred -------ccccCCCCHHHHHHHHHHHHcCCCCCccceEEEeeccc
Confidence 01125789999999999999999999999999888753
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=297.50 Aligned_cols=245 Identities=18% Similarity=0.164 Sum_probs=187.7
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++++.+
T Consensus 9 ~~~l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 9 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999995 999999998888877777765567889999999999999999999998
Q ss_pred cC-CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.+ +++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++.+ .++||++||..+..
T Consensus 88 ~~~~~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~-------- 156 (266)
T 1xq1_A 88 MFGGKLDILINNLGAI-RSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV-------- 156 (266)
T ss_dssp HHTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC--------------
T ss_pred HhCCCCcEEEECCCCC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEccchhcc--------
Confidence 88 8999999999986 345666789999999999999999999999999998764 47999999988764
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||++++.|++.++.++ .+.||+|++|+||+|.|++......+
T Consensus 157 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 208 (266)
T 1xq1_A 157 ---------------------------SASVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDD 208 (266)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC----------
T ss_pred ---------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEeeCCCccchhhhhcCH
Confidence 23456789999999999999999999 56699999999999999864322111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 209 --~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 254 (266)
T 1xq1_A 209 --EFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGG 254 (266)
T ss_dssp -----------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred --HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCC
Confidence 1111222334556788999999999999998888899999999985
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=298.10 Aligned_cols=232 Identities=18% Similarity=0.202 Sum_probs=196.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+. +.++.++.+|++|.++++++++++.+.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 72 (264)
T 2dtx_A 5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----------EAKYDHIECDVTNPDQVKASIDHIFKEY 72 (264)
T ss_dssp GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----------SCSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999998643 3467889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 73 g~iD~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 138 (264)
T 2dtx_A 73 GSISVLVNNAGIE-SYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR--DPSIVNISSVQASI----------- 138 (264)
T ss_dssp SCCCEEEECCCCC-CCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS--SCEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECCchhcc-----------
Confidence 9999999999986 345677889999999999999999999999999998765 47999999998774
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch---
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--- 319 (399)
+.++...|++||++++.|++.++.|+ .+. |+||+|+||+|+|++... ...
T Consensus 139 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~vn~v~PG~v~t~~~~~-~~~~~~ 191 (264)
T 2dtx_A 139 ------------------------ITKNASAYVTSKHAVIGLTKSIALDY-APL-LRCNAVCPATIDTPLVRK-AAELEV 191 (264)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSBCSHHHHH-HHHHHH
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cCC-cEEEEEEeCCCcCcchhh-hhhccc
Confidence 34567899999999999999999999 565 999999999999985322 100
Q ss_pred --hh----hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 --LF----RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 --~~----~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ..........+.+++.+|+|+|+.++|+++++..+++|+++.+||.
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (264)
T 2dtx_A 192 GSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGG 245 (264)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 00 1111122234567889999999999999998888899999999985
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=297.98 Aligned_cols=241 Identities=19% Similarity=0.186 Sum_probs=200.6
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++ +.++.++.||++|.++++++++++ +
T Consensus 25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~-~ 99 (281)
T 3ppi_A 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL---GNRAEFVSTNVTSEDSVLAAIEAA-N 99 (281)
T ss_dssp CGGGTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHH-T
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHH-H
Confidence 4578999999999999999999999999996 9999999998888887776 467899999999999999999999 8
Q ss_pred cCCCccEEEec-CcccCCCCCC-----CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC----CCCceEEEEeccccc
Q 015844 161 SGRPLDVLVCN-AAVYLPTAKE-----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGN 230 (399)
Q Consensus 161 ~~g~id~lv~n-Ag~~~~~~~~-----~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~----~~~g~iV~vSS~~~~ 230 (399)
+++++|++||| ||+. ....+ .+.+.++|++++++|+.+++++++.+++.|.+.. ...|+||++||.++.
T Consensus 100 ~~~~id~lv~~aag~~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 178 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFG-VAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY 178 (281)
T ss_dssp TSSEEEEEEECCCCCC-CCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT
T ss_pred HhCCCCeEEEccCccc-ccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc
Confidence 88999999999 5543 33322 3578899999999999999999999999998621 125899999999987
Q ss_pred cCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
. +.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|
T Consensus 179 ~-----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T 222 (281)
T 3ppi_A 179 E-----------------------------------GQIGQTAYAAAKAGVIGLTIAAARDL-SSAGIRVNTIAPGTMKT 222 (281)
T ss_dssp S-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC
T ss_pred C-----------------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCCc
Confidence 4 44677899999999999999999999 56799999999999999
Q ss_pred CCCccccchhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 311 TGLFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
++... ..+ ..........+. +++.+|+|+|+.++||+++ .+++|++|.+||..
T Consensus 223 ~~~~~-~~~--~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~--~~~tG~~i~vdGG~ 276 (281)
T 3ppi_A 223 PIMES-VGE--EALAKFAANIPFPKRLGTPDEFADAAAFLLTN--GYINGEVMRLDGAQ 276 (281)
T ss_dssp HHHHT-TCH--HHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHC--SSCCSCEEEESTTC
T ss_pred hhhhc-ccH--HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHcC--CCcCCcEEEECCCc
Confidence 85432 211 111222333344 6788999999999999986 47999999999853
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=299.85 Aligned_cols=242 Identities=19% Similarity=0.229 Sum_probs=193.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+ |++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++... .++.++.+|++|+++++++++++.+.+
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 95 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEF 95 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGG
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 566 8999999999999999999999995 9999999988888877777543 578899999999999999999998999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCc-eEEEEeccccccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK-RLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g-~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||||+.....++.+.+.++|++++++|+.|++++++.++|.|++++ .| +||++||..+..
T Consensus 96 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~~IV~isS~~~~~---------- 163 (272)
T 2nwq_A 96 ATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG--AGASIVNLGSVAGKW---------- 163 (272)
T ss_dssp SSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--TTCEEEEECCGGGTS----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeCCchhcc----------
Confidence 99999999999864335677889999999999999999999999999998765 47 999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.........
T Consensus 164 -------------------------~~~~~~~Y~asKaa~~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~~~~~~~ 217 (272)
T 2nwq_A 164 -------------------------PYPGSHVYGGTKAFVEQFSLNLRCDL-QGTGVRVTNLEPGLCESEFSLVRFGGDQ 217 (272)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHTTC-TTSCCEEEEEEECSBC------------
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-CccCeEEEEEEcCCCcCcchhcccccch
Confidence 34567899999999999999999999 6779999999999999985432111000
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCc
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 369 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~ 369 (399)
..... ........+|+|+|+.++|+++++ .+++|+.+.+++...
T Consensus 218 ~~~~~---~~~~~~~~~pedvA~~v~~l~s~~-~~~~g~~i~v~~~~~ 261 (272)
T 2nwq_A 218 ARYDK---TYAGAHPIQPEDIAETIFWIMNQP-AHLNINSLEIMPVSQ 261 (272)
T ss_dssp -----------CCCCBCHHHHHHHHHHHHTSC-TTEEEEEEEEEETTE
T ss_pred HHHHH---hhccCCCCCHHHHHHHHHHHhCCC-ccCccceEEEeeccC
Confidence 00000 011123579999999999999874 468999998877543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=297.11 Aligned_cols=236 Identities=19% Similarity=0.196 Sum_probs=192.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++.. ++ .++.++.+|++|+++++++ .+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~-~~----~~~~~~~~D~~~~~~~~~~----~~~~ 72 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELE-KY----PGIQTRVLDVTKKKQIDQF----ANEV 72 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGG-GS----TTEEEEECCTTCHHHHHHH----HHHC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hc----cCceEEEeeCCCHHHHHHH----HHHh
Confidence 57899999999999999999999999995 9999999977655443 22 2688899999999998844 4457
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 73 ~~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 138 (246)
T 2ag5_A 73 ERLDVLFNVAGFVH-HGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASSV----------- 138 (246)
T ss_dssp SCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTT-----------
T ss_pred CCCCEEEECCccCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechHhCc-----------
Confidence 89999999999864 45666789999999999999999999999999998765 48999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCC-hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--- 318 (399)
+.+ +...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 139 ------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 193 (246)
T 2ag5_A 139 ------------------------KGVVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARG 193 (246)
T ss_dssp ------------------------BCCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSS
T ss_pred ------------------------CCCCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCcCcCcchhhhhhccc
Confidence 123 66789999999999999999999 5679999999999999985322110
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.+++.+|+|+|+.++||+++++.+++|+.|.+||.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG 242 (246)
T 2ag5_A 194 NPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGG 242 (246)
T ss_dssp SHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred CcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 0011111122234567788999999999999999888999999999985
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=299.17 Aligned_cols=232 Identities=21% Similarity=0.256 Sum_probs=189.1
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++ +..+.+|++|+++++++++++.+.
T Consensus 11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~-----------~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKG-----------LFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----------SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHH-----------hcCeeccCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999995 99999998643221 124889999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 79 ~g~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 145 (247)
T 1uzm_A 79 QGPVEVLVSNAGLS-ADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLW---------- 145 (247)
T ss_dssp HSSCSEEEEECSCC-C-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC------------
T ss_pred cCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEECCHhhcc----------
Confidence 99999999999986 445667889999999999999999999999999998765 48999999998774
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++... ..+.
T Consensus 146 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~~- 197 (247)
T 1uzm_A 146 -------------------------GIGNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRA-LDER- 197 (247)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHH-SCHH-
T ss_pred -------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCCcccchhh-cCHH-
Confidence 23567789999999999999999999 5679999999999999985321 1111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++||++++..+++|+++.+||.
T Consensus 198 -~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG 242 (247)
T 1uzm_A 198 -IQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242 (247)
T ss_dssp -HHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCCcCCEEEECCC
Confidence 111112233557789999999999999998888899999999985
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=292.97 Aligned_cols=234 Identities=21% Similarity=0.214 Sum_probs=193.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||+++|+.|+++|+ +|++++|+.++ ..+++ + +.++.+|++| ++++++++++.+.++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~---~--~~~~~~D~~~-~~~~~~~~~~~~~~g~i 71 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE---AAQSL---G--AVPLPTDLEK-DDPKGLVKRALEALGGL 71 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH---HHHHH---T--CEEEECCTTT-SCHHHHHHHHHHHHTSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH---HHHhh---C--cEEEecCCch-HHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999995 99999998765 23333 2 6788999999 99999999999989999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||+. ...++.+.+.++|++++++|+.++++++++++|.|++++ .|+||++||.++..+.
T Consensus 72 d~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~------------ 136 (239)
T 2ekp_A 72 HVLVHAAAVN-VRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG--WGRVLFIGSVTTFTAG------------ 136 (239)
T ss_dssp CEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC------------
T ss_pred CEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhccCC------------
Confidence 9999999986 345677889999999999999999999999999998765 4899999999887411
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
..++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++... .........
T Consensus 137 ---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~ 193 (239)
T 2ekp_A 137 ---------------------GPVPIPAYTTAKTALLGLTRALAKEW-ARLGIRVNLLCPGYVETEFTLP-LRQNPELYE 193 (239)
T ss_dssp ---------------------TTSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHH-HHTCHHHHH
T ss_pred ---------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCccCchhhc-cccCHHHHH
Confidence 11467799999999999999999999 5679999999999999985422 110001111
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
......+.+++.+|+|+|+.++||++++..+++|+++.+||.
T Consensus 194 ~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 194 PITARIPMGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp HHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECCC
Confidence 112234567789999999999999998888899999999985
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=291.01 Aligned_cols=241 Identities=20% Similarity=0.198 Sum_probs=202.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh-ccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++ ...+.++.++.+|++|+++++++++++.+.+++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999995 9999999988888777776 444567999999999999999999999999999
Q ss_pred ccEEEecCcccCCCCC---CCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAK---EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 165 id~lv~nAg~~~~~~~---~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||||||+.. ..+ +.+.+.++|++++++|+.+++++++.++|.|++.+ .++||++||..+..
T Consensus 81 id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~---------- 147 (250)
T 2cfc_A 81 IDVLVNNAGITG-NSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG--AGVIVNIASVASLV---------- 147 (250)
T ss_dssp CCEEEECCCCCC-CTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred CCEEEECCCCCC-CCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhcc----------
Confidence 999999999863 233 56778999999999999999999999999998765 47999999998764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.++ .+.||++++|+||+|.|++...... ..
T Consensus 148 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~-~~ 200 (250)
T 2cfc_A 148 -------------------------AFPGRSAYTTSKGAVLQLTKSVAVDY-AGSGIRCNAVCPGMIETPMTQWRLD-QP 200 (250)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTTHHHHT-SH
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccCccccccC-CH
Confidence 33567899999999999999999998 5669999999999999985432111 00
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++++++++..+++|+++.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 246 (250)
T 2cfc_A 201 ELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGA 246 (250)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence 1111111233556788999999999999999888899999999985
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=297.59 Aligned_cols=244 Identities=17% Similarity=0.173 Sum_probs=205.0
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..+++.+++...+.++.++.+|++|.++++++++++.+
T Consensus 39 ~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 117 (285)
T 2c07_A 39 YYCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 117 (285)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHH
Confidence 3468899999999999999999999999995 899999998888887777766677899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.+.+ .++||++||.++..
T Consensus 118 ~~~~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------- 185 (285)
T 2c07_A 118 EHKNVDILVNNAGIT-RDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLT--------- 185 (285)
T ss_dssp HCSCCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH---------
T ss_pred hcCCCCEEEECCCCC-CCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhcc---------
Confidence 999999999999986 445677889999999999999999999999999998764 47999999998764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.++ .+.||+|++|+||+|+|++... ..+.
T Consensus 186 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~ 237 (285)
T 2c07_A 186 --------------------------GNVGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDK-ISEQ 237 (285)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC------CCHH
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcEecCchhh-cCHH
Confidence 23567789999999999999999998 5669999999999999985432 2111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++++++++..+++|+++.+||.
T Consensus 238 --~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG 282 (285)
T 2c07_A 238 --IKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 282 (285)
T ss_dssp --HHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --HHHHHHhhCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence 111111223456788999999999999998888899999999884
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=291.70 Aligned_cols=235 Identities=17% Similarity=0.232 Sum_probs=189.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++. .++.++.+|++|+++++++++++.+.++++|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 76 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELG---DNLYIAQLDVRNRAAIEEMLASLPAEWCNID 76 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999995 99999999888877777663 4688999999999999999999999999999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 77 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------------- 139 (248)
T 3asu_A 77 ILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGSW--------------- 139 (248)
T ss_dssp EEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS---------------
T ss_pred EEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEccchhcc---------------
Confidence 9999999863345666889999999999999999999999999998764 47999999998874
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc-CCCCccccchhhhhhc
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIPLFRLLF 325 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~-T~~~~~~~~~~~~~~~ 325 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+ |++.............
T Consensus 140 --------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~ 198 (248)
T 3asu_A 140 --------------------PYAGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAE 198 (248)
T ss_dssp --------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECSBCC----------------
T ss_pred --------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeccccccCcchhhcccCchHHHH
Confidence 34567899999999999999999999 6779999999999999 8854211110000000
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. .......+|+|+|+.++|+++++ .+++|+.+.++..
T Consensus 199 ~~---~~~~~~~~p~dvA~~v~~l~s~~-~~~~g~~i~v~~~ 236 (248)
T 3asu_A 199 KT---YQNTVALTPEDVSEAVWWVSTLP-AHVNINTLEMMPV 236 (248)
T ss_dssp ---------CCBCHHHHHHHHHHHHHSC-TTCCCCEEEECCT
T ss_pred HH---HhccCCCCHHHHHHHHHHHhcCC-ccceeeEEEEccc
Confidence 10 11123569999999999999975 4689999887764
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-39 Score=294.09 Aligned_cols=246 Identities=18% Similarity=0.144 Sum_probs=204.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|++|||||++|||++++++|+++|+ +|++++| +.+..++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 9999999 777777777777655678899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.+++++++.+++.|.+++. .++||++||..+..
T Consensus 83 ~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~isS~~~~~---------- 150 (261)
T 1gee_A 83 FGKLDVMINNAGLEN-PVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEKI---------- 150 (261)
T ss_dssp HSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CCEEEEeCCHHhcC----------
Confidence 999999999999863 345667889999999999999999999999999987531 37999999988763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.+++.++.++ .+.||+|++|+||+|.|++... .....
T Consensus 151 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~~ 203 (261)
T 1gee_A 151 -------------------------PWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAE-KFADP 203 (261)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHH-HHHSH
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCcCCchhhh-cccCh
Confidence 34567899999999999999999999 5669999999999999985422 11000
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..........+.+++.+|+|+|+.+++++++...+++|+++.+||..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 250 (261)
T 1gee_A 204 EQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp HHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCc
Confidence 11111111234567889999999999999987778999999999853
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=315.98 Aligned_cols=270 Identities=19% Similarity=0.171 Sum_probs=210.3
Q ss_pred chHhHhHHhhcc--cCCceeeccccCCCCccccCCCcCccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH
Q 015844 45 SSALRCKREFSQ--RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (399)
Q Consensus 45 ~~a~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~ 122 (399)
..++|.+....+ +++.+......... .+......+++|++|||||++|||+++|++|+++|+ +|++++|+..
T Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~ 248 (454)
T 3u0b_A 175 ESTMRFILSAKSAYVDGQVFRVGAADST-----PPADWDKPLDGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGA 248 (454)
T ss_dssp HHHHHHHSSGGGTTCCSEEEEECSCCCC-----CCSCTTSTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGG
T ss_pred HHHHHHhhCCceeEEcCEEEEecCCCCC-----CCCccccCCCCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 566777766555 66666544322111 112223457899999999999999999999999997 8999998642
Q ss_pred --HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC-ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhH
Q 015844 123 --KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP-LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199 (399)
Q Consensus 123 --~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g 199 (399)
..++..+++ .+.++.||++|.++++++++++.+.+++ ||+||||||+. ....+.+++.++|+++|++|+.|
T Consensus 249 ~~~l~~~~~~~-----~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~lV~nAGv~-~~~~~~~~~~~~~~~~~~~nv~g 322 (454)
T 3u0b_A 249 AEDLKRVADKV-----GGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGIT-RDKLLANMDEKRWDAVIAVNLLA 322 (454)
T ss_dssp HHHHHHHHHHH-----TCEEEECCTTSTTHHHHHHHHHHHHSTTCCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHHcCCCceEEEECCccc-CCCccccCCHHHHHHHHHHHHHH
Confidence 233333333 3468899999999999999999999876 99999999997 45677789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHH
Q 015844 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKV 279 (399)
Q Consensus 200 ~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 279 (399)
++++++++.+.|.+++ .++||++||.++.. +.+++..|++||+
T Consensus 323 ~~~l~~~~~~~~~~~~--~g~iV~iSS~a~~~-----------------------------------g~~g~~~YaasKa 365 (454)
T 3u0b_A 323 PQRLTEGLVGNGTIGE--GGRVIGLSSMAGIA-----------------------------------GNRGQTNYATTKA 365 (454)
T ss_dssp HHHHHHHHHHTTSSCT--TCEEEEECCHHHHH-----------------------------------CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcC--CCEEEEEeChHhCC-----------------------------------CCCCCHHHHHHHH
Confidence 9999999999987654 58999999999885 3467889999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCc
Q 015844 280 CNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSG 359 (399)
Q Consensus 280 a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G 359 (399)
++++|++.++.++ .+.||+||+|+||+|+|+|... ....... ......+.++..+|+|+|+.++||+++.+.++||
T Consensus 366 al~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~-~~~~~~~--~~~~~~~l~r~g~pedvA~~v~fL~s~~a~~itG 441 (454)
T 3u0b_A 366 GMIGLAEALAPVL-ADKGITINAVAPGFIETKMTEA-IPLATRE--VGRRLNSLFQGGQPVDVAELIAYFASPASNAVTG 441 (454)
T ss_dssp HHHHHHHHHHHHH-HTTTCEEEEEEECSBCC-----------CH--HHHHSBTTSSCBCHHHHHHHHHHHHCGGGTTCCS
T ss_pred HHHHHHHHHHHHh-hhcCcEEEEEEcCcccChhhhh-cchhhHH--HHHhhccccCCCCHHHHHHHHHHHhCCccCCCCC
Confidence 9999999999999 6679999999999999986432 1111110 0111234567789999999999999999999999
Q ss_pred eEEccCCC
Q 015844 360 VYWSWNKD 367 (399)
Q Consensus 360 ~~~~~dg~ 367 (399)
+.|.+||.
T Consensus 442 ~~i~vdGG 449 (454)
T 3u0b_A 442 NTIRVCGQ 449 (454)
T ss_dssp CEEEESSS
T ss_pred cEEEECCc
Confidence 99999984
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=294.40 Aligned_cols=233 Identities=14% Similarity=0.167 Sum_probs=192.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-e--cChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMA-C--RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|++|||||++|||+++|+.|+++|+ +|+++ + |+.+.+++..+++ .+ +|+.|.++++++++++.+.+
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~--~~-------~~~~~~~~v~~~~~~~~~~~ 70 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESEN--PG-------TIALAEQKPERLVDATLQHG 70 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHS--TT-------EEECCCCCGGGHHHHHGGGS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHh--CC-------CcccCHHHHHHHHHHHHHHc
Confidence 57999999999999999999999995 99999 6 9988877776665 22 23347788889999999999
Q ss_pred CCccEEEecCcccCCC--CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPT--AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 163 g~id~lv~nAg~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++|+||||||+.... .++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||.++..
T Consensus 71 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 139 (244)
T 1zmo_A 71 EAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG--GASVIFITSSVGKK--------- 139 (244)
T ss_dssp SCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS---------
T ss_pred CCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECChhhCC---------
Confidence 9999999999986431 5677889999999999999999999999999998765 58999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc--cccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF--REHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~--~~~~ 318 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.. ....
T Consensus 140 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~ 192 (244)
T 1zmo_A 140 --------------------------PLAYNPLYGPARAATVALVESAAKTL-SRDGILLYAIGPNFFNNPTYFPTSDWE 192 (244)
T ss_dssp --------------------------CCTTCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCBTTTBCHHHHH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCccccccccc
Confidence 34567789999999999999999999 567999999999999998541 2111
Q ss_pred hhhhhhchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ......... ..+.+++.+|||+|+.++||+++...+++|+++.+||.
T Consensus 193 ~-~~~~~~~~~~~~p~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 193 N-NPELRERVDRDVPLGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp H-CHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred c-hHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence 0 011112222 35667889999999999999999888999999999985
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=289.70 Aligned_cols=244 Identities=18% Similarity=0.189 Sum_probs=200.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcE-EEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY-TIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++ +.++ .++.+|++|.++++++++++.
T Consensus 6 ~~~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (254)
T 2wsb_A 6 VFRLDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQEL---GAAVAARIVADVTDAEAMTAAAAEAE 81 (254)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---cccceeEEEEecCCHHHHHHHHHHHH
Confidence 3468899999999999999999999999995 9999999988777776665 3456 889999999999999999998
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+ ++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|++++ .++||++||..+..+.
T Consensus 82 ~-~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~~------ 151 (254)
T 2wsb_A 82 A-VAPVSILVNSAGIAR-LHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIVNLGSMSGTIVN------ 151 (254)
T ss_dssp H-HSCCCEEEECCCCCC-CBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC------
T ss_pred h-hCCCcEEEECCccCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEecchhccCC------
Confidence 8 889999999999864 35666788999999999999999999999999998765 4799999998876411
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+..+...|++||++++.+++.++.++ .+.||++++|+||+|.|++... ...
T Consensus 152 ---------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~Pg~v~t~~~~~-~~~ 202 (254)
T 2wsb_A 152 ---------------------------RPQFASSYMASKGAVHQLTRALAAEW-AGRGVRVNALAPGYVATEMTLK-MRE 202 (254)
T ss_dssp ---------------------------SSSCBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHH-HHT
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecccCchhhhc-ccc
Confidence 11123789999999999999999998 5669999999999999984321 111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+++.+|+|+|+.+++++++...+++|+++.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 203 RPELFETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp CHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 001111122233556788999999999999998877899999999985
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=293.69 Aligned_cols=246 Identities=17% Similarity=0.132 Sum_probs=203.4
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++++|++|||||++|||++++++|+++|+ +|++++|+.+..+...+.+...+.++.++.+|++|.++++++++++.+
T Consensus 29 ~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 29 LFSLKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEK 107 (279)
T ss_dssp GGCCTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999995 999999987666666555544466789999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCC-CCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.++++|+||||||+.....++. +.+.++|++++++|+.|++++++.+++.|++.+ .++||++||..+..+.
T Consensus 108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~~------ 179 (279)
T 3ctm_A 108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG--KGSLIITSSISGKIVN------ 179 (279)
T ss_dssp HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCCTTSCC-------
T ss_pred HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEECchHhccCC------
Confidence 9999999999999864424555 778899999999999999999999999998764 4799999998876410
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
..++...|++||++++.|++.++.++ .+.| +||+|+||+|+|++... ..+
T Consensus 180 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~-~v~~v~Pg~v~t~~~~~-~~~ 229 (279)
T 3ctm_A 180 ---------------------------IPQLQAPYNTAKAACTHLAKSLAIEW-APFA-RVNTISPGYIDTDITDF-ASK 229 (279)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHHT-TTTC-EEEEEEECSBSSTTTSS-CCH
T ss_pred ---------------------------CCCCcccHHHHHHHHHHHHHHHHHHh-cccC-CEEEEeccCCccccccc-cCh
Confidence 13567899999999999999999999 5668 99999999999985522 111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 230 --~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG 275 (279)
T 3ctm_A 230 --DMKAKWWQLTPLGREGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275 (279)
T ss_dssp --HHHHHHHHHSTTCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --HHHHHHHHhCCccCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 1111222344567789999999999999998888899999999985
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=295.66 Aligned_cols=245 Identities=16% Similarity=0.204 Sum_probs=203.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-----CCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..+...+++.. .+.++.++.+|++|.+++++++++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 67899999999999999999999999995 999999998888777777643 356799999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+.+.++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.+.+.. .++||++||.+ ..
T Consensus 94 ~~~~~g~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~-~~------ 163 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQ-FLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPT-KA------ 163 (303)
T ss_dssp HHHHHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCC-TT------
T ss_pred HHHHcCCCCEEEECCCCC-CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCeEEEEEeec-cc------
Confidence 999999999999999975 334566788999999999999999999999999655433 47999999987 42
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|+++|+++..+++.++.++ .+.||+|++|+||+|.|++.....
T Consensus 164 -----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~ 213 (303)
T 1yxm_A 164 -----------------------------GFPLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQTAVENY 213 (303)
T ss_dssp -----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTGGGTTS
T ss_pred -----------------------------CCCcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCcccchhhhhc
Confidence 33567789999999999999999998 566999999999999998532221
Q ss_pred chh-hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 318 IPL-FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
... ...........+.+++.+|+|+|+.+++++++...+++|+++.+||..
T Consensus 214 ~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~ 265 (303)
T 1yxm_A 214 GSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGR 265 (303)
T ss_dssp GGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCe
Confidence 111 111222233445677899999999999999988888999999999854
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=288.58 Aligned_cols=243 Identities=21% Similarity=0.212 Sum_probs=203.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++... .++.++.+|++|+++++++++++.+.+
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP-DQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcc-CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 9999999988877777766543 578999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++.+. +++||++||..+..
T Consensus 81 ~~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~----------- 147 (251)
T 1zk4_A 81 GPVSTLVNNAGIA-VNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGFV----------- 147 (251)
T ss_dssp SSCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCCchhcc-----------
Confidence 9999999999986 4456678899999999999999999999999999987641 27999999998774
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc--CCceEEEEeeCCcccCCCCccccchh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.++ . +.||++++|+||+|.|++... ....
T Consensus 148 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~~~~i~v~~v~Pg~v~t~~~~~-~~~~ 201 (251)
T 1zk4_A 148 ------------------------GDPSLGAYNASKGAVRIMSKSAALDC-ALKDYDVRVNTVHPGYIKTPLVDD-LPGA 201 (251)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HHTTCSEEEEEEEECCBCCHHHHT-STTH
T ss_pred ------------------------CCCCCccchHHHHHHHHHHHHHHHHh-cccCCCeEEEEEeeCcCcchhhhh-cCch
Confidence 33567899999999999999999998 4 679999999999999985432 1111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 202 -~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 247 (251)
T 1zk4_A 202 -EEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp -HHHHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -hhhHHHhhcCCCCCCcCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 0000011223456788999999999999998877899999999985
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=295.40 Aligned_cols=229 Identities=16% Similarity=0.148 Sum_probs=190.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHH-cCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++|++|||||++|||+++|+.|++ .| .+|++++|+.+. ...++.++.+|++|+++++++++.+. ++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~ 69 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQSF----------SAENLKFIKADLTKQQDITNVLDIIK--NV 69 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSCCC----------CCTTEEEEECCTTCHHHHHHHHHHTT--TC
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEecccccc----------ccccceEEecCcCCHHHHHHHHHHHH--hC
Confidence 578999999999999999999999 67 589999887531 12457899999999999999996553 67
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++. |+||++||..+..
T Consensus 70 ~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----g~iv~~sS~~~~~------------ 132 (244)
T 4e4y_A 70 SFDGIFLNAGILI-KGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG----ASIVFNGSDQCFI------------ 132 (244)
T ss_dssp CEEEEEECCCCCC-CBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE----EEEEEECCGGGTC------------
T ss_pred CCCEEEECCccCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC----cEEEEECCHHHcc------------
Confidence 9999999999974 4677789999999999999999999999999998764 6999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh--
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-- 321 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~-- 321 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+|+|++.........
T Consensus 133 -----------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 188 (244)
T 4e4y_A 133 -----------------------AKPNSFAYTLSKGAIAQMTKSLALDL-AKYQIRVNTVCPGTVDTDLYRNLIQKYANN 188 (244)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESCBCCHHHHHHHHHHHHH
T ss_pred -----------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCeEEEEEecCccCchhhHHHHHhhhhh
Confidence 44677899999999999999999999 6679999999999999985432111100
Q ss_pred ------hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 ------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ------~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.++||+++++.+++|+.|.+||.
T Consensus 189 ~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 240 (244)
T 4e4y_A 189 VGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGG 240 (244)
T ss_dssp HTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCC
Confidence 0111222344567889999999999999999988999999999985
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=289.83 Aligned_cols=246 Identities=19% Similarity=0.215 Sum_probs=202.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..+...+++... .++.++.+|++|+++++++++++.+.
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 89 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAK 89 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCC-CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999987777766666432 37899999999999999999999999
Q ss_pred CCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||..+..
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------- 158 (278)
T 2bgk_A 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSFT--------- 158 (278)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGTC---------
T ss_pred cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CCeEEEEeeccccC---------
Confidence 9999999999998642 24566788999999999999999999999999998765 47999999998774
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCC-hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.+ +...|++||++++.+++.++.++ .+.||++++|+||+|.|++.......
T Consensus 159 --------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 211 (278)
T 2bgk_A 159 --------------------------AGEGVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGV 211 (278)
T ss_dssp --------------------------CCTTSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTSSSC
T ss_pred --------------------------CCCCCCcchHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeceecchhhhhhccc
Confidence 223 56789999999999999999998 56699999999999999864332111
Q ss_pred hhhhhchhhHH--HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQK--YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~--~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........... .+.+++.+|+|+|+.++++++++..+++|+++.+||.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 261 (278)
T 2bgk_A 212 DSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGG 261 (278)
T ss_dssp CHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred chhHHHHhhhcccccccccCCHHHHHHHHHHHcCcccccCCCCEEEECCc
Confidence 11111111111 1235688999999999999998877899999999985
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=312.42 Aligned_cols=243 Identities=10% Similarity=0.076 Sum_probs=194.9
Q ss_pred CCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecCh---------HHHHHHHHHhccC---CCcEEEEEecCCCH--
Q 015844 85 RKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMA---KENYTIMHLDLASL-- 148 (399)
Q Consensus 85 ~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~---------~~~~~~~~~~~~~---~~~~~~~~~Dvs~~-- 148 (399)
++|++|||||++ |||+++|++|+++|+ +|++++|+. ++.+.....+... ...+.++.||+++.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~-~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 79 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccch
Confidence 368999999985 999999999999996 999777654 2222222222221 23478899999988
Q ss_pred H------------------HHHHHHHHHHHcCCCccEEEecCcccC-CCCCCCCCChhhhhHhhhchhhHHHHHHHHHHH
Q 015844 149 D------------------SVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (399)
Q Consensus 149 ~------------------~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 209 (399)
+ +++++++++.+.+++||+||||||+.. ...++.+.+.++|+++|++|+.|+++++++++|
T Consensus 80 ~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p 159 (329)
T 3lt0_A 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred hhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8 999999999999999999999999742 346677889999999999999999999999999
Q ss_pred HHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhh-hHHHhHHHHHHHHHHH
Q 015844 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK-AYKDSKVCNMLTMQEF 288 (399)
Q Consensus 210 ~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~a~~~~~~~l 288 (399)
+|+++ |+||++||.++.. +.++.. .|++||+|+++|++.|
T Consensus 160 ~m~~~----g~Iv~isS~~~~~-----------------------------------~~~~~~~~Y~asKaal~~~~~~l 200 (329)
T 3lt0_A 160 IMKPQ----SSIISLTYHASQK-----------------------------------VVPGYGGGMSSAKAALESDTRVL 200 (329)
T ss_dssp GEEEE----EEEEEEECGGGTS-----------------------------------CCTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHhhC----CeEEEEeCccccC-----------------------------------CCCcchHHHHHHHHHHHHHHHHH
Confidence 99874 7999999998874 335554 8999999999999999
Q ss_pred HHhhccC-CceEEEEeeCCcccCCCCccccch-----------------------------------------hh-hhhc
Q 015844 289 HRRFHEE-TGIAFASLYPGCIATTGLFREHIP-----------------------------------------LF-RLLF 325 (399)
Q Consensus 289 a~~~~~~-~gi~v~~v~PG~v~T~~~~~~~~~-----------------------------------------~~-~~~~ 325 (399)
+.|+ ++ .||+||+|+||+|+|++....... .. ....
T Consensus 201 a~el-~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (329)
T 3lt0_A 201 AYHL-GRNYNIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIE 279 (329)
T ss_dssp HHHH-HHHHCCEEEEEEECCCCCHHHHTCC------------------------------------------CHHHHHHH
T ss_pred HHHh-CCccCeEEEEEecceeechhHhhhhhhcccccccccccccccccccchhhcccccchhhhhhhhcccchhHHHHH
Confidence 9999 55 699999999999999854321100 00 0012
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
......+.+++.+|+|+|+.++||+++.+.++||+.|.+||..
T Consensus 280 ~~~~~~p~~r~~~peevA~~v~fL~s~~a~~itG~~i~vdGG~ 322 (329)
T 3lt0_A 280 YSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGL 322 (329)
T ss_dssp HHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHhhcCcccCcCCHHHHHHHHHHHhCchhccccCcEEEEcCCe
Confidence 2334556788999999999999999999899999999999953
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=287.10 Aligned_cols=243 Identities=18% Similarity=0.178 Sum_probs=204.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||+||||++++++|+++|+ +|++++|+.+..+...+++...+.++.++.+|++|+++++++++++.+.
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999995 9999999988877777777655678899999999999999999999998
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+... .++ +.+.++|++++++|+.+++++++.++|.|++.+ .++||++||..+..
T Consensus 86 ~~~~d~vi~~Ag~~~~-~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 151 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGP-KPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAEN---------- 151 (255)
T ss_dssp HSSCCEEEECCCCCCC-CCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC----------
T ss_pred cCCCCEEEECCCCCCC-CCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcC----------
Confidence 9999999999998643 344 678999999999999999999999999998764 47999999988763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||.+.|++......+.
T Consensus 152 -------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~- 204 (255)
T 1fmc_A 152 -------------------------KNINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPE- 204 (255)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCHH-
T ss_pred -------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecccCcchhhhhccChH-
Confidence 33567789999999999999999998 567999999999999998543221111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++++++++..+++|+.+.++|.
T Consensus 205 -~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 249 (255)
T 1fmc_A 205 -IEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_dssp -HHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHhcCCcccCCCHHHHHHHHHHHhCCccccCCCcEEEECCc
Confidence 111122234556788999999999999998777899999999885
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=288.74 Aligned_cols=242 Identities=21% Similarity=0.219 Sum_probs=185.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|++|||||++|||++++++|+++|+ +|+++ .|+.+..++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 88888 67777777766666555678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++.+++|+.|++++++.++|.|++.+ .++||++||..+..
T Consensus 81 ~~~~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 147 (247)
T 2hq1_A 81 FGRIDILVNNAGITR-DTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK--SGKIINITSIAGII---------- 147 (247)
T ss_dssp HSCCCEEEECC----------------CHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECC---------------
T ss_pred cCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcc----------
Confidence 999999999999863 34566778899999999999999999999999998764 47999999987764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.++ .+.||++|+|+||+++|++.. ...+.
T Consensus 148 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~-~~~~~- 199 (247)
T 2hq1_A 148 -------------------------GNAGQANYAASKAGLIGFTKSIAKEF-AAKGIYCNAVAPGIIKTDMTD-VLPDK- 199 (247)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHH-TSCHH-
T ss_pred -------------------------CCCCCcHhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEEEEEeccchh-hcchH-
Confidence 23567789999999999999999999 566999999999999997432 11111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 200 -~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 200 -VKEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp -HHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHhhCCCCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 001111123456788999999999999998877899999999884
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-39 Score=293.06 Aligned_cols=233 Identities=15% Similarity=0.169 Sum_probs=191.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||++|||+++|+.|+++|+ +|++++|+.++.+...+ +...+.++..+ |.++++++++++.+.++++|
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~-l~~~~~~~~~~-----d~~~v~~~~~~~~~~~g~iD 74 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEA-FAETYPQLKPM-----SEQEPAELIEAVTSAYGQVD 74 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHH-HHHHCTTSEEC-----CCCSHHHHHHHHHHHHSCCC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-HHhcCCcEEEE-----CHHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999999999995 99999999877666554 54334555444 66778888999888889999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..
T Consensus 75 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------------- 137 (254)
T 1zmt_A 75 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPFG--------------- 137 (254)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTTS---------------
T ss_pred EEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCccccc---------------
Confidence 9999999863345667889999999999999999999999999998765 47999999998874
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc---------cCCCCcccc
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI---------ATTGLFREH 317 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v---------~T~~~~~~~ 317 (399)
+.++...|++||++++.|++.++.|+ ++.||+||+|+||+| +|++... .
T Consensus 138 --------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~-~ 195 (254)
T 1zmt_A 138 --------------------PWKELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKT-N 195 (254)
T ss_dssp --------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTT-C
T ss_pred --------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCccccccccccCCCccccc-C
Confidence 33567899999999999999999999 567999999999999 6653221 1
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
+ ..........+.+++.+|+|+|+.++||++++..+++|+++.+||..
T Consensus 196 -~--~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 196 -P--EHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGF 243 (254)
T ss_dssp -H--HHHHHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred -h--HHHHHHhccCCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 1 11111223345677899999999999999998889999999999853
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=288.31 Aligned_cols=251 Identities=17% Similarity=0.216 Sum_probs=201.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++|++|||||++|||++++++|+++|+ +|++++|+....++..+++.. .+.++.++.+|++|.++++++++++.+
T Consensus 10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 88 (265)
T 1h5q_A 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA 88 (265)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 999999976554444444422 256789999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|.+++. .++||++||..+..+....
T Consensus 89 ~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~---- 162 (265)
T 1h5q_A 89 DLGPISGLIANAGVSV-VKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQSS---- 162 (265)
T ss_dssp HSCSEEEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCEEE----
T ss_pred hcCCCCEEEECCCcCC-CCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCC-CceEEEeCCchhhcccccc----
Confidence 9999999999999863 455667899999999999999999999999999987531 3799999998876421000
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
..+..+...|++||++++.|++.++.++ .+.||+|++|+||+|+|++... ..+.
T Consensus 163 ------------------------~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~ 216 (265)
T 1h5q_A 163 ------------------------LNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAH-MDKK 216 (265)
T ss_dssp ------------------------TTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGG-SCHH
T ss_pred ------------------------ccccccccccHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCccccccccc-cchh
Confidence 0012346789999999999999999998 5669999999999999985432 2111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 217 --~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 217 --IRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp --HHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred --HHHHHHhcCcccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 111112234556788999999999999998888899999999985
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=286.43 Aligned_cols=239 Identities=18% Similarity=0.153 Sum_probs=198.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|++|||||++|||++++++|+++|+ +|++ .+|+.+..+...+++...+.++.++.+|++|+++++++++++.+.+++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999995 8887 589887777776666555668899999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+.. ..++.+.+.++|++++++|+.|++++++.+.|.|.+++ .++||++||..+..
T Consensus 80 id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~------------- 143 (244)
T 1edo_A 80 IDVVVNNAGITR-DTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGLI------------- 143 (244)
T ss_dssp CSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH-------------
T ss_pred CCEEEECCCCCC-CcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC--CCEEEEECChhhcC-------------
Confidence 999999999863 45566788999999999999999999999999998764 47999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
+.++...|++||++++.|++.++.++ .+.||++++|+||+|+|++... ..+. ..
T Consensus 144 ----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~--~~ 197 (244)
T 1edo_A 144 ----------------------GNIGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAK-LGED--ME 197 (244)
T ss_dssp ----------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHT-TCHH--HH
T ss_pred ----------------------CCCCCccchhhHHHHHHHHHHHHHHh-hhcCCEEEEEeeCccccchhhh-cChH--HH
Confidence 23567789999999999999999998 5679999999999999985322 1111 01
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhh-cCCCCCCCceEEccCCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVV-SDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~-~~~~~~~~G~~~~~dg~ 367 (399)
.......+.+++.+|+|+|+.+++++ ++...+++|+++.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG 241 (244)
T 1edo_A 198 KKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp HHHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence 11112234567889999999999999 55566799999999884
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=288.03 Aligned_cols=243 Identities=20% Similarity=0.213 Sum_probs=199.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-------CcEEEEEecCCCHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-------ENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dvs~~~~v~~~~ 155 (399)
++++|++|||||++|||+++++.|+++|+ +|++++|+.+..++..+++...+ .++.++.+|++|.+++++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 57889999999999999999999999995 99999999888777777665444 57889999999999999999
Q ss_pred HHHHHcCCCc-cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCC
Q 015844 156 DTFRRSGRPL-DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (399)
Q Consensus 156 ~~~~~~~g~i-d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~ 234 (399)
+.+.+.++++ |+||||||+.. ..++.+.+.++|++++++|+.|++++++++.|.|.+++. .|+||++||..+..
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~--- 157 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQ-DEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGC-RGSIINISSIVGKV--- 157 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCTHHHH---
T ss_pred HHHHHHhCCCCeEEEECCCcCC-CcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC-CceEEEECChhhcc---
Confidence 9999999999 99999999863 455667899999999999999999999999999987531 37999999988764
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.++...|++||++++.|++.++.++ .+.||++++|+||+|.|++..
T Consensus 158 --------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 204 (264)
T 2pd6_A 158 --------------------------------GNVGQTNYAASKAGVIGLTQTAAREL-GRHGIRCNSVLPGFIATPMTQ 204 (264)
T ss_dssp --------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSCC--
T ss_pred --------------------------------CCCCChhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeecccccchh
Confidence 33567899999999999999999998 566999999999999998543
Q ss_pred cccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..+ ..........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 205 ~-~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 254 (264)
T 2pd6_A 205 K-VPQ--KVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGG 254 (264)
T ss_dssp -----------CTGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred h-cCH--HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 2 111 1111112223456788999999999999998777899999999985
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=294.64 Aligned_cols=234 Identities=18% Similarity=0.193 Sum_probs=193.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++...+.++.++.||++|.++++++++++.+.
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 358899999999999999999999999995 9999999999998888888777788999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||.++..
T Consensus 106 ~g~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 173 (301)
T 3tjr_A 106 LGGVDVVFSNAGIV-VAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGT-GGHIAFTASFAGLV---------- 173 (301)
T ss_dssp HSSCSEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGGGTS----------
T ss_pred CCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhcC----------
Confidence 99999999999997 4456778899999999999999999999999999987642 47999999999875
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|++.|++.++.|+ .+.||+|++|+||+|+|++.........
T Consensus 174 -------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 227 (301)
T 3tjr_A 174 -------------------------PNAGLGTYGVAKYGVVGLAETLAREV-KPNGIGVSVLCPMVVETKLVSNSERIRG 227 (301)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEECCSCCCSSHHHHHHHHC-
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCccccccccccccccc
Confidence 44678899999999999999999999 5679999999999999985432110000
Q ss_pred ---h---hhchhhHHH-HhcCCCChHHHHHHHHHhhcCCC
Q 015844 322 ---R---LLFPPFQKY-ITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 322 ---~---~~~~~~~~~-~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
. .....+... ......+|+|+|+.++..+....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 228 ADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTC
T ss_pred hhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 0 000001111 12346799999999999987653
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=287.58 Aligned_cols=241 Identities=21% Similarity=0.194 Sum_probs=195.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++ +.++.++.+|++|+++++++++++.+.
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999987777766665 457899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCC-----CCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC----CCceEEEEeccccccC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEP-----TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITGNTN 232 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~----~~g~iV~vSS~~~~~~ 232 (399)
++++|+||||||+........ +.+.++|++++++|+.+++++++++.|.|+++.. +.++||++||..+..
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~- 162 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE- 162 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC-
Confidence 999999999999864322221 3688999999999999999999999999987611 257999999998764
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
+.++...|++||++++.|++.++.++ .+.||+||+|+||+|+|++
T Consensus 163 ----------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~ 207 (265)
T 2o23_A 163 ----------------------------------GQVGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPL 207 (265)
T ss_dssp ----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC-
T ss_pred ----------------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccccCcc
Confidence 33567899999999999999999999 5669999999999999985
Q ss_pred CccccchhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 313 LFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ..+. .........+. +++.+|+|+|+.+++++++ .+++|+.+.+||.
T Consensus 208 ~~~-~~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~i~vdgG 258 (265)
T 2o23_A 208 LTS-LPEK--VCNFLASQVPFPSRLGDPAEYAHLVQAIIEN--PFLNGEVIRLDGA 258 (265)
T ss_dssp ------------CHHHHTCSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTT
T ss_pred ccc-cCHH--HHHHHHHcCCCcCCCCCHHHHHHHHHHHhhc--CccCceEEEECCC
Confidence 432 1111 11111222344 6788999999999999964 4789999999985
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=284.00 Aligned_cols=217 Identities=15% Similarity=0.156 Sum_probs=182.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+ +|++|+++++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~--------------------~D~~~~~~v~~~~~~~--- 57 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG--------------------LDISDEKSVYHYFETI--- 57 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT--------------------CCTTCHHHHHHHHHHH---
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc--------------------cCCCCHHHHHHHHHHh---
Confidence 467899999999999999999999999995 9999999753 8999999999998865
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++ +|+||++||..+..
T Consensus 58 -g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~----~g~iv~~sS~~~~~---------- 122 (223)
T 3uce_A 58 -GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ----GGSITLTSGMLSRK---------- 122 (223)
T ss_dssp -CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE----EEEEEEECCGGGTS----------
T ss_pred -CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC----CeEEEEecchhhcc----------
Confidence 789999999998755667888999999999999999999999999999976 37999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.|+ .+ |+||+|+||+|+|++.........
T Consensus 123 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~--i~vn~v~PG~v~t~~~~~~~~~~~ 174 (223)
T 3uce_A 123 -------------------------VVANTYVKAAINAAIEATTKVLAKEL-AP--IRVNAISPGLTKTEAYKGMNADDR 174 (223)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TT--SEEEEEEECSBCSGGGTTSCHHHH
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHhh-cC--cEEEEEEeCCCcchhhhhcchhhH
Confidence 44677899999999999999999999 33 999999999999985543222111
Q ss_pred h-hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 R-LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~-~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. .........+.+++.+|+|+|+.++|++++ .+++|+.|.+||.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~--~~~tG~~i~vdgG 219 (223)
T 3uce_A 175 DAMYQRTQSHLPVGKVGEASDIAMAYLFAIQN--SYMTGTVIDVDGG 219 (223)
T ss_dssp HHHHHHHHHHSTTCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTT
T ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHHccC--CCCCCcEEEecCC
Confidence 1 122234455678899999999999999984 5799999999985
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=299.19 Aligned_cols=259 Identities=13% Similarity=0.076 Sum_probs=204.0
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHH-cCCcEEEEeecChHHH------------HHHHHHhccCCCcEEEEEecCCCHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKA------------ERAAKSAGMAKENYTIMHLDLASLDS 150 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r~~~~~------------~~~~~~~~~~~~~~~~~~~Dvs~~~~ 150 (399)
-.+|++|||||++|||+++|+.|++ +|| +|++++|+.+.. +...+.+...+.++..+.+|++|+++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 4689999999999999999999999 997 888888764331 12233444556788999999999999
Q ss_pred HHHHHHHHHHcCCCccEEEecCcccC------------CCCCC---------------------CCCChhhhhHhhhchh
Q 015844 151 VRQFVDTFRRSGRPLDVLVCNAAVYL------------PTAKE---------------------PTFTAEGFELSVGTNH 197 (399)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~nAg~~~------------~~~~~---------------------~~~~~~~~~~~~~~N~ 197 (399)
++++++++.+.+|+||+||||||+.. ...++ .+.+.++|++++++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999741 12344 6789999999999999
Q ss_pred hHHH-HHHHHHHHH-HhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh--hh
Q 015844 198 LGHF-LLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 273 (399)
Q Consensus 198 ~g~~-~l~~~~~~~-l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 273 (399)
.+.| ++++++.+. |.+. +|+||++||+.+.. +.+.+ ..
T Consensus 204 ~~~~~~~~~~~~~~~m~~~---gG~IVniSSi~~~~-----------------------------------~~p~~~~~a 245 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAE---GAQTTAFTYLGEKI-----------------------------------THDIYWNGS 245 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEE---EEEEEEEECCCCGG-----------------------------------GTTTTTTSH
T ss_pred hhHHHHHHHHHHHHhhhhC---CcEEEEEeCchhhC-----------------------------------cCCCccchH
Confidence 9998 788887754 4443 48999999998875 23444 78
Q ss_pred HHHhHHHHHHHHHHHHHhhccCC-ceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcC
Q 015844 274 YKDSKVCNMLTMQEFHRRFHEET-GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 274 Y~~sK~a~~~~~~~la~~~~~~~-gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~ 352 (399)
|++||+++++|+++|+.|| ++. |||||+|+||.|.|++... .+........+ ..++++..+|||+++.+.||+++
T Consensus 246 Y~AaKaal~~ltrsLA~El-a~~~GIRVNaVaPG~i~T~~s~~--ip~~p~y~~~l-~~~mkr~G~~Ed~a~~i~~L~sd 321 (405)
T 3zu3_A 246 IGAAKKDLDQKVLAIRESL-AAHGGGDARVSVLKAVVSQASSA--IPMMPLYLSLL-FKVMKEKGTHEGCIEQVYSLYKD 321 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTTSCEEEEEECCCCCCHHHHT--STTHHHHHHHH-HHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CcccCeEEEEEEeCCCcCchhhc--CCCCcHHHHHH-HHHHhcCCCcHHHHHHHHHHHhc
Confidence 9999999999999999999 788 9999999999999985422 12111111122 22578899999999999999998
Q ss_pred CCCCCCceEEccCCCCcccccccCcccCCHHHHHH---HHHH
Q 015844 353 PSLTKSGVYWSWNKDSASFENQLSQEASDVEKARK---VWEI 391 (399)
Q Consensus 353 ~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~---lw~~ 391 (399)
++.|..+.+|+.. -.+.+++..+++.|++ +|+.
T Consensus 322 ---~l~~~~~~~D~~~---~~r~d~~e~~~~~q~~~~~~~~~ 357 (405)
T 3zu3_A 322 ---SLCGDSPHMDQEG---RLRADYKELDPEVQNQVQQLWDQ 357 (405)
T ss_dssp ---TTSSSCCCBCTTS---CEECCHHHHCHHHHHHHHHHHHH
T ss_pred ---cccCCCCCcCCCc---CCCCchhhcCHHHHHHHHHHHHH
Confidence 5677777778743 3577788888887754 4643
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=279.78 Aligned_cols=231 Identities=19% Similarity=0.229 Sum_probs=200.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCc------EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~------~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+|++|||||++|||++++++|+++|+. +|++++|+.+..+.+.+++...+.++.++.+|++|+++++++++++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 679999999999999999999999942 89999999888888777776666789999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++++ .++||++||..+..
T Consensus 82 ~~~g~id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~-------- 150 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGVG-RFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAATK-------- 150 (244)
T ss_dssp HHTSCCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS--------
T ss_pred HhCCCCCEEEEcCCcC-CcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEEecchhcC--------
Confidence 9999999999999986 445666789999999999999999999999999998764 47999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||++++.|++.++.++ .+.||++++|+||+|.|++... ...
T Consensus 151 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~ 201 (244)
T 2bd0_A 151 ---------------------------AFRHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGK-VDD 201 (244)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCC-CCS
T ss_pred ---------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEECCCccchhhhh-ccc
Confidence 34567899999999999999999998 5679999999999999986532 111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. . ..++.+|+|+|+.++++++++..+++|..+..++.
T Consensus 202 ~------~-----~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~~ 238 (244)
T 2bd0_A 202 E------M-----QALMMMPEDIAAPVVQAYLQPSRTVVEEIILRPTS 238 (244)
T ss_dssp T------T-----GGGSBCHHHHHHHHHHHHTSCTTEEEEEEEEEETT
T ss_pred c------c-----cccCCCHHHHHHHHHHHHhCCccccchheEEeccc
Confidence 0 0 12578999999999999999988999999888774
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=283.92 Aligned_cols=242 Identities=18% Similarity=0.181 Sum_probs=202.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|++|||||++|||++++++|+++|+ +|++++|+.+..+...+++.. .+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 999999998877776666543 3567899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++.+++|+.|++++++.++|.|.+.+ .++||++||..+..
T Consensus 83 ~~~~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 149 (248)
T 2pnf_A 83 VDGIDILVNNAGITR-DKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR--WGRIVNISSVVGFT---------- 149 (248)
T ss_dssp SSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT--CEEEEEECCHHHHH----------
T ss_pred cCCCCEEEECCCCCC-CCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhcC----------
Confidence 999999999999863 34566778999999999999999999999999998764 47999999987764
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||++.|++... ....
T Consensus 150 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~-~~~~- 201 (248)
T 2pnf_A 150 -------------------------GNVGQVNYSTTKAGLIGFTKSLAKEL-APRNVLVNAVAPGFIETDMTAV-LSEE- 201 (248)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGG-SCHH-
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeceecCchhhh-ccHH-
Confidence 23456789999999999999999998 5669999999999999985432 1111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.+++++++...+++|+.+.+||.
T Consensus 202 -~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 202 -IKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp -HHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHhcCCCCCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 011111223456788999999999999998777899999999874
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=282.29 Aligned_cols=223 Identities=18% Similarity=0.162 Sum_probs=181.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|.++++++++++.+ ..|
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~---~~d 74 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDS---IPS 74 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSS---CCS
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhh---cCC
Confidence 6899999999999999999999996 8999999998888777765 45788999999999999999887654 349
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.+++ ++||++||..+..
T Consensus 75 ~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~--------------- 135 (230)
T 3guy_A 75 TVVHSAGSG-YFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP---VNVVMIMSTAAQQ--------------- 135 (230)
T ss_dssp EEEECCCCC-CCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---CEEEEECCGGGTS---------------
T ss_pred EEEEeCCcC-CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEEEeecccCC---------------
Confidence 999999986 456677889999999999999999999999999998764 5999999998874
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 136 --------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~--------- 185 (230)
T 3guy_A 136 --------------------PKAQESTYCAVKWAVKGLIESVRLEL-KGKPMKIIAVYPGGMATEFWETSG--------- 185 (230)
T ss_dssp --------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEECCC------------------
T ss_pred --------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HhcCeEEEEEECCcccChHHHhcC---------
Confidence 34677899999999999999999999 677999999999999998543211
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhc-CCCCCCCceEEccCCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVS-DPSLTKSGVYWSWNKD 367 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~-~~~~~~~G~~~~~dg~ 367 (399)
...+.+++.+|+|+|+.++++++ +...+++|+.+..+..
T Consensus 186 --~~~~~~~~~~~~dvA~~i~~l~~~~~~~~itg~~~~~~~~ 225 (230)
T 3guy_A 186 --KSLDTSSFMSAEDAALMIHGALANIGNGYVSDITVNREGH 225 (230)
T ss_dssp ---------CCCHHHHHHHHHHHCCEETTEEEEEEEEEC---
T ss_pred --CCCCcccCCCHHHHHHHHHHHHhCcCCCCccceeecCCCC
Confidence 12235678899999999999988 4555799999987764
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=301.49 Aligned_cols=257 Identities=16% Similarity=0.075 Sum_probs=201.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHH-cCCcEEEEeecChHHHH------------HHHHHhccCCCcEEEEEecCCCHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAE------------RAAKSAGMAKENYTIMHLDLASLDSV 151 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~Dvs~~~~v 151 (399)
.+|++|||||++|||+++|+.|++ +|| +|++++|+.+..+ .+.+.+...|.++..+.+|++|++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 589999999999999999999999 997 8999988754322 22344555677899999999999999
Q ss_pred HHHHHHHHHcC-CCccEEEecCccc------------CCCCCC---------------------CCCChhhhhHhhhchh
Q 015844 152 RQFVDTFRRSG-RPLDVLVCNAAVY------------LPTAKE---------------------PTFTAEGFELSVGTNH 197 (399)
Q Consensus 152 ~~~~~~~~~~~-g~id~lv~nAg~~------------~~~~~~---------------------~~~~~~~~~~~~~~N~ 197 (399)
+++++.+.+.+ |+||+||||||+. ....++ .+++.++|++++++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 99999999999 9999999999972 112233 3579999999999999
Q ss_pred hHHH-HHHHHHHHH-HhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh--hh
Q 015844 198 LGHF-LLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 273 (399)
Q Consensus 198 ~g~~-~l~~~~~~~-l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 273 (399)
.+.| ++++.+.+. |.+. +|+||++||+++.. +.+.+ ..
T Consensus 219 ~~~~~~~~~a~~~~~m~~~---gG~IVniSSi~g~~-----------------------------------~~p~~~~~a 260 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLAD---GARSVAFSYIGTEI-----------------------------------TWPIYWHGA 260 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEE---EEEEEEEEECCCGG-----------------------------------GHHHHTSHH
T ss_pred hhHHHHHHHHHHHHHHhhC---CCEEEEEeCchhhc-----------------------------------cCCCccchH
Confidence 9998 788887764 4432 48999999998874 33555 89
Q ss_pred HHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 274 YKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 274 Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
|++||+|+.+|+++|+.|+ ++.|||||+|+||+|+|++... . +...... .....++++..+|||+|+.+.||+++.
T Consensus 261 Y~ASKaAl~~lTrsLA~El-a~~GIRVNaVaPG~i~T~~~~~-i-p~~~~~~-~~~~~~m~r~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 261 LGKAKVDLDRTAQRLNARL-AKHGGGANVAVLKSVVTQASAA-I-PVMPLYI-SMVYKIMKEKGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGG-S-THHHHHH-HHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh-CccCEEEEEEEcCCCcChhhhc-C-CCChHHH-HHHHhhhcCCcChHHHHHHHHHHhcch
Confidence 9999999999999999999 6789999999999999986532 2 2111111 122336889999999999999999885
Q ss_pred CCCCC-ceEEccCCCCcccccccCcccCCHHHHHHH
Q 015844 354 SLTKS-GVYWSWNKDSASFENQLSQEASDVEKARKV 388 (399)
Q Consensus 354 ~~~~~-G~~~~~dg~~~~~~~~~~~~~~~~~~~~~l 388 (399)
- |.+ |+...+|+.. -.+++++..+++.|+++
T Consensus 337 l-y~~~~~~~~~d~~~---~~r~d~~e~~~~~q~~~ 368 (422)
T 3s8m_A 337 L-YRQDGQPAEVDEQN---RLRLDDWELRDDVQDAC 368 (422)
T ss_dssp T-TCTTCCCCCCCTTS---CEESCTTTTSHHHHHHH
T ss_pred h-hccCCCCcccCCCC---CCccchhhCCHHHHHHH
Confidence 3 554 6655466643 24777888888877544
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=283.10 Aligned_cols=240 Identities=21% Similarity=0.203 Sum_probs=200.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEE-EEecCCCHHHHHHHHHHHHHcCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTI-MHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~-~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+|++|||||++|||++++++|+++|+ +|+++ +|+.+..++..+++...+.++.. +.+|++|.++++++++++.+.++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999995 88887 89988877777766555566666 89999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++.+ .++||++||..+..
T Consensus 80 ~~d~li~~Ag~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~------------ 144 (245)
T 2ph3_A 80 GLDTLVNNAGIT-RDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR--FGRIVNITSVVGIL------------ 144 (245)
T ss_dssp CCCEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH------------
T ss_pred CCCEEEECCCCC-CCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC--CCEEEEEeChhhcc------------
Confidence 999999999986 345566788999999999999999999999999998764 47999999988764
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||++.|++... ..+. .
T Consensus 145 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~--~ 197 (245)
T 2ph3_A 145 -----------------------GNPGQANYVASKAGLIGFTRAVAKEY-AQRGITVNAVAPGFIETEMTER-LPQE--V 197 (245)
T ss_dssp -----------------------CCSSBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHT-SCHH--H
T ss_pred -----------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEEEeecCcchhh-cCHH--H
Confidence 23467789999999999999999998 5669999999999999985422 1111 1
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
........+.+++.+|+|+|+.++++++++..+++|+++.+||..
T Consensus 198 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 198 KEAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp HHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 111222334567889999999999999987778999999999853
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=286.71 Aligned_cols=246 Identities=21% Similarity=0.242 Sum_probs=202.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|++|||||+||||++++++|+++|+ +|++++|+ .+..+...+++...+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999995 99999998 77777777776655678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC---CCCceEEEEeccccccCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~---~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+.+ ...++||++||..+..
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------- 155 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHT------- 155 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHH-------
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhcc-------
Confidence 999999999999833445666788999999999999999999999999987542 1126999999987753
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.+.++...|++||++++.+++.++.++ .+.||++++|+||+|.|++... ..
T Consensus 156 ---------------------------~~~~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~ 206 (258)
T 3afn_B 156 ---------------------------GGGPGAGLYGAAKAFLHNVHKNWVDFH-TKDGVRFNIVSPGTVDTAFHAD-KT 206 (258)
T ss_dssp ---------------------------CCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSGGGTT-CC
T ss_pred ---------------------------CCCCCchHHHHHHHHHHHHHHHHHHhh-cccCeEEEEEeCCCcccccccc-cC
Confidence 023467789999999999999999998 5669999999999999985432 11
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC-CCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL-TKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~-~~~G~~~~~dg~ 367 (399)
+. .........+.+++.+|+|+|+.++++++++.. +++|+++.+||.
T Consensus 207 ~~--~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg 254 (258)
T 3afn_B 207 QD--VRDRISNGIPMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGG 254 (258)
T ss_dssp HH--HHHHHHTTCTTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTT
T ss_pred HH--HHHHHhccCCCCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCC
Confidence 11 111111223456788999999999999988766 789999999985
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=317.23 Aligned_cols=253 Identities=19% Similarity=0.164 Sum_probs=200.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++.+|+. ++++.+++...+.++..+.+|++ ++++++++++.++
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~--~~~~~~~~~~~~~ 392 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGA-KVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVA--KDSEAIIKNVIDK 392 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSC--CHHHHHHHHHTTCEEEEECCCHH--HHHHHHHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCC-EEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChH--HHHHHHHHHHHHh
Confidence 368899999999999999999999999996 898888642 23444555445667777888884 5567888888889
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ...++.+++.++|+++|++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 393 ~G~iDiLVnNAGi~-~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~ag~~---------- 459 (604)
T 2et6_A 393 YGTIDILVNNAGIL-RDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ--FGRIINITSTSGIY---------- 459 (604)
T ss_dssp HSCCCEEEECCCCC-CCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCHHHHS----------
T ss_pred cCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhcc----------
Confidence 99999999999986 446788899999999999999999999999999998765 58999999999875
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+++..|++||+|+.+|+++|+.|+ +++||+||+|+||. +|+|..... +
T Consensus 460 -------------------------~~~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~PG~-~T~m~~~~~-~-- 509 (604)
T 2et6_A 460 -------------------------GNFGQANYSSSKAGILGLSKTMAIEG-AKNNIKVNIVAPHA-ETAMTLSIM-R-- 509 (604)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECC-CCCC---------
T ss_pred -------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-CccCeEEEEEcCCC-CCccccccC-c--
Confidence 33577899999999999999999999 67799999999995 898543211 1
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccc-------cccCcccCCHHHHHHHHHHH
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE-------NQLSQEASDVEKARKVWEIS 392 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~-------~~~~~~~~~~~~~~~lw~~~ 392 (399)
.. .....+|+|+|..++||+++.+. +||++|.+||...... ........+++.-.+.|+..
T Consensus 510 ~~---------~~~~~~pe~vA~~v~~L~s~~~~-itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 577 (604)
T 2et6_A 510 EQ---------DKNLYHADQVAPLLVYLGTDDVP-VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEI 577 (604)
T ss_dssp ------------CCSSCGGGTHHHHHHTTSTTCC-CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHH
T ss_pred hh---------hccCCCHHHHHHHHHHHhCCccC-CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHH
Confidence 00 12346999999999999999888 9999999998532100 01122335666666777654
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=318.78 Aligned_cols=228 Identities=16% Similarity=0.179 Sum_probs=191.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---------HHHHHHHHHhccCCCcEEEEEecCCCHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 153 (399)
++++|++|||||++|||+++|+.|+++|+ +|++.+|+. +.++++.+++...+.++ .+|++|.+++++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~---~~d~~d~~~~~~ 80 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA---VADYNNVLDGDK 80 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEE---EEECCCTTCHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeE---EEEcCCHHHHHH
Confidence 57899999999999999999999999996 899987754 55666667775555443 368888888999
Q ss_pred HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
+++++.+.+|+||+||||||+. ...++.+++.++|+++|++|+.|+|+++++++|+|++++ .|+|||+||.++..
T Consensus 81 ~v~~~~~~~G~iDiLVnNAGi~-~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~--~G~IVnisS~ag~~-- 155 (604)
T 2et6_A 81 IVETAVKNFGTVHVIINNAGIL-RDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YGRIVNTSSPAGLY-- 155 (604)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC-CCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH--
T ss_pred HHHHHHHHcCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCHHHcC--
Confidence 9999999999999999999986 446778899999999999999999999999999998865 58999999999875
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.+++..|++||+|+.+|+++|+.|+ ++.||+||+|+|| ++|+|.
T Consensus 156 ---------------------------------~~~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~Pg-~~T~m~ 200 (604)
T 2et6_A 156 ---------------------------------GNFGQANYASAKSALLGFAETLAKEG-AKYNIKANAIAPL-ARSRMT 200 (604)
T ss_dssp ---------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-CCCHHH
T ss_pred ---------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEccC-CcCccc
Confidence 33577899999999999999999999 6779999999998 678643
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ..+ .. .....+|||+|..++||+++. .++||+++.+||.
T Consensus 201 ~~-~~~------~~-----~~~~~~pe~vA~~v~~L~s~~-~~itG~~~~vdgG 241 (604)
T 2et6_A 201 ES-IMP------PP-----MLEKLGPEKVAPLVLYLSSAE-NELTGQFFEVAAG 241 (604)
T ss_dssp HT-TSC------HH-----HHTTCSHHHHHHHHHHHTSSS-CCCCSCEEEEETT
T ss_pred cc-cCC------hh-----hhccCCHHHHHHHHHHHhCCc-ccCCCCEEEECCC
Confidence 21 111 00 112469999999999999998 7899999999985
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=284.04 Aligned_cols=229 Identities=19% Similarity=0.183 Sum_probs=188.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.+|++|.++++++++++.+.+
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAY---PDRAEAISLDVTDGERIDVVAADVLARY 77 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999995 9999999988777766554 4578999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||..+..
T Consensus 78 g~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~----------- 143 (281)
T 3m1a_A 78 GRVDVLVNNAGRT-QVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVVNISSFGGQL----------- 143 (281)
T ss_dssp SCCSEEEECCCCE-EECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC-----------
T ss_pred CCCCEEEECCCcC-CCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEEcCccccC-----------
Confidence 9999999999986 345677889999999999999999999999999998865 48999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc----
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 318 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~---- 318 (399)
+.++...|++||++++.|++.++.++ .+.||+||+|+||+|+|+++.....
T Consensus 144 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 198 (281)
T 3m1a_A 144 ------------------------SFAGFSAYSATKAALEQLSEGLADEV-APFGIKVLIVEPGAFRTNLFGKGAAYFSE 198 (281)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTCCCCEEECC
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCccccccccccccccCC
Confidence 44677899999999999999999999 5679999999999999986542211
Q ss_pred --h-hhhhh---chhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 319 --P-LFRLL---FPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 319 --~-~~~~~---~~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
+ +.... .......+.+++.+|+|+|+++++++.++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~~ 240 (281)
T 3m1a_A 199 ENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTEK 240 (281)
T ss_dssp BCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHHHHSSS
T ss_pred cchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCC
Confidence 1 10111 111222344567899999999999998864
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=282.11 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=197.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC--CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++...+ .++.++.+|++|+++++++++++.
T Consensus 28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 28 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 358899999999999999999999999995 99999999888877777665443 468889999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.++++|+||||||+.. ..++.+.+.++|++++++|+.+++++++.+++.|++.+.++|+||++||..+...
T Consensus 107 ~~~g~iD~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~------- 178 (279)
T 1xg5_A 107 SQHSGVDICINNAGLAR-PDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------- 178 (279)
T ss_dssp HHHCCCSEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-------
T ss_pred HhCCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc-------
Confidence 99999999999999863 4566678999999999999999999999999999876522379999999887620
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-CCceEEEEeeCCcccCCCCccccc
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.+.++...|++||++++.|++.++.++.. ..||++++|+||+|+|++......
T Consensus 179 --------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~ 232 (279)
T 1xg5_A 179 --------------------------LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHD 232 (279)
T ss_dssp --------------------------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTT
T ss_pred --------------------------CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcc
Confidence 13457789999999999999999999831 679999999999999985322111
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
.... ......+..++.+|+|+|+.++++++++..+.+|.+..
T Consensus 233 ~~~~---~~~~~~~~~~~~~~~dvA~~i~~l~~~~~~~~~g~i~i 274 (279)
T 1xg5_A 233 KDPE---KAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQIGDIQM 274 (279)
T ss_dssp TCHH---HHHHHHC---CBCHHHHHHHHHHHHHSCTTEEEEEEEE
T ss_pred cChh---HHhhhcccccCCCHHHHHHHHHHHhcCCcceEeeeEEE
Confidence 1000 11122234467899999999999999988777776654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=278.14 Aligned_cols=238 Identities=18% Similarity=0.182 Sum_probs=194.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|++|||||++|||+++++.|+++|+ +|++++|+.++.+++.+++. .+.++.+|++|+++++++++ .
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~----~ 73 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALG----S 73 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHT----T
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC----CCCEEEEeCCCHHHHHHHHH----H
Confidence 357899999999999999999999999995 99999999877776665542 34567999999999988876 5
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++++|+||||||+.. ..++.+.+.++|++++++|+.+++++++++.+.|.+++. .|+||++||..+..
T Consensus 74 ~~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 141 (244)
T 3d3w_A 74 VGPVDLLVNNAAVAL-LQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQR---------- 141 (244)
T ss_dssp CCCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCccCC-CcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEeCchhhcc----------
Confidence 678999999999863 345667789999999999999999999999999987531 37999999988763
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||+|.|++....... .
T Consensus 142 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~-~ 194 (244)
T 3d3w_A 142 -------------------------AVTNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSD-P 194 (244)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTTTHHHHSCS-T
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccccccchhhhccC-h
Confidence 33567899999999999999999998 56699999999999999853221111 0
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.+++.+|+|+|+.+++++++...+++|+.+.+||.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 3d3w_A 195 HKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp THHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 1111122334567789999999999999998777899999999884
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-37 Score=289.06 Aligned_cols=236 Identities=15% Similarity=0.183 Sum_probs=187.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCC--cEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+. ++.++.+|++|.++++++++.+.
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999995 999999999988888877755444 79999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhC----CCCCceEEEEeccccccCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS----DYPSKRLIIVGSITGNTNTLA 235 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~----~~~~g~iV~vSS~~~~~~~~~ 235 (399)
+.++++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.++ ..+.|+||++||.++..
T Consensus 83 ~~~g~id~lv~nAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~---- 157 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVN-LFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL---- 157 (319)
T ss_dssp HHTCCEEEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC----
T ss_pred HhCCCCCEEEECCCcC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc----
Confidence 9999999999999986 44677788999999999999999999999999999864 11258999999999875
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc
Q 015844 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~ 315 (399)
+.++...|++||+|+++|++.++.++ .+.||+|++|+||+|+|++...
T Consensus 158 -------------------------------~~~~~~~Y~aSKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 205 (319)
T 3ioy_A 158 -------------------------------AAGSPGIYNTTKFAVRGLSESLHYSL-LKYEIGVSVLCPGLVKSYIYAS 205 (319)
T ss_dssp -------------------------------CCSSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCCBC------
T ss_pred -------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEcCeEccCcccc
Confidence 34667899999999999999999999 5669999999999999986543
Q ss_pred ccchhhh--hhchh-----hHHH--HhcCCCChHHHHHHHHHhhcCCCC
Q 015844 316 EHIPLFR--LLFPP-----FQKY--ITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 316 ~~~~~~~--~~~~~-----~~~~--~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
....... ..... .... ......+|+++|+.++..+..+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~~ 254 (319)
T 3ioy_A 206 DDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKANRL 254 (319)
T ss_dssp -----------------------CCGGGSSBCHHHHHHHHHHHHHTTCS
T ss_pred cccCchhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCCC
Confidence 2111000 00000 0000 001126999999999999877654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=284.58 Aligned_cols=245 Identities=18% Similarity=0.191 Sum_probs=201.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++|++|||||+||||++++++|+++|+ +|++++| +.+..++..+++...+.++.++.+|++|+++++++++++.+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 8999998 77777777777765667889999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++++++.|++ +++||++||..+...
T Consensus 96 ~~~~~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~iv~~sS~~~~~~-------- 162 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEV-WCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR----GGRIILTSSIAAVMT-------- 162 (274)
T ss_dssp HHSCEEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE----EEEEEEECCGGGTCC--------
T ss_pred HcCCCCEEEECCCCCC-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCEEEEEcChHhccC--------
Confidence 9999999999999863 445667899999999999999999999999999873 269999999887620
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc---
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--- 317 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--- 317 (399)
+.++...|++||++++.+++.++.++ ...||++++|+||.+.|++.....
T Consensus 163 --------------------------~~~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 215 (274)
T 1ja9_A 163 --------------------------GIPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFDENSWHY 215 (274)
T ss_dssp --------------------------SCCSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGT
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccccchhcccccc
Confidence 23466789999999999999999998 566999999999999997543100
Q ss_pred -------chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 -------IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 -------~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+............+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 216 APGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp STTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 00001111111223456788999999999999998877899999999874
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=280.93 Aligned_cols=230 Identities=16% Similarity=0.186 Sum_probs=185.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
...+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..+ ++ + ++.++ +|+ .++++++++++
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~----~~---~-~~~~~-~D~--~~~~~~~~~~~-- 79 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK----RS---G-HRYVV-CDL--RKDLDLLFEKV-- 79 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH----HT---C-SEEEE-CCT--TTCHHHHHHHS--
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH----hh---C-CeEEE-eeH--HHHHHHHHHHh--
Confidence 3478899999999999999999999999995 9999999873322 22 2 56677 999 45677776654
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|++++ .|+||++||..+..
T Consensus 80 --~~iD~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 145 (249)
T 1o5i_A 80 --KEVDILVLNAGGP-KAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVIS--------- 145 (249)
T ss_dssp --CCCSEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred --cCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchHhcC---------
Confidence 3799999999986 345666789999999999999999999999999998765 47999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++... ..+.
T Consensus 146 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~ 197 (249)
T 1o5i_A 146 --------------------------PIENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKE-LLSE 197 (249)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHH-HSCH
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCccCcccc-cchh
Confidence 34567899999999999999999999 5679999999999999985422 1110
Q ss_pred hhhhc-hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 321 FRLLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 321 ~~~~~-~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
... ......+.+++.+|+|+|+.++||++++..+++|+++.+||..
T Consensus 198 --~~~~~~~~~~p~~~~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 198 --EKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp --HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --hHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 000 1112345577889999999999999988888999999999853
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=278.80 Aligned_cols=235 Identities=21% Similarity=0.273 Sum_probs=187.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
|++|++|||||++|||++++++|+++|+ ++|++++|+.+..+.+.+ + .+.++.++.+|++|+++++++++++.+.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~-~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS-I--KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT-C--CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh-c--cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999993 399999999876655432 2 35678999999999999999999999988
Q ss_pred C--CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhC------CC---CCceEEEEecccccc
Q 015844 163 R--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS------DY---PSKRLIIVGSITGNT 231 (399)
Q Consensus 163 g--~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~------~~---~~g~iV~vSS~~~~~ 231 (399)
+ ++|+||||||+..+..++.+.+.++|++++++|+.+++++++++++.|.++ +. +.++||++||..+..
T Consensus 78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 157 (250)
T 1yo6_A 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence 8 899999999987535667788999999999999999999999999998764 20 037999999998764
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
+... .....++...|++||++++.|++.++.++ .+.||+|++|+||+|+|+
T Consensus 158 ~~~~----------------------------~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~ 208 (250)
T 1yo6_A 158 TDNT----------------------------SGSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp TTCC----------------------------STTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC---
T ss_pred CCcc----------------------------cccccCCccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEcCCceecC
Confidence 2100 00011456789999999999999999999 566999999999999998
Q ss_pred CCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
+... ....+|+|+|+.+++++++...+++|+|+.+||..
T Consensus 209 ~~~~------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~ 247 (250)
T 1yo6_A 209 LGGK------------------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKP 247 (250)
T ss_dssp ----------------------------HHHHHHHHHHHTTCCGGGTTCEEETTEEE
T ss_pred CCCC------------------CCCCCHHHHHHHHHHHHhcccccCCCeEEEECCcC
Confidence 5421 13569999999999999998878999999999853
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=315.02 Aligned_cols=261 Identities=16% Similarity=0.156 Sum_probs=193.9
Q ss_pred CcCccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec---------ChHHHHHHHHHhccCCCcEEEEEecCCCH
Q 015844 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR---------DFLKAERAAKSAGMAKENYTIMHLDLASL 148 (399)
Q Consensus 78 ~~~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~ 148 (399)
+...++++||++|||||++|||+++|+.|+++|+ +|++++| +.+.++...+++...+..+ .+|++|.
T Consensus 11 ~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~D~~d~ 86 (613)
T 3oml_A 11 SDGKLRYDGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEA---VADYNSV 86 (613)
T ss_dssp ----CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCE---EECCCCG
T ss_pred cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeE---EEEeCCH
Confidence 3345689999999999999999999999999996 9999887 6666777777776555543 4899999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
++++++++++.+.+++||+||||||+. ...++.+++.++|++++++|+.|+++++++++|+|++++ .|+||++||.+
T Consensus 87 ~~~~~~~~~~~~~~g~iDiLVnnAGi~-~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~--~g~IV~isS~a 163 (613)
T 3oml_A 87 IDGAKVIETAIKAFGRVDILVNNAGIL-RDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN--YGRIIMTSSNS 163 (613)
T ss_dssp GGHHHHHC----------CEECCCCCC-CCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEECCHH
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCCC-CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEECCHH
Confidence 999999999999999999999999997 446777899999999999999999999999999999875 58999999999
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
+.. +.++...|++||+|+++|++.|+.|+ ++.||+||+|+||.+
T Consensus 164 ~~~-----------------------------------~~~~~~~Y~asKaal~~lt~~la~e~-~~~gI~vn~v~Pg~~ 207 (613)
T 3oml_A 164 GIY-----------------------------------GNFGQVNYTAAKMGLIGLANTVAIEG-ARNNVLCNVIVPTAA 207 (613)
T ss_dssp HHH-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC--
T ss_pred HcC-----------------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEECCCC
Confidence 875 33577899999999999999999999 667999999999986
Q ss_pred cCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccc---------cccC-cc
Q 015844 309 ATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE---------NQLS-QE 378 (399)
Q Consensus 309 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~---------~~~~-~~ 378 (399)
|++....... ......+|+|+|+.++||+++. .+++|+++.+||...... .... ..
T Consensus 208 -t~~~~~~~~~------------~~~~~~~pedvA~~v~~L~s~~-~~~tG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~ 273 (613)
T 3oml_A 208 -SRMTEGILPD------------ILFNELKPKLIAPVVAYLCHES-CEDNGSYIESAAGWATKLHMVRGKGAVLRPSLDD 273 (613)
T ss_dssp -----CCCCCH------------HHHTTCCGGGTHHHHHHTTSTT-CCCCSCEEEEETTEEEEECCCBCCCCCSSSSTTS
T ss_pred -Chhhhhccch------------hhhhcCCHHHHHHHHHHhcCCC-cCCCceEEEECCCeEEEEEEEecCCEEecCcccc
Confidence 5554332111 0123469999999999999998 789999999887422211 0111 23
Q ss_pred cCCHHHHHHHHHHHHHH
Q 015844 379 ASDVEKARKVWEISEKL 395 (399)
Q Consensus 379 ~~~~~~~~~lw~~~~~~ 395 (399)
..+.+..++.|+...+.
T Consensus 274 ~~~~e~~~~~w~~i~~~ 290 (613)
T 3oml_A 274 PVTIEYVKDVWSNVTDM 290 (613)
T ss_dssp CCCHHHHHHTHHHHTCC
T ss_pred CCCHHHHHHHHHHhhcc
Confidence 45778888889876543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=278.38 Aligned_cols=237 Identities=17% Similarity=0.176 Sum_probs=190.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++|++|||||++|||+++++.|+++|+ +|++++|+.+..++..+++... +.++.++.+|++|+++++++++.+.+.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999995 9999999988777766666442 457889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++++|+||||||+. +.++|++++++|+.|++++++.++|.|++.+. +.|+||++||..+..
T Consensus 84 ~g~id~lv~~Ag~~---------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 145 (267)
T 2gdz_A 84 FGRLDILVNNAGVN---------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------- 145 (267)
T ss_dssp HSCCCEEEECCCCC---------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------
T ss_pred cCCCCEEEECCCCC---------ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC---------
Confidence 99999999999974 24679999999999999999999999987531 147999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHH--HHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF--HRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~l--a~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.+ +.++ .+.||+||+|+||+|+|++......
T Consensus 146 --------------------------~~~~~~~Y~~sK~a~~~~~~~~ala~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~ 198 (267)
T 2gdz_A 146 --------------------------PVAQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEK 198 (267)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHGGGC
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEEEecCcCcchhhhcccc
Confidence 3356778999999999999995 5777 5679999999999999985322111
Q ss_pred hh-hhhh---chhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 319 PL-FRLL---FPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 ~~-~~~~---~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.. .... ...+ ...+..++++|+|+|+.++|+++++ .++|+.+.+++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~--~~~G~~~~v~gg~ 251 (267)
T 2gdz_A 199 EENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDD--ALNGAIMKITTSK 251 (267)
T ss_dssp HHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCT--TCSSCEEEEETTT
T ss_pred ccccchhhhHHHHHHHHhccccCCCHHHHHHHHHHHhcCc--CCCCcEEEecCCC
Confidence 10 0000 0111 1122234679999999999999986 4899999988754
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=287.44 Aligned_cols=191 Identities=26% Similarity=0.297 Sum_probs=163.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-----hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.|++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.++.+.+.+...+.++.++.+|++|++++++++++
T Consensus 2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 2 VMSKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 56789999999999999999999999995 99987765 4555666665555567899999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+.+++|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..+
T Consensus 81 ~~~~~g~iD~lVnnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~--~g~iV~isS~~~~~~----- 152 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHM-VFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK--HGLLIWISSSSSAGG----- 152 (324)
T ss_dssp HHHHHSCCSEEEECCCCC-BCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC-----
T ss_pred HHHHcCCCCEEEECCCcC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEecchhccC-----
Confidence 999999999999999986 446777889999999999999999999999999998875 589999999987631
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
..++...|++||+|+++|+++++.|+ ++.||+|++|+||+|.|++
T Consensus 153 -----------------------------~~~~~~~Y~asKaa~~~~~~~la~el-~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 -----------------------------TPPYLAPYFAAKAAMDAIAVQYAREL-SRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp -----------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCC----
T ss_pred -----------------------------CCCcchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEECCccccCc
Confidence 23456789999999999999999999 6779999999999999764
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=270.89 Aligned_cols=224 Identities=23% Similarity=0.242 Sum_probs=184.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+|++|||||+||||++++++|+++|+ +|++++|+.+..++..+++. ++.++.+|++|.++++++++++.+.+++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELE----GALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----hceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999995 99999999887777666552 5788999999999999999999998999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+. ...++.+.+.++|++++++|+.|++++++.+++.|++.+ .++||++||..+..
T Consensus 79 id~li~~Ag~~-~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~------------- 142 (234)
T 2ehd_A 79 LSALVNNAGVG-VMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG--GGTIVNVGSLAGKN------------- 142 (234)
T ss_dssp CCEEEECCCCC-CCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCTTTTS-------------
T ss_pred CCEEEECCCcC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEECCchhcC-------------
Confidence 99999999986 345666789999999999999999999999999998765 48999999988763
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||+|+|++... . + .
T Consensus 143 ----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~-~--~-- 193 (234)
T 2ehd_A 143 ----------------------PFKGGAAYNASKFGLLGLAGAAMLDL-REANVRVVNVLPGSVDTGFAGN-T-P--G-- 193 (234)
T ss_dssp ----------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEECC------------------
T ss_pred ----------------------CCCCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCcccc-c-c--c--
Confidence 33567899999999999999999998 5669999999999999985421 1 1 0
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.+ ...+|+|+|+.++++++++..+++|+.+..++
T Consensus 194 --~~------~~~~~~dvA~~~~~l~~~~~~~~~g~~~~~~~ 227 (234)
T 2ehd_A 194 --QA------WKLKPEDVAQAVLFALEMPGHAMVSEIELRPT 227 (234)
T ss_dssp ------------CCHHHHHHHHHHHHHSCCSSCCCEEECCC-
T ss_pred --cc------CCCCHHHHHHHHHHHhCCCcccccceEEEeec
Confidence 01 14699999999999999998889999876655
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=281.24 Aligned_cols=222 Identities=12% Similarity=0.140 Sum_probs=187.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
...+|++|||||++|||+++|++|+++|+ +|++++|+.++.+ ...+.+|++|.++++++++++.+.+
T Consensus 19 ~~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~------------~~~~~~d~~d~~~v~~~~~~~~~~~ 85 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNA------------DHSFTIKDSGEEEIKSVIEKINSKS 85 (251)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTS------------SEEEECSCSSHHHHHHHHHHHHTTT
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc------------ccceEEEeCCHHHHHHHHHHHHHHc
Confidence 44579999999999999999999999995 8999999865321 1357899999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+......+.+.+.++|++++++|+.|+++++++++|.|++ +|+||++||..+..
T Consensus 86 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~----------- 150 (251)
T 3orf_A 86 IKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ----GGLFVLTGASAALN----------- 150 (251)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc----CCEEEEEechhhcc-----------
Confidence 999999999998755444667789999999999999999999999999976 36999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCccccchhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||++++.|++.++.++. .+.||+||+|+||+|+|++... ..+
T Consensus 151 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~-~~~-- 203 (251)
T 3orf_A 151 ------------------------RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRK-YMS-- 203 (251)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHH-HCT--
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhh-hcc--
Confidence 446788999999999999999999972 2679999999999999974321 111
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcC-CCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~-~~~~~~G~~~~~dg~ 367 (399)
..+.+++.+|+|+|+.+++++++ ...+++|+.+.+++.
T Consensus 204 --------~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g 242 (251)
T 3orf_A 204 --------DANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETK 242 (251)
T ss_dssp --------TSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEE
T ss_pred --------cccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecC
Confidence 11245678999999999999999 777899999988664
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=296.33 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=163.2
Q ss_pred cccCCCEEEEEcC--CChHHHHHHHHHHHcCCcEEEEeecCh-----------HHHH-----------HHHHHhccCCCc
Q 015844 82 KTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDF-----------LKAE-----------RAAKSAGMAKEN 137 (399)
Q Consensus 82 ~~l~~k~~lVTG~--s~gIG~aia~~l~~~Ga~~vv~~~r~~-----------~~~~-----------~~~~~~~~~~~~ 137 (399)
+++++|++||||| ++|||+++|+.|+++|+ +|++++|+. ++++ ++.+++...+..
T Consensus 5 ~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2ptg_A 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGA-RVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVD 83 (319)
T ss_dssp CCCTTCEEEEECCCCTTSHHHHHHHHHHHTTC-EEEEEECHHHHHHHHC-------------------------------
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccc
Confidence 3578999999999 89999999999999996 899988652 1111 122223222211
Q ss_pred ---EEEEEec------------CCC--------HHHHHHHHHHHHHcCCCccEEEecCcccC-CCCCCCCCChhhhhHhh
Q 015844 138 ---YTIMHLD------------LAS--------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSV 193 (399)
Q Consensus 138 ---~~~~~~D------------vs~--------~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~ 193 (399)
..++.+| ++| +++++++++++.+.++++|+||||||+.. ...++.+.+.++|+++|
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~ 163 (319)
T 2ptg_A 84 LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAV 163 (319)
T ss_dssp -CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHH
T ss_pred ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHH
Confidence 2344443 333 45899999999999999999999999753 23566788999999999
Q ss_pred hchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh-h
Q 015844 194 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-K 272 (399)
Q Consensus 194 ~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 272 (399)
++|+.|+++++++++|+|++. |+||++||.++.. +.++. .
T Consensus 164 ~vN~~g~~~l~~~~~~~m~~~----g~Iv~isS~~~~~-----------------------------------~~~~~~~ 204 (319)
T 2ptg_A 164 SSSSYSFVSLLQHFLPLMKEG----GSALALSYIASEK-----------------------------------VIPGYGG 204 (319)
T ss_dssp HHHTHHHHHHHHHHGGGEEEE----EEEEEEEECC---------------------------------------------
T ss_pred hHhhHHHHHHHHHHHHHHhcC----ceEEEEecccccc-----------------------------------ccCccch
Confidence 999999999999999999762 7999999998764 23455 5
Q ss_pred hHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---h-hhhhh-chhhHHHHhcCCCChHHHHHHHH
Q 015844 273 AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---P-LFRLL-FPPFQKYITKGYVSEDEAGKRLA 347 (399)
Q Consensus 273 ~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~pee~a~~v~ 347 (399)
.|++||+|+++|++.|+.|+..+.||+||+|+||+|+|++...... + ..... .......+.+++.+|+|+|+.++
T Consensus 205 ~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~ 284 (319)
T 2ptg_A 205 GMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAAL 284 (319)
T ss_dssp --------THHHHHHHHHHHHHHHCCEEEEEEECCCC-------------------------------CCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHH
Confidence 8999999999999999999832269999999999999986432110 0 00001 01122356678899999999999
Q ss_pred HhhcCCCCCCCceEEccCCCC
Q 015844 348 QVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 348 ~l~~~~~~~~~G~~~~~dg~~ 368 (399)
||+++.+.++||++|.+||..
T Consensus 285 ~L~s~~~~~itG~~i~vdGG~ 305 (319)
T 2ptg_A 285 FLLSPLARAVTGATLYVDNGL 305 (319)
T ss_dssp HHTSGGGTTCCSCEEEESTTC
T ss_pred HHhCcccCCccCCEEEECCCc
Confidence 999998889999999999963
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=284.88 Aligned_cols=258 Identities=21% Similarity=0.305 Sum_probs=192.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCCCH-HHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASL-DSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~-~~v~~~~~~~~~ 160 (399)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++...+ .++.++.+|++|. ++++.+++.+.+
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 56799999999999999999999999996 99999999998888888876553 5799999999998 999999999999
Q ss_pred cCCCccEEEecCcccCCC-----------------------------CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHH
Q 015844 161 SGRPLDVLVCNAAVYLPT-----------------------------AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL 211 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~-----------------------------~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 211 (399)
.++++|+||||||+.... ..+.+.+.++|+++|++|+.|++++++.++|.|
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 999999999999986321 133456889999999999999999999999999
Q ss_pred hhCCCCCceEEEEeccccccCCCCCCC-------CCCCCccccccccCCC-CCCCCCCCCCCCCC-ChhhhHHHhHHHHH
Q 015844 212 KQSDYPSKRLIIVGSITGNTNTLAGNV-------PPKANLGDLRGFAGGL-NGLNSSSMIDGGDF-DGAKAYKDSKVCNM 282 (399)
Q Consensus 212 ~~~~~~~g~iV~vSS~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~ 282 (399)
++++ .|+||++||.++..+...... .........+.....+ ..+.. ...+..++ ++...|++||+|++
T Consensus 168 ~~~~--~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 168 QLSD--SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKE-NLIETNGWPSFGAAYTTSKACLN 244 (311)
T ss_dssp TTSS--SCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHT-TCTTTTTCCSSCHHHHHHHHHHH
T ss_pred ccCC--CCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhc-cccccccCcccchhhHHHHHHHH
Confidence 8765 579999999988753210000 0000000000000000 00000 00011122 45678999999999
Q ss_pred HHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 283 LTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 283 ~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
+|++.+++++ . +|+||+|+||+|+|++.... ...+|+++|+.+++++..+....+|.||
T Consensus 245 ~~~~~la~e~-~--~i~v~~v~PG~v~T~~~~~~------------------~~~~~~~~a~~~~~~~~~~~~~~~g~~~ 303 (311)
T 3o26_A 245 AYTRVLANKI-P--KFQVNCVCPGLVKTEMNYGI------------------GNYTAEEGAEHVVRIALFPDDGPSGFFY 303 (311)
T ss_dssp HHHHHHHHHC-T--TSEEEEECCCSBCSGGGTTC------------------CSBCHHHHHHHHHHHHTCCSSCCCSCEE
T ss_pred HHHHHHHhhc-C--CceEEEecCCceecCCcCCC------------------CCCCHHHHHHHHHHHHhCCCCCCCceEe
Confidence 9999999998 2 59999999999999854221 1358999999999999887766788888
Q ss_pred ccC
Q 015844 363 SWN 365 (399)
Q Consensus 363 ~~d 365 (399)
...
T Consensus 304 ~~s 306 (311)
T 3o26_A 304 DCS 306 (311)
T ss_dssp TC-
T ss_pred ccc
Confidence 654
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=279.43 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=194.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCC--cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
...+++|++|||||++|||+++|++|+++|+ ++|++++|+.+..+.+ +++...+.++.++.+|++|.++++++++++
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccCCceEEEEecCCChHHHHHHHHHH
Confidence 3468899999999999999999999999993 3999999987654433 233223567899999999999999999999
Q ss_pred HHcCC--CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhC------CC---CCceEEEEecc
Q 015844 159 RRSGR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS------DY---PSKRLIIVGSI 227 (399)
Q Consensus 159 ~~~~g--~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~------~~---~~g~iV~vSS~ 227 (399)
.+.++ ++|+||||||+.....++.+.+.++|++++++|+.+++++++++++.|.++ +. +.++||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 98888 899999999987534566678899999999999999999999999999865 10 03799999999
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCc
Q 015844 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (399)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~ 307 (399)
.+..+. .+.++...|++||++++.|++.++.++ .+.||+|++|+||+
T Consensus 175 ~~~~~~--------------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~ 221 (267)
T 1sny_A 175 LGSIQG--------------------------------NTDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGW 221 (267)
T ss_dssp GGCSTT--------------------------------CCSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCS
T ss_pred cccccC--------------------------------CCCCCchHHHHHHHHHHHHHHHHHHHh-hcCCcEEEEeCCcc
Confidence 886421 012356689999999999999999998 56699999999999
Q ss_pred ccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCc
Q 015844 308 IATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 369 (399)
Q Consensus 308 v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~ 369 (399)
|+|++... .+..+|+++|+.+++++.......+|.++.+||...
T Consensus 222 v~t~~~~~------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~ 265 (267)
T 1sny_A 222 VKTDMGGS------------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPL 265 (267)
T ss_dssp BCSTTTCT------------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBC
T ss_pred eecCCCCC------------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCc
Confidence 99985421 135799999999999999888889999999998643
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=281.62 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=187.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC-
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG- 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 162 (399)
.++|++|||||++|||+++|++|+++|+ +|++++|+.+..+ ....++.+|++|+++++++++++.+.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA----------SASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS----------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc----------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999999995 9999999865421 235678899999999999999999988
Q ss_pred -CCccEEEecCcccCCCCCC-CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 163 -RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 163 -g~id~lv~nAg~~~~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++|+||||||+.. ..++ .+.+.++|++++++|+.++++++++++|.|++ +|+||++||.++..
T Consensus 74 ~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~----~g~iv~isS~~~~~--------- 139 (241)
T 1dhr_A 74 DQKVDAILCVAGGWA-GGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE----GGLLTLAGAKAALD--------- 139 (241)
T ss_dssp TCCEEEEEECCCCCC-CBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGS---------
T ss_pred CCCCCEEEEcccccC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc----CCEEEEECCHHHcc---------
Confidence 79999999999864 3455 67788999999999999999999999999975 37999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc--CCceEEEEeeCCcccCCCCccccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.|+ + +.||+||+|+||+|+|++... ..
T Consensus 140 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~~~gi~v~~v~PG~v~T~~~~~-~~ 191 (241)
T 1dhr_A 140 --------------------------GTPGMIGYGMAKGAVHQLCQSLAGKN-SGMPSGAAAIAVLPVTLDTPMNRK-SM 191 (241)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHTSTT-SSCCTTCEEEEEEESCEECHHHHH-HS
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-ccCCCCeEEEEEecCcccCccccc-cC
Confidence 34577899999999999999999998 5 679999999999999984321 11
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCc
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 369 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~ 369 (399)
+. . ...+..+|+|+|+.+++++++...+++|+++.+||...
T Consensus 192 ~~-----~-----~~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~~~ 232 (241)
T 1dhr_A 192 PE-----A-----DFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTDG 232 (241)
T ss_dssp TT-----S-----CGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEETT
T ss_pred cc-----h-----hhccCCCHHHHHHHHHHHhcCCCcCccceEEEEeCCCC
Confidence 10 0 01235689999999999999988899999999988543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=273.65 Aligned_cols=237 Identities=19% Similarity=0.216 Sum_probs=193.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||+||||++++++|+++|+ +|++++|+.+..++..+++ ..+.++.+|++|.++++++++ .+
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~----~~ 74 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC----PGIEPVCVDLGDWDATEKALG----GI 74 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHT----TC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc----cCCCcEEecCCCHHHHHHHHH----Hc
Confidence 57899999999999999999999999995 9999999987776665543 235667999999999988876 56
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ..++.+.+.++|++++++|+.|++++++++.+.|.+++. .++||++||..+..
T Consensus 75 ~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~----------- 141 (244)
T 1cyd_A 75 GPVDLLVNNAALVI-MQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAHV----------- 141 (244)
T ss_dssp CCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCcccC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEEcchhhcC-----------
Confidence 78999999999863 345667889999999999999999999999999987531 37999999988764
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||++++.+++.++.++ ...||++++|+||.+.|++...... ...
T Consensus 142 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~~~~-~~~ 195 (244)
T 1cyd_A 142 ------------------------TFPNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSA-DPE 195 (244)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHHHTC-CHH
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCcccccccc-CHH
Confidence 33567889999999999999999998 5669999999999999974321111 111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........+.+++.+|+|+|+.++++++++..+++|+.+.+||.
T Consensus 196 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 1cyd_A 196 FARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240 (244)
T ss_dssp HHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred HHHHHHhcCCccCCCCHHHHHHHHHHHhCchhhcccCCEEEECCC
Confidence 111222334557789999999999999998888899999999884
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=285.11 Aligned_cols=244 Identities=16% Similarity=0.143 Sum_probs=186.8
Q ss_pred cccCCCEEEEEcCC--ChHHHHHHHHHHHcCCcEEEEeecChHHH-----------HHHHHHhccCC--CcEEEEEec--
Q 015844 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKA-----------ERAAKSAGMAK--ENYTIMHLD-- 144 (399)
Q Consensus 82 ~~l~~k~~lVTG~s--~gIG~aia~~l~~~Ga~~vv~~~r~~~~~-----------~~~~~~~~~~~--~~~~~~~~D-- 144 (399)
+++++|++|||||+ +|||+++|+.|+++|+ +|++++|+.... ++. +++...+ .....+.+|
T Consensus 4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (297)
T 1d7o_A 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTT
T ss_pred cccCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccccccee
Confidence 46789999999999 9999999999999996 899988763211 111 1111100 012344443
Q ss_pred ------CC----C--------HHHHHHHHHHHHHcCCCccEEEecCcccC-CCCCCCCCChhhhhHhhhchhhHHHHHHH
Q 015844 145 ------LA----S--------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (399)
Q Consensus 145 ------vs----~--------~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 205 (399)
++ | +++++++++++.+.++++|+||||||+.. ...++.+.+.++|++++++|+.|++++++
T Consensus 82 ~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 161 (297)
T 1d7o_A 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHH
Confidence 33 2 56899999999999999999999999753 23566678999999999999999999999
Q ss_pred HHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh-hhHHHhHHHHHHH
Q 015844 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 284 (399)
Q Consensus 206 ~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~ 284 (399)
+++|+|++ +|+||++||.++.. +.++. ..|++||+|+++|
T Consensus 162 ~~~~~m~~----~g~iv~isS~~~~~-----------------------------------~~~~~~~~Y~asKaa~~~~ 202 (297)
T 1d7o_A 162 HFLPIMNP----GGASISLTYIASER-----------------------------------IIPGYGGGMSSAKAALESD 202 (297)
T ss_dssp HHGGGEEE----EEEEEEEECGGGTS-----------------------------------CCTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcc----CceEEEEecccccc-----------------------------------CCCCcchHHHHHHHHHHHH
Confidence 99999975 27999999998864 23444 5899999999999
Q ss_pred HHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 285 ~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
++.++.|+..+.||+||+|+||+|+|++..... .............+.+++.+|+|+|+.++||+++...+++|+++.+
T Consensus 203 ~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i~v 281 (297)
T 1d7o_A 203 TRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIG-FIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYV 281 (297)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCS-HHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred HHHHHHHhCcccCcEEEEEeccccccchhhhcc-ccHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEE
Confidence 999999983226999999999999998653311 1111111122334567789999999999999998888999999999
Q ss_pred CCC
Q 015844 365 NKD 367 (399)
Q Consensus 365 dg~ 367 (399)
||.
T Consensus 282 dgG 284 (297)
T 1d7o_A 282 DNG 284 (297)
T ss_dssp STT
T ss_pred CCC
Confidence 985
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=292.98 Aligned_cols=245 Identities=13% Similarity=0.134 Sum_probs=187.4
Q ss_pred cccCCCEEEEEcC--CChHHHHHHHHHHHcCCcEEEEeecChH-----------HHHHHHHHhccCCCc---EEEEEec-
Q 015844 82 KTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFL-----------KAERAAKSAGMAKEN---YTIMHLD- 144 (399)
Q Consensus 82 ~~l~~k~~lVTG~--s~gIG~aia~~l~~~Ga~~vv~~~r~~~-----------~~~~~~~~~~~~~~~---~~~~~~D- 144 (399)
+++++|++||||| ++|||+++|+.|+++|+ +|++++|+.. .+++. +++.. +.. +.++.+|
T Consensus 5 ~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~d~ 81 (315)
T 2o2s_A 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGA-RVALGTWPPVLGLFQKSLQSGRLDED-RKLPD-GSLIEFAGVYPLDA 81 (315)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHTTTC-EEEEEECHHHHHHHHHHHHHTTTHHH-HBCTT-SCBCCCSCEEECCT
T ss_pred ccCCCCEEEEeCCCCCCChHHHHHHHHHHCCC-EEEEEecccccchhhhhhhhhhhhhh-hhhhc-cccccccccccccc
Confidence 3578999999999 89999999999999996 8999987641 11111 22211 111 2344444
Q ss_pred -----------CC--------CHHHHHHHHHHHHHcCCCccEEEecCcccC-CCCCCCCCChhhhhHhhhchhhHHHHHH
Q 015844 145 -----------LA--------SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLS 204 (399)
Q Consensus 145 -----------vs--------~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 204 (399)
++ |+++++++++++.+.+|++|+||||||+.. ...++.+.+.++|++++++|+.|+++++
T Consensus 82 ~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 161 (315)
T 2o2s_A 82 AFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLL 161 (315)
T ss_dssp TCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred cccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHH
Confidence 33 356899999999999999999999999753 2356668899999999999999999999
Q ss_pred HHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh-hhHHHhHHHHHH
Q 015844 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNML 283 (399)
Q Consensus 205 ~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~ 283 (399)
++++|+|++ +|+||++||.++.. +.++. ..|++||+|+++
T Consensus 162 ~~~~~~m~~----~g~Iv~isS~~~~~-----------------------------------~~~~~~~~Y~asKaal~~ 202 (315)
T 2o2s_A 162 QHFGPIMNE----GGSAVTLSYLAAER-----------------------------------VVPGYGGGMSSAKAALES 202 (315)
T ss_dssp HHHSTTEEE----EEEEEEEEEGGGTS-----------------------------------CCTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhc----CCEEEEEecccccc-----------------------------------cCCCccHHHHHHHHHHHH
Confidence 999999976 27999999998864 22344 479999999999
Q ss_pred HHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---h-hhhhhch-hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCC
Q 015844 284 TMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---P-LFRLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKS 358 (399)
Q Consensus 284 ~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~---~-~~~~~~~-~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~ 358 (399)
|++.++.|+..+.||+||+|+||+|+|++...... + ....... .....+.+++.+|+|+|+.++||+++.+.+++
T Consensus 203 l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~it 282 (315)
T 2o2s_A 203 DTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVS 282 (315)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCC
T ss_pred HHHHHHHHhCcccCeEEEEEecccccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCc
Confidence 99999999832369999999999999985321100 0 0011111 12234667889999999999999998888999
Q ss_pred ceEEccCCCC
Q 015844 359 GVYWSWNKDS 368 (399)
Q Consensus 359 G~~~~~dg~~ 368 (399)
|++|.+||..
T Consensus 283 G~~i~vdGG~ 292 (315)
T 2o2s_A 283 GVTLYVDNGL 292 (315)
T ss_dssp SCEEEESTTG
T ss_pred CCEEEECCCe
Confidence 9999999963
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=276.15 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=191.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++++.+
T Consensus 26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3468899999999999999999999999995 999999998888877777766667899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|++.+ .++||++||..+..
T Consensus 105 ~~g~iD~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------- 172 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVY-TSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAGHV--------- 172 (272)
T ss_dssp HTCCCSEEEECCCCCC-CCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-CC---------
T ss_pred HCCCCcEEEECCCcCC-CcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEechhhcC---------
Confidence 9999999999999863 45566778899999999999999999999999998765 47999999998764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc--CCceEEEEeeCCcccCCCCccccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.++.. +.||+|++|+||+|+|++....
T Consensus 173 --------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~-- 224 (272)
T 1yb1_A 173 --------------------------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-- 224 (272)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT--
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc--
Confidence 3467889999999999999999999831 5699999999999999853210
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
..+..++.+|+|+|+.+++++..+..
T Consensus 225 -----------~~~~~~~~~~~dva~~i~~~~~~~~~ 250 (272)
T 1yb1_A 225 -----------STSLGPTLEPEEVVNRLMHGILTEQK 250 (272)
T ss_dssp -----------HHHHCCCCCHHHHHHHHHHHHHTTCS
T ss_pred -----------cccccCCCCHHHHHHHHHHHHHcCCC
Confidence 12245678999999999999987644
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=274.95 Aligned_cols=233 Identities=17% Similarity=0.254 Sum_probs=183.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH--HHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~ 159 (399)
++++|++|||||++|||+++|++|+++|+.+|++++|+.. ..+++.+.. .+.++.++.+|++|+ ++++++++++.
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN--PKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC--TTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhC--CCceEEEEEEecCCChHHHHHHHHHHH
Confidence 5789999999999999999999999999634888998763 333333222 145788999999998 99999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+.++++|+||||||+. +.++|++++++|+.|+++++++++|.|.+++. +.|+||++||.++..
T Consensus 80 ~~~g~id~lv~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 143 (254)
T 1sby_A 80 DQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------- 143 (254)
T ss_dssp HHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------
T ss_pred HhcCCCCEEEECCccC---------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc-------
Confidence 9999999999999974 45789999999999999999999999976531 147999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.++ .+.||+|++|+||+|+|++... ..
T Consensus 144 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~-~~ 193 (254)
T 1sby_A 144 ----------------------------AIHQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVHT-FN 193 (254)
T ss_dssp ----------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHHS-CC
T ss_pred ----------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCCccCccccc-cc
Confidence 33567899999999999999999987 4469999999999999985432 11
Q ss_pred hhhhhhchhhHHHH-hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.... ....+.... ...+.+|+|+|+.++++++ .+.+|++|.+||.
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~dvA~~i~~~~~---~~~~G~~~~v~gG 239 (254)
T 1sby_A 194 SWLD-VEPRVAELLLSHPTQTSEQCGQNFVKAIE---ANKNGAIWKLDLG 239 (254)
T ss_dssp CGGG-SCTTHHHHHTTSCCEEHHHHHHHHHHHHH---HCCTTCEEEEETT
T ss_pred hhhh-hhHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCCCCEEEEeCC
Confidence 1000 001111111 1234589999999999986 3689999999884
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=277.39 Aligned_cols=222 Identities=13% Similarity=0.127 Sum_probs=184.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC-
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG- 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 162 (399)
|++|++|||||++|||+++|++|+++|+ +|++++|+.+..+ ....++.+|++|+++++++++++.+.+
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 69 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA----------DSNILVDGNKNWTEQEQSILEQTASSLQ 69 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS----------SEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc----------cccEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999995 9999999865421 235678899999999999999999988
Q ss_pred -CCccEEEecCcccCCCCCC-CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 163 -RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 163 -g~id~lv~nAg~~~~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++|+||||||+.. ..++ .+.+.++|++++++|+.|+++++++++|.|++ .|+||++||.++..
T Consensus 70 ~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~--------- 135 (236)
T 1ooe_A 70 GSQVDGVFCVAGGWA-GGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP----GGLLQLTGAAAAMG--------- 135 (236)
T ss_dssp TCCEEEEEECCCCCC-CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGS---------
T ss_pred CCCCCEEEECCcccC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEECchhhcc---------
Confidence 79999999999864 3455 57788999999999999999999999999975 36999999998874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc--CCceEEEEeeCCcccCCCCccccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.|+ . +.||+||+|+||+|+|++... ..
T Consensus 136 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~~-~~ 187 (236)
T 1ooe_A 136 --------------------------PTPSMIGYGMAKAAVHHLTSSLAAKD-SGLPDNSAVLTIMPVTLDTPMNRK-WM 187 (236)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHHSTT-SSCCTTCEEEEEEESCBCCHHHHH-HS
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-cccCCCeEEEEEecCcccCcchhh-cC
Confidence 34677899999999999999999998 5 679999999999999984321 10
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHH-HhhcCCCCCCCceEEccCCCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLA-QVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~-~l~~~~~~~~~G~~~~~dg~~ 368 (399)
+. . ...+..+|+|+|+.++ +++++...+++|+++.+||..
T Consensus 188 ~~-----~-----~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 188 PN-----A-----DHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN 228 (236)
T ss_dssp TT-----C-----CGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred CC-----c-----cccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCC
Confidence 10 0 0124578999999998 444777778999999998854
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=288.23 Aligned_cols=258 Identities=14% Similarity=0.035 Sum_probs=201.9
Q ss_pred cCCCEEEEEcCCChHHHH--HHHHHHHcCCcEEEEeecChHH------------HHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 84 LRKGSVIITGASSGLGLA--TAKALAETGKWHIIMACRDFLK------------AERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~a--ia~~l~~~Ga~~vv~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
..+|++|||||++|||++ +++.|+++|+ +|++++|+... .+.+.+.+...+.++.++.||++|.+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 578999999999999999 9999999996 99999886432 23344444455678999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccC------------CCCCC---------------------CCCChhhhhHhhhch
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYL------------PTAKE---------------------PTFTAEGFELSVGTN 196 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~------------~~~~~---------------------~~~~~~~~~~~~~~N 196 (399)
+++++++++.+.+|+||+||||||+.. ...++ .+.+.++|+.++++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 999999999999999999999999741 11222 356899999999999
Q ss_pred hhHHH-HHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh--hh
Q 015844 197 HLGHF-LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 273 (399)
Q Consensus 197 ~~g~~-~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 273 (399)
..+.| .+++.+.+.+...+ +|+||++||+.+.. +.+.+ ..
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~--gg~IV~iSSi~~~~-----------------------------------~~p~~~~~a 259 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSD--KATTIAYSYIGSPR-----------------------------------TYKIYREGT 259 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEE--EEEEEEEECCCCGG-----------------------------------GTTTTTTSH
T ss_pred hHHHHHHHHHHHHHHhhhcC--CcEEEEEeCchhcC-----------------------------------CCCccccHH
Confidence 99998 77888776543332 48999999998764 23445 89
Q ss_pred HHHhHHHHHHHHHHHHHhhccC-CceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcC
Q 015844 274 YKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 274 Y~~sK~a~~~~~~~la~~~~~~-~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~ 352 (399)
|++||+|+++|+++|+.|+ ++ .|||||+|+||.|+|++... . +....... ....++++..+||++++.+.+|+++
T Consensus 260 Y~ASKaAL~~ltrsLA~EL-a~~~GIrVN~V~PG~v~T~~s~~-i-p~~p~y~~-~~~~~mk~~G~~E~v~e~~~~L~sd 335 (418)
T 4eue_A 260 IGIAKKDLEDKAKLINEKL-NRVIGGRAFVSVNKALVTKASAY-I-PTFPLYAA-ILYKVMKEKNIHENCIMQIERMFSE 335 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHSCEEEEEECCCCCCHHHHT-S-TTHHHHHH-HHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CCccCeEEEEEECCcCcChhhhc-C-CCCcHHHH-HHHHHHhhcCChHHHHHHHHHHhhc
Confidence 9999999999999999999 56 69999999999999984422 1 21111111 1122467788999999999999988
Q ss_pred CCCCCCceEEccCCCCcccccccCcccCCHHHHHHH
Q 015844 353 PSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKV 388 (399)
Q Consensus 353 ~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~l 388 (399)
. ..+|+++.+|+.. ....+++..+++.|+++
T Consensus 336 ~--~~~g~~~~~D~~~---~~r~d~~e~~~~~q~~~ 366 (418)
T 4eue_A 336 K--IYSNEKIQFDDKG---RLRMDDLELRKDVQDEV 366 (418)
T ss_dssp T--TSSSSCCCCCTTS---CEESCTTTTCHHHHHHH
T ss_pred c--ccCCCccccCCCc---eeeCChhhcCHHHHHHH
Confidence 3 4689998888742 35778889999888655
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=272.00 Aligned_cols=254 Identities=21% Similarity=0.252 Sum_probs=188.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHH-cCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++|++|||||++|||+++++.|++ +|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++++.+.++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999 995 999999998888877777765567789999999999999999999999999
Q ss_pred CccEEEecCcccCCCCCCCCCC-hhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC---
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFT-AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP--- 239 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~-~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~--- 239 (399)
++|+||||||+... .. ...+ .++|++++++|+.|++++++.+++.|++ .|+||++||..+..+... ..+
T Consensus 82 ~id~li~~Ag~~~~-~~-~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~~sS~~~~~~~~~-~~~~~~ 154 (276)
T 1wma_A 82 GLDVLVNNAGIAFK-VA-DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP----QGRVVNVSSIMSVRALKS-CSPELQ 154 (276)
T ss_dssp SEEEEEECCCCCCC-TT-CCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEECCHHHHHHHHT-SCHHHH
T ss_pred CCCEEEECCccccc-CC-CccccHHHHHhhhheeeeeHHHHHHHHHHhhCC----CCEEEEECChhhhccccc-CChhHH
Confidence 99999999998643 22 2334 5899999999999999999999998875 269999999887632100 000
Q ss_pred -----CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccC---CceEEEEeeCCcccCC
Q 015844 240 -----PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATT 311 (399)
Q Consensus 240 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~---~gi~v~~v~PG~v~T~ 311 (399)
......++..+...+............+++. ..|++||++++.|++.++.++... .||+|++|+||+|+|+
T Consensus 155 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~ 233 (276)
T 1wma_A 155 QKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPS-SAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 233 (276)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCS-CHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred hhccccccchhhhhhhhhhhhhhhcccccccCCCcc-chhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccC
Confidence 0000000000000000000000000011222 789999999999999999998431 5999999999999998
Q ss_pred CCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCC--CCCCceEEccC
Q 015844 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS--LTKSGVYWSWN 365 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~--~~~~G~~~~~d 365 (399)
+... .++.+|+|+|+.++++++.+. .+++|++|..+
T Consensus 234 ~~~~------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~~~ 271 (276)
T 1wma_A 234 MAGP------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVSEK 271 (276)
T ss_dssp TTCT------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETT
T ss_pred cCCc------------------cccCChhHhhhhHhhhhcCcccccccCceEeccC
Confidence 5421 236799999999999998663 47999999843
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=271.89 Aligned_cols=217 Identities=20% Similarity=0.191 Sum_probs=156.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|++|||||++|||+++|++|++ |+ .|++++|+.+..+...+ ..++.++.+|+++.++ .+.+.+..+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~-----~~~~~~~~~D~~~~~~-~~~~~~~~~~~ 73 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAE-----IEGVEPIESDIVKEVL-EEGGVDKLKNL 73 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHT-----STTEEEEECCHHHHHH-TSSSCGGGTTC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHh-----hcCCcceecccchHHH-HHHHHHHHHhc
Confidence 57899999999999999999999988 84 89999999877766543 1358889999999877 44455555678
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||+.. ...+.+.+.++|++++++|+.|++++++.++|.|++.+ |+||++||.++..
T Consensus 74 ~~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~isS~~~~~----------- 138 (245)
T 3e9n_A 74 DHVDTLVHAAAVAR-DTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GCVIYINSGAGNG----------- 138 (245)
T ss_dssp SCCSEEEECC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEC-----------------
T ss_pred CCCCEEEECCCcCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEcCccccc-----------
Confidence 89999999999874 45677789999999999999999999999999998764 7999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+|++.|++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 139 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~--- 190 (245)
T 3e9n_A 139 ------------------------PHPGNTIYAASKHALRGLADAFRKEE-ANNGIRVSTVSPGPTNTPMLQGLMDS--- 190 (245)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC--------------
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCccCchhhhhhhh---
Confidence 44677899999999999999999999 56799999999999999854332111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
.....+.+++.+|+|+|+.++++++.+.
T Consensus 191 ----~~~~~~~~~~~~p~dvA~~i~~l~~~~~ 218 (245)
T 3e9n_A 191 ----QGTNFRPEIYIEPKEIANAIRFVIDAGE 218 (245)
T ss_dssp ---------CCGGGSCHHHHHHHHHHHHTSCT
T ss_pred ----hhcccccccCCCHHHHHHHHHHHHcCCC
Confidence 1112234567899999999999998764
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=282.00 Aligned_cols=227 Identities=19% Similarity=0.226 Sum_probs=173.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH---HHHHHHHh---ccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSA---GMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~---~~~~~~~~---~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++|++|||||++|||+++|++|+++|+ +|++++|+... .....+.+ ...+.++.++.+|++|.++++++++++
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV 79 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 368999999999999999999999996 77777765332 22222222 123467899999999999999999987
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
. ++++|+||||||+. ...++.+.+.++|+++|++|+.|+++++++++|+|++++ .|+||++||.++..
T Consensus 80 ~--~g~iD~lVnnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~--~g~IV~isS~~~~~------- 147 (327)
T 1jtv_A 80 T--EGRVDVLVCNAGLG-LLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGLM------- 147 (327)
T ss_dssp T--TSCCSEEEECCCCC-CCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTS-------
T ss_pred h--cCCCCEEEECCCcC-CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCccccc-------
Confidence 3 58999999999986 345666789999999999999999999999999998764 48999999998874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.+....|++||++++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 148 ----------------------------~~~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~v~~v~PG~v~T~~~~~~~~ 198 (327)
T 1jtv_A 148 ----------------------------GLPFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFMEKVLG 198 (327)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC-------C
T ss_pred ----------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCcccChHHhhhhh
Confidence 33567799999999999999999999 5679999999999999986532111
Q ss_pred hh----------hhh-hchhhH--HHHhcCC-CChHHHHHHHHHhhcCC
Q 015844 319 PL----------FRL-LFPPFQ--KYITKGY-VSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 319 ~~----------~~~-~~~~~~--~~~~~~~-~~pee~a~~v~~l~~~~ 353 (399)
.. ... +..... ..+.++. .+|+|+|+.++++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~l~~~~ 247 (327)
T 1jtv_A 199 SPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAP 247 (327)
T ss_dssp CHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCS
T ss_pred cchhhhccCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHcCC
Confidence 00 000 000110 1122333 59999999999999864
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=271.39 Aligned_cols=244 Identities=17% Similarity=0.154 Sum_probs=169.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||++|||+++|+.|+++|+ +|++++|+.++.+. .+.+|++|.++++++++++ .+++|
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~-------------~~~~Dl~~~~~v~~~~~~~---~~~id 64 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA-------------DLSTAEGRKQAIADVLAKC---SKGMD 64 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC-------------CTTSHHHHHHHHHHHHTTC---TTCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc-------------ccccCCCCHHHHHHHHHHh---CCCCC
Confidence 6899999999999999999999995 99999998643211 1568999999998887743 37999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||+.... +.|++++++|+.|+++++++++|.|++++ .|+||++||.++..+.... + ....
T Consensus 65 ~lv~~Ag~~~~~--------~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~--~---~~~~ 129 (257)
T 1fjh_A 65 GLVLCAGLGPQT--------KVLGNVVSVNYFGATELMDAFLPALKKGH--QPAAVVISSVASAHLAFDK--N---PLAL 129 (257)
T ss_dssp EEEECCCCCTTC--------SSHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGSSCGGG--C---TTHH
T ss_pred EEEECCCCCCCc--------ccHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEECChhhhcccccc--c---hhhh
Confidence 999999985311 23899999999999999999999998764 4799999999887321000 0 0000
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
.... ...... .....+..+.++...|++||++++.|++.++.++ .+.||+||+|+||+|+|++........ ....
T Consensus 130 ~~~~-~~~~~~-~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~--~~~~ 204 (257)
T 1fjh_A 130 ALEA-GEEAKA-RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQDP--RYGE 204 (257)
T ss_dssp HHHH-TCHHHH-HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC-------------------
T ss_pred hhcc-cchhhh-hhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCccchhhccch--hHHH
Confidence 0000 000000 0000000134578899999999999999999998 567999999999999998643221110 0011
Q ss_pred hhH--HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 327 PFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 327 ~~~--~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ..+.+++.+|+|+|+.++++++++..+++|+++.+||.
T Consensus 205 ~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG 247 (257)
T 1fjh_A 205 SIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp ----CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHhcccccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCC
Confidence 111 23456789999999999999998888899999999985
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=261.17 Aligned_cols=226 Identities=20% Similarity=0.170 Sum_probs=183.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||++++++|+++|+ +|++++|+.+ . .++.++.+|++|+++++++++++ +.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~-~-----------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~ 67 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE-G-----------EDLIYVEGDVTREEDVRRAVARA-QEEAPL 67 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC-S-----------SSSEEEECCTTCHHHHHHHHHHH-HHHSCE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc-c-----------cceEEEeCCCCCHHHHHHHHHHH-HhhCCc
Confidence 68999999999999999999999995 9999999854 1 23578999999999999999999 778899
Q ss_pred cEEEecCcccCCCCCCCCCChh----hhhHhhhchhhHHHHHHHHHHHHHhhCC---C-CCceEEEEeccccccCCCCCC
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAE----GFELSVGTNHLGHFLLSRLLLDDLKQSD---Y-PSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~----~~~~~~~~N~~g~~~l~~~~~~~l~~~~---~-~~g~iV~vSS~~~~~~~~~~~ 237 (399)
|+||||||+... ..+.+.+.+ +|++++++|+.+++++++++.+.|.+.+ . ..++||++||..+..
T Consensus 68 d~li~~ag~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------ 140 (242)
T 1uay_A 68 FAVVSAAGVGLA-EKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE------ 140 (242)
T ss_dssp EEEEECCCCCCC-CCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH------
T ss_pred eEEEEcccccCc-ccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc------
Confidence 999999998643 344444444 9999999999999999999999998753 1 125999999998764
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||+|.|++... .
T Consensus 141 -----------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~-~ 189 (242)
T 1uay_A 141 -----------------------------GQIGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQG-L 189 (242)
T ss_dssp -----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHT-S
T ss_pred -----------------------------CCCCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccCcchhhhc-c
Confidence 23567899999999999999999998 5669999999999999985422 2
Q ss_pred chhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+. .........+. +++.+|+|+|+.+++++++ .+++|+.+.+||.
T Consensus 190 ~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~~~v~gG 236 (242)
T 1uay_A 190 PEK--AKASLAAQVPFPPRLGRPEEYAALVLHILEN--PMLNGEVVRLDGA 236 (242)
T ss_dssp CHH--HHHHHHTTCCSSCSCCCHHHHHHHHHHHHHC--TTCCSCEEEESTT
T ss_pred chh--HHHHHHhhCCCcccCCCHHHHHHHHHHHhcC--CCCCCcEEEEcCC
Confidence 111 01111112233 6778999999999999988 5689999999885
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=262.02 Aligned_cols=228 Identities=19% Similarity=0.222 Sum_probs=187.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+++|++|||||+||||+++++.|+++|+ +|++++|+.+.+++..+++...+ .++.++.+|++|.++++++++++.+
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 102 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK 102 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 99999999988887776665444 3788999999999999999999999
Q ss_pred cCCCccEEEec-CcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SGRPLDVLVCN-AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~g~id~lv~n-Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.++++|+|||| ||+. .. .+.+.+.++|++++++|+.|+++++++++|.|++. .|+||++||.++..
T Consensus 103 ~~g~iD~li~naag~~-~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~-------- 169 (286)
T 1xu9_A 103 LMGGLDMLILNHITNT-SL-NLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSLAGKV-------- 169 (286)
T ss_dssp HHTSCSEEEECCCCCC-CC-CCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGTS--------
T ss_pred HcCCCCEEEECCccCC-CC-ccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC---CCEEEEECCccccc--------
Confidence 89999999999 5764 32 34456899999999999999999999999998765 37999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCccccc
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||++++.|++.++.|+. ...||+|++|+||+|+|++......
T Consensus 170 ---------------------------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~ 222 (286)
T 1xu9_A 170 ---------------------------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVS 222 (286)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSC
T ss_pred ---------------------------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhcc
Confidence 345678999999999999999999983 3569999999999999984321110
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
. .......+|+++|+.++..+... ..+.++++
T Consensus 223 ~-----------~~~~~~~~~~~vA~~i~~~~~~~---~~~~~~~~ 254 (286)
T 1xu9_A 223 G-----------IVHMQAAPKEECALEIIKGGALR---QEEVYYDS 254 (286)
T ss_dssp G-----------GGGGGCBCHHHHHHHHHHHHHTT---CSEEEECS
T ss_pred c-----------cccCCCCCHHHHHHHHHHHHhcC---CceEEecc
Confidence 0 01123579999999999988764 34566654
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-33 Score=295.84 Aligned_cols=236 Identities=14% Similarity=0.109 Sum_probs=189.1
Q ss_pred ccccCCCEEEEEcCCCh-HHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhc----cCCCcEEEEEecCCCHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQF 154 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~g-IG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~----~~~~~~~~~~~Dvs~~~~v~~~ 154 (399)
.+++++|++|||||++| ||+++|++|+++|+ +|+++ +|+.+.+++..+++. ..+.++.++.||++|.++++++
T Consensus 471 ~msL~GKvALVTGASgGGIGrAIAr~LA~~GA-~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaL 549 (1688)
T 2pff_A 471 XVTFKDKYVLITGAGKGSIGAEVLQGLLQGGA-KVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEAL 549 (1688)
T ss_dssp CCCCCSCCEEECSCSSSSTHHHHHHHHHHHTC-EEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHH
T ss_pred ccccCCCEEEEECCChHHHHHHHHHHHHHCcC-EEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHH
Confidence 34688999999999998 99999999999997 78777 677666655555552 2256789999999999999999
Q ss_pred HHHHHHc-----CC-CccEEEecCcccCCCC-CCCCCC--hhhhhHhhhchhhHHHHHHHHH--HHHHhhCCCCCceEEE
Q 015844 155 VDTFRRS-----GR-PLDVLVCNAAVYLPTA-KEPTFT--AEGFELSVGTNHLGHFLLSRLL--LDDLKQSDYPSKRLII 223 (399)
Q Consensus 155 ~~~~~~~-----~g-~id~lv~nAg~~~~~~-~~~~~~--~~~~~~~~~~N~~g~~~l~~~~--~~~l~~~~~~~g~iV~ 223 (399)
++++.+. +| +||+||||||+.. .. ++.+.+ .++|+++|++|+.|++++++.+ +|.|++++ .|+||+
T Consensus 550 Ve~I~e~~~~~GfG~~IDILVNNAGI~~-~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krg--gGrIVn 626 (1688)
T 2pff_A 550 IEFIYDTEKNGGLGWDLDAIIPFAAIPE-QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRP--AQVILP 626 (1688)
T ss_dssp HHHHHSCTTSSSCCCCCCEEECCCCCCC-CSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSC--EEECCC
T ss_pred HHHHHHhccccccCCCCeEEEECCCcCC-CCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCC--CCEEEE
Confidence 9999988 77 9999999999864 34 677777 8999999999999999999998 78887654 479999
Q ss_pred EeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHH-HHHHHHhhccCCceEEEE
Q 015844 224 VGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT-MQEFHRRFHEETGIAFAS 302 (399)
Q Consensus 224 vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~-~~~la~~~~~~~gi~v~~ 302 (399)
+||.++.. ++...|++||+|+++| ++.++.++ .+. |+||+
T Consensus 627 ISSiAG~~-------------------------------------Gg~saYaASKAAL~aLttrsLAeEl-a~~-IRVNa 667 (1688)
T 2pff_A 627 MSPNHGTF-------------------------------------GGDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCG 667 (1688)
T ss_dssp CCSCTTTS-------------------------------------SCBTTHHHHHHHHTHHHHHTTTSSC-TTT-EECCC
T ss_pred EEChHhcc-------------------------------------CCchHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEE
Confidence 99988764 2456899999999999 77788877 454 99999
Q ss_pred eeCCccc-CCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccC
Q 015844 303 LYPGCIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWN 365 (399)
Q Consensus 303 v~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~d 365 (399)
|+||+|+ |+++... .. ........+. +..+|+|+|+.++||+++. ..+++|+.+.+|
T Consensus 668 VaPG~V~TT~M~~~~--e~---~~~~l~~ipl-R~~sPEEVA~aIlFLaSd~sAs~ITGq~I~VD 726 (1688)
T 2pff_A 668 AIIGWTRGTGLMSAN--NI---IAEGIEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMAD 726 (1688)
T ss_dssp CCCCCCCCCSSSCTT--TT---CSTTTSSSSC-CCCCCCTTHHHHHHHTSTTHHHHHTTSCCCCC
T ss_pred EEECcCcCCcccCCc--hH---HHHHHHhCCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEE
Confidence 9999999 6654321 10 0111111222 4569999999999999987 567899998765
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=300.72 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=188.6
Q ss_pred cccCCCEEEEEcCCCh-HHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHh----ccCCCcEEEEEecCCCHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAAKSA----GMAKENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~g-IG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~----~~~~~~~~~~~~Dvs~~~~v~~~~ 155 (399)
+.+++|++|||||++| ||+++|+.|+++|+ +|+++ +|+.+..++..+++ ...+.++.++.||++|.+++++++
T Consensus 671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA-~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGA-KVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp BCCTTCEEEEESCCSSSHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 4688999999999998 99999999999996 88887 68776665555444 334678999999999999999999
Q ss_pred HHHHHc-----CC-CccEEEecCcccCCCC-CCCCCC--hhhhhHhhhchhhHHHHHHHHH--HHHHhhCCCCCceEEEE
Q 015844 156 DTFRRS-----GR-PLDVLVCNAAVYLPTA-KEPTFT--AEGFELSVGTNHLGHFLLSRLL--LDDLKQSDYPSKRLIIV 224 (399)
Q Consensus 156 ~~~~~~-----~g-~id~lv~nAg~~~~~~-~~~~~~--~~~~~~~~~~N~~g~~~l~~~~--~~~l~~~~~~~g~iV~v 224 (399)
+++.+. +| +||+||||||+.. .. ++.+.+ .++|+++|++|+.|++++++.+ +|.|.+++ .|+||++
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~-~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~--~G~IVnI 826 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPE-QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRP--AQVILPM 826 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCC-CSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCC--EEEEEEE
T ss_pred HHHHHhccccccCCCCeEEEECCCcCC-CCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCC--CCEEEEE
Confidence 999988 66 9999999999864 34 666778 8999999999999999999988 67776653 4799999
Q ss_pred eccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHH-HHHHHHhhccCCceEEEEe
Q 015844 225 GSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT-MQEFHRRFHEETGIAFASL 303 (399)
Q Consensus 225 SS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~-~~~la~~~~~~~gi~v~~v 303 (399)
||.++.. ++...|++||+|+++| ++.++.++ .+. |+||+|
T Consensus 827 SS~ag~~-------------------------------------gg~~aYaASKAAL~~Lttr~lA~el-a~~-IrVNaV 867 (1887)
T 2uv8_A 827 SPNHGTF-------------------------------------GGDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCGA 867 (1887)
T ss_dssp CSCTTCS-------------------------------------SCBTTHHHHHHHGGGHHHHHHHSSC-TTT-EEEEEE
T ss_pred cChHhcc-------------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-CCC-eEEEEE
Confidence 9998874 1456899999999999 89999988 554 999999
Q ss_pred eCCccc-CCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccC--CC
Q 015844 304 YPGCIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWN--KD 367 (399)
Q Consensus 304 ~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~d--g~ 367 (399)
+||+|+ |+++... .. ........+. +..+|+|+|..++||+++. ..+++|+.+.+| |.
T Consensus 868 ~PG~V~tT~m~~~~-~~----~~~~~~~~pl-r~~sPEEVA~avlfLaSd~~as~iTGq~I~VDVDGG 929 (1887)
T 2uv8_A 868 IIGWTRGTGLMSAN-NI----IAEGIEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGG 929 (1887)
T ss_dssp EECCEECC-----C-CT----THHHHHTTSC-CCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEEESCS
T ss_pred Eecccccccccccc-hh----HHHHHHhcCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEECCCC
Confidence 999999 6654321 11 1111222222 5669999999999999987 567899988764 64
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-32 Score=293.69 Aligned_cols=238 Identities=15% Similarity=0.105 Sum_probs=189.1
Q ss_pred cccCCCEEEEEcCCCh-HHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHH----HhccCCCcEEEEEecCCCHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAAK----SAGMAKENYTIMHLDLASLDSVRQFV 155 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~g-IG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~----~~~~~~~~~~~~~~Dvs~~~~v~~~~ 155 (399)
+++++|++|||||++| ||+++|++|+++|+ +|+++ +|+.+..++..+ ++...+.++.++.||++|.+++++++
T Consensus 648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA-~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGA-KVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp BCCTTCEEEEESCCTTSHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 3688999999999999 99999999999997 78887 466655544443 33444678999999999999999999
Q ss_pred HHHHHc---CC-CccEEEecCcccCCCCCCCCCC--hhhhhHhhhchhhHHHHHHHH--HHHHHhhCCCCCceEEEEecc
Q 015844 156 DTFRRS---GR-PLDVLVCNAAVYLPTAKEPTFT--AEGFELSVGTNHLGHFLLSRL--LLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 156 ~~~~~~---~g-~id~lv~nAg~~~~~~~~~~~~--~~~~~~~~~~N~~g~~~l~~~--~~~~l~~~~~~~g~iV~vSS~ 227 (399)
+++.+. +| +||+||||||+.....++.+++ .++|+++|++|+.|++++++. +++.|.+++ .|+||++||.
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~--~G~IVnISS~ 804 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRP--AQVILPLSPN 804 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCC--EEECCEECSC
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCC--CCEEEEEcch
Confidence 999998 88 9999999999864322677888 899999999999999999987 677776653 4799999999
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHh-hccCCceEEEEeeCC
Q 015844 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR-FHEETGIAFASLYPG 306 (399)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~-~~~~~gi~v~~v~PG 306 (399)
++.. ++...|++||+++++|++.++.+ + .+. |+||+|+||
T Consensus 805 ag~~-------------------------------------gg~~aYaASKAAL~aLt~~laAeEl-a~~-IrVNaVaPG 845 (1878)
T 2uv9_A 805 HGTF-------------------------------------GNDGLYSESKLALETLFNRWYSESW-GNY-LTICGAVIG 845 (1878)
T ss_dssp SSSS-------------------------------------SCCSSHHHHHHHHTTHHHHHHHSTT-TTT-EEEEEEEEC
T ss_pred hhcc-------------------------------------CCchHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEEEec
Confidence 8874 13457999999999999877655 5 554 999999999
Q ss_pred ccc-CCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCC-CCCCceEEcc--CCC
Q 015844 307 CIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSW--NKD 367 (399)
Q Consensus 307 ~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~-~~~~G~~~~~--dg~ 367 (399)
+|+ |+|+... . .........+. +..+|+|+|..++||+++.. .+++|+.+.+ ||.
T Consensus 846 ~V~gT~m~~~~--~---~~~~~~~~~pl-r~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG 904 (1878)
T 2uv9_A 846 WTRGTGLMSAN--N---LVAEGVEKLGV-RTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGG 904 (1878)
T ss_dssp CBCCTTSCSHH--H---HTHHHHHTTTC-CCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCS
T ss_pred ceecCcccccc--h---hhHHHHHhcCC-CCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCC
Confidence 999 9865321 1 11111222222 55699999999999999876 6789998876 464
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=267.65 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=179.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecCh-------------HHHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDF-------------LKAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~-------------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
-++++||||||++|||+++|++|+++|+.+|+++ +|+. +..+++.+++...+.++.++.||++|.+
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 4689999999999999999999999998668888 8983 4455666777667889999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
+++++++++. ++++||+||||||+. ....+.+.+.++|+++|++|+.|++++++.+.+.+++++. .++||++||+++
T Consensus 329 ~v~~~~~~i~-~~g~id~vVh~AGv~-~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~-~~~iV~~SS~a~ 405 (525)
T 3qp9_A 329 AAARLLAGVS-DAHPLSAVLHLPPTV-DSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGR-PPVLVLFSSVAA 405 (525)
T ss_dssp HHHHHHHTSC-TTSCEEEEEECCCCC-CCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----C-CCEEEEEEEGGG
T ss_pred HHHHHHHHHH-hcCCCcEEEECCcCC-CCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CCEEEEECCHHH
Confidence 9999999988 789999999999997 4567889999999999999999999999999999876531 369999999999
Q ss_pred ccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
.. +.+++..|+++|+++++|+ .++ ...||++++|+||+++
T Consensus 406 ~~-----------------------------------g~~g~~~YaaaKa~l~~lA----~~~-~~~gi~v~sI~pG~~~ 445 (525)
T 3qp9_A 406 IW-----------------------------------GGAGQGAYAAGTAFLDALA----GQH-RADGPTVTSVAWSPWE 445 (525)
T ss_dssp TT-----------------------------------CCTTCHHHHHHHHHHHHHH----TSC-CSSCCEEEEEEECCBT
T ss_pred cC-----------------------------------CCCCCHHHHHHHHHHHHHH----HHH-HhCCCCEEEEECCccc
Confidence 86 3467889999999988874 455 4569999999999999
Q ss_pred CCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 310 TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 310 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
|+|....... ..+.+. ....++|+++++.+.+++.....
T Consensus 446 tgm~~~~~~~------~~~~~~-g~~~l~pee~a~~l~~~l~~~~~ 484 (525)
T 3qp9_A 446 GSRVTEGATG------ERLRRL-GLRPLAPATALTALDTALGHGDT 484 (525)
T ss_dssp TSGGGSSHHH------HHHHHT-TBCCBCHHHHHHHHHHHHHHTCS
T ss_pred cccccchhhH------HHHHhc-CCCCCCHHHHHHHHHHHHhCCCC
Confidence 9755321111 111111 22357999999999999987654
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=280.39 Aligned_cols=243 Identities=17% Similarity=0.200 Sum_probs=195.2
Q ss_pred chHhHhHHhhcccCCceeeccccCCCCccccCCCcCccccCCCEEEEEcCCChHHHHHHHHHH-HcCCcEEEEeecC---
Q 015844 45 SSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALA-ETGKWHIIMACRD--- 120 (399)
Q Consensus 45 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~lVTG~s~gIG~aia~~l~-~~Ga~~vv~~~r~--- 120 (399)
.+||+.+++..+.+|++..... ..-.+|+||||||++|||+++|++|+ ++|+++|++++|+
T Consensus 504 ~eA~~~l~~g~~~GKvVl~~~~---------------~~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~ 568 (795)
T 3slk_A 504 PEALRHLSQARHVGKLVLTMPP---------------VWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPA 568 (795)
T ss_dssp HHHHHHHHHTCCCBEEEEECCC---------------CCCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGG
T ss_pred HHHHHHHhcCCccceEEEecCc---------------ccccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccc
Confidence 8999999999999999987521 02368999999999999999999999 7998789999998
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHH
Q 015844 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200 (399)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~ 200 (399)
.+..++..++++..|.++.++.||++|.++++++++++.+.+ +||+||||||+. ....+.+++.++|+++|++|+.|+
T Consensus 569 ~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~~~-~id~lVnnAGv~-~~~~~~~~t~e~~~~~~~~nv~G~ 646 (795)
T 3slk_A 569 ASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPDEH-PLTAVVHAAGVL-DDGVSESLTVERLDQVLRPKVDGA 646 (795)
T ss_dssp STTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS-CEEEEEECCCCC-CCCCGGGCCHHHHHHHHCCCCCHH
T ss_pred hHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHhC-CCEEEEECCCcC-CCCchhhCCHHHHHHHHHHHHHHH
Confidence 445667777787778899999999999999999999988776 899999999997 457788999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHH
Q 015844 201 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVC 280 (399)
Q Consensus 201 ~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a 280 (399)
+++++++.|.| +||++||+++.. +.+++..|+++|++
T Consensus 647 ~~l~~~~~~~l--------~iV~~SS~ag~~-----------------------------------g~~g~~~YaAaka~ 683 (795)
T 3slk_A 647 RNLLELIDPDV--------ALVLFSSVSGVL-----------------------------------GSGGQGNYAAANSF 683 (795)
T ss_dssp HHHHHHSCTTS--------EEEEEEETHHHH-----------------------------------TCSSCHHHHHHHHH
T ss_pred HHHHHHHhhCC--------EEEEEccHHhcC-----------------------------------CCCCCHHHHHHHHH
Confidence 99999986654 799999999986 34788999999965
Q ss_pred HHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCC
Q 015844 281 NMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 356 (399)
Q Consensus 281 ~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~ 356 (399)
++.|++++ ...||++|+|+||++.|+++....... ....+.+.. ...++++|+...+..++..+...
T Consensus 684 ----~~alA~~~-~~~Gi~v~sI~pG~v~t~g~~~~~~~~---~~~~~~~~g-~~~l~~~e~~~~~~~~l~~~~~~ 750 (795)
T 3slk_A 684 ----LDALAQQR-QSRGLPTRSLAWGPWAEHGMASTLREA---EQDRLARSG-LLPISTEEGLSQFDAACGGAHTV 750 (795)
T ss_dssp ----HHHHHHHH-HHTTCCEEEEEECCCSCCCHHHHHHHH---HHHHHHHTT-BCCCCHHHHHHHHHHHHTSSCSS
T ss_pred ----HHHHHHHH-HHcCCeEEEEECCeECcchhhccccHH---HHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCcE
Confidence 55555565 345999999999999998664322111 111122222 23468888888887777665543
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=231.34 Aligned_cols=201 Identities=20% Similarity=0.218 Sum_probs=164.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||+||||++++++|+++ +|++++|+.++.+...+++.. .++.+|++|++++++++++ ++++|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~~~~~~----~~~id 68 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREVGA-----RALPADLADELEAKALLEE----AGPLD 68 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHHTC-----EECCCCTTSHHHHHHHHHH----HCSEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhccC-----cEEEeeCCCHHHHHHHHHh----cCCCC
Confidence 57999999999999999999987 899999998887777666532 7889999999999999887 57899
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||.. ...++.+.+.++|++++++|+.+++++++++ .+.+ .++||++||..+..
T Consensus 69 ~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~iv~~sS~~~~~--------------- 126 (207)
T 2yut_A 69 LLVHAVGKA-GRASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQK--GARAVFFGAYPRYV--------------- 126 (207)
T ss_dssp EEEECCCCC-CCBCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEE--EEEEEEECCCHHHH---------------
T ss_pred EEEECCCcC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcC--CcEEEEEcChhhcc---------------
Confidence 999999986 4456667889999999999999999999988 2222 47999999988764
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
+.++...|++||++++.+++.++.++ .+.||++++|+||++.|++.....
T Consensus 127 --------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~t~~~~~~~--------- 176 (207)
T 2yut_A 127 --------------------QVPGFAAYAAAKGALEAYLEAARKEL-LREGVHLVLVRLPAVATGLWAPLG--------- 176 (207)
T ss_dssp --------------------SSTTBHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEECCCCBCSGGGGGGT---------
T ss_pred --------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhhCCEEEEEecCcccCCCccccC---------
Confidence 33567899999999999999999998 567999999999999998532211
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.+.+++++|+|+|+.+++++.++..
T Consensus 177 ----~~~~~~~~~~dva~~~~~~~~~~~~ 201 (207)
T 2yut_A 177 ----GPPKGALSPEEAARKVLEGLFREPV 201 (207)
T ss_dssp ----SCCTTCBCHHHHHHHHHHHHC--CC
T ss_pred ----CCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 1125678999999999999987643
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=231.88 Aligned_cols=198 Identities=15% Similarity=0.152 Sum_probs=165.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+||||++++++|+ +|+ +|++++|+.. .+.+|++|+++++++++++ +++|+
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~-----------------~~~~D~~~~~~~~~~~~~~----~~~d~ 61 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG-----------------DVTVDITNIDSIKKMYEQV----GKVDA 61 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS-----------------SEECCTTCHHHHHHHHHHH----CCEEE
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc-----------------ceeeecCCHHHHHHHHHHh----CCCCE
Confidence 79999999999999999999 995 9999999853 4689999999999998875 68999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||||.. ...++.+.+.++|++.+++|+.+++++++++.+.|.+ +++||++||..+..
T Consensus 62 vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~iv~~sS~~~~~---------------- 120 (202)
T 3d7l_A 62 IVSATGSA-TFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND----KGSFTLTTGIMMED---------------- 120 (202)
T ss_dssp EEECCCCC-CCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE----EEEEEEECCGGGTS----------------
T ss_pred EEECCCCC-CCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc----CCEEEEEcchhhcC----------------
Confidence 99999986 3455667789999999999999999999999998865 26999999987763
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
+.++...|+++|++++.+++.++.++ +.||++++|+||++.|++... .
T Consensus 121 -------------------~~~~~~~Y~~sK~~~~~~~~~~~~e~--~~gi~v~~v~pg~v~~~~~~~-----~------ 168 (202)
T 3d7l_A 121 -------------------PIVQGASAAMANGAVTAFAKSAAIEM--PRGIRINTVSPNVLEESWDKL-----E------ 168 (202)
T ss_dssp -------------------CCTTCHHHHHHHHHHHHHHHHHTTSC--STTCEEEEEEECCBGGGHHHH-----G------
T ss_pred -------------------CCCccHHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEecCccCCchhhh-----h------
Confidence 34567899999999999999999997 459999999999999974210 0
Q ss_pred hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 328 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 328 ~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
...+...+++|+|+|+.+++++. .+.+|+.+.+|
T Consensus 169 -~~~~~~~~~~~~dva~~~~~~~~---~~~~G~~~~vd 202 (202)
T 3d7l_A 169 -PFFEGFLPVPAAKVARAFEKSVF---GAQTGESYQVY 202 (202)
T ss_dssp -GGSTTCCCBCHHHHHHHHHHHHH---SCCCSCEEEEC
T ss_pred -hhccccCCCCHHHHHHHHHHhhh---ccccCceEecC
Confidence 01123457899999999998883 35789887664
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=257.59 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=180.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++||||||++|||+++|++|+++|+.+|++++|+. +..+++.+++...+.++.++.||++|.++++++++++.+.
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~- 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED- 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT-
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh-
Confidence 589999999999999999999999977899999974 3456667777777889999999999999999999998776
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++||+||||||+......+.+++.++|+++|++|+.|++++++.+.+.+ .++||++||+++..
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~------~~~iV~~SS~a~~~----------- 380 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD------LDAFVLFSSGAAVW----------- 380 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC------CSEEEEEEEHHHHT-----------
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC------CCEEEEEeChHhcC-----------
Confidence 6899999999997455678899999999999999999999999876542 36999999999886
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+++..|+++|++++.|++.++ ..||++++|+||++.|+++......
T Consensus 381 ------------------------g~~g~~~YaAaKa~ldala~~~~-----~~Gi~v~sV~pG~w~~~gm~~~~~~--- 428 (496)
T 3mje_A 381 ------------------------GSGGQPGYAAANAYLDALAEHRR-----SLGLTASSVAWGTWGEVGMATDPEV--- 428 (496)
T ss_dssp ------------------------TCTTCHHHHHHHHHHHHHHHHHH-----HTTCCCEEEEECEESSSCC---------
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHH-----hcCCeEEEEECCcccCCccccChHH---
Confidence 33678899999999999887544 3499999999999988766432111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
...+.+. ....++|++++..+.+++..+.....-.+++|+
T Consensus 429 --~~~l~~~-g~~~l~pe~~~~~l~~~l~~~~~~~~v~~ldw~ 468 (496)
T 3mje_A 429 --HDRLVRQ-GVLAMEPEHALGALDQMLENDDTAAAITLMDWE 468 (496)
T ss_dssp --CHHHHHT-TEEEECHHHHHHHHHHHHHHTCSEEEECEECHH
T ss_pred --HHHHHhc-CCCCCCHHHHHHHHHHHHcCCCceEEEEEccHH
Confidence 1111111 112469999999999999876654444455543
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=237.48 Aligned_cols=242 Identities=20% Similarity=0.165 Sum_probs=172.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||+||||+++++.|+++|+ +|++++|+.++.+. .+.+|++|.++++++++++ .+++|
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-------------~~~~D~~~~~~~~~~~~~~---~~~~d 64 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA-------------DLSTPGGRETAVAAVLDRC---GGVLD 64 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC-------------CTTSHHHHHHHHHHHHHHH---TTCCS
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc-------------cccCCcccHHHHHHHHHHc---CCCcc
Confidence 5899999999999999999999995 99999998643210 1568999999999988865 36899
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||.... .+.|+..+++|+.+++++++++.+.|++.+ .++||++||..+..+.... .....
T Consensus 65 ~vi~~Ag~~~~--------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~~~~~-----~~~~~ 129 (255)
T 2dkn_A 65 GLVCCAGVGVT--------AANSGLVVAVNYFGVSALLDGLAEALSRGQ--QPAAVIVGSIAATQPGAAE-----LPMVE 129 (255)
T ss_dssp EEEECCCCCTT--------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGSTTGGG-----CHHHH
T ss_pred EEEECCCCCCc--------chhHHHHHHHHhHHHHHHHHHHHHHhhhcC--CceEEEEeccccccccccc-----cchhh
Confidence 99999997531 245889999999999999999999998764 4799999999876421000 00000
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
..... .............++...|+.||++++.+++.++.++ .+.||++++|+||.|.|++... .... .....
T Consensus 130 ~~~~~----~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~~~~~~~-~~~~-~~~~~ 202 (255)
T 2dkn_A 130 AMLAG----DEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDW-AGRGVRLNVVAPGAVETPLLQA-SKAD-PRYGE 202 (255)
T ss_dssp HHHHT----CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECCBCSHHHHH-HHHC-TTTHH
T ss_pred hhccc----chhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEcCCcccchhhhh-cccc-hhhHH
Confidence 00000 0000000000001467899999999999999999998 5569999999999999974321 1010 00001
Q ss_pred hhHHH--HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 327 PFQKY--ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 327 ~~~~~--~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..... +.+++.+|+|+|+.++++++++..+++|+++.++|.
T Consensus 203 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 245 (255)
T 2dkn_A 203 STRRFVAPLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGG 245 (255)
T ss_dssp HHHSCCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCC
Confidence 11111 455689999999999999998777789999998884
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=280.38 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=179.8
Q ss_pred ccCCCEEEEEcCCCh-HHHHHHHHHHHcCCcEEEEeecChHH-----HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 83 ~l~~k~~lVTG~s~g-IG~aia~~l~~~Ga~~vv~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
.++||++|||||++| ||+++|+.|+++|| +|++++|+.+. ++++.+++...+.++..+.||++|.++++++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA-~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGA-TVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTC-EEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCC-EEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHH
Confidence 478999999999999 99999999999997 99999998665 666777777667789999999999999999999
Q ss_pred HHHH----cCCCccEEEecCcc----cCCCCCCCCCChhhhhHh----hhchhhHHHHHHHHHHHHHhhCCCCC--ceEE
Q 015844 157 TFRR----SGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELS----VGTNHLGHFLLSRLLLDDLKQSDYPS--KRLI 222 (399)
Q Consensus 157 ~~~~----~~g~id~lv~nAg~----~~~~~~~~~~~~~~~~~~----~~~N~~g~~~l~~~~~~~l~~~~~~~--g~iV 222 (399)
++.+ .+|+||+||||||+ ........+.+.++|+.. +++|+.+++.+++.+.+.|.+.+... +.|+
T Consensus 2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D 2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 9998 88999999999998 222223334466667666 99999999999999999998764211 1222
Q ss_pred EEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHh--hccCCceEE
Q 015844 223 IVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR--FHEETGIAF 300 (399)
Q Consensus 223 ~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~--~~~~~gi~v 300 (399)
++|+..+. +++...|++||+|+++|++.|+.| + .+ +|+|
T Consensus 2292 ~~ss~~g~-------------------------------------~g~~~aYsASKaAl~~LtrslA~E~~~-a~-~IrV 2332 (3089)
T 3zen_D 2292 PGSPNRGM-------------------------------------FGGDGAYGEAKSALDALENRWSAEKSW-AE-RVSL 2332 (3089)
T ss_dssp EECSSTTS-------------------------------------CSSCSSHHHHGGGHHHHHHHHHHCSTT-TT-TEEE
T ss_pred ECCccccc-------------------------------------CCCchHHHHHHHHHHHHHHHHHhcccc-CC-CeEE
Confidence 23332221 134457999999999999999999 6 44 7999
Q ss_pred EEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCC-CCceE--EccCCC
Q 015844 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVY--WSWNKD 367 (399)
Q Consensus 301 ~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~-~~G~~--~~~dg~ 367 (399)
|+|+||+|+|+.+....... .......+ .+..+|+|+|..++||+++.+.+ .+|+- ++.+|.
T Consensus 2333 n~v~PG~v~tT~l~~~~~~~----~~~~~~~~-~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG 2397 (3089)
T 3zen_D 2333 AHALIGWTKGTGLMGQNDAI----VSAVEEAG-VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGG 2397 (3089)
T ss_dssp EEEECCCEECSTTTTTTTTT----HHHHGGGS-CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBS
T ss_pred EEEeecccCCCcccccchhH----HHHHHhcC-CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCC
Confidence 99999999943343221111 11111222 24459999999999999987665 44443 444463
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=234.88 Aligned_cols=217 Identities=19% Similarity=0.218 Sum_probs=169.0
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH---HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+++||||||+||||++++++|+++|+.+|++++|+.. ..+++.+++...+.++.++.||++|.++++++++.+ .
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i-~ 302 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI-G 302 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS-C
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH-H
Confidence 468999999999999999999999999767999999864 355666666666788999999999999999999988 5
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.++++|+||||||+. ....+.+.+.++|++++++|+.|++++++.+.+. + .++||++||.++..+
T Consensus 303 ~~g~ld~VIh~AG~~-~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~----~--~~~~V~~SS~a~~~g-------- 367 (486)
T 2fr1_A 303 DDVPLSAVFHAAATL-DDGTVDTLTGERIERASRAKVLGARNLHELTREL----D--LTAFVLFSSFASAFG-------- 367 (486)
T ss_dssp TTSCEEEEEECCCCC-CCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS----C--CSEEEEEEEHHHHTC--------
T ss_pred hcCCCcEEEECCccC-CCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC----C--CCEEEEEcChHhcCC--------
Confidence 678999999999987 4456778899999999999999999999987532 2 479999999988752
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+++..|+++|++++.|++.+. ..||++++|+||.+.|+++......
T Consensus 368 ---------------------------~~g~~~Yaaaka~l~~la~~~~-----~~gi~v~~i~pG~~~~~gm~~~~~~- 414 (486)
T 2fr1_A 368 ---------------------------APGLGGYAPGNAYLDGLAQQRR-----SDGLPATAVAWGTWAGSGMAEGPVA- 414 (486)
T ss_dssp ---------------------------CTTCTTTHHHHHHHHHHHHHHH-----HTTCCCEEEEECCBC-----------
T ss_pred ---------------------------CCCCHHHHHHHHHHHHHHHHHH-----hcCCeEEEEECCeeCCCcccchhHH-
Confidence 3567889999999998876543 2499999999999988744322110
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
..+. . .....++|+++++.+..++.....
T Consensus 415 -~~~~----~-~g~~~i~~e~~a~~l~~~l~~~~~ 443 (486)
T 2fr1_A 415 -DRFR----R-HGVIEMPPETACRALQNALDRAEV 443 (486)
T ss_dssp ---CT----T-TTEECBCHHHHHHHHHHHHHTTCS
T ss_pred -HHHH----h-cCCCCCCHHHHHHHHHHHHhCCCC
Confidence 0000 0 112357999999999999976543
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=229.43 Aligned_cols=212 Identities=20% Similarity=0.193 Sum_probs=168.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH---HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+++||||||+||||++++++|+++|+.+|++++|+.. ..++..+++...+.++.++.||++|.++++++++.
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~--- 333 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA--- 333 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH---
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc---
Confidence 357899999999999999999999999767999999863 35566677776778899999999999999999886
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++|+||||||+. ....+.+.+.++|+.++++|+.|++++++.+.+. . +.++||++||.++..
T Consensus 334 --~~ld~VVh~AGv~-~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~----~~~~~V~~SS~a~~~--------- 396 (511)
T 2z5l_A 334 --YPPNAVFHTAGIL-DDAVIDTLSPESFETVRGAKVCGAELLHQLTADI-K----GLDAFVLFSSVTGTW--------- 396 (511)
T ss_dssp --SCCSEEEECCCCC-CCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC-T----TCCCEEEEEEGGGTT---------
T ss_pred --CCCcEEEECCccc-CCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc-c----CCCEEEEEeCHHhcC---------
Confidence 6899999999987 4456677899999999999999999999876432 1 136999999998875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc-cCCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v-~T~~~~~~~~~ 319 (399)
+.+++..|+++|++++.|++.+. ..||++++|+||++ +|.|. .....
T Consensus 397 --------------------------g~~g~~~YaaaKa~ld~la~~~~-----~~gi~v~sv~pG~~~~tgm~-~~~~~ 444 (511)
T 2z5l_A 397 --------------------------GNAGQGAYAAANAALDALAERRR-----AAGLPATSVAWGLWGGGGMA-AGAGE 444 (511)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHH-----TTTCCCEEEEECCBCSTTCC-CCHHH
T ss_pred --------------------------CCCCCHHHHHHHHHHHHHHHHHH-----HcCCcEEEEECCcccCCccc-ccccH
Confidence 23577899999999999987653 34999999999999 66543 22110
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
. .+. ......++|+++++.+..++....
T Consensus 445 --~----~~~-~~g~~~l~~e~~a~~l~~al~~~~ 472 (511)
T 2z5l_A 445 --E----SLS-RRGLRAMDPDAAVDALLGAMGRND 472 (511)
T ss_dssp --H----HHH-HHTBCCBCHHHHHHHHHHHHHHTC
T ss_pred --H----HHH-hcCCCCCCHHHHHHHHHHHHhCCC
Confidence 1 111 112246899999999999987654
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=204.01 Aligned_cols=197 Identities=18% Similarity=0.147 Sum_probs=153.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++|++|||||+||||+++++.|+++| ++|++++|+..+.. +.++.++.+|++|.++++++++ +
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~ 64 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVA-------G 64 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHT-------T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHc-------C
Confidence 46899999999999999999999999 59999999864322 4578999999999999998886 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||+. +.+.|++++++|+.|++++++++.+. + .++||++||..++.....
T Consensus 65 ~D~vi~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iv~~SS~~~~g~~~~--------- 120 (267)
T 3rft_A 65 CDGIVHLGGIS---------VEKPFEQILQGNIIGLYNLYEAARAH----G--QPRIVFASSNHTIGYYPQ--------- 120 (267)
T ss_dssp CSEEEECCSCC---------SCCCHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEEEEGGGGTTSBT---------
T ss_pred CCEEEECCCCc---------CcCCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEcchHHhCCCCC---------
Confidence 99999999983 34568899999999999999998442 2 369999999887631100
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
..+..+..+..+...|+.||++.+.+++.++.++ |+++++|+||.|.++......
T Consensus 121 --------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~----g~~~~~vr~~~v~~~~~~~~~------- 175 (267)
T 3rft_A 121 --------------TERLGPDVPARPDGLYGVSKCFGENLARMYFDKF----GQETALVRIGSCTPEPNNYRM------- 175 (267)
T ss_dssp --------------TSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECBCSSSCCSTTH-------
T ss_pred --------------CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCeEEEEEeecccCCCCCCCc-------
Confidence 0112233355667889999999999999999886 899999999999876322111
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
...++.++++++.+..++..+..
T Consensus 176 --------~~~~~~~~d~a~~~~~~~~~~~~ 198 (267)
T 3rft_A 176 --------LSTWFSHDDFVSLIEAVFRAPVL 198 (267)
T ss_dssp --------HHHBCCHHHHHHHHHHHHHCSCC
T ss_pred --------eeeEEcHHHHHHHHHHHHhCCCC
Confidence 11256889999998888877643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=198.38 Aligned_cols=210 Identities=14% Similarity=0.150 Sum_probs=151.6
Q ss_pred CcCccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcE-EEEEecCCCHHHHHHHHH
Q 015844 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY-TIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 78 ~~~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dvs~~~~v~~~~~ 156 (399)
++..+.++++++|||||+|+||+++++.|+++| ++|++++|+.++.+.+.. .++ .++.+|++ +
T Consensus 13 ~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~------~~~~~~~~~Dl~---------~ 76 (236)
T 3e8x_A 13 GRENLYFQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEEQGPELRE------RGASDIVVANLE---------E 76 (236)
T ss_dssp --------CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH------TTCSEEEECCTT---------S
T ss_pred cccccCcCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChHHHHHHHh------CCCceEEEcccH---------H
Confidence 334557899999999999999999999999999 599999999877665443 256 88999999 2
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
.+.+.++++|+||||||... .+++++.+++|+.+++++++++... + .++||++||..+..+.
T Consensus 77 ~~~~~~~~~D~vi~~ag~~~---------~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~iv~~SS~~~~~~~--- 138 (236)
T 3e8x_A 77 DFSHAFASIDAVVFAAGSGP---------HTGADKTILIDLWGAIKTIQEAEKR----G--IKRFIMVSSVGTVDPD--- 138 (236)
T ss_dssp CCGGGGTTCSEEEECCCCCT---------TSCHHHHHHTTTHHHHHHHHHHHHH----T--CCEEEEECCTTCSCGG---
T ss_pred HHHHHHcCCCEEEECCCCCC---------CCCccccchhhHHHHHHHHHHHHHc----C--CCEEEEEecCCCCCCC---
Confidence 33344568999999999752 2568899999999999999998543 2 3699999996544200
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
..+ .+...|+.+|++.+.+.+ + .||++++|+||.+.|++....
T Consensus 139 ----------------------------~~~-~~~~~Y~~sK~~~e~~~~----~----~gi~~~~lrpg~v~~~~~~~~ 181 (236)
T 3e8x_A 139 ----------------------------QGP-MNMRHYLVAKRLADDELK----R----SSLDYTIVRPGPLSNEESTGK 181 (236)
T ss_dssp ----------------------------GSC-GGGHHHHHHHHHHHHHHH----H----SSSEEEEEEECSEECSCCCSE
T ss_pred ----------------------------CCh-hhhhhHHHHHHHHHHHHH----H----CCCCEEEEeCCcccCCCCCCe
Confidence 001 467899999999888765 2 489999999999999743221
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.... .... ....++.++|+|+.+++++.++. ..|+.+.+++.
T Consensus 182 ~~~~-~~~~------~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~v~~~ 223 (236)
T 3e8x_A 182 VTVS-PHFS------EITRSITRHDVAKVIAELVDQQH--TIGKTFEVLNG 223 (236)
T ss_dssp EEEE-SSCS------CCCCCEEHHHHHHHHHHHTTCGG--GTTEEEEEEEC
T ss_pred EEec-cCCC------cccCcEeHHHHHHHHHHHhcCcc--ccCCeEEEeCC
Confidence 1110 0000 02357899999999999998864 57877777553
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=250.41 Aligned_cols=221 Identities=18% Similarity=0.149 Sum_probs=162.6
Q ss_pred chHhHhHHhhcccCCceeeccccCCCCccc---cCC---CcCccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee
Q 015844 45 SSALRCKREFSQRNGVVRAQTMATASPAVD---VSS---PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118 (399)
Q Consensus 45 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~ 118 (399)
.+|++.++...+.+|++.........+... +.+ .+......+|+||||||++|||+++|++|+++|+++|++++
T Consensus 1837 ~eA~~~l~~g~~~GKvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~ 1916 (2512)
T 2vz8_A 1837 EAAFRYMAQGKHIGKVVIQVREEEQGPAPRGLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTS 1916 (2512)
T ss_dssp HHHHHHHHTTCCSSEEEEECSCCCCSSCCCCCCCCCEEEECCCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHhhhccCccceEEEECCCcccccccccccccccccccccccCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEe
Confidence 789999999999999988754322111111 000 01112347899999999999999999999999986699999
Q ss_pred cChHH---HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhc
Q 015844 119 RDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195 (399)
Q Consensus 119 r~~~~---~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 195 (399)
|+..+ ..+..+++...+.++.++.||++|.++++++++++.+ +++||+||||||+. ....+.+++.++|++++++
T Consensus 1917 R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~-~g~id~lVnnAgv~-~~~~~~~~t~e~~~~~~~~ 1994 (2512)
T 2vz8_A 1917 RSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ-LGPVGGVFNLAMVL-RDAVLENQTPEFFQDVSKP 1994 (2512)
T ss_dssp SSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH-HSCEEEEEECCCC-----------------CTTT
T ss_pred CCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh-cCCCcEEEECCCcC-CCCchhhCCHHHHHHHHHH
Confidence 98533 3444555555577899999999999999999999874 78999999999987 4567888999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHH
Q 015844 196 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYK 275 (399)
Q Consensus 196 N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 275 (399)
|+.|++++++++.+.|.+. |+||++||+++.. +.+++..|+
T Consensus 1995 nv~g~~~l~~~~~~~~~~~----g~iV~iSS~ag~~-----------------------------------g~~g~~~Y~ 2035 (2512)
T 2vz8_A 1995 KYSGTANLDRVTREACPEL----DYFVIFSSVSCGR-----------------------------------GNAGQANYG 2035 (2512)
T ss_dssp THHHHHHHHHHHHHHCTTC----CEEEEECCHHHHT-----------------------------------TCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcccC----CEEEEecchhhcC-----------------------------------CCCCcHHHH
Confidence 9999999999999988653 6999999999885 336788999
Q ss_pred HhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 276 DSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 276 ~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
++|+++++|++.+..+ |++..++..|.+...
T Consensus 2036 aaKaal~~l~~~rr~~-----Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2036 FANSAMERICEKRRHD-----GLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp HHHHHHHHHHHHHHHT-----TSCCCEEEECCBCTT
T ss_pred HHHHHHHHHHHHHHHC-----CCcEEEEEccCcCCc
Confidence 9999999999976654 777788887776543
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=200.37 Aligned_cols=220 Identities=16% Similarity=0.206 Sum_probs=165.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++|++|||||+|+||.+++++|+++ |+..|++++|+..+...+.+.+. ..++.++.+|++|.+++.++++
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~----- 90 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN--DPRMRFFIGDVRDLERLNYALE----- 90 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC--CTTEEEEECCTTCHHHHHHHTT-----
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHh-----
Confidence 578899999999999999999999999 95499999999887777666654 2578899999999999887764
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++|+||||||.... ........+.+++|+.|+.++++++.+.. .++||++||..+.
T Consensus 91 --~~D~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~------v~~~V~~SS~~~~----------- 146 (344)
T 2gn4_A 91 --GVDICIHAAALKHV-----PIAEYNPLECIKTNIMGASNVINACLKNA------ISQVIALSTDKAA----------- 146 (344)
T ss_dssp --TCSEEEECCCCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHTT------CSEEEEECCGGGS-----------
T ss_pred --cCCEEEECCCCCCC-----CchhcCHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEecCCccC-----------
Confidence 69999999997521 11234567899999999999999998752 3599999997654
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.+...|+.||++.+.+++.++.++ .+.|+++++|+||.|.++.- ...+..
T Consensus 147 ---------------------------~p~~~Y~~sK~~~E~~~~~~~~~~-~~~g~~~~~vRpg~v~g~~~--~~i~~~ 196 (344)
T 2gn4_A 147 ---------------------------NPINLYGATKLCSDKLFVSANNFK-GSSQTQFSVVRYGNVVGSRG--SVVPFF 196 (344)
T ss_dssp ---------------------------SCCSHHHHHHHHHHHHHHHGGGCC-CSSCCEEEEECCCEETTCTT--SHHHHH
T ss_pred ---------------------------CCccHHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEEeccEECCCC--CHHHHH
Confidence 134589999999999999999887 55699999999999998731 111211
Q ss_pred hhhc-------hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 322 RLLF-------PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 322 ~~~~-------~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... ........+.+++++|+|+.+++++... ..|..+..++
T Consensus 197 ~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~~~---~~g~~~~~~~ 245 (344)
T 2gn4_A 197 KKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRM---HGGEIFVPKI 245 (344)
T ss_dssp HHHHHHTCCCEEESCTTCEEEEECHHHHHHHHHHHHHHC---CSSCEEEECC
T ss_pred HHHHHcCCCceEEeCCCeEEeeEEHHHHHHHHHHHHhhc---cCCCEEecCC
Confidence 1000 0000001123579999999999998764 2465555544
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=190.18 Aligned_cols=259 Identities=13% Similarity=0.077 Sum_probs=184.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHH-HcCCcEEEEeecChH------------HHHHHHHHhccCCCcEEEEEecCCCHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFL------------KAERAAKSAGMAKENYTIMHLDLASLD 149 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~-~~Ga~~vv~~~r~~~------------~~~~~~~~~~~~~~~~~~~~~Dvs~~~ 149 (399)
...+|++|||||++|||++++..|+ ..|+ .+++++++.+ ......+.++..|.+...+.||++|.+
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA-~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e 125 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGA-ATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDE 125 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHH
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCC-CEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHH
Confidence 3567999999999999999999998 6897 7777776532 233455666677889999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcccCCCC------------CC---------------------CCCChhh---hhHhh
Q 015844 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTA------------KE---------------------PTFTAEG---FELSV 193 (399)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~------------~~---------------------~~~~~~~---~~~~~ 193 (399)
+++++++++.+++|+||+||||++...... ++ ...+.++ +..+|
T Consensus 126 ~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vM 205 (401)
T 4ggo_A 126 IKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVM 205 (401)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHH
Confidence 999999999999999999999999752111 10 1123333 34555
Q ss_pred hchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChh--
Q 015844 194 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-- 271 (399)
Q Consensus 194 ~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 271 (399)
.....+.|...+...+.|.+ ++++|.+|++.... .+|.+
T Consensus 206 g~s~~s~w~~al~~a~lla~----G~siva~SYiGse~-----------------------------------t~P~Y~~ 246 (401)
T 4ggo_A 206 GGEDWERWIKQLSKEGLLEE----GCITLAYSYIGPEA-----------------------------------TQALYRK 246 (401)
T ss_dssp SSHHHHHHHHHHHHTTCEEE----EEEEEEEECCCCGG-----------------------------------GHHHHTT
T ss_pred hhhHHHHHHHHHHhhhcccC----CceEEEEeccCcce-----------------------------------eecCCCc
Confidence 56666677777777776755 47999999976542 22333
Q ss_pred hhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhc
Q 015844 272 KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVS 351 (399)
Q Consensus 272 ~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~ 351 (399)
..++.+|++++..++.|+.++ . ++++++++||.+.|.. ....|........+.+. ++...+-|.+.+.+..|..
T Consensus 247 G~mG~AKaaLEa~~r~La~eL-~--~~~a~v~v~~a~vT~A--ssaIP~~ply~~~l~kv-mk~~g~heg~ieq~~rl~~ 320 (401)
T 4ggo_A 247 GTIGKAKEHLEATAHRLNKEN-P--SIRAFVSVNKGLVTRA--SAVIPVIPLYLASLFKV-MKEKGNHEGCIEQITRLYA 320 (401)
T ss_dssp SHHHHHHHHHHHHHHHHHHHC-T--TEEEEEEECCCCCCTT--GGGSSSHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhc-C--CCcEEEEEcCccccch--hhcCCCchHHHHHHHHH-HHhcCCCCchHHHHHHHHH
Confidence 368999999999999999998 3 6899999999999973 33445444333333333 3445688999999999987
Q ss_pred CCCCCCCceEEccCCCCcccccccCcccCCHHHHHH---HHHH
Q 015844 352 DPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARK---VWEI 391 (399)
Q Consensus 352 ~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~---lw~~ 391 (399)
+. .+.++.-.+.|... -.+.+++..+++.|++ +|+.
T Consensus 321 ~~-ly~~~~~~~~D~~~---r~r~d~~el~~~vq~~v~~~~~~ 359 (401)
T 4ggo_A 321 ER-LYRKDGTIPVDEEN---RIRIDDWELEEDVQKAVSALMEK 359 (401)
T ss_dssp HT-TSCTTCCCCCCTTS---CEESCTTTTCHHHHHHHHHHHHH
T ss_pred Hh-hccCCCCCCcCCCC---CccCchhhcCHHHHHHHHHHHHH
Confidence 64 23333233445432 2466677778877754 5654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=179.39 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=141.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHH-HcCCcEEEEeecChH-HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 86 KGSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~-~~Ga~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.|++|||||+||||+++++.|+ +.|+ +|++++|+.+ +++++. ..+.++.++.+|++|.++++++++
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~------- 72 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEI----IDHERVTVIEGSFQNPGXLEQAVT------- 72 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHH----HTSTTEEEEECCTTCHHHHHHHHT-------
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhc----cCCCceEEEECCCCCHHHHHHHHc-------
Confidence 4789999999999999999999 8995 9999999977 554433 124578999999999999988875
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||.. |+. ++.+++.+++.+ .++||++||..++.+
T Consensus 73 ~~d~vv~~ag~~--------------------n~~-----~~~~~~~~~~~~--~~~iv~iSs~~~~~~----------- 114 (221)
T 3r6d_A 73 NAEVVFVGAMES--------------------GSD-----MASIVKALSRXN--IRRVIGVSMAGLSGE----------- 114 (221)
T ss_dssp TCSEEEESCCCC--------------------HHH-----HHHHHHHHHHTT--CCEEEEEEETTTTSC-----------
T ss_pred CCCEEEEcCCCC--------------------Chh-----HHHHHHHHHhcC--CCeEEEEeeceecCC-----------
Confidence 689999999852 222 777888887765 469999999877631
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhh----------hHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAK----------AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
.+... .|+.+|.+++.+.+ + .||++++|+||++.++..
T Consensus 115 ------------------------~~~~~~~~~~~~~~~~y~~~K~~~e~~~~----~----~~i~~~~vrpg~v~~~~~ 162 (221)
T 3r6d_A 115 ------------------------FPVALEKWTFDNLPISYVQGERQARNVLR----E----SNLNYTILRLTWLYNDPE 162 (221)
T ss_dssp ------------------------SCHHHHHHHHHTSCHHHHHHHHHHHHHHH----H----SCSEEEEEEECEEECCTT
T ss_pred ------------------------CCcccccccccccccHHHHHHHHHHHHHH----h----CCCCEEEEechhhcCCCC
Confidence 11222 79999999887664 2 489999999999988632
Q ss_pred ccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhh--cCCCCCCCceEEcc
Q 015844 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV--SDPSLTKSGVYWSW 364 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~--~~~~~~~~G~~~~~ 364 (399)
......... .....+.+++++|+|+.+++++ ++++.++++.+...
T Consensus 163 ~~~~~~~~~------~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~~~~i~ 209 (221)
T 3r6d_A 163 XTDYELIPE------GAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVG 209 (221)
T ss_dssp CCCCEEECT------TSCCCCCEEEHHHHHHHHHHHHTCSCCGGGTTEEEEEE
T ss_pred CcceeeccC------CccCCCceeeHHHHHHHHHHHHHhcChhhhhcceeeec
Confidence 221111000 0011123678999999999999 88877776666543
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=190.76 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=161.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.-+.+++|||||+|+||.++++.|+++| +.|++++|+... +. + ++.++.+|++|.+++.++++.
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-~~----l-----~~~~~~~Dl~d~~~~~~~~~~----- 72 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSRNNEA-KL----P-----NVEMISLDIMDSQRVKKVISD----- 72 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCTTC-CC----T-----TEEEEECCTTCHHHHHHHHHH-----
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcc-cc----c-----eeeEEECCCCCHHHHHHHHHh-----
Confidence 3456799999999999999999999999 599999998643 11 1 578899999999999988875
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||.... +.+.++++..+++|+.|+.++++++ +.+.. .++||++||.+.+.... +
T Consensus 73 ~~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~~----~~~iv~~SS~~v~g~~~----~--- 135 (321)
T 2pk3_A 73 IKPDYIFHLAAKSSV-----KDSWLNKKGTFSTNVFGTLHVLDAV-RDSNL----DCRILTIGSSEEYGMIL----P--- 135 (321)
T ss_dssp HCCSEEEECCSCCCH-----HHHTTCHHHHHHHHHHHHHHHHHHH-HHHTC----CCEEEEEEEGGGTBSCC----G---
T ss_pred cCCCEEEEcCcccch-----hhhhhcHHHHHHHHHHHHHHHHHHH-HHhCC----CCeEEEEccHHhcCCCC----C---
Confidence 369999999997532 1244578899999999999999998 55421 36999999987652100 0
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
...+..+..+..+...|+.||.+.+.+++.++.++ |+++++|+||.|.+++...... ..
T Consensus 136 ---------------~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~~~~~~--~~ 194 (321)
T 2pk3_A 136 ---------------EESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY----GMDIIHTRTFNHIGPGQSLGFV--TQ 194 (321)
T ss_dssp ---------------GGCSBCTTSCCBCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCTTSH--HH
T ss_pred ---------------CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHc----CCCEEEEEeCcccCcCCCCCch--HH
Confidence 00112233344566789999999999999998875 8999999999999985432110 01
Q ss_pred hhchhhHH---------------HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 323 LLFPPFQK---------------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 323 ~~~~~~~~---------------~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.+...+.. .....++.++|+|+++++++..+ .+|..+.+++
T Consensus 195 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~g~~~~i~~ 250 (321)
T 2pk3_A 195 DFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG---KTGDVYNVCS 250 (321)
T ss_dssp HHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEESC
T ss_pred HHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC---CCCCeEEeCC
Confidence 11111111 01123578999999999999765 3566665554
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=191.54 Aligned_cols=251 Identities=12% Similarity=0.033 Sum_probs=166.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++|||||+|+||.++++.|+++| +.|++++|+. .......+.+.. ..++.++.+|++|.++++++++.. ++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 74 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKY-----MP 74 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCCccCchhhhhhhcc-CCceEEEEcCCCCHHHHHHHHhcc-----CC
Confidence 579999999999999999999999 5999998742 222222233332 236888999999999999988762 69
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||.... +.+.++++..+++|+.++.++++++.+.+.+ ++||++||.+.+. .... .+. ..
T Consensus 75 d~vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~-----~~iv~~SS~~v~g-~~~~-~~~---~e 139 (347)
T 1orr_A 75 DSCFHLAGQVAM-----TTSIDNPCMDFEINVGGTLNLLEAVRQYNSN-----CNIIYSSTNKVYG-DLEQ-YKY---NE 139 (347)
T ss_dssp SEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT-----CEEEEEEEGGGGT-TCTT-SCE---EE
T ss_pred CEEEECCcccCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-----ceEEEeccHHHhC-CCCc-CCc---cc
Confidence 999999997421 2245678899999999999999999887532 5999999987542 1100 000 00
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--hhhhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--PLFRL 323 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--~~~~~ 323 (399)
+...+... .......+..+..+...|+.||.+.+.+++.++.++ |+++++|+||.|.+++...... .....
T Consensus 140 ~~~~~~~~---~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~~~~~~~~~~~~~ 212 (347)
T 1orr_A 140 TETRYTCV---DKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF----GLNTVVFRHSSMYGGRQFATYDQGWVGWF 212 (347)
T ss_dssp CSSCEEET---TCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTCCCBTTBCHHHHH
T ss_pred cccccccc---ccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEccCceeCcCCCCCCcCcHHHHH
Confidence 00000000 000112222344567899999999999999999886 8999999999999985432110 01111
Q ss_pred hchhhHHH-----Hh---------cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 324 LFPPFQKY-----IT---------KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 324 ~~~~~~~~-----~~---------~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+....... +. ..++.++|+|+++++++..+ ...+|+.+.+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~-~~~~g~~~~v~~~ 269 (347)
T 1orr_A 213 CQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANV-SKIRGNAFNIGGT 269 (347)
T ss_dssp HHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTH-HHHTTCEEEESSC
T ss_pred HHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhcc-ccCCCCEEEeCCC
Confidence 11111111 11 11568999999999998742 2356777766653
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=192.08 Aligned_cols=238 Identities=13% Similarity=0.107 Sum_probs=162.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.++++|||||+|+||+++++.|+++|+ +|++++|+........+.+.. .+.++.++.+|++|.++++++++. +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA-----H 77 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH-----S
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc-----c
Confidence 467999999999999999999999994 999999976544333333321 245688999999999999998876 4
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||.... ....+...+.+++|+.+++++++++.. .+ .++||++||.+.+. ..
T Consensus 78 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~iv~~SS~~~~g-~~--------- 136 (341)
T 3enk_A 78 PITAAIHFAALKAV-----GESVAKPIEYYRNNLDSLLSLLRVMRE----RA--VKRIVFSSSATVYG-VP--------- 136 (341)
T ss_dssp CCCEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHH----TT--CCEEEEEEEGGGBC-SC---------
T ss_pred CCcEEEECcccccc-----CccccChHHHHHHHHHHHHHHHHHHHh----CC--CCEEEEEecceEec-CC---------
Confidence 79999999997532 113455667899999999998876543 32 36999999976652 10
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc---cccc-h
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF---REHI-P 319 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~---~~~~-~ 319 (399)
...+..+..+..+...|+.||.+.+.+++.++.++ .++++++++||.|.++... .... .
T Consensus 137 --------------~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lRp~~v~G~~~~~~~g~~~~~ 199 (341)
T 3enk_A 137 --------------ERSPIDETFPLSATNPYGQTKLMAEQILRDVEAAD---PSWRVATLRYFNPVGAHESGLIGEDPAG 199 (341)
T ss_dssp --------------SSSSBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHC---TTCEEEEEEECEEECCCTTSSCCCCCSS
T ss_pred --------------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC---CCceEEEEeeccccCCccccccCCCccc
Confidence 01122233345566789999999999999999886 2699999999999876321 0000 0
Q ss_pred hhhhhchhhHHHH---------------------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLLFPPFQKYI---------------------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~~~~~~~~~---------------------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
....+...+.... ...++.++|+|+++++++........|..+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~ 267 (341)
T 3enk_A 200 IPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGT 267 (341)
T ss_dssp SCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESC
T ss_pred CccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCC
Confidence 0000011111100 1124678999999999987632234566666654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-24 Score=192.41 Aligned_cols=196 Identities=18% Similarity=0.151 Sum_probs=144.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCc--EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKW--HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|++|++|||||+||||+++++.|+++| + +|++++|+.+..+... ..++.++.+|++|.++++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G-~~~~V~~~~r~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~----- 83 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFDEEA------YKNVNQEVVDFEKLDDYASAFQ----- 83 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCCSGG------GGGCEEEECCGGGGGGGGGGGS-----
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCC-CCCEEEEEEcCCCCccccc------cCCceEEecCcCCHHHHHHHhc-----
Confidence 568899999999999999999999999 6 8999999865432111 1257889999999988877664
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++|+||||||... ..++++..+++|+.+++++++++.+ .+ .++||++||..++.
T Consensus 84 --~~d~vi~~ag~~~--------~~~~~~~~~~~n~~~~~~~~~~~~~----~~--~~~iv~~SS~~~~~---------- 137 (242)
T 2bka_A 84 --GHDVGFCCLGTTR--------GKAGAEGFVRVDRDYVLKSAELAKA----GG--CKHFNLLSSKGADK---------- 137 (242)
T ss_dssp --SCSEEEECCCCCH--------HHHHHHHHHHHHTHHHHHHHHHHHH----TT--CCEEEEECCTTCCT----------
T ss_pred --CCCEEEECCCccc--------ccCCcccceeeeHHHHHHHHHHHHH----CC--CCEEEEEccCcCCC----------
Confidence 6999999999742 1245788999999999998887543 22 36999999987652
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCce-EEEEeeCCcccCCCCccccchh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi-~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
++...|+.+|++++.+++. + ++ ++++|+||.+.|++.......
T Consensus 138 ---------------------------~~~~~Y~~sK~~~e~~~~~----~----~~~~~~~vrpg~v~~~~~~~~~~~- 181 (242)
T 2bka_A 138 ---------------------------SSNFLYLQVKGEVEAKVEE----L----KFDRYSVFRPGVLLCDRQESRPGE- 181 (242)
T ss_dssp ---------------------------TCSSHHHHHHHHHHHHHHT----T----CCSEEEEEECCEEECTTGGGSHHH-
T ss_pred ---------------------------CCcchHHHHHHHHHHHHHh----c----CCCCeEEEcCceecCCCCCCcHHH-
Confidence 1234799999998888753 2 55 799999999999843211111
Q ss_pred hhhhchhh-HHHH----hcCCCChHHHHHHHHHhhcCCCC
Q 015844 321 FRLLFPPF-QKYI----TKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 321 ~~~~~~~~-~~~~----~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
.+...+ ...+ ..++++++|+|+.++++++++..
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~ 219 (242)
T 2bka_A 182 --WLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD 219 (242)
T ss_dssp --HHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC
T ss_pred --HHHHHhhcccCccccCCcccCHHHHHHHHHHHHhCccc
Confidence 110000 0111 34578999999999999988654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=191.62 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=160.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH-HHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
|+++++|||||+|+||.++++.|+++| ++|++++|+..... ...+.+. ...++.++.+|++|.+++.++++.+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~---- 74 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFASWRLKELG-IENDVKIIHMDLLEFSNIIRTIEKV---- 74 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCCSTTTTHHHHHTT-CTTTEEECCCCTTCHHHHHHHHHHH----
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccccccHhhcc-ccCceeEEECCCCCHHHHHHHHHhc----
Confidence 357899999999999999999999999 59999999864322 1122221 1246888999999999999998876
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++|+||||||.... +.+.++++..+++|+.|++++++++... .. .++||++||.+.+. ...
T Consensus 75 -~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~----~~~iv~~SS~~vyg-~~~------- 135 (345)
T 2z1m_A 75 -QPDEVYNLAAQSFV-----GVSFEQPILTAEVDAIGVLRILEALRTV-KP----DTKFYQASTSEMFG-KVQ------- 135 (345)
T ss_dssp -CCSEEEECCCCCCH-----HHHTTSHHHHHHHHTHHHHHHHHHHHHH-CT----TCEEEEEEEGGGGC-SCS-------
T ss_pred -CCCEEEECCCCcch-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC----CceEEEEechhhcC-CCC-------
Confidence 69999999997521 2245678899999999999999998853 11 25999999986542 100
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc--CCceEEEEeeCCcccCCCCccccchh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
..+..+..+..+...|+.||++.+.+++.++.++.- ..++.++.+.||.+.|.+. ......
T Consensus 136 ----------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~-~~~~~~ 198 (345)
T 2z1m_A 136 ----------------EIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVT-RKITYS 198 (345)
T ss_dssp ----------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHH-HHHHHH
T ss_pred ----------------CCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchh-HHHHHH
Confidence 001122234455678999999999999999988620 2245667778888766421 100000
Q ss_pred hhhh-c----h-hhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 321 FRLL-F----P-PFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 321 ~~~~-~----~-~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... . . ....... ..++.++|+|+++++++..+. .|.|...++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~---~~~~~i~~~ 248 (345)
T 2z1m_A 199 LARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE---PDDYVIATG 248 (345)
T ss_dssp HHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS---CCCEEECCS
T ss_pred HHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC---CceEEEeCC
Confidence 0000 0 0 0001111 226789999999999997653 355544343
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=188.47 Aligned_cols=232 Identities=13% Similarity=0.164 Sum_probs=160.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChH--HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++++|||||+|+||.++++.|+++|. ++|++++|+.. ..+.+ +.+. .+.++.++.+|++|.+++++++.
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~----- 74 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE-DDPRYTFVKGDVADYELVKELVR----- 74 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT-TCTTEEEEECCTTCHHHHHHHHH-----
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc-cCCceEEEEcCCCCHHHHHHHhh-----
Confidence 356799999999999999999999961 48999888631 11111 1111 13578899999999999888872
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++|+||||||.... +.+.++++..+++|+.|+.++++++.+. .. .++||++||...+. ...
T Consensus 75 --~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~--~~---~~~iv~~SS~~vyg-~~~------ 135 (336)
T 2hun_A 75 --KVDGVVHLAAESHV-----DRSISSPEIFLHSNVIGTYTLLESIRRE--NP---EVRFVHVSTDEVYG-DIL------ 135 (336)
T ss_dssp --TCSEEEECCCCCCH-----HHHHHCTHHHHHHHHHHHHHHHHHHHHH--CT---TSEEEEEEEGGGGC-CCS------
T ss_pred --CCCEEEECCCCcCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh--CC---CcEEEEeccHHHHC-CCC------
Confidence 69999999997521 2345678899999999999999999876 11 25999999986542 100
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
..+..+..+..+...|+.||++.+.+++.++.++ |+++++|+||.|.+++...... ..
T Consensus 136 -----------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~g~~~~~~~~-~~ 193 (336)
T 2hun_A 136 -----------------KGSFTENDRLMPSSPYSATKAASDMLVLGWTRTY----NLNASITRCTNNYGPYQFPEKL-IP 193 (336)
T ss_dssp -----------------SSCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEEECEEESTTCCTTSH-HH
T ss_pred -----------------CCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeeeeeCcCCCcCch-HH
Confidence 0112222344556789999999999999998875 8999999999999985422110 00
Q ss_pred hhhchhhH---------HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQ---------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~---------~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..+..... ......++.++|+|+.+++++... .+|..+.+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~~v~~~ 245 (336)
T 2hun_A 194 KTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKG---ESREIYNISAG 245 (336)
T ss_dssp HHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCS
T ss_pred HHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCC---CCCCEEEeCCC
Confidence 00000000 001134678999999999998753 36766666653
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=186.08 Aligned_cols=234 Identities=15% Similarity=0.105 Sum_probs=155.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH--hccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~--~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++++|||||+|+||.+++++|+++| +.|+++.|+.......... +...+.++.++.+|++|.++++++++
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 76 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK----- 76 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT-----
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc-----
Confidence 467899999999999999999999999 5999888886533222211 11111357889999999998887764
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
.+|+|||+|+.. . .. ..+..+..+++|+.|+.++++++.+... .++||++||.+++.+......
T Consensus 77 --~~d~Vih~A~~~-~---~~--~~~~~~~~~~~nv~gt~~ll~a~~~~~~-----~~riV~~SS~~~~~~~~~~~~--- 140 (337)
T 2c29_D 77 --GCTGVFHVATPM-D---FE--SKDPENEVIKPTIEGMLGIMKSCAAAKT-----VRRLVFTSSAGTVNIQEHQLP--- 140 (337)
T ss_dssp --TCSEEEECCCCC-C---SS--CSSHHHHTHHHHHHHHHHHHHHHHHHSC-----CCEEEEECCGGGTSCSSSCCS---
T ss_pred --CCCEEEEecccc-C---CC--CCChHHHHHHHHHHHHHHHHHHHHhCCC-----ccEEEEeeeHhhcccCCCCCc---
Confidence 589999999864 1 11 1223456899999999999999887531 259999999886642210000
Q ss_pred CCccccccccCCCCCCCCCCCCCCC--C-------CChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGG--D-------FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
...+.. + .++...|+.||.+.+.+++.++.+. ||++++|+||.|.+++
T Consensus 141 -------------------~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~ 197 (337)
T 2c29_D 141 -------------------VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN----NIDFITIIPTLVVGPF 197 (337)
T ss_dssp -------------------EECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH----TCCEEEEEECEEESCC
T ss_pred -------------------ccCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCC
Confidence 000100 0 0123479999999998888777554 8999999999999985
Q ss_pred Cccccchhhhhh------c-hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 313 LFREHIPLFRLL------F-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 313 ~~~~~~~~~~~~------~-~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
............ . ..+......+++.++|+|+++++++..+ ..+|.|+..
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~~~ 254 (337)
T 2c29_D 198 IMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENP--KAEGRYICS 254 (337)
T ss_dssp SCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHHHHCT--TCCEEEEEC
T ss_pred CCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHHhcCc--ccCceEEEe
Confidence 432221111110 0 0111112234789999999999998764 246776543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=188.16 Aligned_cols=234 Identities=14% Similarity=0.070 Sum_probs=162.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEE-EecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIM-HLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~-~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++++|||||+|+||.++++.|+++| ++|++++|+....+.+.+.+.. .+.++.++ .+|++|.++++++++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---- 82 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---- 82 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT----
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc----
Confidence 4678999999999999999999999999 5999999997766555444321 13467888 799999988776654
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||||||..... +++++.+++|+.++.++++++.+. .+ .++||++||...+....... +
T Consensus 83 ---~~d~vih~A~~~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~---~~--~~~iv~~SS~~~~~~~~~~~-~- 144 (342)
T 1y1p_A 83 ---GAAGVAHIASVVSFS--------NKYDEVVTPAIGGTLNALRAAAAT---PS--VKRFVLTSSTVSALIPKPNV-E- 144 (342)
T ss_dssp ---TCSEEEECCCCCSCC--------SCHHHHHHHHHHHHHHHHHHHHTC---TT--CCEEEEECCGGGTCCCCTTC-C-
T ss_pred ---CCCEEEEeCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHhC---CC--CcEEEEeccHHHhcCCCCCC-C-
Confidence 699999999975321 356789999999999999988652 11 36999999987653110000 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCC----------------CCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEee
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGG----------------DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 304 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~ 304 (399)
..+..+.. +..+...|+.||.+.+.+++.++.++ .. ++++++|+
T Consensus 145 ------------------~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~-~~~~~~~r 204 (342)
T 1y1p_A 145 ------------------GIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN-KP-HFTLNAVL 204 (342)
T ss_dssp ------------------CCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-CC-SSEEEEEE
T ss_pred ------------------CcccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhc-CC-CceEEEEc
Confidence 00001110 23466789999999999999999987 33 89999999
Q ss_pred CCcccCCCCccccch-hh-hhhch-----h---hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceE
Q 015844 305 PGCIATTGLFREHIP-LF-RLLFP-----P---FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY 361 (399)
Q Consensus 305 PG~v~T~~~~~~~~~-~~-~~~~~-----~---~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~ 361 (399)
||.|.+++....... .. ..+.. . ........++.++|+|++++.++..+. .+|.+
T Consensus 205 p~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~ 269 (342)
T 1y1p_A 205 PNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ--IERRR 269 (342)
T ss_dssp ESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTT--CCSCE
T ss_pred CCceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCcCCEeEHHHHHHHHHHHHcCcc--cCCce
Confidence 999999854321100 00 00000 0 111112346789999999999987642 34543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=185.88 Aligned_cols=236 Identities=11% Similarity=0.033 Sum_probs=164.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH----HHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL----KAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~----~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.+.++++|||||+|+||.++++.|+++| +.|++++|+.. .++.+.+.+... +.++.++.+|++|.+++.++++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~- 101 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA- 101 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT-
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc-
Confidence 4667899999999999999999999999 59999998642 333333333211 2468899999999999888775
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
++|+||||||.... ..+.++++..+++|+.++.++++++.+. + .++||++||...+....
T Consensus 102 ------~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~SS~~~~~~~~--- 161 (352)
T 1sb8_A 102 ------GVDYVLHQAALGSV-----PRSINDPITSNATNIDGFLNMLIAARDA----K--VQSFTYAASSSTYGDHP--- 161 (352)
T ss_dssp ------TCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGGTTCC---
T ss_pred ------CCCEEEECCcccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEeccHHhcCCCC---
Confidence 69999999997421 1245678899999999999999998753 1 35999999987653110
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
..+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++......
T Consensus 162 ---------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~ 216 (352)
T 1sb8_A 162 ---------------------GLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRRQDPNG 216 (352)
T ss_dssp ---------------------CSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTTCCCCS
T ss_pred ---------------------CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEEECceeCcCCCCCc
Confidence 0011222233456789999999999999998876 899999999999988543210
Q ss_pred --chhh-hhhchhhHHHH---------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 318 --IPLF-RLLFPPFQKYI---------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 318 --~~~~-~~~~~~~~~~~---------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... ..+.......+ ...++.++|+|+++++++.... ...|..+.+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~ni~~ 276 (352)
T 1sb8_A 217 AYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGL-DARNQVYNIAV 276 (352)
T ss_dssp TTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCG-GGCSEEEEESC
T ss_pred chhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccc-cCCCceEEeCC
Confidence 0000 11111111100 1235789999999999887632 24566666554
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-22 Score=189.08 Aligned_cols=245 Identities=13% Similarity=0.188 Sum_probs=165.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChH--HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 88 SVIITGASSGLGLATAKALAET-GKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++|||||+|+||.++++.|+++ | ++|++++|+.. ..+.+ ..+. .+.++.++.+|++|.+++.+++++. +
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 73 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESL-SDIS-ESNRYNFEHADICDSAEITRIFEQY-----Q 73 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGG-TTTT-TCTTEEEEECCTTCHHHHHHHHHHH-----C
T ss_pred EEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCCCCchhhh-hhhh-cCCCeEEEECCCCCHHHHHHHHhhc-----C
Confidence 5999999999999999999998 7 59999988641 11111 1121 1357889999999999999988752 7
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC---CCCceEEEEeccccccCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~---~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||||||.... +.+.++++..+++|+.|++++++++.+.|..-+ ..+++||++||.+.+. .... ..
T Consensus 74 ~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g-~~~~---~~ 144 (361)
T 1kew_A 74 PDAVMHLAAESHV-----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYG-DLPH---PD 144 (361)
T ss_dssp CSEEEECCSCCCH-----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGC-CCCC---GG
T ss_pred CCEEEECCCCcCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhC-CCcc---cc
Confidence 9999999997521 234567889999999999999999999865311 0014999999976442 1000 00
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
. . .......+..+..+..+...|+.||++.+.+++.++.++ |+++++|+||.|.+++...... ..
T Consensus 145 ~-~---------~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~~~~~~~~-~~ 209 (361)
T 1kew_A 145 E-V---------ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYHFPEKL-IP 209 (361)
T ss_dssp G-S---------CTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCCTTSH-HH
T ss_pred c-c---------cccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCcEEEEeeceeECCCCCcccH-HH
Confidence 0 0 000000122333345567789999999999999999886 8999999999999985432110 00
Q ss_pred hhhchhhHH--H-------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQK--Y-------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~--~-------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..+...... . ....++.++|+|+.+++++... .+|..+.+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~~v~~~ 261 (361)
T 1kew_A 210 LVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEG---KAGETYNIGGH 261 (361)
T ss_dssp HHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCC
T ss_pred HHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCC---CCCCEEEecCC
Confidence 111111110 0 1123578999999999998754 46766666653
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=189.03 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=149.7
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+..++++++|||||+|+||.++++.|+++| +.|++++|+.....+..+.+ .++.++.+|++|.++++++++++
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~l----~~v~~~~~Dl~d~~~~~~~~~~~-- 87 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREVLPPV----AGLSVIEGSVTDAGLLERAFDSF-- 87 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCGGGSCSC----TTEEEEECCTTCHHHHHHHHHHH--
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccchhhhhcc----CCceEEEeeCCCHHHHHHHHhhc--
Confidence 347888999999999999999999999999 59999999643321111111 46888999999999999998865
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||||||..... +.++++ +++|+.+++++++++... + .++||++||.+.+. .....
T Consensus 88 ---~~D~vih~A~~~~~~------~~~~~~--~~~N~~~~~~l~~a~~~~----~--~~~iV~~SS~~~~~-~~~~~--- 146 (330)
T 2pzm_A 88 ---KPTHVVHSAAAYKDP------DDWAED--AATNVQGSINVAKAASKA----G--VKRLLNFQTALCYG-RPATV--- 146 (330)
T ss_dssp ---CCSEEEECCCCCSCT------TCHHHH--HHHHTHHHHHHHHHHHHH----T--CSEEEEEEEGGGGC-SCSSS---
T ss_pred ---CCCEEEECCccCCCc------cccChh--HHHHHHHHHHHHHHHHHc----C--CCEEEEecCHHHhC-CCccC---
Confidence 699999999975321 445666 999999999999998743 1 36999999987652 10000
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceE-EEEeeCCcccCCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA-FASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~-v~~v~PG~v~T~~~~~~~~~ 319 (399)
..+..+.. .+...|+.+|++.+.+++.+ ++ ....|| ++.+.||. .|..+ .....
T Consensus 147 ------------------~~~~~E~~--~~~~~Y~~sK~~~e~~~~~~--~~-~~~~iR~~~v~gp~~-~~~~~-~~~~~ 201 (330)
T 2pzm_A 147 ------------------PIPIDSPT--APFTSYGISKTAGEAFLMMS--DV-PVVSLRLANVTGPRL-AIGPI-PTFYK 201 (330)
T ss_dssp ------------------SBCTTCCC--CCCSHHHHHHHHHHHHHHTC--SS-CEEEEEECEEECTTC-CSSHH-HHHHH
T ss_pred ------------------CCCcCCCC--CCCChHHHHHHHHHHHHHHc--CC-CEEEEeeeeeECcCC-CCCHH-HHHHH
Confidence 00111111 24568999999999888766 33 223455 45555653 22211 00000
Q ss_pred hhhhhchhhH-HHHhcCCCChHHHHH-HHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLLFPPFQ-KYITKGYVSEDEAGK-RLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~~~~~~-~~~~~~~~~pee~a~-~v~~l~~~~~~~~~G~~~~~dg 366 (399)
........+. .. ...++.++|+|+ ++++++..+. |..+.+++
T Consensus 202 ~~~~~~~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~~----g~~~~v~~ 245 (330)
T 2pzm_A 202 RLKAGQKCFCSDT-VRDFLDMSDFLAIADLSLQEGRP----TGVFNVST 245 (330)
T ss_dssp HHHTTCCCCEESC-EECEEEHHHHHHHHHHHTSTTCC----CEEEEESC
T ss_pred HHHcCCEEeCCCC-EecceeHHHHHHHHHHHHhhcCC----CCEEEeCC
Confidence 0000000000 00 234689999999 9999998743 66666665
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=187.90 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=161.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||+|+||.++++.|+++| +.|++++|+........+.+. .+.++.++.+|++|.+++.++++.+
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~---- 79 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETAR-VADGMQSEIGDIRDQNKLLESIREF---- 79 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTT-TTTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCCcccchhhHhhc-cCCceEEEEccccCHHHHHHHHHhc----
Confidence 3578899999999999999999999999 599999998654433333332 2356889999999999999998865
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++|+||||||.... +.+.++++..+++|+.|+.++++++.+. . . .++||++||...+... ..
T Consensus 80 -~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~--~~~~v~~SS~~vyg~~-~~------ 141 (357)
T 1rkx_A 80 -QPEIVFHMAAQPLV-----RLSYSEPVETYSTNVMGTVYLLEAIRHV-G--G--VKAVVNITSDKCYDNK-EW------ 141 (357)
T ss_dssp -CCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHH-C--C--CCEEEEECCGGGBCCC-CS------
T ss_pred -CCCEEEECCCCccc-----ccchhCHHHHHHHHHHHHHHHHHHHHHh-C--C--CCeEEEecCHHHhCCC-Cc------
Confidence 69999999996311 2345778899999999999999998764 1 1 2599999998754211 00
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-----CCceEEEEeeCCcccCCCCcccc
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-----ETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-----~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
..+..+..+..+...|+.||.+.+.+++.++.++.. +.|+++++|+||.|.++......
T Consensus 142 ----------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~ 205 (357)
T 1rkx_A 142 ----------------IWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALD 205 (357)
T ss_dssp ----------------SSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSS
T ss_pred ----------------CCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccc
Confidence 001122223445678999999999999999988620 24899999999999998532110
Q ss_pred chhhhhhchhhH---------HHHhcCCCChHHHHHHHHHhhcC
Q 015844 318 IPLFRLLFPPFQ---------KYITKGYVSEDEAGKRLAQVVSD 352 (399)
Q Consensus 318 ~~~~~~~~~~~~---------~~~~~~~~~pee~a~~v~~l~~~ 352 (399)
.....+..... ......++..+|+|+.++.++..
T Consensus 206 -~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 248 (357)
T 1rkx_A 206 -RIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQK 248 (357)
T ss_dssp -CHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHhcCCCEEECCCCCeeccEeHHHHHHHHHHHHHh
Confidence 01111110000 00112357889999999988763
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=184.24 Aligned_cols=237 Identities=12% Similarity=0.097 Sum_probs=155.9
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHH-HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++.+.++++|||||+|+||.++++.|+++|. ..|+..+|.... .....+.+ ....++.++.+|++|.+++.++++..
T Consensus 19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~ 97 (346)
T 4egb_A 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSI-QDHPNYYFVKGEIQNGELLEHVIKER 97 (346)
T ss_dssp -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhh-ccCCCeEEEEcCCCCHHHHHHHHhhc
Confidence 4457788999999999999999999999993 266666665311 11111111 11247899999999999999998864
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
++|+|||+||.... ..+.++++..+++|+.++.++++++... + .++||++||...+....
T Consensus 98 -----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~----~--~~~~v~~SS~~vy~~~~---- 157 (346)
T 4egb_A 98 -----DVQVIVNFAAESHV-----DRSIENPIPFYDTNVIGTVTLLELVKKY----P--HIKLVQVSTDEVYGSLG---- 157 (346)
T ss_dssp -----TCCEEEECCCCC--------------CHHHHHHTHHHHHHHHHHHHS----T--TSEEEEEEEGGGGCCCC----
T ss_pred -----CCCEEEECCcccch-----hhhhhCHHHHHHHHHHHHHHHHHHHHhc----C--CCEEEEeCchHHhCCCC----
Confidence 69999999998632 2245677889999999999999988654 2 25899999986552110
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
...+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++......
T Consensus 158 -------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~- 213 (346)
T 4egb_A 158 -------------------KTGRFTEETPLAPNSPYSSSKASADMIALAYYKTY----QLPVIVTRCSNNYGPYQYPEK- 213 (346)
T ss_dssp -------------------SSCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCCTTS-
T ss_pred -------------------cCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeecceeCcCCCccc-
Confidence 01122233345566789999999999999998875 899999999999887442211
Q ss_pred hhhhhhch-hhHHH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 319 PLFRLLFP-PFQKY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 319 ~~~~~~~~-~~~~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
....+.. ..... ....++.++|+|+++++++..+. .|..+.+.+
T Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~g~~~~i~~ 267 (346)
T 4egb_A 214 -LIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR---VGEVYNIGG 267 (346)
T ss_dssp -HHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC---TTCEEEECC
T ss_pred -hHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC---CCCEEEECC
Confidence 1111110 00000 01124568999999999998754 566665555
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=185.93 Aligned_cols=229 Identities=15% Similarity=0.083 Sum_probs=153.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHH--cCCcEEEEeecChHHHHHH---H----HHhccCCCcEEEEEecCCCHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAE--TGKWHIIMACRDFLKAERA---A----KSAGMAKENYTIMHLDLASLDSVR 152 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~--~Ga~~vv~~~r~~~~~~~~---~----~~~~~~~~~~~~~~~Dvs~~~~v~ 152 (399)
+.+++++||||||+|+||.++++.|++ .| +.|++++|+....... . ......+.++.++.+|++|.++++
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHH
Confidence 367889999999999999999999999 89 5999999865411100 0 001112346789999999999988
Q ss_pred HHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccC
Q 015844 153 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (399)
Q Consensus 153 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~ 232 (399)
++ ...++|+||||||... .+.++++..+++|+.|+.++++++... +++||++||...+.
T Consensus 85 ~~------~~~~~D~vih~A~~~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~~-------~~~~V~~SS~~vyg- 143 (362)
T 3sxp_A 85 RL------EKLHFDYLFHQAAVSD-------TTMLNQELVMKTNYQAFLNLLEIARSK-------KAKVIYASSAGVYG- 143 (362)
T ss_dssp HH------TTSCCSEEEECCCCCG-------GGCCCHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEEEEGGGGC-
T ss_pred Hh------hccCCCEEEECCccCC-------ccccCHHHHHHHHHHHHHHHHHHHHHc-------CCcEEEeCcHHHhC-
Confidence 76 2357999999999642 245678899999999999999988432 24799999965442
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
... .+..+..+..+...|+.||.+.+.+++.++.+ ++++.|+|+.|..|.
T Consensus 144 ~~~------------------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~~~~~lR~~~v~Gp~ 193 (362)
T 3sxp_A 144 NTK------------------------APNVVGKNESPENVYGFSKLCMDEFVLSHSND------NVQVGLRYFNVYGPR 193 (362)
T ss_dssp SCC------------------------SSBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT------SCEEEEEECSEESTT
T ss_pred CCC------------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHhcc------CCEEEEEeCceeCcC
Confidence 110 01222334455678999999999988776654 677778888887764
Q ss_pred Cccccc--hhhhhhch-hhHHH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 313 LFREHI--PLFRLLFP-PFQKY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 313 ~~~~~~--~~~~~~~~-~~~~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
...... .....+.. ..... ....++.++|+|+++++++..+ .+| .+.+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~---~~g-~~~i~~ 255 (362)
T 3sxp_A 194 EFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQ---KSG-VYNVGY 255 (362)
T ss_dssp CGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCS---SCE-EEEESC
T ss_pred CCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcC---CCC-EEEeCC
Confidence 322110 00001100 00000 0122567999999999999875 357 554444
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=177.45 Aligned_cols=217 Identities=15% Similarity=0.105 Sum_probs=151.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++++|||||+|+||+++++.|+++ | ++|++++|+..+.+.. +.++.++.+|++|.++++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~----- 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ----- 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT-----
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcCCCchhhc-------CCCeeEEEecCCCHHHHHHHHc-----
Confidence 35689999999999999999999999 7 5999999987654432 2356788999999999888875
Q ss_pred CCCccEEEecCcccCCCCC--------CCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 162 GRPLDVLVCNAAVYLPTAK--------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~--------~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
.+|+||||||....... ..+...+++++.+++|+.++.++++++.... .++||++||..+....
T Consensus 69 --~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~iv~~SS~~~~~~~ 140 (253)
T 1xq6_A 69 --GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG------VKHIVVVGSMGGTNPD 140 (253)
T ss_dssp --TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT------CSEEEEEEETTTTCTT
T ss_pred --CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC------CCEEEEEcCccCCCCC
Confidence 59999999997532110 1122345566789999999999998876541 2599999998764200
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCC--hhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD--GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
.+.. +...|+.+|.+++.+++ + .|+++++|+||.+.++
T Consensus 141 --------------------------------~~~~~~~~~~y~~sK~~~e~~~~----~----~~i~~~~vrpg~v~~~ 180 (253)
T 1xq6_A 141 --------------------------------HPLNKLGNGNILVWKRKAEQYLA----D----SGTPYTIIRAGGLLDK 180 (253)
T ss_dssp --------------------------------CGGGGGGGCCHHHHHHHHHHHHH----T----SSSCEEEEEECEEECS
T ss_pred --------------------------------CccccccchhHHHHHHHHHHHHH----h----CCCceEEEecceeecC
Confidence 0111 12358889999887764 1 4899999999999987
Q ss_pred CCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..... .........+.. ....++.++|+|+.+++++..+. ..|+.+.+++
T Consensus 181 ~~~~~--~~~~~~~~~~~~-~~~~~~~~~Dva~~~~~~~~~~~--~~g~~~~i~~ 230 (253)
T 1xq6_A 181 EGGVR--ELLVGKDDELLQ-TDTKTVPRADVAEVCIQALLFEE--AKNKAFDLGS 230 (253)
T ss_dssp CSSSS--CEEEESTTGGGG-SSCCEEEHHHHHHHHHHHTTCGG--GTTEEEEEEE
T ss_pred Ccchh--hhhccCCcCCcC-CCCcEEcHHHHHHHHHHHHcCcc--ccCCEEEecC
Confidence 43211 000000000000 12346799999999999998754 3677666655
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=181.98 Aligned_cols=170 Identities=11% Similarity=-0.004 Sum_probs=129.9
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+.++|+||||||+|+||.++++.|+++| +.|++++|+... .++.++.+|++|.+++.++++
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~~~---- 76 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG------------TGGEEVVGSLEDGQALSDAIM---- 76 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS------------SCCSEEESCTTCHHHHHHHHT----
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC------------CCccEEecCcCCHHHHHHHHh----
Confidence 346788999999999999999999999999 599999998643 356788999999999888775
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+|||+|+... .+.+.++..+++|+.++.++++++... + .++||++||...+....
T Consensus 77 ---~~d~vih~A~~~~-------~~~~~~~~~~~~nv~~~~~ll~a~~~~----~--~~~~V~~SS~~vyg~~~------ 134 (347)
T 4id9_A 77 ---GVSAVLHLGAFMS-------WAPADRDRMFAVNVEGTRRLLDAASAA----G--VRRFVFASSGEVYPENR------ 134 (347)
T ss_dssp ---TCSEEEECCCCCC-------SSGGGHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGTTTTS------
T ss_pred ---CCCEEEECCcccC-------cchhhHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEECCHHHhCCCC------
Confidence 6999999999752 245667899999999999999987652 2 35999999976552100
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 309 (399)
....+..+..+..+...|+.+|.+.+.+++.++.+. |+++++|+|+.|.
T Consensus 135 ----------------~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~ 183 (347)
T 4id9_A 135 ----------------PEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSG----AMETVILRFSHTQ 183 (347)
T ss_dssp ----------------CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS----SSEEEEEEECEEE
T ss_pred ----------------CCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHhc----CCceEEEccceEe
Confidence 001122333455567789999999999999888774 8999999999997
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-21 Score=181.49 Aligned_cols=237 Identities=10% Similarity=0.016 Sum_probs=163.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-----CCcEEEEEecCCCHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-----KENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
+.++++++|||||+|+||.++++.|+++| +.|++++|+..........+... ..++.++.+|++|.+++.++++
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 45678999999999999999999999999 59999999653322222222111 1468999999999998887775
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
++|+|||+||.... ..+.+++...+++|+.++.++++++...- .++||++||...+... .
T Consensus 100 -------~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~~------~~~~v~~SS~~vyg~~-~- 159 (351)
T 3ruf_A 100 -------GVDHVLHQAALGSV-----PRSIVDPITTNATNITGFLNILHAAKNAQ------VQSFTYAASSSTYGDH-P- 159 (351)
T ss_dssp -------TCSEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHTT------CSEEEEEEEGGGGTTC-C-
T ss_pred -------CCCEEEECCccCCc-----chhhhCHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEEecHHhcCCC-C-
Confidence 69999999997422 22456778899999999999999886531 2499999998765211 0
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
..+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.....
T Consensus 160 ----------------------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~ 213 (351)
T 3ruf_A 160 ----------------------ALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY----GFKTIGLRYFNVFGRRQDPN 213 (351)
T ss_dssp ----------------------CSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECSEESTTCCCC
T ss_pred ----------------------CCCCccCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeeCceeCcCCCCC
Confidence 0122233344556789999999999999998876 89999999999988743221
Q ss_pred cc--hhhhhhc-hhhHHHH---------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 317 HI--PLFRLLF-PPFQKYI---------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 317 ~~--~~~~~~~-~~~~~~~---------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. .....+. ......+ ...++.++|+|++++.++.... ...|..+.+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~ni~~ 274 (351)
T 3ruf_A 214 GAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD-SAKDNIYNVAV 274 (351)
T ss_dssp STTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCG-GGCSEEEEESC
T ss_pred cchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhcc-ccCCCEEEeCC
Confidence 00 0001111 1111100 1124679999999999887632 24566665544
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=181.20 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=160.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHH-HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 87 GSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+++|||||+|+||.++++.|+++ | +.|++++|+... .......+. +.++.++.+|++|.+++.++++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~------- 74 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEAIL--GDRVELVVGDIADAELVDKLAA------- 74 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGGGC--SSSEEEEECCTTCHHHHHHHHT-------
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCChhHHhhhc--cCCeEEEECCCCCHHHHHHHhh-------
Confidence 68999999999999999999999 7 599999986421 011111121 2578899999999999888775
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
.+|+||||||.... +.+.++++..+++|+.|+.++++++.+. +++||++||...+... ....|.
T Consensus 75 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-------~~~~v~~SS~~vyg~~-~~~~~~--- 138 (348)
T 1oc2_A 75 KADAIVHYAAESHN-----DNSLNDPSPFIHTNFIGTYTLLEAARKY-------DIRFHHVSTDEVYGDL-PLREDL--- 138 (348)
T ss_dssp TCSEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHH-------TCEEEEEEEGGGGCCB-CCGGGS---
T ss_pred cCCEEEECCcccCc-----cchhhCHHHHHHHHHHHHHHHHHHHHHh-------CCeEEEecccceeCCC-cccccc---
Confidence 46999999997521 2245678899999999999999999875 1499999998654211 000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
.+.......+..+..+..+...|+.||.+.+.+++.++.++ |+++++|+||.|.+++...... ....
T Consensus 139 --------~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilrp~~v~G~~~~~~~~-~~~~ 205 (348)
T 1oc2_A 139 --------PGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQHIEKF-IPRQ 205 (348)
T ss_dssp --------TTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTCCTTSH-HHHH
T ss_pred --------cccccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeceeeCCCCCccch-HHHH
Confidence 00000001123333345566789999999999999998886 8999999999999885422110 0011
Q ss_pred hchhhHHH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 324 LFPPFQKY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 324 ~~~~~~~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
+....... ....++.++|+|+.+++++..+ .+|..+.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~~i~~ 254 (348)
T 1oc2_A 206 ITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG---RMGETYLIGA 254 (348)
T ss_dssp HHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHC---CTTCEEEECC
T ss_pred HHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCC---CCCCeEEeCC
Confidence 11111100 1123678999999999998754 3566666655
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=176.98 Aligned_cols=236 Identities=11% Similarity=0.026 Sum_probs=153.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH-HHHHHhc----cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~-~~~~~~~----~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+|++|||||+|+||.++++.|+++| ++|++++|+..... ...+.+. ..+.++.++.+|++|.+++.++++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV-- 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH--
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc--
Confidence 3689999999999999999999999 59999999764311 1111111 11356888999999999999998865
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||||||.... ..+.++++..+++|+.++.++++++.+...+. .++||++||.+.+... .
T Consensus 78 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~iv~~SS~~v~g~~-~----- 140 (372)
T 1db3_A 78 ---QPDEVYNLGAMSHV-----AVSFESPEYTADVDAMGTLRLLEAIRFLGLEK---KTRFYQASTSELYGLV-Q----- 140 (372)
T ss_dssp ---CCSEEEECCCCCTT-----TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGGTTC-C-----
T ss_pred ---CCCEEEECCcccCc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCCC---CcEEEEeCChhhhCCC-C-----
Confidence 69999999997532 23556788899999999999999998765431 2699999997665211 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-h
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-~ 319 (399)
..+..+..+..+...|+.||++.+.+++.++.++ ++.+..+.|..+..+....... .
T Consensus 141 ------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~r~~~~~gp~~~~~~~~~ 198 (372)
T 1db3_A 141 ------------------EIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPRRGETFVTR 198 (372)
T ss_dssp ------------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHHH
T ss_pred ------------------CCCCCccCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCeEEEEECCccCCCCCCcchhh
Confidence 0112222334456789999999999999999886 6777777776665543211110 0
Q ss_pred hh-hhhchhhHH----------HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LF-RLLFPPFQK----------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~-~~~~~~~~~----------~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. ..+...... .....++..+|+|++++.++..+. .+.|...++
T Consensus 199 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~---~~~~ni~~~ 253 (372)
T 1db3_A 199 KITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ---PEDFVIATG 253 (372)
T ss_dssp HHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS---CCCEEECCC
T ss_pred HHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcCC---CceEEEcCC
Confidence 00 000000000 001235789999999999886543 345543333
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=183.19 Aligned_cols=223 Identities=12% Similarity=0.097 Sum_probs=157.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+|+||.++++.|+++| +.|++++|+....... ....+.++.+|++|.+ +.++++ . |
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~~~~~~~~~Dl~d~~-~~~~~~-------~-d 64 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRREF------VNPSAELHVRDLKDYS-WGAGIK-------G-D 64 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSCCGGG------SCTTSEEECCCTTSTT-TTTTCC-------C-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCCchhh------cCCCceEEECccccHH-HHhhcC-------C-C
Confidence 479999999999999999999999 5999999875432211 1346788999999987 554432 3 9
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+||.... ..+.++++..+++|+.++.++++++... + .++||++||...+...
T Consensus 65 ~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~iv~~SS~~vyg~~------------- 120 (312)
T 3ko8_A 65 VVFHFAANPEV-----RLSTTEPIVHFNENVVATFNVLEWARQT----G--VRTVVFASSSTVYGDA------------- 120 (312)
T ss_dssp EEEECCSSCSS-----SGGGSCHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEEEEGGGGCSC-------------
T ss_pred EEEECCCCCCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEeCcHHHhCCC-------------
Confidence 99999996422 3467788999999999999999988543 1 2599999998765211
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
...+..+..+..+...|+.||.+.+.+++.++.++ |+++++|+||.|.+++....... ..+..
T Consensus 121 -----------~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~g~~~~~~~~~--~~~~~ 183 (312)
T 3ko8_A 121 -----------DVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLF----GVRCLAVRYANVVGPRLRHGVIY--DFIMK 183 (312)
T ss_dssp -----------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCSSHHH--HHHHH
T ss_pred -----------CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccccCcCCCCChHH--HHHHH
Confidence 01122233445567789999999999999999886 89999999999999854322111 11111
Q ss_pred hhHH----------HHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCC
Q 015844 327 PFQK----------YITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNK 366 (399)
Q Consensus 327 ~~~~----------~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg 366 (399)
.... .....++.++|+|+++++++..+ .....|..+.+.+
T Consensus 184 ~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~ 234 (312)
T 3ko8_A 184 LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGN 234 (312)
T ss_dssp HHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESC
T ss_pred HHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEcC
Confidence 1110 01123567999999999998761 1224566666554
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=174.21 Aligned_cols=216 Identities=12% Similarity=0.085 Sum_probs=151.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+|+||+++++.|+++| ++|++++|+..+... ...++.++.+|++|.+++.++++ .+|
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~-------~~d 69 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKI-------ENEHLKVKKADVSSLDEVCEVCK-------GAD 69 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCC-------CCTTEEEECCCTTCHHHHHHHHT-------TCS
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchh-------ccCceEEEEecCCCHHHHHHHhc-------CCC
Confidence 689999999999999999999999 599999999765321 12578899999999999988876 599
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||.... . ...+++|+.++.++++++... + .++||++||.....+...
T Consensus 70 ~vi~~a~~~~~-------~----~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~~~~~~~~----------- 121 (227)
T 3dhn_A 70 AVISAFNPGWN-------N----PDIYDETIKVYLTIIDGVKKA----G--VNRFLMVGGAGSLFIAPG----------- 121 (227)
T ss_dssp EEEECCCC-----------------CCSHHHHHHHHHHHHHHHT----T--CSEEEEECCSTTSEEETT-----------
T ss_pred EEEEeCcCCCC-------C----hhHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCChhhccCCCC-----------
Confidence 99999986421 1 126889999999998887553 2 249999999876542100
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
...+..+..+...|+.+|.+.+.+.+.++.+ .|+++++++||.+.++............ .
T Consensus 122 --------------~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~----~~~~~~ilrp~~v~g~~~~~~~~~~~~~--~ 181 (227)
T 3dhn_A 122 --------------LRLMDSGEVPENILPGVKALGEFYLNFLMKE----KEIDWVFFSPAADMRPGVRTGRYRLGKD--D 181 (227)
T ss_dssp --------------EEGGGTTCSCGGGHHHHHHHHHHHHHTGGGC----CSSEEEEEECCSEEESCCCCCCCEEESS--B
T ss_pred --------------CccccCCcchHHHHHHHHHHHHHHHHHHhhc----cCccEEEEeCCcccCCCccccceeecCC--C
Confidence 0001112345678999999988887777654 4899999999999876432211110000 0
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+.......++.++|+|+.++.++.++.. .|+-+...++
T Consensus 182 ~~~~~~~~~~i~~~Dva~ai~~~l~~~~~--~g~~~~~~~~ 220 (227)
T 3dhn_A 182 MIVDIVGNSHISVEDYAAAMIDELEHPKH--HQERFTIGYL 220 (227)
T ss_dssp CCCCTTSCCEEEHHHHHHHHHHHHHSCCC--CSEEEEEECC
T ss_pred cccCCCCCcEEeHHHHHHHHHHHHhCccc--cCcEEEEEee
Confidence 00000013367899999999999988753 5666655553
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=173.02 Aligned_cols=197 Identities=16% Similarity=0.230 Sum_probs=146.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~id 166 (399)
++|||||+|+||+++++.|+++| ++|++++|+..+.+.. .++.++.+|++| .+++.++++ ++|
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~-------~~d 65 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQY--------NNVKAVHFDVDWTPEEMAKQLH-------GMD 65 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCCC--------TTEEEEECCTTSCHHHHHTTTT-------TCS
T ss_pred eEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhhc--------CCceEEEecccCCHHHHHHHHc-------CCC
Confidence 69999999999999999999999 5999999997543221 468899999999 888877664 699
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||... ...+++|+.++.++++++.. .+ .++||++||..+....
T Consensus 66 ~vi~~ag~~~-------------~~~~~~n~~~~~~l~~a~~~----~~--~~~iv~~SS~~~~~~~------------- 113 (219)
T 3dqp_A 66 AIINVSGSGG-------------KSLLKVDLYGAVKLMQAAEK----AE--VKRFILLSTIFSLQPE------------- 113 (219)
T ss_dssp EEEECCCCTT-------------SSCCCCCCHHHHHHHHHHHH----TT--CCEEEEECCTTTTCGG-------------
T ss_pred EEEECCcCCC-------------CCcEeEeHHHHHHHHHHHHH----hC--CCEEEEECcccccCCC-------------
Confidence 9999999853 12688999999999988743 22 3599999997665211
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
+..+ .+..+...|+.+|.+.+.+.+ +..|+++++|+||.+.++...... ...
T Consensus 114 --------------~~~e-~~~~~~~~Y~~sK~~~e~~~~-------~~~~i~~~ilrp~~v~g~~~~~~~-~~~----- 165 (219)
T 3dqp_A 114 --------------KWIG-AGFDALKDYYIAKHFADLYLT-------KETNLDYTIIQPGALTEEEATGLI-DIN----- 165 (219)
T ss_dssp --------------GCCS-HHHHHTHHHHHHHHHHHHHHH-------HSCCCEEEEEEECSEECSCCCSEE-EES-----
T ss_pred --------------cccc-cccccccHHHHHHHHHHHHHH-------hccCCcEEEEeCceEecCCCCCcc-ccC-----
Confidence 0000 112346789999999888775 235999999999999886432211 110
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.....++.++|+|+.+++++.++. ..|+.+.+++
T Consensus 166 ----~~~~~~i~~~Dva~~i~~~l~~~~--~~g~~~~i~~ 199 (219)
T 3dqp_A 166 ----DEVSASNTIGDVADTIKELVMTDH--SIGKVISMHN 199 (219)
T ss_dssp ----SSCCCCEEHHHHHHHHHHHHTCGG--GTTEEEEEEE
T ss_pred ----CCcCCcccHHHHHHHHHHHHhCcc--ccCcEEEeCC
Confidence 122347899999999999998864 3477777644
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=180.50 Aligned_cols=203 Identities=13% Similarity=0.087 Sum_probs=136.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH-----------------HHHHHhccCCCcEEEEEecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-----------------RAAKSAGMAKENYTIMHLDL 145 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~Dv 145 (399)
..++.++|||||+|.||.++++.|+++| +.|++++|...... ...+.....+.++.++.+|+
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl 86 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDI 86 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCC
Confidence 4567899999999999999999999999 59999988643211 11111111235688899999
Q ss_pred CCHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 146 s~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
+|.+++.++++.. ++|+||||||....... ..+++++...+++|+.|+.++++++.+... ..+||++|
T Consensus 87 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~--~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~-----~~~~V~~S 154 (404)
T 1i24_A 87 CDFEFLAESFKSF-----EPDSVVHFGEQRSAPYS--MIDRSRAVYTQHNNVIGTLNVLFAIKEFGE-----ECHLVKLG 154 (404)
T ss_dssp TSHHHHHHHHHHH-----CCSEEEECCSCCCHHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHHCT-----TCEEEEEC
T ss_pred CCHHHHHHHHhcc-----CCCEEEECCCCCCccch--hhCccchhhhHHHHHHHHHHHHHHHHHhCC-----CcEEEEeC
Confidence 9999999988765 69999999997532111 125666778999999999999999876421 13999999
Q ss_pred ccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeC
Q 015844 226 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 305 (399)
Q Consensus 226 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~P 305 (399)
|.+.+. .... ......+.... .+. ......+..+...|+.||.+.+.+++.++.++ |+++++|+|
T Consensus 155 S~~vyg-~~~~-~~~E~~~~~~~---~~~------~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ivrp 219 (404)
T 1i24_A 155 TMGEYG-TPNI-DIEEGYITITH---NGR------TDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQ 219 (404)
T ss_dssp CGGGGC-CCSS-CBCSSEEEEEE---TTE------EEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEE
T ss_pred cHHHhC-CCCC-CCCcccccccc---ccc------cccccCCCCCCChhHHHHHHHHHHHHHHHHhc----CCeEEEEec
Confidence 976542 1100 00000000000 000 00000123455689999999999999998876 899999999
Q ss_pred CcccCCCC
Q 015844 306 GCIATTGL 313 (399)
Q Consensus 306 G~v~T~~~ 313 (399)
|.|.++..
T Consensus 220 ~~v~Gp~~ 227 (404)
T 1i24_A 220 GVVYGVKT 227 (404)
T ss_dssp CEEECSCC
T ss_pred ceeeCCCC
Confidence 99998743
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=177.19 Aligned_cols=220 Identities=12% Similarity=0.097 Sum_probs=154.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+|+||.++++.|+++| ..|++..|+....+. ....+.++.+|++| +++.++++ ++|
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~-------~~~~~~~~~~Dl~~-~~~~~~~~-------~~d 65 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEF-------VNEAARLVKADLAA-DDIKDYLK-------GAE 65 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGG-------SCTTEEEECCCTTT-SCCHHHHT-------TCS
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhh-------cCCCcEEEECcCCh-HHHHHHhc-------CCC
Confidence 479999999999999999999999 577776665432211 13468889999999 88777765 699
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+|+.... ..+.++++..+++|+.++.++++++... + .++||++||...+...
T Consensus 66 ~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~--~~~iv~~SS~~vyg~~------------- 121 (313)
T 3ehe_A 66 EVWHIAANPDV-----RIGAENPDEIYRNNVLATYRLLEAMRKA----G--VSRIVFTSTSTVYGEA------------- 121 (313)
T ss_dssp EEEECCCCCCC-----C-CCCCHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEECCGGGGCSC-------------
T ss_pred EEEECCCCCCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEeCchHHhCcC-------------
Confidence 99999996421 3466788999999999999999986543 2 3599999997765211
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
...+..+..+..+...|+.+|.+.+.+++.++.++ |+++++++||.|.++.......+ ..+..
T Consensus 122 -----------~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~~~--~~~~~ 184 (313)
T 3ehe_A 122 -----------KVIPTPEDYPTHPISLYGASKLACEALIESYCHTF----DMQAWIYRFANVIGRRSTHGVIY--DFIMK 184 (313)
T ss_dssp -----------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEECSCEESTTCCCSHHH--HHHHH
T ss_pred -----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc----CCCEEEEeeccccCcCCCcChHH--HHHHH
Confidence 01112233345567789999999999999999886 89999999999988743321111 11111
Q ss_pred hhHH-H---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 327 PFQK-Y---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 327 ~~~~-~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... . ....++.++|+|+++++++... ..|..+.+.+
T Consensus 185 ~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~---~~~~~~ni~~ 231 (313)
T 3ehe_A 185 LKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGD---ERVNIFNIGS 231 (313)
T ss_dssp HHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCC---SSEEEEECCC
T ss_pred HHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccC---CCCceEEECC
Confidence 1110 0 1123578899999999998732 3455665554
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-21 Score=179.43 Aligned_cols=228 Identities=18% Similarity=0.127 Sum_probs=145.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHH---HHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~---~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
||++|||||+|+||+++++.|+++| +.|+++.| +.+. .... ..+...+.++.++.+|++|.++++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAAIE----- 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHT-----
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHHHc-----
Confidence 5789999999999999999999999 59998888 6432 1111 1111111357888999999998888775
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhh-hhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEG-FELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|+|||+|+.. . .+.++ +++.+++|+.|++++++++.+.. + .++||++||.++..+.....
T Consensus 74 --~~d~vih~A~~~-~------~~~~~~~~~~~~~nv~gt~~l~~aa~~~~---~--~~~iV~~SS~~~~~~~~~~~--- 136 (322)
T 2p4h_X 74 --GCVGIFHTASPI-D------FAVSEPEEIVTKRTVDGALGILKACVNSK---T--VKRFIYTSSGSAVSFNGKDK--- 136 (322)
T ss_dssp --TCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHTTCS---S--CCEEEEEEEGGGTSCSSSCC---
T ss_pred --CCCEEEEcCCcc-c------CCCCChHHHHHHHHHHHHHHHHHHHHhcC---C--ccEEEEeccHHHcccCCCCC---
Confidence 589999999642 1 12222 45689999999999999886541 1 35999999987654221000
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCC---------CChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGD---------FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
.+..+... .+....|+.||.+.+.+++.++.+ .|+++++|+||.|.++
T Consensus 137 -------------------~~~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~g~ 193 (322)
T 2p4h_X 137 -------------------DVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ----NGIDVVTLILPFIVGR 193 (322)
T ss_dssp -------------------SEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEECEEESC
T ss_pred -------------------eecCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh----cCCcEEEEcCCceECC
Confidence 00001000 011126999999877777666544 3899999999999998
Q ss_pred CCccccchhhhhhchhhHH----HHhc--CCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 312 GLFREHIPLFRLLFPPFQK----YITK--GYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~----~~~~--~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
+.................. .+.. .++.++|+|+++++++..+. .+|.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~g~~~ 248 (322)
T 2p4h_X 194 FVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSV--PGGRYN 248 (322)
T ss_dssp CCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHHHSCC--CCEEEE
T ss_pred CCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHhhCcC--CCCCEE
Confidence 5432211111111000100 0101 36899999999999997643 578766
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=179.03 Aligned_cols=226 Identities=16% Similarity=0.167 Sum_probs=156.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHc---C---CcEEEEeecChH--HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAET---G---KWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~---G---a~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
++|||||+|+||.++++.|+++ | . +|++++|+.. ..+.+ +.+. .+.++.++.+|++|.+++++++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~-~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~---- 74 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPAD-EVIVLDSLTYAGNRANL-APVD-ADPRLRFVHGDIRDAGLLAREL---- 74 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCS-EEEEEECCCTTCCGGGG-GGGT-TCTTEEEEECCTTCHHHHHHHT----
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCce-EEEEEECCCccCchhhh-hhcc-cCCCeEEEEcCCCCHHHHHHHh----
Confidence 6999999999999999999996 6 5 8999888532 11111 1121 1357889999999999888776
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.++|+||||||.... +.+.++++..+++|+.++.++++++.+.. .++||++||.+.+... .
T Consensus 75 ---~~~d~Vih~A~~~~~-----~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~------~~~~v~~SS~~vyg~~-~---- 135 (337)
T 1r6d_A 75 ---RGVDAIVHFAAESHV-----DRSIAGASVFTETNVQGTQTLLQCAVDAG------VGRVVHVSTNQVYGSI-D---- 135 (337)
T ss_dssp ---TTCCEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHTT------CCEEEEEEEGGGGCCC-S----
T ss_pred ---cCCCEEEECCCccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEecchHHhCCC-C----
Confidence 379999999997521 12446778899999999999999987752 2599999998654210 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
..+..+..+..+...|+.||.+.+.+++.++.++ |+++++++||.|.+++......
T Consensus 136 -------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilrp~~v~G~~~~~~~~- 191 (337)
T 1r6d_A 136 -------------------SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQHPEKL- 191 (337)
T ss_dssp -------------------SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCTTSH-
T ss_pred -------------------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH----CCCEEEEEeeeeECCCCCCCCh-
Confidence 0112222344556789999999999999998876 8999999999999885422110
Q ss_pred hhhhhchhhHH--H-------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLLFPPFQK--Y-------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~~~~~~~--~-------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
....+...... . ....++.++|+|+++++++..+ .+|..+.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~~v~~ 244 (337)
T 1r6d_A 192 IPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGG---RAGEIYHIGG 244 (337)
T ss_dssp HHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEECC
T ss_pred HHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCC---CCCCEEEeCC
Confidence 00000000000 0 0123568999999999998754 3566666555
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=174.47 Aligned_cols=223 Identities=13% Similarity=0.019 Sum_probs=153.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHH-HHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.++++|||||+|+||.++++.|+++| +.|++++|+..... ...+.+. ...++.++.+|++|.+++.++++.+
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~----- 85 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA----- 85 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH-----
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHc-----
Confidence 46789999999999999999999999 59999999754311 1112221 1346889999999999999988865
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||.... ..+.++++..+++|+.++.++++++.+.-. .++||++||...+... .
T Consensus 86 ~~d~Vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-----~~~~v~~SS~~v~g~~-~-------- 146 (335)
T 1rpn_A 86 QPQEVYNLAAQSFV-----GASWNQPVTTGVVDGLGVTHLLEAIRQFSP-----ETRFYQASTSEMFGLI-Q-------- 146 (335)
T ss_dssp CCSEEEECCSCCCH-----HHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-----TSEEEEEEEGGGGCSC-S--------
T ss_pred CCCEEEECccccch-----hhhhhChHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEEeCHHHhCCC-C--------
Confidence 69999999997421 113456788999999999999999876411 1599999997654211 0
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
..+..+..+..+...|+.+|.+.+.+++.++.++ ++++..+.|+.+..+........ ..
T Consensus 147 ---------------~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~~~~~~~~--~~ 205 (335)
T 1rpn_A 147 ---------------AERQDENTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLRGIEFVT--RK 205 (335)
T ss_dssp ---------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHH--HH
T ss_pred ---------------CCCCCcccCCCCCChhHHHHHHHHHHHHHHHHHc----CCcEEEEeeCcccCCCCCCCcch--HH
Confidence 0011222333456689999999999999998776 78888899998877643221110 00
Q ss_pred hchhhHHH--------H------hcCCCChHHHHHHHHHhhcCCC
Q 015844 324 LFPPFQKY--------I------TKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 324 ~~~~~~~~--------~------~~~~~~pee~a~~v~~l~~~~~ 354 (399)
+...+... . ...++..+|+|++++.++..+.
T Consensus 206 ~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~ 250 (335)
T 1rpn_A 206 VTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK 250 (335)
T ss_dssp HHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC
Confidence 00111000 0 1125678999999999987653
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-20 Score=177.14 Aligned_cols=236 Identities=13% Similarity=0.048 Sum_probs=155.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-----HHHHHHHhccCCC-cEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-----~~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
|++|||||+|+||.++++.|+++| +.|++++|+... ++.....+...+. ++.++.+|++|.+++.++++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI-- 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhc--
Confidence 689999999999999999999999 599999987543 2111111111123 6888999999999999998875
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||||||.... ..+.++++..+++|+.++.++++++.+...+++. .++||++||...+... .
T Consensus 106 ---~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~-~~~~v~~SS~~vyg~~-~----- 170 (381)
T 1n7h_A 106 ---KPDEVYNLAAQSHV-----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR-TVKYYQAGSSEMFGST-P----- 170 (381)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGGGGTTS-C-----
T ss_pred ---CCCEEEECCcccCc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCC-ccEEEEeCcHHHhCCC-C-----
Confidence 69999999997522 1245678899999999999999999998765321 3699999998765211 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-h
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-~ 319 (399)
. +..+..+..+...|+.+|.+.+.+++.++.++ ++.+..+.|..+..+....... .
T Consensus 171 ------------------~-~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~r~~~~~gp~~~~~~~~~ 227 (381)
T 1n7h_A 171 ------------------P-PQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNHESPRRGENFVTR 227 (381)
T ss_dssp ------------------S-SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHHH
T ss_pred ------------------C-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeCceeCCCCCCcchhH
Confidence 0 12222344556789999999999999998876 5555555554443332211110 0
Q ss_pred h-hhhhchhhHH----------HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 L-FRLLFPPFQK----------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~-~~~~~~~~~~----------~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
. ...+...... .....++.++|+|+++++++..+. .|.|...++
T Consensus 228 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~---~~~~~i~~~ 282 (381)
T 1n7h_A 228 KITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK---PDDYVVATE 282 (381)
T ss_dssp HHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS---CCEEEECCS
T ss_pred HHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCC---CCeEEeeCC
Confidence 0 0000000000 011236789999999999997653 245443333
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=175.47 Aligned_cols=193 Identities=17% Similarity=0.156 Sum_probs=145.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||+|+||+++++.|+++| ++|++++|+.... + ..++.++.+|++|.+++.++++ .+|
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~------~---~~~~~~~~~Dl~d~~~~~~~~~-------~~d 65 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGA------A---EAHEEIVACDLADAQAVHDLVK-------DCD 65 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCC------C---CTTEEECCCCTTCHHHHHHHHT-------TCS
T ss_pred ceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCccc------c---CCCccEEEccCCCHHHHHHHHc-------CCC
Confidence 689999999999999999999999 6999999986421 1 1356888999999999888775 599
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||.. +.++++..+++|+.++.++++++.+. + .++||++||...+.....
T Consensus 66 ~vi~~a~~~---------~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~iv~~SS~~~~~~~~~----------- 119 (267)
T 3ay3_A 66 GIIHLGGVS---------VERPWNDILQANIIGAYNLYEAARNL----G--KPRIVFASSNHTIGYYPR----------- 119 (267)
T ss_dssp EEEECCSCC---------SCCCHHHHHHHTHHHHHHHHHHHHHT----T--CCEEEEEEEGGGSTTSBT-----------
T ss_pred EEEECCcCC---------CCCCHHHHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCCHHHhCCCCC-----------
Confidence 999999974 23456889999999999999988652 1 359999999876531100
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc-cCCCCccccchhhhhhc
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRLLF 325 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v-~T~~~~~~~~~~~~~~~ 325 (399)
..+..+..+..+...|+.+|.+.+.+++.++.+ .|+++++|+||.+ .+++. . .
T Consensus 120 ------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~~~~~~-----~--~--- 173 (267)
T 3ay3_A 120 ------------TTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHK----FDIETLNIRIGSCFPKPKD-----A--R--- 173 (267)
T ss_dssp ------------TSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHT----TCCCEEEEEECBCSSSCCS-----H--H---
T ss_pred ------------CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----cCCCEEEEeceeecCCCCC-----C--C---
Confidence 011222233445678999999999999888654 3899999999998 33310 0 0
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
....+++++|+|+.++.++..+.
T Consensus 174 ------~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 174 ------MMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp ------HHHHBCCHHHHHHHHHHHHHSSC
T ss_pred ------eeeccccHHHHHHHHHHHHhCCC
Confidence 11236799999999999988763
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-20 Score=176.97 Aligned_cols=235 Identities=10% Similarity=0.031 Sum_probs=157.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH-----HHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~-----~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++|||||+|+||.++++.|+++| +.|++++|+... ++.+.+.+.. .+.++.++.+|++|.+++.++++.+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-- 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc--
Confidence 689999999999999999999999 599999987532 1111110000 2346888999999999999998865
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||||||.... ..+.++++..+++|+.++.++++++.+...+. .++||++||...+....
T Consensus 102 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~---~~~iv~~SS~~~~~~~~------ 164 (375)
T 1t2a_A 102 ---KPTEIYNLGAQSHV-----KISFDLAEYTADVDGVGTLRLLDAVKTCGLIN---SVKFYQASTSELYGKVQ------ 164 (375)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGTCSCS------
T ss_pred ---CCCEEEECCCcccc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCCc---cceEEEecchhhhCCCC------
Confidence 69999999997421 12456788999999999999999998765421 25999999987652110
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-h
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-~ 319 (399)
..+..+..+..+...|+.||++.+.+++.++.++ ++.+..+.|+.+..+....... .
T Consensus 165 ------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~~~gp~~~~~~~~~ 222 (375)
T 1t2a_A 165 ------------------EIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPRRGANFVTR 222 (375)
T ss_dssp ------------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHHH
T ss_pred ------------------CCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEecccccCCCCCCCcchH
Confidence 0112222233456789999999999999999876 7888888888776653221111 0
Q ss_pred h-hhhhchhhHH-H---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 L-FRLLFPPFQK-Y---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~-~~~~~~~~~~-~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
. ...+...... . ....++.++|+|++++.++..+. .|.|...++
T Consensus 223 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~---~~~~ni~~~ 277 (375)
T 1t2a_A 223 KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE---PEDFVIATG 277 (375)
T ss_dssp HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS---CCCEEECCS
T ss_pred HHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCC---CceEEEeCC
Confidence 0 0000000000 0 01225679999999999987653 355544443
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=169.09 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=134.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+..|++|||||+|+||+++++.|+++|.++|++++|+.++++.. ...++.++.+|++|.++++++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~------- 87 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP------YPTNSQIIMGDVLNHAALKQAMQ------- 87 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS------CCTTEEEEECCTTCHHHHHHHHT-------
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc------ccCCcEEEEecCCCHHHHHHHhc-------
Confidence 44689999999999999999999999933999999987653321 23468899999999999988876
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
.+|+||||+|.. . + ...++.+++.+++.+ .++||++||...+.+......
T Consensus 88 ~~D~vv~~a~~~---------~---~-----------~~~~~~~~~~~~~~~--~~~iV~iSS~~~~~~~~~~~~----- 137 (236)
T 3qvo_A 88 GQDIVYANLTGE---------D---L-----------DIQANSVIAAMKACD--VKRLIFVLSLGIYDEVPGKFV----- 137 (236)
T ss_dssp TCSEEEEECCST---------T---H-----------HHHHHHHHHHHHHTT--CCEEEEECCCCC--------------
T ss_pred CCCEEEEcCCCC---------c---h-----------hHHHHHHHHHHHHcC--CCEEEEEecceecCCCCcccc-----
Confidence 589999999851 0 0 123567788887765 469999999876532100000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
...+.........|..+|..+ .+.||++++|+||++.|+.... ......
T Consensus 138 -----------------~~~~~~~~~~~~~~~~~~~~l------------~~~gi~~~~vrPg~i~~~~~~~-~~~~~~- 186 (236)
T 3qvo_A 138 -----------------EWNNAVIGEPLKPFRRAADAI------------EASGLEYTILRPAWLTDEDIID-YELTSR- 186 (236)
T ss_dssp ------------------------CGGGHHHHHHHHHH------------HTSCSEEEEEEECEEECCSCCC-CEEECT-
T ss_pred -----------------cchhhcccchHHHHHHHHHHH------------HHCCCCEEEEeCCcccCCCCcc-eEEecc-
Confidence 000001122344565554321 2459999999999998863321 100000
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.....+++++++|+|+.+++++++++.+. |+.+.+++.
T Consensus 187 -----~~~~~~~~i~~~DvA~~i~~ll~~~~~~~-g~~~~i~~~ 224 (236)
T 3qvo_A 187 -----NEPFKGTIVSRKSVAALITDIIDKPEKHI-GENIGINQP 224 (236)
T ss_dssp -----TSCCSCSEEEHHHHHHHHHHHHHSTTTTT-TEEEEEECS
T ss_pred -----CCCCCCcEECHHHHHHHHHHHHcCccccc-CeeEEecCC
Confidence 00112456899999999999999988665 666655553
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=175.40 Aligned_cols=225 Identities=13% Similarity=0.113 Sum_probs=153.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||+++++.|+++| ++|++++|...... +.+ ..++.++.+|++|.+++++++++. ++|+
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~---~~~---~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d~ 69 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGKR---ENV---PKGVPFFRVDLRDKEGVERAFREF-----RPTH 69 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEECCCSSCCG---GGS---CTTCCEECCCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCCcCch---hhc---ccCeEEEECCCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999999 59999988532110 011 134667899999999999888752 6999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+|+.... ..+.++++..+++|+.|++++++++... + .++||++||..+..+....
T Consensus 70 vi~~a~~~~~-----~~~~~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iv~~SS~~~~~g~~~~----------- 127 (311)
T 2p5y_A 70 VSHQAAQASV-----KVSVEDPVLDFEVNLLGGLNLLEACRQY----G--VEKLVFASTGGAIYGEVPE----------- 127 (311)
T ss_dssp EEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEHHHHHCCCCT-----------
T ss_pred EEECccccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCCChhhcCCCCC-----------
Confidence 9999997421 1345678899999999999999987642 1 2599999998333221000
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-hhhhhhch
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PLFRLLFP 326 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~ 326 (399)
..+..+..+..+...|+.||++.+.+++.++.++ |+++++|+||.|.+++...... .....+..
T Consensus 128 -----------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~ 192 (311)
T 2p5y_A 128 -----------GERAEETWPPRPKSPYAASKAAFEHYLSVYGQSY----GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAE 192 (311)
T ss_dssp -----------TCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCSSSTTHHHHHHHH
T ss_pred -----------CCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHc----CCCEEEEeeccccCcCCCCCCcCcHHHHHHH
Confidence 0011122233456689999999999999998875 8999999999999985432110 00011100
Q ss_pred -hhHHH--------------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 327 -PFQKY--------------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 327 -~~~~~--------------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..... ....++.++|+|+.+++++..+ |..+.+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~i~~ 242 (311)
T 2p5y_A 193 RVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL-----EGIYNVGT 242 (311)
T ss_dssp HHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC-----CEEEEESC
T ss_pred HHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC-----CCEEEeCC
Confidence 00100 0123567999999999998753 45555544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=163.77 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=143.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++++||||+|+||+++++.|+++| ++|++++|+..+... ....++.++.+|++|.+++.++++ .+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~------~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 68 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPS------EGPRPAHVVVGDVLQAADVDKTVA-------GQ 68 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCS------SSCCCSEEEESCTTSHHHHHHHHT-------TC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhccc------ccCCceEEEEecCCCHHHHHHHHc-------CC
Confidence 4789999999999999999999999 599999998754321 113468899999999999888765 58
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||.... . + + .++|+.++.++++++... + .++||++||...+... +
T Consensus 69 d~vi~~a~~~~~----~--~---~---~~~n~~~~~~~~~~~~~~----~--~~~~v~~Ss~~~~~~~-----~------ 119 (206)
T 1hdo_A 69 DAVIVLLGTRND----L--S---P---TTVMSEGARNIVAAMKAH----G--VDKVVACTSAFLLWDP-----T------ 119 (206)
T ss_dssp SEEEECCCCTTC----C--S---C---CCHHHHHHHHHHHHHHHH----T--CCEEEEECCGGGTSCT-----T------
T ss_pred CEEEECccCCCC----C--C---c---cchHHHHHHHHHHHHHHh----C--CCeEEEEeeeeeccCc-----c------
Confidence 999999997532 0 1 1 247888888888877653 1 2599999998654210 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCccc-CCCCccccchhhhhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIPLFRLL 324 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~-T~~~~~~~~~~~~~~ 324 (399)
....+...|+.+|.+++.+.+ + .|+++++|+||.+. ++ ....... .+
T Consensus 120 --------------------~~~~~~~~y~~~K~~~e~~~~----~----~~i~~~~lrp~~~~~~~-~~~~~~~---~~ 167 (206)
T 1hdo_A 120 --------------------KVPPRLQAVTDDHIRMHKVLR----E----SGLKYVAVMPPHIGDQP-LTGAYTV---TL 167 (206)
T ss_dssp --------------------CSCGGGHHHHHHHHHHHHHHH----H----TCSEEEEECCSEEECCC-CCSCCEE---ES
T ss_pred --------------------cccccchhHHHHHHHHHHHHH----h----CCCCEEEEeCCcccCCC-CCcceEe---cc
Confidence 000156789999999888763 2 38999999999983 33 2111111 00
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...+.+.+++++|+|+.+++++.++. .+|+.+.+++.
T Consensus 168 ----~~~~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~i~~g 204 (206)
T 1hdo_A 168 ----DGRGPSRVISKHDLGHFMLRCLTTDE--YDGHSTYPSHQ 204 (206)
T ss_dssp ----SSCSSCSEEEHHHHHHHHHHTTSCST--TTTCEEEEECC
T ss_pred ----cCCCCCCccCHHHHHHHHHHHhcCcc--ccccceeeecc
Confidence 01111357899999999999998864 57888777663
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=175.30 Aligned_cols=182 Identities=12% Similarity=0.089 Sum_probs=131.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH------HHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK------AERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~------~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++++|||||+|+||.++++.|+++| ++|++++|+... ..+..+.+.. .+.++.++.+|++|.++++++++..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999999999 589988875321 1111112211 2346788999999999998888752
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
++|+||||||..... .+.+++++.+++|+.++.++++++.. .+ .++||++||...+. ...
T Consensus 81 -----~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~iv~~SS~~~~g-~~~--- 140 (348)
T 1ek6_A 81 -----SFMAVIHFAGLKAVG-----ESVQKPLDYYRVNLTGTIQLLEIMKA----HG--VKNLVFSSSATVYG-NPQ--- 140 (348)
T ss_dssp -----CEEEEEECCSCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHH----TT--CCEEEEEEEGGGGC-SCS---
T ss_pred -----CCCEEEECCCCcCcc-----chhhchHHHHHHHHHHHHHHHHHHHH----hC--CCEEEEECcHHHhC-CCC---
Confidence 699999999975211 13467788999999999999987643 22 35999999976542 100
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCh-hhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
..+..+..+..+ ...|+.||.+.+.+++.++.+ ..++++++++|+.+..+
T Consensus 141 --------------------~~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~lR~~~v~G~ 191 (348)
T 1ek6_A 141 --------------------YLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA---DKTWNAVLLRYFNPTGA 191 (348)
T ss_dssp --------------------SSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH---CTTCEEEEEEECEEECC
T ss_pred --------------------CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc---CCCcceEEEeeccccCC
Confidence 011122222222 678999999999999998876 13699999999998766
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=179.35 Aligned_cols=224 Identities=13% Similarity=0.037 Sum_probs=152.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
...++++|||||+|+||.++++.|+++| ++|++++|+....... ...++.++.+|++|.+++.++++
T Consensus 26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~~~v~~~~~Dl~d~~~~~~~~~------ 92 (379)
T 2c5a_A 26 PSENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTE------DMFCDEFHLVDLRVMENCLKVTE------ 92 (379)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSCG------GGTCSEEEECCTTSHHHHHHHHT------
T ss_pred cccCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccchhh------ccCCceEEECCCCCHHHHHHHhC------
Confidence 3456899999999999999999999999 5999999975432110 12357889999999999888774
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++|+|||+||..... ..+.+++++.+++|+.++.++++++... + .++||++||...+... ....+..
T Consensus 93 -~~d~Vih~A~~~~~~----~~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~--~~~~V~~SS~~v~~~~-~~~~~~~- 159 (379)
T 2c5a_A 93 -GVDHVFNLAADMGGM----GFIQSNHSVIMYNNTMISFNMIEAARIN----G--IKRFFYASSACIYPEF-KQLETTN- 159 (379)
T ss_dssp -TCSEEEECCCCCCCH----HHHTTCHHHHHHHHHHHHHHHHHHHHHT----T--CSEEEEEEEGGGSCGG-GSSSSSS-
T ss_pred -CCCEEEECceecCcc----cccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEeehheeCCC-CCCCccC-
Confidence 699999999975211 1124567889999999999999988642 1 2599999997654211 0000000
Q ss_pred CccccccccCCCCCCCCCCCCCCC--CCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGG--DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~-- 318 (399)
.+..+.. +..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.......
T Consensus 160 -----------------~~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~G~~~~~~~~~~ 218 (379)
T 2c5a_A 160 -----------------VSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPFGTWKGGRE 218 (379)
T ss_dssp -----------------CEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCCSSSCC
T ss_pred -----------------CCcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH----CCCEEEEEeCceeCcCCCcccccc
Confidence 0011111 23345689999999999999998775 8999999999999874322100
Q ss_pred -hhhhhhchhhHH---H-------HhcCCCChHHHHHHHHHhhcCC
Q 015844 319 -PLFRLLFPPFQK---Y-------ITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 319 -~~~~~~~~~~~~---~-------~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.....+...... . ....++.++|+|+.+++++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~ 264 (379)
T 2c5a_A 219 KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264 (379)
T ss_dssp CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc
Confidence 000111111010 0 0123567999999999999765
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=174.79 Aligned_cols=218 Identities=15% Similarity=0.146 Sum_probs=120.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++|||||+|+||.++++.|+++| ++|++++|+... . + ++.+|++|.+++.++++.. ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~----------~--~--~~~~Dl~d~~~~~~~~~~~-----~~ 61 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR----------P--K--FEQVNLLDSNAVHHIIHDF-----QP 61 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC--------------------------------CHHHHHHH-----CC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC----------C--C--eEEecCCCHHHHHHHHHhh-----CC
Confidence 5789999999999999999999999 599999987533 0 1 6789999999999888765 69
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||.... ..+.+++++.+++|+.++.++++++.+. +++||++||...+.+.
T Consensus 62 d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~-------~~~~v~~SS~~v~~~~------------ 117 (315)
T 2ydy_A 62 HVIVHCAAERRP-----DVVENQPDAASQLNVDASGNLAKEAAAV-------GAFLIYISSDYVFDGT------------ 117 (315)
T ss_dssp SEEEECC------------------------CHHHHHHHHHHHHH-------TCEEEEEEEGGGSCSS------------
T ss_pred CEEEECCcccCh-----hhhhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEchHHHcCCC------------
Confidence 999999997532 2255678899999999999999998763 2499999998765310
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-hhhhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLL 324 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~~~ 324 (399)
..+..+..+..+...|+.+|.+.+.+++.++.++ ..+|++.|. |...++. ....+ .....
T Consensus 118 -------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~lR~~~v~-G~~~~~~--~~~~~~~~~~~ 178 (315)
T 2ydy_A 118 -------------NPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGA---AVLRIPILY-GEVEKLE--ESAVTVMFDKV 178 (315)
T ss_dssp -------------SCSBCTTSCCCCCSHHHHHHHHHHHHHHHHCTTC---EEEEECSEE-CSCSSGG--GSTTGGGHHHH
T ss_pred -------------CCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCe---EEEeeeeee-CCCCccc--ccHHHHHHHHH
Confidence 0112222233456789999999999998875443 244555544 4433310 01111 00000
Q ss_pred c---hh--hHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCC
Q 015844 325 F---PP--FQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNK 366 (399)
Q Consensus 325 ~---~~--~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg 366 (399)
. .. ........++.++|+|+.+++++.++ .....|..+.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~ 226 (315)
T 2ydy_A 179 QFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSG 226 (315)
T ss_dssp HCCSSCEEEECSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCC
T ss_pred HhcCCCeeeccCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcC
Confidence 0 00 00011234678999999999998753 1123455555554
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=174.87 Aligned_cols=224 Identities=16% Similarity=0.104 Sum_probs=146.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||+|+||.++++.|+++| ++|++++|+.....+ .+... .++.++.+|++|.++++++++.
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~l~~~-~~~~~~~~Dl~d~~~~~~~~~~----- 87 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRRE---HLKDH-PNLTFVEGSIADHALVNQLIGD----- 87 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGG---GSCCC-TTEEEEECCTTCHHHHHHHHHH-----
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccchh---hHhhc-CCceEEEEeCCCHHHHHHHHhc-----
Confidence 5678899999999999999999999999 599999997532111 11111 3678899999999999988875
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||..... +.++++ +++|+.++.++++++.+. + .++||++||...+. ..... +
T Consensus 88 ~~~D~vih~A~~~~~~------~~~~~~--~~~N~~~~~~l~~a~~~~----~--~~~iV~~SS~~~~g-~~~~~-~--- 148 (333)
T 2q1w_A 88 LQPDAVVHTAASYKDP------DDWYND--TLTNCVGGSNVVQAAKKN----N--VGRFVYFQTALCYG-VKPIQ-Q--- 148 (333)
T ss_dssp HCCSEEEECCCCCSCT------TCHHHH--HHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGGC-SCCCS-S---
T ss_pred cCCcEEEECceecCCC------ccCChH--HHHHHHHHHHHHHHHHHh----C--CCEEEEECcHHHhC-CCccc-C---
Confidence 2699999999975321 334555 999999999999998762 1 36999999976541 00000 0
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChh-hhHHHhHHHHHHHHHH-HHHhhccCCceEEEEeeCCcccCCCCccccch-
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLTMQE-FHRRFHEETGIAFASLYPGCIATTGLFREHIP- 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~-la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~- 319 (399)
..+..+.. .+. ..|+.+|.+.+.+++. ++ +++.|+|+.+..+.......+
T Consensus 149 ----------------~~~~~E~~--~p~~~~Y~~sK~~~E~~~~~s~~---------~~~ilR~~~v~gp~~~~~~~~~ 201 (333)
T 2q1w_A 149 ----------------PVRLDHPR--NPANSSYAISKSANEDYLEYSGL---------DFVTFRLANVVGPRNVSGPLPI 201 (333)
T ss_dssp ----------------SBCTTSCC--CCTTCHHHHHHHHHHHHHHHHTC---------CEEEEEESEEESTTCCSSHHHH
T ss_pred ----------------CCCcCCCC--CCCCCchHHHHHHHHHHHHhhhC---------CeEEEeeceEECcCCcCcHHHH
Confidence 00111111 233 6899999999888776 43 456777877766641111111
Q ss_pred hhhhhch---hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 LFRLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ~~~~~~~---~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
....... .+.......++.++|+|+.+++++..+. |..+.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~----g~~~~v~~ 247 (333)
T 2q1w_A 202 FFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVG----HGAYHFSS 247 (333)
T ss_dssp HHHHHHTTCCCEEEECEECEEEHHHHHHHHHHHHTTCC----CEEEECSC
T ss_pred HHHHHHcCCeeeCCCceEeeEEHHHHHHHHHHHHhcCC----CCEEEeCC
Confidence 0000000 0000112346789999999999998754 66666655
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-20 Score=173.57 Aligned_cols=220 Identities=16% Similarity=0.143 Sum_probs=147.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+|+||.++++.|+++| ++|++++|+....+. +. ..++.++.+|++|.+++.++++ ++|
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----l~--~~~~~~~~~Dl~d~~~~~~~~~-------~~d 79 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQR----LA--YLEPECRVAEMLDHAGLERALR-------GLD 79 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGGG----GG--GGCCEEEECCTTCHHHHHHHTT-------TCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhhh----hc--cCCeEEEEecCCCHHHHHHHHc-------CCC
Confidence 389999999999999999999999 599999998654322 11 1257889999999998887765 599
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+||... .+.+++++.+++|+.++.++++++.+.- .++||++||...+.....+.
T Consensus 80 ~vih~a~~~~-------~~~~~~~~~~~~n~~~~~~l~~a~~~~~------~~~~v~~SS~~~~~~~~~~~--------- 137 (342)
T 2x4g_A 80 GVIFSAGYYP-------SRPRRWQEEVASALGQTNPFYAACLQAR------VPRILYVGSAYAMPRHPQGL--------- 137 (342)
T ss_dssp EEEEC-------------------CHHHHHHHHHHHHHHHHHHHT------CSCEEEECCGGGSCCCTTSS---------
T ss_pred EEEECCccCc-------CCCCCHHHHHHHHHHHHHHHHHHHHHcC------CCeEEEECCHHhhCcCCCCC---------
Confidence 9999999742 1345678899999999999999988751 25999999987653110000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCh----hhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDG----AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.+ .+..+..+ ...|+.+|.+.+.+++.++. . |+++++|+||.|.+++..+.... .
T Consensus 138 -------------~~-~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~----~-g~~~~ilrp~~v~g~~~~~~~~~--~ 196 (342)
T 2x4g_A 138 -------------PG-HEGLFYDSLPSGKSSYVLCKWALDEQAREQAR----N-GLPVVIGIPGMVLGELDIGPTTG--R 196 (342)
T ss_dssp -------------CB-CTTCCCSSCCTTSCHHHHHHHHHHHHHHHHHH----T-TCCEEEEEECEEECSCCSSCSTT--H
T ss_pred -------------CC-CCCCCCCccccccChHHHHHHHHHHHHHHHhh----c-CCcEEEEeCCceECCCCccccHH--H
Confidence 00 11122233 66899999999999888774 3 89999999999998754110111 1
Q ss_pred hhchhhHHH------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 323 LLFPPFQKY------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 323 ~~~~~~~~~------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.+....... ....++.++|+|+.+++++..+.. |..+.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~---g~~~~v~~ 243 (342)
T 2x4g_A 197 VITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRI---GERYLLTG 243 (342)
T ss_dssp HHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHSCT---TCEEEECC
T ss_pred HHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCCCC---CceEEEcC
Confidence 110000000 011257899999999999976542 65666655
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=182.53 Aligned_cols=232 Identities=16% Similarity=0.097 Sum_probs=151.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH---HHHHHHHHhcc---------CCCcEEEEEecCCCHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGM---------AKENYTIMHLDLASLDS 150 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~Dvs~~~~ 150 (399)
...+++||||||+|+||.++++.|++.| ++|+++.|+.. ..+.+.+.+.. .+.++.++.+|++|.++
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 3457899999999999999999999999 59999999865 22333222211 13578999999999888
Q ss_pred HHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc
Q 015844 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~ 230 (399)
+. ..+++|+||||||... ..++++..+++|+.|+.++++++.+ . ..+||++||...
T Consensus 145 l~--------~~~~~d~Vih~A~~~~--------~~~~~~~~~~~Nv~g~~~l~~aa~~---~----~~~~v~~SS~~~- 200 (427)
T 4f6c_A 145 VV--------LPENMDTIIHAGARTD--------HFGDDDEFEKVNVQGTVDVIRLAQQ---H----HARLIYVSTISV- 200 (427)
T ss_dssp CC--------CSSCCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHH---T----TCEEEEEEEGGG-
T ss_pred CC--------CcCCCCEEEECCcccC--------CCCCHHHHHHHHHHHHHHHHHHHHh---c----CCcEEEECchHh-
Confidence 77 4568999999999752 2346788999999999999999876 1 259999999876
Q ss_pred cCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC---CCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCc
Q 015844 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGG---DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (399)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~ 307 (399)
|......+.. .+..+.. +..+...|+.||.+.+.+++.++. .|+++++|+||.
T Consensus 201 -G~~~~~~~~~------------------~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~ivRpg~ 256 (427)
T 4f6c_A 201 -GTYFDIDTED------------------VTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGN 256 (427)
T ss_dssp -GSEECSSCSC------------------CEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-----TTCCEEEEEECC
T ss_pred -CCCccCCCCC------------------ccccccccccCCCCCCchHHHHHHHHHHHHHHHH-----cCCCEEEEeCCe
Confidence 3211110000 0111111 123567899999999999888653 389999999999
Q ss_pred ccCCCCccccch------hhhhhchhhHH--------HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 308 IATTGLFREHIP------LFRLLFPPFQK--------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 308 v~T~~~~~~~~~------~~~~~~~~~~~--------~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
|.++........ ....+...... .....++.++|+|+++++++..+. .|..|.+++
T Consensus 257 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~---~g~~~~l~~ 326 (427)
T 4f6c_A 257 LTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYHVLS 326 (427)
T ss_dssp EESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCC---CCSEEEESC
T ss_pred eecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCC---CCCEEEecC
Confidence 988743321100 10111111000 011226788999999999998765 455555444
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=180.13 Aligned_cols=230 Identities=10% Similarity=0.073 Sum_probs=154.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.++++++|||||+|+||.++++.|+++| . .|++++|+..... +.+. ...++.++.+|++|.++++++++
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~---~~l~-~~~~v~~~~~Dl~d~~~l~~~~~----- 98 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLLSAEK---INVP-DHPAVRFSETSITDDALLASLQD----- 98 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEECCCTTCCG---GGSC-CCTTEEEECSCTTCHHHHHHCCS-----
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEECCCCCch---hhcc-CCCceEEEECCCCCHHHHHHHhh-----
Confidence 4678899999999999999999999999 6 8999998754321 1111 13568899999999988776654
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++|+|||+||.... ..+.++++..+++|+.++.++++++... .+ .++||++||...+. ....
T Consensus 99 --~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~---~~--~~~~V~~SS~~vyg-~~~~----- 160 (377)
T 2q1s_A 99 --EYDYVFHLATYHGN-----QSSIHDPLADHENNTLTTLKLYERLKHF---KR--LKKVVYSAAGCSIA-EKTF----- 160 (377)
T ss_dssp --CCSEEEECCCCSCH-----HHHHHCHHHHHHHHTHHHHHHHHHHTTC---SS--CCEEEEEEEC--------------
T ss_pred --CCCEEEECCCccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh---CC--CCeEEEeCCHHHcC-CCCC-----
Confidence 79999999997521 1234677889999999999999887421 02 25999999976542 1000
Q ss_pred CCccccccccCCCCCCCCCCCC--CCC---CC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC--
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMI--DGG---DF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL-- 313 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~-- 313 (399)
.+.. +.. +. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..
T Consensus 161 ------------------~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~~~ 218 (377)
T 2q1s_A 161 ------------------DDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH----QLPTVRARFQNVYGPGEIL 218 (377)
T ss_dssp ------------------------CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTCCT
T ss_pred ------------------CCcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCCCcc
Confidence 0011 111 22 345689999999999999998775 89999999999998754
Q ss_pred -------cccc--chhhhhhchhh-HHH---------HhcCCCChHHHHHH-HHHhhcCCCCCCCceEEccCC
Q 015844 314 -------FREH--IPLFRLLFPPF-QKY---------ITKGYVSEDEAGKR-LAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 314 -------~~~~--~~~~~~~~~~~-~~~---------~~~~~~~pee~a~~-v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... ......+.... ... ....++.++|+|++ +++++..+. +| .+.+.+
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~---~g-~~~i~~ 287 (377)
T 2q1s_A 219 GAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP---GG-VYNIAS 287 (377)
T ss_dssp TCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT---TE-EEECCC
T ss_pred cccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC---CC-eEEecC
Confidence 1100 00001110000 000 01224568999999 999988753 67 555554
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=170.01 Aligned_cols=175 Identities=13% Similarity=0.142 Sum_probs=133.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|||||+|+||.++++.|+++| +.|++++|+..... +.+ ..++.++.+|++|.+++++++++ .++|
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~~---~~~~~~~~~D~~~~~~~~~~~~~-----~~~d 69 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHE---DAI---TEGAKFYNGDLRDKAFLRDVFTQ-----ENIE 69 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG---GGS---CTTSEEEECCTTCHHHHHHHHHH-----SCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCch---hhc---CCCcEEEECCCCCHHHHHHHHhh-----cCCC
Confidence 579999999999999999999999 59999988643211 112 12678899999999999888775 3799
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+||.... ..+.++++..+++|+.++.++++++... + .++||++||...+. ...
T Consensus 70 ~vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~-~~~----------- 126 (330)
T 2c20_A 70 AVMHFAADSLV-----GVSMEKPLQYYNNNVYGALCLLEVMDEF----K--VDKFIFSSTAATYG-EVD----------- 126 (330)
T ss_dssp EEEECCCCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEECCGGGGC-SCS-----------
T ss_pred EEEECCcccCc-----cccccCHHHHHHHHhHHHHHHHHHHHHc----C--CCEEEEeCCceeeC-CCC-----------
Confidence 99999997522 1145678899999999999999987532 2 35999999976542 100
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
..+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.
T Consensus 127 ------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 127 ------------VDLITEETMTNPTNTYGETKLAIEKMLHWYSQAS----NLRYKIFRYFNVAGAT 176 (330)
T ss_dssp ------------SSSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHTS----SCEEEEEECSEEECCC
T ss_pred ------------CCCCCcCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEecCcccCCC
Confidence 0112233344456789999999999999988774 8999999999998773
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=175.71 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=136.3
Q ss_pred CEEEEEcCCChHHHHHHHHHH-HcCCcEEEEeecChHH---------HHHHH---HHhccC--CCc---EEEEEecCCCH
Q 015844 87 GSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFLK---------AERAA---KSAGMA--KEN---YTIMHLDLASL 148 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~-~~Ga~~vv~~~r~~~~---------~~~~~---~~~~~~--~~~---~~~~~~Dvs~~ 148 (399)
+++|||||+|+||.++++.|+ ++| ++|++++|+... .+.+. +.+... ..+ +.++.+|++|.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 489999999999999999999 999 599999887533 23332 222111 124 88999999999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+++.+++++ ++++|+||||||..... .+.++++..+++|+.+++++++++... + .++||++||.+
T Consensus 82 ~~~~~~~~~----~~~~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~--~~~iv~~SS~~ 146 (397)
T 1gy8_A 82 DFLNGVFTR----HGPIDAVVHMCAFLAVG-----ESVRDPLKYYDNNVVGILRLLQAMLLH----K--CDKIIFSSSAA 146 (397)
T ss_dssp HHHHHHHHH----SCCCCEEEECCCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGG
T ss_pred HHHHHHHHh----cCCCCEEEECCCccCcC-----cchhhHHHHHHHHhHHHHHHHHHHHHh----C--CCEEEEECCHH
Confidence 998887764 45699999999975221 145678899999999999999986532 2 35999999965
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
.+ +...... . ..+..+..+..+..+...|+.||++.+.+++.++.++ |+++++|+||.|
T Consensus 147 v~-g~~~~~~-----~-----------~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilRp~~v 205 (397)
T 1gy8_A 147 IF-GNPTMGS-----V-----------STNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFNA 205 (397)
T ss_dssp GT-BSCCC---------------------CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred Hh-CCCCccc-----c-----------cccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH----CCcEEEEeccce
Confidence 44 2110000 0 0001122333344456789999999999999999886 899999999999
Q ss_pred cCCC
Q 015844 309 ATTG 312 (399)
Q Consensus 309 ~T~~ 312 (399)
..+.
T Consensus 206 ~G~~ 209 (397)
T 1gy8_A 206 CGAH 209 (397)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8763
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=171.69 Aligned_cols=224 Identities=17% Similarity=0.108 Sum_probs=150.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCC------cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGK------WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
.++++++|||||+|+||.++++.|+++|. +.|++++|+...... ..+.++.++.+|++|.++++++++
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~ 84 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------GFSGAVDARAADLSAPGEAEKLVE 84 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------TCCSEEEEEECCTTSTTHHHHHHH
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------ccCCceeEEEcCCCCHHHHHHHHh
Confidence 57788999999999999999999999992 389999987532211 124568889999999999888775
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
+++|+||||||... ..+.+++++.+++|+.|+.++++++.+...+.+ +.++||++||.+.+....
T Consensus 85 ------~~~d~vih~A~~~~------~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~~-- 149 (342)
T 2hrz_A 85 ------ARPDVIFHLAAIVS------GEAELDFDKGYRINLDGTRYLFDAIRIANGKDG-YKPRVVFTSSIAVFGAPL-- 149 (342)
T ss_dssp ------TCCSEEEECCCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHC-CCCEEEEEEEGGGCCSSC--
T ss_pred ------cCCCEEEECCccCc------ccccccHHHHHHHHHHHHHHHHHHHHhcccccC-CCcEEEEeCchHhhCCCC--
Confidence 37999999999752 124578899999999999999999887643211 025999999986652110
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEee--CCcccCCCC
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLY--PGCIATTGL 313 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~--PG~v~T~~~ 313 (399)
..+..+..+..+...|+.||.+.+.+++.++.+.. ....+|++.|. ||.+.++.
T Consensus 150 ----------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~- 206 (342)
T 2hrz_A 150 ----------------------PYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAA- 206 (342)
T ss_dssp ----------------------CSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSG-
T ss_pred ----------------------CCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchh-
Confidence 01122223344567899999999999998887641 11235666665 77654431
Q ss_pred ccccchhhhhhchhhHH----HHh-----cCCCChHHHHHHHHHhhcCC
Q 015844 314 FREHIPLFRLLFPPFQK----YIT-----KGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~----~~~-----~~~~~pee~a~~v~~l~~~~ 353 (399)
..... ..+...... .+. ..++.++|+|+.++.++..+
T Consensus 207 -~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~ 252 (342)
T 2hrz_A 207 -SGFFS--NILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMID 252 (342)
T ss_dssp -GGHHH--HHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSC
T ss_pred -HHHHH--HHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhcc
Confidence 11100 000000000 001 11468999999999988654
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=175.51 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=152.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||+|+||.++++.|+++|.+.|++++|+..... ...+. .+. +.+|++|.+.++.+++. ..+
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~-~~~d~~~~~~~~~~~~~--~~~ 113 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN-IADYMDKEDFLIQIMAG--EEF 113 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGTT----TSC-CSEEEEHHHHHHHHHTT--CCC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhccc----Cce-EeeecCcHHHHHHHHhh--ccc
Confidence 4677899999999999999999999999338888888754321 11111 122 67899999888877753 235
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+|||+||.... +.+++++.+++|+.++.++++++.+. + . +||++||...+. ....
T Consensus 114 ~~~d~Vih~A~~~~~-------~~~~~~~~~~~n~~~~~~ll~a~~~~----~--~-r~V~~SS~~v~g-~~~~------ 172 (357)
T 2x6t_A 114 GDVEAIFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER----E--I-PFLYASSAATYG-GRTS------ 172 (357)
T ss_dssp SSCCEEEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH----T--C-CEEEEEEGGGGC-SCSS------
T ss_pred CCCCEEEECCcccCC-------ccCCHHHHHHHHHHHHHHHHHHHHHc----C--C-eEEEEcchHHhC-CCCC------
Confidence 679999999997532 34567889999999999999998763 1 3 899999987642 1100
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--chh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--~~~ 320 (399)
.+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ...
T Consensus 173 -----------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~Gp~~~~~~~~~~~ 231 (357)
T 2x6t_A 173 -----------------DFIESREYEKPLNVFGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPREGHKGSMASV 231 (357)
T ss_dssp -----------------CCCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSCTTCGGGSCH
T ss_pred -----------------CCcCCcCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEecCeEECCCCCCCcccchH
Confidence 011111223345689999999999999888764 899999999999887432100 000
Q ss_pred hhhhchh---------h-HHHH-hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 321 FRLLFPP---------F-QKYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 321 ~~~~~~~---------~-~~~~-~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
...+... + .... ...++.++|+|+++++++..+. |..+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~----~~~~~i~~ 284 (357)
T 2x6t_A 232 AFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV----SGIFNLGT 284 (357)
T ss_dssp HHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC----CEEEEESC
T ss_pred HHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC----CCeEEecC
Confidence 0000000 0 0011 2245789999999999997654 45555543
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-21 Score=180.17 Aligned_cols=238 Identities=15% Similarity=0.100 Sum_probs=147.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHH--HHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+|++|||||+|+||.++++.|+++| +.|+++.|+.+.... ....+. ...++.++.+|++|.+++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~------- 79 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIA------- 79 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHT-------
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHc-------
Confidence 6799999999999999999999999 599988887543211 111222 12467889999999988877764
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC---CCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN---VPP 240 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~---~~~ 240 (399)
.+|+|||+|+... .. ..+..++.+++|+.|++++++++.+... .++||++||.++..+..... ...
T Consensus 80 ~~D~Vih~A~~~~----~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~-----v~r~V~~SS~~~~~~~~~~~~~~~~~ 148 (338)
T 2rh8_A 80 GCDFVFHVATPVH----FA--SEDPENDMIKPAIQGVVNVMKACTRAKS-----VKRVILTSSAAAVTINQLDGTGLVVD 148 (338)
T ss_dssp TCSEEEEESSCCC----C-----------CHHHHHHHHHHHHHHHHCTT-----CCEEEEECCHHHHHHHHHTCSCCCCC
T ss_pred CCCEEEEeCCccC----CC--CCCcHHHHHHHHHHHHHHHHHHHHHcCC-----cCEEEEEecHHHeecCCcCCCCcccC
Confidence 5899999998641 11 1122245899999999999999876421 25999999987543211000 000
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
...+... ....+. +....|+.||.+.+.+++.++.+. |+++++|+||.|.+++.......
T Consensus 149 E~~~~~~---------------~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~~~~~~~~ 209 (338)
T 2rh8_A 149 EKNWTDI---------------EFLTSAKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGSSLTSDVPS 209 (338)
T ss_dssp TTTTTCC----------------------CCCCCCTTSCCHHHHHHHHHHHHH----TCCEEEEEECEEESCCSSSSCCH
T ss_pred hhhccch---------------hhccccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCCCCCCCc
Confidence 0000000 000000 011269999999888888777654 89999999999999854322111
Q ss_pred hhhhhc------h-hhH---HH--Hhc--CCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 320 LFRLLF------P-PFQ---KY--ITK--GYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 320 ~~~~~~------~-~~~---~~--~~~--~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
...... . .+. .. ..+ .++.++|+|+++++++..+. .+|.|+..
T Consensus 210 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~~~ 266 (338)
T 2rh8_A 210 SIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKES--ASGRYICC 266 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTT--CCEEEEEC
T ss_pred hHHHHHHHHcCCccccccccccccccCcccEEEHHHHHHHHHHHHcCCC--cCCcEEEe
Confidence 111100 0 000 00 001 37899999999999987643 35676543
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-20 Score=175.65 Aligned_cols=238 Identities=14% Similarity=0.130 Sum_probs=158.3
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC-CHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs-~~~~v~~~~~~~~ 159 (399)
..|.+++||||||+|+||.++++.|+++ | ++|++++|+......... ..++.++.+|++ |.+.+.++++
T Consensus 20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~-----~~~v~~~~~Dl~~d~~~~~~~~~--- 90 (372)
T 3slg_A 20 GSMKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQTDRLGDLVK-----HERMHFFEGDITINKEWVEYHVK--- 90 (372)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESCCTTTGGGGG-----STTEEEEECCTTTCHHHHHHHHH---
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCChhhhhhhcc-----CCCeEEEeCccCCCHHHHHHHhc---
Confidence 3567889999999999999999999998 8 599999998654332211 247899999999 9999988886
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++|+|||+||.... ....++..+.+++|+.++.++++++...- .+||++||...+. ......
T Consensus 91 ----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-------~~~v~~SS~~vyg-~~~~~~- 152 (372)
T 3slg_A 91 ----KCDVILPLVAIATP-----ATYVKQPLRVFELDFEANLPIVRSAVKYG-------KHLVFPSTSEVYG-MCADEQ- 152 (372)
T ss_dssp ----HCSEEEECBCCCCH-----HHHHHCHHHHHHHHTTTTHHHHHHHHHHT-------CEEEEECCGGGGB-SCCCSS-
T ss_pred ----cCCEEEEcCccccH-----HHHhhCHHHHHHHHHHHHHHHHHHHHHhC-------CcEEEeCcHHHhC-CCCCCC-
Confidence 49999999997532 11345677889999999999999886542 3999999965442 110000
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-- 317 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~-- 317 (399)
+.. ...+........+...|+.+|.+.+.+++.++.+ |+++++|+|+.|.++......
T Consensus 153 ----~~e-----------~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~ 212 (372)
T 3slg_A 153 ----FDP-----------DASALTYGPINKPRWIYACSKQLMDRVIWGYGME-----GLNFTLFRPFNWIGPGLDSIYTP 212 (372)
T ss_dssp ----BCT-----------TTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECSEECSSCCCTTCS
T ss_pred ----CCc-----------cccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC-----CCCEEEEccccccCCCccccccc
Confidence 000 0000000001135568999999999888877643 899999999999887532100
Q ss_pred ----chhhhhhc-hhhHHH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 318 ----IPLFRLLF-PPFQKY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 318 ----~~~~~~~~-~~~~~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
......+. ...... ....++.++|+|++++.++..+.....|..+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~ 275 (372)
T 3slg_A 213 KEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGN 275 (372)
T ss_dssp BSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECC
T ss_pred ccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCcCCCceEEeCC
Confidence 00111111 111100 01135688999999999998865334666666655
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-19 Score=164.85 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=149.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++|||||+|+||.++++.|+++| +.|++++|+....+ . + ++.++.+|++ .+++.++++ ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~-~-------~~~~~~~Dl~-~~~~~~~~~-------~~ 63 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIGNKA-I-N-------DYEYRVSDYT-LEDLINQLN-------DV 63 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCC--------------CCEEEECCCC-HHHHHHHTT-------TC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCCccc-C-C-------ceEEEEcccc-HHHHHHhhc-------CC
Confidence 3689999999999999999999999 59999999843322 1 1 5788999999 888877765 69
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||+||..... +++..+++|+.++.++++++... + ..+||++||...+. ...
T Consensus 64 d~Vih~a~~~~~~---------~~~~~~~~n~~~~~~ll~a~~~~----~--~~r~v~~SS~~vyg-~~~---------- 117 (311)
T 3m2p_A 64 DAVVHLAATRGSQ---------GKISEFHDNEILTQNLYDACYEN----N--ISNIVYASTISAYS-DET---------- 117 (311)
T ss_dssp SEEEECCCCCCSS---------SCGGGTHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGGGCC-CGG----------
T ss_pred CEEEEccccCCCC---------ChHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEccHHHhC-CCC----------
Confidence 9999999986321 45678899999999999987543 2 24899999966542 100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
..+..+..+..+...|+.+|.+.+.+++.++.+. |++++.++||.|.++...... ....+.
T Consensus 118 -------------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~--~~~~~~ 178 (311)
T 3m2p_A 118 -------------SLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKK----GLCIKNLRFAHLYGFNEKNNY--MINRFF 178 (311)
T ss_dssp -------------GCSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHHS----CCEEEEEEECEEECSCC--CC--HHHHHH
T ss_pred -------------CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCEEEEeeCceeCcCCCCCC--HHHHHH
Confidence 0112233344556789999999999999888764 899999999999887443210 111111
Q ss_pred hhhH-HH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 326 PPFQ-KY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 326 ~~~~-~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... .. ....++..+|+|++++.++..+. .|..+.+.+
T Consensus 179 ~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~---~~~~~~i~~ 226 (311)
T 3m2p_A 179 RQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK---VSGTFNIGS 226 (311)
T ss_dssp HHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT---CCEEEEECC
T ss_pred HHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC---CCCeEEeCC
Confidence 1000 00 01125678999999999998764 455555443
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-21 Score=169.32 Aligned_cols=192 Identities=12% Similarity=0.067 Sum_probs=138.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.+++++||||+|+||.++++.|+++|. ++|++++|+... ...++.++.+|++|.+++.+++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~~~~~~~~~~D~~~~~~~~~~~-------- 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNPVGPLAELLPQLDGS-------- 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECCBSCHHHHGGGCCSC--------
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------cCCCceEEeccccCHHHHHHhh--------
Confidence 457999999999999999999999994 289999998654 1246778889998877655443
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+|+||||||.... +.+++++.+++|+.++.++++++.+. + .++||++||.....
T Consensus 66 -~d~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~~~~------------ 119 (215)
T 2a35_A 66 -IDTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALEM----G--ARHYLVVSALGADA------------ 119 (215)
T ss_dssp -CSEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEECCTTCCT------------
T ss_pred -hcEEEECeeeccc-------cCCCHHHHHHhhHHHHHHHHHHHHHc----C--CCEEEEECCcccCC------------
Confidence 9999999997421 24567889999999999999987653 2 25899999977652
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceE-EEEeeCCcccCCCCccccchhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA-FASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~-v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
++...|+.+|.+.+.+++. .|++ +++|+||.+.++...........
T Consensus 120 -------------------------~~~~~y~~sK~~~e~~~~~--------~~~~~~~~vrp~~v~g~~~~~~~~~~~~ 166 (215)
T 2a35_A 120 -------------------------KSSIFYNRVKGELEQALQE--------QGWPQLTIARPSLLFGPREEFRLAEILA 166 (215)
T ss_dssp -------------------------TCSSHHHHHHHHHHHHHTT--------SCCSEEEEEECCSEESTTSCEEGGGGTT
T ss_pred -------------------------CCccHHHHHHHHHHHHHHH--------cCCCeEEEEeCceeeCCCCcchHHHHHH
Confidence 1234799999998877642 3898 99999999998743211111100
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
....++.. ....++.++|+|+.++.++..+.
T Consensus 167 ~~~~~~~~-~~~~~i~~~Dva~~~~~~~~~~~ 197 (215)
T 2a35_A 167 APIARILP-GKYHGIEACDLARALWRLALEEG 197 (215)
T ss_dssp CCCC-----CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HhhhhccC-CCcCcEeHHHHHHHHHHHHhcCC
Confidence 00011100 01235689999999999998763
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-19 Score=175.38 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=152.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHc---CCcEEEEeecChHHHHHHH---HHhcc------------CCCcEEEEEec
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAET---GKWHIIMACRDFLKAERAA---KSAGM------------AKENYTIMHLD 144 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~---Ga~~vv~~~r~~~~~~~~~---~~~~~------------~~~~~~~~~~D 144 (399)
..++++||||||+|+||.+++++|+++ | ++|++++|+........ +.+.. ...++.++.+|
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 567899999999999999999999999 8 59999999865432221 11111 13579999999
Q ss_pred CC------CHHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCC
Q 015844 145 LA------SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPS 218 (399)
Q Consensus 145 vs------~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~ 218 (399)
++ |.+.++++++ ++|+||||||.... +.+++.+++|+.|+.++++++.. .+ .
T Consensus 149 l~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~---------~~~~~~~~~Nv~gt~~ll~aa~~----~~--~ 206 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA---------FPYHELFGPNVAGTAELIRIALT----TK--L 206 (478)
T ss_dssp TTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB---------SSCCEEHHHHHHHHHHHHHHHTS----SS--C
T ss_pred CCCcccCCCHHHHHHHHc-------CCCEEEECccccCC---------cCHHHHHHHHHHHHHHHHHHHHh----CC--C
Confidence 98 6667776665 59999999998532 34567889999999999988753 22 2
Q ss_pred ceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCC-----------hhhhHHHhHHHHHHHHHH
Q 015844 219 KRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD-----------GAKAYKDSKVCNMLTMQE 287 (399)
Q Consensus 219 g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~Y~~sK~a~~~~~~~ 287 (399)
.+||++||...+... .. .+..+..... ....|+.||.+.+.+++.
T Consensus 207 ~~~V~iSS~~v~~~~-~~-----------------------~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 262 (478)
T 4dqv_A 207 KPFTYVSTADVGAAI-EP-----------------------SAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLRE 262 (478)
T ss_dssp CCEEEEEEGGGGTTS-CT-----------------------TTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHH
T ss_pred CeEEEEeehhhcCcc-CC-----------------------CCcCCcccccccCcccccccccccchHHHHHHHHHHHHH
Confidence 489999997643211 00 0011111111 124599999999999999
Q ss_pred HHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHH------Hh---------------cCCCChHHHHHHH
Q 015844 288 FHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKY------IT---------------KGYVSEDEAGKRL 346 (399)
Q Consensus 288 la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~~~pee~a~~v 346 (399)
++.+. |+++++|+||.|..+............+...+... +. ..++..+++|+++
T Consensus 263 ~~~~~----gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai 338 (478)
T 4dqv_A 263 ANDLC----ALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAI 338 (478)
T ss_dssp HHHHH----CCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHH
T ss_pred HHHHh----CCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHH
Confidence 88765 89999999999987532111111111111111111 10 0236789999999
Q ss_pred HHhhcCCC--CCCCceEEccCC
Q 015844 347 AQVVSDPS--LTKSGVYWSWNK 366 (399)
Q Consensus 347 ~~l~~~~~--~~~~G~~~~~dg 366 (399)
+.++.... ....|..|.+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~ynv~~ 360 (478)
T 4dqv_A 339 AVLGARVAGSSLAGFATYHVMN 360 (478)
T ss_dssp HHHHHTTC-CCCCSEEEEEESC
T ss_pred HHHHhhcccCCCCCCceEEecC
Confidence 99886521 123455555444
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=169.78 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=154.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~ 164 (399)
+++|||||+|+||.++++.|+++ | +.|++++|+....+... ...++.++.+|++| .+.++++++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~-------~ 67 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISRFL-----NHPHFHFVEGDISIHSEWIEYHVK-------K 67 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGGGGGGT-----TCTTEEEEECCTTTCSHHHHHHHH-------H
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCCcchHHHhh-----cCCCeEEEeccccCcHHHHHhhcc-------C
Confidence 37999999999999999999998 8 59999999865433211 12468899999998 456666665 4
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+||..... ...++++..+++|+.++.++++++... +++||++||...+. ..... .+
T Consensus 68 ~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~v~~SS~~v~g-~~~~~-----~~ 129 (345)
T 2bll_A 68 CDVVLPLVAIATPI-----EYTRNPLRVFELDFEENLRIIRYCVKY-------RKRIIFPSTSEVYG-MCSDK-----YF 129 (345)
T ss_dssp CSEEEECBCCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEECCGGGGB-TCCCS-----SB
T ss_pred CCEEEEcccccCcc-----chhcCHHHHHHHHHHHHHHHHHHHHHh-------CCeEEEEecHHHcC-CCCCC-----Cc
Confidence 89999999975221 123567789999999999999887642 14999999976542 11000 00
Q ss_pred cccccccCCCCCCCCCCCCCCCC-CChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc------
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH------ 317 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~------ 317 (399)
.. . .+.....+ ..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++......
T Consensus 130 ~e-----------~-~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~~~~~~~~~~~~ 193 (345)
T 2bll_A 130 DE-----------D-HSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLDNLNAARIGS 193 (345)
T ss_dssp CT-----------T-TCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSSCCCTTCSBSCB
T ss_pred CC-----------c-ccccccCcccCcccccHHHHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCCccccccccccc
Confidence 00 0 00000001 1345689999999999999998775 899999999999887532100
Q ss_pred chh-hhhhchhhHHH----H-----hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 IPL-FRLLFPPFQKY----I-----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~-~~~~~~~~~~~----~-----~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
... ...+....... . ...++.++|+|++++.++..+.....|..+.+.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~ 253 (345)
T 2bll_A 194 SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNP 253 (345)
T ss_dssp CHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCT
T ss_pred ccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccccCCCceEEeCCC
Confidence 000 01111111110 0 11267899999999999987643346766666553
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-20 Score=163.13 Aligned_cols=213 Identities=11% Similarity=-0.001 Sum_probs=138.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||+++++.|+++| +.|++++|+..+..... ..++.++.+|++|.++ +. +..+|+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~------~~~~~~~~~D~~d~~~--~~-------~~~~d~ 65 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG-HEVLAVVRDPQKAADRL------GATVATLVKEPLVLTE--AD-------LDSVDA 65 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHT------CTTSEEEECCGGGCCH--HH-------HTTCSE
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEeccccccccc------CCCceEEecccccccH--hh-------cccCCE
Confidence 59999999999999999999999 59999999987655331 2467889999999887 22 247999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||||..... + ...+|+.++.++++ .+++.+ ++||++||..+..+..... ..
T Consensus 66 vi~~ag~~~~~--------~----~~~~n~~~~~~l~~----a~~~~~---~~~v~~SS~~~~~~~~~~~----~~---- 118 (224)
T 3h2s_A 66 VVDALSVPWGS--------G----RGYLHLDFATHLVS----LLRNSD---TLAVFILGSASLAMPGADH----PM---- 118 (224)
T ss_dssp EEECCCCCTTS--------S----CTHHHHHHHHHHHH----TCTTCC---CEEEEECCGGGSBCTTCSS----CG----
T ss_pred EEECCccCCCc--------c----hhhHHHHHHHHHHH----HHHHcC---CcEEEEecceeeccCCCCc----cc----
Confidence 99999985211 0 13457777655544 445443 6999999987664221000 00
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
...+.....+...|+.+|.+.+.+ +.+. +..|++++.|+||.+.++............+ .
T Consensus 119 -------------~~~~~~~~~~~~~y~~sK~~~e~~-~~~~----~~~~i~~~ivrp~~v~g~~~~~~~~~~~~~~-~- 178 (224)
T 3h2s_A 119 -------------ILDFPESAASQPWYDGALYQYYEY-QFLQ----MNANVNWIGISPSEAFPSGPATSYVAGKDTL-L- 178 (224)
T ss_dssp -------------GGGCCGGGGGSTTHHHHHHHHHHH-HHHT----TCTTSCEEEEEECSBCCCCCCCCEEEESSBC-C-
T ss_pred -------------cccCCCCCccchhhHHHHHHHHHH-HHHH----hcCCCcEEEEcCccccCCCcccCceeccccc-c-
Confidence 000111112356799999997754 2222 3459999999999999873322111000000 0
Q ss_pred hHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 328 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 328 ~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
. ......++.++|+|+.++.++..+.. .|+.|...+
T Consensus 179 ~-~~~~~~~i~~~DvA~~~~~~l~~~~~--~g~~~~~~~ 214 (224)
T 3h2s_A 179 V-GEDGQSHITTGNMALAILDQLEHPTA--IRDRIVVRD 214 (224)
T ss_dssp C-CTTSCCBCCHHHHHHHHHHHHHSCCC--TTSEEEEEE
T ss_pred c-CCCCCceEeHHHHHHHHHHHhcCccc--cCCEEEEec
Confidence 0 01123468999999999999988743 566666555
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=165.56 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=126.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh----HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~----~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++|||||+|+||+++++.|+++|+ .|++++|.. ...+.+.. + .+.++.++.+|++|.++++++++..
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~Dl~~~~~~~~~~~~~----- 72 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIER-L--GGKHPTFVEGDIRNEALMTEILHDH----- 72 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHH-H--HTSCCEEEECCTTCHHHHHHHHHHT-----
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCCcchhHHHHHHh-h--cCCcceEEEccCCCHHHHHHHhhcc-----
Confidence 699999999999999999999994 888887632 22222211 1 1346788999999999998887652
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+||||||..... ...+++.+.+++|+.+++++++++... + .++||++||.+.+. ...
T Consensus 73 ~~D~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~iv~~SS~~~~g-~~~-------- 132 (338)
T 1udb_A 73 AIDTVIHFAGLKAVG-----ESVQKPLEYYDNNVNGTLRLISAMRAA----N--VKNFIFSSSATVYG-DNP-------- 132 (338)
T ss_dssp TCSEEEECCSCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEEEEGGGGC-SCC--------
T ss_pred CCCEEEECCccCccc-----cchhcHHHHHHHHHHHHHHHHHHHHhc----C--CCeEEEEccHHHhC-CCC--------
Confidence 699999999974211 133556788999999999999875432 2 35999999976542 100
Q ss_pred ccccccccCCCCCCCCCCCCCCCCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
..+..+..+. ++...|+.||++.+.+++.++.+. .++++..+.|+.+..+
T Consensus 133 ---------------~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~ 183 (338)
T 1udb_A 133 ---------------KIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGA 183 (338)
T ss_dssp ---------------SSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECC
T ss_pred ---------------CCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHhc---CCCceEEEeeceecCC
Confidence 0011111122 235689999999999999998774 3899999998776543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=158.45 Aligned_cols=211 Identities=13% Similarity=0.165 Sum_probs=131.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||+++++.|+++| ++|++++|+.++.+... .++.++.+|++|.++ +.+ ..+|+
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~-------~~~~~~~~D~~d~~~--~~~-------~~~d~ 64 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNAGKITQTH-------KDINILQKDIFDLTL--SDL-------SDQNV 64 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCSHHHHHHC-------SSSEEEECCGGGCCH--HHH-------TTCSE
T ss_pred eEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCchhhhhcc-------CCCeEEeccccChhh--hhh-------cCCCE
Confidence 59999999999999999999999 59999999977655432 457889999999887 222 46999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||||.... ...+|+.++.++ ++.+++.+ .++||++||..+..+.....
T Consensus 65 vi~~ag~~~~--------------~~~~~~~~~~~l----~~a~~~~~--~~~~v~~SS~~~~~~~~~~~---------- 114 (221)
T 3ew7_A 65 VVDAYGISPD--------------EAEKHVTSLDHL----ISVLNGTV--SPRLLVVGGAASLQIDEDGN---------- 114 (221)
T ss_dssp EEECCCSSTT--------------TTTSHHHHHHHH----HHHHCSCC--SSEEEEECCCC-------------------
T ss_pred EEECCcCCcc--------------ccchHHHHHHHH----HHHHHhcC--CceEEEEecceEEEcCCCCc----------
Confidence 9999998421 134466655544 44555543 46999999988764321100
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
...+..+..+...|+.+|.+.+.+ ..+.. ...|+++++|+||.+.++....... ......
T Consensus 115 -------------~~~~~~~~~~~~~y~~~k~~~e~~-~~~~~---~~~gi~~~ivrp~~v~g~~~~~~~~---~~~~~~ 174 (221)
T 3ew7_A 115 -------------TLLESKGLREAPYYPTARAQAKQL-EHLKS---HQAEFSWTYISPSAMFEPGERTGDY---QIGKDH 174 (221)
T ss_dssp -----------------------CCCSCCHHHHHHHH-HHHHT---TTTTSCEEEEECSSCCCCC---------------
T ss_pred -------------cccccCCCCCHHHHHHHHHHHHHH-HHHHh---hccCccEEEEeCcceecCCCccCce---Eecccc
Confidence 000111222345699999998776 33332 1459999999999998862211100 000000
Q ss_pred hH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 328 FQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 328 ~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+. ......+++++|+|+.++.++.++. ..|+.|...+.
T Consensus 175 ~~~~~~~~~~i~~~Dva~~~~~~l~~~~--~~g~~~~~~~~ 213 (221)
T 3ew7_A 175 LLFGSDGNSFISMEDYAIAVLDEIERPN--HLNEHFTVAGK 213 (221)
T ss_dssp ---------CCCHHHHHHHHHHHHHSCS--CTTSEEECCC-
T ss_pred ceecCCCCceEeHHHHHHHHHHHHhCcc--ccCCEEEECCC
Confidence 00 0111247899999999999998874 46777777774
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=162.52 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=142.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
..+++|||||+|+||.++++.|+++| +.|++++|+ .+|++|.+++.++++.. +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~---------------------~~Dl~d~~~~~~~~~~~-----~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ---------------------DLDITNVLAVNKFFNEK-----K 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT---------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred ccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc---------------------cCCCCCHHHHHHHHHhc-----C
Confidence 45689999999999999999999999 599999986 27999999999888765 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+||||||.... +.+.+++++.+++|+.++.++++++.+. +.+||++||.+.+.+..
T Consensus 64 ~d~vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~-------~~~iv~~SS~~v~~~~~---------- 121 (292)
T 1vl0_A 64 PNVVINCAAHTAV-----DKCEEQYDLAYKINAIGPKNLAAAAYSV-------GAEIVQISTDYVFDGEA---------- 121 (292)
T ss_dssp CSEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHH-------TCEEEEEEEGGGSCSCC----------
T ss_pred CCEEEECCccCCH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEechHHeECCCC----------
Confidence 9999999997421 2245778899999999999999998763 13999999986652110
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
..+..+..+..+...|+.+|.+.+.+++.++. .++.|+|+.|.++ .....+ .+
T Consensus 122 --------------~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~--------~~~~lR~~~v~G~--~~~~~~---~~ 174 (292)
T 1vl0_A 122 --------------KEPITEFDEVNPQSAYGKTKLEGENFVKALNP--------KYYIVRTAWLYGD--GNNFVK---TM 174 (292)
T ss_dssp --------------SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEESS--SSCHHH---HH
T ss_pred --------------CCCCCCCCCCCCccHHHHHHHHHHHHHHhhCC--------CeEEEeeeeeeCC--CcChHH---HH
Confidence 01112222334556899999999988876542 3567788887755 111111 11
Q ss_pred chhhH-HH-------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 325 FPPFQ-KY-------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 325 ~~~~~-~~-------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..... .. ....++.++|+|+.+++++..+ .|..+.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~----~~~~~~i~~ 220 (292)
T 1vl0_A 175 INLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEK----NYGTFHCTC 220 (292)
T ss_dssp HHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHT----CCEEEECCC
T ss_pred HHHHhcCCcEEeecCeeeCCccHHHHHHHHHHHHhcC----CCcEEEecC
Confidence 10000 00 1134568999999999999774 455555555
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=165.16 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=144.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||+|+||.++++.|+++| +.|++++|+..........+. ...++.++.+|+.+.. +
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------~ 89 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWI-GHENFELINHDVVEPL------------Y 89 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGT-TCTTEEEEECCTTSCC------------C
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCccchhhhhhhc-cCCceEEEeCccCChh------------h
Confidence 4677899999999999999999999999 599999986432111111111 1346889999998752 4
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.++|+|||+||..... ...++++..+++|+.++.++++++... +.+||++||...+. ..... +
T Consensus 90 ~~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~-------~~~~v~~SS~~v~g-~~~~~-~--- 152 (343)
T 2b69_A 90 IEVDQIYHLASPASPP-----NYMYNPIKTLKTNTIGTLNMLGLAKRV-------GARLLLASTSEVYG-DPEVH-P--- 152 (343)
T ss_dssp CCCSEEEECCSCCSHH-----HHTTCHHHHHHHHHHHHHHHHHHHHHH-------TCEEEEEEEGGGGB-SCSSS-S---
T ss_pred cCCCEEEECccccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHHh-------CCcEEEECcHHHhC-CCCCC-C---
Confidence 5799999999975321 012456788999999999999988653 24999999976542 11000 0
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-h
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-F 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~ 321 (399)
. ......+..+..+...|+.+|.+.+.+++.++.+. |+++++++||.|.++......... .
T Consensus 153 -~-------------~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~~~~~~~~~~ 214 (343)
T 2b69_A 153 -Q-------------SEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRMHMNDGRVVS 214 (343)
T ss_dssp -B-------------CTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTCCTTCCCHHH
T ss_pred -C-------------cccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEEcceeCcCCCCCcccHHH
Confidence 0 00000001234456789999999999999988775 899999999999887432110000 0
Q ss_pred hhhchhhHHHH---------hcCCCChHHHHHHHHHhhcCC
Q 015844 322 RLLFPPFQKYI---------TKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 322 ~~~~~~~~~~~---------~~~~~~pee~a~~v~~l~~~~ 353 (399)
..+.......+ ...++.++|+|++++.++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 255 (343)
T 2b69_A 215 NFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 255 (343)
T ss_dssp HHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS
T ss_pred HHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcC
Confidence 11111111000 122568999999999998754
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=167.53 Aligned_cols=216 Identities=12% Similarity=0.102 Sum_probs=149.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 86 KGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++++|||||+|+||.++++.|+++ | +.|++++|+....+ .. .++.++.+|++|.+++++++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~-~~-------~~~~~~~~D~~d~~~~~~~~~~~----- 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIRKLNTD-VV-------NSGPFEVVNALDFNQIEHLVEVH----- 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESCCCSCH-HH-------HSSCEEECCTTCHHHHHHHHHHT-----
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCCCcccc-cc-------CCCceEEecCCCHHHHHHHHhhc-----
Confidence 467999999999999999999998 8 58999988754421 11 13567899999999998888753
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
++|+|||+||.... ...++++..+++|+.++.++++++.+. + .++||++||...+.....
T Consensus 68 ~~d~vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~SS~~~~~~~~~-------- 127 (312)
T 2yy7_A 68 KITDIYLMAALLSA------TAEKNPAFAWDLNMNSLFHVLNLAKAK----K--IKKIFWPSSIAVFGPTTP-------- 127 (312)
T ss_dssp TCCEEEECCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHTT----S--CSEEECCEEGGGCCTTSC--------
T ss_pred CCCEEEECCccCCC------chhhChHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEeccHHHhCCCCC--------
Confidence 69999999997421 123567889999999999999987642 1 259999999876531100
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc---hh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---PL 320 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~---~~ 320 (399)
..+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.+..+....... ..
T Consensus 128 ---------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~g~~~~~~~~~~~~~ 188 (312)
T 2yy7_A 128 ---------------KENTPQYTIMEPSTVYGISKQAGERWCEYYHNIY----GVDVRSIRYPGLISWSTPPGGGTTDYA 188 (312)
T ss_dssp ---------------SSSBCSSCBCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEECEEECEEECSSSCCCSCTTTHH
T ss_pred ---------------CCCccccCcCCCCchhHHHHHHHHHHHHHHHHhc----CCcEEEEeCCeEecCCCCCCCchhhhH
Confidence 0011122233456789999999999999888775 8999999999998753211100 01
Q ss_pred hhhhchhhHHH---------HhcCCCChHHHHHHHHHhhcCCC
Q 015844 321 FRLLFPPFQKY---------ITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 321 ~~~~~~~~~~~---------~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
...+...+..- ....++..+|+|++++.++..+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 231 (312)
T 2yy7_A 189 VDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPV 231 (312)
T ss_dssp HHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCcc
Confidence 11111111100 01124578999999999987654
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-19 Score=161.52 Aligned_cols=206 Identities=14% Similarity=0.044 Sum_probs=138.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||+++++.|+ +| ++|++++|+... . .+ +.+|++|.++++++++.+ ++|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~~--------~-~~-----~~~Dl~~~~~~~~~~~~~-----~~d~ 60 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLS-ER-HEVIKVYNSSEI--------Q-GG-----YKLDLTDFPRLEDFIIKK-----RPDV 60 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHT-TT-SCEEEEESSSCC--------T-TC-----EECCTTSHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCChhHHHHHHHHh-cC-CeEEEecCCCcC--------C-CC-----ceeccCCHHHHHHHHHhc-----CCCE
Confidence 59999999999999999999 48 599999998631 0 11 789999999999998865 6999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||||.... +.+.+++++.+++|+.++.++++++.+. +++||++||...+.+..
T Consensus 61 vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~iv~~SS~~~~~~~~------------- 115 (273)
T 2ggs_A 61 IINAAAMTDV-----DKCEIEKEKAYKINAEAVRHIVRAGKVI-------DSYIVHISTDYVFDGEK------------- 115 (273)
T ss_dssp EEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEEEEGGGSCSSS-------------
T ss_pred EEECCcccCh-----hhhhhCHHHHHHHhHHHHHHHHHHHHHh-------CCeEEEEecceeEcCCC-------------
Confidence 9999997522 2245788999999999999999998642 25999999988763210
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh--hc
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL--LF 325 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~--~~ 325 (399)
.+..+..+..+...|+.+|.+.+.+++. + ....+|++.|. | .+. +.......... ..
T Consensus 116 ------------~~~~e~~~~~~~~~Y~~sK~~~e~~~~~----~-~~~~iR~~~v~-G--~~~-~~~~~~~~~~~~~~~ 174 (273)
T 2ggs_A 116 ------------GNYKEEDIPNPINYYGLSKLLGETFALQ----D-DSLIIRTSGIF-R--NKG-FPIYVYKTLKEGKTV 174 (273)
T ss_dssp ------------CSBCTTSCCCCSSHHHHHHHHHHHHHCC----T-TCEEEEECCCB-S--SSS-HHHHHHHHHHTTCCE
T ss_pred ------------CCcCCCCCCCCCCHHHHHHHHHHHHHhC----C-CeEEEeccccc-c--ccH-HHHHHHHHHHcCCCE
Confidence 0111222334456899999999988876 2 12245555544 3 221 10000000000 00
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..... ...++.++|+|+.+++++..+ .+| .+.+++
T Consensus 175 ~~~~~--~~~~~~~~dva~~i~~~~~~~---~~g-~~~i~~ 209 (273)
T 2ggs_A 175 FAFKG--YYSPISARKLASAILELLELR---KTG-IIHVAG 209 (273)
T ss_dssp EEESC--EECCCBHHHHHHHHHHHHHHT---CCE-EEECCC
T ss_pred EeecC--CCCceEHHHHHHHHHHHHhcC---cCC-eEEECC
Confidence 00000 245789999999999999765 256 455554
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=159.47 Aligned_cols=203 Identities=15% Similarity=0.110 Sum_probs=142.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||.++++.|+++| +.|++++|. .+|++|.+++.++++.. ++|+
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~---------------------~~D~~d~~~~~~~~~~~-----~~d~ 59 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEE-YDIYPFDKK---------------------LLDITNISQVQQVVQEI-----RPHI 59 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTT-EEEEEECTT---------------------TSCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEeccc---------------------ccCCCCHHHHHHHHHhc-----CCCE
Confidence 89999999999999999999999 599999992 27999999999998865 6999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+||.... ..+.++++..+++|+.++.++++++.+. +.+||++||...+.+.
T Consensus 60 vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~v~~SS~~vy~~~-------------- 113 (287)
T 3sc6_A 60 IIHCAAYTKV-----DQAEKERDLAYVINAIGARNVAVASQLV-------GAKLVYISTDYVFQGD-------------- 113 (287)
T ss_dssp EEECCCCCCH-----HHHTTCHHHHHHHHTHHHHHHHHHHHHH-------TCEEEEEEEGGGSCCC--------------
T ss_pred EEECCcccCh-----HHHhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEchhhhcCCC--------------
Confidence 9999998632 1233678899999999999999998654 2489999998765211
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-hhhhc-
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FRLLF- 325 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~~~~~- 325 (399)
...+..+..+..+...|+.+|.+.+.+++.++. +++.++||.|.++... ...+. .....
T Consensus 114 ----------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~--------~~~ilR~~~v~G~~~~-~~~~~~~~~~~~ 174 (287)
T 3sc6_A 114 ----------RPEGYDEFHNPAPINIYGASKYAGEQFVKELHN--------KYFIVRTSWLYGKYGN-NFVKTMIRLGKE 174 (287)
T ss_dssp ----------CSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEECSSSC-CHHHHHHHHHTT
T ss_pred ----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC--------CcEEEeeeeecCCCCC-cHHHHHHHHHHc
Confidence 011223333445667899999998888776543 3578999999876321 11111 00000
Q ss_pred -hhhH--HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 326 -PPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 326 -~~~~--~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..+. ......++.++|+|+++++++..+. +|.| .+.+
T Consensus 175 ~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~---~~~~-~i~~ 214 (287)
T 3sc6_A 175 REEISVVADQIGSPTYVADLNVMINKLIHTSL---YGTY-HVSN 214 (287)
T ss_dssp CSEEEEECSCEECCEEHHHHHHHHHHHHTSCC---CEEE-ECCC
T ss_pred CCCeEeecCcccCceEHHHHHHHHHHHHhCCC---CCeE-EEcC
Confidence 0000 0011235669999999999998764 5544 4444
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=177.85 Aligned_cols=231 Identities=12% Similarity=0.064 Sum_probs=157.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHH-HHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~-v~~~~~~~~~~ 161 (399)
++++++|||||+|+||.++++.|+++ | +.|++++|+....... . ...++.++.+|++|.++ ++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~~~~~~~~----~-~~~~v~~v~~Dl~d~~~~~~~~~~----- 381 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISRF----L-NHPHFHFVEGDISIHSEWIEYHVK----- 381 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESCCTTTGGG----T-TCTTEEEEECCTTTCHHHHHHHHH-----
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcCchhhhhh----c-cCCceEEEECCCCCcHHHHHHhhc-----
Confidence 46789999999999999999999998 8 5999999986543221 1 13468899999999764 555554
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++|+||||||..... ...+++++.+++|+.++.++++++... +++||++||...+... ...
T Consensus 382 --~~D~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~aa~~~-------~~r~V~~SS~~vyg~~-~~~---- 442 (660)
T 1z7e_A 382 --KCDVVLPLVAIATPI-----EYTRNPLRVFELDFEENLRIIRYCVKY-------RKRIIFPSTSEVYGMC-SDK---- 442 (660)
T ss_dssp --HCSEEEECCCCCCTH-----HHHHSHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEECCGGGGBTC-CSS----
T ss_pred --CCCEEEECceecCcc-----ccccCHHHHHHhhhHHHHHHHHHHHHh-------CCEEEEEecHHHcCCC-CCc----
Confidence 589999999975321 124567889999999999999988653 1499999997654211 000
Q ss_pred CCccccccccCCCCCCCCCCCCCCC------C-CChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGG------D-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+..+.. + ..+...|+.||.+.+.+++.++.++ |+++++|+||.|.++...
T Consensus 443 -------------------~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRpg~v~Gp~~~ 499 (660)
T 1z7e_A 443 -------------------YFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLD 499 (660)
T ss_dssp -------------------SBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEESTTSS
T ss_pred -------------------ccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECCCcccCCCcc
Confidence 000111 1 1345689999999999999998775 899999999999887532
Q ss_pred cc-------cchhhhhhchhhHHHH---------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 315 RE-------HIPLFRLLFPPFQKYI---------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~-------~~~~~~~~~~~~~~~~---------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. .......+.......+ ...++.++|+|+++++++..+....+|..+.+++.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~ 568 (660)
T 1z7e_A 500 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNP 568 (660)
T ss_dssp CHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCG
T ss_pred ccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccccCCCeEEEECCC
Confidence 10 0000011111111100 11256799999999999987654456777777663
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=162.14 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=147.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 88 SVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++|||||+|+||.++++.|+++ | +.|++++|+....+ .+.++.+|++|.+++.++++.. ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~-----------~~~~~~~D~~d~~~~~~~~~~~-----~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQRDTG-----------GIKFITLDVSNRDEIDRAVEKY-----SI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESSCCCCT-----------TCCEEECCTTCHHHHHHHHHHT-----TC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCCCcccc-----------CceEEEecCCCHHHHHHHHhhc-----CC
Confidence 4899999999999999999998 7 58998888643211 3567899999999998888752 69
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||+||.... ...++++..+++|+.++.++++++.+. + .++||++||...+.....
T Consensus 64 d~vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~SS~~~~~~~~~---------- 121 (317)
T 3ajr_A 64 DAIFHLAGILSA------KGEKDPALAYKVNMNGTYNILEAAKQH----R--VEKVVIPSTIGVFGPETP---------- 121 (317)
T ss_dssp CEEEECCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGGGCCTTSC----------
T ss_pred cEEEECCcccCC------ccccChHHHhhhhhHHHHHHHHHHHHc----C--CCEEEEecCHHHhCCCCC----------
Confidence 999999997421 134567889999999999999987652 1 259999999876531100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc-c-ch-hhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-H-IP-LFR 322 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~-~-~~-~~~ 322 (399)
..+..+..+..+...|+.||.+.+.+++.++.++ |+++++|.|+.+-.+..... . .. ...
T Consensus 122 -------------~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lR~~~~~g~~~~~~~~~~~~~~~ 184 (317)
T 3ajr_A 122 -------------KNKVPSITITRPRTMFGVTKIAAELLGQYYYEKF----GLDVRSLRYPGIISYKAEPTAGTTDYAVE 184 (317)
T ss_dssp -------------SSSBCSSSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECSSSCCCSCSSTHHHH
T ss_pred -------------CCCccccccCCCCchHHHHHHHHHHHHHHHHHhc----CCeEEEEecCcEeccCCCCCCcchhHHHH
Confidence 0011122233456789999999999999888765 89999998666544322110 0 00 000
Q ss_pred hhchhhHHH---------HhcCCCChHHHHHHHHHhhcCCCC-CCCceEEccCC
Q 015844 323 LLFPPFQKY---------ITKGYVSEDEAGKRLAQVVSDPSL-TKSGVYWSWNK 366 (399)
Q Consensus 323 ~~~~~~~~~---------~~~~~~~pee~a~~v~~l~~~~~~-~~~G~~~~~dg 366 (399)
.+......- ....++..+|+|+.++.++..+.. ..+|..+.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~~ 238 (317)
T 3ajr_A 185 IFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTA 238 (317)
T ss_dssp HHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECCS
T ss_pred HHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCccccccCceEecCC
Confidence 000000000 011235689999999988866532 22334444443
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-18 Score=159.75 Aligned_cols=206 Identities=16% Similarity=0.136 Sum_probs=143.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++|||||+|+||.++++.|+++| +.|+++.|+. .+|++|.+++.++++.. +
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~~r~~--------------------~~D~~d~~~~~~~~~~~-----~ 55 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD--------------------ELNLLDSRAVHDFFASE-----R 55 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT--------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEecCc--------------------cCCccCHHHHHHHHHhc-----C
Confidence 45789999999999999999999999 5888888762 27999999999888764 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+||..... ....++++..+++|+.++.++++++... + .++||++||...+... ..
T Consensus 56 ~d~vih~a~~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~SS~~vyg~~-~~-------- 116 (321)
T 1e6u_A 56 IDQVYLAAAKVGGI----VANNTYPADFIYQNMMIESNIIHAAHQN----D--VNKLLFLGSSCIYPKL-AK-------- 116 (321)
T ss_dssp CSEEEECCCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEECCGGGSCTT-CC--------
T ss_pred CCEEEEcCeecCCc----chhhhCHHHHHHHHHHHHHHHHHHHHHh----C--CCeEEEEccHHHcCCC-CC--------
Confidence 99999999974210 1234567888999999999999988653 1 2499999997665211 00
Q ss_pred cccccccCCCCCCCCCCCCCC-----CCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--
Q 015844 245 GDLRGFAGGLNGLNSSSMIDG-----GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-- 317 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~-- 317 (399)
.+..+. ...+....|+.+|.+.+.+++.++.++ |+++++|+||.|.++......
T Consensus 117 ---------------~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~~~~~~~ 177 (321)
T 1e6u_A 117 ---------------QPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPHDNFHPSN 177 (321)
T ss_dssp ---------------SSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTTCCCCTTC
T ss_pred ---------------CCcCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEEeCCcCCcCCCCCCCC
Confidence 001111 112234689999999999999988775 899999999999887432110
Q ss_pred chhhhhhchhhHH------HH---------hcCCCChHHHHHHHHHhhcCCC
Q 015844 318 IPLFRLLFPPFQK------YI---------TKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 318 ~~~~~~~~~~~~~------~~---------~~~~~~pee~a~~v~~l~~~~~ 354 (399)
......+...+.. .+ ...++..+|+|+.++.++..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~ 229 (321)
T 1e6u_A 178 SHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAH 229 (321)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCH
T ss_pred CccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcc
Confidence 0111111111100 00 1124588999999999987653
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-18 Score=159.57 Aligned_cols=216 Identities=11% Similarity=-0.036 Sum_probs=143.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||.++++.|+++|.+.|++++|+..... ...+. + +. +.+|++|.+.++.+++.. .++++|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~--~--~~-~~~d~~~~~~~~~~~~~~--~~~~~d~ 71 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV--D--LN-IADYMDKEDFLIQIMAGE--EFGDVEA 71 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH--T--SC-CSEEEEHHHHHHHHHTTC--CCSSCCE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC--c--ce-eccccccHHHHHHHHhcc--ccCCCcE
Confidence 48999999999999999999999448888888754321 01111 1 12 678999988887776521 0236999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+||.... +.++++..+++|+.++.++++++.+. + . +||++||...+. ....
T Consensus 72 vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~-~~v~~SS~~v~g-~~~~----------- 125 (310)
T 1eq2_A 72 IFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER----E--I-PFLYASSAATYG-GRTS----------- 125 (310)
T ss_dssp EEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH----T--C-CEEEEEEGGGGT-TCCS-----------
T ss_pred EEECcccccC-------cccCHHHHHHHHHHHHHHHHHHHHHc----C--C-eEEEEeeHHHhC-CCCC-----------
Confidence 9999997522 34567889999999999999988654 1 3 899999986542 1000
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcc-----ccch-hh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-----EHIP-LF 321 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~-----~~~~-~~ 321 (399)
.+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ...+ ..
T Consensus 126 ------------~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~ 189 (310)
T 1eq2_A 126 ------------DFIESREYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPREGHKGSMASVAFHLN 189 (310)
T ss_dssp ------------CBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSCGGGGGGSCHHHHHH
T ss_pred ------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEeCCcEECcCCCCCCccchHHHHHH
Confidence 011111123345689999999999999888663 8999999999998874321 1111 00
Q ss_pred hhhc--hhhHHH----H-hcCCCChHHHHHHHHHhhcCCC
Q 015844 322 RLLF--PPFQKY----I-TKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 322 ~~~~--~~~~~~----~-~~~~~~pee~a~~v~~l~~~~~ 354 (399)
..+. ..+... . ...++.++|+|+.++.++..+.
T Consensus 190 ~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~ 229 (310)
T 1eq2_A 190 TQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV 229 (310)
T ss_dssp HHHHC-------------CBCEEEHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC
Confidence 0000 000000 1 2235679999999999987654
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-18 Score=157.59 Aligned_cols=226 Identities=10% Similarity=0.008 Sum_probs=145.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++++|||||+|+||.++++.|+++|. +.. .....+..+.+|++|.+++.++++..
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~~~-----------~~~~~~~~~~~D~~d~~~~~~~~~~~---- 60 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG-------LPG-----------EDWVFVSSKDADLTDTAQTRALFEKV---- 60 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC-------CTT-----------CEEEECCTTTCCTTSHHHHHHHHHHS----
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC-------ccc-----------ccccccCceecccCCHHHHHHHHhhc----
Confidence 46778999999999999999999999993 110 00112334468999999999888753
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++|+|||+|+..... ..+.++....+++|+.|+.++++++... + ..+||++||...+. .... .
T Consensus 61 -~~d~Vih~A~~~~~~----~~~~~~~~~~~~~nv~gt~~ll~a~~~~----~--~~~~v~~SS~~vyg-~~~~-----~ 123 (319)
T 4b8w_A 61 -QPTHVIHLAAMVGGL----FRNIKYNLDFWRKNVHMNDNVLHSAFEV----G--ARKVVSCLSTCIFP-DKTT-----Y 123 (319)
T ss_dssp -CCSEEEECCCCCCCH----HHHTTCHHHHHHHHHHHHHHHHHHHHHT----T--CSEEEEECCGGGSC-SSCC-----S
T ss_pred -CCCEEEECceecccc----cccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEEcchhhcC-CCCC-----C
Confidence 699999999974210 1234566788999999999999987543 1 24899999986542 1100 0
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc--chh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~--~~~ 320 (399)
.+..... ......+....|+.+|.+.+.+++.++.+. |+++++++||.|..+...... ...
T Consensus 124 ~~~E~~~-------------~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~Gp~~~~~~~~~~~ 186 (319)
T 4b8w_A 124 PIDETMI-------------HNGPPHNSNFGYSYAKRMIDVQNRAYFQQY----GCTFTAVIPTNVFGPHDNFNIEDGHV 186 (319)
T ss_dssp SBCGGGG-------------GBSCCCSSSHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCCCTTTSCH
T ss_pred Ccccccc-------------ccCCCCCCcchHHHHHHHHHHHHHHHHHhh----CCCEEEEeeccccCCCCCCCCccccc
Confidence 0000000 000122333479999999999999988775 899999999999887432110 000
Q ss_pred hh-hhch----hhHHHH---------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 321 FR-LLFP----PFQKYI---------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 321 ~~-~~~~----~~~~~~---------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
.. .+.. .....+ ...++.++|+|++++.++..+.. ..|..+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~ni~ 244 (319)
T 4b8w_A 187 LPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNE-VEPIILSVG 244 (319)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCC-SSCEEECCC
T ss_pred cHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhcccc-CCceEEEec
Confidence 00 1111 001000 01246899999999999876433 345555444
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=161.16 Aligned_cols=210 Identities=13% Similarity=0.030 Sum_probs=139.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+++++|||| +|+||.++++.|+++| +.|++++|+.... ..++.++.+|++|.+++.++++ ++
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~------~~ 63 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQG-HEVTGLRRSAQPM----------PAGVQTLIADVTRPDTLASIVH------LR 63 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECTTSCC----------CTTCCEEECCTTCGGGCTTGGG------GC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCcccc----------ccCCceEEccCCChHHHHHhhc------CC
Confidence 457899999 5999999999999999 5999999986541 2467889999999998877665 36
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+||.. ..+++..+++|+.++.++++++. +.+ .++||++||...+. ...
T Consensus 64 ~d~vih~a~~~----------~~~~~~~~~~n~~~~~~ll~a~~----~~~--~~~~v~~SS~~vyg-~~~--------- 117 (286)
T 3gpi_A 64 PEILVYCVAAS----------EYSDEHYRLSYVEGLRNTLSALE----GAP--LQHVFFVSSTGVYG-QEV--------- 117 (286)
T ss_dssp CSEEEECHHHH----------HHC-----CCSHHHHHHHHHHTT----TSC--CCEEEEEEEGGGCC-CCC---------
T ss_pred CCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHHHHh----hCC--CCEEEEEcccEEEc-CCC---------
Confidence 99999999963 23456778999999999888765 222 35999999986542 100
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
..+..+..+..+...|+.+|.+.+.+ +.. +++++|+||.+.++... .+...+
T Consensus 118 --------------~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~---------~~~~ilR~~~v~G~~~~----~~~~~~ 169 (286)
T 3gpi_A 118 --------------EEWLDEDTPPIAKDFSGKRMLEAEAL-LAA---------YSSTILRFSGIYGPGRL----RMIRQA 169 (286)
T ss_dssp --------------SSEECTTSCCCCCSHHHHHHHHHHHH-GGG---------SSEEEEEECEEEBTTBC----HHHHHT
T ss_pred --------------CCCCCCCCCCCCCChhhHHHHHHHHH-Hhc---------CCeEEEecccccCCCch----hHHHHH
Confidence 01122333445567899999997766 321 78899999999877432 111111
Q ss_pred ch-hhH--HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 325 FP-PFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 325 ~~-~~~--~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. ... ......++.++|+|++++.++..+.....|..+.+.+
T Consensus 170 ~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~ 214 (286)
T 3gpi_A 170 QTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERLYIVTD 214 (286)
T ss_dssp TCGGGSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred HhcccCCCcCceeEEEEHHHHHHHHHHHHhhhccCCCCceEEEeC
Confidence 11 000 0011235689999999999998753223344444443
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=161.39 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=141.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.++++|||||+|+||.++++.|+++| +.|++++|+..........+.. ...++.++.+|++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--------------- 68 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS--------------- 68 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---------------
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---------------
Confidence 457899999999999999999999999 5999999975410000000100 1123444555655
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++|+|||+||..... ...++....++ |+.++.++++++...- ..+||++||...+...
T Consensus 69 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~-n~~~~~~ll~a~~~~~------v~~~v~~SS~~v~~~~-------- 126 (321)
T 3vps_A 69 --DVRLVYHLASHKSVP-----RSFKQPLDYLD-NVDSGRHLLALCTSVG------VPKVVVGSTCEVYGQA-------- 126 (321)
T ss_dssp --TEEEEEECCCCCCHH-----HHTTSTTTTHH-HHHHHHHHHHHHHHHT------CCEEEEEEEGGGGCSC--------
T ss_pred --cCCEEEECCccCChH-----HHHhCHHHHHH-HHHHHHHHHHHHHHcC------CCeEEEecCHHHhCCC--------
Confidence 699999999975321 12233345566 9999999999886652 2499999998765211
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCce-EEEEeeCCcccCCCCccccchh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi-~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
...+..+..+..+...|+.+|.+.+.+++.++.+. |+ ++++++||.+.++....... .
T Consensus 127 ----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~-~ 185 (321)
T 3vps_A 127 ----------------DTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRAS----VAPEVGIVRFFNVYGPGERPDAL-V 185 (321)
T ss_dssp ----------------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHSS----SSCEEEEEEECEEECTTCCTTSH-H
T ss_pred ----------------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCceEEEEeccccCcCCCCCCh-H
Confidence 01122233344566789999999999999888764 89 99999999998874432110 0
Q ss_pred hhhhchhhHHHH---------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 321 FRLLFPPFQKYI---------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 321 ~~~~~~~~~~~~---------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
...+.......+ ...++.++|+|+.++.++..+.. | .+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~---g-~~~i~~ 236 (321)
T 3vps_A 186 PRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP---S-VVNFGS 236 (321)
T ss_dssp HHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCC---S-EEEESC
T ss_pred HHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCC---C-eEEecC
Confidence 011111111100 11246899999999999987643 6 554443
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=152.37 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=137.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 87 GSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
|++|||||+|+||.++++.|+++ | ++|++++|+..+.+.+.. ..+.++.+|++|.+++.++++ .
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~l~~------~~~~~~~~D~~d~~~l~~~~~-------~ 66 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLAD------QGVEVRHGDYNQPESLQKAFA-------G 66 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTTHHHHH------TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHHHHhHHhh------cCCeEEEeccCCHHHHHHHHh-------c
Confidence 46999999999999999999998 8 599999998765443321 256788999999998887765 5
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+||.. . . + ++|+.++.++++++... + .++||++||.....
T Consensus 67 ~d~vi~~a~~~-~-------~-~------~~n~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~------------- 112 (287)
T 2jl1_A 67 VSKLLFISGPH-Y-------D-N------TLLIVQHANVVKAARDA----G--VKHIAYTGYAFAEE------------- 112 (287)
T ss_dssp CSEEEECCCCC-S-------C-H------HHHHHHHHHHHHHHHHT----T--CSEEEEEEETTGGG-------------
T ss_pred CCEEEEcCCCC-c-------C-c------hHHHHHHHHHHHHHHHc----C--CCEEEEECCCCCCC-------------
Confidence 89999999852 1 1 1 57888998888887542 2 25999999976531
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
....|+.+|.+.+.+.+ + .|++++.++||.+.++.............
T Consensus 113 -------------------------~~~~y~~~K~~~E~~~~----~----~~~~~~ilrp~~~~~~~~~~~~~~~~~~~ 159 (287)
T 2jl1_A 113 -------------------------SIIPLAHVHLATEYAIR----T----TNIPYTFLRNALYTDFFVNEGLRASTESG 159 (287)
T ss_dssp -------------------------CCSTHHHHHHHHHHHHH----H----TTCCEEEEEECCBHHHHSSGGGHHHHHHT
T ss_pred -------------------------CCCchHHHHHHHHHHHH----H----cCCCeEEEECCEeccccchhhHHHHhhCC
Confidence 11269999999888764 2 38999999999987643111100000000
Q ss_pred chhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 325 FPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 325 ~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.... .......++.++|+|+.++.++..+. ..|+.+.+++.
T Consensus 160 ~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~i~~~ 201 (287)
T 2jl1_A 160 AIVTNAGSGIVNSVTRNELALAAATVLTEEG--HENKTYNLVSN 201 (287)
T ss_dssp EEEESCTTCCBCCBCHHHHHHHHHHHHTSSS--CTTEEEEECCS
T ss_pred ceeccCCCCccCccCHHHHHHHHHHHhcCCC--CCCcEEEecCC
Confidence 0000 00011246799999999999997753 36777766664
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=157.28 Aligned_cols=207 Identities=10% Similarity=0.007 Sum_probs=141.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||.++++.|+ +| +.|++++|+.. .+.+|++|.+++.++++.. ++|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~-----------------~~~~D~~d~~~~~~~~~~~-----~~d~ 57 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVHSK-----------------EFCGDFSNPKGVAETVRKL-----RPDV 57 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTCS-----------------SSCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred eEEEECCCCHHHHHHHHHhh-cC-CeEEEeccccc-----------------cccccCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999 89 59999999751 3468999999999888764 6999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+||.... ..+.++++..+++|+.++.++++++.. . +.+||++||...+.+. .
T Consensus 58 vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~----~---~~~~v~~SS~~vy~~~-~------------ 112 (299)
T 1n2s_A 58 IVNAAAHTAV-----DKAESEPELAQLLNATSVEAIAKAANE----T---GAWVVHYSTDYVFPGT-G------------ 112 (299)
T ss_dssp EEECCCCCCH-----HHHTTCHHHHHHHHTHHHHHHHHHHTT----T---TCEEEEEEEGGGSCCC-T------------
T ss_pred EEECcccCCH-----hhhhcCHHHHHHHHHHHHHHHHHHHHH----c---CCcEEEEecccEEeCC-C------------
Confidence 9999997521 113456788899999999999998743 2 2489999998765211 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
..+..+..+..+...|+.+|.+.+.+++.++ .++++++||.+.++... ...+ .+...
T Consensus 113 -----------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~--------~~~~ilRp~~v~G~~~~-~~~~---~~~~~ 169 (299)
T 1n2s_A 113 -----------DIPWQETDATSPLNVYGKTKLAGEKALQDNC--------PKHLIFRTSWVYAGKGN-NFAK---TMLRL 169 (299)
T ss_dssp -----------TCCBCTTSCCCCSSHHHHHHHHHHHHHHHHC--------SSEEEEEECSEECSSSC-CHHH---HHHHH
T ss_pred -----------CCCCCCCCCCCCccHHHHHHHHHHHHHHHhC--------CCeEEEeeeeecCCCcC-cHHH---HHHHH
Confidence 0011222233456689999999888876543 17889999999887432 1111 11111
Q ss_pred hH-HHH-------hcCCCChHHHHHHHHHhhcCCCCCC-CceEEccCC
Q 015844 328 FQ-KYI-------TKGYVSEDEAGKRLAQVVSDPSLTK-SGVYWSWNK 366 (399)
Q Consensus 328 ~~-~~~-------~~~~~~pee~a~~v~~l~~~~~~~~-~G~~~~~dg 366 (399)
.. ..+ ...++.++|+|+.+++++..+.... .|..+.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~ 217 (299)
T 1n2s_A 170 AKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVA 217 (299)
T ss_dssp HHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCC
T ss_pred HhcCCCEEeecCcccCCeeHHHHHHHHHHHHHHhccccccCceEEEeC
Confidence 00 000 1224568999999999987642112 244444444
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=169.70 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=132.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.++++++|||||+|+||.++++.|+++| +.|++++|+........+.+.. .+.++.++.+|++|.++++++++..
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 83 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-- 83 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS--
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC--
Confidence 35678999999999999999999999999 5999998864321111111110 1345778899999999998888753
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||||||..... ...+...+.+++|+.++.++++++... + .++||++||.+.+. ..... +
T Consensus 84 ---~~D~Vih~A~~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~--~~~iV~~SS~~vyg-~~~~~-~- 146 (699)
T 1z45_A 84 ---KIDSVIHFAGLKAVG-----ESTQIPLRYYHNNILGTVVLLELMQQY----N--VSKFVFSSSATVYG-DATRF-P- 146 (699)
T ss_dssp ---CCCEEEECCSCCCHH-----HHHHSHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEEEEGGGGC-CGGGS-T-
T ss_pred ---CCCEEEECCcccCcC-----ccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEECcHHHhC-CCccc-c-
Confidence 699999999975211 122345678999999999998876543 2 25999999976542 10000 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
...+..+..+..+...|+.||++.+.+++.++.+. ..|+++++++|+.+..+
T Consensus 147 -----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 147 -----------------NMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD--KKSWKFAILRYFNPIGA 198 (699)
T ss_dssp -----------------TCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS--TTSCEEEEEEECEEECC
T ss_pred -----------------ccCCccccCCCCCCChHHHHHHHHHHHHHHHHHhc--cCCCcEEEEEeccccCC
Confidence 00111222233456789999999999999988774 24899999999888664
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=147.75 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=129.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 88 SVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++|||||+|+||.++++.|+++ | ++|++++|+..+.+.+.. ..+.++.+|++|.+++.++++ .+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~-------~~ 66 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQALAA------QGITVRQADYGDEAALTSALQ-------GV 66 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTCHHHHH------TTCEEEECCTTCHHHHHHHTT-------TC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEEcChHhhhhhhc------CCCeEEEcCCCCHHHHHHHHh-------CC
Confidence 3899999999999999999998 8 599999998765443321 246788999999998887764 58
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||+||.. . ..|+.++.++++++... + .++||++||.....
T Consensus 67 d~vi~~a~~~-~----------------~~~~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~-------------- 109 (286)
T 2zcu_A 67 EKLLLISSSE-V----------------GQRAPQHRNVINAAKAA----G--VKFIAYTSLLHADT-------------- 109 (286)
T ss_dssp SEEEECC-------------------------CHHHHHHHHHHHH----T--CCEEEEEEETTTTT--------------
T ss_pred CEEEEeCCCC-c----------------hHHHHHHHHHHHHHHHc----C--CCEEEEECCCCCCC--------------
Confidence 9999999852 1 03666777777766543 2 25999999976531
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh-hh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR-LL 324 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~-~~ 324 (399)
....|+.+|.+.+.+.+. .|+++++|+||++.++.. ........ ..
T Consensus 110 ------------------------~~~~y~~sK~~~e~~~~~--------~~~~~~ilrp~~~~~~~~-~~~~~~~~~~~ 156 (286)
T 2zcu_A 110 ------------------------SPLGLADEHIETEKMLAD--------SGIVYTLLRNGWYSENYL-ASAPAALEHGV 156 (286)
T ss_dssp ------------------------CCSTTHHHHHHHHHHHHH--------HCSEEEEEEECCBHHHHH-TTHHHHHHHTE
T ss_pred ------------------------CcchhHHHHHHHHHHHHH--------cCCCeEEEeChHHhhhhH-HHhHHhhcCCc
Confidence 113699999998887642 289999999998866421 10000000 00
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 325 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 325 ~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........++.++|+|+.+++++.++. .+|..+.+++.
T Consensus 157 ~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~i~~~ 197 (286)
T 2zcu_A 157 FIGAAGDGKIASATRADYAAAAARVISEAG--HEGKVYELAGD 197 (286)
T ss_dssp EEESCTTCCBCCBCHHHHHHHHHHHHHSSS--CTTCEEEECCS
T ss_pred eeccCCCCccccccHHHHHHHHHHHhcCCC--CCCceEEEeCC
Confidence 000000111346799999999999998754 36766666664
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-17 Score=161.85 Aligned_cols=229 Identities=16% Similarity=0.094 Sum_probs=147.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH---HHHHHHHhc---------cCCCcEEEEEecCCCHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAG---------MAKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~---~~~~~~~~~---------~~~~~~~~~~~Dvs~~~~v~~ 153 (399)
.++||||||+|+||.++++.|.+.| ++|+++.|+... .+.+.+.+. ....++.++.+|+++.+++.
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCeEEEECCccchHHHHHHHHHhcC-CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 4799999999999999999999889 599999998653 222222221 12457999999999987776
Q ss_pred HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
...++|+|||||+... ....++..+++|+.++.++++++.. . ..+||++||... |.
T Consensus 228 -------~~~~~D~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~---~----~~~~v~iSS~~v--G~ 283 (508)
T 4f6l_B 228 -------LPENMDTIIHAGARTD--------HFGDDDEFEKVNVQGTVDVIRLAQQ---H----HARLIYVSTISV--GT 283 (508)
T ss_dssp -------CSSCCSEEEECCCC----------------CCHHHHHHHHHHHHHHHHT---T----TCEEEEEEESCT--TS
T ss_pred -------CccCCCEEEECCceec--------CCCCHHHHhhhHHHHHHHHHHHHHh---C----CCcEEEeCChhh--cc
Confidence 3458999999999752 1234567888999999999998865 1 259999999876 22
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCC---CChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD---FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
.....+.. .+..+..+ ..+...|+.||.+.+.+++.++. .|++++.++||.|.+
T Consensus 284 ~~~~~~~~------------------~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~gi~~~ilRp~~v~G 340 (508)
T 4f6l_B 284 YFDIDTED------------------VTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGNLTS 340 (508)
T ss_dssp EECTTCSC------------------CEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-----TTCEEEEEEECCEES
T ss_pred CCccCCcC------------------cccccccccccccCCCcHHHHHHHHHHHHHHHHH-----cCCCEEEEecceecc
Confidence 11100000 01111111 22557899999999988887642 389999999999988
Q ss_pred CCCccccchh--hhhhchhhHHH------H------hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 311 TGLFREHIPL--FRLLFPPFQKY------I------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 311 ~~~~~~~~~~--~~~~~~~~~~~------~------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
+......... ...+...+... + ...++.++|+|+++++++..+. .|..+.+.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~v~DvA~ai~~~~~~~~---~~~~~nl~~ 407 (508)
T 4f6l_B 341 PYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYHVLS 407 (508)
T ss_dssp CSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEEHHHHHHHHHHHTTBCC---SCSEEEESC
T ss_pred CCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceEEEEcHHHHHHHHHHHHhCCC---CCCEEEeCC
Confidence 7432211000 00000111111 0 1125678999999999998765 444444444
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=139.52 Aligned_cols=203 Identities=12% Similarity=0.033 Sum_probs=129.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++||||+ |.||.++++.|+++| +.|++++|+..+...... ..+.++.+|++|.+ ..++|
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~------------~~~~d 65 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPDQMEAIRA------SGAEPLLWPGEEPS------------LDGVT 65 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGGGHHHHHH------TTEEEEESSSSCCC------------CTTCC
T ss_pred CcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChhhhhhHhh------CCCeEEEecccccc------------cCCCC
Confidence 68999998 999999999999999 599999999876654432 35889999999932 45799
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+|||+|+..... +.. ++.++..+.+...+..+||++||...+. ...
T Consensus 66 ~vi~~a~~~~~~--------~~~--------------~~~l~~a~~~~~~~~~~~v~~Ss~~vyg-~~~----------- 111 (286)
T 3ius_A 66 HLLISTAPDSGG--------DPV--------------LAALGDQIAARAAQFRWVGYLSTTAVYG-DHD----------- 111 (286)
T ss_dssp EEEECCCCBTTB--------CHH--------------HHHHHHHHHHTGGGCSEEEEEEEGGGGC-CCT-----------
T ss_pred EEEECCCccccc--------cHH--------------HHHHHHHHHhhcCCceEEEEeecceecC-CCC-----------
Confidence 999999975221 010 1233333333111135999999976542 100
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh-c
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL-F 325 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~-~ 325 (399)
..+..+..+..+...|+.+|.+.+.+.+.+ .|+++++++||.+.++.... ........ .
T Consensus 112 ------------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~-------~~~~~~ilRp~~v~G~~~~~-~~~~~~~~~~ 171 (286)
T 3ius_A 112 ------------GAWVDETTPLTPTAARGRWRVMAEQQWQAV-------PNLPLHVFRLAGIYGPGRGP-FSKLGKGGIR 171 (286)
T ss_dssp ------------TCEECTTSCCCCCSHHHHHHHHHHHHHHHS-------TTCCEEEEEECEEEBTTBSS-STTSSSSCCC
T ss_pred ------------CCCcCCCCCCCCCCHHHHHHHHHHHHHHhh-------cCCCEEEEeccceECCCchH-HHHHhcCCcc
Confidence 011223334445678999999988877655 38999999999998763211 10000000 0
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
..........++..+|+|++++.++..+. .|..+.+.+
T Consensus 172 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~g~~~~i~~ 209 (286)
T 3ius_A 172 RIIKPGQVFSRIHVEDIAQVLAASMARPD---PGAVYNVCD 209 (286)
T ss_dssp EEECTTCCBCEEEHHHHHHHHHHHHHSCC---TTCEEEECC
T ss_pred ccCCCCcccceEEHHHHHHHHHHHHhCCC---CCCEEEEeC
Confidence 00000011235788999999999998865 454554443
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-16 Score=143.73 Aligned_cols=207 Identities=15% Similarity=0.105 Sum_probs=131.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++++||||+|+||.++++.|+++|.++|++++|+..+... +.+.. ..+.++.+|++|.+++.++++ .+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~--~~~~~~~~D~~d~~~l~~~~~-------~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL--QGAEVVQGDQDDQVIMELALN-------GA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH--TTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH--CCCEEEEecCCCHHHHHHHHh-------cC
Confidence 47899999999999999999999982389999998654321 11211 246788999999999888775 59
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||+|..... ..+.|+.+..++++++ ++.+ .++||++||. +..+..
T Consensus 74 d~vi~~a~~~~~~-------------~~~~~~~~~~~~~~aa----~~~g--v~~iv~~S~~-~~~~~~----------- 122 (299)
T 2wm3_A 74 YATFIVTNYWESC-------------SQEQEVKQGKLLADLA----RRLG--LHYVVYSGLE-NIKKLT----------- 122 (299)
T ss_dssp SEEEECCCHHHHT-------------CHHHHHHHHHHHHHHH----HHHT--CSEEEECCCC-CHHHHT-----------
T ss_pred CEEEEeCCCCccc-------------cchHHHHHHHHHHHHH----HHcC--CCEEEEEcCc-cccccC-----------
Confidence 9999999864110 1234555555555544 3333 3589996553 321100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-h-hh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-F-RL 323 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-~-~~ 323 (399)
.......|+.+|.+++.+.+. . |+++++|+||++.++... ...+. . ..
T Consensus 123 ---------------------~~~~~~~y~~sK~~~e~~~~~----~----gi~~~ilrp~~~~~~~~~-~~~~~~~~~g 172 (299)
T 2wm3_A 123 ---------------------AGRLAAAHFDGKGEVEEYFRD----I----GVPMTSVRLPCYFENLLS-HFLPQKAPDG 172 (299)
T ss_dssp ---------------------TTSCCCHHHHHHHHHHHHHHH----H----TCCEEEEECCEEGGGGGT-TTCCEECTTS
T ss_pred ---------------------CCcccCchhhHHHHHHHHHHH----C----CCCEEEEeecHHhhhchh-hcCCcccCCC
Confidence 001134699999998877642 2 899999999999876321 11110 0 00
Q ss_pred ----hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 324 ----LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 324 ----~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
+..+. ......++.++|+|+.++.++.++.. ..|+.+.+.|
T Consensus 173 ~~~~~~~~~-~~~~~~~i~~~Dva~~~~~~l~~~~~-~~g~~~~~~g 217 (299)
T 2wm3_A 173 KSYLLSLPT-GDVPMDGMSVSDLGPVVLSLLKMPEK-YVGQNIGLST 217 (299)
T ss_dssp SSEEECCCC-TTSCEEEECGGGHHHHHHHHHHSHHH-HTTCEEECCS
T ss_pred CEEEEEecC-CCCccceecHHHHHHHHHHHHcChhh-hCCeEEEeee
Confidence 00000 00112367999999999999976422 2566666655
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-15 Score=141.21 Aligned_cols=206 Identities=17% Similarity=0.170 Sum_probs=132.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh----HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~----~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
|..+++|||||+|+||+++++.|++.| +.|+++.|+. .+.+. .+.+. ..++.++.+|++|.+++.+++++.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~-~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~- 82 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKI-FKALE--DKGAIIVYGLINEQEAMEKILKEH- 82 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHH-HHHHH--HTTCEEEECCTTCHHHHHHHHHHT-
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHHH-HHHHH--hCCcEEEEeecCCHHHHHHHHhhC-
Confidence 446789999999999999999999999 5999999976 33322 22222 246788999999999999888753
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++|+|||+||.. |+.++.++++++...- . -.+||+ |+ .+..
T Consensus 83 ----~~d~Vi~~a~~~--------------------n~~~~~~l~~aa~~~g---~--v~~~v~-S~-~g~~-------- 123 (346)
T 3i6i_A 83 ----EIDIVVSTVGGE--------------------SILDQIALVKAMKAVG---T--IKRFLP-SE-FGHD-------- 123 (346)
T ss_dssp ----TCCEEEECCCGG--------------------GGGGHHHHHHHHHHHC---C--CSEEEC-SC-CSSC--------
T ss_pred ----CCCEEEECCchh--------------------hHHHHHHHHHHHHHcC---C--ceEEee-cc-cCCC--------
Confidence 699999999862 7778888888776542 0 136664 32 2210
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
..+..+..+...|+.+|.+.+.+.+. .|++++.|+||.+.+........+
T Consensus 124 ----------------------~~e~~~~~p~~~y~~sK~~~e~~l~~--------~g~~~tivrpg~~~g~~~~~~~~~ 173 (346)
T 3i6i_A 124 ----------------------VNRADPVEPGLNMYREKRRVRQLVEE--------SGIPFTYICCNSIASWPYYNNIHP 173 (346)
T ss_dssp ----------------------TTTCCCCTTHHHHHHHHHHHHHHHHH--------TTCCBEEEECCEESSCCCSCC---
T ss_pred ----------------------CCccCcCCCcchHHHHHHHHHHHHHH--------cCCCEEEEEecccccccCcccccc
Confidence 01112345677899999997766542 389999999999876422111100
Q ss_pred hh----hhhchhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 320 LF----RLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 320 ~~----~~~~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
.. ....... .......++.++|+|+.++.++.++.. .|..+.+.
T Consensus 174 ~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~i~ 222 (346)
T 3i6i_A 174 SEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRT--LNKSVHFR 222 (346)
T ss_dssp --CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGG--TTEEEECC
T ss_pred ccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccc--cCeEEEEe
Confidence 00 0000000 000012367899999999999987632 24444443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=145.14 Aligned_cols=205 Identities=15% Similarity=0.144 Sum_probs=128.9
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEec-CCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD-LASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-vs~~~~v~~~~~~~~~~~ 162 (399)
+.+++++||||+|+||.++++.|+++| ++|++++|+..... .+.+.. ..++.++.+| ++|.+++.++++
T Consensus 3 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~--~~~l~~-~~~v~~v~~D~l~d~~~l~~~~~------ 72 (352)
T 1xgk_A 3 QQKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLI--AEELQA-IPNVTLFQGPLLNNVPLMDTLFE------ 72 (352)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHH--HHHHHT-STTEEEEESCCTTCHHHHHHHHT------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCChhh--HHHHhh-cCCcEEEECCccCCHHHHHHHHh------
Confidence 346789999999999999999999999 59999999865432 112221 1357889999 999999888765
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc-ccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~-~~~~~~~~~~~~ 241 (399)
.+|+||||++... .+.|..+ .++++++. +.+. .++||++||... ..+
T Consensus 73 -~~d~Vi~~a~~~~----------------~~~~~~~-~~l~~aa~----~~g~-v~~~V~~SS~~~~~~~--------- 120 (352)
T 1xgk_A 73 -GAHLAFINTTSQA----------------GDEIAIG-KDLADAAK----RAGT-IQHYIYSSMPDHSLYG--------- 120 (352)
T ss_dssp -TCSEEEECCCSTT----------------SCHHHHH-HHHHHHHH----HHSC-CSEEEEEECCCGGGTS---------
T ss_pred -cCCEEEEcCCCCC----------------cHHHHHH-HHHHHHHH----HcCC-ccEEEEeCCccccccC---------
Confidence 5899999987531 0235544 55555543 3210 149999999762 210
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
......|+.||.+.+.+++. .|+++++|+||++.+. ......+..
T Consensus 121 --------------------------~~~~~~y~~sK~~~E~~~~~--------~gi~~~ivrpg~~g~~-~~~~~~~~~ 165 (352)
T 1xgk_A 121 --------------------------PWPAVPMWAPKFTVENYVRQ--------LGLPSTFVYAGIYNNN-FTSLPYPLF 165 (352)
T ss_dssp --------------------------SCCCCTTTHHHHHHHHHHHT--------SSSCEEEEEECEEGGG-CBSSSCSSC
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHH--------cCCCEEEEecceecCC-chhcccccc
Confidence 01234689999998877643 2899999999987543 221111110
Q ss_pred hhh---c-h-----hhHHHHhcCCCCh-HHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 322 RLL---F-P-----PFQKYITKGYVSE-DEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 322 ~~~---~-~-----~~~~~~~~~~~~p-ee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
... . . +........++.+ +|+|+.++.++.++.....|+.+.+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~ 219 (352)
T 1xgk_A 166 QMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALT 219 (352)
T ss_dssp BEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEEC
T ss_pred cccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEe
Confidence 000 0 0 0000001124677 89999999998764222234444443
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=141.26 Aligned_cols=193 Identities=16% Similarity=0.199 Sum_probs=122.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++|||||+|+||+++++.|++. | ++|+++.|+.++.... ...++.++.+|++|++++.++++ .+|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g-~~V~~~~R~~~~~~~~------~~~~v~~~~~D~~d~~~l~~~~~-------~~d 67 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHI-DHFHIGVRNVEKVPDD------WRGKVSVRQLDYFNQESMVEAFK-------GMD 67 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTC-TTEEEEESSGGGSCGG------GBTTBEEEECCTTCHHHHHHHTT-------TCS
T ss_pred EEEEEcCCchHHHHHHHHHhhCCC-CcEEEEECCHHHHHHh------hhCCCEEEEcCCCCHHHHHHHHh-------CCC
Confidence 5999999999999999999998 8 5999999987653321 12468899999999998887765 699
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||.... . ..|+.++.++++++ ++.+ .++||++||......
T Consensus 68 ~vi~~a~~~~~--------~-------~~~~~~~~~l~~aa----~~~g--v~~iv~~Ss~~~~~~-------------- 112 (289)
T 3e48_A 68 TVVFIPSIIHP--------S-------FKRIPEVENLVYAA----KQSG--VAHIIFIGYYADQHN-------------- 112 (289)
T ss_dssp EEEECCCCCCS--------H-------HHHHHHHHHHHHHH----HHTT--CCEEEEEEESCCSTT--------------
T ss_pred EEEEeCCCCcc--------c-------hhhHHHHHHHHHHH----HHcC--CCEEEEEcccCCCCC--------------
Confidence 99999986421 0 12555555555544 4443 359999999543210
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhch
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 326 (399)
.++. .++.. .+++.... ..|++++.|+||.+.++.. . ..+ .....
T Consensus 113 -------------------~~~~------~~~~~--~~~e~~~~----~~g~~~~ilrp~~~~~~~~-~-~~~--~~~~~ 157 (289)
T 3e48_A 113 -------------------NPFH------MSPYF--GYASRLLS----TSGIDYTYVRMAMYMDPLK-P-YLP--ELMNM 157 (289)
T ss_dssp -------------------CCST------THHHH--HHHHHHHH----HHCCEEEEEEECEESTTHH-H-HHH--HHHHH
T ss_pred -------------------CCCc------cchhH--HHHHHHHH----HcCCCEEEEeccccccccH-H-HHH--HHHHC
Confidence 0111 11111 01222222 2489999999999987622 1 100 00000
Q ss_pred hhHHHHh----cCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 327 PFQKYIT----KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 327 ~~~~~~~----~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.....+. ..++.++|+|+.+++++.++... |+.+.+.+
T Consensus 158 ~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~--g~~~~~~~ 199 (289)
T 3e48_A 158 HKLIYPAGDGRINYITRNDIARGVIAIIKNPDTW--GKRYLLSG 199 (289)
T ss_dssp TEECCCCTTCEEEEECHHHHHHHHHHHHHCGGGT--TCEEEECC
T ss_pred CCEecCCCCceeeeEEHHHHHHHHHHHHcCCCcC--CceEEeCC
Confidence 0000011 12678999999999999887543 66665553
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=136.19 Aligned_cols=202 Identities=14% Similarity=0.144 Sum_probs=125.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-------HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+++++||||+|+||.++++.|+++| ++|+++.|+. ++.+.+ +.+.. ..+.++.+|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~-~~l~~--~~v~~v~~D~~d~~~l~~~~~-- 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKEELI-DNYQS--LGVILLEGDINDHETLVKAIK-- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHHHHH-HHHHH--TTCEEEECCTTCHHHHHHHHT--
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHHHHH-HHHHh--CCCEEEEeCCCCHHHHHHHHh--
Confidence 4679999999999999999999999 5899999986 444332 22222 347789999999999887775
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+|+||||||... +.+..++++++.. .+. -++|| .|..+..
T Consensus 76 -----~~d~vi~~a~~~~--------------------~~~~~~l~~aa~~----~g~-v~~~v--~S~~g~~------- 116 (307)
T 2gas_A 76 -----QVDIVICAAGRLL--------------------IEDQVKIIKAIKE----AGN-VKKFF--PSEFGLD------- 116 (307)
T ss_dssp -----TCSEEEECSSSSC--------------------GGGHHHHHHHHHH----HCC-CSEEE--CSCCSSC-------
T ss_pred -----CCCEEEECCcccc--------------------cccHHHHHHHHHh----cCC-ceEEe--ecccccC-------
Confidence 5999999999641 2344455555433 210 13776 2433211
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
.. ......+....| .+|.+++.+.+ +. |++++.|+||++.+.... ...
T Consensus 117 ~~----------------------~~~~~~p~~~~y-~sK~~~e~~~~----~~----~i~~~~lrp~~~~~~~~~-~~~ 164 (307)
T 2gas_A 117 VD----------------------RHDAVEPVRQVF-EEKASIRRVIE----AE----GVPYTYLCCHAFTGYFLR-NLA 164 (307)
T ss_dssp TT----------------------SCCCCTTHHHHH-HHHHHHHHHHH----HH----TCCBEEEECCEETTTTGG-GTT
T ss_pred cc----------------------cccCCCcchhHH-HHHHHHHHHHH----Hc----CCCeEEEEcceeeccccc-ccc
Confidence 00 000123446789 99998877654 22 789999999999875321 111
Q ss_pred hhh-----hhhchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 319 PLF-----RLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 319 ~~~-----~~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
... ......+. ......++.++|+|+.++.++.++.. .|+.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~~~~ 216 (307)
T 2gas_A 165 QLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNT--LNKAVHIRL 216 (307)
T ss_dssp CTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGG--TTEEEECCC
T ss_pred ccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccc--cCceEEEeC
Confidence 100 00000000 00112357999999999999987642 355444443
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=143.03 Aligned_cols=189 Identities=14% Similarity=0.080 Sum_probs=132.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|+||+++++.|+++|...|+.++|+ +|.++++++++ ++|+
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------------~d~~~l~~~~~-------~~d~ 49 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------------TKEEELESALL-------KADF 49 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------------CCHHHHHHHHH-------HCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------------CCHHHHHHHhc-------cCCE
Confidence 699999999999999999999993155555443 78888888876 4999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+||.... +++...+++|+.++.++++++.. .+. ..+||++||....
T Consensus 50 Vih~a~~~~~---------~~~~~~~~~n~~~~~~l~~a~~~----~~~-~~~~v~~Ss~~~~----------------- 98 (369)
T 3st7_A 50 IVHLAGVNRP---------EHDKEFSLGNVSYLDHVLDILTR----NTK-KPAILLSSSIQAT----------------- 98 (369)
T ss_dssp EEECCCSBCT---------TCSTTCSSSCCBHHHHHHHHHTT----CSS-CCEEEEEEEGGGG-----------------
T ss_pred EEECCcCCCC---------CCHHHHHHHHHHHHHHHHHHHHH----hCC-CCeEEEeCchhhc-----------------
Confidence 9999997632 24456788999999999887642 221 1389999998765
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
+...|+.+|.+.+.+.+.++++. |++++.++|+.+..+............+...
T Consensus 99 ----------------------~~~~Y~~sK~~~E~~~~~~~~~~----g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~ 152 (369)
T 3st7_A 99 ----------------------QDNPYGESKLQGEQLLREYAEEY----GNTVYIYRWPNLFGKWCKPNYNSVIATFCYK 152 (369)
T ss_dssp ----------------------SCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCTTSSCHHHHHHHH
T ss_pred ----------------------CCCCchHHHHHHHHHHHHHHHHh----CCCEEEEECCceeCCCCCCCcchHHHHHHHH
Confidence 14579999999999999988875 7999999999998763322111111111100
Q ss_pred hHH---------HHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 328 FQK---------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 328 ~~~---------~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
... .....++.++|+|+.++.++..+... .|.++.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~-~~~~~~i~~ 199 (369)
T 3st7_A 153 IARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTI-ENGVPTVPN 199 (369)
T ss_dssp HHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCCE-ETTEECCSC
T ss_pred HHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCccc-CCceEEeCC
Confidence 000 00112467999999999999876432 255555544
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=137.79 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=135.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCC----cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga----~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++++|||||+|+||.++++.|+++|. +.|++++|+..... . ...++.++.+|++|.+++.++++.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~--~~~~~~~~~~Dl~d~~~~~~~~~~---- 69 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H--EDNPINYVQCDISDPDDSQAKLSP---- 69 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C--CSSCCEEEECCTTSHHHHHHHHTT----
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c--ccCceEEEEeecCCHHHHHHHHhc----
Confidence 46899999999999999999999992 38999999754322 1 234678899999999988877653
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEE-------EEeccccccCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLI-------IVGSITGNTNTL 234 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV-------~vSS~~~~~~~~ 234 (399)
.+++|+|||+||... ++++..+++|+.++.++++++.+.... -.++| ++||...+. ..
T Consensus 70 ~~~~d~vih~a~~~~----------~~~~~~~~~n~~~~~~l~~a~~~~~~~----~~~~v~~~g~~i~~Ss~~vyg-~~ 134 (364)
T 2v6g_A 70 LTDVTHVFYVTWANR----------STEQENCEANSKMFRNVLDAVIPNCPN----LKHISLQTGRKHYMGPFESYG-KI 134 (364)
T ss_dssp CTTCCEEEECCCCCC----------SSHHHHHHHHHHHHHHHHHHHTTTCTT----CCEEEEECCTHHHHCCGGGTT-TS
T ss_pred CCCCCEEEECCCCCc----------chHHHHHHHhHHHHHHHHHHHHHhccc----cceEEeccCceEEEechhhcc-cc
Confidence 224999999999741 246778999999999999988654211 23776 677765431 10
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCC-ChhhhHHHhHHHHHHHHHHHHHhhccCCc-eEEEEeeCCcccCCC
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETG-IAFASLYPGCIATTG 312 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~~g-i~v~~v~PG~v~T~~ 312 (399)
. + ...+..+..+. +....|.. .+.+++.++.+ .| +++++++|+.|..+.
T Consensus 135 ~---~------------------~~~~~~E~~~~~~~~~~y~~----~E~~~~~~~~~----~~~~~~~ilRp~~v~G~~ 185 (364)
T 2v6g_A 135 E---S------------------HDPPYTEDLPRLKYMNFYYD----LEDIMLEEVEK----KEGLTWSVHRPGNIFGFS 185 (364)
T ss_dssp C---C------------------CCSSBCTTSCCCSSCCHHHH----HHHHHHHHHTT----STTCEEEEEEESSEECCC
T ss_pred c---c------------------CCCCCCccccCCccchhhHH----HHHHHHHHhhc----CCCceEEEECCCceeCCC
Confidence 0 0 00011111111 12334632 34444444432 35 999999999998874
Q ss_pred Cccccchhhhh-hchhh---HHH----Hh--------cCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 313 LFREHIPLFRL-LFPPF---QKY----IT--------KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 313 ~~~~~~~~~~~-~~~~~---~~~----~~--------~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
........... +...+ ... +. .-....+|+|++++.++..+. ..|..+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~--~~g~~~ni~~ 253 (364)
T 2v6g_A 186 PYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPY--AKNEAFNVSN 253 (364)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGG--GTTEEEEECC
T ss_pred CCcccchHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCC--CCCceEEecC
Confidence 32111100000 01111 000 00 112344889999999987653 3565555544
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=143.49 Aligned_cols=215 Identities=16% Similarity=0.113 Sum_probs=136.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++||||||+|+||.++++.|+++| +.|++++|+.... ..+.+|+.+.. .+.+.++
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~~~--------------~~v~~d~~~~~---------~~~l~~~ 202 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEPKP--------------GKRFWDPLNPA---------SDLLDGA 202 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSCCT--------------TCEECCTTSCC---------TTTTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCc--------------cceeecccchh---------HHhcCCC
Confidence 5689999999999999999999999 5999999986431 12567876431 2233579
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||+||..... ..+.+.++..+++|+.++.++++++.. +.+ .++||++||...+.....
T Consensus 203 D~Vih~A~~~~~~----~~~~~~~~~~~~~Nv~gt~~ll~a~a~---~~~--~~r~V~~SS~~vyg~~~~---------- 263 (516)
T 3oh8_A 203 DVLVHLAGEPIFG----RFNDSHKEAIRESRVLPTKFLAELVAE---STQ--CTTMISASAVGFYGHDRG---------- 263 (516)
T ss_dssp SEEEECCCC---------CCGGGHHHHHHHTHHHHHHHHHHHHH---CSS--CCEEEEEEEGGGGCSEEE----------
T ss_pred CEEEECCCCcccc----ccchhHHHHHHHHHHHHHHHHHHHHHh---cCC--CCEEEEeCcceEecCCCC----------
Confidence 9999999975322 346677888999999999999997442 222 359999999765420000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
..+..+..+. +...|+.+|...+.+.+. . ...|+++++|+||.|.++.- ...+......
T Consensus 264 -------------~~~~~E~~~~-~~~~y~~~~~~~E~~~~~----~-~~~gi~~~ilRp~~v~Gp~~--~~~~~~~~~~ 322 (516)
T 3oh8_A 264 -------------DEILTEESES-GDDFLAEVCRDWEHATAP----A-SDAGKRVAFIRTGVALSGRG--GMLPLLKTLF 322 (516)
T ss_dssp -------------EEEECTTSCC-CSSHHHHHHHHHHHTTHH----H-HHTTCEEEEEEECEEEBTTB--SHHHHHHHTT
T ss_pred -------------CCccCCCCCC-CcChHHHHHHHHHHHHHH----H-HhCCCCEEEEEeeEEECCCC--ChHHHHHHHH
Confidence 0011111222 445688888776554332 2 23499999999999988741 1111110000
Q ss_pred hh-hHHHH-----hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 326 PP-FQKYI-----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 326 ~~-~~~~~-----~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.. ..... ...++.++|+|++++.++..+. ..|.|...++
T Consensus 323 ~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~--~~g~~ni~~~ 367 (516)
T 3oh8_A 323 STGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQ--ISGPINAVAP 367 (516)
T ss_dssp C---CCCCTTSCCEECEEEHHHHHHHHHHHHHCTT--CCEEEEESCS
T ss_pred HhCCCcccCCCCceEceEeHHHHHHHHHHHHhCcc--cCCcEEEECC
Confidence 00 00000 1235688999999999998764 4566654444
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=131.83 Aligned_cols=197 Identities=16% Similarity=0.141 Sum_probs=122.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-----HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++++||||+|+||.++++.|+++| ++|+++.|+. ++.+.+ +.+. ...+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~-~~~~--~~~~~~~~~D~~d~~~l~~~~~---- 75 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQML-LYFK--QLGAKLIEASLDDHQRLVDALK---- 75 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHH-HHHH--TTTCEEECCCSSCHHHHHHHHT----
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcccchhHHHHH-HHHH--hCCeEEEeCCCCCHHHHHHHHh----
Confidence 3579999999999999999999999 5999999983 333222 2222 2357889999999999888775
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+|+|||++|..... .|+.+..++++++.. .+. -++||+ |..+.. ..
T Consensus 76 ---~~d~vi~~a~~~~~~----------------~~~~~~~~l~~aa~~----~g~-v~~~v~--S~~g~~---~~---- 122 (313)
T 1qyd_A 76 ---QVDVVISALAGGVLS----------------HHILEQLKLVEAIKE----AGN-IKRFLP--SEFGMD---PD---- 122 (313)
T ss_dssp ---TCSEEEECCCCSSSS----------------TTTTTHHHHHHHHHH----SCC-CSEEEC--SCCSSC---TT----
T ss_pred ---CCCEEEECCccccch----------------hhHHHHHHHHHHHHh----cCC-CceEEe--cCCcCC---cc----
Confidence 599999999975221 256666666666543 220 247774 332211 00
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
. + .....+....| .+|.+.+.+.+ + .|++++.|+||++.+..+ ......
T Consensus 123 ~--~-------------------~~~~~p~~~~y-~sK~~~e~~~~----~----~g~~~~ilrp~~~~~~~~-~~~~~~ 171 (313)
T 1qyd_A 123 I--M-------------------EHALQPGSITF-IDKRKVRRAIE----A----ASIPYTYVSSNMFAGYFA-GSLAQL 171 (313)
T ss_dssp S--C-------------------CCCCSSTTHHH-HHHHHHHHHHH----H----TTCCBCEEECCEEHHHHT-TTSSCT
T ss_pred c--c-------------------ccCCCCCcchH-HHHHHHHHHHH----h----cCCCeEEEEeceeccccc-cccccc
Confidence 0 0 00112335678 99998777653 2 378999999998865311 100000
Q ss_pred ------hhhhchhhH-HHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 321 ------FRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 321 ------~~~~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
.......+. ......++.++|+|+.++.++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~ 212 (313)
T 1qyd_A 172 DGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQ 212 (313)
T ss_dssp TCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGG
T ss_pred cccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCcc
Confidence 000000000 0011235789999999999998764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=134.47 Aligned_cols=202 Identities=10% Similarity=0.051 Sum_probs=122.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh------HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~------~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+++++||||+|+||.++++.|+++| +.|++++|+. +..+. .+.+.. ..+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~-l~~~~~--~~v~~v~~D~~d~~~l~~a~~--- 76 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQL-REEFRS--MGVTIIEGEMEEHEKMVSVLK--- 76 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHHHH-HHHHHH--TTCEEEECCTTCHHHHHHHHT---
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHHHH-HHHhhc--CCcEEEEecCCCHHHHHHHHc---
Confidence 3579999999999999999999999 5899999985 22222 222221 357889999999999888775
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.+|+|||++|... +.+..++++++.. .+. -++|| .|..+.. +
T Consensus 77 ----~~d~vi~~a~~~~--------------------~~~~~~l~~aa~~----~g~-v~~~v--~S~~g~~-------~ 118 (321)
T 3c1o_A 77 ----QVDIVISALPFPM--------------------ISSQIHIINAIKA----AGN-IKRFL--PSDFGCE-------E 118 (321)
T ss_dssp ----TCSEEEECCCGGG--------------------SGGGHHHHHHHHH----HCC-CCEEE--CSCCSSC-------G
T ss_pred ----CCCEEEECCCccc--------------------hhhHHHHHHHHHH----hCC-ccEEe--ccccccC-------c
Confidence 5999999998641 2333444554433 220 13776 3433210 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+ ......+....| .+|.+++.+.+ +. |++++.|+||++.+..+ .....
T Consensus 119 -----~-----------------~~~~~~p~~~~y-~sK~~~e~~~~----~~----~~~~~~lrp~~~~~~~~-~~~~~ 166 (321)
T 3c1o_A 119 -----D-----------------RIKPLPPFESVL-EKKRIIRRAIE----AA----ALPYTYVSANCFGAYFV-NYLLH 166 (321)
T ss_dssp -----G-----------------GCCCCHHHHHHH-HHHHHHHHHHH----HH----TCCBEEEECCEEHHHHH-HHHHC
T ss_pred -----c-----------------ccccCCCcchHH-HHHHHHHHHHH----Hc----CCCeEEEEeceeccccc-ccccc
Confidence 0 000112335689 99999887764 22 78888899998865311 00000
Q ss_pred -----hhhhhchhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 -----LFRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 -----~~~~~~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
........+ .......++.++|+|+.++.++.++.. .|+.+.+.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~g~~~~~~g 217 (321)
T 3c1o_A 167 PSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRC--CNRIVIYRP 217 (321)
T ss_dssp CCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGG--TTEEEECCC
T ss_pred ccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccc--cCeEEEEeC
Confidence 000000000 000112367999999999999987643 356555543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=127.40 Aligned_cols=201 Identities=17% Similarity=0.164 Sum_probs=120.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH------HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL------KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~------~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.++++||||+|+||.++++.|+++| +.|+++.|+.. +.+. .+.+. ...+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~-~~~l~--~~~v~~v~~D~~d~~~l~~~~~--- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQL-LESFK--ASGANIVHGSIDDHASLVEAVK--- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHH-HHHHH--TTTCEEECCCTTCHHHHHHHHH---
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHHHH-HHHHH--hCCCEEEEeccCCHHHHHHHHc---
Confidence 4679999999999999999999999 58999999732 2221 22222 2357889999999999888776
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
.+|+|||++|... +.+..++++++.. .+. -++||+ |..+.. .
T Consensus 77 ----~~d~vi~~a~~~~--------------------~~~~~~l~~aa~~----~g~-v~~~v~--S~~g~~-------~ 118 (308)
T 1qyc_A 77 ----NVDVVISTVGSLQ--------------------IESQVNIIKAIKE----VGT-VKRFFP--SEFGND-------V 118 (308)
T ss_dssp ----TCSEEEECCCGGG--------------------SGGGHHHHHHHHH----HCC-CSEEEC--SCCSSC-------T
T ss_pred ----CCCEEEECCcchh--------------------hhhHHHHHHHHHh----cCC-CceEee--cccccC-------c
Confidence 5999999998641 2233444554433 220 147763 332210 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
. ......+....| .+|.+++.+.+ +. |++++.|+||++.+... .....
T Consensus 119 ~----------------------~~~~~~p~~~~y-~sK~~~e~~~~----~~----~~~~~~~r~~~~~~~~~-~~~~~ 166 (308)
T 1qyc_A 119 D----------------------NVHAVEPAKSVF-EVKAKVRRAIE----AE----GIPYTYVSSNCFAGYFL-RSLAQ 166 (308)
T ss_dssp T----------------------SCCCCTTHHHHH-HHHHHHHHHHH----HH----TCCBEEEECCEEHHHHT-TTTTC
T ss_pred c----------------------ccccCCcchhHH-HHHHHHHHHHH----hc----CCCeEEEEeceeccccc-ccccc
Confidence 0 000112345678 99998777654 22 78888999998865311 10000
Q ss_pred h------hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 320 L------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 320 ~------~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
. ...............++.++|+|+.++.++.++.. .|..+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~~~ 216 (308)
T 1qyc_A 167 AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRT--LNKTLYLR 216 (308)
T ss_dssp TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGG--TTEEEECC
T ss_pred ccccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccc--cCeEEEEe
Confidence 0 00000000000112357899999999999887532 34444443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-14 Score=130.55 Aligned_cols=200 Identities=14% Similarity=0.105 Sum_probs=119.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++||||+|+||.++++.|+++| ++|+++.|+.. ..+.. +.+.. ..+.++.+|++|.+++.++++ .+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~-~~l~~--~~v~~v~~Dl~d~~~l~~a~~-------~~ 80 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLL-DEFQS--LGAIIVKGELDEHEKLVELMK-------KV 80 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSCHHHH-HHHHH--TTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred CeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCchhhHH-HHhhc--CCCEEEEecCCCHHHHHHHHc-------CC
Confidence 579999999999999999999999 59999999864 22222 22221 347789999999999888775 59
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||+++... +.+..++++++. +.+. .++||+ |..+.. ...
T Consensus 81 d~vi~~a~~~~--------------------~~~~~~l~~aa~----~~g~-v~~~v~--S~~g~~-------~~~---- 122 (318)
T 2r6j_A 81 DVVISALAFPQ--------------------ILDQFKILEAIK----VAGN-IKRFLP--SDFGVE-------EDR---- 122 (318)
T ss_dssp SEEEECCCGGG--------------------STTHHHHHHHHH----HHCC-CCEEEC--SCCSSC-------TTT----
T ss_pred CEEEECCchhh--------------------hHHHHHHHHHHH----hcCC-CCEEEe--eccccC-------ccc----
Confidence 99999998641 223344444443 3220 137763 332210 000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh--hhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL--FRL 323 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~--~~~ 323 (399)
.....+....| .+|.+++.+.+ + .|++++.|+||++... +....... ...
T Consensus 123 ------------------~~~~~p~~~~y-~sK~~~e~~~~----~----~~~~~~~lr~~~~~~~-~~~~~~~~~~~~~ 174 (318)
T 2r6j_A 123 ------------------INALPPFEALI-ERKRMIRRAIE----E----ANIPYTYVSANCFASY-FINYLLRPYDPKD 174 (318)
T ss_dssp ------------------CCCCHHHHHHH-HHHHHHHHHHH----H----TTCCBEEEECCEEHHH-HHHHHHCTTCCCS
T ss_pred ------------------ccCCCCcchhH-HHHHHHHHHHH----h----cCCCeEEEEcceehhh-hhhhhccccCCCC
Confidence 00112335678 99998777654 2 3788889999987542 11000000 000
Q ss_pred hchhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 324 LFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 324 ~~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
...... ......++.++|+|+.++.++.++.. .|..+.+.
T Consensus 175 ~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~~~ 215 (318)
T 2r6j_A 175 EITVYGTGEAKFAMNYEQDIGLYTIKVATDPRA--LNRVVIYR 215 (318)
T ss_dssp EEEEETTSCCEEEEECHHHHHHHHHHHTTCGGG--TTEEEECC
T ss_pred ceEEecCCCceeeEeeHHHHHHHHHHHhcCccc--cCeEEEec
Confidence 000000 00112357899999999999987542 24444443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-13 Score=125.71 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=85.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|++|||||+||||+++++.|+++|+ +|++++|+.++.+++.+++... ..+.++.+|+++.++++++++
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~-~~~~~~~~D~~~~~~~~~~~~------ 187 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR-FKVNVTAAETADDASRAEAVK------ 187 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH-HTCCCEEEECCSHHHHHHHTT------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhc-CCcEEEEecCCCHHHHHHHHH------
Confidence 46899999999999999999999999997 7999999988887777666432 235677899999998877665
Q ss_pred CCccEEEecCcccCCCCCCCCCCh-hhhhHhhhchhhHHH
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTA-EGFELSVGTNHLGHF 201 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~-~~~~~~~~~N~~g~~ 201 (399)
.+|+||||+|+.....++.+.+. ++|+.++++|+.+++
T Consensus 188 -~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 188 -GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp -TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred -hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence 48999999986422222223343 667778899988776
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-10 Score=106.53 Aligned_cols=210 Identities=12% Similarity=0.085 Sum_probs=125.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+||||||+|.||.++++.|.++| +.|+++.|++.. ..+ ..| .+ ..+....+|.
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G-~~V~~l~R~~~~------------~~~---~~~-----~~------~~~~l~~~d~ 54 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARG-HEVTLVSRKPGP------------GRI---TWD-----EL------AASGLPSCDA 54 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCT------------TEE---EHH-----HH------HHHCCCSCSE
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCc------------Cee---ecc-----hh------hHhhccCCCE
Confidence 59999999999999999999999 699999997432 111 111 11 1233467999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
+||.||.... ......+....+..++.|+.++.++.+.+... +.+...+|+.||...+. ...
T Consensus 55 vihla~~~i~-~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~----~~~~~~~i~~Ss~~vyg-~~~------------ 116 (298)
T 4b4o_A 55 AVNLAGENIL-NPLRRWNETFQKEVLGSRLETTQLLAKAITKA----PQPPKAWVLVTGVAYYQ-PSL------------ 116 (298)
T ss_dssp EEECCCCCSS-CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHC----SSCCSEEEEEEEGGGSC-CCS------------
T ss_pred EEEeccCccc-chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHh----CCCceEEEEEeeeeeec-CCC------------
Confidence 9999986422 22223466677788899999988887765432 21123577777765542 100
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
..+..+..+..+...|+..|...+. +... ...++++..+.||.|..+.- .. ...+...
T Consensus 117 -----------~~~~~E~~p~~~~~~~~~~~~~~e~-----~~~~-~~~~~~~~~~r~~~v~g~~~--~~---~~~~~~~ 174 (298)
T 4b4o_A 117 -----------TAEYDEDSPGGDFDFFSNLVTKWEA-----AARL-PGDSTRQVVVRSGVVLGRGG--GA---MGHMLLP 174 (298)
T ss_dssp -----------SCCBCTTCCCSCSSHHHHHHHHHHH-----HHCC-SSSSSEEEEEEECEEECTTS--HH---HHHHHHH
T ss_pred -----------CCcccccCCccccchhHHHHHHHHH-----HHHh-hccCCceeeeeeeeEEcCCC--Cc---hhHHHHH
Confidence 0112222333444455555544222 1122 45699999999999987631 11 1111111
Q ss_pred hHHH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 328 FQKY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 328 ~~~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... ....++..+|+++++++++.++. ..|.|.-.++
T Consensus 175 ~~~~~~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~--~~g~yn~~~~ 220 (298)
T 4b4o_A 175 FRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANH--VHGVLNGVAP 220 (298)
T ss_dssp HHTTCCCCBTTSCSBCCEEEHHHHHHHHHHHHHCTT--CCEEEEESCS
T ss_pred HhcCCcceecccCceeecCcHHHHHHHHHHHHhCCC--CCCeEEEECC
Confidence 1100 01124578999999999998764 4676644443
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-10 Score=105.80 Aligned_cols=172 Identities=10% Similarity=0.013 Sum_probs=108.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC------cEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGK------WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga------~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.+++||||+|.||..++..|++.|. ..|+++++.. +..+.....+......+ + .|+.+.+++.+.+
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~--~-~di~~~~~~~~a~--- 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL--L-AGLEATDDPKVAF--- 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT--E-EEEEEESCHHHHT---
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc--c-CCeEeccChHHHh---
Confidence 3699999999999999999999883 2789998864 22332222332211111 2 4665544443333
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
...|+|||.||..... . +.....+++|+.++.++++++..+- .++++++++|+........
T Consensus 79 ----~~~D~Vih~Ag~~~~~----~---~~~~~~~~~Nv~~t~~l~~a~~~~~----~~~~~vvv~snp~~~~~~~---- 139 (327)
T 1y7t_A 79 ----KDADYALLVGAAPRKA----G---MERRDLLQVNGKIFTEQGRALAEVA----KKDVKVLVVGNPANTNALI---- 139 (327)
T ss_dssp ----TTCSEEEECCCCCCCT----T---CCHHHHHHHHHHHHHHHHHHHHHHS----CTTCEEEECSSSHHHHHHH----
T ss_pred ----CCCCEEEECCCcCCCC----C---CCHHHHHHHHHHHHHHHHHHHHhhc----CCCeEEEEeCCchhhhHHH----
Confidence 2699999999975321 1 2345678999999999999887652 0135888887654211000
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCC-CCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
..+.. ++++...|+.||...+.+.+.++..+ |+.+..|+|.+|..
T Consensus 140 -----------------------~~~~~~~~~p~~~yg~tkl~~er~~~~~a~~~----g~~~~~vr~~~V~G 185 (327)
T 1y7t_A 140 -----------------------AYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKT----GTGVDRIRRMTVWG 185 (327)
T ss_dssp -----------------------HHHTCTTSCGGGEEECCHHHHHHHHHHHHHHH----TCCGGGEECCEEEB
T ss_pred -----------------------HHHHcCCCChhheeccchHHHHHHHHHHHHHh----CcChhheeeeEEEc
Confidence 00001 24456679999998888888888776 55555566555433
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=94.47 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=60.0
Q ss_pred ccCCCEEEEEcC----------------CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC
Q 015844 83 TLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (399)
Q Consensus 83 ~l~~k~~lVTG~----------------s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs 146 (399)
+|.||++||||| +||||+++|+.|+++|| .|++++++.. + ... ..+ -.+|++
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga-~V~l~~~~~~-l-------~~~-~g~--~~~dv~ 72 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPVS-L-------PTP-PFV--KRVDVM 72 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSCC-C-------CCC-TTE--EEEECC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC-EEEEEECCcc-c-------ccC-CCC--eEEccC
Confidence 578999999999 69999999999999997 8888877641 1 111 112 256888
Q ss_pred CHHHHHHHHHHHHHcCCCccEEEecCccc
Q 015844 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (399)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 175 (399)
+.++ +++.+.+.++++|++|||||+.
T Consensus 73 ~~~~---~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 73 TALE---MEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp SHHH---HHHHHHHHGGGCSEEEECCBCC
T ss_pred cHHH---HHHHHHHhcCCCCEEEECCccc
Confidence 8554 5566667788999999999986
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-08 Score=76.70 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=61.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++++|+|+ |++|.++++.|.+.|.+.|++++|+.++.+... ...+.++.+|+++.+++.++++ .+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~-------~~ 70 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN------RMGVATKQVDAKDEAGLAKALG-------GF 70 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH------TTTCEEEECCTTCHHHHHHHTT-------TC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH------hCCCcEEEecCCCHHHHHHHHc-------CC
Confidence 468999999 999999999999999558999999987766554 1345678899999988777653 69
Q ss_pred cEEEecCcc
Q 015844 166 DVLVCNAAV 174 (399)
Q Consensus 166 d~lv~nAg~ 174 (399)
|+||++++.
T Consensus 71 d~vi~~~~~ 79 (118)
T 3ic5_A 71 DAVISAAPF 79 (118)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCCc
Confidence 999999863
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.3e-08 Score=86.52 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCCEEEEEcC----------------CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH
Q 015844 85 RKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148 (399)
Q Consensus 85 ~~k~~lVTG~----------------s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~ 148 (399)
.||++||||| +|++|.++|+.|+++|| .|++++|.... .. .....+. ..|+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga-~V~lv~~~~~~-~~------~~~~~~~--~~~v~-- 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY-EVCLITTKRAL-KP------EPHPNLS--IREIT-- 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC-EEEEEECTTSC-CC------CCCTTEE--EEECC--
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC-EEEEEeCCccc-cc------cCCCCeE--EEEHh--
Confidence 5899999999 88899999999999997 89999887421 00 0011232 33555
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~ 175 (399)
+++++++.+.+.++++|++|+||++.
T Consensus 70 -s~~em~~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 70 -NTKDLLIEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp -SHHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred -HHHHHHHHHHHhcCCCCEEEEcCccc
Confidence 45556666666778899999999986
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-08 Score=84.95 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHcCCcEEEEeecChHHHH---HHHHHhccCCCcEEEEEecCCCH--HHHHHHHHHHHHcCCCccEEEec
Q 015844 97 GLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAGMAKENYTIMHLDLASL--DSVRQFVDTFRRSGRPLDVLVCN 171 (399)
Q Consensus 97 gIG~aia~~l~~~Ga~~vv~~~r~~~~~~---~~~~~~~~~~~~~~~~~~Dvs~~--~~v~~~~~~~~~~~g~id~lv~n 171 (399)
-++.++++.|++.|+ +|++..|+..... +..+.+...|.++..+.+|++++ ++++++++.+.+.+|+ |+||||
T Consensus 27 ~p~~a~a~~La~~Ga-~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVnn 104 (157)
T 3gxh_A 27 LPNEQQFSLLKQAGV-DVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVHC 104 (157)
T ss_dssp CCCHHHHHHHHHTTC-CEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEEC
T ss_pred CCCHHHHHHHHHcCC-CEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEEC
Confidence 477999999999997 7888877643321 12334445577888999999999 9999999999998999 999999
Q ss_pred Cccc
Q 015844 172 AAVY 175 (399)
Q Consensus 172 Ag~~ 175 (399)
||+.
T Consensus 105 Agg~ 108 (157)
T 3gxh_A 105 LANY 108 (157)
T ss_dssp SBSH
T ss_pred CCCC
Confidence 9974
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-07 Score=88.66 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=70.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC--cEEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga--~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++++|+|+ ||||+++++.|+++|. ..|++++|+.++++.+.+.+... +.++..+.+|++|.+++++++++.
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~----- 75 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV----- 75 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-----
Confidence 47899999 8999999999999983 38999999999988888777532 246788999999999999998875
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
++|+||||+|..
T Consensus 76 ~~DvVin~ag~~ 87 (405)
T 4ina_A 76 KPQIVLNIALPY 87 (405)
T ss_dssp CCSEEEECSCGG
T ss_pred CCCEEEECCCcc
Confidence 699999999864
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.5e-08 Score=97.28 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=68.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++|||| ||+|+++++.|++.|+ +|++++|+.++++++.+.+. .++. ++.| ++++ ..
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~-~V~i~~R~~~~a~~la~~~~---~~~~----~~~d---l~~~------~~ 422 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGA-KVVIANRTYERALELAEAIG---GKAL----SLTD---LDNY------HP 422 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC--CEEEESSHHHHHHHHHHTT---C-CE----ETTT---TTTC--------
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC---Ccee----eHHH---hhhc------cc
Confidence 467899999999 5999999999999997 89999999988888777662 2221 2222 1000 11
Q ss_pred CCccEEEecCcccCCC----CCCCCCChhhhhHhhhchhhHHH
Q 015844 163 RPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHF 201 (399)
Q Consensus 163 g~id~lv~nAg~~~~~----~~~~~~~~~~~~~~~~~N~~g~~ 201 (399)
+.+|+||||+|+.... .++.+.+.+.|..++++|+.+..
T Consensus 423 ~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~ 465 (523)
T 2o7s_A 423 EDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI 465 (523)
T ss_dssp CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSS
T ss_pred cCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCcc
Confidence 3589999999974221 34555677889999999998753
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-09 Score=105.38 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=39.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~ 129 (399)
.+.||+++|||++ +||+++|+.|...|+ +|+++++++........
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~ 306 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGA-RVIVTEIDPICALQATM 306 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 5789999999987 999999999999997 99999999876655443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-07 Score=88.80 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++++|+| +|+||+++++.|++.|+ .|++++|+.++++.+.+.+ ..+..+.+|++|.+++.++++ .
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~----~~~~~~~~Dv~d~~~l~~~l~-------~ 68 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEVA-------K 68 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTC----TTEEEEECCTTCHHHHHHHHT-------T
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhc----CCceEEEeecCCHHHHHHHHc-------C
Confidence 468899997 79999999999999995 8999999987665543322 246788899999988877664 6
Q ss_pred ccEEEecCccc
Q 015844 165 LDVLVCNAAVY 175 (399)
Q Consensus 165 id~lv~nAg~~ 175 (399)
+|+||||++..
T Consensus 69 ~DvVIn~a~~~ 79 (450)
T 1ff9_A 69 HDLVISLIPYT 79 (450)
T ss_dssp SSEEEECCC--
T ss_pred CcEEEECCccc
Confidence 99999999863
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.7e-07 Score=86.50 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=74.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+++++|+|+ |+||+++++.+...|+ +|++++|+.++.+.+.+.+ +.. +.+|.++.+++++++.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g~~---~~~~~~~~~~l~~~~~------ 228 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---GGR---VITLTATEANIKKSVQ------ 228 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TTS---EEEEECCHHHHHHHHH------
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---Cce---EEEecCCHHHHHHHHh------
Confidence 477899999999 9999999999999997 9999999987776655433 223 4568888887776654
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
..|+||+++|......+ ..+.+..++.|++ ++.||++++..+
T Consensus 229 -~~DvVi~~~g~~~~~~~--------------------~li~~~~l~~mk~----gg~iV~v~~~~g 270 (369)
T 2eez_A 229 -HADLLIGAVLVPGAKAP--------------------KLVTRDMLSLMKE----GAVIVDVAVDQG 270 (369)
T ss_dssp -HCSEEEECCC---------------------------CCSCHHHHTTSCT----TCEEEECC----
T ss_pred -CCCEEEECCCCCccccc--------------------hhHHHHHHHhhcC----CCEEEEEecCCC
Confidence 58999999996421110 1123445555643 479999998654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.2e-07 Score=78.23 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|++++||||+||||.++++.+...|+ +|++++|+.++.+.+. + .+... .+|.++.+..+.+.+... .++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~-~---~g~~~---~~d~~~~~~~~~~~~~~~--~~~ 107 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS-R---LGVEY---VGDSRSVDFADEILELTD--GYG 107 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH-T---TCCSE---EEETTCSTHHHHHHHHTT--TCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-H---cCCCE---EeeCCcHHHHHHHHHHhC--CCC
Confidence 478999999999999999999999996 8999999877655432 2 23322 358877655444443321 236
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|+|+|
T Consensus 108 ~D~vi~~~g 116 (198)
T 1pqw_A 108 VDVVLNSLA 116 (198)
T ss_dssp EEEEEECCC
T ss_pred CeEEEECCc
Confidence 999999987
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.9e-07 Score=85.15 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++|||||+||||.++++.+...|+ +|++++|+.++.+.+ +++ +.. ..+|.++.+++.+.+.++.. ++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~-~~~---g~~---~~~d~~~~~~~~~~~~~~~~--~~ 214 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL-KQI---GFD---AAFNYKTVNSLEEALKKASP--DG 214 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCS---EEEETTSCSCHHHHHHHHCT--TC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-Hhc---CCc---EEEecCCHHHHHHHHHHHhC--CC
Confidence 588999999999999999999999997 999999998776655 444 222 23588774445555554433 57
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|+|+|
T Consensus 215 ~d~vi~~~g 223 (333)
T 1v3u_A 215 YDCYFDNVG 223 (333)
T ss_dssp EEEEEESSC
T ss_pred CeEEEECCC
Confidence 999999998
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-07 Score=86.57 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=59.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++|||++ |+|+++++.|++.| +|++++|+.++++++.+++...+.....+.+|+++. .+.+
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G--~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~----------~~~~ 191 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN--NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL----------DVDL 191 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT----------TCCC
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH----------HHhh
Confidence 5689999999997 99999999999999 899999998888777766532110000122454441 3456
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
+++|+||||+|..
T Consensus 192 ~~~DilVn~ag~~ 204 (287)
T 1nvt_A 192 DGVDIIINATPIG 204 (287)
T ss_dssp TTCCEEEECSCTT
T ss_pred CCCCEEEECCCCC
Confidence 7899999999975
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.8e-06 Score=77.28 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=64.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC---hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.++++|++||+|+ ||+|++++..|++.|+.+|++++|+ .++++++.+++..... +.+...++.+.+++.+.+.
T Consensus 150 ~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~-~~~~~~~~~~~~~l~~~l~-- 225 (315)
T 3tnl_A 150 HDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD-CKAQLFDIEDHEQLRKEIA-- 225 (315)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS-CEEEEEETTCHHHHHHHHH--
T ss_pred CCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC-CceEEeccchHHHHHhhhc--
Confidence 3578999999997 7999999999999998789999999 8888888777653221 2334457777666554443
Q ss_pred HHcCCCccEEEecCcc
Q 015844 159 RRSGRPLDVLVCNAAV 174 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~ 174 (399)
..|+|||+..+
T Consensus 226 -----~aDiIINaTp~ 236 (315)
T 3tnl_A 226 -----ESVIFTNATGV 236 (315)
T ss_dssp -----TCSEEEECSST
T ss_pred -----CCCEEEECccC
Confidence 58999998765
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-06 Score=82.39 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=62.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++++++|+|+ ||+|+++++.|++.|..+|++++|+.++++.+.+. ..+..+.+|++|.+++.++++
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-----~~~~~~~~D~~d~~~l~~~l~------ 87 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-----SGSKAISLDVTDDSALDKVLA------ 87 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-----GTCEEEECCTTCHHHHHHHHH------
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-----cCCcEEEEecCCHHHHHHHHc------
Confidence 566789999997 99999999999998325899999998877766543 135567899999988777664
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
.+|+|||+++..
T Consensus 88 -~~DvVIn~tp~~ 99 (467)
T 2axq_A 88 -DNDVVISLIPYT 99 (467)
T ss_dssp -TSSEEEECSCGG
T ss_pred -CCCEEEECCchh
Confidence 599999999864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.3e-06 Score=78.46 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|++||||+++++.+...|+ +|++++|+.++.+.+ +++ +.. ..+|+++.+++.+.+.++... +
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~-~~~---g~~---~~~d~~~~~~~~~~~~~~~~~--~ 238 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELF-RSI---GGE---VFIDFTKEKDIVGAVLKATDG--G 238 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHH-HHT---TCC---EEEETTTCSCHHHHHHHHHTS--C
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHH-HHc---CCc---eEEecCccHhHHHHHHHHhCC--C
Confidence 588999999999999999999999997 999999987766443 333 332 235887655666666665543 7
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 239 ~D~vi~~~g~ 248 (347)
T 2hcy_A 239 AHGVINVSVS 248 (347)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEECCCc
Confidence 9999999984
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.14 E-value=6.5e-06 Score=75.08 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=58.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++|+|+ ||+|+++++.|++.|+ +|++++|+.++++++.+++...+ .+. .+|+ +++ .+
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~-~~~--~~~~---~~~-------~~-- 178 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTG-SIQ--ALSM---DEL-------EG-- 178 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGS-SEE--ECCS---GGG-------TT--
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccC-Cee--EecH---HHh-------cc--
Confidence 467899999998 7999999999999995 99999999988888877764322 221 2333 211 11
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
+.+|+||||++..
T Consensus 179 ~~~DivVn~t~~~ 191 (271)
T 1nyt_A 179 HEFDLIINATSSG 191 (271)
T ss_dssp CCCSEEEECCSCG
T ss_pred CCCCEEEECCCCC
Confidence 5899999999975
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.9e-06 Score=79.29 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|++||||.++++.+...|+ +|++++|+.++.+.+.+++ |... .+|.++.+++.+.+.++.. ++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~---g~~~---~~d~~~~~~~~~~~~~~~~--~~ 225 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKF---GFDD---AFNYKEESDLTAALKRCFP--NG 225 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTS---CCSE---EEETTSCSCSHHHHHHHCT--TC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCce---EEecCCHHHHHHHHHHHhC--CC
Confidence 588999999999999999999999997 9999999987766554333 3322 2477665444444544432 47
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 226 ~d~vi~~~g~ 235 (345)
T 2j3h_A 226 IDIYFENVGG 235 (345)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCH
Confidence 9999999983
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=6.1e-06 Score=77.35 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++|||||+||||.++++.+...|+ +|++++|++++.+.+.+ + +... .+|.++.+..+.+.+... ..+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~-~---g~~~---~~~~~~~~~~~~~~~~~~--~~~ 209 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK-A---GAWQ---VINYREEDLVERLKEITG--GKK 209 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH-H---TCSE---EEETTTSCHHHHHHHHTT--TCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-c---CCCE---EEECCCccHHHHHHHHhC--CCC
Confidence 588999999999999999999999997 99999999877665543 3 2222 357777655554443321 236
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|+|+|
T Consensus 210 ~D~vi~~~g 218 (327)
T 1qor_A 210 VRVVYDSVG 218 (327)
T ss_dssp EEEEEECSC
T ss_pred ceEEEECCc
Confidence 999999998
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.9e-06 Score=76.79 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++|||||+||||.++++.+...|+ +|++++|+.++.+.+.+ + +.. ..+|.++.+..+.+.+... ..+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~-~---g~~---~~~d~~~~~~~~~i~~~~~--~~~ 214 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK-L---GCH---HTINYSTQDFAEVVREITG--GKG 214 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-H---TCS---EEEETTTSCHHHHHHHHHT--TCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CCC---EEEECCCHHHHHHHHHHhC--CCC
Confidence 578999999999999999999999997 99999999877665533 3 232 2357776555544443321 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 215 ~d~vi~~~g~ 224 (333)
T 1wly_A 215 VDVVYDSIGK 224 (333)
T ss_dssp EEEEEECSCT
T ss_pred CeEEEECCcH
Confidence 9999999984
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6e-06 Score=78.42 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=58.1
Q ss_pred CC--CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RK--GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~--k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+ +++|||||+||||.++++.+...|+.+|++++++.++.+.+.+++ +.. ..+|.++.+..+.+ .++..
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~~---~~~d~~~~~~~~~~-~~~~~-- 228 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GFD---AAINYKKDNVAEQL-RESCP-- 228 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CCS---EEEETTTSCHHHHH-HHHCT--
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CCc---eEEecCchHHHHHH-HHhcC--
Confidence 47 899999999999999999999999558999999987766655434 222 23577764333333 22222
Q ss_pred CCccEEEecCc
Q 015844 163 RPLDVLVCNAA 173 (399)
Q Consensus 163 g~id~lv~nAg 173 (399)
+++|++|+|+|
T Consensus 229 ~~~d~vi~~~G 239 (357)
T 2zb4_A 229 AGVDVYFDNVG 239 (357)
T ss_dssp TCEEEEEESCC
T ss_pred CCCCEEEECCC
Confidence 26999999998
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=64.47 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+++++|+|+ |.+|..+++.|.++| +.|++++++++..+.+.+. .+.++.+|.++++.++++ ....
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~------~~~~ 70 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSKEKIELLEDE------GFDAVIADPTDESFYRSL------DLEG 70 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT------TCEEEECCTTCHHHHHHS------CCTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHC------CCcEEECCCCCHHHHHhC------Cccc
Confidence 3568999998 789999999999999 5999999998776665432 356788999999876654 2346
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
.|++|.+.+
T Consensus 71 ~d~vi~~~~ 79 (141)
T 3llv_A 71 VSAVLITGS 79 (141)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEecC
Confidence 899987665
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=7.1e-06 Score=77.21 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|++||||.++++.+...|+ +|++++|++++.+.+.+++ +... ..|..+.+..+.+.+.. .++
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~~~~---~~~ 218 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEEL---GFDG---AIDYKNEDLAAGLKREC---PKG 218 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT---CCSE---EEETTTSCHHHHHHHHC---TTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCCE---EEECCCHHHHHHHHHhc---CCC
Confidence 588999999999999999999999997 9999999988777664544 3322 24666654444333322 347
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 219 ~d~vi~~~g~ 228 (336)
T 4b7c_A 219 IDVFFDNVGG 228 (336)
T ss_dssp EEEEEESSCH
T ss_pred ceEEEECCCc
Confidence 9999999984
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.4e-06 Score=76.98 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+||||.++++.+...|+ +|++++|++++.+.+ +++ +.. ..+|.++.+.++.+.+.. . .++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~---g~~---~~~~~~~~~~~~~~~~~~-~-~~~ 231 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMA-EKL---GAA---AGFNYKKEDFSEATLKFT-K-GAG 231 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHH---TCS---EEEETTTSCHHHHHHHHT-T-TSC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCc---EEEecCChHHHHHHHHHh-c-CCC
Confidence 588999999999999999999999997 899999998776655 344 222 235777655444443322 1 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 232 ~d~vi~~~G~ 241 (354)
T 2j8z_A 232 VNLILDCIGG 241 (354)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCc
Confidence 9999999984
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.06 E-value=9.8e-06 Score=76.03 Aligned_cols=121 Identities=9% Similarity=-0.035 Sum_probs=78.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC------cEEEEeecC----hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGK------WHIIMACRD----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga------~~vv~~~r~----~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
.+++||||+|.||..++..|+..|. ..|++++++ .++++.....+......+. .|+....+..+.+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~---~~i~~~~~~~~al- 81 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLL---AGMTAHADPMTAF- 81 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTE---EEEEEESSHHHHT-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhccccc---CcEEEecCcHHHh-
Confidence 4799999999999999999999884 279999998 5545544444433211111 2333322333333
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
...|+||+.||..... ..+. ...+..|+.....+.+.+..+- .++++||++|...
T Consensus 82 ------~~aD~Vi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~----~p~a~ii~~SNPv 136 (329)
T 1b8p_A 82 ------KDADVALLVGARPRGP----GMER---KDLLEANAQIFTVQGKAIDAVA----SRNIKVLVVGNPA 136 (329)
T ss_dssp ------TTCSEEEECCCCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHHHS----CTTCEEEECSSSH
T ss_pred ------CCCCEEEEeCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHhc----CCCeEEEEccCch
Confidence 3689999999974321 2233 3467888888888877776652 1246899998754
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=75.84 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++||+|++||||.++++.+...|+ +|++++|++++.+.+ +++ +.. ..+|..+.+..+.+.+.. ...+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~---ga~---~~~d~~~~~~~~~~~~~~--~~~~ 239 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV-LQN---GAH---EVFNHREVNYIDKIKKYV--GEKG 239 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCS---EEEETTSTTHHHHHHHHH--CTTC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHH-HHc---CCC---EEEeCCCchHHHHHHHHc--CCCC
Confidence 588999999999999999999999997 899999998776633 333 332 235777755444443322 1236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 240 ~D~vi~~~G~ 249 (351)
T 1yb5_A 240 IDIIIEMLAN 249 (351)
T ss_dssp EEEEEESCHH
T ss_pred cEEEEECCCh
Confidence 9999999984
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=5.6e-06 Score=67.29 Aligned_cols=78 Identities=9% Similarity=0.129 Sum_probs=56.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++++++|+|+ |++|..+++.|.+.|. .|++++++.+..+. +...+ ...+.+|.++.+.+.++ ..
T Consensus 3 ~~~~~~v~I~G~-G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~----~~~~~--~~~~~~d~~~~~~l~~~------~~ 68 (144)
T 2hmt_A 3 RIKNKQFAVIGL-GRFGGSIVKELHRMGH-EVLAVDINEEKVNA----YASYA--THAVIANATEENELLSL------GI 68 (144)
T ss_dssp ---CCSEEEECC-SHHHHHHHHHHHHTTC-CCEEEESCHHHHHT----TTTTC--SEEEECCTTCHHHHHTT------TG
T ss_pred CCcCCcEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH----HHHhC--CEEEEeCCCCHHHHHhc------CC
Confidence 345678999998 9999999999999995 89999998765443 22222 35677899987655433 12
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
...|++|++++.
T Consensus 69 ~~~d~vi~~~~~ 80 (144)
T 2hmt_A 69 RNFEYVIVAIGA 80 (144)
T ss_dssp GGCSEEEECCCS
T ss_pred CCCCEEEECCCC
Confidence 369999998874
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-05 Score=71.95 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=60.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++|+|+ ||+|++++..|++.|+.+|++++|+.++++++.+.+......+.+...+..+. .+.+.
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l---~~~l~------ 193 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGI---EDVIA------ 193 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTH---HHHHH------
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHH---HHHHh------
Confidence 578999999998 89999999999999987899999999998888877753322223334444333 23332
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
..|+|||+...
T Consensus 194 -~~DiVInaTp~ 204 (283)
T 3jyo_A 194 -AADGVVNATPM 204 (283)
T ss_dssp -HSSEEEECSST
T ss_pred -cCCEEEECCCC
Confidence 48999998765
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-05 Score=76.89 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=58.5
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEE--ecCC---------CHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH--LDLA---------SLDSVR 152 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~--~Dvs---------~~~~v~ 152 (399)
-.|+++||+|++||||.++++.+...|+ +|+++.++.++.+.+ +++ |....+-. .|+. +.++++
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~-~~l---Ga~~~i~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAV-RAL---GCDLVINRAELGITDDIADDPRRVVETGR 293 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCCCEEEHHHHTCCTTGGGCHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-Hhc---CCCEEEecccccccccccccccccchhhh
Confidence 3588999999999999999999999997 888888887776654 333 33322211 1221 123444
Q ss_pred HHHHHHHHcC-CCccEEEecCcc
Q 015844 153 QFVDTFRRSG-RPLDVLVCNAAV 174 (399)
Q Consensus 153 ~~~~~~~~~~-g~id~lv~nAg~ 174 (399)
.+.+.+.+.. +++|++|+|+|.
T Consensus 294 ~~~~~v~~~~g~g~Dvvid~~G~ 316 (447)
T 4a0s_A 294 KLAKLVVEKAGREPDIVFEHTGR 316 (447)
T ss_dssp HHHHHHHHHHSSCCSEEEECSCH
T ss_pred HHHHHHHHHhCCCceEEEECCCc
Confidence 4555555443 469999999984
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=6.1e-05 Score=69.73 Aligned_cols=84 Identities=24% Similarity=0.261 Sum_probs=61.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC---hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
++++|++||+|+ ||.|++++..|++.|+.+|+++.|+ .++++++.+++.... ...+...+..+.+...+.+.
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-~~~v~~~~~~~l~~~~~~l~--- 219 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVVTVTDLADQHAFTEALA--- 219 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHH---
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-CcceEEechHhhhhhHhhcc---
Confidence 578999999997 8999999999999998789999999 778888777764321 12233456666543333332
Q ss_pred HcCCCccEEEecCccc
Q 015844 160 RSGRPLDVLVCNAAVY 175 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~ 175 (399)
..|+|||+....
T Consensus 220 ----~~DiIINaTp~G 231 (312)
T 3t4e_A 220 ----SADILTNGTKVG 231 (312)
T ss_dssp ----HCSEEEECSSTT
T ss_pred ----CceEEEECCcCC
Confidence 489999987653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.2e-05 Score=73.03 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.++++||||++||||..+++.+... |+ +|+++++++++.+.+ +++ +... .+|.++.+..+.+. ++... +
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~~-~~~~~-~ 239 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAA-KRA---GADY---VINASMQDPLAEIR-RITES-K 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHH-HHH---TCSE---EEETTTSCHHHHHH-HHTTT-S
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHH-HHh---CCCE---EecCCCccHHHHHH-HHhcC-C
Confidence 5789999999999999999999999 97 899999998776654 333 2322 24666644333322 22211 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|+|+|.
T Consensus 240 ~~d~vi~~~g~ 250 (347)
T 1jvb_A 240 GVDAVIDLNNS 250 (347)
T ss_dssp CEEEEEESCCC
T ss_pred CceEEEECCCC
Confidence 79999999985
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.5e-05 Score=71.13 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+||||.++++.+...|+ +|+++++++++.+.+.+ + +... .+|..+.+..+.+.+. . .++
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~-l---Ga~~---~~~~~~~~~~~~~~~~-~--~~g 235 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER-L---GAKR---GINYRSEDFAAVIKAE-T--GQG 235 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-H---TCSE---EEETTTSCHHHHHHHH-H--SSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-c---CCCE---EEeCCchHHHHHHHHH-h--CCC
Confidence 578999999999999999999999997 89999999887665443 3 2322 2466655444444332 2 457
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 236 ~Dvvid~~g~ 245 (353)
T 4dup_A 236 VDIILDMIGA 245 (353)
T ss_dssp EEEEEESCCG
T ss_pred ceEEEECCCH
Confidence 9999999984
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-05 Score=72.84 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=53.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++|+++||+|+ ||||..+++.+...|+ +|++++++. ++.+.+ +++ |. ..+ | .+ +-.+.+. + ..
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~-~~~---ga--~~v--~-~~-~~~~~~~-~-~~ 244 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVI-EET---KT--NYY--N-SS-NGYDKLK-D-SV 244 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHH-HHH---TC--EEE--E-CT-TCSHHHH-H-HH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHH-HHh---CC--cee--c-hH-HHHHHHH-H-hC
Confidence 45899999999 9999999999999997 999999987 665433 333 22 222 5 54 2222332 2 22
Q ss_pred cCCCccEEEecCcc
Q 015844 161 SGRPLDVLVCNAAV 174 (399)
Q Consensus 161 ~~g~id~lv~nAg~ 174 (399)
+++|++|+++|.
T Consensus 245 --~~~d~vid~~g~ 256 (366)
T 2cdc_A 245 --GKFDVIIDATGA 256 (366)
T ss_dssp --CCEEEEEECCCC
T ss_pred --CCCCEEEECCCC
Confidence 579999999985
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00024 Score=66.41 Aligned_cols=104 Identities=13% Similarity=-0.018 Sum_probs=67.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCC--cEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.+++||||+|.+|..++..|++.| +..|++++++++ +.....+..... ++.. +++..+..++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~al~------- 75 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEAALT------- 75 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHHHHT-------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHHHcC-------
Confidence 479999999999999999999887 237888888765 222222322111 2222 233444444443
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHH
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD 210 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 210 (399)
..|+||++||..... ..+. ...+..|+.+...+.+.+..+
T Consensus 76 gaDvVi~~ag~~~~~----g~~r---~dl~~~N~~~~~~i~~~i~~~ 115 (326)
T 1smk_A 76 GMDLIIVPAGVPRKP----GMTR---DDLFKINAGIVKTLCEGIAKC 115 (326)
T ss_dssp TCSEEEECCCCCCCS----SCCC---SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcCCCC----CCCH---HHHHHHHHHHHHHHHHHHHhh
Confidence 699999999974221 1122 244778888888888877665
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00022 Score=67.24 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
++++||+||+|+||..+++.+...|+ +|++++++.++.+.+. ++ |... ..|..+.+..+.+.+.... .++
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~-~~---Ga~~---~~~~~~~~~~~~v~~~~~~--~g~ 234 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLK-DI---GAAH---VLNEKAPDFEATLREVMKA--EQP 234 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHH-HH---TCSE---EEETTSTTHHHHHHHHHHH--HCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCCE---EEECCcHHHHHHHHHHhcC--CCC
Confidence 48999999999999999999999998 9999999887766553 33 3322 2455554433333332221 269
Q ss_pred cEEEecCcc
Q 015844 166 DVLVCNAAV 174 (399)
Q Consensus 166 d~lv~nAg~ 174 (399)
|++|+|+|.
T Consensus 235 D~vid~~g~ 243 (349)
T 3pi7_A 235 RIFLDAVTG 243 (349)
T ss_dssp CEEEESSCH
T ss_pred cEEEECCCC
Confidence 999999985
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=69.06 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.++++||+|++||||..+++.+...|+ +|+++++++++.+.+. ++ +... .+|.++.+..+. +.++.. ..+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~-~~---ga~~---~~d~~~~~~~~~-~~~~~~-~~~ 235 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAK-AL---GADE---TVNYTHPDWPKE-VRRLTG-GKG 235 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTSTTHHHH-HHHHTT-TTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-hc---CCCE---EEcCCcccHHHH-HHHHhC-CCC
Confidence 578999999999999999999999997 9999999987766553 33 2322 257776543222 222221 237
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|+|+|
T Consensus 236 ~d~vi~~~g 244 (343)
T 2eih_A 236 ADKVVDHTG 244 (343)
T ss_dssp EEEEEESSC
T ss_pred ceEEEECCC
Confidence 999999998
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=66.55 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=57.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++|+|+ ||+|++++..|++.| .+|++++|+.++++++.+.+...+ .+. .+|+. ++. .
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G-~~v~v~~R~~~~a~~l~~~~~~~~-~~~--~~~~~---~~~--------~- 178 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYG-NIQ--AVSMD---SIP--------L- 178 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGS-CEE--EEEGG---GCC--------C-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHccccC-CeE--EeeHH---Hhc--------c-
Confidence 467899999998 899999999999999 599999999988888887764322 232 23331 110 1
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
+..|+|||+++..
T Consensus 179 ~~~DivIn~t~~~ 191 (272)
T 1p77_A 179 QTYDLVINATSAG 191 (272)
T ss_dssp SCCSEEEECCCC-
T ss_pred CCCCEEEECCCCC
Confidence 4799999999874
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.4e-05 Score=68.56 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=58.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+++++|+|+ ||+|++++..|++.|+.+|++++|+.++++++.+.+......+ . +.+++ .+..
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~----~---~~~~~-------~~~~ 202 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAY----F---SLAEA-------ETRL 202 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCE----E---CHHHH-------HHTG
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCce----e---eHHHH-------Hhhh
Confidence 567899999997 7999999999999997699999999988888887764321111 1 22222 2223
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+|||+.+..
T Consensus 203 ~~aDivIn~t~~~ 215 (297)
T 2egg_A 203 AEYDIIINTTSVG 215 (297)
T ss_dssp GGCSEEEECSCTT
T ss_pred ccCCEEEECCCCC
Confidence 4699999999874
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=8.8e-05 Score=69.58 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+||||.++++.+...|+ +|++++++.++.+.+ +++ |... ..|..+.+..+.+.+.. . ..+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~---ga~~---~~~~~~~~~~~~~~~~~-~-~~g 217 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIA-KEY---GAEY---LINASKEDILRQVLKFT-N-GKG 217 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCSE---EEETTTSCHHHHHHHHT-T-TSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHc---CCcE---EEeCCCchHHHHHHHHh-C-CCC
Confidence 588999999999999999999999997 999999988776643 333 3322 24555544333333221 1 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 218 ~D~vid~~g~ 227 (334)
T 3qwb_A 218 VDASFDSVGK 227 (334)
T ss_dssp EEEEEECCGG
T ss_pred ceEEEECCCh
Confidence 9999999984
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00019 Score=67.40 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|+ ||||..+++.+...|+ +|+.+++++++.+.+. ++ +... .+|.++.+-.+. +.++. ++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~---~~d~~~~~~~~~-~~~~~---~~ 230 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAK-EL---GADL---VVNPLKEDAAKF-MKEKV---GG 230 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH-HT---TCSE---EECTTTSCHHHH-HHHHH---SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-HC---CCCE---EecCCCccHHHH-HHHHh---CC
Confidence 5789999999 8899999999999997 9999999987766543 33 3322 257765432222 33322 47
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+++|.
T Consensus 231 ~d~vid~~g~ 240 (339)
T 1rjw_A 231 VHAAVVTAVS 240 (339)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=68.56 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+|+||.++++.+...|+ +|+++++++++.+.+. ++ |... ..|.++.+..+.+.+.. ...+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~~---Ga~~---~~~~~~~~~~~~~~~~~--~~~g 209 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAK-AL---GAWE---TIDYSHEDVAKRVLELT--DGKK 209 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTTSCHHHHHHHHT--TTCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCCE---EEeCCCccHHHHHHHHh--CCCC
Confidence 588999999999999999999999997 9999999987766543 33 2222 24665544433333322 1236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 210 ~Dvvid~~g~ 219 (325)
T 3jyn_A 210 CPVVYDGVGQ 219 (325)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCh
Confidence 9999999984
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00022 Score=67.78 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|+ |+||..+++.+...|+ +|++++++.++.+.+.+++ |... ..|..+.+.+.+ ..+.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~l---Ga~~---v~~~~~~~~~~~-------~~~~ 251 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNF---GADS---FLVSRDQEQMQA-------AAGT 251 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTS---CCSE---EEETTCHHHHHH-------TTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---CCce---EEeccCHHHHHH-------hhCC
Confidence 6889999996 9999999999999997 8999999887766655444 3322 246666543322 2347
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+++|.
T Consensus 252 ~D~vid~~g~ 261 (366)
T 1yqd_A 252 LDGIIDTVSA 261 (366)
T ss_dssp EEEEEECCSS
T ss_pred CCEEEECCCc
Confidence 9999999985
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0004 Score=57.11 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..+.++|.|+ |.+|..+++.|.+.| ..|++++++ .+..+.+.+... ..+.++.+|.++++.++++ ...
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a------~i~ 70 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKA------GID 70 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHH------TTT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhhc---CCCeEEEcCCCCHHHHHHc------Chh
Confidence 3457889986 999999999999999 589999997 454444443322 2467889999998876543 123
Q ss_pred CccEEEecCc
Q 015844 164 PLDVLVCNAA 173 (399)
Q Consensus 164 ~id~lv~nAg 173 (399)
..|.+|.+.+
T Consensus 71 ~ad~vi~~~~ 80 (153)
T 1id1_A 71 RCRAILALSD 80 (153)
T ss_dssp TCSEEEECSS
T ss_pred hCCEEEEecC
Confidence 6888887654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00024 Score=64.45 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=57.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++|+|+ ||+|++++..|++.|+.+|++++|+.++++++.+++.. ..+..+ ++.+.. .
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~--~~~~~~--~~~~l~----------~-- 179 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH--SRLRIS--RYEALE----------G-- 179 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC--TTEEEE--CSGGGT----------T--
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc--CCeeEe--eHHHhc----------c--
Confidence 578999999997 79999999999999976999999999999988888754 233333 222211 1
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
...|+|||+...
T Consensus 180 ~~~DivInaTp~ 191 (272)
T 3pwz_A 180 QSFDIVVNATSA 191 (272)
T ss_dssp CCCSEEEECSSG
T ss_pred cCCCEEEECCCC
Confidence 368999998755
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00034 Score=63.84 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=58.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++|+++|+|+ ||+|++++..|++.|+.+|++++|+.++.+++.+.+...+ .+.... +.+ + .
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~-~~~~~~--~~~---l----------~ 185 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG-EVKAQA--FEQ---L----------K 185 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS-CEEEEE--GGG---C----------C
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC-CeeEee--HHH---h----------c
Confidence 578999999997 7999999999999996699999999999888888775432 343332 211 1 0
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+|||+....
T Consensus 186 ~~aDiIInaTp~g 198 (281)
T 3o8q_A 186 QSYDVIINSTSAS 198 (281)
T ss_dssp SCEEEEEECSCCC
T ss_pred CCCCEEEEcCcCC
Confidence 3699999987653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=68.29 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|++++||..+++.+...|+ +|++++++.++.+.+.+ + +... ..|..+.+..+.+.+.. ...+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~-l---ga~~---~~~~~~~~~~~~~~~~~--~~~g 213 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR-L---GAAY---VIDTSTAPLYETVMELT--NGIG 213 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH-H---TCSE---EEETTTSCHHHHHHHHT--TTSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-C---CCcE---EEeCCcccHHHHHHHHh--CCCC
Confidence 588999999999999999999989997 99999998877665443 3 3332 24655544333333221 1236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 214 ~Dvvid~~g~ 223 (340)
T 3gms_A 214 ADAAIDSIGG 223 (340)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCC
Confidence 9999999985
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00067 Score=54.41 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=55.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++++|+|+ |.+|..+++.|.+.| ..|++++|+++..+...+.. .+.++..|.++.+.+.+. .....|
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~------~~~~~d 71 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDA------GIEDAD 71 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHT------TTTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhc-----CcEEEEcCCCCHHHHHHc------CcccCC
Confidence 47899987 999999999999999 59999999987766554332 245677899887664321 134689
Q ss_pred EEEecCc
Q 015844 167 VLVCNAA 173 (399)
Q Consensus 167 ~lv~nAg 173 (399)
++|.+.+
T Consensus 72 ~vi~~~~ 78 (140)
T 1lss_A 72 MYIAVTG 78 (140)
T ss_dssp EEEECCS
T ss_pred EEEEeeC
Confidence 9999864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00033 Score=65.95 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|++||||.++++.+...|+ +|++++++.++.+.+.+ + +... + .|.. +++.+.+.++.. ..+
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~-~---ga~~-v--~~~~--~~~~~~v~~~~~-~~g 227 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS-V---GADI-V--LPLE--EGWAKAVREATG-GAG 227 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH-H---TCSE-E--EESS--TTHHHHHHHHTT-TSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-c---CCcE-E--ecCc--hhHHHHHHHHhC-CCC
Confidence 588999999999999999999999997 99999998877654433 3 2322 2 2443 222222222211 126
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+|+|.
T Consensus 228 ~Dvvid~~g~ 237 (342)
T 4eye_A 228 VDMVVDPIGG 237 (342)
T ss_dssp EEEEEESCC-
T ss_pred ceEEEECCch
Confidence 9999999984
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00046 Score=65.46 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=56.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+++++++|+|+ ||+|+++++.+...|+ +|++++|+.++++.+.+... ..+. ++..+.+++.+.+.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~---~~~~---~~~~~~~~~~~~~~------- 229 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG---SRVE---LLYSNSAEIETAVA------- 229 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGSE---EEECCHHHHHHHHH-------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhC---ceeE---eeeCCHHHHHHHHc-------
Confidence 56789999999 9999999999999998 99999999888777655432 1221 22234444443332
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
..|++|++++..
T Consensus 230 ~~DvVI~~~~~~ 241 (361)
T 1pjc_A 230 EADLLIGAVLVP 241 (361)
T ss_dssp TCSEEEECCCCT
T ss_pred CCCEEEECCCcC
Confidence 699999999863
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00046 Score=64.08 Aligned_cols=116 Identities=18% Similarity=0.106 Sum_probs=71.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeec--ChHHHHHHHHHhc----cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACR--DFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r--~~~~~~~~~~~~~----~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++||||+|.+|..++..|+..|. ..++++++ +.++++.....+. ..+..+.+...| +++.+.
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~a------ 71 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRI------ 71 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGG------
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHH------
Confidence 589999999999999999998873 35888888 6544433222221 111222222211 011111
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
+...|+|||.||..... ..+. ...+..|+.+...+.+.+..+- + +.|+++|..
T Consensus 72 -l~gaD~Vi~~Ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~-~-----~~vlv~SNP 124 (313)
T 1hye_A 72 -IDESDVVIITSGVPRKE----GMSR---MDLAKTNAKIVGKYAKKIAEIC-D-----TKIFVITNP 124 (313)
T ss_dssp -GTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHHHC-C-----CEEEECSSS
T ss_pred -hCCCCEEEECCCCCCCC----CCcH---HHHHHHHHHHHHHHHHHHHHhC-C-----eEEEEecCc
Confidence 23699999999974221 1222 3458899999888888887654 2 355555543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00033 Score=66.47 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+|+||..+++.+...|+ +|+++++++++.+.+.+ + |... ..|..+.+ +.+.+.+.. .++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~-~---Ga~~---~~~~~~~~-~~~~~~~~~--~~g 231 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS-L---GCDR---PINYKTEP-VGTVLKQEY--PEG 231 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TCSE---EEETTTSC-HHHHHHHHC--TTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH-c---CCcE---EEecCChh-HHHHHHHhc--CCC
Confidence 578999999999999999999999997 89999999776655433 3 3332 23554432 223333221 246
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|+|+|
T Consensus 232 ~D~vid~~g 240 (362)
T 2c0c_A 232 VDVVYESVG 240 (362)
T ss_dssp EEEEEECSC
T ss_pred CCEEEECCC
Confidence 999999988
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00037 Score=68.28 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=60.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEE--ec--------CCCHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH--LD--------LASLDSVRQ 153 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~--~D--------vs~~~~v~~ 153 (399)
-.|.++||+|++|+||...++.+...|+ +|+++.+++++.+.+ +++ |....+-. .| ..+.+++++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~-~~l---Ga~~vi~~~~~d~~~~~~~~~~~~~~~~~ 301 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEIC-RAM---GAEAIIDRNAEGYRFWKDENTQDPKEWKR 301 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHH---TCCEEEETTTTTCCSEEETTEECHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHH-Hhh---CCcEEEecCcCcccccccccccchHHHHH
Confidence 3588999999999999999999989997 888888887776654 334 22221110 11 245566666
Q ss_pred HHHHHHHcC--CCccEEEecCcc
Q 015844 154 FVDTFRRSG--RPLDVLVCNAAV 174 (399)
Q Consensus 154 ~~~~~~~~~--g~id~lv~nAg~ 174 (399)
+.+.+.+.. .++|++|.++|.
T Consensus 302 ~~~~i~~~t~g~g~Dvvid~~G~ 324 (456)
T 3krt_A 302 FGKRIRELTGGEDIDIVFEHPGR 324 (456)
T ss_dssp HHHHHHHHHTSCCEEEEEECSCH
T ss_pred HHHHHHHHhCCCCCcEEEEcCCc
Confidence 667666643 379999999884
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00058 Score=65.14 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=59.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+++++|+|+ |+||+.+++.+...|+ +|++++|+.++++.+.+.+ +..+ .+|..+.+++.+++.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g~~~---~~~~~~~~~l~~~l~------ 230 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---CGRI---HTRYSSAYELEGAVK------ 230 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TTSS---EEEECCHHHHHHHHH------
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---CCee---EeccCCHHHHHHHHc------
Confidence 478999999998 9999999999999997 9999999988776655444 2222 234455665555443
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
..|+||++++..
T Consensus 231 -~aDvVi~~~~~p 242 (377)
T 2vhw_A 231 -RADLVIGAVLVP 242 (377)
T ss_dssp -HCSEEEECCCCT
T ss_pred -CCCEEEECCCcC
Confidence 589999998863
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00099 Score=62.68 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+|+||...++.+...|+ +|++++++.++.+.+.+ + |... ..|..+ ++.+.+.++ ..+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~-l---Ga~~---vi~~~~--~~~~~~~~~--~~~g 217 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK-M---GADI---VLNHKE--SLLNQFKTQ--GIEL 217 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH-H---TCSE---EECTTS--CHHHHHHHH--TCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-c---CCcE---EEECCc--cHHHHHHHh--CCCC
Confidence 688999999999999999999999997 99999998877665443 3 3322 134433 222333333 2347
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+++|.
T Consensus 218 ~Dvv~d~~g~ 227 (346)
T 3fbg_A 218 VDYVFCTFNT 227 (346)
T ss_dssp EEEEEESSCH
T ss_pred ccEEEECCCc
Confidence 9999999884
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0005 Score=61.63 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=60.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-------------------HHHHHHHHHhccC--CCcEEEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KENYTIM 141 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-------------------~~~~~~~~~~~~~--~~~~~~~ 141 (399)
.+.+++|+|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+... ..++..+
T Consensus 28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 567789999986 79999999999999977999999986 6777777766543 3355666
Q ss_pred EecCCCHHHHHHHHHHHHHcCCCccEEEecCc
Q 015844 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 142 ~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg 173 (399)
..++++ +.+.+++. ..|+||.+..
T Consensus 107 ~~~~~~-~~~~~~~~-------~~DvVi~~~d 130 (249)
T 1jw9_B 107 NALLDD-AELAALIA-------EHDLVLDCTD 130 (249)
T ss_dssp CSCCCH-HHHHHHHH-------TSSEEEECCS
T ss_pred eccCCH-hHHHHHHh-------CCCEEEEeCC
Confidence 666653 34444433 5899998753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00094 Score=62.87 Aligned_cols=104 Identities=22% Similarity=0.281 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|+ |+||..+++.+...|+.+|+++++++++.+.+. ++ |... ..|..+.+-.+. +.++.. ...
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~---Ga~~---~~~~~~~~~~~~-v~~~~~-g~g 236 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV---GADY---VINPFEEDVVKE-VMDITD-GNG 236 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH---TCSE---EECTTTSCHHHH-HHHHTT-TSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---CCCE---EECCCCcCHHHH-HHHHcC-CCC
Confidence 7889999999 999999999998899658999999877665443 33 2221 245554332222 222211 126
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+|++|+++|.. ..++.+++.++. +|++|.+++..
T Consensus 237 ~D~vid~~g~~--------------------------~~~~~~~~~l~~----~G~iv~~g~~~ 270 (348)
T 2d8a_A 237 VDVFLEFSGAP--------------------------KALEQGLQAVTP----AGRVSLLGLYP 270 (348)
T ss_dssp EEEEEECSCCH--------------------------HHHHHHHHHEEE----EEEEEECCCCS
T ss_pred CCEEEECCCCH--------------------------HHHHHHHHHHhc----CCEEEEEccCC
Confidence 99999999841 023445555654 47999987643
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00067 Score=64.42 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=57.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+|+|.|+ |++|+.+++.|++. ..|.+.+++..+++.+. ..+..+.+|++|.+++.++++ ..|+
T Consensus 18 kilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~~~~~~-------~~~~~~~~d~~d~~~l~~~~~-------~~Dv 80 (365)
T 3abi_A 18 KVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNENLEKVK-------EFATPLKVDASNFDKLVEVMK-------EFEL 80 (365)
T ss_dssp EEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHHHHHHT-------TTSEEEECCTTCHHHHHHHHT-------TCSE
T ss_pred EEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHHHHHHh-------ccCCcEEEecCCHHHHHHHHh-------CCCE
Confidence 5889998 99999999999764 48999999987766543 234567899999998888765 5899
Q ss_pred EEecCccc
Q 015844 168 LVCNAAVY 175 (399)
Q Consensus 168 lv~nAg~~ 175 (399)
||++++..
T Consensus 81 Vi~~~p~~ 88 (365)
T 3abi_A 81 VIGALPGF 88 (365)
T ss_dssp EEECCCGG
T ss_pred EEEecCCc
Confidence 99998754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00076 Score=63.41 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+|+||..+++.+...|+ +|+++ ++.++.+.+ +++ |... +| .+.+ +.+.+.+... ..+
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~-~~l---Ga~~----i~-~~~~-~~~~~~~~~~-~~g 216 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYV-RDL---GATP----ID-ASRE-PEDYAAEHTA-GQG 216 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHH-HHH---TSEE----EE-TTSC-HHHHHHHHHT-TSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHH-HHc---CCCE----ec-cCCC-HHHHHHHHhc-CCC
Confidence 588999999999999999999999997 88888 776665543 333 3332 34 3332 2233333222 236
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|+++|
T Consensus 217 ~D~vid~~g 225 (343)
T 3gaz_A 217 FDLVYDTLG 225 (343)
T ss_dssp EEEEEESSC
T ss_pred ceEEEECCC
Confidence 999999988
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0012 Score=60.91 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=68.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeec--ChHHHHHHHHHhcc---CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACR--DFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r--~~~~~~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++||||+|.+|..++..|+..|. ..++++++ +.++++.....+.. ....+.+.. | +.+ .
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~----a------- 67 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYE----D------- 67 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGG----G-------
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHH----H-------
Confidence 689999999999999999998773 35888888 76554433333321 122333322 2 211 1
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
+...|+||+.||..... ..+. ...+..|+.+...+.+.+..+ . +++.|+++|.
T Consensus 68 ~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~----~-p~~~viv~SN 120 (303)
T 1o6z_A 68 TAGSDVVVITAGIPRQP----GQTR---IDLAGDNAPIMEDIQSSLDEH----N-DDYISLTTSN 120 (303)
T ss_dssp GTTCSEEEECCCCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHTT----C-SCCEEEECCS
T ss_pred hCCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHH----C-CCcEEEEeCC
Confidence 23699999999974221 1233 345778888777777665543 2 2345555433
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00065 Score=62.61 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|++++|+|++|++|..+++.+...|+ +|+.+++++++.+.+. ++ |... ..|..+ .+.. +.+ +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~~---ga~~---~~~~~~~~~~~----~~~----~ 188 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL-AL---GAEE---AATYAEVPERA----KAW----G 188 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH-HT---TCSE---EEEGGGHHHHH----HHT----T
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-hc---CCCE---EEECCcchhHH----HHh----c
Confidence 588999999999999999999999997 9999999887765543 33 3322 245554 3322 222 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|+ +|.
T Consensus 189 ~~d~vid-~g~ 198 (302)
T 1iz0_A 189 GLDLVLE-VRG 198 (302)
T ss_dssp SEEEEEE-CSC
T ss_pred CceEEEE-CCH
Confidence 7999999 874
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=65.55 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=59.0
Q ss_pred ccCCCE-EEEEcCCC-----------------h-HHHHHHHHHHHcCCcEEEEeecChHH--------HHHHHHHhcc--
Q 015844 83 TLRKGS-VIITGASS-----------------G-LGLATAKALAETGKWHIIMACRDFLK--------AERAAKSAGM-- 133 (399)
Q Consensus 83 ~l~~k~-~lVTG~s~-----------------g-IG~aia~~l~~~Ga~~vv~~~r~~~~--------~~~~~~~~~~-- 133 (399)
.+.||+ +|||+|.. | .|.++|+.++++|| .|+++.+...- .....+.+..
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga-~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~ 111 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGY-GVLFLYRARSAFPYAHRFPPQTWLSALRPSG 111 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTC-EEEEEEETTSCCTTGGGSCHHHHHHHCEECC
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCC-EEEEEecCCCcCcchhccCccchhhhhcccc
Confidence 356666 77876643 5 99999999999997 88888874321 0011121111
Q ss_pred -CCCcEEEEEecCCCHHHHHHHHHHH------------------------------HHcCCCccEEEecCcccC
Q 015844 134 -AKENYTIMHLDLASLDSVRQFVDTF------------------------------RRSGRPLDVLVCNAAVYL 176 (399)
Q Consensus 134 -~~~~~~~~~~Dvs~~~~v~~~~~~~------------------------------~~~~g~id~lv~nAg~~~ 176 (399)
....+..+.+|+...+++.+++... .+.++..|++|.+|++..
T Consensus 112 ~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsD 185 (313)
T 1p9o_A 112 PALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSD 185 (313)
T ss_dssp C-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCS
T ss_pred ccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhh
Confidence 1123445667777766666665443 244578999999999963
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00083 Score=63.13 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |++|..+++.+...|+.+|+.+++++++.+.+.+ + .. ...|..+.+ +.+.+.++. .++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l----a~---~v~~~~~~~-~~~~~~~~~--~~g 231 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y----AD---RLVNPLEED-LLEVVRRVT--GSG 231 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T----CS---EEECTTTSC-HHHHHHHHH--SSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h----HH---hccCcCccC-HHHHHHHhc--CCC
Confidence 7889999999 9999999998888996589999998766543321 1 11 124555432 333333333 346
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+++|.
T Consensus 232 ~D~vid~~g~ 241 (343)
T 2dq4_A 232 VEVLLEFSGN 241 (343)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00054 Score=56.47 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=54.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
...+++++|.|+ |.+|..+++.|.+.|. .|++++|+++..+.+.. .. ...++..|.++.+.+.+. ..
T Consensus 16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~--g~~~~~~d~~~~~~l~~~------~~ 82 (155)
T 2g1u_A 16 KQKSKYIVIFGC-GRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EF--SGFTVVGDAAEFETLKEC------GM 82 (155)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TC--CSEEEESCTTSHHHHHTT------TG
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cC--CCcEEEecCCCHHHHHHc------Cc
Confidence 345678999986 9999999999999995 99999999766443210 22 234567888886544321 12
Q ss_pred CCccEEEecCc
Q 015844 163 RPLDVLVCNAA 173 (399)
Q Consensus 163 g~id~lv~nAg 173 (399)
...|++|.+.+
T Consensus 83 ~~ad~Vi~~~~ 93 (155)
T 2g1u_A 83 EKADMVFAFTN 93 (155)
T ss_dssp GGCSEEEECSS
T ss_pred ccCCEEEEEeC
Confidence 35899998865
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0025 Score=60.30 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |++|...++.+...|+..|+++++++++.+.+.+ + ...+..+..|-.+.+++.+.+.++.. ..+
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-l---~~~~~~~~~~~~~~~~~~~~v~~~t~-g~g 252 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE-I---CPEVVTHKVERLSAEESAKKIVESFG-GIE 252 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-H---CTTCEEEECCSCCHHHHHHHHHHHTS-SCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---chhcccccccccchHHHHHHHHHHhC-CCC
Confidence 5789999998 9999999998888998559999999877665443 3 23444555565555555444443321 236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 253 ~Dvvid~~g~ 262 (363)
T 3m6i_A 253 PAVALECTGV 262 (363)
T ss_dssp CSEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0022 Score=58.55 Aligned_cols=89 Identities=20% Similarity=0.399 Sum_probs=64.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh------------------HHHHHHHHHhccC--CCcEEEEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF------------------LKAERAAKSAGMA--KENYTIMH 142 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~ 142 (399)
.+.+++|+|.|+ ||+|.++++.|+..|..++.+++.+. .+.+.+.+.+... ..++..+.
T Consensus 33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~ 111 (292)
T 3h8v_A 33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN 111 (292)
T ss_dssp GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence 577889999986 79999999999999988999999875 4555555555433 34667777
Q ss_pred ecCCCHHHHHHHHHHHHHc----CCCccEEEecC
Q 015844 143 LDLASLDSVRQFVDTFRRS----GRPLDVLVCNA 172 (399)
Q Consensus 143 ~Dvs~~~~v~~~~~~~~~~----~g~id~lv~nA 172 (399)
.++++.+.++.+++.+... ....|+||.+.
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~ 145 (292)
T 3h8v_A 112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV 145 (292)
T ss_dssp CCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred ccCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence 7888777777776654321 13688888654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.001 Score=56.35 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=56.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+.++.++|.| .|.+|..+++.|.+. | ..|++++++++..+.+.+ .+ +.++.+|.++.+.+.++ ..
T Consensus 36 ~~~~~~v~IiG-~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~----~g--~~~~~gd~~~~~~l~~~-----~~ 102 (183)
T 3c85_A 36 NPGHAQVLILG-MGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRS----EG--RNVISGDATDPDFWERI-----LD 102 (183)
T ss_dssp CCTTCSEEEEC-CSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHH----TT--CCEEECCTTCHHHHHTB-----CS
T ss_pred CCCCCcEEEEC-CCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHH----CC--CCEEEcCCCCHHHHHhc-----cC
Confidence 34566788888 599999999999999 9 599999999877665432 22 44567899987654432 01
Q ss_pred CCCccEEEecCc
Q 015844 162 GRPLDVLVCNAA 173 (399)
Q Consensus 162 ~g~id~lv~nAg 173 (399)
....|.+|.+.+
T Consensus 103 ~~~ad~vi~~~~ 114 (183)
T 3c85_A 103 TGHVKLVLLAMP 114 (183)
T ss_dssp CCCCCEEEECCS
T ss_pred CCCCCEEEEeCC
Confidence 346899988654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0066 Score=57.07 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHH-cC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRR-SG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~-~~ 162 (399)
.|+++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++ |... + .|..+ .+..+++.+.... ..
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~-~--~~~~~~~~~~~~i~~~~~~~~g 238 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAK-NC---GADV-T--LVVDPAKEEESSIIERIRSAIG 238 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH-HT---TCSE-E--EECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH-Hh---CCCE-E--EcCcccccHHHHHHHHhccccC
Confidence 5789999997 8999999998888997 6999999877765443 33 3332 2 34443 2222333222210 12
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
+++|++|+++|.
T Consensus 239 ~g~D~vid~~g~ 250 (352)
T 1e3j_A 239 DLPNVTIDCSGN 250 (352)
T ss_dssp SCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 469999999984
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=57.10 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=52.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++++|.|+ |++|..+++.|.+.|+ .|++++|+.++.+.+.+++. . .. .+..+. .++++ ..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~---~--~~--~~~~~~---~~~~~-------~~ 81 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYE---Y--EY--VLINDI---DSLIK-------NN 81 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHT---C--EE--EECSCH---HHHHH-------TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhC---C--ce--EeecCH---HHHhc-------CC
Confidence 779999996 9999999999999996 69999999988887776653 1 11 123333 22332 58
Q ss_pred cEEEecCccc
Q 015844 166 DVLVCNAAVY 175 (399)
Q Consensus 166 d~lv~nAg~~ 175 (399)
|+||++.+..
T Consensus 82 Divi~at~~~ 91 (144)
T 3oj0_A 82 DVIITATSSK 91 (144)
T ss_dssp SEEEECSCCS
T ss_pred CEEEEeCCCC
Confidence 9999988753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0036 Score=50.48 Aligned_cols=73 Identities=7% Similarity=0.056 Sum_probs=55.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+.++|.|+ |.+|..+++.|.+.| +.|++++++++..+.+.+ ..+.++.+|.++++.++++ .....|
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~------~g~~~i~gd~~~~~~l~~a------~i~~ad 73 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASD-IPLVVIETSRTRVDELRE------RGVRAVLGNAANEEIMQLA------HLECAK 73 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH------TTCEEEESCTTSHHHHHHT------TGGGCS
T ss_pred CCEEEECc-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH------cCCCEEECCCCCHHHHHhc------CcccCC
Confidence 35777786 889999999999999 599999999887766543 1356788999999876543 112578
Q ss_pred EEEecCc
Q 015844 167 VLVCNAA 173 (399)
Q Consensus 167 ~lv~nAg 173 (399)
.+|.+.+
T Consensus 74 ~vi~~~~ 80 (140)
T 3fwz_A 74 WLILTIP 80 (140)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 8877654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0019 Score=61.37 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+||+|+||..+++.+...|+ +|+.+++ .++.+.+ +++ |... .+|..+.+.. +++.+ .++
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~-~~~~~~~-~~l---Ga~~---v~~~~~~~~~----~~~~~-~~g 248 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCS-QDASELV-RKL---GADD---VIDYKSGSVE----EQLKS-LKP 248 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC-GGGHHHH-HHT---TCSE---EEETTSSCHH----HHHHT-SCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeC-hHHHHHH-HHc---CCCE---EEECCchHHH----HHHhh-cCC
Confidence 578999999999999999999988997 8888874 4444433 443 3332 2355553322 22332 257
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|+++|.
T Consensus 249 ~D~vid~~g~ 258 (375)
T 2vn8_A 249 FDFILDNVGG 258 (375)
T ss_dssp BSEEEESSCT
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0022 Score=61.75 Aligned_cols=74 Identities=24% Similarity=0.428 Sum_probs=55.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.|++++|.|+ |+||..+++.|...|+.+|++++|+.++.++..+.+. .. . .+.. ++.+.+
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g---~~--~--~~~~---~l~~~l------- 225 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG---GE--A--VRFD---ELVDHL------- 225 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT---CE--E--CCGG---GHHHHH-------
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC---Cc--e--ecHH---hHHHHh-------
Confidence 368999999998 9999999999999996689999999888766666552 22 1 2322 233333
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
...|+||++.+.
T Consensus 226 ~~aDvVi~at~~ 237 (404)
T 1gpj_A 226 ARSDVVVSATAA 237 (404)
T ss_dssp HTCSEEEECCSS
T ss_pred cCCCEEEEccCC
Confidence 268999999764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0029 Score=55.22 Aligned_cols=73 Identities=23% Similarity=0.238 Sum_probs=56.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.++|.|+ |.+|..+++.|.+.| ..|++++++++..+.+.+.. .+.++.+|.++++.++++ .....|+
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~~-----~~~~i~gd~~~~~~l~~a------~i~~ad~ 68 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDA------EVSKNDV 68 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHH------TCCTTCE
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHc-----CCeEEEcCCCCHHHHHhc------CcccCCE
Confidence 4889996 899999999999999 59999999988777655432 356789999998876643 1246888
Q ss_pred EEecCc
Q 015844 168 LVCNAA 173 (399)
Q Consensus 168 lv~nAg 173 (399)
+|.+.+
T Consensus 69 vi~~~~ 74 (218)
T 3l4b_C 69 VVILTP 74 (218)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 886543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0043 Score=58.68 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+| +|+||...++.+...|+ +|+++++++++.+.+ +++ |... + .| .+.+++.+.+.++.. ..+
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~l---Ga~~-v--i~-~~~~~~~~~v~~~~~-g~g 257 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGA-EVIVTSSSREKLDRA-FAL---GADH-G--IN-RLEEDWVERVYALTG-DRG 257 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHH---TCSE-E--EE-TTTSCHHHHHHHHHT-TCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCC-EEEEEecCchhHHHH-HHc---CCCE-E--Ec-CCcccHHHHHHHHhC-CCC
Confidence 578999999 89999999999989997 999999998776654 334 3322 2 34 333333333333322 236
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|++|.++|
T Consensus 258 ~D~vid~~g 266 (363)
T 3uog_A 258 ADHILEIAG 266 (363)
T ss_dssp EEEEEEETT
T ss_pred ceEEEECCC
Confidence 999999998
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0025 Score=59.66 Aligned_cols=119 Identities=17% Similarity=0.095 Sum_probs=70.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.|.++++.|+|++|.+|..+|..++..|. ..|++++.+.++++.....+... ..++.+ . +|. .+.+
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d~---~~al--- 74 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SDI---KEAL--- 74 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SCH---HHHH---
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CCH---HHHh---
Confidence 46678899999999999999999999883 48999999987766544444321 112221 1 122 1222
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCce-EEEEecc
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKR-LIIVGSI 227 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~-iV~vSS~ 227 (399)
...|++|.+||.... + ..+. ...+..|..-...+.+.+ .+.. +++. |+++|-.
T Consensus 75 ----~dADvVvitaG~p~k--p--G~~R---~dLl~~N~~I~~~i~~~i----~~~~-p~a~~vlvvsNP 128 (343)
T 3fi9_A 75 ----TDAKYIVSSGGAPRK--E--GMTR---EDLLKGNAEIAAQLGKDI----KSYC-PDCKHVIIIFNP 128 (343)
T ss_dssp ----TTEEEEEECCC-----------CH---HHHHHHHHHHHHHHHHHH----HHHC-TTCCEEEECSSS
T ss_pred ----CCCCEEEEccCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHH----HHhc-cCcEEEEEecCc
Confidence 269999999997422 1 2232 344666765555454444 4433 2464 6676543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0017 Score=61.42 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=50.4
Q ss_pred CC-CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHH---HHHHHHhccCCCcEEEEEecCCCH--HHHHHHHHHH
Q 015844 85 RK-GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA---ERAAKSAGMAKENYTIMHLDLASL--DSVRQFVDTF 158 (399)
Q Consensus 85 ~~-k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~---~~~~~~~~~~~~~~~~~~~Dvs~~--~~v~~~~~~~ 158 (399)
.| .++||+||+|++|...++.+...|+ +|+.++++.++. .+..+++ |... ++ |..+. +++.+.+.++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~l---Ga~~-vi--~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKEL---GATQ-VI--TEDQNNSREFGPTIKEW 238 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHH---TCSE-EE--EHHHHHCGGGHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhc---CCeE-EE--ecCccchHHHHHHHHHH
Confidence 57 8999999999999999988888897 788877665431 2223343 3332 22 22210 1222222222
Q ss_pred HH-cCCCccEEEecCcc
Q 015844 159 RR-SGRPLDVLVCNAAV 174 (399)
Q Consensus 159 ~~-~~g~id~lv~nAg~ 174 (399)
.. ..+++|++|.++|.
T Consensus 239 t~~~~~g~Dvvid~~G~ 255 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVGG 255 (364)
T ss_dssp HHHHTCCEEEEEESSCH
T ss_pred hhccCCCceEEEECCCc
Confidence 20 13479999999884
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0065 Score=57.83 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC--CHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA--SLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs--~~~~v~~~~~~~~~~~ 162 (399)
.|.++||+| +|++|...++.+...|+.+|+.+++++++.+.+. ++ |... + .|.. +.+++.+.+.++.. .
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga~~-v--i~~~~~~~~~~~~~v~~~~~-g 265 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI---GADL-T--LNRRETSVEERRKAIMDITH-G 265 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT---TCSE-E--EETTTSCHHHHHHHHHHHTT-T
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc---CCcE-E--EeccccCcchHHHHHHHHhC-C
Confidence 478999999 8999999999888899549999999987765543 33 3322 2 3443 23343333333221 1
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
.++|++|+++|.
T Consensus 266 ~g~Dvvid~~g~ 277 (380)
T 1vj0_A 266 RGADFILEATGD 277 (380)
T ss_dssp SCEEEEEECSSC
T ss_pred CCCcEEEECCCC
Confidence 269999999984
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00046 Score=62.75 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=38.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
++++|+++|+|+ ||.|++++..|++.|+.+|++++|+.++.+++
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l 157 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW 157 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 567899999997 79999999999999976899999998765543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0073 Score=55.92 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=70.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCCC--cEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++.|+||+|.+|..++..|+..| +..|+++++++ .+.....+..... ++.... ...+.+++++ .
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~-------~ 68 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYL----GPEQLPDCLK-------G 68 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHT-------T
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEec----CCCCHHHHhC-------C
Confidence 58899999999999999999887 24899999987 2333334433211 222211 0112232232 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~ 229 (399)
.|++|+.+|..... ..+.. ..+..|+.....+.+.+.++. +++.||++|-...
T Consensus 69 aDvVvi~ag~~~~~----g~~r~---dl~~~n~~i~~~i~~~i~~~~-----p~a~viv~sNPv~ 121 (314)
T 1mld_A 69 CDVVVIPAGVPRKP----GMTRD---DLFNTNATIVATLTAACAQHC-----PDAMICIISNPVN 121 (314)
T ss_dssp CSEEEECCSCCCCT----TCCGG---GGHHHHHHHHHHHHHHHHHHC-----TTSEEEECSSCHH
T ss_pred CCEEEECCCcCCCC----CCcHH---HHHHHHHHHHHHHHHHHHhhC-----CCeEEEEECCCcc
Confidence 89999999975321 22322 346677766666666555442 3478888765443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0022 Score=59.73 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=49.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++||+|++|++|..+++.+...|+ +|+.+++++++.+.+. ++ |... .+|..+.+ .+.+.++ ..+++|+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~-~l---Ga~~---~i~~~~~~--~~~~~~~--~~~~~d~ 219 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLR-VL---GAKE---VLAREDVM--AERIRPL--DKQRWAA 219 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHH-HT---TCSE---EEECC-----------C--CSCCEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-Hc---CCcE---EEecCCcH--HHHHHHh--cCCcccE
Confidence 799999999999999999988997 7999999876665543 33 3332 23555432 2222222 1246999
Q ss_pred EEecCcc
Q 015844 168 LVCNAAV 174 (399)
Q Consensus 168 lv~nAg~ 174 (399)
+|+++|.
T Consensus 220 vid~~g~ 226 (328)
T 1xa0_A 220 AVDPVGG 226 (328)
T ss_dssp EEECSTT
T ss_pred EEECCcH
Confidence 9999884
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0073 Score=54.46 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=50.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|+++|.|+ ||.|++++..|++.| ..|.++.|+.++++++. ++. +.. +++.+. ...
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~~v~V~nRt~~ka~~la-~~~-----~~~--~~~~~l--------------~~~ 173 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-LQVSVLNRSSRGLDFFQ-RLG-----CDC--FMEPPK--------------SAF 173 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHH-HHT-----CEE--ESSCCS--------------SCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HCC-----CeE--ecHHHh--------------ccC
Confidence 889999996 899999999999999 69999999998888777 553 222 233221 158
Q ss_pred cEEEecCccc
Q 015844 166 DVLVCNAAVY 175 (399)
Q Consensus 166 d~lv~nAg~~ 175 (399)
|+|||+....
T Consensus 174 DiVInaTp~G 183 (269)
T 3phh_A 174 DLIINATSAS 183 (269)
T ss_dssp SEEEECCTTC
T ss_pred CEEEEcccCC
Confidence 9999987653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.016 Score=54.61 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCC--CHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA--SLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs--~~~~v~~~~~~~~~~~ 162 (399)
.|.++||+|+ |++|...++.+...|+.+|+++++++++.+.+. ++ |.. .+ .|.. +.++..+.+.+...
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---Ga~-~v--i~~~~~~~~~~~~~i~~~~~-- 240 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI---GAD-LV--LQISKESPQEIARKVEGQLG-- 240 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---TCS-EE--EECSSCCHHHHHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---CCC-EE--EcCcccccchHHHHHHHHhC--
Confidence 5789999996 899999998888899768999999877665443 33 333 22 3544 22333222222222
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
+++|++|.++|.
T Consensus 241 ~g~D~vid~~g~ 252 (356)
T 1pl8_A 241 CKPEVTIECTGA 252 (356)
T ss_dssp SCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 479999999884
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0054 Score=58.20 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|+++||+|+ |+||...++.+...|+.+|+.+++++++.+.+. ++ |... .+|..+ .+++.+.+.++.. +
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga~~---vi~~~~~~~~~~~~~~~~~~--~ 261 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---GATD---FVNPNDHSEPISQVLSKMTN--G 261 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---TCCE---EECGGGCSSCHHHHHHHHHT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh---CCce---EEeccccchhHHHHHHHHhC--C
Confidence 5789999995 999999999888899768999999887766543 33 3321 235443 1233344444333 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|+++|.
T Consensus 262 g~D~vid~~g~ 272 (374)
T 1cdo_A 262 GVDFSLECVGN 272 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999985
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0027 Score=59.27 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=70.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-cE-----EEEeecCh--HHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-WH-----IIMACRDF--LKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~~-----vv~~~r~~--~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.+++||||+|.||..++..|+..|. .. ++++++++ +.++.....+.... .-..-+. +++ ...+
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~--~~~--~~~~---- 75 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVI--ATD--KEEI---- 75 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEE--EES--CHHH----
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEE--EcC--CcHH----
Confidence 3699999999999999999998773 24 88888864 34444444443321 1111111 111 1111
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCc-eEEEEeccc
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK-RLIIVGSIT 228 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g-~iV~vSS~~ 228 (399)
.+...|++|+.||..... .++. ...++.|+.....+.+.+..+ . +++ +|+++|-..
T Consensus 76 ---~~~daDvVvitAg~prkp----G~tR---~dll~~N~~i~~~i~~~i~~~----~-~~~~~vivvsNPv 132 (333)
T 5mdh_A 76 ---AFKDLDVAILVGSMPRRD----GMER---KDLLKANVKIFKCQGAALDKY----A-KKSVKVIVVGNPA 132 (333)
T ss_dssp ---HTTTCSEEEECCSCCCCT----TCCT---TTTHHHHHHHHHHHHHHHHHH----S-CTTCEEEECSSSH
T ss_pred ---HhCCCCEEEEeCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHh----C-CCCeEEEEcCCch
Confidence 123699999999974221 2232 345777877766666655444 2 134 577776543
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0064 Score=54.37 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=56.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-------------------HHHHHHHHHhccC--CCcEEEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KENYTIM 141 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-------------------~~~~~~~~~~~~~--~~~~~~~ 141 (399)
.+.+++|+|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+... +.++..+
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 567889999997 78999999999999988888886542 4566666666543 3445555
Q ss_pred EecCCCHHHHHHHHHHHHHcCCCccEEEecC
Q 015844 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (399)
Q Consensus 142 ~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nA 172 (399)
..++++ +.+.++++ ..|+||++.
T Consensus 104 ~~~~~~-~~~~~~~~-------~~DvVi~~~ 126 (251)
T 1zud_1 104 QQRLTG-EALKDAVA-------RADVVLDCT 126 (251)
T ss_dssp CSCCCH-HHHHHHHH-------HCSEEEECC
T ss_pred eccCCH-HHHHHHHh-------cCCEEEECC
Confidence 555543 44444443 479998764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0049 Score=58.47 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH----
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR---- 160 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~---- 160 (399)
.|.++||+|+ |++|...++.+...|+.+|+++++++++.+. .+++ |... ..|.++.+.. +.+.+
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~-a~~l---Ga~~---vi~~~~~~~~----~~i~~~~~~ 249 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRL-AEEV---GATA---TVDPSAGDVV----EAIAGPVGL 249 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHH-HHHH---TCSE---EECTTSSCHH----HHHHSTTSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHc---CCCE---EECCCCcCHH----HHHHhhhhc
Confidence 5789999998 9999999998888997689999898776553 3444 3322 2455554322 22332
Q ss_pred cCCCccEEEecCcc
Q 015844 161 SGRPLDVLVCNAAV 174 (399)
Q Consensus 161 ~~g~id~lv~nAg~ 174 (399)
..+++|++|.++|.
T Consensus 250 ~~gg~Dvvid~~G~ 263 (370)
T 4ej6_A 250 VPGGVDVVIECAGV 263 (370)
T ss_dssp STTCEEEEEECSCC
T ss_pred cCCCCCEEEECCCC
Confidence 12479999999874
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0069 Score=57.26 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHH-cCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc-C
Q 015844 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-G 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~ 162 (399)
.|.++||+||+|++|...++.+.. .|+ +|+.+++++++.+.+. ++ |... ..|..+ ++ .+.+.+. .
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~-~l---Gad~---vi~~~~--~~---~~~v~~~~~ 237 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVK-SL---GAHH---VIDHSK--PL---AAEVAALGL 237 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHH-HT---TCSE---EECTTS--CH---HHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHH-Hc---CCCE---EEeCCC--CH---HHHHHHhcC
Confidence 578999999999999998776655 475 9999999887765543 33 3332 134443 22 2333332 3
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
+++|++|.++|.
T Consensus 238 ~g~Dvvid~~g~ 249 (363)
T 4dvj_A 238 GAPAFVFSTTHT 249 (363)
T ss_dssp CCEEEEEECSCH
T ss_pred CCceEEEECCCc
Confidence 479999999884
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.01 Score=55.93 Aligned_cols=78 Identities=21% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.|.++||+|+ |++|...++.+... |+ +|+.+++++++.+.+. ++ |... ..|..+. +.+.+.++.. ..
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~---vi~~~~~--~~~~v~~~~~-g~ 253 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE-RL---GADH---VVDARRD--PVKQVMELTR-GR 253 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH-HT---TCSE---EEETTSC--HHHHHHHHTT-TC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH-Hh---CCCE---EEeccch--HHHHHHHHhC-CC
Confidence 5789999999 89999999888888 97 8999999887766543 33 3322 2355554 3333333321 22
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.++|.
T Consensus 254 g~Dvvid~~G~ 264 (359)
T 1h2b_A 254 GVNVAMDFVGS 264 (359)
T ss_dssp CEEEEEESSCC
T ss_pred CCcEEEECCCC
Confidence 69999999984
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.035 Score=51.55 Aligned_cols=116 Identities=14% Similarity=0.020 Sum_probs=71.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++.|+|+ |.+|..++..|+..|. ..|+++++++++++.....+... +..+.+...| . +
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~-----------~ 69 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y-----------E 69 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G-----------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H-----------H
Confidence 457899996 9999999999999883 38999999988776644444321 1233333222 1 1
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
.+...|++|.+||.... + ..+. ...+..|..-. +.+.+.+.+.. +++.|+++|-..
T Consensus 70 a~~~aDvVvi~ag~p~k--p--G~~R---~dL~~~N~~Iv----~~i~~~I~~~~-p~a~vlvvtNPv 125 (326)
T 3pqe_A 70 DCKDADIVCICAGANQK--P--GETR---LELVEKNLKIF----KGIVSEVMASG-FDGIFLVATNPV 125 (326)
T ss_dssp GGTTCSEEEECCSCCCC--T--TCCH---HHHHHHHHHHH----HHHHHHHHHTT-CCSEEEECSSSH
T ss_pred HhCCCCEEEEecccCCC--C--CccH---HHHHHHHHHHH----HHHHHHHHHhc-CCeEEEEcCChH
Confidence 12368999999997422 1 2233 23455665444 44444444443 357888877543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0059 Score=57.11 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|+ |++|...++.+...|+ +|+.+++++++.+.+ +++ |... ..|..+.+..+.+.+ ..++
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~l---Ga~~---~i~~~~~~~~~~~~~----~~g~ 232 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAMGL-RVAAVDIDDAKLNLA-RRL---GAEV---AVNARDTDPAAWLQK----EIGG 232 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHT---TCSE---EEETTTSCHHHHHHH----HHSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHc---CCCE---EEeCCCcCHHHHHHH----hCCC
Confidence 6889999997 8999999999888997 999999998776644 333 3332 235555443333333 2357
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 233 ~d~vid~~g~ 242 (340)
T 3s2e_A 233 AHGVLVTAVS 242 (340)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9999999873
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0068 Score=57.51 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|+++||+|+ |+||..+++.+...|+.+|+.+++++++.+.+ +++ |... ..|..+ .+++.+.+.++.. +
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l---Ga~~---vi~~~~~~~~~~~~~~~~~~--~ 260 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV---GATE---CVNPQDYKKPIQEVLTEMSN--G 260 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT---TCSE---EECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---CCce---EecccccchhHHHHHHHHhC--C
Confidence 5789999995 99999999988889976899999988776654 333 3321 234443 1223333333322 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.++|.
T Consensus 261 g~D~vid~~g~ 271 (374)
T 2jhf_A 261 GVDFSFEVIGR 271 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEECCCC
Confidence 79999999985
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.011 Score=55.93 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |+||...++.+...|+ +|+++++++++.+.+. ++ |... ..|..+.+.+++ +. ++
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~-~l---Ga~~---vi~~~~~~~~~~----~~---~g 257 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAK-AL---GADE---VVNSRNADEMAA----HL---KS 257 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH-HH---TCSE---EEETTCHHHHHT----TT---TC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCcE---EeccccHHHHHH----hh---cC
Confidence 5789999997 8999999998888997 7999999887766544 34 3222 246666543322 21 47
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 258 ~Dvvid~~g~ 267 (369)
T 1uuf_A 258 FDFILNTVAA 267 (369)
T ss_dssp EEEEEECCSS
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0076 Score=57.13 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|.++||+|+ |+||...++.+...|+.+|+.+++++++.+.+. ++ |... ..|..+ .+++.+.+.++.. +
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga~~---vi~~~~~~~~~~~~v~~~~~--~ 259 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF---GATE---CINPQDFSKPIQEVLIEMTD--G 259 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH---TCSE---EECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc---CCce---EeccccccccHHHHHHHHhC--C
Confidence 5789999996 999999999888889768999999887766543 34 2221 134443 1223333333322 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.++|.
T Consensus 260 g~D~vid~~g~ 270 (373)
T 2fzw_A 260 GVDYSFECIGN 270 (373)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCc
Confidence 79999999885
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0047 Score=58.76 Aligned_cols=80 Identities=21% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|.++||+|+ |+||...++.+...|+.+|+++++++++.+.+ +++ |... ..|..+ .+++.+.+.++. .+
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~---vi~~~~~~~~~~~~i~~~~--~g 262 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKF---GVNE---FVNPKDHDKPIQEVIVDLT--DG 262 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTT---TCCE---EECGGGCSSCHHHHHHHHT--TS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCcE---EEccccCchhHHHHHHHhc--CC
Confidence 5789999998 99999999988889976899999988776633 333 3332 234432 223333333332 24
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.++|.
T Consensus 263 g~D~vid~~g~ 273 (378)
T 3uko_A 263 GVDYSFECIGN 273 (378)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.013 Score=56.22 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=54.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
-.|.++||+|+ |++|...++.+...|+.+|+.+++++++.+.+ +++ |... ..|..+.+..+.+. ++. ...
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~l---Ga~~---vi~~~~~~~~~~i~-~~t-~g~ 281 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KEL---GADH---VIDPTKENFVEAVL-DYT-NGL 281 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH---TCSE---EECTTTSCHHHHHH-HHT-TTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc---CCCE---EEcCCCCCHHHHHH-HHh-CCC
Confidence 35789999998 99999999888889976899999988776544 344 3322 23554443332222 221 123
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.++|.
T Consensus 282 g~D~vid~~g~ 292 (404)
T 3ip1_A 282 GAKLFLEATGV 292 (404)
T ss_dssp CCSEEEECSSC
T ss_pred CCCEEEECCCC
Confidence 69999999885
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.026 Score=52.80 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHc--CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~--Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.|.++||+|+ |+||...++.+... |+ +|+.+++++++.+.+. ++ |... + .|..+. ..+++++.+ .
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~-v--i~~~~~---~~~~~~~~~-g 236 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNI-TIVGISRSKKHRDFAL-EL---GADY-V--SEMKDA---ESLINKLTD-G 236 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHH-HH---TCSE-E--ECHHHH---HHHHHHHHT-T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHH-Hh---CCCE-E--eccccc---hHHHHHhhc-C
Confidence 7889999999 89999999988888 97 8999999887765543 33 2222 1 233220 123333332 2
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
.++|++|.++|.
T Consensus 237 ~g~D~vid~~g~ 248 (344)
T 2h6e_A 237 LGASIAIDLVGT 248 (344)
T ss_dssp CCEEEEEESSCC
T ss_pred CCccEEEECCCC
Confidence 379999999884
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.01 Score=56.27 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|.++||+|+ |+||...++.+...|+.+|+.+++++++.+.+ +++ |... ..|..+ .+++.+.+.++.. +
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~---vi~~~~~~~~~~~~v~~~~~--~ 264 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL---GATD---CLNPRELDKPVQDVITELTA--G 264 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT---TCSE---EECGGGCSSCHHHHHHHHHT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---CCcE---EEccccccchHHHHHHHHhC--C
Confidence 5789999995 99999999988889976899999988776654 333 3322 134442 1223333333332 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.++|.
T Consensus 265 g~Dvvid~~G~ 275 (376)
T 1e3i_A 265 GVDYSLDCAGT 275 (376)
T ss_dssp CBSEEEESSCC
T ss_pred CccEEEECCCC
Confidence 79999999985
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.007 Score=57.06 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=51.4
Q ss_pred CCEEEEEcCCChHHHHH-HHHH-HHcCCcEEEEeecChH---HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLAT-AKAL-AETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~ai-a~~l-~~~Ga~~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.++||+|+ |++|... ++.+ ...|+.+|+.++++.+ +.+.+ +++ |. ..+ |..+.+ +.+ +.++
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~l---Ga--~~v--~~~~~~-~~~-i~~~-- 239 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EEL---DA--TYV--DSRQTP-VED-VPDV-- 239 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HHT---TC--EEE--ETTTSC-GGG-HHHH--
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HHc---CC--ccc--CCCccC-HHH-HHHh--
Confidence 389999999 9999998 7776 6789855999999876 65544 333 33 222 555432 333 4444
Q ss_pred cCCCccEEEecCcc
Q 015844 161 SGRPLDVLVCNAAV 174 (399)
Q Consensus 161 ~~g~id~lv~nAg~ 174 (399)
.+++|++|.++|.
T Consensus 240 -~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 240 -YEQMDFIYEATGF 252 (357)
T ss_dssp -SCCEEEEEECSCC
T ss_pred -CCCCCEEEECCCC
Confidence 2379999999884
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0043 Score=56.44 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=40.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~ 130 (399)
++++++++|.|+ ||.|++++..|.+.|+.+|.++.|+.++++++.+.
T Consensus 119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~ 165 (282)
T 3fbt_A 119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE 165 (282)
T ss_dssp CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTT
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh
Confidence 567999999997 69999999999999977999999998887766543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.012 Score=55.45 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |+||...++.+...|+ +|+++++++++.+.+.+++ |... ..|..+.+.+. +..+.
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~l---Ga~~---vi~~~~~~~~~-------~~~~g 244 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDL---GADD---YVIGSDQAKMS-------ELADS 244 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTS---CCSC---EEETTCHHHHH-------HSTTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHc---CCce---eeccccHHHHH-------HhcCC
Confidence 6889999995 9999999998888997 8999999877665544333 3322 13555543322 22347
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 245 ~D~vid~~g~ 254 (357)
T 2cf5_A 245 LDYVIDTVPV 254 (357)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.022 Score=52.88 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=67.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+..++++.|+|+ |++|..++..|+..|. ..|+++++++++++.....+.... ..+.+...| .
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~---~---------- 71 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE---Y---------- 71 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC---G----------
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc---H----------
Confidence 345678999996 9999999999999883 489999999887776555553321 123322211 1
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+.+...|++|..||..... .++. ...++.|..- ++.+.+.+.+.. +++.|+++|-..
T Consensus 72 -~a~~~aDiVvi~ag~~~kp----G~tR---~dL~~~N~~I----~~~i~~~i~~~~-p~a~ilvvtNPv 128 (326)
T 3vku_A 72 -SDAKDADLVVITAGAPQKP----GETR---LDLVNKNLKI----LKSIVDPIVDSG-FNGIFLVAANPV 128 (326)
T ss_dssp -GGGTTCSEEEECCCCC-----------------------C----HHHHHHHHHTTT-CCSEEEECSSSH
T ss_pred -HHhcCCCEEEECCCCCCCC----CchH---HHHHHHHHHH----HHHHHHHHHhcC-CceEEEEccCch
Confidence 1234699999999974221 1222 2345556543 444555555543 457888876543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.015 Score=55.02 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=53.0
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
-.|.++||+|++|++|...++.+...|+ +|+.+. ++++.+ ..+++ |... ..|..+.+-.+. +.++. .+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~-~~~~l---Ga~~---vi~~~~~~~~~~-v~~~t--~g 230 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFD-LAKSR---GAEE---VFDYRAPNLAQT-IRTYT--KN 230 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHH-HHHHT---TCSE---EEETTSTTHHHH-HHHHT--TT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHH-HHHHc---CCcE---EEECCCchHHHH-HHHHc--cC
Confidence 4688999999999999999999989997 788776 555544 33444 3322 235555433222 22221 24
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.++|.
T Consensus 231 ~~d~v~d~~g~ 241 (371)
T 3gqv_A 231 NLRYALDCITN 241 (371)
T ss_dssp CCCEEEESSCS
T ss_pred CccEEEECCCc
Confidence 69999999985
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0056 Score=57.79 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCH-HHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (399)
.|.++||+|+ |+||..+++.+...|+ +|+.+++++++.+.+. ++ |... + .|..+. +. .+.+. +
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~-v--~~~~~~~~~----~~~~~---~ 242 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGA-ETYVISRSSRKREDAM-KM---GADH-Y--IATLEEGDW----GEKYF---D 242 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHH-HH---TCSE-E--EEGGGTSCH----HHHSC---S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH-Hc---CCCE-E--EcCcCchHH----HHHhh---c
Confidence 5789999999 9999999998888997 7999999877765543 33 2222 2 344332 21 22221 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.++|.
T Consensus 243 ~~D~vid~~g~ 253 (360)
T 1piw_A 243 TFDLIVVCASS 253 (360)
T ss_dssp CEEEEEECCSC
T ss_pred CCCEEEECCCC
Confidence 79999999986
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.012 Score=54.81 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+++|+|.|+ ||+|.++++.|+..|..++.+++++
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCC
Confidence 567889999987 7999999999999998899998875
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=56.11 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=55.5
Q ss_pred cCCCEEEEEc-CCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITG-ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG-~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
..+.++||.| |+|++|...++.+...|+ +|+.+++++++.+.+. ++ |... ..|..+.+-.+++.+....
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~---~~~~~~~~~~~~v~~~t~~-- 238 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLK-AQ---GAVH---VCNAASPTFMQDLTEALVS-- 238 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHH-HT---TCSC---EEETTSTTHHHHHHHHHHH--
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hC---CCcE---EEeCCChHHHHHHHHHhcC--
Confidence 3578899997 999999999998888998 8999999887766543 33 3322 1355544333333332221
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
..+|++|.++|.
T Consensus 239 ~g~d~v~d~~g~ 250 (379)
T 3iup_A 239 TGATIAFDATGG 250 (379)
T ss_dssp HCCCEEEESCEE
T ss_pred CCceEEEECCCc
Confidence 269999999985
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.015 Score=55.60 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||.|+ |++|...++.+...|+.+|+++++++++.+.+ +++ |.. . +|.++.+.+.+.+.++.. ..+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~--~--i~~~~~~~~~~~v~~~t~-g~g 254 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQ---GFE--I--ADLSLDTPLHEQIAALLG-EPE 254 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT---TCE--E--EETTSSSCHHHHHHHHHS-SSC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HHc---CCc--E--EccCCcchHHHHHHHHhC-CCC
Confidence 5789999995 99999998888888976799999988776654 333 332 2 455543322222222221 236
Q ss_pred ccEEEecCccc
Q 015844 165 LDVLVCNAAVY 175 (399)
Q Consensus 165 id~lv~nAg~~ 175 (399)
+|++|.++|..
T Consensus 255 ~Dvvid~~G~~ 265 (398)
T 1kol_A 255 VDCAVDAVGFE 265 (398)
T ss_dssp EEEEEECCCTT
T ss_pred CCEEEECCCCc
Confidence 99999999863
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0076 Score=55.90 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+||+|++|...++.+...|+ +|+.++++ ++ .+..+++ |... ..|..+.+.+. +...+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~-~~-~~~~~~l---Ga~~---~i~~~~~~~~~-------~~~~g 215 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASK-RN-HAFLKAL---GAEQ---CINYHEEDFLL-------AISTP 215 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECH-HH-HHHHHHH---TCSE---EEETTTSCHHH-------HCCSC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEecc-ch-HHHHHHc---CCCE---EEeCCCcchhh-------hhccC
Confidence 588999999999999999999999997 88888754 33 3344444 3332 23554433221 22247
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 216 ~D~v~d~~g~ 225 (321)
T 3tqh_A 216 VDAVIDLVGG 225 (321)
T ss_dssp EEEEEESSCH
T ss_pred CCEEEECCCc
Confidence 9999999884
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.092 Score=49.02 Aligned_cols=121 Identities=11% Similarity=0.052 Sum_probs=69.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCC------cEEEEeecChH--HHHHHHHHhccC--CCcEEEEEecCCCHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGK------WHIIMACRDFL--KAERAAKSAGMA--KENYTIMHLDLASLDSVR 152 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga------~~vv~~~r~~~--~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~ 152 (399)
.++.-+|.|+||+|+||..++..|+.... ..+.+++.++. .++...-++... ......+.. ++..
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~--~~~~--- 95 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT--ADPR--- 95 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE--SCHH---
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc--CChH---
Confidence 34455899999999999999999987542 16888887653 334333333321 111222222 1221
Q ss_pred HHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 153 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 153 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
+ .+...|++|..||....+ .++.++ .++.|.. +++.+.+.+.+...++.+|+.+|-
T Consensus 96 ~-------a~~~advVvi~aG~prkp----GmtR~D---Ll~~Na~----I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 96 V-------AFDGVAIAIMCGAFPRKA----GMERKD---LLEMNAR----IFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp H-------HTTTCSEEEECCCCCCCT----TCCHHH---HHHHHHH----HHHHHHHHHHHHSCTTCEEEECSS
T ss_pred H-------HhCCCCEEEECCCCCCCC----CCCHHH---HHHHhHH----HHHHHHHHHHhhccCceEEEEeCC
Confidence 1 134799999999985322 345544 4666654 445555555543322345666654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.011 Score=55.95 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|.++||+|+ |+||...++.+...|+.+|+.+++++++.+.+. ++ |... + .|..+ .+++.+.+.++.. +
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---Ga~~-v--i~~~~~~~~~~~~i~~~t~--g 260 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL---GATE-C--LNPKDYDKPIYEVICEKTN--G 260 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT---TCSE-E--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---CCcE-E--EecccccchHHHHHHHHhC--C
Confidence 5789999995 999999998888889768999999887766543 33 3322 1 34432 1223333333322 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.++|.
T Consensus 261 g~Dvvid~~g~ 271 (373)
T 1p0f_A 261 GVDYAVECAGR 271 (373)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0089 Score=52.65 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=53.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
.+.++|.|+ |.+|..+++.|.+.| . |++++++++..+.+. ..+.++.+|.++++.++++ .....
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a------~i~~a 72 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEKA------NVRGA 72 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESCGGGHHHHHH-------TTCEEEESCTTCHHHHHHT------TCTTC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEECCHHHHHHHh-------cCCeEEEcCCCCHHHHHhc------Ccchh
Confidence 357889997 899999999999999 6 889999877665443 1367889999999866543 12368
Q ss_pred cEEEecC
Q 015844 166 DVLVCNA 172 (399)
Q Consensus 166 d~lv~nA 172 (399)
|.+|.+.
T Consensus 73 d~vi~~~ 79 (234)
T 2aef_A 73 RAVIVDL 79 (234)
T ss_dssp SEEEECC
T ss_pred cEEEEcC
Confidence 8888764
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0041 Score=55.68 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=37.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~ 128 (399)
.+++ +++|.|+ ||.|++++..|++.|+.+|++++|+.++++++.
T Consensus 106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la 149 (253)
T 3u62_A 106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALD 149 (253)
T ss_dssp CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCC
T ss_pred CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 3567 8999986 899999999999999768999999987765543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0053 Score=57.89 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.|.++||+||+|++|...++.+...|+ +++.+.++
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~ 201 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRD 201 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecC
Confidence 588999999999999999888878897 66665544
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0081 Score=56.39 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |+||...++.+...|+ +|+.+++++++.+.+. ++ |....+ ++.+.+.+ .
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~v~-----~~~~~~~~----------~ 234 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGA-EVSVFARNEHKKQDAL-SM---GVKHFY-----TDPKQCKE----------E 234 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHH-HT---TCSEEE-----SSGGGCCS----------C
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH-hc---CCCeec-----CCHHHHhc----------C
Confidence 5889999997 9999999998888997 8999999887766443 33 333322 33332211 6
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 235 ~D~vid~~g~ 244 (348)
T 3two_A 235 LDFIISTIPT 244 (348)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCc
Confidence 9999999885
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.02 Score=54.23 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|+++||+|+ |+||...++.+...|+.+|+.+++++++.+.+ +++ |... + .|..+.+-.+++ .++. .++
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~-v--i~~~~~~~~~~~-~~~~--~gg 258 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQL---GATH-V--INSKTQDPVAAI-KEIT--DGG 258 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHH---TCSE-E--EETTTSCHHHHH-HHHT--TSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc---CCCE-E--ecCCccCHHHHH-HHhc--CCC
Confidence 5789999995 99999999888888976799999988776554 333 2322 2 344443222222 2221 237
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 259 ~D~vid~~g~ 268 (371)
T 1f8f_A 259 VNFALESTGS 268 (371)
T ss_dssp EEEEEECSCC
T ss_pred CcEEEECCCC
Confidence 9999999984
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.018 Score=55.17 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=37.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
.+.+++++|+|+ |.+|+.+++.+...|+ +|++++++....+.+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGA-IVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 367899999996 8999999999999997 899999998776654
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.90 E-value=0.077 Score=49.28 Aligned_cols=119 Identities=11% Similarity=0.033 Sum_probs=73.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
...+++.|+|+ |.+|..++..|+..|. ..|++++++.++++.....+... ......+.. .|.+
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~---------- 83 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS---------- 83 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG----------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHH----------
Confidence 34568999997 9999999999999883 48999999987777655555321 111122222 1221
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
.+...|++|..||..... .++.. ..++.|..-...+.+.+ .+.. +++.++++|-..
T Consensus 84 -~~~~aDiVvi~aG~~~kp----G~tR~---dL~~~N~~I~~~i~~~i----~~~~-p~a~vlvvtNPv 139 (331)
T 4aj2_A 84 -VTANSKLVIITAGARQQE----GESRL---NLVQRNVNIFKFIIPNV----VKYS-PQCKLLIVSNPV 139 (331)
T ss_dssp -GGTTEEEEEECCSCCCCT----TCCGG---GGHHHHHHHHHHHHHHH----HHHC-TTCEEEECSSSH
T ss_pred -HhCCCCEEEEccCCCCCC----CccHH---HHHHHHHHHHHHHHHHH----HHHC-CCeEEEEecChH
Confidence 123699999999974321 23433 35666665444444444 4432 357888887543
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.019 Score=57.31 Aligned_cols=62 Identities=27% Similarity=0.250 Sum_probs=45.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-------------------HHHHHHHHHhccCC--CcEEEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAK--ENYTIM 141 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~ 141 (399)
.+.+++|+|.|+ ||+|.++|+.|+..|..++.+++.+. .+++.+.+.+.... .++..+
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~ 401 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 401 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence 567889999987 79999999999999998999998853 35565666655433 345555
Q ss_pred EecC
Q 015844 142 HLDL 145 (399)
Q Consensus 142 ~~Dv 145 (399)
..++
T Consensus 402 ~~~I 405 (615)
T 4gsl_A 402 KLSI 405 (615)
T ss_dssp CCCC
T ss_pred eccc
Confidence 5444
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.08 Score=48.82 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=70.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCc-EEEEeecC--hHHHHHHHHHhcc------CCCcEEEEEecCCCHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKW-HIIMACRD--FLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~-~vv~~~r~--~~~~~~~~~~~~~------~~~~~~~~~~Dvs~~~~v~~ 153 (399)
.++.+++.|+|+ |.+|..+|..|+..| . .|++++++ ++..+.....+.. ...++.. . ++.
T Consensus 5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g-~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~--t--~d~----- 73 (315)
T 3tl2_A 5 TIKRKKVSVIGA-GFTGATTAFLLAQKE-LADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG--T--SDY----- 73 (315)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE--E--SCG-----
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE--c--CCH-----
Confidence 455678999996 999999999999999 5 89999998 4444433322211 1122221 1 111
Q ss_pred HHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
+.+...|++|.++|..... .++. ...+..|..-...+.+.+. +.. +++.|+++|-.
T Consensus 74 ------~a~~~aDvVIiaag~p~kp----g~~R---~dl~~~N~~i~~~i~~~i~----~~~-p~a~vlvvsNP 129 (315)
T 3tl2_A 74 ------ADTADSDVVVITAGIARKP----GMSR---DDLVATNSKIMKSITRDIA----KHS-PNAIIVVLTNP 129 (315)
T ss_dssp ------GGGTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHHHHHHHHHHH----HHC-TTCEEEECCSS
T ss_pred ------HHhCCCCEEEEeCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHH----HhC-CCeEEEECCCh
Confidence 1234799999999974321 2333 3445666654444444444 332 35788887754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.017 Score=54.25 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |+||...++.+...|+.+|+.+++++++.+.+ +++ |... ..|..+.+..+.+.+ +. ...+
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l---Ga~~---vi~~~~~~~~~~v~~-~t-~g~g 235 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEY---GATD---IINYKNGDIVEQILK-AT-DGKG 235 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHH---TCCE---EECGGGSCHHHHHHH-HT-TTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHh---CCce---EEcCCCcCHHHHHHH-Hc-CCCC
Confidence 5789999985 99999999888888976899999987765543 334 2321 234444332222222 11 1226
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 236 ~D~v~d~~g~ 245 (352)
T 3fpc_A 236 VDKVVIAGGD 245 (352)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEECCCC
Confidence 9999999885
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.11 Score=47.51 Aligned_cols=115 Identities=13% Similarity=0.057 Sum_probs=69.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|+|+ |.+|.+++..|+..|. ..|++.+++++.++.....+.. ......+... +|.+ . +
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~----a-------~ 67 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----L-------L 67 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGG----G-------G
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CCHH----H-------h
Confidence 5788999 9999999999999882 2899999998776532222211 1112222211 1221 1 2
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
..-|++|..+|..... .++..+ .+..|. .+++.+.+.+.+.. +++.|+++|-..
T Consensus 68 ~~aDiVViaag~~~kp----G~~R~d---l~~~N~----~i~~~i~~~i~~~~-p~a~iivvsNPv 121 (294)
T 1oju_A 68 KGSEIIVVTAGLARKP----GMTRLD---LAHKNA----GIIKDIAKKIVENA-PESKILVVTNPM 121 (294)
T ss_dssp TTCSEEEECCCCCCCS----SCCHHH---HHHHHH----HHHHHHHHHHHTTS-TTCEEEECSSSH
T ss_pred CCCCEEEECCCCCCCC----CCcHHH---HHHHHH----HHHHHHHHHHHhhC-CCeEEEEeCCcc
Confidence 3689999999974221 233333 355554 44566666666653 467888887543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.027 Score=53.84 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |+||...++.+...|+.+|+.+++++++.+.+ +++ |. .+ +|..+.+.+.+.+.++.. ..+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga--~~--i~~~~~~~~~~~~~~~~~-g~g 254 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLL-SDA---GF--ET--IDLRNSAPLRDQIDQILG-KPE 254 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HTT---TC--EE--EETTSSSCHHHHHHHHHS-SSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHc---CC--cE--EcCCCcchHHHHHHHHhC-CCC
Confidence 5789999996 99999998888788976899999998776543 233 33 22 355543221222222221 226
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 255 ~Dvvid~~g~ 264 (398)
T 2dph_A 255 VDCGVDAVGF 264 (398)
T ss_dssp EEEEEECSCT
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.07 Score=49.42 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=68.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCc-EEEEeecChHHHHHHHHHhcc------CCCcEEEEEecCCCHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~-~vv~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
|+.+++.|+|+ |.+|.+++..|+..| . .|+++++++++++.....+.. ...++.. ..| .+
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~-~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~~------- 71 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKE-LGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---YA------- 71 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---GG-------
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---HH-------
Confidence 45568999998 999999999999998 4 899999998766543333321 1222221 112 11
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
.+..-|++|..+|..... .++.. ..+..|..- .+.+.+.+.+.. +++.|+++|-..
T Consensus 72 ----a~~~aDiVIiaag~p~k~----G~~R~---dl~~~N~~i----~~~i~~~i~~~~-p~a~iivvtNPv 127 (324)
T 3gvi_A 72 ----AIEGADVVIVTAGVPRKP----GMSRD---DLLGINLKV----MEQVGAGIKKYA-PEAFVICITNPL 127 (324)
T ss_dssp ----GGTTCSEEEECCSCCCC---------C---HHHHHHHHH----HHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred ----HHCCCCEEEEccCcCCCC----CCCHH---HHHHhhHHH----HHHHHHHHHHHC-CCeEEEecCCCc
Confidence 123689999999974221 12322 344555544 444444444443 357888877543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.11 Score=47.94 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=70.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
|+.+++.|+|+ |.+|.+++..|+..|...|+++++++++++.....+... +....+... .|.+
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~~---------- 69 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--NDYK---------- 69 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGG----------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CCHH----------
Confidence 34567888995 999999999999988228999999987766544444321 111222211 1211
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
.+...|++|..+|..... .++.. ..+..|..-...+ .+.+.+.. +++.|+++|-.
T Consensus 70 -a~~~aDvVIi~ag~p~k~----G~~R~---dl~~~N~~i~~~i----~~~i~~~~-p~a~vivvtNP 124 (321)
T 3p7m_A 70 -DLENSDVVIVTAGVPRKP----GMSRD---DLLGINIKVMQTV----GEGIKHNC-PNAFVICITNP 124 (321)
T ss_dssp -GGTTCSEEEECCSCCCCT----TCCHH---HHHHHHHHHHHHH----HHHHHHHC-TTCEEEECCSS
T ss_pred -HHCCCCEEEEcCCcCCCC----CCCHH---HHHHHhHHHHHHH----HHHHHHHC-CCcEEEEecCc
Confidence 123689999999974221 23333 3455565444444 44444433 35788887643
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.024 Score=56.58 Aligned_cols=62 Identities=27% Similarity=0.251 Sum_probs=46.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-------------------hHHHHHHHHHhccC--CCcEEEE
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-------------------FLKAERAAKSAGMA--KENYTIM 141 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-------------------~~~~~~~~~~~~~~--~~~~~~~ 141 (399)
.+.+++|+|.|+ ||+|.++++.|+..|..++.+++.+ ..+++.+.+.++.. ..++..+
T Consensus 324 kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 324 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 567889999986 7999999999999998899999654 24666666666543 3455555
Q ss_pred EecC
Q 015844 142 HLDL 145 (399)
Q Consensus 142 ~~Dv 145 (399)
..++
T Consensus 403 ~~~I 406 (598)
T 3vh1_A 403 KLSI 406 (598)
T ss_dssp CCCC
T ss_pred eccc
Confidence 5444
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.14 Score=46.26 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=34.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~ 130 (399)
+++.|.|+ |.+|..+|+.|++.| +.|++.+|+++.++...+.
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~ 46 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHG-FAVTAYDINTDALDAAKKR 46 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHH
Confidence 57778875 889999999999999 5999999998776665543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.025 Score=48.81 Aligned_cols=42 Identities=33% Similarity=0.393 Sum_probs=36.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~ 130 (399)
+++|+||+|.+|.++++.|++.| +.|++++|+.++.+...+.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~~~~~~~~~~~ 43 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH
Confidence 58899999999999999999999 5999999998776665443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.072 Score=49.64 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=53.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..|++++|+|+ ||+|...++.+...|+..++.+++++++.+. ++++ |... + .|..+.+. .+....+. ...
T Consensus 159 ~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~-a~~l---Ga~~-~--i~~~~~~~-~~~~~~~~-~~~ 228 (346)
T 4a2c_A 159 CENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLAL-AKSF---GAMQ-T--FNSSEMSA-PQMQSVLR-ELR 228 (346)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHT---TCSE-E--EETTTSCH-HHHHHHHG-GGC
T ss_pred CCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHH-HHHc---CCeE-E--EeCCCCCH-HHHHHhhc-ccC
Confidence 46889999987 8999999998889998777888888776553 3333 3332 2 34443322 22333332 235
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
..|+++.++|.
T Consensus 229 g~d~v~d~~G~ 239 (346)
T 4a2c_A 229 FNQLILETAGV 239 (346)
T ss_dssp SSEEEEECSCS
T ss_pred Ccccccccccc
Confidence 68999998874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.098 Score=49.37 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=38.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~ 129 (399)
.+.+++++|.|+ |.+|..+++.+...|+ +|++++|+..+.+.+.+
T Consensus 181 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 181 TVKPASALVLGV-GVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp EECCCEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 357789999998 7999999999999997 89999999887766544
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.22 Score=45.38 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=70.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|+|+ |+||..+|..|+.+| +..+++++.+++.++..+..+.. .+........+ |.+. .
T Consensus 2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~~~-----------~ 67 (294)
T 2x0j_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DYSL-----------L 67 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CGGG-----------G
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CHHH-----------h
Confidence 4678895 999999999998877 46899999988665544444432 12222222221 2221 2
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
..-|++|..||....+ .++.++ .++.|.. +.+.+.+.+.+.. +++.|+.+|-.
T Consensus 68 ~~aDvVvitAG~prkp----GmtR~d---Ll~~Na~----I~~~i~~~i~~~~-p~aivlvvsNP 120 (294)
T 2x0j_A 68 KGSEIIVVTAGLARKP----GMTRLD---LAHKNAG----IIKDIAKKIVENA-PESKILVVTNP 120 (294)
T ss_dssp TTCSEEEECCCCCCCS----SSCHHH---HHHHHHH----HHHHHHHHHHTTS-TTCEEEECSSS
T ss_pred CCCCEEEEecCCCCCC----CCchHH---HHHHHHH----HHHHHHHHHHhcC-CceEEEEecCc
Confidence 3689999999985322 345544 4566654 5555666665554 35677776643
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.015 Score=54.71 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=55.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-------------------HHHHHHHHHhccC--CCcEEE
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KENYTI 140 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-------------------~~~~~~~~~~~~~--~~~~~~ 140 (399)
..+.+++|+|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+... ..++..
T Consensus 114 ~~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~ 192 (353)
T 3h5n_A 114 DKLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 192 (353)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEE
Confidence 3567889999987 89999999999999988999998863 2344444444332 345666
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCCccEEEecC
Q 015844 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (399)
Q Consensus 141 ~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~nA 172 (399)
+..++++...+. + +...|+||.+.
T Consensus 193 ~~~~i~~~~~~~-------~-~~~~DlVvd~~ 216 (353)
T 3h5n_A 193 IALNINDYTDLH-------K-VPEADIWVVSA 216 (353)
T ss_dssp EECCCCSGGGGG-------G-SCCCSEEEECC
T ss_pred eecccCchhhhh-------H-hccCCEEEEec
Confidence 666666543221 1 34677777754
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.31 Score=44.74 Aligned_cols=116 Identities=16% Similarity=0.045 Sum_probs=68.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHc-C-CcEEEEeecChHHHHHHHHHhccCCCcEEEEEe-cCCCHHHHHHHHHHHHHcCCC
Q 015844 88 SVIITGASSGLGLATAKALAET-G-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHL-DLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~-G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++.|+||+|.+|..++..|+.. + +..++++++++ ..+....++........+... .-.+.+. + ..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~----~-------~~ 69 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPA----L-------EG 69 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHH----H-------TT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHH----h-------CC
Confidence 5789999999999999999875 4 35899999886 333333334332222222211 1112222 1 26
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
.|++|..||..... .++. ...++.|..-...+.+.+..+ . +++.|+++|-.
T Consensus 70 aDivii~ag~~rkp----G~~R---~dll~~N~~I~~~i~~~i~~~----~-p~a~vlvvtNP 120 (312)
T 3hhp_A 70 ADVVLISAGVARKP----GMDR---SDLFNVNAGIVKNLVQQVAKT----C-PKACIGIITNP 120 (312)
T ss_dssp CSEEEECCSCSCCT----TCCH---HHHHHHHHHHHHHHHHHHHHH----C-TTSEEEECSSC
T ss_pred CCEEEEeCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHH----C-CCcEEEEecCc
Confidence 99999999974221 2343 345666765555555554443 2 35688887654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.061 Score=50.17 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=51.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
-.|.+++|+|+ |++|...++.+...|+.+|+.+++++++.+.+ +++ |... + .|-.+ +..++ +.++.. ..
T Consensus 170 ~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~-~~l---Ga~~-~--i~~~~-~~~~~-v~~~t~-g~ 238 (345)
T 3jv7_A 170 GPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALA-REV---GADA-A--VKSGA-GAADA-IRELTG-GQ 238 (345)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH-HHT---TCSE-E--EECST-THHHH-HHHHHG-GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHc---CCCE-E--EcCCC-cHHHH-HHHHhC-CC
Confidence 35889999998 99999988877777435999999998776644 333 3332 2 23332 22222 222221 12
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|++|.++|.
T Consensus 239 g~d~v~d~~G~ 249 (345)
T 3jv7_A 239 GATAVFDFVGA 249 (345)
T ss_dssp CEEEEEESSCC
T ss_pred CCeEEEECCCC
Confidence 69999999885
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.027 Score=53.65 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~ 128 (399)
.+.+++++|+|+ |++|+.+++.+...|+ +|++++|+..+.+.+.
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRAATKEQVE 212 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 568899999996 8999999999999997 7999999877665543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.22 Score=46.03 Aligned_cols=116 Identities=10% Similarity=0.024 Sum_probs=70.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccC---CCcEEEE-EecCCCHHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIM-HLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~-~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+++.|+|+ |.+|..+|..|+..|. ..|+++++++++++.....+... ....... ..|..+
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~------------- 86 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV------------- 86 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-------------
Confidence 457899998 9999999999999883 48999999987766544433211 1111112 223221
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+...|++|..||..... .++.. +.+..|..- .+.+.+.+.+.. +++.++++|-..
T Consensus 87 -~~daDiVIitaG~p~kp----G~tR~---dll~~N~~I----~k~i~~~I~k~~-P~a~ilvvtNPv 141 (330)
T 3ldh_A 87 -SAGSKLVVITAGARQQE----GESRL---NLVQRNVNI----FKFIIPNIVKHS-PDCLKELHPELG 141 (330)
T ss_dssp -CSSCSEEEECCSCCCCS----SCCTT---GGGHHHHHH----HHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred -hCCCCEEEEeCCCCCCC----CCCHH---HHHHhhHHH----HHHHHHHHHhhC-CCceEEeCCCcc
Confidence 34699999999985322 22332 344555544 344444444432 357888877543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.024 Score=52.27 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|+ |++|...++.+...|+ +|+.++ +.++.+.+ +++ |... ++ | | .++ + .++
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~-~~l---Ga~~-v~--~--d---~~~----v---~~g 199 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGY-VVDLVS-ASLSQALA-AKR---GVRH-LY--R--E---PSQ----V---TQK 199 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHH-HHH---TEEE-EE--S--S---GGG----C---CSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHH-HHc---CCCE-EE--c--C---HHH----h---CCC
Confidence 5889999999 9999999998888998 899988 66665544 333 3322 22 3 2 222 1 457
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 200 ~Dvv~d~~g~ 209 (315)
T 3goh_A 200 YFAIFDAVNS 209 (315)
T ss_dssp EEEEECC---
T ss_pred ccEEEECCCc
Confidence 9999999885
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.18 Score=46.53 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
...++.|+|+ |.+|..++..|+..|. ..|+++++++++++.....+.. .+..+.+. .| +.+
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~~--~~~---------- 70 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK-AG--EYS---------- 70 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEE-EC--CGG----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEE-eC--CHH----------
Confidence 4457899998 9999999999998872 4899999987666543333221 11233322 22 211
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
.+...|++|..+|..... ..+.. ..+..|.. +++.+.+.+.+.. +++.||++|-.
T Consensus 71 -a~~~aDvVvi~ag~~~~~----g~~r~---dl~~~n~~----i~~~i~~~i~~~~-p~a~viv~tNP 125 (317)
T 3d0o_A 71 -DCHDADLVVICAGAAQKP----GETRL---DLVSKNLK----IFKSIVGEVMASK-FDGIFLVATNP 125 (317)
T ss_dssp -GGTTCSEEEECCCCCCCT----TCCHH---HHHHHHHH----HHHHHHHHHHHTT-CCSEEEECSSS
T ss_pred -HhCCCCEEEECCCCCCCC----CCcHH---HHHHHHHH----HHHHHHHHHHHhC-CCcEEEEecCc
Confidence 123699999999974221 12322 23444443 4445555555543 45778776543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.16 Score=48.40 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=38.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~ 129 (399)
.+.+.+++|.|+ |.+|..+++.+...|+ +|++++++..+.+.+.+
T Consensus 187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 187 TVPAAKIFVMGA-GVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS 231 (405)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 356789999998 7999999999999997 89999999877665543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.05 Score=52.27 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=34.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~ 128 (399)
..++|.|. |-+|..+++.|.+.| ..|++++++++..+.+.
T Consensus 5 ~~viIiG~-Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~ 44 (413)
T 3l9w_A 5 MRVIIAGF-GRFGQITGRLLLSSG-VKMVVLDHDPDHIETLR 44 (413)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHH
Confidence 35888886 789999999999999 59999999988776654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.052 Score=51.14 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=41.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
+++||+++|+|. |.+|..+|+.|.+.|+ +|++.+++.+++++..+++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ 216 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEE 216 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHc
Confidence 689999999986 8899999999999997 8999999988777766654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.39 Score=44.07 Aligned_cols=114 Identities=20% Similarity=0.109 Sum_probs=70.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++.|+|+ |.+|..++..|+..+ +..|+++++++++++.....+... ...+.+. .| +.++ +.
T Consensus 2 KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~-~~--~~~a-----------~~ 66 (310)
T 2xxj_A 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVW-AG--SYGD-----------LE 66 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEE-EC--CGGG-----------GT
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEE-EC--CHHH-----------hC
Confidence 5889998 999999999999876 348999999987777655555332 1222322 22 2221 23
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
..|++|..+|..... .++.. ..+..|.. +++.+.+.+.+.. +++.||++|-..
T Consensus 67 ~aD~Vii~ag~~~~~----g~~r~---dl~~~n~~----i~~~i~~~i~~~~-p~a~iiv~tNPv 119 (310)
T 2xxj_A 67 GARAVVLAAGVAQRP----GETRL---QLLDRNAQ----VFAQVVPRVLEAA-PEAVLLVATNPV 119 (310)
T ss_dssp TEEEEEECCCCCCCT----TCCHH---HHHHHHHH----HHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred CCCEEEECCCCCCCC----CcCHH---HHHHhhHH----HHHHHHHHHHHHC-CCcEEEEecCch
Confidence 699999999974321 22333 23444544 3444444444443 357888875443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.37 Score=44.41 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=68.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++.|+|+ |.+|..++..|+..+ +..|+++++++++++.....+... ...+.+. .| +.+ .+
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~-~~--~~~-----------a~ 70 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY-SG--EYS-----------DC 70 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE-EC--CGG-----------GG
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEE-EC--CHH-----------Hh
Confidence 47899998 999999999999877 347999999987777655544322 1223222 22 211 12
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
...|++|..+|..... .++.. ..+..|.. +++.+.+.+.+.. +++.||++|-..
T Consensus 71 ~~aDvVii~ag~~~~~----g~~R~---dl~~~n~~----i~~~i~~~i~~~~-p~a~iiv~tNPv 124 (318)
T 1ez4_A 71 KDADLVVITAGAPQKP----GESRL---DLVNKNLN----ILSSIVKPVVDSG-FDGIFLVAANPV 124 (318)
T ss_dssp TTCSEEEECCCC-----------------CHHHHHH----HHHHHHHHHHHTT-CCSEEEECSSSH
T ss_pred CCCCEEEECCCCCCCC----CCCHH---HHHHHHHH----HHHHHHHHHHHhC-CCeEEEEeCCcH
Confidence 4699999999974321 12222 23344433 4555555565553 467888875443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.36 Score=44.25 Aligned_cols=111 Identities=19% Similarity=0.097 Sum_probs=63.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC------CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++.|+|+ |.+|..++..|+..|...|+++++++++++.....+... ..++... +|.+.
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t----~d~~a---------- 67 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT----NNYAD---------- 67 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE----SCGGG----------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC----CCHHH----------
Confidence 46889998 999999999999999426999999887666544444321 1222211 22111
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
+...|++|.++|..... ..+.. ..+..|. .+.+.+.+.+.+.. +++.|+++|
T Consensus 68 -~~~aD~Vi~a~g~p~~~----g~~r~---dl~~~n~----~i~~~i~~~i~~~~-p~a~vi~~t 119 (309)
T 1ur5_A 68 -TANSDVIVVTSGAPRKP----GMSRE---DLIKVNA----DITRACISQAAPLS-PNAVIIMVN 119 (309)
T ss_dssp -GTTCSEEEECCCC------------C---HHHHHHH----HHHHHHHHHHGGGC-TTCEEEECC
T ss_pred -HCCCCEEEEcCCCCCCC----CCCHH---HHHHHHH----HHHHHHHHHHHhhC-CCeEEEEcC
Confidence 23689999999974321 11211 1233333 34455555555543 345555554
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.099 Score=48.73 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=50.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
..|.++||.|+ |++|...+..+...|+.+|+.+++++++.+.+ +++ +.... .|-.+.+.++++.+. .. ..
T Consensus 162 ~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~-~~~---Ga~~~---i~~~~~~~~~~v~~~-t~-g~ 231 (348)
T 4eez_A 162 KPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA-KKI---GADVT---INSGDVNPVDEIKKI-TG-GL 231 (348)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH-HHT---TCSEE---EEC-CCCHHHHHHHH-TT-SS
T ss_pred CCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhh-hhc---CCeEE---EeCCCCCHHHHhhhh-cC-CC
Confidence 35789999987 78888888888776546999999998775543 333 33322 355554443333322 11 22
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|.++.+++.
T Consensus 232 g~d~~~~~~~~ 242 (348)
T 4eez_A 232 GVQSAIVCAVA 242 (348)
T ss_dssp CEEEEEECCSC
T ss_pred CceEEEEeccC
Confidence 57888887764
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.6 Score=43.91 Aligned_cols=120 Identities=12% Similarity=0.001 Sum_probs=67.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCc-E---EEEeec----ChHHHHHHHHHhccCCC-cEEEEEecCCCHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKW-H---IIMACR----DFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~-~---vv~~~r----~~~~~~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~ 156 (399)
..++.|+||+|.||.+++..|+..+.. . |++... +.+.++..+.++..... -..-+ .+++. .
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v--~i~~~-~------ 102 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREV--SIGID-P------ 102 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEE--EEESC-H------
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCc--EEecC-C------
Confidence 357999999999999999999987631 2 665443 33345544444543221 11111 11211 0
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
.+.+...|++|..||..... .++. ...++.|.. +++...+.+.+...+++.|+++|-.
T Consensus 103 --y~~~~daDvVVitag~prkp----G~tR---~DLl~~N~~----I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 103 --YEVFEDVDWALLIGAKPRGP----GMER---AALLDINGQ----IFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp --HHHTTTCSEEEECCCCCCCT----TCCH---HHHHHHHHH----HHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred --HHHhCCCCEEEEcCCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhcCCCeEEEEecCc
Confidence 11234799999999974221 2343 344566654 4555555555532235777777654
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.094 Score=49.03 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||+|++|++|...++.+...|+.+|+.+++ .++.+.+. + +... + .| .+.+-.+. +.++ ..+.
T Consensus 142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~-~~~~~~~~--~---ga~~-~--~~-~~~~~~~~-~~~~--~~~g 208 (349)
T 4a27_A 142 EGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS-TFKHEAIK--D---SVTH-L--FD-RNADYVQE-VKRI--SAEG 208 (349)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEEC-GGGHHHHG--G---GSSE-E--EE-TTSCHHHH-HHHH--CTTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCC-HHHHHHHH--c---CCcE-E--Ec-CCccHHHH-HHHh--cCCC
Confidence 58899999999999999887766665457887774 34433322 2 2322 2 23 33222222 2222 2347
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 209 ~Dvv~d~~g~ 218 (349)
T 4a27_A 209 VDIVLDCLCG 218 (349)
T ss_dssp EEEEEEECC-
T ss_pred ceEEEECCCc
Confidence 9999999985
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.011 Score=56.47 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=37.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEE-Eeec----------ChHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHII-MACR----------DFLKAERAAKS 130 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv-~~~r----------~~~~~~~~~~~ 130 (399)
++++++++|+| .|.+|..+|+.|.+.|+ +|+ +.++ +.+.+.+..++
T Consensus 215 ~l~gk~vaVqG-~GnVG~~~a~~L~~~Ga-kVVavsD~~G~i~dp~Gld~~~l~~~~~~ 271 (419)
T 3aoe_E 215 DLRGARVVVQG-LGQVGAAVALHAERLGM-RVVAVATSMGGMYAPEGLDVAEVLSAYEA 271 (419)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEEETTEEEECTTCCCHHHHHHHHHH
T ss_pred CccCCEEEEEC-cCHHHHHHHHHHHHCCC-EEEEEEcCCCeEECCCCCCHHHHHHHHHh
Confidence 68899999998 78999999999999997 666 7777 55555555544
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.028 Score=52.14 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=48.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++||+|++|+||..+++.+...|+ +|+.+++++++.+.+. ++ |... + .|..+.+ .+.+.++ ..+++|+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~-~l---Ga~~-v--~~~~~~~--~~~~~~~--~~~~~d~ 220 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLK-QL---GASE-V--ISREDVY--DGTLKAL--SKQQWQG 220 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHH-HH---TCSE-E--EEHHHHC--SSCCCSS--CCCCEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCcE-E--EECCCch--HHHHHHh--hcCCccE
Confidence 799999999999999999888997 7999998876655443 33 2322 1 2322110 0111111 1236999
Q ss_pred EEecCc
Q 015844 168 LVCNAA 173 (399)
Q Consensus 168 lv~nAg 173 (399)
+|+++|
T Consensus 221 vid~~g 226 (330)
T 1tt7_A 221 AVDPVG 226 (330)
T ss_dssp EEESCC
T ss_pred EEECCc
Confidence 999987
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.42 Score=44.32 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=49.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc------CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++.|+|+ |.+|.++|..|+..|...|++.+++++.++.....+.. ...++.+. +|.+ +.+
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~~---ea~----- 76 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YSYE---AAL----- 76 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CSHH---HHH-----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe----CCHH---HHh-----
Confidence 46889998 99999999999999932799999998766653322211 11223221 3332 122
Q ss_pred cCCCccEEEecCccc
Q 015844 161 SGRPLDVLVCNAAVY 175 (399)
Q Consensus 161 ~~g~id~lv~nAg~~ 175 (399)
...|++|..+|..
T Consensus 77 --~~aDiVi~a~g~p 89 (331)
T 1pzg_A 77 --TGADCVIVTAGLT 89 (331)
T ss_dssp --TTCSEEEECCSCS
T ss_pred --CCCCEEEEccCCC
Confidence 2589999999974
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.054 Score=50.05 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~ 128 (399)
++ +||+|++|++|...++.+...|+ +|+.+++++++.+.+.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~ 188 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLK 188 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHH
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 45 99999999999999999999998 9999999887766553
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.36 Score=44.17 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=61.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc--EEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETGKW--HIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~--~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|+|+ |.+|..++..|+..| . .|+++++++++++.....+.... ....+.. ++.+ ..
T Consensus 2 kI~VIGa-G~vG~~la~~la~~g-~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~~-----------a~ 65 (304)
T 2v6b_A 2 KVGVVGT-GFVGSTAAFALVLRG-SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GGHS-----------EL 65 (304)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---ECGG-----------GG
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CCHH-----------Hh
Confidence 5788998 999999999999998 5 89999999876665444443211 1222221 1211 12
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
...|++|.++|..... ..+. ...+..|+.-...+.+.+.++ . +++.||++|-
T Consensus 66 ~~aDvVIi~~~~~~~~----g~~r---~dl~~~n~~i~~~i~~~i~~~----~-p~~~vi~~tN 117 (304)
T 2v6b_A 66 ADAQVVILTAGANQKP----GESR---LDLLEKNADIFRELVPQITRA----A-PDAVLLVTSN 117 (304)
T ss_dssp TTCSEEEECC-------------------CHHHHHHHHHHHHHHHHHH----C-SSSEEEECSS
T ss_pred CCCCEEEEcCCCCCCC----CCcH---HHHHHhHHHHHHHHHHHHHHh----C-CCeEEEEecC
Confidence 3689999999874221 1122 223455555444444444443 2 2456666543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.19 Score=45.44 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=36.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~ 129 (399)
+++.|.|++|.+|.++++.|++.| +.|++++|+.+..+.+.+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~ 53 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSA-HHLAAIEIAPEGRDRLQG 53 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHh
Confidence 479999999999999999999999 599999999877666543
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.59 Score=42.93 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=67.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|+|+ |.+|..++..|+..|. ..|+++++++++++....++.. .+....+...| +. +.+
T Consensus 2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~~-----------~a~ 67 (314)
T 3nep_X 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--DY-----------GPT 67 (314)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--SS-----------GGG
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--CH-----------HHh
Confidence 4788896 9999999999998882 3899999998766544333321 11122222122 11 123
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
...|++|.+||..... .++. ...+..|.. +++.+.+.+.+.. +++.|+++|-..
T Consensus 68 ~~aDvVii~ag~~~kp----G~~R---~dl~~~N~~----i~~~i~~~i~~~~-p~a~vivvtNPv 121 (314)
T 3nep_X 68 EDSDVCIITAGLPRSP----GMSR---DDLLAKNTE----IVGGVTEQFVEGS-PDSTIIVVANPL 121 (314)
T ss_dssp TTCSEEEECCCC-----------C---HHHHHHHHH----HHHHHHHHHHTTC-TTCEEEECCSSH
T ss_pred CCCCEEEECCCCCCCC----CCCH---HHHHHhhHH----HHHHHHHHHHHhC-CCcEEEecCCch
Confidence 4699999999975221 2232 234555543 4555556665553 467888877543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.62 Score=42.84 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=66.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++.|+|+ |.+|..++..|+..| +..|++++++++.++.....+.. .+..+.+.. | +. +.
T Consensus 7 ~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~-----------~a 71 (316)
T 1ldn_A 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DY-----------DD 71 (316)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CG-----------GG
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cH-----------HH
Confidence 57999998 999999999998877 35899999997655543333321 111233332 2 21 11
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
+...|+||.++|+.... ..+.. ..+..|. -+.+.+.+.+.+.. +++.++++|-
T Consensus 72 l~~aDvViia~~~~~~~----g~~r~---dl~~~n~----~i~~~i~~~i~~~~-p~a~~iv~tN 124 (316)
T 1ldn_A 72 CRDADLVVICAGANQKP----GETRL---DLVDKNI----AIFRSIVESVMASG-FQGLFLVATN 124 (316)
T ss_dssp TTTCSEEEECCSCCCCT----TTCSG---GGHHHHH----HHHHHHHHHHHHHT-CCSEEEECSS
T ss_pred hCCCCEEEEcCCCCCCC----CCCHH---HHHHcCh----HHHHHHHHHHHHHC-CCCEEEEeCC
Confidence 34699999999985322 12222 2344443 34444555554443 3466666643
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.069 Score=48.13 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
.+++++|.|+ ||.|++++..|.+.|+.+|.++.|+.++++++.+.+
T Consensus 118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~ 163 (271)
T 1npy_A 118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163 (271)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 4678999985 899999999999999778999999998888887766
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.0063 Score=57.10 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~ 123 (399)
.++||++.|.| .|.||+.+|+.|.+.|+ +|++.+++...
T Consensus 172 ~L~GktV~I~G-~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~ 210 (355)
T 1c1d_A 172 SLDGLTVLVQG-LGAVGGSLASLAAEAGA-QLLVADTDTER 210 (355)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCC-EEEEEeCCccH
Confidence 58999999997 58999999999999997 88888888654
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.042 Score=49.68 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=51.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+.+++++|.|+ |++|+++++.|.+.|+ .|++++|+.++.+++.+.+ + +.. .+ + +.+++
T Consensus 126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~~~~---g--~~~--~~--~---~~~~~------- 184 (275)
T 2hk9_A 126 EVKEKSILVLGA-GGASRAVIYALVKEGA-KVFLWNRTKEKAIKLAQKF---P--LEV--VN--S---PEEVI------- 184 (275)
T ss_dssp TGGGSEEEEECC-SHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHTTTS---C--EEE--CS--C---GGGTG-------
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHc---C--Cee--eh--h---HHhhh-------
Confidence 467889999996 7999999999999997 9999999987766654332 2 211 11 1 11111
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+||++....
T Consensus 185 ~~aDiVi~atp~~ 197 (275)
T 2hk9_A 185 DKVQVIVNTTSVG 197 (275)
T ss_dssp GGCSEEEECSSTT
T ss_pred cCCCEEEEeCCCC
Confidence 2589999988764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.097 Score=47.87 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=51.4
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..+.+++++|.|+ |+||+++++.|...|+ +|++++|+.++.+.+.+ . +. ..+ +. ++++++
T Consensus 153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~-~---g~--~~~--~~---~~l~~~------- 212 (300)
T 2rir_A 153 YTIHGSQVAVLGL-GRTGMTIARTFAALGA-NVKVGARSSAHLARITE-M---GL--VPF--HT---DELKEH------- 212 (300)
T ss_dssp SCSTTSEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TC--EEE--EG---GGHHHH-------
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-C---CC--eEE--ch---hhHHHH-------
Confidence 3678999999996 8999999999999996 99999999766544332 1 22 222 11 122222
Q ss_pred CCCccEEEecCcc
Q 015844 162 GRPLDVLVCNAAV 174 (399)
Q Consensus 162 ~g~id~lv~nAg~ 174 (399)
....|+||++...
T Consensus 213 l~~aDvVi~~~p~ 225 (300)
T 2rir_A 213 VKDIDICINTIPS 225 (300)
T ss_dssp STTCSEEEECCSS
T ss_pred hhCCCEEEECCCh
Confidence 2368999998764
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.41 Score=44.24 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=69.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
..++.|+|+ |.+|..++..|+..+ +..|+++++++++++.....+... ...+.+. .| +.+.
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~~--~~~a----------- 73 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY-SA--EYSD----------- 73 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-EC--CGGG-----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEE-EC--CHHH-----------
Confidence 357999998 999999999998877 347999999987777655554322 1223222 22 2111
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+...|++|..+|..... .++.. ..+..|..- ++.+.+.+.+.. +++.||++|-..
T Consensus 74 ~~~aDvVii~ag~~~k~----g~~R~---dl~~~n~~i----~~~i~~~i~~~~-p~a~iiv~tNPv 128 (326)
T 2zqz_A 74 AKDADLVVITAGAPQKP----GETRL---DLVNKNLKI----LKSIVDPIVDSG-FNGIFLVAANPV 128 (326)
T ss_dssp GGGCSEEEECCCCC---------CHH---HHHHHHHHH----HHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred hCCCCEEEEcCCCCCCC----CCCHH---HHHHHHHHH----HHHHHHHHHHHC-CCeEEEEeCCcH
Confidence 23699999999974221 22332 334455443 444444444443 457888875443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.17 Score=45.79 Aligned_cols=84 Identities=10% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCc---EEEEeecChHHHHHHHHHhcc----------CCCcEEEEEecCCCHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKW---HIIMACRDFLKAERAAKSAGM----------AKENYTIMHLDLASLDSVR 152 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~---~vv~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~Dvs~~~~v~ 152 (399)
.+++.|.|+ |-+|.++++.|++.| + .|++++|+.++.+.+.+.+.. ...++.++.+ .+..+.
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g-~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~~ 77 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANG-YDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQIK 77 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTT-CCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCC-CCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHHH
Confidence 356778877 899999999999999 6 899999998888777654210 1234444443 345667
Q ss_pred HHHHHHHHc-CCCccEEEecCcc
Q 015844 153 QFVDTFRRS-GRPLDVLVCNAAV 174 (399)
Q Consensus 153 ~~~~~~~~~-~g~id~lv~nAg~ 174 (399)
.+++++... ..+=.++|++++.
T Consensus 78 ~vl~~l~~~~l~~~~iiiS~~ag 100 (280)
T 3tri_A 78 MVCEELKDILSETKILVISLAVG 100 (280)
T ss_dssp HHHHHHHHHHHTTTCEEEECCTT
T ss_pred HHHHHHHhhccCCCeEEEEecCC
Confidence 777776654 3222267766543
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.67 Score=42.75 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=49.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC------CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++.|+|+ |.+|..++..|+..|...|+++++++++++.....+... ..++... .| .+
T Consensus 5 ~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d---~~----------- 68 (322)
T 1t2d_A 5 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NT---YD----------- 68 (322)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CC---GG-----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CC---HH-----------
Confidence 46889998 999999999999999426999999987766544443221 1222211 22 11
Q ss_pred cCCCccEEEecCccc
Q 015844 161 SGRPLDVLVCNAAVY 175 (399)
Q Consensus 161 ~~g~id~lv~nAg~~ 175 (399)
.+...|++|.++|..
T Consensus 69 al~~aD~Vi~a~g~p 83 (322)
T 1t2d_A 69 DLAGADVVIVTAGFT 83 (322)
T ss_dssp GGTTCSEEEECCSCS
T ss_pred HhCCCCEEEEeCCCC
Confidence 123689999999974
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.093 Score=51.16 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=55.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.++|.|+ |-+|..+|+.|.++| +.|++++++++..+.+.+.+ .+.++.+|-++++.++++= ....|.
T Consensus 5 ~iiI~G~-G~vG~~la~~L~~~~-~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Ag------i~~ad~ 71 (461)
T 4g65_A 5 KIIILGA-GQVGGTLAENLVGEN-NDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAG------AQDADM 71 (461)
T ss_dssp EEEEECC-SHHHHHHHHHTCSTT-EEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcC------CCcCCE
Confidence 5788877 789999999999999 69999999998888776654 3567889999988776551 125677
Q ss_pred EEec
Q 015844 168 LVCN 171 (399)
Q Consensus 168 lv~n 171 (399)
+|..
T Consensus 72 ~ia~ 75 (461)
T 4g65_A 72 LVAV 75 (461)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.07 Score=49.63 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=54.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
.+.++|.|+ |.+|..+++.|.++| . |++++++++..+ ..+ ..+.++.+|.+|++.++++ ...+.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a------~i~~a 178 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKA------NVRGA 178 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHT------CSTTE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhc------Chhhc
Confidence 457999996 899999999999999 6 999999987766 432 2467899999999887654 12367
Q ss_pred cEEEecC
Q 015844 166 DVLVCNA 172 (399)
Q Consensus 166 d~lv~nA 172 (399)
|.+|...
T Consensus 179 ~~vi~~~ 185 (336)
T 1lnq_A 179 RAVIVDL 185 (336)
T ss_dssp EEEEECC
T ss_pred cEEEEcC
Confidence 8887654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.29 Score=44.88 Aligned_cols=113 Identities=20% Similarity=0.171 Sum_probs=66.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+.|+|+ |.+|..++..|+..|...|+++++++++++.....+.. .+....+... +|.+ .+..
T Consensus 2 I~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~-----------a~~~ 67 (308)
T 2d4a_B 2 ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSYE-----------DMRG 67 (308)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCGG-----------GGTT
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCHH-----------HhCC
Confidence 678898 99999999999988853599999998776654444322 1112222211 1211 1236
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
.|++|..+|..... .++.. ..+..|.. +.+.+.+.+.+.. +++.||++|-.
T Consensus 68 aD~Vi~~ag~~~k~----G~~r~---dl~~~n~~----i~~~i~~~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 68 SDIVLVTAGIGRKP----GMTRE---QLLEANAN----TMADLAEKIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CSEEEECCSCCCCS----SCCTH---HHHHHHHH----HHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCEEEEeCCCCCCC----CCcHH---HHHHHHHH----HHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 99999999975322 22332 22444443 4455555555433 35788887543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.11 Score=47.27 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=37.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
.+.+++++|.|. |+||+++++.|...|+ +|++++|+.++.+..
T Consensus 152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~ 194 (293)
T 3d4o_A 152 TIHGANVAVLGL-GRVGMSVARKFAALGA-KVKVGARESDLLARI 194 (293)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred CCCCCEEEEEee-CHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH
Confidence 678999999995 8999999999999996 999999997665443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.036 Score=51.05 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=54.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.+++++|.|++.-+|+.+|+.|+..|+ .|.++.|+........+.+.. .......+..++++++.+.+.
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~--~~~~~t~~~~t~~~~L~e~l~------ 244 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKL--NKHHVEDLGEYSEDLLKKCSL------ 244 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSC--CCCEEEEEEECCHHHHHHHHH------
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhh--hcccccccccccHhHHHHHhc------
Confidence 68899999999887789999999999997 899998873221111111110 001111122244566666655
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
.-|+||...|..
T Consensus 245 -~ADIVIsAtg~p 256 (320)
T 1edz_A 245 -DSDVVITGVPSE 256 (320)
T ss_dssp -HCSEEEECCCCT
T ss_pred -cCCEEEECCCCC
Confidence 489999998863
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.11 Score=61.00 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc--C
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~--~ 162 (399)
.|.+|||.||+||+|.+.++.....|+ +|++++++.++.+.+.+.+...+... + .|-.+.+-. +.+.+. .
T Consensus 1667 ~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~-v--~~~~~~~~~----~~i~~~t~g 1738 (2512)
T 2vz8_A 1667 PGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETC-F--ANSRDTSFE----QHVLRHTAG 1738 (2512)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTT-E--EESSSSHHH----HHHHHTTTS
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceE-E--ecCCCHHHH----HHHHHhcCC
Confidence 588999999999999999988888997 89999988877666655432222221 1 244443322 333332 2
Q ss_pred CCccEEEecCc
Q 015844 163 RPLDVLVCNAA 173 (399)
Q Consensus 163 g~id~lv~nAg 173 (399)
.++|++|++.|
T Consensus 1739 ~GvDvVld~~g 1749 (2512)
T 2vz8_A 1739 KGVDLVLNSLA 1749 (2512)
T ss_dssp CCEEEEEECCC
T ss_pred CCceEEEECCC
Confidence 35899998765
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.068 Score=48.21 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
+++||+++|.|.++-+|+.+|..|+..|| .|.++.|.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~ 193 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIK 193 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 68999999999999999999999999998 88887664
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.16 Score=46.87 Aligned_cols=114 Identities=15% Similarity=0.041 Sum_probs=64.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++.|+|+ |.+|..++..|+..| +..|++++.++++++.....+.... ..+.+. . .+. +.+
T Consensus 8 ~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~~-----------~a~ 72 (318)
T 1y6j_A 8 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GDY-----------SDV 72 (318)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CG-----------GGG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CCH-----------HHh
Confidence 46888898 999999999999987 2389999998766555444443321 122211 1 111 113
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~ 227 (399)
...|++|..+|..... ..+. ...+..|+.-...+.+.+.++ . +++.||++|-.
T Consensus 73 ~~aDvVii~~g~p~k~----g~~r---~dl~~~n~~i~~~i~~~i~~~----~-p~a~viv~tNP 125 (318)
T 1y6j_A 73 KDCDVIVVTAGANRKP----GETR---LDLAKKNVMIAKEVTQNIMKY----Y-NHGVILVVSNP 125 (318)
T ss_dssp TTCSEEEECCCC----------CH---HHHHHHHHHHHHHHHHHHHHH----C-CSCEEEECSSS
T ss_pred CCCCEEEEcCCCCCCC----CcCH---HHHHHhhHHHHHHHHHHHHHh----C-CCcEEEEecCc
Confidence 4699999999974211 2232 234566665555555555444 2 35677776443
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.08 Score=53.38 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=32.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+.+|+|.|+ ||||.++++.|+..|..++.+++.+
T Consensus 14 kL~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D 50 (640)
T 1y8q_B 14 AVAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLD 50 (640)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCC
Confidence 466778999987 8999999999999998899998875
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.34 Score=43.17 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=56.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcE-EEEeecChHHHHHHHHHhc--------cCCCcEEEEEecCCCHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWH-IIMACRDFLKAERAAKSAG--------MAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~-vv~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
+.++.|.|+ |.+|..+++.|++.|. . |.+++|+.+..+.+.+.+. ..-.+..++..= .....+.++++
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~a-v~~~~~~~v~~ 86 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGF-RIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVS-LKDSAFAELLQ 86 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEEC-CCHHHHHHHHH
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEe-cCHHHHHHHHH
Confidence 346888886 8999999999999995 6 8899999888777665431 000112222222 33446677887
Q ss_pred HHHHcCCCccEEEecCccc
Q 015844 157 TFRRSGRPLDVLVCNAAVY 175 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~ 175 (399)
++.....+=.++|++.+..
T Consensus 87 ~l~~~~~~~~ivv~~s~~~ 105 (266)
T 3d1l_A 87 GIVEGKREEALMVHTAGSI 105 (266)
T ss_dssp HHHTTCCTTCEEEECCTTS
T ss_pred HHHhhcCCCcEEEECCCCC
Confidence 7765443334677776653
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.11 Score=46.45 Aligned_cols=69 Identities=29% Similarity=0.309 Sum_probs=51.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++ +++|.|+ |++|+++++.|.+.|+ +|.+++|+.++.+.+.+.+. .. . .+.+ + +
T Consensus 114 ~l~~-~v~iiG~-G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~~---~~-----~--~~~~---~----~---- 169 (263)
T 2d5c_A 114 PLKG-PALVLGA-GGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFG---LR-----A--VPLE---K----A---- 169 (263)
T ss_dssp CCCS-CEEEECC-SHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHT---CE-----E--CCGG---G----G----
T ss_pred CCCC-eEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc---cc-----h--hhHh---h----c----
Confidence 5678 8999996 7899999999999997 99999999888777766553 11 1 1211 1 1
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+||++....
T Consensus 170 ~~~Divi~~tp~~ 182 (263)
T 2d5c_A 170 REARLLVNATRVG 182 (263)
T ss_dssp GGCSEEEECSSTT
T ss_pred cCCCEEEEccCCC
Confidence 2589999998764
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.18 Score=48.43 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=53.1
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++.+.+++++|.|+ |.+|+.+++.+.+.|. +|++++.+...... .+. . ..+..|..|.+.+.++++
T Consensus 30 ~~~~~~~~IlIlG~-G~lg~~~~~aa~~lG~-~v~v~d~~~~~p~~---~~a---d--~~~~~~~~d~~~l~~~a~---- 95 (419)
T 4e4t_A 30 SPILPGAWLGMVGG-GQLGRMFCFAAQSMGY-RVAVLDPDPASPAG---AVA---D--RHLRAAYDDEAALAELAG---- 95 (419)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCTTCHHH---HHS---S--EEECCCTTCHHHHHHHHH----
T ss_pred ccCCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEECCCCcCchh---hhC---C--EEEECCcCCHHHHHHHHh----
Confidence 34678999999986 5799999999999995 88888876432211 111 1 345688999998888773
Q ss_pred cCCCccEEEe
Q 015844 161 SGRPLDVLVC 170 (399)
Q Consensus 161 ~~g~id~lv~ 170 (399)
++|+|+.
T Consensus 96 ---~~D~V~~ 102 (419)
T 4e4t_A 96 ---LCEAVST 102 (419)
T ss_dssp ---HCSEEEE
T ss_pred ---cCCEEEE
Confidence 4888873
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.08 Score=51.09 Aligned_cols=37 Identities=35% Similarity=0.408 Sum_probs=31.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+.+.+|+|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 37 ~L~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D 73 (434)
T 1tt5_B 37 LLDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 73 (434)
T ss_dssp HHHTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HhcCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 346788999986 7999999999999998889888654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.18 Score=45.90 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=57.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH-hc------cCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AG------MAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~-~~------~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+++.|.| .|.+|..+|+.|++.| +.|++.+|++++.+.+.+. +. ..-. ..++..=+.+...++.+++.+.
T Consensus 16 ~~I~vIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~ 92 (296)
T 3qha_A 16 LKLGYIG-LGNMGAPMATRMTEWP-GGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELA 92 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHTTST-TCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHH
T ss_pred CeEEEEC-cCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHH
Confidence 3566776 6899999999999999 6999999998776655432 10 0001 2334445667778888888877
Q ss_pred HcCCCccEEEecCc
Q 015844 160 RSGRPLDVLVCNAA 173 (399)
Q Consensus 160 ~~~g~id~lv~nAg 173 (399)
....+=.++|++..
T Consensus 93 ~~l~~g~ivv~~st 106 (296)
T 3qha_A 93 GHAKPGTVIAIHST 106 (296)
T ss_dssp TTCCTTCEEEECSC
T ss_pred HhcCCCCEEEEeCC
Confidence 65544556776654
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.099 Score=48.90 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=31.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r 119 (399)
.+.+.+|+|.|+ ||+|.++++.|+..|..++.+++.
T Consensus 33 ~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~ 68 (346)
T 1y8q_A 33 RLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDH 68 (346)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEEC
Confidence 567789999986 799999999999999889988854
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.24 Score=43.85 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=54.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+++|.|++|.+|+.+++.+.+. |. .|+........++++.. .+.. +..|++.++.+...+..+.+. +++
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~-elva~~d~~~dl~~~~~----~~~D---vvIDfT~p~a~~~~~~~a~~~--g~~ 71 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDL-TLSAELDAGDPLSLLTD----GNTE---VVIDFTHPDVVMGNLEFLIDN--GIH 71 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTC-EEEEEECTTCCTHHHHH----TTCC---EEEECSCTTTHHHHHHHHHHT--TCE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEccCCCHHHHhc----cCCc---EEEEccChHHHHHHHHHHHHc--CCC
Confidence 5889999999999999999876 74 66644433233333222 1122 468999999999888877765 588
Q ss_pred EEEecCcc
Q 015844 167 VLVCNAAV 174 (399)
Q Consensus 167 ~lv~nAg~ 174 (399)
+||-..|.
T Consensus 72 ~VigTTG~ 79 (245)
T 1p9l_A 72 AVVGTTGF 79 (245)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 88877764
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.16 Score=45.95 Aligned_cols=85 Identities=21% Similarity=0.089 Sum_probs=53.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH-hccC------CCcEEEEEecCCCHHHHHHHH---H
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMA------KENYTIMHLDLASLDSVRQFV---D 156 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~-~~~~------~~~~~~~~~Dvs~~~~v~~~~---~ 156 (399)
+++.|.| .|.+|..+++.|++.| +.|++.+|++++.+.+.+. +... -.+..++..=+.+...++.++ +
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~ 79 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAG-CSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKH 79 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcc
Confidence 3677777 5899999999999999 6999999998776665432 0000 001223334455666777777 5
Q ss_pred HHHHcCCCccEEEecCc
Q 015844 157 TFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg 173 (399)
.+.....+=.++|++.+
T Consensus 80 ~l~~~l~~~~~vi~~st 96 (287)
T 3pef_A 80 GVLEGIGEGRGYVDMST 96 (287)
T ss_dssp CHHHHCCTTCEEEECSC
T ss_pred hHhhcCCCCCEEEeCCC
Confidence 55554433445666543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.26 Score=45.40 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=48.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc--EEEEeecChHHHHHHHHHhcc---CCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETGKW--HIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~--~vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|.|+ |.+|.+++..|+..| . .|++++++++.++.....+.. ......+. . +|.+. +
T Consensus 2 kI~VIGa-G~~G~~la~~l~~~g-~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~-~--~d~~~----~------- 65 (319)
T 1a5z_A 2 KIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY-A--GDYAD----L------- 65 (319)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE-E--CCGGG----G-------
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE-e--CCHHH----h-------
Confidence 5788898 999999999999998 5 899999998776655433321 00111111 1 23221 1
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|+||.+++..
T Consensus 66 ~~aDvViiav~~~ 78 (319)
T 1a5z_A 66 KGSDVVIVAAGVP 78 (319)
T ss_dssp TTCSEEEECCCCC
T ss_pred CCCCEEEEccCCC
Confidence 3689999999874
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.27 E-value=1.2 Score=41.17 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=33.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
+++.|+|+ |.+|..+|..|+..|...|++.+++++.++..
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~ 54 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGK 54 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 47889998 99999999999999942799999998766643
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.26 E-value=0.9 Score=41.66 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=32.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER 126 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~ 126 (399)
+++.|.|+ |.+|..+|..|+..|...|++.+++++.++.
T Consensus 5 ~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~ 43 (317)
T 2ewd_A 5 RKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQG 43 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHH
Confidence 46889998 9999999999999994279999998766654
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.055 Score=56.60 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.++||.||+||+|.+.++.....|+ +|+.++++. +.+. +. .+.... .|-.+.+-.+.+.+ .. ....
T Consensus 345 ~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~----l~-lga~~v---~~~~~~~~~~~i~~-~t-~g~G 412 (795)
T 3slk_A 345 PGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQA----VE-LSREHL---ASSRTCDFEQQFLG-AT-GGRG 412 (795)
T ss_dssp TTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGG----SC-SCGGGE---ECSSSSTHHHHHHH-HS-CSSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhh----hh-cChhhe---eecCChhHHHHHHH-Hc-CCCC
Confidence 588999999999999999988888998 888888664 2221 11 233221 24444333222222 11 1236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++++.|.
T Consensus 413 vDvVld~~gg 422 (795)
T 3slk_A 413 VDVVLNSLAG 422 (795)
T ss_dssp CSEEEECCCT
T ss_pred eEEEEECCCc
Confidence 9999998764
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.25 Score=45.55 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=54.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH-hc------cCCCcEEEEEecCCCHHHHHHHHH--
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AG------MAKENYTIMHLDLASLDSVRQFVD-- 156 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~-~~------~~~~~~~~~~~Dvs~~~~v~~~~~-- 156 (399)
.+++.|.|. |.+|..+|+.|++.| +.|++.+|++++.+.+.+. +. ..-....++..=+.+...++.++.
T Consensus 31 ~~~I~iIG~-G~mG~~~a~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 108 (320)
T 4dll_A 31 ARKITFLGT-GSMGLPMARRLCEAG-YALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ 108 (320)
T ss_dssp CSEEEEECC-TTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCC-CeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence 457777764 899999999999999 5999999998877665432 00 000112233344556667777765
Q ss_pred HHHHcCCCccEEEecCc
Q 015844 157 TFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg 173 (399)
.+.....+=.++|++..
T Consensus 109 ~~~~~l~~~~~vi~~st 125 (320)
T 4dll_A 109 GVAAAMKPGSLFLDMAS 125 (320)
T ss_dssp CHHHHCCTTCEEEECSC
T ss_pred hHHhhCCCCCEEEecCC
Confidence 45544444456666544
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.14 Score=45.91 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
+.||+++|.|.++-+|+.+|+.|...|| +|.++.+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~ 183 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK 183 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 7999999999998899999999999997 88887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 399 | ||||
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 3e-31 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 4e-27 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 8e-22 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 2e-21 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 4e-20 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 2e-19 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 2e-19 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 1e-18 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 2e-18 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-18 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 3e-18 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 6e-18 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 7e-18 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 1e-17 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 2e-17 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 3e-17 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 6e-17 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 1e-16 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 2e-16 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 4e-16 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 6e-16 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 2e-15 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 2e-15 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 3e-15 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 4e-15 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 6e-15 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-14 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 2e-14 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 3e-14 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 3e-14 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 4e-14 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 5e-14 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 9e-14 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 1e-13 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-13 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-13 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 4e-13 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 7e-13 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-12 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 2e-12 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 3e-12 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 7e-12 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 7e-12 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 1e-11 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 2e-11 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 3e-11 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 3e-11 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 4e-11 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 5e-11 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 6e-11 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 7e-11 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 8e-11 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-10 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-10 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 4e-10 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 5e-10 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 6e-10 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 6e-10 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 7e-10 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 4e-09 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 2e-08 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 3e-08 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 1e-06 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 1e-06 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 1e-04 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 3e-04 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 4e-04 |
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (296), Expect = 3e-31
Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 25/272 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG + G+GLA + L +++ RD + + A + + LD+ L
Sbjct: 6 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 65
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+R D R+ LDVLV NA + A T E+++ TN G + LL
Sbjct: 66 QSIRALRDFLRKEYGGLDVLVNNAGIAFKVADP-TPFHIQAEVTMKTNFFGTRDVCTELL 124
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGL------NSSSM 262
+K R++ V SI + + + L GL ++
Sbjct: 125 PLIKPQG----RVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 180
Query: 263 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATTGLFREH-- 317
+ + + AY +K+ + + R+ E+ I + PG + T +
Sbjct: 181 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVR-TDMAGPKAT 239
Query: 318 --------IPLFRLLFPPFQKYITKGYVSEDE 341
P++ L PP + +VSE
Sbjct: 240 KSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 271
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 106 bits (265), Expect = 4e-27
Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 44/283 (15%)
Query: 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
GSV++TGA+ G+GL + L + HII RD E+A + + ++ L
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD---VEKATELKSIKDSRVHVLPLT 59
Query: 145 LASLDSVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ S+ FV L +L+ NA V L + N L
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSM 262
L++ LL LK + + S +G + +
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG-------------------SITDN 160
Query: 263 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322
G AY+ SK + + ++ + + PG + T L ++ L
Sbjct: 161 TSGSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQ-TNLGGKNAAL-- 216
Query: 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365
+ +++ L + + +G ++ N
Sbjct: 217 ---------------TVEQSTAELISSFNKLDNSHNGRFFMRN 244
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 91.6 bits (227), Expect = 8e-22
Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
IITG+S+G+G ATA A G + + R + E + +AG++++N + D+
Sbjct: 8 AIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 66
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA---EGFELSVGTNHLGHFL 202
+ + + T LD+LV NA +P ++ T TA E ++ ++ N
Sbjct: 67 TTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 126
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L++ + ++ + SI + + +
Sbjct: 127 LTKKA---VPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNT 175
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.8 bits (225), Expect = 2e-21
Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLA 146
++TGAS G+G A A+AL + G ++ R E A A DL+
Sbjct: 13 ALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 71
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + + R +D+ + NA + P + + G++ N L + +R
Sbjct: 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLL-SGSTSGWKDMFNVNVLALSICTRE 130
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+K+ + +I + S++G
Sbjct: 131 AYQSMKERNVDDGHIININSMSG 153
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.6 bits (214), Expect = 4e-20
Identities = 41/248 (16%), Positives = 76/248 (30%), Gaps = 41/248 (16%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 140
+K++ V+ITGA G+G TA A+ +++ + E A
Sbjct: 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHT 60
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
+D ++ + + + + +LV N A + T+ E + N L H
Sbjct: 61 FVVDCSNREDIYSSAKKVKAEIGDVSILV-NNAGVVYTSDLFATQDPQIEKTFEVNVLAH 119
Query: 201 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSS 260
F ++ L + +++ ++ V S G L
Sbjct: 120 FWTTKAFLPAMTKNN--HGHIVTVASAAG-----------------HVSVPFLL------ 154
Query: 261 SMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF--HEETGIAFASLYPGCIATTGLFREHI 318
AY SK + + + TG+ L P + T +
Sbjct: 155 ------------AYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPST 202
Query: 319 PLFRLLFP 326
L L P
Sbjct: 203 SLGPTLEP 210
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 85.4 bits (211), Expect = 2e-19
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 10/172 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G TA A+ G ++ + R + E + +G++++ + D+
Sbjct: 8 VIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 66
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFL 202
+ D Q +++ + +DVLV NA +P A T + + ++ N
Sbjct: 67 TTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 126
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+++ + ++ V SI + L +
Sbjct: 127 MTKKV---KPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRST 175
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 84.7 bits (209), Expect = 2e-19
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 5/163 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+GL K L G + + + ++ A G E + D++S
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSE 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ +R L+VLV NA + LP T E F + N F+ + +
Sbjct: 65 ADWTLVMAAVQRRLGTLNVLVNNAGILLP-GDMETGRLEDFSRLLKINTESVFIGCQQGI 123
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
+K++ + V S + A R A
Sbjct: 124 AAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAA 166
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.3 bits (203), Expect = 1e-18
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG G+G +A +G +++ +D + + D+
Sbjct: 9 VVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELP----GAVFILCDVTQE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V+ V R LD +V NA + P + +A+GF + N LG + L++L L
Sbjct: 64 DDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLAL 123
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L++S +I + S+ G
Sbjct: 124 PYLRKS---QGNVINISSLVG 141
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 82.1 bits (201), Expect = 2e-18
Identities = 53/282 (18%), Positives = 101/282 (35%), Gaps = 47/282 (16%)
Query: 88 SVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
S++ITG + GLGL KAL + H+ CR+ +A+ A N I+ +DL
Sbjct: 4 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-NHSNIHILEIDL 62
Query: 146 ASLDSVRQFVDTFRRSGR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ D+ + V + L+VL NA + +A+ ++ ++ TN + +L
Sbjct: 63 RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 122
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 263
++ L LK++ ++ + N + I
Sbjct: 123 AKACLPLLKKAAKANESQPMGVGRAAIINMSSI-----------------------LGSI 159
Query: 264 DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323
G G AY+ SK + + I SL+PG + T + PL
Sbjct: 160 QGNTDGGMYAYRTSKSA-LNAATKSLSVDLYPQRIMCVSLHPGWVK-TDMGGSSAPLDV- 216
Query: 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365
+ ++ Q +S ++G + +++
Sbjct: 217 ----------------PTSTGQIVQTISKLGEKQNGGFVNYD 242
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 82.0 bits (202), Expect = 2e-18
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 5/144 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG S G+G + LA G + R+ + DL+S
Sbjct: 11 ALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSR 69
Query: 149 DSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
++ ++T L++LV NA + + + +T E + L + N + LS L
Sbjct: 70 SERQELMNTVANHFHGKLNILVNNAGIVIYKEAK-DYTVEDYSLIMSINFEAAYHLSVLA 128
Query: 208 LDDLKQSDYPSKRLIIVGSITGNT 231
LK S+ + + + S++G
Sbjct: 129 HPFLKASERGNV--VFISSVSGAL 150
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 81.5 bits (201), Expect = 3e-18
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG ++G+G A A+ A G I +A A A + + D++
Sbjct: 8 AVITGGANGIGRAIAERFAVEG-ADIAIADLV--PAPEAEAAIRNLGRRVLTVKCDVSQP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V F + D+LV NA +Y + T E ++ + N FL+++ +
Sbjct: 65 GDVEAFGKQVISTFGRCDILVNNAGIYPLIPFD-ELTFEQWKKTFEINVDSGFLMAKAFV 123
Query: 209 DDLKQSDY 216
+K++ +
Sbjct: 124 PGMKRNGW 131
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.8 bits (199), Expect = 6e-18
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 12/165 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLA 146
++TGA+ G+G A A+AL G + + + + + E + D+A
Sbjct: 6 ALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 64
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+R LD+LV NA V +E ++ N + + L
Sbjct: 65 DQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN---------WEKTLQINLVSVISGTYL 115
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
LD + + + +II S +A A+ + GF
Sbjct: 116 GLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFT 160
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.4 bits (198), Expect = 7e-18
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 3/131 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A + A G I R+ + T D +
Sbjct: 11 VLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLR 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ + G LD+L+ N +TAE F + TN + LS+L
Sbjct: 70 PEREKLMQTVSSMFGGKLDILINNLGAIRSKPTL-DYTAEDFSFHISTNLESAYHLSQLA 128
Query: 208 LDDLKQSDYPS 218
LK S +
Sbjct: 129 HPLLKASGCGN 139
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 79.5 bits (196), Expect = 1e-17
Identities = 36/166 (21%), Positives = 57/166 (34%), Gaps = 11/166 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A A+A A G + + E A G +DL
Sbjct: 8 VLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGKEVAEAIGG------AFFQVDLEDE 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+FV+ + +DVLV NAA+ P + T + + N LS L
Sbjct: 61 RERVRFVEEAAYALGRVDVLVNNAAIAAPGSAL-TVRLPEWRRVLEVNLTAPMHLSALA- 118
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
++ I+ + N A+ G L L
Sbjct: 119 --AREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSL 162
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 79.3 bits (195), Expect = 2e-17
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+T G+ +A L+E G + F + + A T L S
Sbjct: 3 AIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQKDELEAFAE------TYPQLKPMSE 55
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ ++ + +DVLV N + E + +V + F
Sbjct: 56 QEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 109
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 78.5 bits (193), Expect = 3e-17
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 5/165 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+GLA A E G +++ R E+AAKS G + D +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDE 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D + D ++ P+ LV NA + T + + N G F +RL +
Sbjct: 67 DGWTKLFDATEKAFGPVSTLVNNAGIA-VNKSVEETTTAEWRKLLAVNLDGVFFGTRLGI 125
Query: 209 DDLKQSDYPSKRLII--VGSITGNTNTLAGNVPPKANLGDLRGFA 251
+K + + + + G+ + A N A + A
Sbjct: 126 QRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAA 170
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 77.8 bits (191), Expect = 6e-17
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 4/158 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+G TAK G +++A ++ + G + + + +H D+
Sbjct: 9 AIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIG-SPDVISFVHCDVTKD 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLSRLL 207
+ VR VDT LD++ N V T E F+ + N G FL+++
Sbjct: 67 EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHA 126
Query: 208 LDDLKQSDYPSKRLII-VGSITGNTNTLAGNVPPKANL 244
+ + S + S T K +
Sbjct: 127 ARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAV 164
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 76.6 bits (188), Expect = 1e-16
Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 45/223 (20%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-S 147
VI A G+GL T++ L + + ++ R A A K N T D+
Sbjct: 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ ++ + + +D+L+ A + E ++ N G + +
Sbjct: 68 VAESKKLLKKIFDQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAI 118
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
LD + +I N S+
Sbjct: 119 LDFWDKRKGGPGGIIA----------------------------------NICSVTGFNA 144
Query: 268 FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
Y SK + + TG+ S+ PG T
Sbjct: 145 IHQVPVYSASKAAVVSFTNSL-AKLAPITGVTAYSINPGITRT 186
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 76.2 bits (187), Expect = 2e-16
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G + A A+ G + + R+ + E + AG+ E + D+
Sbjct: 7 VIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 65
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLL 203
++T +D+LV NA L T E ++ + N +
Sbjct: 66 TEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEM 124
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 75.8 bits (186), Expect = 4e-16
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 8/167 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG +SGLG A G + + + AER A+ +N + D+ SL
Sbjct: 8 VLITGGASGLGRALVDRFVAEG-AKVAVLDKS---AERLAELETDHGDNVLGIVGDVRSL 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLS 204
+ +Q +D L+ NA ++ + F+ N G+
Sbjct: 64 EDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAV 123
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
+ L L S I N A +G +R A
Sbjct: 124 KACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELA 170
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (183), Expect = 6e-16
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA G+G T +AL TG ++ R + + + +DL
Sbjct: 10 VLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDW 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
++ + + + P+D+LV NAAV L T E F+ S N +S+++
Sbjct: 65 EATERALGSV----GPVDLLVNNAAVALLQPFL-EVTKEAFDRSFEVNLRAVIQVSQIVA 119
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L P I+ S + + + + G L +
Sbjct: 120 RGLIARGVPGA--IVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVM 163
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.1 bits (179), Expect = 2e-15
Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 12/166 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G T KAL +G ++ R AK + +DL
Sbjct: 8 ALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDW 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D+ + + +D+LV NAA+ + T E F+ S N F +S+++
Sbjct: 63 DATEKALGGIGP----VDLLVNNAALVIMQPFL-EVTKEAFDRSFSVNLRSVFQVSQMVA 117
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
D+ P I+ S T + + G + +
Sbjct: 118 RDMINRGVPGS--IVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAM 161
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 73.5 bits (180), Expect = 2e-15
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG + GLG A+ G +++A + A+ G + HLD+
Sbjct: 8 VIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARELG---DAARYQHLDVTIE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ ++ V R +D LV NA + E E F V N G F+ + ++
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETES-VERFRKVVEINLTGVFIGMKTVI 122
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+K + ++ + S G
Sbjct: 123 PAMKDAGGG--SIVNISSAAG 141
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.4 bits (177), Expect = 3e-15
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++G + G+G + +A+ G ++ E A + +HLD+
Sbjct: 9 ALVSGGARGMGASHVRAMVAEG-AKVVFGDIL---DEEGKAMAAELADAARYVHLDVTQP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ VDT + L VLV NA + E + ++ + N G FL R
Sbjct: 65 AQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIE-DYALTEWQRILDVNLTGVFLGIR 120
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.1 bits (179), Expect = 4e-15
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLK------AERAAKSAGMAKENYTIMH 142
V++TGA GLG A A A AE G +++ + A K +
Sbjct: 10 VLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV 68
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ S+++ + V T + +DV+V NA + + + E +++ + G F
Sbjct: 69 ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRI-SDEDWDIIQRVHLRGSFQ 127
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
++R D +K+ +Y R+I+ S +G
Sbjct: 128 VTRAAWDHMKKQNYG--RIIMTASASG 152
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 72.0 bits (176), Expect = 6e-15
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 5/170 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLAS 147
+I+TG + G+GLA +A+A G ++ + R A + G D+++
Sbjct: 12 IIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN 70
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D V + + P+ L+ NA V + T E F N G F R +
Sbjct: 71 TDIVTKTIQQIDADLGPISGLIANAGVSVVKPAT-ELTHEDFAFVYDVNVFGVFNTCRAV 129
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGL 257
K I+V S + ++ + L
Sbjct: 130 AK--LWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNL 177
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 71.3 bits (174), Expect = 1e-14
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG S G+G A + LA G + R+ + + + N DL S
Sbjct: 9 ALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSR 67
Query: 149 DSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
+ + T L++LV NA V + + FT + + + +GTN +
Sbjct: 68 TERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAK-DFTEKDYNIIMGTNFEAAY 120
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 70.5 bits (172), Expect = 2e-14
Identities = 42/166 (25%), Positives = 60/166 (36%), Gaps = 4/166 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 146
V+ITG SGLG ATA LA G + + + L+A +AA D++
Sbjct: 7 VLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
V +V +D NA + +FTA F+ V N G FL
Sbjct: 66 DEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEK 125
Query: 207 LLDDLKQSDYPSKRLII-VGSITGNTNTLAGNVPPKANLGDLRGFA 251
+L +++ VG I G N +G R A
Sbjct: 126 VLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSA 171
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 69.8 bits (170), Expect = 3e-14
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 10/172 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWH------IIMACRDFLKAERAAKSAGMAKENYTIMH 142
++ITGA G+G A A A + H ++++ R E+ + +
Sbjct: 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 63
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D++ + VR+ +D LV NA V A T E F+ ++ TN G F
Sbjct: 64 ADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSD-LTEEDFDYTMNTNLKGTFF 122
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L++ L +++ I + T + + RG +
Sbjct: 123 LTQALFALMERQHSGHIFFI---TSVAATKAFRHSSIYCMSKFGQRGLVETM 171
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 69.8 bits (170), Expect = 3e-14
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ TGA G+G A L G ++ AE + D++
Sbjct: 9 ALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKP 68
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V D LD ++ N+ + + + T E F+ N G F +++ L
Sbjct: 69 SEVVALFDKAVSHFGGLDFVMSNSGMEVWCDEL-EVTQELFDKVFNLNTRGQFFVAQQGL 127
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
++ I +TG N A G R FA
Sbjct: 128 KHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFA 170
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 69.3 bits (169), Expect = 4e-14
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
++TG S GLG A+ LAE G +++A R+ +A AA+ D+++
Sbjct: 8 ALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN 66
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAV 174
+ V++ ++ + LD +V A +
Sbjct: 67 YEEVKKLLEAVKEKFGKLDTVVNAAGI 93
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 69.3 bits (169), Expect = 5e-14
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITGA +G+G A A G ++++ + A D+ S
Sbjct: 14 AIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE 72
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 181
+ D +D+LV NA P +
Sbjct: 73 QELSALADFAISKLGKVDILVNNAGGGGPKPFD 105
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.9 bits (168), Expect = 9e-14
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 7/149 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-----AGMAKENYTIMHL 143
I+TG ++G+G A K L E G ++++A R + + AA + +
Sbjct: 15 AIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQC 73
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
++ + + V V + + ++ LV N + E +++G+ + TN G F +
Sbjct: 74 NIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHI-SSKGWHAVLETNLTGTFYM 132
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTN 232
+ + + S IIV + G
Sbjct: 133 CKAVYSSWMKEHGGSIVNIIVPTKAGFPL 161
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 68.3 bits (166), Expect = 1e-13
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 140
KK ++TGA G+G A A L + G + + +A + A+ A A +
Sbjct: 1 KKV-----ALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVA 54
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 181
+ +D++ D V V+ R++ DV+V NA V T E
Sbjct: 55 VKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIE 95
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 67.1 bits (163), Expect = 2e-13
Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 27/223 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V++TGAS G+G A A +L + G +++ R AE +K D++
Sbjct: 4 VVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK 62
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V + T + +DV+V NA + T ++ + N G FL ++
Sbjct: 63 EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKK-SQWDEVIDLNLTGVFLCTQAA 121
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
+ + R+I + S+ G L G G N + + + G
Sbjct: 122 TKIMMKKRKG--RIINIASVVG-----------------LIGNIGQANYAAAKAGVIGFS 162
Query: 268 FDGAKAYKDSK-----VCNMLTMQEFHRRFHEETGIAFASLYP 305
A+ VC + + E+ P
Sbjct: 163 KTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP 205
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 67.0 bits (163), Expect = 2e-13
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGA+ G+G AT + A+ G ++ + AA++ G + +D+A
Sbjct: 8 VLITGAAHGIGRATLELFAKEG-ARLVACDIEEGPLREAAEAVG-----AHPVVMDVADP 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
SV + LD +V A E +EL + N G FL+++
Sbjct: 62 ASVERGFAEALAHLGRLDGVVHYAG-ITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAAS 120
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
+ +++ + S L GN +G R A
Sbjct: 121 EAMREKNPGSIVLTASRVYLGNLGQANYAASMAGVVGLTRTLA 163
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 66.3 bits (161), Expect = 4e-13
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+SG+GL A+ L + G + + R K A D+ S+
Sbjct: 5 ALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA 179
+ V P+DVLV NA A
Sbjct: 64 PEIEALVAAVVERYGPVDVLVNNAGRPGGGA 94
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 66.1 bits (160), Expect = 7e-13
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRD------FLKAERAAKSAGMAKENYTIMH 142
+ITG + +G + A L + G + +++ R L AE A AG A +
Sbjct: 4 AVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS 62
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT 178
L + LD +D R+ DVLV NA+ Y PT
Sbjct: 63 LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPT 98
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.5 bits (156), Expect = 2e-12
Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 19/151 (12%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 138
+ ++ V++ G LG +A W + + A
Sbjct: 1 EARR------VLVYGGRGALGSRCVQAFRARN-WWVAS-------IDVVENEEASASVIV 46
Query: 139 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHL 198
+ D V V + +D ++C A + + + +L +
Sbjct: 47 KMTDSFTEQADQVTAEVGKLLGDQK-VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIW 105
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ S L + L + G+
Sbjct: 106 TSTISSHL----ATKHLKEGGLLTLAGAKAA 132
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 64.4 bits (156), Expect = 2e-12
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG++ G+G A A+A G + +A + A A G + LD+
Sbjct: 8 ALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAEIG---PAACAIALDVTDQ 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
S+ + V +D+LV NAA++ A T E ++ N G
Sbjct: 64 ASIDRCVAELLDRWGSIDILVNNAALF-DLAPIVEITRESYDRLFAINVSGTLF 116
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.7 bits (154), Expect = 3e-12
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 11/176 (6%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAK--SAGMAKENYTIMHLD 144
++TGAS G G A A LA ++++ R + + A + D
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 145 LASLDSVRQFV----DTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHL 198
L + V++ + + R G +L+ NAA +K N
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLT 128
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L+ L+ + S SK ++ + S G A L
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNI-SSLCALQPYKGWGLYCAGKAARDMLYQVL 183
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 62.4 bits (151), Expect = 7e-12
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++TGA+SG+G A A G ++ R+ A++ + + D++
Sbjct: 8 ILVTGAASGIGRAALDLFAREG-ASLVAVDRE---ERLLAEAVAALEAEAIAVVADVSDP 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
+V L + A V
Sbjct: 64 KAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEA 102
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 63.0 bits (152), Expect = 7e-12
Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 36/206 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++I+G ++G+G AT K L G I+ AE A DL++
Sbjct: 4 IVISGCATGIGAATRKVLEAAG-HQIVGIDIR--DAEVIA---------------DLSTA 45
Query: 149 DSVRQ-FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ +Q D + + +D LV A + + V N+ G L
Sbjct: 46 EGRKQAIADVLAKCSKGMDGLVLCAGL--------GPQTKVLGNVVSVNYFGATELMDAF 97
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
L LK+ P+ +I + G + + G+
Sbjct: 98 LPALKKGHQPAAVVISSVAS---------AHLAFDKNPLALALEAGEEAKARAIVEHAGE 148
Query: 268 FDGAKAYKDSKVCNMLTMQEFHRRFH 293
G AY SK + +++ +
Sbjct: 149 QGGNLAYAGSKNALTVAVRKRAAAWG 174
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 62.5 bits (151), Expect = 1e-11
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA +GLATA LAE G I + + E+A S D+ S
Sbjct: 8 CLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSE 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
++V VD+ R +D L NA A + ++ F + N G F
Sbjct: 67 EAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF 119
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 61.7 bits (149), Expect = 2e-11
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLAS 147
V+ITG+S+GLG + A A +++ R +A + + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV 68
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
V V + + LDV++ NA + P + ++
Sbjct: 69 ESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSD 108
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (148), Expect = 3e-11
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 5/168 (2%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
V+ITG SSG+GL A LA + + RD R ++A +
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + R ++ A + + N +G + +
Sbjct: 65 DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L D+K+ S R+++ GS+ G L N A+ L G L
Sbjct: 125 FLPDMKRRG--SGRVLVTGSVGGLMG-LPFNDVYCASKFALEGLCESL 169
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 60.9 bits (147), Expect = 3e-11
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLAS 147
++TGA G+G A L G +I+ + AE + + + ++
Sbjct: 21 ALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV 79
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ + + + + LD++ N+ V + T E F+ N G F ++R
Sbjct: 80 VEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVK-DVTPEEFDRVFTINTRGQFFVAR 136
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (145), Expect = 4e-11
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 13/143 (9%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
G VI+ G LG A + + G + ++ A A S + N
Sbjct: 3 GKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLS---ANDQADSNILVDGNKN----WTE 54
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
S+ + + + + +D + C A + + + +L + + + ++
Sbjct: 55 QEQSILEQTASSLQGSQ-VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAK- 112
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
P L + G+
Sbjct: 113 ---LATTHLKPGGLLQLTGAAAA 132
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 5e-11
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 3/148 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 147
VI+TGAS G+G A LA+ G H+++ R ++ + + +
Sbjct: 17 VIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 75
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ QFV + LD+L+ N + S+ N L + +L+
Sbjct: 76 MTFAEQFVAQAGKLMGGLDMLILNHITN-TSLNLFHDDIHHVRKSMEVNFLSYVVLTVAA 134
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLA 235
L LKQS+ + + A
Sbjct: 135 LPMLKQSNGSIVVVSSLAGKVAYPMVAA 162
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 60.5 bits (146), Expect = 6e-11
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
ITG +GLG L+ G ++A R + A+ + + D+
Sbjct: 28 AFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD 86
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNA 172
D V+ V + ++++ NA
Sbjct: 87 PDMVQNTVSELIKVAGHPNIVINNA 111
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 60.0 bits (145), Expect = 7e-11
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G AK LA++ H+I R + + D++
Sbjct: 13 ALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK 71
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ + + ++ + +D+LV NA + + +E + TN F +++ +
Sbjct: 72 EEISEVINKILTEHKNVDILVNNAGIT-RDNLFLRMKNDEWEDVLRTNLNSLFYITQPIS 130
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+ + Y R+I + SI G
Sbjct: 131 KRMINNRYG--RIINISSIVG 149
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.4 bits (143), Expect = 8e-11
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+GLA A+ LA G + + R + + +D+
Sbjct: 10 VLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAPKGLFG-----------VEVDVTDS 57
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
D+V + P++VLV NA
Sbjct: 58 DAVDRAFTAVEEHQGPVEVLVSNA 81
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 59.4 bits (143), Expect = 1e-10
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ LA G +I A+ + G N + L++
Sbjct: 7 ALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQAISDYLG---ANGKGLMLNVTDP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+ ++ R +D+LV NA + E + + TN F LS+ ++
Sbjct: 63 ASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWND-IIETNLSSVFRLSKAVM 121
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+ + + R+I +GS+ G
Sbjct: 122 RAMMKKRHG--RIITIGSVVG 140
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 57.8 bits (139), Expect = 3e-10
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++ AS G+G A A L++ G + + R+ E K +G + + D
Sbjct: 7 VLVLAASRGIGRAVADVLSQEG-AEVTICARN----EELLKRSG-----HRYVVCD---- 52
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+R+ +D + +D+LV NA + E F+ ++ + L + R
Sbjct: 53 --LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTN-EDFKEAIDSLFLNMIKIVR 106
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 57.9 bits (139), Expect = 4e-10
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
++TG++SG+GL A ALA G ++ D + E+ A DL+
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK 66
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
++VR VD R +D+LV NA + E T +
Sbjct: 67 GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEK 106
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 57.2 bits (137), Expect = 5e-10
Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 12/171 (7%)
Query: 89 VIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
++ G ++ LG A A L E G + ++ + A K A
Sbjct: 11 ALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEAEKLAEALGGALLFRADV-T 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT---AEGFELSVGTNHLGHFLL 203
+ + + + LD LV A A E + + + L++ + +
Sbjct: 69 QDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAV 128
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+R L++ ++ + + L L
Sbjct: 129 ARRAEPLLREGGG----IVTLTYYASEK-VVPKYNVMAIAKAALEASVRYL 174
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 6e-10
Identities = 38/175 (21%), Positives = 60/175 (34%), Gaps = 7/175 (4%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V +ITG +SGLGLATA+ L G ++ E AK G
Sbjct: 4 KGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 62
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVC--NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ + A+ K T T E F+ + N +G F
Sbjct: 63 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN 122
Query: 203 LSRLLLDDLKQSDYPSKR---LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+ RL+ ++ Q++ +II + G A+ G + G +
Sbjct: 123 VIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPI 177
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (137), Expect = 6e-10
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+T A+ G+G A A A A G +I + K + K G+
Sbjct: 9 IILTAAAQGIGQAAALAFAREG-AKVIATDINESKLQELEKYPGIQTRVLD--------- 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ ++ +D F LDVL A + ++ S+ N +L+ + L
Sbjct: 59 VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFL 117
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+ + +I + S+ + + + G +
Sbjct: 118 PKMLAQKSGN--IINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSV 161
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 56.9 bits (136), Expect = 7e-10
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
G+V++TG + G+G A+ LA G H+++ R A+ A + +
Sbjct: 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTT 65
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 55.1 bits (131), Expect = 4e-09
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMA-------- 134
++TGA+ LG + A+ L G + + + + L A A+ A
Sbjct: 5 ALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 63
Query: 135 -----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF 189
+ + + V DVLV NA+ + PT +G
Sbjct: 64 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLL-RNDEDGH 122
Query: 190 ELSVGTNHLGHFLLSRLL 207
E VG + L
Sbjct: 123 EPCVGDREAMETATADLF 140
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 52.6 bits (125), Expect = 2e-08
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 13/172 (7%)
Query: 89 VIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
+++TG +S + A+A+ G + ++ R + A + + D+A
Sbjct: 8 ILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVA 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY----LPTAKEPTFTAEGFELSVGTNHLGHFL 202
S+ + D V + L T EGF+++ +
Sbjct: 66 EDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVA 125
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+++ L ++ S G + L +
Sbjct: 126 MAKACRSMLNPGSA-----LLTLSYLGAERAIPNYNVMGLAKASLEANVRYM 172
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 51.7 bits (123), Expect = 3e-08
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 19/147 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SGLG A A AL G + +++ E+ + D+
Sbjct: 4 ALVTGGASGLGRAAALALKARG-YRVVVLDLR------------REGEDLIYVEGDVTRE 50
Query: 149 DSVRQFVDTFRRSGRPLDVLVCN--AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ VR+ V + V+ KE E F + N LG F + RL
Sbjct: 51 EDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRL 110
Query: 207 LLDDLKQSDYPSK----RLIIVGSITG 229
++++ ++ ++ S+
Sbjct: 111 AAWAMRENPPDAEGQRGVIVNTASVAA 137
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 79 QGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
+GKK +I G ++ + A++ G + + E+ +
Sbjct: 4 KGKK------GLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLN-ESLEKRVRPIAQELN 55
Query: 137 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
+ + LD++ + + ++ ++ LD +V + A
Sbjct: 56 SPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPK 96
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 79 QGKKTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAK 135
GK+ ++++G S + A+ E G +++ D L+ +R
Sbjct: 5 DGKR------ILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQRITDRLPAKA 57
Query: 136 ENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175
+ + L S+ V +G LD +V +
Sbjct: 58 PLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFM 97
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129
V + G + LG A LA G I++ R KAE A
Sbjct: 3 VALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAA 42
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 79 QGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
+GK+ I G + G G A AK+LA G ++ L + G +
Sbjct: 7 RGKR------AFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQ 60
Query: 137 NYTIMHLDLASLDSVRQFVDTF 158
+ + L + V F
Sbjct: 61 SRVLPDGSLMEIKKVYPLDAVF 82
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 16/162 (9%), Positives = 41/162 (25%), Gaps = 15/162 (9%)
Query: 68 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127
TA+ V + +++ ++ + +G+ +A LA G ++ + A
Sbjct: 5 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 64
Query: 128 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
+ + A S + V + A+ L
Sbjct: 65 DSVNKRF--KVNVTAAETADDASRAEAVK-------GAHFVFTAGAIGL-----ELLPQA 110
Query: 188 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
++ + + L + + G
Sbjct: 111 AWQNESSIEIVADYNAQPPLGIGGIDA-TDKGKEYGGKRAFG 151
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 399 | |||
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 100.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 100.0 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.97 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.82 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.75 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.71 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.69 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.69 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.69 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.68 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.68 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.67 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.66 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.66 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.65 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.64 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.62 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.62 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.6 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.59 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.59 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.59 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.57 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.57 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.56 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.53 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.51 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.28 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.26 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.21 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.16 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.08 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.97 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.7 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.87 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.85 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.69 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.67 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.56 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.54 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.47 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.41 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.38 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.34 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.34 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.27 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.23 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.21 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.2 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.2 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.15 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.15 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.04 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.02 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.97 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.96 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.93 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.92 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.91 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.9 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.89 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.86 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.81 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.77 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.76 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.74 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.7 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.68 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.53 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.52 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.51 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.51 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.51 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.47 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.43 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.39 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.38 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.36 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.23 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.17 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.15 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.13 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.06 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.01 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.01 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.0 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.98 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.95 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.69 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.42 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.39 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.22 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.21 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.19 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.98 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.95 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.81 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.77 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.7 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 94.58 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.51 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 94.38 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.32 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.04 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 94.04 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 93.78 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 93.67 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.45 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.17 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.1 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.03 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 92.9 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.51 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.46 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.25 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 92.16 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 91.78 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.69 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 91.42 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 91.13 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.1 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.03 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 90.98 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 90.96 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 90.87 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.84 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 90.76 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 90.72 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.56 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.41 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 90.22 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 90.16 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 90.16 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 90.07 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 89.9 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.8 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 89.5 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.25 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.18 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 89.08 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 88.89 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 88.8 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.79 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.43 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 88.26 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 88.02 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 87.98 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 87.97 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 87.74 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 87.49 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 87.36 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 87.08 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 86.77 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 86.76 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 86.24 | |
| d2fr1a2 | 209 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 86.18 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 86.12 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 85.99 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 85.95 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 85.7 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 85.62 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 85.59 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 84.9 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 84.42 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 83.74 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 83.63 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 83.39 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 83.05 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 82.89 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 82.78 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 82.71 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 82.54 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 82.5 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 82.48 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.46 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 82.46 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 82.44 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 82.27 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 81.86 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 81.31 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 81.17 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 81.13 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 80.97 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 80.68 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 80.58 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 80.57 |
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-50 Score=367.69 Aligned_cols=246 Identities=20% Similarity=0.234 Sum_probs=216.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++. ..+.++.+++||++|+++++++++++.+
T Consensus 1 f~l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999996 99999999998888877764 3467899999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||+||||||+. ...++.+++.++|+++|++|+.|+++++|.++|+|++++ .|+||+++|..+..
T Consensus 80 ~~g~iDiLVnnAG~~-~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~i~S~~~~~--------- 147 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN-RRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVEE--------- 147 (251)
T ss_dssp HHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCC-CCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc--cccccccccchhcc---------
Confidence 999999999999986 567888999999999999999999999999999999876 58999999976642
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
.+.++...|++||+|+++|++.|+.|+ +++|||||+|+||+|+|++... ....
T Consensus 148 -------------------------~~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~i~T~~~~~-~~~~ 200 (251)
T d1vl8a_ 148 -------------------------VTMPNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEA-VFSD 200 (251)
T ss_dssp -------------------------CCSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHH-HHTC
T ss_pred -------------------------ccCccccchHHHHHhHHHHHHHHHHHh-cccCeEEEEEeeCcccCHHHHh-ccCC
Confidence 134667899999999999999999999 6779999999999999986532 2222
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 201 ~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 201 PEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 247 (251)
T ss_dssp HHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcC
Confidence 23344455677889999999999999999999999999999999995
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=1.8e-50 Score=366.92 Aligned_cols=244 Identities=17% Similarity=0.177 Sum_probs=217.1
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+.++||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.++++..+.++.++++|++|+++++++++++.+
T Consensus 5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 5 YYCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999996 999999999999999999988888999999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||+||||||+. ...++.+.+.++|++++++|+.++++++++++|+|++++ .|+||++||.++..
T Consensus 84 ~~g~iDilvnnag~~-~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~~--------- 151 (251)
T d2c07a1 84 EHKNVDILVNNAGIT-RDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLT--------- 151 (251)
T ss_dssp HCSCCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH---------
T ss_pred hcCCceeeeeccccc-cccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC--CeEEEEECCHHhcC---------
Confidence 999999999999986 456778899999999999999999999999999999876 58999999999875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++..+|++||+|+++|+|+|+.|+ +++|||||+|+||+|+|++.... .+
T Consensus 152 --------------------------~~~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~V~PG~v~T~~~~~~-~~- 202 (251)
T d2c07a1 152 --------------------------GNVGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDKI-SE- 202 (251)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC-----C-CH-
T ss_pred --------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCEeccccccc-CH-
Confidence 44678899999999999999999999 67799999999999999865432 22
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........|++|+.+|||+|++++||+++.+.++||+.|.+||.
T Consensus 203 -~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 203 -QIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp -HHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 2223344567889999999999999999999999999999999995
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-50 Score=368.18 Aligned_cols=243 Identities=17% Similarity=0.172 Sum_probs=218.5
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++..+.++.+++||++|+++++++++++.++
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999996 9999999999999999999888889999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+.. ..++ +++.++|++++++|+.|+++++|.++|+|++++ +|+||++||.++..
T Consensus 86 ~g~iDilvnnAG~~~-~~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Ii~isS~~~~~---------- 151 (255)
T d1fmca_ 86 LGKVDILVNNAGGGG-PKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAEN---------- 151 (255)
T ss_dssp HSSCCEEEECCCCCC-CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC----------
T ss_pred cCCCCEeeeCCcCCC-CCcc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc--ccccccccccchhc----------
Confidence 999999999999864 3455 789999999999999999999999999999886 58999999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++..+|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|+++.....+
T Consensus 152 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~-- 203 (255)
T d1fmca_ 152 -------------------------KNINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITP-- 203 (255)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCH--
T ss_pred -------------------------cccccccchhHHHHHHHHHHHHHHHh-CccCeEEEEeeeCcCcChHhhccCCH--
Confidence 45678899999999999999999999 67899999999999999865443322
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........|++|+.+|||+|++++||+++.+.++||+.|.+||.
T Consensus 204 e~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG 249 (255)
T d1fmca_ 204 EIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_dssp HHHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 2233445567889999999999999999999999999999999995
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=2.6e-50 Score=367.59 Aligned_cols=247 Identities=17% Similarity=0.169 Sum_probs=220.1
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++...+.++.+++||++|+++++++++++.+
T Consensus 3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 3 RWNLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999996 999999999999999999988888999999999999999999999998
Q ss_pred cCC-CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SGR-PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~g-~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+++ ++|+||||||+. ...++.+++.++|+++|++|+.|++++++.++|+|++++ .|+||++||.++..
T Consensus 82 ~~~~~idilvnnAG~~-~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~-------- 150 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIV-IYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGAL-------- 150 (259)
T ss_dssp HTTTCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGTS--------
T ss_pred HhCCCceEEEECCcee-ccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc--cccccccccccccc--------
Confidence 876 899999999986 456788999999999999999999999999999999876 58999999998874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc-
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI- 318 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~- 318 (399)
+.++...|++||+|+++|+|+|+.|+ +++|||||+|+||+|+|++......
T Consensus 151 ---------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~ 202 (259)
T d2ae2a_ 151 ---------------------------AVPYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQD 202 (259)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTTS
T ss_pred ---------------------------ccccccchHHHHHHHHHHHHHHHHHh-CcCceEEEEeeeCcccCHHHHhhhhc
Confidence 45678899999999999999999999 6779999999999999986432111
Q ss_pred -hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.....+.....+.|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 203 ~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 203 PEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 252 (259)
T ss_dssp HHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 1122333455667889999999999999999999999999999999985
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=1.5e-50 Score=369.56 Aligned_cols=245 Identities=20% Similarity=0.186 Sum_probs=218.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.++++..+.++.++.||++|+++++++++++.+++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999996 99999999999999999998888899999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||+.....++.+++.++|+++|++|+.++++++++++|+|.+++ .|+||++||.++..
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~~----------- 147 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGVK----------- 147 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHS-----------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc--CCCCCeeechhhcc-----------
Confidence 99999999999876667788999999999999999999999999999998876 58999999999874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch---
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--- 319 (399)
+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|+++......
T Consensus 148 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~ 202 (260)
T d1zema1 148 ------------------------GPPNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQA 202 (260)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHHH
T ss_pred ------------------------CCcchHHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEeccCcccCcchhhcchhhhh
Confidence 45678899999999999999999999 67799999999999999865321111
Q ss_pred ----------hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 320 ----------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 320 ----------~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
............|++|+.+|+|+|+.++||+++.+.++||+.|.+||
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 259 (260)
T d1zema1 203 KVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 259 (260)
T ss_dssp HHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred hhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEeCC
Confidence 01112233456688999999999999999999999999999999998
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=1.8e-50 Score=368.21 Aligned_cols=246 Identities=20% Similarity=0.170 Sum_probs=215.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++.. .+.++.+++||++|+++++++++++.+
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999996 999999999988888777643 356789999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+||+||||||+..+..++.+++.++|+++|++|+.|+|+++|+++|.|++++ .|+||++||.++..
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~--------- 148 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGIR--------- 148 (258)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS---------
T ss_pred HhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc--CCCCcccccHhhcc---------
Confidence 9999999999999876667788999999999999999999999999999999876 58999999999874
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch-
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~- 319 (399)
+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|++.......
T Consensus 149 --------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~i~PG~v~T~~~~~~~~~~ 201 (258)
T d1iy8a_ 149 --------------------------GIGNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQL 201 (258)
T ss_dssp --------------------------BCSSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHHH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCceEEEEeeCcccCHHHHHHHhhc
Confidence 45778999999999999999999999 67799999999999999865322111
Q ss_pred ----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 ----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............|++|+.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG 253 (258)
T d1iy8a_ 202 DPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGG 253 (258)
T ss_dssp CTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CcccHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcc
Confidence 111222334456789999999999999999999999999999999995
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.7e-50 Score=366.40 Aligned_cols=245 Identities=18% Similarity=0.164 Sum_probs=194.3
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++...+.++.++.||++++++++++++++.+
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999996 999999999999999999887778999999999999999999999999
Q ss_pred cC-CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++ |++|+||||||+. ...++.+++.++|+++|++|+.|+++++|+++|+|++++ .|+||++||..+..
T Consensus 82 ~~~g~idilvnnAG~~-~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~-------- 150 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAI-RSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV-------- 150 (259)
T ss_dssp HHTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC--------------
T ss_pred HhCCCccccccccccc-CCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc--cccccccccccccc--------
Confidence 87 7899999999997 456788999999999999999999999999999999876 58999999999874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.++...|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++......+
T Consensus 151 ---------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~V~PG~i~T~~~~~~~~~ 202 (259)
T d1xq1a_ 151 ---------------------------SASVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDD 202 (259)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC----------
T ss_pred ---------------------------cccccccccccccchhhhhHHHHHHh-cccCeEEEEeccCcccCHHhhhhchH
Confidence 34567789999999999999999999 67799999999999999965432222
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 203 --~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG 248 (259)
T d1xq1a_ 203 --EFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGG 248 (259)
T ss_dssp -----------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred --HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCC
Confidence 2223345577889999999999999999999999999999999995
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=6.7e-50 Score=364.92 Aligned_cols=248 Identities=18% Similarity=0.141 Sum_probs=217.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh-HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+. +.++.+.++++..+.++.+++||++|+++++++++++.++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999996 999999975 4677788888877889999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|++++. +++||++||.++..
T Consensus 83 ~G~iDiLVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~~Iv~isS~~~~~---------- 150 (261)
T d1geea_ 83 FGKLDVMINNAGLEN-PVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEKI---------- 150 (261)
T ss_dssp HSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTS----------
T ss_pred hCCCCEeeccceecC-CcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccc-cccccccccchhcc----------
Confidence 999999999999974 467889999999999999999999999999999988763 35699999998874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++..+|++||+|+++|+++|+.|+ +++|||||+|+||+|+|++..... ...
T Consensus 151 -------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~-~~~ 203 (261)
T d1geea_ 151 -------------------------PWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKF-ADP 203 (261)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHHHH-HSH
T ss_pred -------------------------cCccccccccCCccchhhHHHHHHHh-hhhCcEEEEEeeCcCcCHhHhhhc-CCH
Confidence 45778899999999999999999999 677999999999999998553321 112
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 370 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~ 370 (399)
..........|++|+.+|||+|++++||+++.+.++||+.|.+||....
T Consensus 204 ~~~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~sl 252 (261)
T d1geea_ 204 EQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTL 252 (261)
T ss_dssp HHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCeeC
Confidence 2223344456789999999999999999999999999999999996543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-50 Score=362.65 Aligned_cols=239 Identities=21% Similarity=0.232 Sum_probs=213.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.+++. .++..+.||++|+++++++++++.+++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 57899999999999999999999999996 99999999999998888773 567889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||.. ...++.+++.++|+++|++|+.|+++++|+++|+|++++ .|+||++||.++..
T Consensus 77 g~iDilVnnAg~~-~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~~----------- 142 (243)
T d1q7ba_ 77 GEVDILVNNAGIT-RDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR--HGRIITIGSVVGTM----------- 142 (243)
T ss_dssp CSCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH-----------
T ss_pred CCcceehhhhhhc-cccccccccccccccccceeechhhhhHHHHHHHHHHcC--CCEeeeecchhhcC-----------
Confidence 9999999999986 556788999999999999999999999999999999876 58999999999875
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++..+|++||+|+++|+++++.|+ +++|||||+|+||+|+|++.... .+ .
T Consensus 143 ------------------------~~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~-~~--~ 194 (243)
T d1q7ba_ 143 ------------------------GNGGQANYAAAKAGLIGFSKSLAREV-ASRGITVNVVAPGFIETDMTRAL-SD--D 194 (243)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTS-CH--H
T ss_pred ------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecceEechhhhhh-hh--h
Confidence 44678899999999999999999999 67799999999999999854332 22 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......+.|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 195 ~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG 239 (243)
T d1q7ba_ 195 QRAGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGG 239 (243)
T ss_dssp HHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 222344566789999999999999999999999999999999984
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.2e-49 Score=359.23 Aligned_cols=234 Identities=18% Similarity=0.198 Sum_probs=211.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++. .++.+++||++|+++++++++++.+++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999996 99999999999888888774 578899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++|+||||||+. ...++.+++.++|+++|++|+.|+|+++|.++|.|++++ .|+||++||.++..
T Consensus 79 g~idilinnAG~~-~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~----------- 144 (244)
T d1nffa_ 79 GGLHVLVNNAGIL-NIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGLA----------- 144 (244)
T ss_dssp SCCCEEEECCCCC-CCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCCeEEEECCccc-CCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC--cceEEecccccccc-----------
Confidence 9999999999986 557888999999999999999999999999999999876 58999999999874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+|+++|++.++.|+ +++|||||+|+||+|+|++... .
T Consensus 145 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~-~----- 193 (244)
T d1nffa_ 145 ------------------------GTVACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTDW-V----- 193 (244)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGTT-S-----
T ss_pred ------------------------ccccccchhhHHHHHHHHHHHHHHHh-cccCEEEEEEeeCCccChhHhh-h-----
Confidence 45678899999999999999999999 6779999999999999985422 1
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+...+.|++|+.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 194 --~~~~~~~pl~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG 236 (244)
T d1nffa_ 194 --PEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 236 (244)
T ss_dssp --CTTCSCCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --hHHHHhccccCCCCHHHHHHHHHHHhChhhCCCcCCEEEECCC
Confidence 1223345778999999999999999999999999999999985
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=1.8e-49 Score=360.36 Aligned_cols=244 Identities=20% Similarity=0.210 Sum_probs=215.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++.. +.++.+++||++|+++++++++++.+++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999996 999999999999998888864 4579999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||+. ...++.+++.++|+++|++|+.|+|+++++++|+|++++. +|+||++||.++..
T Consensus 81 G~iDiLVnnAg~~-~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~-gg~Ii~isS~~~~~----------- 147 (251)
T d1zk4a1 81 GPVSTLVNNAGIA-VNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGFV----------- 147 (251)
T ss_dssp SSCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGTS-----------
T ss_pred CCceEEEeccccc-cccchhcccccchhhhccccccccchhHHHHHHHHHhcCC-CCceEeeeccceec-----------
Confidence 9999999999997 4578889999999999999999999999999999998763 46999999999874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCccccchhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|+.+|++.++.|+. .++|||||+|+||+|+|++......+
T Consensus 148 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~-- 201 (251)
T d1zk4a1 148 ------------------------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGA-- 201 (251)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTH--
T ss_pred ------------------------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCH--
Confidence 446788999999999999999999852 57799999999999999855332211
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+.|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 202 ~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 202 EEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp HHHHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence 2222334456889999999999999999999999999999999995
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=8.6e-50 Score=361.62 Aligned_cols=242 Identities=19% Similarity=0.184 Sum_probs=200.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+..+ +..+.++..+.++.+++||++|+++++++++++.+++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999996 99999997643 2223344457789999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||+. ...++.+++.++|+++|++|+.|+++++|+++|+|++++ .|+||++||.++..
T Consensus 79 G~iDilVnnAG~~-~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~----------- 144 (247)
T d2ew8a1 79 GRCDILVNNAGIY-PLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYWL----------- 144 (247)
T ss_dssp SCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCCCC-CCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC--CCCccccccchhcc-----------
Confidence 9999999999996 567888999999999999999999999999999999876 58999999999874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++...|++||+|+.+|+++|+.|+ ++.|||||+|+||+|+|++..........
T Consensus 145 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 199 (247)
T d2ew8a1 145 ------------------------KIEAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAMF 199 (247)
T ss_dssp ------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC--------------
T ss_pred ------------------------cCcccccchhhhccHHHHHHHHHHHh-cccCeEEEEEeeCCCCCccccccccchhH
Confidence 45678899999999999999999999 67799999999999999965433222111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ......+.+|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 200 ~~-~~~~~~~l~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 200 DV-LPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp -----CTTSSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred HH-HHHHhccCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 10 011123567899999999999999999999999999999995
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=4.5e-50 Score=366.11 Aligned_cols=243 Identities=19% Similarity=0.190 Sum_probs=214.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.++++..+.++.+++||++|+++++++++++.+++|+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 389999999999999999999999996 9999999999999999999888889999999999999999999999999999
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHH--hhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL--KQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l--~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
||+||||||+. ...++.+++.++|+++|++|+.|+++++|+++|+| .+++ .|+||++||..+..
T Consensus 80 iDilVnnAG~~-~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~--~g~Ii~i~S~~~~~----------- 145 (257)
T d2rhca1 80 VDVLVNNAGRP-GGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG--TGRIVNIASTGGKQ----------- 145 (257)
T ss_dssp CSEEEECCCCC-CCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHT--EEEEEEECCGGGTS-----------
T ss_pred CCEEEeccccc-CCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcC--Cccccccccccccc-----------
Confidence 99999999987 45678899999999999999999999999999974 4443 58999999999875
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc----
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 318 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~---- 318 (399)
+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|+|......
T Consensus 146 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 200 (257)
T d2rhca1 146 ------------------------GVVHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHYSD 200 (257)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECSBCSHHHHHHHHHHHH
T ss_pred ------------------------ccccchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCHHHHHHHhhhhh
Confidence 45778899999999999999999999 6779999999999999986432110
Q ss_pred ----hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 ----PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ----~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............|++|+.+|+|+|+.++||+|+.+.++||+.|.+||.
T Consensus 201 ~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 201 IWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 253 (257)
T ss_dssp HTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 1112223344567889999999999999999999999999999999985
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=2.1e-49 Score=361.14 Aligned_cols=244 Identities=16% Similarity=0.131 Sum_probs=213.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++ +.++.+++||++|+++++++++++.++
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 9999999999988888877 467899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ...++.+++.++|++++++|+.|+++++|+++|.|.+++. +|+||++||.++..
T Consensus 77 ~g~iDilVnnAg~~-~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~-~g~Iv~isS~~~~~---------- 144 (256)
T d1k2wa_ 77 WGSIDILVNNAALF-DLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGR-GGKIINMASQAGRR---------- 144 (256)
T ss_dssp HSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS----------
T ss_pred hCCccEEEeecccc-cccccccCCHHHHHhhhceeeeccccchhhccchhHHhcc-CCccccccchhhcc----------
Confidence 99999999999987 4567889999999999999999999999999998766542 58999999999874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch--
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 319 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-- 319 (399)
+.++...|++||+|+.+|++.++.|+ +++|||||+|+||+|+|+++......
T Consensus 145 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~i~T~~~~~~~~~~~ 198 (256)
T d1k2wa_ 145 -------------------------GEALVGVYCATKAAVISLTQSAGLNL-IRHGINVNAIAPGVVDGEHWDGVDAKFA 198 (256)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTHHHHHHHHH
T ss_pred -------------------------ccccccchhhhhhHHHHHHHHHHHHh-cccCeEEEEEecCCCCchhhhhhhhhhh
Confidence 45778899999999999999999999 67799999999999999965321111
Q ss_pred ------hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 ------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ------~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............|++|+.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 199 ~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG 252 (256)
T d1k2wa_ 199 DYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGG 252 (256)
T ss_dssp HHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred hhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEECcc
Confidence 111222344567889999999999999999999999999999999995
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.8e-49 Score=362.64 Aligned_cols=244 Identities=22% Similarity=0.223 Sum_probs=208.2
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhcc-CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|+||++|||||++|||+++|+.|+++|+ +|++++|+ .+.++++.+++.. .+.++.+++||++|+++++++++++.++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999996 99999987 4566777666643 4678999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ...++.+++.++|+++|++|+.|+++++|+++|+|++++ .|+||++||.++..
T Consensus 81 ~G~iDiLVnnAG~~-~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~---------- 147 (260)
T d1x1ta1 81 MGRIDILVNNAGIQ-HTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGLV---------- 147 (260)
T ss_dssp HSCCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred hCCCcEEEeecccc-cCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC--CceEeeccccccee----------
Confidence 99999999999997 456888999999999999999999999999999999876 58999999999875
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~- 320 (399)
+.++..+|++||+|+++|++.|+.|+ +++|||||+|+||+|+|++........
T Consensus 148 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~ 201 (260)
T d1x1ta1 148 -------------------------ASANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQISALA 201 (260)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC-----------
T ss_pred -------------------------ccCCcchhhhhhhhHHHhHHHHHHHh-chhCcEEEEEecCCCCChhhhhhhhhhh
Confidence 45678899999999999999999999 678999999999999999654322111
Q ss_pred --------hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 --------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 --------~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........|++|+.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 202 EKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp -------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence 01112234567889999999999999999999999999999999995
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-49 Score=360.06 Aligned_cols=240 Identities=19% Similarity=0.200 Sum_probs=210.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.+++ .++.++.||++|+++++++++++.+++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc----CCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999996 9999999998888877765 357889999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||+.....++++++.++|+++|++|+.|+++++|+++|+|++++ |+||++||.++..
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---G~Ii~isS~~~~~----------- 143 (250)
T d1ydea1 78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ---GNVINISSLVGAI----------- 143 (250)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCHHHHH-----------
T ss_pred CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC---CCCcccccccccc-----------
Confidence 99999999999875566777899999999999999999999999999998753 8999999999875
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc---cch
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE---HIP 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~---~~~ 319 (399)
+.++...|++||+|+++|+++|+.|+ +++|||||+|+||+|+|+++... ...
T Consensus 144 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 198 (250)
T d1ydea1 144 ------------------------GQAQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPD 198 (250)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSS
T ss_pred ------------------------cccCcchhHHHHhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHHhhcCCC
Confidence 44678899999999999999999999 67799999999999999854321 111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
....+.......|++|+.+|||+|++++||+++ +.++||+.|.+||.
T Consensus 199 ~~~~~~~~~~~~pl~R~g~p~eva~~v~fL~Sd-a~~itG~~i~vDGG 245 (250)
T d1ydea1 199 PRASIREGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIELLVTGG 245 (250)
T ss_dssp HHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH-CTTCCSCEEEESTT
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cCCCcCCeEEECCC
Confidence 223334445566889999999999999999986 67899999999985
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=2.6e-49 Score=360.49 Aligned_cols=242 Identities=19% Similarity=0.157 Sum_probs=213.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++...+.++.+++||++|+++++++++++.+++|+||
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 6899999999999999999999996 999999999999999999988888999999999999999999999999999999
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccc
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (399)
+||||||+. ...++.+++.++|+++|++|+.|+++++|+++|+|.+++. +++||++||.++..
T Consensus 81 ilVnnAG~~-~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~~--------------- 143 (255)
T d1gega_ 81 VIVNNAGVA-PSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGHV--------------- 143 (255)
T ss_dssp EEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS---------------
T ss_pred EEEeccccc-ccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcc-ccccccccchhhcc---------------
Confidence 999999986 5578889999999999999999999999999998877653 57899999998874
Q ss_pred cccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh------
Q 015844 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL------ 320 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~------ 320 (399)
+.++...|++||+|+.+|++.|+.|+ ++.|||||+|+||+|+|+++.......
T Consensus 144 --------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~ 202 (255)
T d1gega_ 144 --------------------GNPELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAGK 202 (255)
T ss_dssp --------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTC
T ss_pred --------------------cCcccccchhCHHHHHhhHHHHHHHh-hhhCcEEEEEecCcccChHHhhhhhhhHhhhcc
Confidence 45788899999999999999999999 677999999999999998543211110
Q ss_pred --hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 --FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 --~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...........|++|+.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 203 ~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG 251 (255)
T d1gega_ 203 PLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGG 251 (255)
T ss_dssp CTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cchhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCcEEEecCC
Confidence 11122234456789999999999999999999999999999999995
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.4e-49 Score=354.21 Aligned_cols=237 Identities=19% Similarity=0.159 Sum_probs=207.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|+|+||++|||||++|||+++|+.|+++|+ +|++++|+++++++..+++ +..+++||++|+++++++++++.++
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999996 9999999998888877765 3568899999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ...++.+++.++|+++|++|+.|+++++|+++|+|++++ .++|+++||.. ..
T Consensus 75 ~g~iDilVnnAG~~-~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~~~i~~~ss~~-~~---------- 140 (242)
T d1ulsa_ 75 LGRLDGVVHYAGIT-RDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTASRV-YL---------- 140 (242)
T ss_dssp HSSCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CEEEEEECCGG-GG----------
T ss_pred cCCceEEEECCccc-ccCchhhCcchhhhccccccchhhhhhhhhccccccccc--cceeeeecccc-cc----------
Confidence 99999999999997 457788999999999999999999999999999999876 46777777643 32
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++..+|++||+|+++|++.|+.|+ +++|||||+|+||+|+|++... ..+
T Consensus 141 -------------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~-~~~-- 191 (242)
T d1ulsa_ 141 -------------------------GNLGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAK-VPE-- 191 (242)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSS-SCH--
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCcccChhhhc-CCH--
Confidence 34677899999999999999999999 6779999999999999986543 222
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 192 ~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 237 (242)
T d1ulsa_ 192 KVREKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGG 237 (242)
T ss_dssp HHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhchhhCCCCCcEEEECCC
Confidence 2223455667889999999999999999999999999999999985
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=3.4e-49 Score=358.37 Aligned_cols=239 Identities=20% Similarity=0.164 Sum_probs=212.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++ +.++.+++||++|+++++++++++.+++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999996 9999999998888777765 4678999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||+. ...++.+.+.++|+++|++|+.|+++++|+++|+|++++ .|+||++||.++..
T Consensus 78 g~iDilVnnAg~~-~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~--~G~II~isS~~~~~----------- 143 (254)
T d1hdca_ 78 GSVDGLVNNAGIS-TGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGLM----------- 143 (254)
T ss_dssp SCCCEEEECCCCC-CCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCccEEEecCccc-cccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC--CCeecccccchhcc-----------
Confidence 9999999999996 557788999999999999999999999999999999876 58999999999874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.++..+|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|++.......
T Consensus 144 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~v~T~~~~~~~~~--- 195 (254)
T d1hdca_ 144 ------------------------GLALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAETGIR--- 195 (254)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHTCC---
T ss_pred ------------------------cccchhhHHHHHHHHHHHHHHHHHHh-CCCceEEEEeeeCcccCccchhcCHH---
Confidence 45678899999999999999999999 67799999999999999865332211
Q ss_pred hhchhhHHHHhcCCC-ChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYV-SEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~-~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......+.|++|+. .|||+|+.++||+++.+.++||+.|.+||.
T Consensus 196 ~~~~~~~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG 241 (254)
T d1hdca_ 196 QGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGG 241 (254)
T ss_dssp CSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCCC
Confidence 222334456788887 699999999999999999999999999995
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-48 Score=353.90 Aligned_cols=239 Identities=19% Similarity=0.187 Sum_probs=205.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+++..+ ..+++ ...+++||++|+++++++++++.+++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~-~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKE-VAEAI-----GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHH-HHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH-HHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999996 9999999976543 44443 24578999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|+||+||||||+. ...++.+++.++|+++|++|+.|+|+++|+++|+|++++ .|+||++||.++..
T Consensus 75 G~iDiLVnnAG~~-~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Ii~isS~~~~~----------- 140 (248)
T d2d1ya1 75 GRVDVLVNNAAIA-APGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGLF----------- 140 (248)
T ss_dssp SCCCEEEECCCCC-CCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCGGGTS-----------
T ss_pred CCCCeEEEeCcCC-CCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc--cccccccccccccc-----------
Confidence 9999999999997 456788999999999999999999999999999999876 58999999999875
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc--hh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--PL 320 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~--~~ 320 (399)
+.++...|++||+|+++|++.|+.|+ +++|||||+|+||+|+|+++..... +.
T Consensus 141 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~ 195 (248)
T d2d1ya1 141 ------------------------AEQENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSPD 195 (248)
T ss_dssp ------------------------BCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC----
T ss_pred ------------------------cccccchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCchHHHHhhcCCC
Confidence 45678899999999999999999999 6779999999999999986533211 11
Q ss_pred h-hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 321 F-RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 321 ~-~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ..........|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 196 ~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 243 (248)
T d2d1ya1 196 PERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG 243 (248)
T ss_dssp ----CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcC
Confidence 1 1122233456788999999999999999999999999999999995
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=6.8e-49 Score=354.86 Aligned_cols=238 Identities=18% Similarity=0.163 Sum_probs=210.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++|||||++|||+++|+.|+++|+ +|++. .|+.+.++++.++++..+.++.+++||++|+++++++++++.+++|+|
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999996 77775 677788888888887778899999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+||||||.. ...++.+++.++|+++|++|+.|+++++|+++|+|++++ .|+||++||.++..
T Consensus 81 DiLVnnAg~~-~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~~-------------- 143 (244)
T d1edoa_ 81 DVVVNNAGIT-RDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGLI-------------- 143 (244)
T ss_dssp SEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH--------------
T ss_pred Cccccccccc-cccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC--CcEEEEEcChhhcC--------------
Confidence 9999999987 556888999999999999999999999999999999876 58999999999875
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|++... ..+ ....
T Consensus 144 ---------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrvN~I~PG~i~T~~~~~-~~~--~~~~ 198 (244)
T d1edoa_ 144 ---------------------GNIGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAK-LGE--DMEK 198 (244)
T ss_dssp ---------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHT-TCH--HHHH
T ss_pred ---------------------CCCCCHHHHHHHHHHHHChHHHHHHH-hhhCcEEEEEecceeccHHHHH-hhH--HHHH
Confidence 44678899999999999999999999 6789999999999999985433 222 1222
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCCCCCCCceEEccCCC
Q 015844 326 PPFQKYITKGYVSEDEAGKRLAQVV-SDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 326 ~~~~~~~~~~~~~pee~a~~v~~l~-~~~~~~~~G~~~~~dg~ 367 (399)
......|++|+.+|+|+|+.++||+ ++.+.++||+.+.+||.
T Consensus 199 ~~~~~~pl~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG 241 (244)
T d1edoa_ 199 KILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp HHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCC
Confidence 3344567899999999999999997 78888999999999984
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-48 Score=357.27 Aligned_cols=274 Identities=16% Similarity=0.199 Sum_probs=230.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-----CCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++.. .+.++.+++||++|++++++++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 68999999999999999999999999996 999999999988888877742 356899999999999999999999
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+.+.+|+||+||||||+. ...++.+++.++|++++++|+.|+++++++++|.|.+++ .|+||++||....
T Consensus 88 ~~~~~G~iDiLVnnAg~~-~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~Ii~~ss~~~~------- 157 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQ-FLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPTKA------- 157 (297)
T ss_dssp HHHHHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCCTT-------
T ss_pred HHHHhCCeEEEEeecccc-ccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc--ccccccccccccc-------
Confidence 999999999999999986 456788999999999999999999999999999999876 5789988664322
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|+.+|++.+|.|+ +++|||||+|+||+|+|++.....
T Consensus 158 -----------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~ 207 (297)
T d1yxma1 158 -----------------------------GFPLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQTAVENY 207 (297)
T ss_dssp -----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTGGGTTS
T ss_pred -----------------------------cccccccchhHHHHHHHHHHHHHHHh-cccCceEEEeeeCcCcCcchhhhc
Confidence 34677899999999999999999999 677999999999999999654433
Q ss_pred chhh-hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccc--------cccCcccCCHHHHHHH
Q 015844 318 IPLF-RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE--------NQLSQEASDVEKARKV 388 (399)
Q Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~--------~~~~~~~~~~~~~~~l 388 (399)
.... ........+.|++|+.+|||+|+.++||+++.+.++||+.|.+||....+. ........+.+..+++
T Consensus 208 ~~~~~~~~~~~~~~~plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (297)
T d1yxma1 208 GSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSLYTHSYEVPDHDNWPKGAGDLSVVKKM 287 (297)
T ss_dssp GGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCBTTCCCCCCSCCCCCSSCCHHHHHH
T ss_pred cccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChhhhcCCCCCCCcccccccCCchHHHHHH
Confidence 2222 233445566788999999999999999999999999999999999643321 1122334566777889
Q ss_pred HHHHHHHhc
Q 015844 389 WEISEKLVG 397 (399)
Q Consensus 389 w~~~~~~~~ 397 (399)
|+..++..+
T Consensus 288 ~~~~~~~~~ 296 (297)
T d1yxma1 288 KETFKEKAK 296 (297)
T ss_dssp HHHHHHHHH
T ss_pred hHhhHHhcc
Confidence 988777654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=8.8e-48 Score=352.99 Aligned_cols=246 Identities=19% Similarity=0.212 Sum_probs=210.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++... ..+.++.||++|+++++++++++.+++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCC-CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999996 9999999999999999988654 457889999999999999999999999
Q ss_pred CCccEEEecCcccCCC-CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 163 g~id~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
|++|+||||||+.... ..+.+++.++|+++|++|+.|+++++|+++|+|++++ .|+||++||.++..+.
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~ii~iss~~~~~~~-------- 150 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSFTAG-------- 150 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGTCCC--------
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC--CCCccccccccccccc--------
Confidence 9999999999986432 3467889999999999999999999999999999876 5899999999887421
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
.+....|++||+|+++|++.|+.|| +++|||||+|+||+|+|+++........
T Consensus 151 --------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~ 203 (268)
T d2bgka1 151 --------------------------EGVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGVDS 203 (268)
T ss_dssp --------------------------TTSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTSSSCCH
T ss_pred --------------------------cccccccchhHHHHHhCHHHHHHHh-ChhCeEEEecCCCCccChHHhhhhcCCH
Confidence 2234579999999999999999999 6779999999999999996644322211
Q ss_pred hhhchhhH--HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~--~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........ ..+.+|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 204 ~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG 251 (268)
T d2bgka1 204 SRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGG 251 (268)
T ss_dssp HHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhccccCCCCcCHHHHHHHHHHHhChhhCCccCceEEECcC
Confidence 21111111 12457899999999999999999999999999999995
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=1.2e-47 Score=349.61 Aligned_cols=247 Identities=20% Similarity=0.181 Sum_probs=216.4
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++...+.+++++.||+++.++++++++++.+
T Consensus 1 ~f~L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 1 RWSLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999996 999999999999999999988888999999999999999999999999
Q ss_pred cC-CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 161 SG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 161 ~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
++ +++|+||||||.. ...++.+++.++|++++++|+.++++++++++|.|.++. .|+||++||..+..
T Consensus 80 ~~~g~idilinnag~~-~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~--~g~ii~isS~~~~~-------- 148 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVV-IHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGFS-------- 148 (258)
T ss_dssp HTTSCCCEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGTS--------
T ss_pred HhCCCcEEEecccccc-ccCccccCCHHHHhhhhhhcccccccccccccccccccc--cccccccccccccc--------
Confidence 98 6899999999997 456888999999999999999999999999999999886 68999999999874
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
+.+....|+++|+|+++|++.+++|+ ++.|||||+|+||+|+|++..+....
T Consensus 149 ---------------------------~~~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~ 200 (258)
T d1ae1a_ 149 ---------------------------ALPSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKK 200 (258)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC----------
T ss_pred ---------------------------ccccchhHHHHHHHHHHHHHHHHHhc-CcCcEEEEEEeeCcccCcchhhhhhh
Confidence 45778899999999999999999999 67799999999999999865432211
Q ss_pred ---hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 ---LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ---~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........+.|++|+.+|+|+|+.++||+++.+.++||+.|.+||.
T Consensus 201 ~~~~~~~~~~~~~~~plgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 201 NPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 251 (258)
T ss_dssp ---CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCC
Confidence 123334455677889999999999999999999999999999999995
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.8e-48 Score=350.32 Aligned_cols=232 Identities=22% Similarity=0.267 Sum_probs=198.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.++||++|||||++|||+++|+.|+++|+ +|++++|+.+. ..++..++||++|+++++++++++.++
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 70 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGA-----------PKGLFGVEVDVTDSDAVDRAFTAVEEH 70 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCC-----------CTTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcch-----------hcCceEEEEecCCHHHHHHHHHHHHHh
Confidence 368999999999999999999999999996 99999998643 235678999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ...++.+.+.++|+++|++|+.++++++|.++|+|++++ .|+||++||.++..
T Consensus 71 ~g~iDiLVnnAG~~-~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Iv~isS~~~~~---------- 137 (237)
T d1uzma1 71 QGPVEVLVSNAGLS-ADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLW---------- 137 (237)
T ss_dssp HSSCSEEEEECSCC-C-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC------------
T ss_pred cCCceEEEeeeccc-ccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC--CCceEEEcchhhcc----------
Confidence 99999999999986 456888999999999999999999999999999999987 58999999999874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|+++|++.|+.|+ .++|||||+|+||+|+|++... ..+
T Consensus 138 -------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~-~~~-- 188 (237)
T d1uzma1 138 -------------------------GIGNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRA-LDE-- 188 (237)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHH-SCH--
T ss_pred -------------------------CCcccHHHHHHHHHHHHHHHHHHhhh-hcCCceeeeeeeCcCCChhhhc-cCH--
Confidence 44678899999999999999999999 6779999999999999985432 222
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 189 ~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG 234 (237)
T d1uzma1 189 RIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 234 (237)
T ss_dssp HHHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 1222344567889999999999999999999999999999999984
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.3e-48 Score=347.65 Aligned_cols=238 Identities=19% Similarity=0.201 Sum_probs=205.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|+|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++. .+..+.||++|++++++++ ++
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~v~~~~----~~ 71 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKAL----GG 71 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHH----TT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHH----HH
Confidence 478999999999999999999999999996 99999999988888877663 5778899999999987665 46
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ...++.+++.++|+++|++|+.++++++|.+.|.|.+++. +|+||++||.++..
T Consensus 72 ~g~iDilVnnAg~~-~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~---------- 139 (242)
T d1cyda_ 72 IGPVDLLVNNAALV-IMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAHV---------- 139 (242)
T ss_dssp CCCCSEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred cCCCeEEEECCccc-cchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcc-cCcccccchhhccc----------
Confidence 79999999999986 4568889999999999999999999999999998765432 58999999998774
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|++... .....
T Consensus 140 -------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrvN~I~PG~i~T~~~~~-~~~~~ 192 (242)
T d1cyda_ 140 -------------------------TFPNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKK-VSADP 192 (242)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHH-HTCCH
T ss_pred -------------------------cCCccccccchHHHHHHHHHHHHHHh-CccCeecccCCCCCccCHHHHh-hcCCH
Confidence 45778899999999999999999999 6779999999999999985432 22222
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..........|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 193 ~~~~~~~~~~pl~R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG 238 (242)
T d1cyda_ 193 EFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 238 (242)
T ss_dssp HHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCceEEeCcc
Confidence 3334455677889999999999999999999999999999999984
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=4e-48 Score=351.68 Aligned_cols=242 Identities=18% Similarity=0.159 Sum_probs=209.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.+++ +.+..+++||++|+++++++++++.+++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999996 9999999999988888877 4578899999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++|+||||||+.. ..++.+.+.++|+++|++|+.|+|+++++++|+|+++ +|+||++||.++..
T Consensus 79 g~iDilVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~---~G~Iv~isS~~~~~----------- 143 (253)
T d1hxha_ 79 GTLNVLVNNAGILL-PGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET---GGSIINMASVSSWL----------- 143 (253)
T ss_dssp CSCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT---CEEEEEECCGGGTS-----------
T ss_pred CCCCeEEecccccC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CCceecccchhhhc-----------
Confidence 99999999999974 4678899999999999999999999999999999765 48999999999874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccC-CceEEEEeeCCcccCCCCccccch--
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIP-- 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~-~gi~v~~v~PG~v~T~~~~~~~~~-- 319 (399)
+.++..+|++||+|+.+|++.++.|+..+ +|||||+|+||+|+|+++......
T Consensus 144 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~ 199 (253)
T d1hxha_ 144 ------------------------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGV 199 (253)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTC
T ss_pred ------------------------CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchh
Confidence 45678899999999999999999999432 579999999999999864322111
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............+.+|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 200 ~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 200 SKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp CHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred hHHHHHhCccccccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 111222222234567889999999999999999999999999999995
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-47 Score=350.63 Aligned_cols=246 Identities=18% Similarity=0.167 Sum_probs=201.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+ .++.+++||++|+++++++++++.
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999996 99999999999999888886543 468999999999999999999999
Q ss_pred HcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
+++|+||+||||||+..+ ...+.+.+.++|+++|++|+.|+++++|+++|+|++++ |++|+++|..+..
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~S~~~~~----- 152 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSIASGL----- 152 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTTSSS-----
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc---Ccceeeeeecccc-----
Confidence 999999999999998632 23455678899999999999999999999999998864 6787777765432
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
.+.++...|++||+|+++|++.|+.|+ +++|||||+|+||+|+|++....
T Consensus 153 -----------------------------~~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~v~T~~~~~~ 202 (264)
T d1spxa_ 153 -----------------------------HATPDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGSAM 202 (264)
T ss_dssp -----------------------------SCCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC----
T ss_pred -----------------------------ccCCCchhhhhhhhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCCcchhcc
Confidence 245678899999999999999999999 67799999999999999865432
Q ss_pred cchh------hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCCC
Q 015844 317 HIPL------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~------~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg~ 367 (399)
..+. ...........|++|+.+|||+|++++||++++ +.++||+.|.+||.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG 260 (264)
T d1spxa_ 203 GMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGG 260 (264)
T ss_dssp ----------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCC
Confidence 2111 122223445678899999999999999999965 77899999999985
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-47 Score=345.18 Aligned_cols=238 Identities=18% Similarity=0.168 Sum_probs=205.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+.|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++. .+..+.+|++|++++++++ ++
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~----~~ 73 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERAL----GS 73 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHH----TT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHH----HH
Confidence 368999999999999999999999999996 99999999999888877763 4678899999999987766 45
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||+. ...++.+++.++|++++++|+.+++++++.++|.|.++.. .|+||++||.++..
T Consensus 74 ~g~iDilVnnAg~~-~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~~---------- 141 (244)
T d1pr9a_ 74 VGPVDLLVNNAAVA-LLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQR---------- 141 (244)
T ss_dssp CCCCCEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred hCCceEEEeccccc-cccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCC-cceEeecccccccc----------
Confidence 79999999999997 4567889999999999999999999999999997655432 58999999999874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|+++|++.++.|| +++|||||+|+||+|+|++... .....
T Consensus 142 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~-~~~~~ 194 (244)
T d1pr9a_ 142 -------------------------AVTNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQA-TWSDP 194 (244)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHT-TSCSH
T ss_pred -------------------------cccchhhhhhhHHHHHHHHHHHHHHh-CCCcEEEEEEeeCcCcChHHhh-hccCh
Confidence 45678899999999999999999999 6779999999999999985433 22222
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
........+.|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 195 ~~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 195 HKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCcCCcEEEECcc
Confidence 3333445567889999999999999999999999999999999984
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=2.9e-47 Score=348.01 Aligned_cols=253 Identities=17% Similarity=0.216 Sum_probs=214.4
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.++++||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++. ..+.++.+++||++|+++++++++++.
T Consensus 4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999996 99999999888877777663 346789999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+++|++|+||||||+. ...++.+++.++|++++++|+.|++++++.++|+|.+++. +|+|++++|.........
T Consensus 83 ~~~g~iDilVnnAg~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-~g~i~~~~s~~~~~~~~~---- 156 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVS-VVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQS---- 156 (260)
T ss_dssp HHSCSEEEEEECCCCC-CCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCEE----
T ss_pred HHhCCCcEeccccccc-ccCCHHHhccccccccccccccchhhhhhhhccccccccc-ceEEEEeecccccccccc----
Confidence 9999999999999986 5577889999999999999999999999999999866542 578888888766532100
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
...+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|++... ..+
T Consensus 157 ------------------------~~~~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~-~~~ 210 (260)
T d1h5qa_ 157 ------------------------SLNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAH-MDK 210 (260)
T ss_dssp ------------------------ETTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGG-SCH
T ss_pred ------------------------ccccCccccchhhhhhhHHHHHHHHHHHh-chhCeEEeecCCCcccCcchhc-cCH
Confidence 00123567889999999999999999999 6779999999999999986533 222
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..........|++|+.+|||+|+.++||+++.+.++||+.|.+||..
T Consensus 211 --~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 211 --KIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp --HHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred --HHHHHHHhcCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEECCCe
Confidence 22334456678899999999999999999999999999999999953
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2.3e-47 Score=350.87 Aligned_cols=244 Identities=17% Similarity=0.148 Sum_probs=205.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+ .++.+++||++|+++++++++++.
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999996 99999999999999988886543 468999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCC----CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecc-ccccCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKE----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI-TGNTNTL 234 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~----~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~-~~~~~~~ 234 (399)
+++|+||+||||||+..+ ..+ .+.+.++|++++++|+.|+++++|+++|+|++++ |++|+++|. ++..
T Consensus 81 ~~~g~iDilvnnAG~~~~-~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~Ss~a~~~--- 153 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAIP-DAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSSIVAGPQ--- 153 (272)
T ss_dssp HHHSCCCEEEECCCCCCC-CTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGSSS---
T ss_pred HHhCCceEEEeCCcccCc-ccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC---Cccccccchhcccc---
Confidence 999999999999999744 233 3456678999999999999999999999998864 566666664 4443
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCc
Q 015844 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~ 314 (399)
+.++...|++||+|+.+|++.|+.|| +++|||||+|+||+|+|++..
T Consensus 154 --------------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~ 200 (272)
T d1xkqa_ 154 --------------------------------AQPDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTN 200 (272)
T ss_dssp --------------------------------CCCSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHH
T ss_pred --------------------------------CCCCcchhhhHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcchhhh
Confidence 45778899999999999999999999 678999999999999998653
Q ss_pred cccchh--h----hhhchhhHHHHhcCCCChHHHHHHHHHhhcCC-CCCCCceEEccCCC
Q 015844 315 REHIPL--F----RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKD 367 (399)
Q Consensus 315 ~~~~~~--~----~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~-~~~~~G~~~~~dg~ 367 (399)
....+. . ..........|++|+.+|||+|+.++||++++ +.|+||+.|.+||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG 260 (272)
T d1xkqa_ 201 AMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGG 260 (272)
T ss_dssp HTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred ccCCchHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcC
Confidence 322111 1 11112233467899999999999999999975 56899999999995
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=3.5e-47 Score=349.84 Aligned_cols=246 Identities=17% Similarity=0.150 Sum_probs=208.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC---CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+ .++.++.||++|+++++++++++.
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999996 99999999999999888886543 468999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCC-CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+++|+||+||||||..... ....+.+.++|++++++|+.|+|+++|+++|+|++++ +|+|+++||.++..
T Consensus 80 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~ii~~ss~~~~~------- 150 (274)
T d1xhla_ 80 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQ------- 150 (274)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSS-------
T ss_pred HHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc--cccccchhhhhccc-------
Confidence 9999999999999985432 2344568899999999999999999999999999875 57888888877763
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|+.+|++.++.|+ ++.|||||+|+||+|+|++......
T Consensus 151 ----------------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~ 201 (274)
T d1xhla_ 151 ----------------------------AHSGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMGAMGL 201 (274)
T ss_dssp ----------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHHHTTC
T ss_pred ----------------------------cCCCCceehhhhhHHHHHHHHHHHHH-hHhCCceeeeccCCCcCchhhhhcc
Confidence 45678899999999999999999999 6779999999999999985433211
Q ss_pred hh--hh----hhchhhHHHHhcCCCChHHHHHHHHHhhcC-CCCCCCceEEccCCC
Q 015844 319 PL--FR----LLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~--~~----~~~~~~~~~~~~~~~~pee~a~~v~~l~~~-~~~~~~G~~~~~dg~ 367 (399)
.. .. .+.......|++|+.+|||+|+.++||+++ .+.++||+.+.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~iPlgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG 257 (274)
T d1xhla_ 202 PETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGG 257 (274)
T ss_dssp CHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred cchhhHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcC
Confidence 11 11 111122345789999999999999999995 578999999999995
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-46 Score=338.99 Aligned_cols=248 Identities=18% Similarity=0.234 Sum_probs=212.5
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC--CcEEEEEecCCCHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+.+++||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++..+ .++.+++||++++++++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 4469999999999999999999999999996 99999999999999999887653 57899999999999999999999
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
.+++|+||+||||||.. ...++.+++.++|++.+++|+.+++++++.++|.|++.+..+|+||++||.++..+
T Consensus 84 ~~~~g~iD~lVnnAg~~-~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~------ 156 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLA-RPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------ 156 (257)
T ss_dssp HHHHCCCSEEEECCCCC-CCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC------
T ss_pred HHhcCCCCEEEeccccc-CCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC------
Confidence 99999999999999987 45688899999999999999999999999999999887655689999999988631
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCcccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
.+......|+++|+|+.+|++.|+.|+. .++||+||+|+||+++|++.....
T Consensus 157 ---------------------------~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~ 209 (257)
T d1xg5a_ 157 ---------------------------LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLH 209 (257)
T ss_dssp ---------------------------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHT
T ss_pred ---------------------------CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcC
Confidence 1345778899999999999999999973 467999999999999998543221
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceE-EccCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY-WSWNK 366 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~-~~~dg 366 (399)
. ..........+.+++.+|||+|++++||+++++.++||+. +..+|
T Consensus 210 -~--~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~a~~itG~i~i~~~g 256 (257)
T d1xg5a_ 210 -D--KDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQIGDIQMRPTG 256 (257)
T ss_dssp -T--TCHHHHHHHHC---CBCHHHHHHHHHHHHHSCTTEEEEEEEEEETT
T ss_pred -h--hhHHHHHhcCCCCCCcCHHHHHHHHHHHhCChhcCeECCEEEEeCC
Confidence 1 1223445567788999999999999999999999999985 66665
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=7e-46 Score=334.20 Aligned_cols=224 Identities=19% Similarity=0.247 Sum_probs=199.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCc------EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~------~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+++|||||++|||+++|+.|+++|++ .|++++|+.++++++.++++..+.++.++.||++|+++++++++++.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999973 299999999999999999988888999999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|++|+||||||+. ...++.+++.++|+++|++|+.|+++++|.++|+|++++ .|+||++||.++..
T Consensus 82 ~~g~iDilvnnAg~~-~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~--------- 149 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVG-RFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAATK--------- 149 (240)
T ss_dssp HTSCCSEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred HcCCcceeecccccc-cCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC--CCceEEEechhhcC---------
Confidence 999999999999987 557888999999999999999999999999999999876 58999999999875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|+.+|+++|+.|+ ++.|||||+|+||+|+|+++.. ....
T Consensus 150 --------------------------~~~~~~~Y~asK~al~~lt~~la~el-~~~gIrvn~i~PG~v~T~~~~~-~~~~ 201 (240)
T d2bd0a1 150 --------------------------AFRHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGK-VDDE 201 (240)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCC-CCST
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEeeeCcccCchhhh-cCHh
Confidence 45778899999999999999999999 6779999999999999996533 2111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceE
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY 361 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~ 361 (399)
...++.+|||+|+.++|++++++.+.+|..
T Consensus 202 -----------~~~~~~~PedvA~~v~~l~s~~~~~~~~~~ 231 (240)
T d2bd0a1 202 -----------MQALMMMPEDIAAPVVQAYLQPSRTVVEEI 231 (240)
T ss_dssp -----------TGGGSBCHHHHHHHHHHHHTSCTTEEEEEE
T ss_pred -----------hHhcCCCHHHHHHHHHHHHcCCccCccCCE
Confidence 113567999999999999999888766654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=3.4e-46 Score=340.76 Aligned_cols=244 Identities=17% Similarity=0.179 Sum_probs=210.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEe-ecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.|.||++|||||++|||+++|+.|+++|+ +|+++ .|+.+.++++.+++...+.++++++||++|+++++++++++.++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999996 77775 56677788888888888889999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+|+||+||||||.. ...++.+.+.++|+++|++|+.++++++|.++|+|+++ |++++++|..+..
T Consensus 82 ~g~idilinnag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----g~~iii~s~~~~~---------- 146 (259)
T d1ja9a_ 82 FGGLDFVMSNSGME-VWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG----GRIILTSSIAAVM---------- 146 (259)
T ss_dssp HSCEEEEECCCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE----EEEEEECCGGGTC----------
T ss_pred cCCCcEEEeccccc-cccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC----Ccccccccccccc----------
Confidence 99999999999986 55678889999999999999999999999999999764 5888888876653
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc----
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---- 317 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~---- 317 (399)
.+.+++..|++||+|+.+|+|.|++|+ +++|||||+|+||+|+|+++....
T Consensus 147 ------------------------~~~~~~~~Y~asK~al~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~ 201 (259)
T d1ja9a_ 147 ------------------------TGIPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFDENSWHYA 201 (259)
T ss_dssp ------------------------CSCCSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGTS
T ss_pred ------------------------cCCCCchhHHHHHHHHHHHHHHHHHHH-hhcCeEEeccCcCCccChhhhhhhhhhh
Confidence 245678899999999999999999999 677999999999999998543211
Q ss_pred ------chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 318 ------IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ------~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.+............|++|+.+|+|+|++++||+++.+.++||+.|.+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 202 PGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp TTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 11111222334566789999999999999999999999999999999984
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=6.1e-46 Score=341.84 Aligned_cols=242 Identities=16% Similarity=0.107 Sum_probs=204.0
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++ +.++..+.+|++++++++++++++.++
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---GDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCeeEEecccccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 9999999998888777665 467899999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCC----CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKE----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~----~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
+|++|++|||||+......+ .+.+.++|+++|++|+.|+++++|+++|+|++++ |+||+++|.++..
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---g~iI~i~S~~~~~------ 147 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR---GNVIFTISNAGFY------ 147 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTS------
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC---CCceeeeechhcc------
Confidence 99999999999986443322 3344567999999999999999999999998764 7999999988774
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.++...|++||+|+.+|+++|+.|+ ++ +||||+|+||+|+|++.....
T Consensus 148 -----------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~-~IrVN~I~PG~i~T~~~~~~~ 196 (276)
T d1bdba_ 148 -----------------------------PNGGGPLYTAAKHAIVGLVRELAFEL-AP-YVRVNGVGSGGINSDLRGPSS 196 (276)
T ss_dssp -----------------------------TTSSCHHHHHHHHHHHHHHHHHHHHH-TT-TCEEEEEEECCCCSCCCCCGG
T ss_pred -----------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hc-ceEEcccCCCCEecCcCCccc
Confidence 44677899999999999999999999 56 599999999999998654322
Q ss_pred chhh-------hhhchhhHHHHhcCCCChHHHHHHHHHhhcC-CCCCCCceEEccCCC
Q 015844 318 IPLF-------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKD 367 (399)
Q Consensus 318 ~~~~-------~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~-~~~~~~G~~~~~dg~ 367 (399)
.... ..........|++|+.+|||+|+.++||+++ .+.++||+.|.+||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG 254 (276)
T d1bdba_ 197 LGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGG 254 (276)
T ss_dssp GC---------CHHHHHTTTCTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred hhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence 1111 1111223346789999999999999999985 578899999999995
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-45 Score=336.17 Aligned_cols=236 Identities=17% Similarity=0.176 Sum_probs=201.8
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++... +.++.+++||++|+++++++++++.++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 3699999999999999999999999996 9999999999999888887543 568999999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+|+||+||||||+. ..++|++++++|+.+++++++.++|+|.+++. .+|+||++||.++..
T Consensus 80 ~G~iDilVnnAg~~---------~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~--------- 141 (254)
T d2gdza1 80 FGRLDILVNNAGVN---------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------- 141 (254)
T ss_dssp HSCCCEEEECCCCC---------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------
T ss_pred cCCcCeeccccccc---------ccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---------
Confidence 99999999999985 23568999999999999999999999987653 248999999999875
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHH--HHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQE--FHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~--la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++..+|++||+|+.+|+|+ |+.|+ +++|||||+|+||+|+|+++.....
T Consensus 142 --------------------------~~~~~~~Y~asKaal~~ltrs~ala~e~-~~~gIrVN~I~PG~i~T~~~~~~~~ 194 (254)
T d2gdza1 142 --------------------------PVAQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEK 194 (254)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHGGGC
T ss_pred --------------------------CCCCccchHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEEEcCCCCChhhhhccc
Confidence 457788999999999999996 78898 6789999999999999986532111
Q ss_pred h-----hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 P-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~-----~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
. ............|.+|+.+|||+|+.++||++++ ++||+.|.+||.
T Consensus 195 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~--~itG~~i~VdGG 246 (254)
T d2gdza1 195 EENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDD--ALNGAIMKITTS 246 (254)
T ss_dssp HHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCT--TCSSCEEEEETT
T ss_pred cccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHcCC--CCCCCEEEECCC
Confidence 1 1111223345667889999999999999999975 499999999985
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=1e-45 Score=333.48 Aligned_cols=236 Identities=19% Similarity=0.179 Sum_probs=203.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++ +.++.+++||++++++++++++++.+++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999996 9999999998877666654 5788999999999999999999999999
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
|++|+||||||.. ...++.+++.++|++++++|+.++++++|+++|+|.+. +.|+++||.+..
T Consensus 78 g~iDiLinnAg~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~----~~i~~~ss~a~~------------ 140 (241)
T d2a4ka1 78 GRLHGVAHFAGVA-HSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG----GSLVLTGSVAGL------------ 140 (241)
T ss_dssp SCCCEEEEGGGGT-TTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT----CEEEEECCCTTC------------
T ss_pred CCccEeccccccc-cccchhhhhccccccccccccccccccccccccccccc----cceeeccccccc------------
Confidence 9999999999986 45788899999999999999999999999999998764 366666665543
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+++..|+++|+|+++|++.|++|+ .++|||||+|+||+|+|+++.. ..+ .
T Consensus 141 ------------------------~~~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~-~~~--~ 192 (241)
T d2a4ka1 141 ------------------------GAFGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAG-LPP--W 192 (241)
T ss_dssp ------------------------CHHHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTT-SCH--H
T ss_pred ------------------------cccCccccchhhHHHHHHHHHHHHHH-hHhCCEEeeeccCcCCCHHHHh-hhH--h
Confidence 34678899999999999999999999 6789999999999999985532 222 2
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.......+.|.+|+.+|+|+|++++||+++.+.++||+.+.+||.
T Consensus 193 ~~~~~~~~~p~~r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG 237 (241)
T d2a4ka1 193 AWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGG 237 (241)
T ss_dssp HHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEeCCC
Confidence 333455677889999999999999999999999999999999995
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=3.4e-46 Score=339.21 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=203.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
|+|||||++|||+++|+.|+++|+ +|++++|+.+.++++..... .+.+||+++.++++++++++.+++|+||+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~------~~~~~dv~~~~~~~~~~~~~~~~~G~iDi 74 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAE------TYPQLKPMSEQEPAELIEAVTSAYGQVDV 74 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHH------HCTTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhC------cEEEeccCCHHHHHHHHHHHHHHcCCCCE
Confidence 899999999999999999999996 99999999877766544322 13468999999999999999999999999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
||||||+.....++.+++.++|++++++|+.++|+++|+++|+|++++ .|+||++||.++..
T Consensus 75 LVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~IV~isS~~~~~---------------- 136 (252)
T d1zmta1 75 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPFG---------------- 136 (252)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTTS----------------
T ss_pred EEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc--cceeeccccccccc----------------
Confidence 999999875667888999999999999999999999999999999876 58999999998874
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh-----hh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-----FR 322 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~-----~~ 322 (399)
+.++...|++||+|+.+|+|.|+.|+ +++|||||+|+||+|+|++........ ..
T Consensus 137 -------------------~~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e 196 (252)
T d1zmta1 137 -------------------PWKELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPE 196 (252)
T ss_dssp -------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHH
T ss_pred -------------------ccccccccccccccHHHHHHHHHHHh-cccCcEEEEEecCCCcCcchhhhhhcccccCCHH
Confidence 45678899999999999999999999 677999999999999998654322111 12
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.........|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 197 ~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG 241 (252)
T d1zmta1 197 HVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGG 241 (252)
T ss_dssp HHHHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 223345567789999999999999999999999999999999995
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=3.8e-45 Score=336.30 Aligned_cols=246 Identities=17% Similarity=0.187 Sum_probs=210.9
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC-hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..+|+||++|||||++|||+++|+.|+++|+ +|++++|+ .+.++++.++++..+.++.+++||++|+++++++++++.
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence 4479999999999999999999999999996 88888765 567778888888888899999999999999999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (399)
+.+|++|++|||+|.. ...++.+.+.++|++++++|+.++++++++++|+|.++ |++++++|..+..
T Consensus 92 ~~~g~idilV~nag~~-~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~----g~~i~i~s~~~~~-------- 158 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVV-SFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG----GRLILMGSITGQA-------- 158 (272)
T ss_dssp HHHSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT----CEEEEECCGGGTC--------
T ss_pred HHhCCCCccccccccc-hhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc----ccccccccccccc--------
Confidence 9999999999999986 45678889999999999999999999999999999874 5999999887653
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch
Q 015844 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~ 319 (399)
.+.++...|+++|+|+++|++.++.|| +++|||||+|+||+|+|++.......
T Consensus 159 --------------------------~~~~~~~~Y~asKaal~~ltk~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~~ 211 (272)
T d1g0oa_ 159 --------------------------KAVPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCRE 211 (272)
T ss_dssp --------------------------SSCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGG
T ss_pred --------------------------ccccchhhHHHHHHHHHHHHHHHHHHh-chhCeEEEEEccCCcCChHHHHHHHh
Confidence 234667889999999999999999999 67799999999999999854221110
Q ss_pred ----------hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 ----------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ----------~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............|++|+.+|+|+|++++||+++.+.++||+.+.+||.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG 269 (272)
T d1g0oa_ 212 YIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG 269 (272)
T ss_dssp GSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhcccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCchhcCccCceEeECCC
Confidence 000111233456789999999999999999999999999999999995
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-45 Score=336.05 Aligned_cols=243 Identities=12% Similarity=0.101 Sum_probs=201.3
Q ss_pred cccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+|+||++|||||+| |||+++|++|+++|+ +|++++|++...+...+ +...+.+..++++|++|+++++++++++.
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEK-LAEALGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH-HHHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHH-hhhccCcccccccccCCHHHHHHHHHHHH
Confidence 378999999999986 999999999999997 89999998655444333 33334567789999999999999999999
Q ss_pred HcCCCccEEEecCcccCC---CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
+++|+||+||||||+... ...+.+.+.++|+..+++|+.+++.+++.+.|.|++ +|+||++||..+..
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~----~G~Iv~isS~~~~~----- 152 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE----GGGIVTLTYYASEK----- 152 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEEECGGGTS-----
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhcc----CCEEEEEeehHhcC-----
Confidence 999999999999998532 234557788999999999999999999999999876 37999999998874
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+.++...|++||+|+++|++++|.|| +++|||||+|+||+|+|++...
T Consensus 153 ------------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~I~PG~i~t~~~~~- 200 (256)
T d1ulua_ 153 ------------------------------VVPKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARS- 200 (256)
T ss_dssp ------------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC--------
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCCEEeeeccceeeeccccc-
Confidence 44678899999999999999999999 6779999999999999985433
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
...............|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 201 ~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 251 (256)
T d1ulua_ 201 IPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAG 251 (256)
T ss_dssp ---CHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcC
Confidence 222233344556677899999999999999999999999999999999985
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.7e-45 Score=326.94 Aligned_cols=230 Identities=17% Similarity=0.175 Sum_probs=194.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
|+||++|||||++|||+++|+.|+++|+ +|++++|+++.+++. ...++.||+++. ++.+.++++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~~---------~~~~~~~Dv~~~------~~~~~~~~g 65 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKRS---------GHRYVVCDLRKD------LDLLFEKVK 65 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHT---------CSEEEECCTTTC------HHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHhc---------CCcEEEcchHHH------HHHHHHHhC
Confidence 6899999999999999999999999996 999999997655432 235678999864 445566789
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+||+||||||+. ...++.+++.++|+++|++|+.++++++|+++|+|++++ .|+||+++|..+..
T Consensus 66 ~iD~lVnnAG~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~--~G~ii~i~S~~~~~------------ 130 (234)
T d1o5ia_ 66 EVDILVLNAGGP-KAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVIS------------ 130 (234)
T ss_dssp CCSEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS------------
T ss_pred CCcEEEeccccc-CCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc--cccccccccccccc------------
Confidence 999999999986 456788999999999999999999999999999999876 58999999988764
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
+.++...|++||+|+.+|++.++.|+ +++|||||+|+||+|+|++......+ ..
T Consensus 131 -----------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~~~~~--~~ 184 (234)
T d1o5ia_ 131 -----------------------PIENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKELLSE--EK 184 (234)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHHHSCH--HH
T ss_pred -----------------------cccccccchhHHHHHHHHHHHHHHHh-cccCeEEeecccCccchhhhhhhcCH--HH
Confidence 45678899999999999999999999 67799999999999999865432222 12
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcc
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 370 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~ 370 (399)
......+.|++|+.+|||+|+.++||+++.+.++||+.|.+||.-..
T Consensus 185 ~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s~ 231 (234)
T d1o5ia_ 185 KKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGLSK 231 (234)
T ss_dssp HHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCcCcEEEECccccc
Confidence 22334567889999999999999999999999999999999996433
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=6.9e-44 Score=331.76 Aligned_cols=271 Identities=15% Similarity=0.191 Sum_probs=220.9
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.+|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++. ..+.++.++.||+++.++++++++.+.+
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 489999999999999999999999999996 99999999998888877764 3467889999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
+++++|+||||||.. ....+.+.+.++|++++.+|+.+.+.+.+...+.+..... .+.+++++|..+..
T Consensus 100 ~~g~iDilvnnAg~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~i~~~ss~~~~~--------- 168 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGN-FISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK-GAAFLSITTIYAET--------- 168 (294)
T ss_dssp HTCSCSEEEECCCCC-CCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEECCTHHHH---------
T ss_pred hccccchhhhhhhhc-cccccccchhhhhhhheeeecccchhhhhhhhcccccccc-cccccccccchhhh---------
Confidence 999999999999986 4456778899999999999999999999988877766543 47788888887764
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|+.+|++.+|.|+ +++|||||+|+||+|+|++......+.
T Consensus 169 --------------------------~~~~~~~YsasKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~ 221 (294)
T d1w6ua_ 169 --------------------------GSGFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPT 221 (294)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTT
T ss_pred --------------------------cccccchHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEccCccccchhhhccCCc
Confidence 34677889999999999999999999 677999999999999998654433333
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCH-HHHHHHHHHHHH
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDV-EKARKVWEISEK 394 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~-~~~~~lw~~~~~ 394 (399)
...........|++|+.+|||+|+.++||+++.+.++||+.|.+||.... .......+. +...+.|+-+|+
T Consensus 222 ~~~~~~~~~~~pl~R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~~l---~~~~~~~~~~~~~~~~~~~~~~ 293 (294)
T d1w6ua_ 222 GTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEV---LISGEFNDLRKVTKEQWDTIEE 293 (294)
T ss_dssp SHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHH---HHHSTTGGGGGCCHHHHHHHTT
T ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCchhcCCCCcEEEECCChhh---eeCCCCCchhhcchhhhhhHhh
Confidence 33444555677889999999999999999999999999999999996321 111122222 335667777665
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.2e-44 Score=333.64 Aligned_cols=230 Identities=17% Similarity=0.168 Sum_probs=197.1
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC---------hHHHHHHHHHhccCCCcEEEEEecCCCHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---------FLKAERAAKSAGMAKENYTIMHLDLASLDSV 151 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~---------~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v 151 (399)
+++|+||++|||||++|||+++|+.|+++|+ +|++.+|+ ...+++..+++... .....+|++|.+++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~ 77 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRR---GGKAVANYDSVEAG 77 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHT---TCEEEEECCCGGGH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhc---ccccccccchHHHH
Confidence 3579999999999999999999999999997 89988654 45566666666543 34567899999999
Q ss_pred HHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccccc
Q 015844 152 RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (399)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~ 231 (399)
+++++++.+++|+||+||||||+. ...++.+++.++|++++++|+.|+++++|+++|+|++++ .|+||++||.++..
T Consensus 78 ~~~v~~~~~~~G~iDiLVnNAGi~-~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IV~isS~~~~~ 154 (302)
T d1gz6a_ 78 EKLVKTALDTFGRIDVVVNNAGIL-RDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGIY 154 (302)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCC-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCccC-CCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC--CcEEEEeCChhhcC
Confidence 999999999999999999999997 457888999999999999999999999999999999876 58999999999875
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||++.|.
T Consensus 155 -----------------------------------~~~~~~~Y~asKaal~~lt~~la~E~-~~~gIrVN~I~PG~~~t~ 198 (302)
T d1gz6a_ 155 -----------------------------------GNFGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAGSRM 198 (302)
T ss_dssp -----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECCSTT
T ss_pred -----------------------------------CCCCcHHHHHHHHHHHHHHHHHHHHH-hccCCceeeeCCCCCCcc
Confidence 44678899999999999999999999 677999999999999774
Q ss_pred CCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
+...... +..+..+|||+|+.++||+++.+ ++||+.|.+||.
T Consensus 199 -~~~~~~~------------~~~~~~~PedvA~~v~fL~S~~a-~itG~~i~vdGG 240 (302)
T d1gz6a_ 199 -TETVMPE------------DLVEALKPEYVAPLVLWLCHESC-EENGGLFEVGAG 240 (302)
T ss_dssp -TGGGSCH------------HHHHHSCGGGTHHHHHHHTSTTC-CCCSCEEEEETT
T ss_pred -hhhcCcH------------hhHhcCCHHHHHHHHHHHcCCCc-CCCCcEEEeCCC
Confidence 3222111 12345689999999999999765 689999999984
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-43 Score=316.36 Aligned_cols=221 Identities=18% Similarity=0.199 Sum_probs=195.8
Q ss_pred ccccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++.||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+.++.++.||++|+++++++++++.+
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4579999999999999999999999999996 999999999999999999988888999999999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|++|++|||||+... ..+.+.+.++|+++|++|+.|++++++.++|+|++++ .|+||++||.++..
T Consensus 81 ~~g~idilinnag~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~G~Iv~isS~~~~~--------- 148 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVYT-SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAGHV--------- 148 (244)
T ss_dssp HTCCCSEEEECCCCCCC-CCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-CC---------
T ss_pred HcCCCceeEeecccccc-ccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC--CceEEEeecchhcC---------
Confidence 99999999999999744 5667889999999999999999999999999999886 58999999999884
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc--CCceEEEEeeCCcccCCCCccccc
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.+++..|++||+|+.+|+++|+.|+.. ..||+||+|+||+|+|+++....
T Consensus 149 --------------------------~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~- 201 (244)
T d1yb1a_ 149 --------------------------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS- 201 (244)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-
Confidence 5678999999999999999999999842 25899999999999998553211
Q ss_pred hhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
....+..+||++|+.++..+...
T Consensus 202 ------------~~~~~~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 202 ------------TSLGPTLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp ------------HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred ------------ccccCCCCHHHHHHHHHHHHhcC
Confidence 12345679999999998876554
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-43 Score=320.85 Aligned_cols=237 Identities=19% Similarity=0.206 Sum_probs=199.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+. ..+....+|+.+.+.++.+.+ .+
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~-----~~~~~~~~d~~~~~~~~~~~~----~~ 72 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKY-----PGIQTRVLDVTKKKQIDQFAN----EV 72 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGS-----TTEEEEECCTTCHHHHHHHHH----HC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-----cCCceeeeecccccccccccc----cc
Confidence 48999999999999999999999999996 999999998776654332 346788899998776665544 56
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||.. ...++.+++.++|++.+++|+.+++++++.+.|+|.+++ .|+||++||..+..
T Consensus 73 ~~id~lVn~ag~~-~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~g~Ii~isS~~~~~----------- 138 (245)
T d2ag5a1 73 ERLDVLFNVAGFV-HHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASSV----------- 138 (245)
T ss_dssp SCCSEEEECCCCC-CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTT-----------
T ss_pred ccceeEEeccccc-CCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC--Cceeeeeechhhcc-----------
Confidence 7999999999997 446788899999999999999999999999999998876 58999999987753
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc---ch
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IP 319 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~---~~ 319 (399)
.+++...+|+++|+|+++|+|.||.|| +++|||||+|+||+|+|++..... ..
T Consensus 139 -----------------------~~~~~~~~Y~~sKaal~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~ 194 (245)
T d2ag5a1 139 -----------------------KGVVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARGN 194 (245)
T ss_dssp -----------------------BCCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSSS
T ss_pred -----------------------CCccchhHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeceeechhhHhhhhhhhh
Confidence 245678899999999999999999999 677999999999999998543211 11
Q ss_pred hhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
............|++|+.+|||+|+.+.||+++.+.++||+.|.+||.
T Consensus 195 ~~~~~~~~~~~~pl~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG 242 (245)
T d2ag5a1 195 PEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGG 242 (245)
T ss_dssp HHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCceEEeCCC
Confidence 112233445567889999999999999999999999999999999995
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.8e-43 Score=318.93 Aligned_cols=242 Identities=17% Similarity=0.139 Sum_probs=202.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHH---cCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAE---TGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~---~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.|+||++|||||++|||+++|+.|++ +|+ +|++++|+.++++++.+++.. .+.++.+++||++++++++++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 58899999999999999999999996 795 999999999999999888854 356899999999999999999999
Q ss_pred HHHc----CCCccEEEecCcccCC--CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEecccccc
Q 015844 158 FRRS----GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (399)
Q Consensus 158 ~~~~----~g~id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~ 231 (399)
+.+. ++.+|++|||||...+ ..++.+.+.++|+++|++|+.|++++++.++|+|++++...|+||++||.++..
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 8773 4679999999998642 345678899999999999999999999999999998754458999999999874
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
+.+++..|++||+|+++|+++|+.|. +|||||+|+||+|+|+
T Consensus 162 -----------------------------------~~~~~~~Y~asKaal~~lt~~la~e~---~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 162 -----------------------------------PYKGWGLYCAGKAARDMLYQVLAAEE---PSVRVLSYAPGPLDND 203 (259)
T ss_dssp -----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHC---TTEEEEEEECCSBSSH
T ss_pred -----------------------------------CCccchHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEcCCCCCH
Confidence 55788999999999999999999983 5999999999999998
Q ss_pred CCcccc--chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 312 GLFREH--IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 312 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
|..... ..............+.+++.+|+|+|+.+++++++. .++||++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~evA~~i~~ll~~~-s~~TG~~idv 257 (259)
T d1oaaa_ 204 MQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKD-TFQSGAHVDF 257 (259)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHHC-CSCTTEEEET
T ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhc-cCCCCCeEEe
Confidence 542211 001111122233446788999999999999999864 5899999976
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=1.6e-42 Score=314.82 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=191.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh-ccCCCcEEEEEecCC-CHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLA-SLDSVRQFVDTFR 159 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~-~~~~~~~~~~~~Dvs-~~~~v~~~~~~~~ 159 (399)
++|+||++|||||++|||+++|++|+++|+ +|++++|+.++.+.+.+.. ...+.++.++.+|++ +.++++++++++.
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999997 7777777655544443322 233567899999998 6788999999999
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC-CCceEEEEeccccccCCCCCCC
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+++|+||+||||||.. +.++|++++++|+.|++++++.++|.|.+++. ++|+||++||.++..
T Consensus 80 ~~~g~iDilvnnAG~~---------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------- 143 (254)
T d1sbya1 80 DQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------- 143 (254)
T ss_dssp HHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------
T ss_pred HHcCCCCEEEeCCCCC---------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc-------
Confidence 9999999999999964 46789999999999999999999999987642 358999999999874
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.+++..|++||+|+.+|+++|+.++ .++|||||+|+||+|+|++.. ...
T Consensus 144 ----------------------------~~~~~~~Y~asKaal~~~t~~la~el-~~~gIrVn~I~PG~v~T~~~~-~~~ 193 (254)
T d1sbya1 144 ----------------------------AIHQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVH-TFN 193 (254)
T ss_dssp ----------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHH-SCC
T ss_pred ----------------------------CCCCCHHHHHHHHHHHHHHHHHHhhc-cccCeEEEEEEeCCCcCcccc-ccc
Confidence 55788899999999999999999999 667999999999999998542 222
Q ss_pred hhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 319 PLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 319 ~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.. ....+.+...+. .+..+||++|+.++++++. ..||+.|.+||..
T Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~e~va~~~~~~~~~---~~tG~vi~vdgG~ 240 (254)
T d1sbya1 194 SW-LDVEPRVAELLLSHPTQTSEQCGQNFVKAIEA---NKNGAIWKLDLGT 240 (254)
T ss_dssp CG-GGSCTTHHHHHTTSCCEEHHHHHHHHHHHHHH---CCTTCEEEEETTE
T ss_pred cc-hhHHHHHHhccccCCCCCHHHHHHHHHHhhhC---CCCCCEEEECCCE
Confidence 21 222233344443 4467899999999888764 3599999999853
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=2.3e-41 Score=306.83 Aligned_cols=233 Identities=22% Similarity=0.305 Sum_probs=189.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHH---HcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH--
Q 015844 86 KGSVIITGASSGLGLATAKALA---ETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR-- 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~---~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~-- 160 (399)
.|+||||||++|||+++|+.|+ ++|+ +|++++|+.++++++.+.. ..+.++.++.||++|+++++++++++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 79 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLA-KNHSNIHILEIDLRNFDAYDKLVADIEGVT 79 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHH-HHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHH-hcCCcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence 5799999999999999999997 4785 9999999988877665433 3356899999999999999999998854
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC---------CCCceEEEEecccccc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---------YPSKRLIIVGSITGNT 231 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~---------~~~g~iV~vSS~~~~~ 231 (399)
.+++||+||||||+......+.+.+.++|++++++|+.|++++++.++|+|+++. ...|++|+++|..+..
T Consensus 80 ~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~ 159 (248)
T d1snya_ 80 KDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSI 159 (248)
T ss_dssp GGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCS
T ss_pred hcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 6789999999999976666677889999999999999999999999999998641 1258999999998764
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
+. .+.+++.+|++||+|+++|++.++.++ ++.||+||+|+||+|+|+
T Consensus 160 ~~--------------------------------~~~~~~~~Y~aSKaal~~lt~~la~e~-~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 160 QG--------------------------------NTDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp TT--------------------------------CCSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCSBCST
T ss_pred CC--------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcCCCcccCC
Confidence 21 234677899999999999999999999 667999999999999998
Q ss_pred CCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCccc
Q 015844 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASF 371 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~ 371 (399)
|.... . ..++++.+..++.++.......+|+||.+||...+|
T Consensus 207 m~~~~-~-----------------~~~~~~~~~~i~~~i~~l~~~~tG~~i~~dG~~ipW 248 (248)
T d1snya_ 207 MGGSS-A-----------------PLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW 248 (248)
T ss_dssp TTCTT-C-----------------SBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBCCC
T ss_pred ccccc-C-----------------CCCchHHHHHHHHHHHhcCccCCCcEEEECCeEcCC
Confidence 54321 1 124445555555555555556799999999975543
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=4.3e-41 Score=305.31 Aligned_cols=235 Identities=20% Similarity=0.270 Sum_probs=187.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
|+.|+||||||++|||+++|++|+++|+ .+|++++|+.++++++.+ ..+.++.++.||++|.++++++++++.+.+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~---~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 77 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS---IKDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT---CCCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH---hhCCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence 4569999999999999999999999996 378999999887776543 235689999999999999999999998876
Q ss_pred C--CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC---------CCceEEEEecccccc
Q 015844 163 R--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---------PSKRLIIVGSITGNT 231 (399)
Q Consensus 163 g--~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~---------~~g~iV~vSS~~~~~ 231 (399)
+ +||+||||||+.....++.+.+.++|+++|++|+.|++++++.++|+|+++.. ..+++++++|..+..
T Consensus 78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 157 (250)
T d1yo6a1 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc
Confidence 5 49999999998766567778899999999999999999999999999986421 136899998877664
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
.... ...+..+..+|++||+|+++|++.|+.|+ ++.||+||+|+||+|+|+
T Consensus 158 ~~~~----------------------------~~~~~~~~~aY~aSKaal~~l~~~la~el-~~~gI~v~~i~PG~v~T~ 208 (250)
T d1yo6a1 158 TDNT----------------------------SGSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp TTCC----------------------------STTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC---
T ss_pred cCCc----------------------------ccccchhHHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCCC
Confidence 2210 01123456689999999999999999999 667999999999999998
Q ss_pred CCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
|.... ...+|||.+..++..+.......+|+||.+||.+
T Consensus 209 m~~~~------------------~~~~~e~~a~~~~~~~~~~~~~~sG~f~~~~g~p 247 (250)
T d1yo6a1 209 LGGKN------------------AALTVEQSTAELISSFNKLDNSHNGRFFMRNLKP 247 (250)
T ss_dssp ----------------------------HHHHHHHHHHHTTCCGGGTTCEEETTEEE
T ss_pred CCCCC------------------CCCCHHHHHHHHHHHHhcCCCCCCeEEECCCCee
Confidence 54211 2358999999999999887777899999999853
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-41 Score=312.50 Aligned_cols=253 Identities=21% Similarity=0.244 Sum_probs=192.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHHc-CCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++|||||++|||+++|+.|+++ |+ +|++++|+.++++++.++++..+.++.+++||++|.++++++++++.+++|+|
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~i 82 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 82 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 56799999999999999999986 74 99999999999999999998888889999999999999999999999999999
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC---
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA--- 242 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~--- 242 (399)
|+||||||+... ....+.+.++|+++|++|++|++++++.++|+|+++ |+||++||+.+..+.... .|...
T Consensus 83 DiLVnNAGi~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~----g~ivnisS~~~~~~~~~~-~~y~~~k~ 156 (275)
T d1wmaa1 83 DVLVNNAGIAFK-VADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ----GRVVNVSSIMSVRALKSC-SPELQQKF 156 (275)
T ss_dssp EEEEECCCCCCC-TTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEECCHHHHHHHHTS-CHHHHHHH
T ss_pred EEEEEcCCcCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccceecccccc-chhhhhhh
Confidence 999999999744 556677889999999999999999999999999763 799999998876432110 00000
Q ss_pred -----CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc---CCceEEEEeeCCcccCCCCc
Q 015844 243 -----NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE---ETGIAFASLYPGCIATTGLF 314 (399)
Q Consensus 243 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~---~~gi~v~~v~PG~v~T~~~~ 314 (399)
.................... ......+...|++||+++.+|++.++++|.. ..||+||+|+||+|+|+|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~ 235 (275)
T d1wmaa1 157 RSETITEEELVGLMNKFVEDTKKGV-HQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 235 (275)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTC-TTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred cccccchhhhccccccchhcccccc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCccc
Confidence 00000000000000000000 0112234567999999999999999999842 35999999999999998543
Q ss_pred cccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhc--CCCCCCCceEEccC
Q 015844 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVS--DPSLTKSGVYWSWN 365 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~--~~~~~~~G~~~~~d 365 (399)
.. ...+|||+|+.+++++. +...+.+|+|+..+
T Consensus 236 ~~------------------~~~~pee~A~~~~~~a~~~~~~~~~~G~~~~~~ 270 (275)
T d1wmaa1 236 PK------------------ATKSPEEGAETPVYLALLPPDAEGPHGQFVSEK 270 (275)
T ss_dssp TT------------------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETT
T ss_pred Cc------------------ccCCHHHHHHHHHHHHcCChhhcCCCeEEEECC
Confidence 21 13489999999999874 33346899999743
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-41 Score=310.39 Aligned_cols=229 Identities=20% Similarity=0.239 Sum_probs=183.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCc--EEEEeecChH---HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKW--HIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~--~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.|++|||||++|||+++|+.|+++|++ .|..+.|+.+ .+.+..+++...+.++.++.||++|.++++++++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 478999999999999999999999973 2334455543 44555666666778999999999999999999988743
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
|++|+||||||.. ....+.+.+.++|+++|++|+.|+++++++++|+|++++ .|+||++||+++..
T Consensus 82 --g~idilvnnag~~-~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~--~G~Iv~isS~~g~~--------- 147 (285)
T d1jtva_ 82 --GRVDVLVCNAGLG-LLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGLM--------- 147 (285)
T ss_dssp --SCCSEEEECCCCC-CCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTS---------
T ss_pred --cchhhhhhccccc-ccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC--CCceEEEechhhcC---------
Confidence 7899999999996 456777899999999999999999999999999999876 58999999999885
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
+.++...|++||+|+++|+++|+.|+ ++.||+||+|+||+|+|+++.......
T Consensus 148 --------------------------~~~~~~~Y~asKaal~~l~~~la~El-~~~gIrVn~V~PG~v~T~~~~~~~~~~ 200 (285)
T d1jtva_ 148 --------------------------GLPFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFMEKVLGSP 200 (285)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC-------CCH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCCChHHHHhccCH
Confidence 55778899999999999999999999 677999999999999998654321110
Q ss_pred h-----------hhhc---hhhHHHHhcCCCChHHHHHHHHHhhcCCCC
Q 015844 321 F-----------RLLF---PPFQKYITKGYVSEDEAGKRLAQVVSDPSL 355 (399)
Q Consensus 321 ~-----------~~~~---~~~~~~~~~~~~~pee~a~~v~~l~~~~~~ 355 (399)
. ..+. ......+.++..+|||+|+.+++++..+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~~v~~~~~~~~p 249 (285)
T d1jtva_ 201 EEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKP 249 (285)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSSC
T ss_pred HHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHhCCCC
Confidence 0 0011 112334556788999999999999987653
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-40 Score=297.93 Aligned_cols=237 Identities=22% Similarity=0.217 Sum_probs=197.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+++||++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++. .......+|+.+.+.++.....+....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLG---NNCVFAPADVTSEKDVQTALALAKGKF 77 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC---CCccccccccccccccccccccccccc
Confidence 68999999999999999999999999996 99999999988888887773 567889999999999999999999888
Q ss_pred CCccEEEecCcccCCC-----CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC----CCCceEEEEeccccccCC
Q 015844 163 RPLDVLVCNAAVYLPT-----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 163 g~id~lv~nAg~~~~~-----~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~----~~~g~iV~vSS~~~~~~~ 233 (399)
+.+|.+++|+++.... .++.+.+.++|++++++|+.+++++++++.|+|..+. .++|+||++||..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~-- 155 (248)
T d2o23a1 78 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE-- 155 (248)
T ss_dssp SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH--
T ss_pred ccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc--
Confidence 8999999998875432 3445678899999999999999999999999987642 2358999999999875
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.+++.+|++||+|+++|++.|+.|+ +++|||||+|+||+|+|++.
T Consensus 156 ---------------------------------~~~~~~~Y~asKaal~~lt~~la~e~-~~~gIrvN~I~PG~i~T~~~ 201 (248)
T d2o23a1 156 ---------------------------------GQVGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPLL 201 (248)
T ss_dssp ---------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC--
T ss_pred ---------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCcceeeeccCceecchh
Confidence 45778899999999999999999999 67799999999999999865
Q ss_pred ccccchhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 314 FREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
.. ... ........+.|+ +|+.+|||+|++++||+++ .|+||+.|.+
T Consensus 202 ~~-~~~--~~~~~~~~~~pl~~R~g~peevA~~v~fL~s~--~~itGq~I~v 248 (248)
T d2o23a1 202 TS-LPE--KVCNFLASQVPFPSRLGDPAEYAHLVQAIIEN--PFLNGEVIRL 248 (248)
T ss_dssp -----------CHHHHTCSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEE
T ss_pred hc-CCH--HHHHHHHhcCCCCCCCcCHHHHHHHHHHHHhC--CCCCceEeEC
Confidence 33 221 122233344554 7899999999999999974 5899998853
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.3e-39 Score=292.05 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=201.4
Q ss_pred ccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.|+||++|||||++ |||+++|+.|+++|+ +|++++|+++..+.+ +++.....+...+.+|+++..++...++++.+
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRV-EEFAAQLGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHH-HHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHHHhhcCCcceeecccchHHHHHHHHHHhhh
Confidence 47899999999998 899999999999996 899999986544444 33333345667889999999999999999999
Q ss_pred cCCCccEEEecCcccCCCC----CCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~----~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
.++++|++||||+...... ..+....+.|...+++|+.+.+.+++.+.+.+.+. +.||++||..+..
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Ii~iss~~~~~----- 150 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG----SALLTLSYLGAER----- 150 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEEECGGGTS-----
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cEEEEecchhhcc-----
Confidence 9999999999999863221 11235667799999999999999999999988653 5899999988764
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccc
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~ 316 (399)
+.+....|++||+|+++|++.++.|| +++|||||+|+||+|+|++.. .
T Consensus 151 ------------------------------~~~~~~~Y~~sKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~-~ 198 (258)
T d1qsga_ 151 ------------------------------AIPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAAS-G 198 (258)
T ss_dssp ------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGG-G
T ss_pred ------------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-CccCceeeccccccccccccc-c
Confidence 44677889999999999999999999 678999999999999998543 2
Q ss_pred cchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.............+.|.+|+.+|||+|+.++||+++.+.++||+.+.+||.
T Consensus 199 ~~~~~~~~~~~~~~~pl~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG 249 (258)
T d1qsga_ 199 IKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 249 (258)
T ss_dssp STTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cchhhhHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcC
Confidence 333333444556678889999999999999999999999999999999995
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=7.9e-39 Score=294.43 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=196.6
Q ss_pred ccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.|+||++|||||+| |||+++|+.|+++|+ +|++++|+++ +++..+++...+....++.+|++++++++++++++.+
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence 47899999999765 999999999999996 9999999854 3344455544566777899999999999999999999
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhh---hHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGF---ELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~---~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
.+|++|++|||+|.............+.+ ...+.++..+.+.+.+...+.+ + .++.|+++||.+...
T Consensus 80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~s~~~~~~------ 149 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLL---N-NGASVLTLSYLGSTK------ 149 (274)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE---E-EEEEEEEEECGGGTS------
T ss_pred HcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccc---c-cCcceeeeccccccc------
Confidence 99999999999998644322323222333 3333333333333333333222 1 123455555554442
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
+.+....|+++|+|+.+|++.++.|+ ++.|||||+|+||+++|++.. ..
T Consensus 150 -----------------------------~~~~~~~y~asK~al~~ltr~lA~e~-~~~GIrvN~I~PG~v~T~~~~-~~ 198 (274)
T d2pd4a1 150 -----------------------------YMAHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASS-GI 198 (274)
T ss_dssp -----------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGG-GS
T ss_pred -----------------------------ccccchhhhHHHHHHHHHHHhhHHHh-cCcCceecccccCcccCcccc-cc
Confidence 34566789999999999999999999 678999999999999998543 23
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCCcccccccCcccCCHHHHHHHHHHHHH
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEK 394 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~~~~~~~~~~~~~~~~~~~~lw~~~~~ 394 (399)
..............+.+|+.+|+|+|+.++||+++.+.++||+.|.+||... ..-.......++.+..||.++++
T Consensus 199 ~~~~~~~~~~~~~~p~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~~--~~g~~~~~~~~~~~~~~~~~~~~ 273 (274)
T d2pd4a1 199 ADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH--VMGMGAVEEKDNKATLLWDLHKE 273 (274)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG--GBSSCCCTTCTTTTCCHHHHSSC
T ss_pred CchHHHHHHHhhhhhccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCChh--hccCCcccccccchhhhhhhhcc
Confidence 3323333445556778999999999999999999999999999999999642 23445556666778999998764
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=3.6e-38 Score=291.47 Aligned_cols=238 Identities=15% Similarity=0.104 Sum_probs=184.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec-ChHHHHHHHHHhccC-CCcEEE-----------------EEecCCC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYTI-----------------MHLDLAS 147 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r-~~~~~~~~~~~~~~~-~~~~~~-----------------~~~Dvs~ 147 (399)
.++|||||++|||+++|+.|+++|+ +|++++| +.+..+.+.+++... +..... +.+|+++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence 3899999999999999999999997 7777654 566667666666432 233333 4566999
Q ss_pred HHHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhh--------------HhhhchhhHHHHHHHHHHHHHhh
Q 015844 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE--------------LSVGTNHLGHFLLSRLLLDDLKQ 213 (399)
Q Consensus 148 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~--------------~~~~~N~~g~~~l~~~~~~~l~~ 213 (399)
.++++++++++.+++|+||+||||||+.. ..++.+.+.++|+ .+|.+|+.+++++++.+.+.+..
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccC-CCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 99999999999999999999999999974 4556666666554 47899999999999999887643
Q ss_pred C----CCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHH
Q 015844 214 S----DYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFH 289 (399)
Q Consensus 214 ~----~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la 289 (399)
. ....++||+++|..... +.+++.+|++||+|+++|++.|+
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~-----------------------------------~~~~~~~Y~asKaal~~lt~~lA 205 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQ-----------------------------------PLLGYTIYTMAKGALEGLTRSAA 205 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCcccccccccccC-----------------------------------CccceeeeccccccchhhhHHHH
Confidence 2 12357899998887663 45678899999999999999999
Q ss_pred HhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHh-cCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 290 RRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 290 ~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.|| +++|||||+|+||++.+... ..+ ........+.|+ +|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 206 ~el-~~~gIrvN~I~PG~t~~~~~---~~~--~~~~~~~~~~pl~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG 278 (284)
T d1e7wa_ 206 LEL-APLQIRVNGVGPGLSVLVDD---MPP--AVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG 278 (284)
T ss_dssp HHH-GGGTEEEEEEEESSBCCGGG---SCH--HHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHh-CCcccccccccccccccccc---CCH--HHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcC
Confidence 999 67799999999999765422 111 122233344554 8899999999999999999999999999999995
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=7.2e-39 Score=301.96 Aligned_cols=244 Identities=10% Similarity=0.071 Sum_probs=189.7
Q ss_pred CCCEEEEEc--CCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-C-----------CCcEEEEE--------
Q 015844 85 RKGSVIITG--ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-A-----------KENYTIMH-------- 142 (399)
Q Consensus 85 ~~k~~lVTG--~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-~-----------~~~~~~~~-------- 142 (399)
.+|++|||| +++|||+++|+.|+++|| +|++++++............. . ........
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhh
Confidence 378999999 568999999999999997 899988876543333222110 0 01122333
Q ss_pred ------------ecCCCHHHHHHHHHHHHHcCCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHHHHHH
Q 015844 143 ------------LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (399)
Q Consensus 143 ------------~Dvs~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 209 (399)
+|+++.++++++++.+.+.+|+||+||||||.... ..++.+++.++|+++|++|+++.+.++|+++|
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~ 159 (329)
T d1uh5a_ 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence 36778888999999999999999999999997643 24677889999999999999999999999999
Q ss_pred HHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCh-hhhHHHhHHHHHHHHHHH
Q 015844 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEF 288 (399)
Q Consensus 210 ~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~l 288 (399)
+|++ +|+||++||.++.. ++++ ...|++||+|+++|++.|
T Consensus 160 ~m~~----~GsIv~iss~~~~~-----------------------------------~~p~y~~~y~asKaal~~ltr~l 200 (329)
T d1uh5a_ 160 IMKP----QSSIISLTYHASQK-----------------------------------VVPGYGGGMSSAKAALESDTRVL 200 (329)
T ss_dssp GEEE----EEEEEEEECGGGTS-----------------------------------CCTTCTTTHHHHHHHHHHHHHHH
T ss_pred hccc----ccccccceeehhcc-----------------------------------cccccchhhhhhhccccccchhh
Confidence 9976 37999999988764 2333 457999999999999999
Q ss_pred HHhhccCCceEEEEeeCCcccCCCCcc------------------------------------------ccchhhhhhch
Q 015844 289 HRRFHEETGIAFASLYPGCIATTGLFR------------------------------------------EHIPLFRLLFP 326 (399)
Q Consensus 289 a~~~~~~~gi~v~~v~PG~v~T~~~~~------------------------------------------~~~~~~~~~~~ 326 (399)
+.||..++|||||+|+||+|+|++... ...........
T Consensus 201 A~Ela~~~gIRVNaI~PG~i~T~a~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (329)
T d1uh5a_ 201 AYHLGRNYNIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEY 280 (329)
T ss_dssp HHHHHHHHCCEEEEEEECCCCCTTGGGCC------------------------------------------CHHHHHHHH
T ss_pred HHHHhcccCcEEEEEecCcccchhhhcccchhhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHHH
Confidence 999942369999999999999942110 00001112223
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 327 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 327 ~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
.....|++|+.+|||+|..++||+|+.+.++||+.|.+||..
T Consensus 281 ~~~~~Pl~R~~~pedvA~~v~fLaSd~s~~iTGq~i~VDGG~ 322 (329)
T d1uh5a_ 281 SEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGL 322 (329)
T ss_dssp HHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HhccCCCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECCCc
Confidence 344567899999999999999999999999999999999963
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=5.6e-38 Score=292.02 Aligned_cols=248 Identities=15% Similarity=0.088 Sum_probs=193.6
Q ss_pred ccccCCCEEEEEcCCC--hHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc---------CCC--c-EEEEEec--
Q 015844 81 KKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------AKE--N-YTIMHLD-- 144 (399)
Q Consensus 81 ~~~l~~k~~lVTG~s~--gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~---------~~~--~-~~~~~~D-- 144 (399)
+++|+||++|||||++ |||+++|+.|+++|| +|++++|+............. .+. . -....+|
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 3589999999999875 999999999999997 999999976443322221110 000 1 1233343
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCCccEEEecCcccCC-CCCCCCCChhhhhHhhhchhhHHHHHHH
Q 015844 145 ------------------LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (399)
Q Consensus 145 ------------------vs~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 205 (399)
.++..+++++++++.+++|+||+||||||.... ..++.+.+.++|++++++|+.+++++++
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 355667789999999999999999999998532 3567788999999999999999999999
Q ss_pred HHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHH
Q 015844 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM 285 (399)
Q Consensus 206 ~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~ 285 (399)
++++.+.+. |+++++++.+.... ..+....|+++|+++..++
T Consensus 162 ~~~~~~~~~----g~~~~~~~~~~~~~----------------------------------~~~~~~~y~~aKaa~~~l~ 203 (297)
T d1d7oa_ 162 HFLPIMNPG----GASISLTYIASERI----------------------------------IPGYGGGMSSAKAALESDT 203 (297)
T ss_dssp HHGGGEEEE----EEEEEEECGGGTSC----------------------------------CTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhhcC----Ccceeeeehhhccc----------------------------------ccccccceecccccccccc
Confidence 999988764 57777777655421 2245668999999999999
Q ss_pred HHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 286 QEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 286 ~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
+.++.++..++|||||+|+||+|+|++... ...............|++|+.+|||+|+.++||+++.+.++||+.|.+|
T Consensus 204 ~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~-~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i~vD 282 (297)
T d1d7oa_ 204 RVLAFEAGRKQNIRVNTISAGPLGSRAAKA-IGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVD 282 (297)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCBCCCSSC-CSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred cccchhccccceEEecccccccccchhhhh-ccCCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceEEEC
Confidence 999999854569999999999999986543 2222233344556678899999999999999999999999999999999
Q ss_pred CCC
Q 015844 366 KDS 368 (399)
Q Consensus 366 g~~ 368 (399)
|..
T Consensus 283 GG~ 285 (297)
T d1d7oa_ 283 NGL 285 (297)
T ss_dssp TTG
T ss_pred cCH
Confidence 964
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-37 Score=281.44 Aligned_cols=220 Identities=19% Similarity=0.223 Sum_probs=188.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++. ..+..+..+.+|+++.+.+..+++.+.+.
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 38999999999999999999999999996 99999999999998877754 34667889999999999999999999999
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
++.+|++|||||.. ....+.+.+.++|++++++|+.|++.+++.++|+|++. +|+||++||.++..
T Consensus 90 ~g~~~~li~nag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~---~G~ii~isS~~~~~---------- 155 (269)
T d1xu9a_ 90 MGGLDMLILNHITN-TSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSLAGKV---------- 155 (269)
T ss_dssp HTSCSEEEECCCCC-CCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGTS----------
T ss_pred hCCccccccccccc-cccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc---CCcceEeccchhcC----------
Confidence 99999999999987 44567788999999999999999999999999999865 38999999999874
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhc-cCCceEEEEeeCCcccCCCCccccchh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
++++...|++||+|+++|+++|+.|+. .+.||+||+|+||+|+|++..+....
T Consensus 156 -------------------------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~~~- 209 (269)
T d1xu9a_ 156 -------------------------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSG- 209 (269)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCG-
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhccC-
Confidence 567889999999999999999999984 24689999999999999854322111
Q ss_pred hhhhchhhHHHHhcCCCChHHHHHHHHHhhcCC
Q 015844 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~ 353 (399)
.+.....+||++|+.++......
T Consensus 210 ----------~~~~~~~~~e~~a~~i~~~~~~~ 232 (269)
T d1xu9a_ 210 ----------IVHMQAAPKEECALEIIKGGALR 232 (269)
T ss_dssp ----------GGGGGCBCHHHHHHHHHHHHHTT
T ss_pred ----------CccccCCCHHHHHHHHHHHhhcC
Confidence 11122468999999988766443
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.4e-37 Score=279.52 Aligned_cols=219 Identities=13% Similarity=0.092 Sum_probs=181.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc--C
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~--~ 162 (399)
+||++|||||++|||+++|+.|+++|+ +|++++++..+ .......+.+|.++.++++.+...+.+. .
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENE----------EASASVIVKMTDSFTEQADQVTAEVGKLLGD 69 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCT----------TSSEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc----------cccccceeecccCcHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999996 99999886532 1234556778889899998888877665 3
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
+++|+||||||.......+.+.+.++|+++|++|+.+++++++.++|+|++ +|+||++||.++..
T Consensus 70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~----~G~Iv~isS~~~~~----------- 134 (236)
T d1dhra_ 70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE----GGLLTLAGAKAALD----------- 134 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGS-----------
T ss_pred CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc----ccceeEEccHHHcC-----------
Confidence 579999999997655556667778999999999999999999999999976 37999999998874
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-CCceEEEEeeCCcccCCCCccccchhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.++...|++||+|+++|+++|+.|+.. ++||+||+|+||+|+|++..... +.
T Consensus 135 ------------------------~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~-~~- 188 (236)
T d1dhra_ 135 ------------------------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSM-PE- 188 (236)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHS-TT-
T ss_pred ------------------------CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhC-cc-
Confidence 4577889999999999999999999942 57999999999999998532211 11
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
....++.+||++|+.+.+|+++...+++|.++.+
T Consensus 189 ---------~~~~~~~~pe~va~~~~~l~s~~~~~i~G~~i~v 222 (236)
T d1dhra_ 189 ---------ADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQV 222 (236)
T ss_dssp ---------SCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred ---------chhhcCCCHHHHHHHHHHHhCCCccCCCCCeEEE
Confidence 1123567899999999999999999999987654
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.5e-36 Score=271.23 Aligned_cols=227 Identities=21% Similarity=0.178 Sum_probs=182.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|++|||||++|||+++|+.|+++|+ +|++++|+++ +.+...+++|+++...+..+.....+... .
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~ 66 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE------------GEDLIYVEGDVTREEDVRRAVARAQEEAP-L 66 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC-E
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc------------cccceEeeccccchhhhHHHHHhhhcccc-c
Confidence 58999999999999999999999996 9999999853 24567889999999999999888777654 5
Q ss_pred cEEEecCcccCCC---CCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC----CCCceEEEEeccccccCCCCCCC
Q 015844 166 DVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 166 d~lv~nAg~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~----~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
+.+++++++.... ......+.+.|++++++|+.+.+.+++.+.+.+.+.. ...|+||++||..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~------- 139 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE------- 139 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH-------
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc-------
Confidence 6666666654321 2333567789999999999999999999999854431 1258999999999875
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
+.++...|++||+|+.+|++.|+.|+ +++|||||+|+||+|+|+++.....
T Consensus 140 ----------------------------~~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~ 190 (241)
T d1uaya_ 140 ----------------------------GQIGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLPE 190 (241)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHTSCH
T ss_pred ----------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-hhcCCceeeecCCcccccccchhhh
Confidence 45778899999999999999999999 6779999999999999985543222
Q ss_pred hhhhhhchhhHHHH-hcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 319 PLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
.. ......+.+ .+|+.+|||+|+.++||+++ .++||+.|.+||.
T Consensus 191 ~~---~~~~~~~~~~~~R~g~pedvA~~v~fL~s~--~~iTG~~i~VDGG 235 (241)
T d1uaya_ 191 KA---KASLAAQVPFPPRLGRPEEYAALVLHILEN--PMLNGEVVRLDGA 235 (241)
T ss_dssp HH---HHHHHTTCCSSCSCCCHHHHHHHHHHHHHC--TTCCSCEEEESTT
T ss_pred hH---HHHHHhcCCCCCCCcCHHHHHHHHHHHHhC--CCCCCCEEEECCc
Confidence 21 112222333 37899999999999999984 5899999999995
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.9e-35 Score=269.14 Aligned_cols=239 Identities=18% Similarity=0.141 Sum_probs=184.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhccC-CCcEEEEEecCCC----HHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMA-KENYTIMHLDLAS----LDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~~~-~~~~~~~~~Dvs~----~~~v~~~~~~~~~ 160 (399)
.++|||||++|||+++|+.|+++|+ +|++++|+.+ ..+++.+++... +.+...+.+|+.+ .+.++++++.+.+
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 3899999999999999999999996 9999998854 456666666433 4567777766644 6778888888889
Q ss_pred cCCCccEEEecCcccCCCCCC----------CCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCC---CCceEEEEecc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKE----------PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---PSKRLIIVGSI 227 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~----------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~---~~g~iV~vSS~ 227 (399)
++|+||+||||||+..+.... .+...+.+...+..|+.+.+...+...+.+..... ..+.+++++|.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 999999999999987443211 12234567788899999999999888877654321 24678888887
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCc
Q 015844 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (399)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~ 307 (399)
.+.. +.+++..|++||+|+++|++.++.++ .++|||||+|+||+
T Consensus 161 ~~~~-----------------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~ 204 (266)
T d1mxha_ 161 MTDL-----------------------------------PLPGFCVYTMAKHALGGLTRAAALEL-APRHIRVNAVAPGL 204 (266)
T ss_dssp GGGS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESS
T ss_pred cccc-----------------------------------cCcchhhhhhhHHHHhhhHHHHHHHh-CccCcEEEEeccCc
Confidence 7653 55788999999999999999999999 67799999999999
Q ss_pred ccCCCCccccchhhhhhchhhHHHHhcC-CCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 308 IATTGLFREHIPLFRLLFPPFQKYITKG-YVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 308 v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
|+|++...+ ........+.|+++ +.+|||+|++++||+++.+.++||+.|.+||.
T Consensus 205 i~t~~~~~~-----~~~~~~~~~~pl~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG 260 (266)
T d1mxha_ 205 SLLPPAMPQ-----ETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 260 (266)
T ss_dssp BSCCSSSCH-----HHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EeccccCCH-----HHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhCCccCCeEEECcc
Confidence 999855332 11122333445544 57999999999999999999999999999995
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=100.00 E-value=6.4e-35 Score=267.22 Aligned_cols=242 Identities=12% Similarity=0.071 Sum_probs=188.2
Q ss_pred ccCCCEEEEEc--CCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITG--ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG--~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.|+||++|||| |++|||+++|+.|+++|| +|++++|+.++..+... +..+.+...++||++++++++.+++.+.+
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~--~~~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRIT--DRLPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHH--TTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHH--HHcCCceeeEeeecccccccccccchhhh
Confidence 57999999999 457999999999999997 99999999776543222 22356677899999999999999998876
Q ss_pred c---CCCccEEEecCcccCC----CCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCC
Q 015844 161 S---GRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (399)
Q Consensus 161 ~---~g~id~lv~nAg~~~~----~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~ 233 (399)
. ++++|++|||+|+... ...+.+.+.++|.+.+++|+.+.+...+...+.+.. +.+++++|.....
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~s~~~~~-- 152 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP-----GGSIVGMDFDPSR-- 152 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-----EEEEEEEECCCSS--
T ss_pred ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccc-----ccccccccccccc--
Confidence 4 5789999999997532 234456788999999999999999999988776543 3455555544432
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCC
Q 015844 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~ 313 (399)
+.+....|+++|+|+.+|++.++.|+ .+.|||||+|+||+|+|++.
T Consensus 153 ---------------------------------~~p~~~~y~~sK~a~~~ltr~lA~e~-~~~gIrVN~V~PG~v~T~~~ 198 (268)
T d2h7ma1 153 ---------------------------------AMPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLAM 198 (268)
T ss_dssp ---------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHHH
T ss_pred ---------------------------------cCcccchhhccccchhhccccchhhh-hccCCcceEEecCCCCChhh
Confidence 44678899999999999999999999 67799999999999999854
Q ss_pred cccc----ch----hhhhh-chhhHHHHhcC-CCChHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 015844 314 FREH----IP----LFRLL-FPPFQKYITKG-YVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 368 (399)
Q Consensus 314 ~~~~----~~----~~~~~-~~~~~~~~~~~-~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~~ 368 (399)
..-. .. ..... .....+.|+++ +.+|+|+|+.++||+++.+.++||+.|.+||..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~ 263 (268)
T d2h7ma1 199 SAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGA 263 (268)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTG
T ss_pred hhhccchhhhhhccchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCc
Confidence 2111 00 00111 11223345544 889999999999999999999999999999964
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1e-35 Score=267.18 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=175.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH--cCC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--SGR 163 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~--~~g 163 (399)
.++||||||++|||+++|+.|+++|+ +|++++|++.+. ......+.+|+.+.+......+.+.. .++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 70 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQ----------ADSNILVDGNKNWTEQEQSILEQTASSLQGS 70 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTT----------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhc----------ccccceeccccCchhHHHHHHHHHHHHhcCC
Confidence 34679999999999999999999995 999999986421 12345667889888888877777666 468
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+||+||||||+.....++.+.+.++|+.++++|+.++++++++++|+|++ +|+||++||..+..
T Consensus 71 ~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~----~g~Iv~isS~~~~~------------ 134 (235)
T d1ooea_ 71 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP----GGLLQLTGAAAAMG------------ 134 (235)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGS------------
T ss_pred CeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhccccccc----ceEEEEeccHHhcC------------
Confidence 99999999998655455556667889999999999999999999999976 37999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-CCceEEEEeeCCcccCCCCccccchhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
+.+++.+|++||+|+.+|+++|+.|+.. ..+|+||+|+||+++|++.... .+.
T Consensus 135 -----------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~-~~~-- 188 (235)
T d1ooea_ 135 -----------------------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKW-MPN-- 188 (235)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHH-STT--
T ss_pred -----------------------CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhh-CcC--
Confidence 5578899999999999999999999842 4699999999999999854321 111
Q ss_pred hhchhhHHHHhcCCCChHHHHHHHHHhhcC-CCCCCCceEEcc
Q 015844 323 LLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSW 364 (399)
Q Consensus 323 ~~~~~~~~~~~~~~~~pee~a~~v~~l~~~-~~~~~~G~~~~~ 364 (399)
....++.+|+++++.+++++.. ....++|+++.+
T Consensus 189 --------~~~~~~~~~~~va~~~~~~l~~~~~~~~tG~~i~v 223 (235)
T d1ooea_ 189 --------ADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKI 223 (235)
T ss_dssp --------CCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEE
T ss_pred --------CccccCCCHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 1123567999999998765554 555799999987
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=6.7e-34 Score=258.73 Aligned_cols=243 Identities=19% Similarity=0.202 Sum_probs=165.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc-CCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~g~i 165 (399)
|++|||||++|||+++|+.|+++|+ +|++++|+.++ ..+|+.+.+..+....++..+ .+.+
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~~-----------------~~~d~~~~~~~~~~~~~~~~~~~~~i 63 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAE-----------------VIADLSTAEGRKQAIADVLAKCSKGM 63 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSS-----------------EECCTTSHHHHHHHHHHHHTTCTTCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChHH-----------------HHHHhcCHHHHHHHHHHHHHHhCCCC
Confidence 7999999999999999999999996 89999987431 357999999988877666554 4679
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|++|||||+.. ..+.|.....+|+.+...+.+...+.+.+... ..+.++++.....-..... + ...
T Consensus 64 d~lv~~Ag~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~---~~~ 129 (257)
T d1fjha_ 64 DGLVLCAGLGP--------QTKVLGNVVSVNYFGATELMDAFLPALKKGHQ--PAAVVISSVASAHLAFDKN-P---LAL 129 (257)
T ss_dssp SEEEECCCCCT--------TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS--CEEEEECCGGGGSSCGGGC-T---THH
T ss_pred cEEEEcCCCCC--------cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--Ccceeeeeccccchhhhhh-h---hhh
Confidence 99999999752 23557888999999999999999998887653 4666666554332000000 0 000
Q ss_pred ccccccCCCCCCCCCC-CCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 246 DLRGFAGGLNGLNSSS-MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
....+ ....... .......++..+|++||+|+++|+|+|+.|| +++|||||+|+||+|+|+++...... ....
T Consensus 130 ---~~~~g-~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~-~~~~ 203 (257)
T d1fjha_ 130 ---ALEAG-EEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQD-PRYG 203 (257)
T ss_dssp ---HHHHT-CHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC-----------------
T ss_pred ---hccCC-cEEEEeeehhccCCCcchHHHHHHhhhhhcccccccccc-ccccccccccccCCcCChhHHhhcCC-HHHH
Confidence 00000 0000000 0000123456789999999999999999999 67799999999999999865432211 1111
Q ss_pred chhhH-HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 015844 325 FPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 367 (399)
Q Consensus 325 ~~~~~-~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg~ 367 (399)
..... ..|++|+.+|||+|+.++||+++.+.++||+.|.+||.
T Consensus 204 ~~~~~~~~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 204 ESIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp -----CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHhcCCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCC
Confidence 11122 24789999999999999999999999999999999995
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.97 E-value=2.4e-31 Score=242.01 Aligned_cols=224 Identities=18% Similarity=0.214 Sum_probs=172.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++|||||||++|||+++|++|+++|+.+|++++|+. +..++..+++...+.++.++.||++|.++++++++.+.+.
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 5679999999999999999999999986799999874 3456666777777889999999999999999999987654
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
+++|+||||+|+. ...++.+.+.++|+.++++|+.|++++.+.+. ..+ .++||++||+++..
T Consensus 88 -~~i~~vv~~ag~~-~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~----~~~--~~~iv~~SS~a~~~---------- 149 (259)
T d2fr1a1 88 -VPLSAVFHAAATL-DDGTVDTLTGERIERASRAKVLGARNLHELTR----ELD--LTAFVLFSSFASAF---------- 149 (259)
T ss_dssp -SCEEEEEECCCCC-CCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHT----TSC--CSEEEEEEEHHHHT----------
T ss_pred -ccccccccccccc-cccccccccHHHHHHHhhhhccchhHHHHHhh----ccC--CceEeeecchhhcc----------
Confidence 5899999999997 45678889999999999999999999887643 222 47999999999986
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
+.+++..|+++|++++.|++.++. .|+++++|+||.+.++++......
T Consensus 150 -------------------------g~~~~~~YaAaka~l~~la~~~~~-----~Gi~v~~I~pg~~~~~g~~~~~~~-- 197 (259)
T d2fr1a1 150 -------------------------GAPGLGGYAPGNAYLDGLAQQRRS-----DGLPATAVAWGTWAGSGMAEGPVA-- 197 (259)
T ss_dssp -------------------------CCTTCTTTHHHHHHHHHHHHHHHH-----TTCCCEEEEECCBC------------
T ss_pred -------------------------CCcccHHHHHHHHhHHHHHHHHHh-----CCCCEEECCCCcccCCccccchHH--
Confidence 446788999999999988776654 399999999999987766442211
Q ss_pred hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 322 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
..+ .+. .-..++|+++++.+..++..... ...+++.|
T Consensus 198 ~~~----~~~-G~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~d 234 (259)
T d2fr1a1 198 DRF----RRH-GVIEMPPETACRALQNALDRAEV--CPIVIDVR 234 (259)
T ss_dssp --C----TTT-TEECBCHHHHHHHHHHHHHTTCS--SCEECEEC
T ss_pred HHH----Hhc-CCCCCCHHHHHHHHHHHHhCCCc--eEEEEeCc
Confidence 111 111 11246899999999998877543 34444444
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=4.8e-19 Score=167.50 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=151.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-----HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-----KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|+||||||+|.||..++++|++.| +.|+.++|... +.+...........++.++++|++|.++++++++.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--- 77 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc---
Confidence 789999999999999999999999 69999998532 223332222233467899999999999999999875
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCC
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (399)
.+|+++|+|+..... .+.++.+..+++|+.|+.++++++...-.+. ..+||++||...+ |..
T Consensus 78 --~~d~v~h~aa~~~~~-----~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~---~~r~i~~SS~~vY-G~~------- 139 (357)
T d1db3a_ 78 --QPDEVYNLGAMSHVA-----VSFESPEYTADVDAMGTLRLLEAIRFLGLEK---KTRFYQASTSELY-GLV------- 139 (357)
T ss_dssp --CCSEEEECCCCCTTT-----TTTSCHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGG-TTC-------
T ss_pred --CCCEEEEeecccccc-----hhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC---CcEEEEEEchhhh-CCC-------
Confidence 699999999986432 2446667789999999999999886543322 2489999997643 210
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh
Q 015844 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 321 (399)
...+..|..+..+...|+.||.+.+.+++.+++.+ ++.+..+.|+.|..|........
T Consensus 140 ----------------~~~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~----~l~~~ilR~~~vyGp~~~~~~~~-- 197 (357)
T d1db3a_ 140 ----------------QEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPRRGETFVT-- 197 (357)
T ss_dssp ----------------CSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHH--
T ss_pred ----------------CCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEEeccccCCCCCcCCCc--
Confidence 01122333344556789999999999999888776 79999999999888743221111
Q ss_pred hhhchhhHHH--------------HhcCCCChHHHHHHHHHhhcCC
Q 015844 322 RLLFPPFQKY--------------ITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 322 ~~~~~~~~~~--------------~~~~~~~pee~a~~v~~l~~~~ 353 (399)
..+...+... ..+-++..+|+++++..++...
T Consensus 198 ~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~ 243 (357)
T d1db3a_ 198 RKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE 243 (357)
T ss_dssp HHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCC
Confidence 1111111110 0112567999999998887653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.75 E-value=8.8e-20 Score=157.03 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=94.8
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++... .++....+|++|.+++++++
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~------ 90 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR-FKVNVTAAETADDASRAEAV------ 90 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH-HTCCCEEEECCSHHHHHHHT------
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhc-cchhhhhhhcccHHHHHHHh------
Confidence 489999999999999999999999999996 9999999999988888877543 24456889999999888765
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHH
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 208 (399)
+++|+||||||+.. ..++.++|+..+++|+.+.+++...+.
T Consensus 91 -~~iDilin~Ag~g~-----~~~~~e~~~~~~~~nv~~~~~~~~~~~ 131 (191)
T d1luaa1 91 -KGAHFVFTAGAIGL-----ELLPQAAWQNESSIEIVADYNAQPPLG 131 (191)
T ss_dssp -TTCSEEEECCCTTC-----CCBCHHHHHTCTTCCEEEECCCSSSCS
T ss_pred -cCcCeeeecCcccc-----ccCCHHHHHhhhcceeehhHhhHHHHH
Confidence 47999999999742 256899999999999988877655443
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.9e-16 Score=148.15 Aligned_cols=179 Identities=15% Similarity=0.062 Sum_probs=129.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+|||||+|.||..+++.|+++| +.|++++|.. .......+.+. ..++.++++|++|.+.+.++++.. +
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~-----~ 73 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDH-----A 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHT-----T
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhcc-----C
Confidence 49999999999999999999999 5999887621 11111122221 347889999999999998888753 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|+|||+|+.... ..+.++....+++|+.|+.++++++...-. .++|++||.+.+.+....
T Consensus 74 ~d~ViHlAa~~~~-----~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v------~~~i~~Ss~~vy~~~~~~-------- 134 (338)
T d1udca_ 74 IDTVIHFAGLKAV-----GESVQKPLEYYDNNVNGTLRLISAMRAANV------KNFIFSSSATVYGDQPKI-------- 134 (338)
T ss_dssp CSEEEECCSCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHTC------CEEEEEEEGGGGCSCCSS--------
T ss_pred CCEEEECCCccch-----hhHHhCHHHHHHhHHHHHHHHHHHHHHhCC------CEEEecCcceEEcccccc--------
Confidence 9999999996421 124456678999999999999998876532 389999987765311100
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
....+.....+...|+.+|.+.+.+.+....+. .++.+..++|+.|-++
T Consensus 135 ---------------~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~ 183 (338)
T d1udca_ 135 ---------------PYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGA 183 (338)
T ss_dssp ---------------SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECC
T ss_pred ---------------ccccccccCCCcchHHHHHhhhhHHHHHHHhhc---cCCeEEEEeeccEEec
Confidence 000111233457789999999999888777664 4889989999888765
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.4e-16 Score=146.71 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=149.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-----HHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-----KAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-----~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
|++|||||+|.||.++++.|.++| +.|+.++|... ..+....... ....++.++.+|++|.+.+.++++..
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 78 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-- 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc--
Confidence 345999999999999999999999 59999988532 1111111111 11246899999999999999998865
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
.+++++|.++.... ..+.+.....+++|+.|+.++++++..+.... ..++|++||.+.+ |..
T Consensus 79 ---~~~~v~~~~a~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~---~~~~i~~SS~~vy-g~~------ 140 (347)
T d1t2aa_ 79 ---KPTEIYNLGAQSHV-----KISFDLAEYTADVDGVGTLRLLDAVKTCGLIN---SVKFYQASTSELY-GKV------ 140 (347)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGT-CSC------
T ss_pred ---ccceeeeeeecccc-----chhhccchhhhhhHHHHHHHHHHHHHHcCCCC---CcEEEEecchhee-cCC------
Confidence 68899998886422 12445666778999999999999887654332 2489999987643 210
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
...+..|..+..+...|+.||.+.+.+++.+++.+ ++.+..++|+.+..|........
T Consensus 141 -----------------~~~~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~----~~~~~ilr~~~vyGp~~~~~~~~- 198 (347)
T d1t2aa_ 141 -----------------QEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPRRGANFVT- 198 (347)
T ss_dssp -----------------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHH-
T ss_pred -----------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCCCCCCccc-
Confidence 01122333455567789999999999998888775 78999999988877632211110
Q ss_pred hhhhchhhHHH--------------HhcCCCChHHHHHHHHHhhcCCC
Q 015844 321 FRLLFPPFQKY--------------ITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 321 ~~~~~~~~~~~--------------~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
......+... ..+.++..+|+++++..++....
T Consensus 199 -~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~ 245 (347)
T d1t2aa_ 199 -RKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE 245 (347)
T ss_dssp -HHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS
T ss_pred -cccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcCC
Confidence 1111111000 01235688999999998887643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.69 E-value=1.4e-16 Score=149.30 Aligned_cols=244 Identities=14% Similarity=0.070 Sum_probs=153.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc--cCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+||+||||||+|.||.++++.|+++| +.|+.+.|+..+......... ........+..|++|.+++.+++.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 82 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK------ 82 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT------
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc------
Confidence 48999999999999999999999999 599999998766555433221 222344567789999987766553
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC--
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP-- 240 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~-- 240 (399)
.+|+++|+++.... . ......+.+|+.|+.++++.+..... -.+||++||.....+........
T Consensus 83 -~~~~v~~~a~~~~~-----~---~~~~~~~~~nv~gt~~ll~~~~~~~~-----v~~~i~~SS~~~~~~~~~~~~~~~~ 148 (342)
T d1y1pa1 83 -GAAGVAHIASVVSF-----S---NKYDEVVTPAIGGTLNALRAAAATPS-----VKRFVLTSSTVSALIPKPNVEGIYL 148 (342)
T ss_dssp -TCSEEEECCCCCSC-----C---SCHHHHHHHHHHHHHHHHHHHHTCTT-----CCEEEEECCGGGTCCCCTTCCCCEE
T ss_pred -cchhhhhhcccccc-----c---ccccccccchhhhHHHHHHhhhcccc-----cccccccccceeeccCCCCCCCccc
Confidence 68999999987522 1 22345678899999999888765311 24899999986654221111000
Q ss_pred -CCCc--cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 241 -KANL--GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 241 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
...+ ..... .....+..+..+...|+.||.+.+.+++.+++.. ..++++.+|+|+.+-.+......
T Consensus 149 ~e~~~~~~~~~~---------~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~~~i~p~~v~Gp~~~~~~ 217 (342)
T d1y1pa1 149 DEKSWNLESIDK---------AKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN--KPHFTLNAVLPNYTIGTIFDPET 217 (342)
T ss_dssp CTTCCCHHHHHH---------HHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH--CCSSEEEEEEESEEECCCSCTTT
T ss_pred cccccccccccc---------cccccccCCCCCcCcccchhHhHHHHHHHhhhhc--ccccccceecccceeCCCCCccc
Confidence 0000 00000 0011222345567889999999999999988875 34789999999988776332211
Q ss_pred ch-h-hhhhch--------hhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 318 IP-L-FRLLFP--------PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 318 ~~-~-~~~~~~--------~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
.. . ...... .........++.++|+|++++.++..+. ..|.++
T Consensus 218 ~~~~~~~~~~~l~~g~~~~~~~~~~~~~~v~v~Dva~~~i~~l~~~~--~~g~~~ 270 (342)
T d1y1pa1 218 QSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ--IERRRV 270 (342)
T ss_dssp CCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTT--CCSCEE
T ss_pred cccchHHHHHHHHcCCcCcccCCccceeeeeHHHHHHHHHHhhcCcc--ccceEE
Confidence 11 0 001100 0011111225778999999887776643 345444
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.69 E-value=5.6e-16 Score=146.33 Aligned_cols=235 Identities=13% Similarity=0.160 Sum_probs=152.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHH-HHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
+||||||+|.||.+++++|++.|...|+.+++..... ......+ ....++.++.+|++|.+.+.++++.. .+|
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~d 75 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI-SESNRYNFEHADICDSAEITRIFEQY-----QPD 75 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhh-hhcCCcEEEEccCCCHHHHHHHHHhC-----CCC
Confidence 5899999999999999999999964455555422110 0001111 11357899999999999999988764 699
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCC---CCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~---~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
+|||+|+.... ..+.++....+++|+.|+.++.+.+........ ....+||++||...+.........
T Consensus 76 ~VihlAa~~~~-----~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~---- 146 (361)
T d1kewa_ 76 AVMHLAAESHV-----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEV---- 146 (361)
T ss_dssp EEEECCSCCCH-----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGS----
T ss_pred EEEECccccch-----hhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCcc----
Confidence 99999986422 224456678899999999999999987654310 002489999998765311000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc-chhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPLFR 322 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~ 322 (399)
-.........+..+..+...|+.||.+.+.+++.++..+ |+.+.+++|+.|-.|....+. .+ .
T Consensus 147 ----------~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~----~i~~~~lR~~~vyGp~~~~~~~i~--~ 210 (361)
T d1kewa_ 147 ----------ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYHFPEKLIP--L 210 (361)
T ss_dssp ----------CTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCCTTSHHH--H
T ss_pred ----------ccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEecCceECcCCCcCcHHH--H
Confidence 000000111123344566789999999999999998775 899999999999887443221 11 1
Q ss_pred hhchhhHHHH---------hcCCCChHHHHHHHHHhhcCC
Q 015844 323 LLFPPFQKYI---------TKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 323 ~~~~~~~~~~---------~~~~~~pee~a~~v~~l~~~~ 353 (399)
.+......-+ .+.++..+|+|+++..++...
T Consensus 211 ~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~ 250 (361)
T d1kewa_ 211 VILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEG 250 (361)
T ss_dssp HHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcC
Confidence 1111111100 012468999999999988764
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=3e-16 Score=147.29 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=128.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh----HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~----~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
|+||||||+|.||.+++++|+++| +.|+++++.. ...... ..+ ...++.++.+|++|.+.++.++...
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~~~~~~~~~~~~-~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~---- 73 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARL-EVL--TKHHIPFYEVDLCDRKGLEKVFKEY---- 73 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHH-HHH--HTSCCCEEECCTTCHHHHHHHHHHS----
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECCCCcchhHHHhH-Hhh--cccCCeEEEeecCCHHHHHHHHhcc----
Confidence 689999999999999999999999 5898886521 111111 112 1346788999999999999888753
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
++|+|||+|+.... ....+.....+.+|+.|+.++++++...-. .++|++||...+......
T Consensus 74 -~~d~VihlAa~~~~-----~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i------~~~i~~SS~~vyg~~~~~------ 135 (347)
T d1z45a2 74 -KIDSVIHFAGLKAV-----GESTQIPLRYYHNNILGTVVLLELMQQYNV------SKFVFSSSATVYGDATRF------ 135 (347)
T ss_dssp -CCCEEEECCSCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHHTC------CEEEEEEEGGGGCCGGGS------
T ss_pred -CCCEEEEccccccc-----cccccCcccccccchhhhHHHHHHHHhccc------ceEEeecceeeecCcccC------
Confidence 69999999997532 113345567888999999999999865432 389999998765311100
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccC
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T 310 (399)
....+..+..+..+...|+.||.+.+.+.+.+.... ..++.+..+.|+.|-.
T Consensus 136 --------------~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~~~lR~~~v~g 187 (347)
T d1z45a2 136 --------------PNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD--KKSWKFAILRYFNPIG 187 (347)
T ss_dssp --------------TTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS--TTSCEEEEEEECEEEC
T ss_pred --------------CCCCccccccCCCCCChhHhHHHHHHHHHHHHHHhh--ccCCcEEEEeecceEe
Confidence 011112233344556789999999999988887653 3578888888766543
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.68 E-value=9.9e-16 Score=141.86 Aligned_cols=221 Identities=13% Similarity=0.040 Sum_probs=148.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHH-HHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|+||||||+|.||.++++.|+++| +.|+.++|..... ....+.+. ...++.++.+|++|.+.+.+++... ..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 73 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA-----QP 73 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcccHHHHHHhc-ccCCcEEEEccccChHHhhhhhccc-----cc
Confidence 689999999999999999999999 6999998864221 11122222 1246899999999999999888765 57
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
++++++|+..... ...+.....+.+|+.|+.++++++...-.+ .+|++.||.. ..+...
T Consensus 74 ~~~~~~a~~~~~~-----~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~-----~~~i~~Ss~~-~~~~~~---------- 132 (321)
T d1rpna_ 74 QEVYNLAAQSFVG-----ASWNQPVTTGVVDGLGVTHLLEAIRQFSPE-----TRFYQASTSE-MFGLIQ---------- 132 (321)
T ss_dssp SEEEECCSCCCHH-----HHTTSHHHHHHHHTHHHHHHHHHHHHHCTT-----SEEEEEEEGG-GGCSCS----------
T ss_pred ccccccccccccc-----ccccchHHHHhhhhhchHHHHHHHHHhCCC-----cccccccchh-hcCccc----------
Confidence 7888888764221 133456788999999999999988765332 2666666644 332211
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhc
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~ 325 (399)
.....|..+..+...|+.+|.+.+.+++.+..++ ++++.++.|+.+..|........ ..+.
T Consensus 133 -------------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lr~~~vyGp~~~~~~~~--~~i~ 193 (321)
T d1rpna_ 133 -------------AERQDENTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLRGIEFVT--RKVT 193 (321)
T ss_dssp -------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHH--HHHH
T ss_pred -------------CCCCCCCCCccccChhHHHHHHHHHHHHHHHhhc----CCcEEEEEEecccCCCccccccH--HHHH
Confidence 0111233345567789999999999998888775 78999999988877633222111 1111
Q ss_pred hhhHHH--------------HhcCCCChHHHHHHHHHhhcCCC
Q 015844 326 PPFQKY--------------ITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 326 ~~~~~~--------------~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
..+.+. ..+.++..+|+|+.+..++..+.
T Consensus 194 ~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~ 236 (321)
T d1rpna_ 194 DAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK 236 (321)
T ss_dssp HHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCC
Confidence 111110 01125788999999999887653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=1.8e-15 Score=144.37 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=130.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH----------------HHHHHHHHh-ccCCCcEEEEEecCCCH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL----------------KAERAAKSA-GMAKENYTIMHLDLASL 148 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~----------------~~~~~~~~~-~~~~~~~~~~~~Dvs~~ 148 (399)
|++||||||+|.||.+++++|++.| +.|++++.-.. ...+..... ...+.++.++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 6789999999999999999999999 69988752100 011111111 11245789999999999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+.++++++.. ++|+|||.|+..... ....+.+.....+.+|+.|+.++++.+...-.+ .++++.||..
T Consensus 80 ~~l~~~~~~~-----~~d~ViHlAa~~~~~--~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-----~~~i~~ss~~ 147 (393)
T d1i24a_ 80 EFLAESFKSF-----EPDSVVHFGEQRSAP--YSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEE-----CHLVKLGTMG 147 (393)
T ss_dssp HHHHHHHHHH-----CCSEEEECCSCCCHH--HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----CEEEEECCGG
T ss_pred HHHHHHHHhh-----cchheeccccccccc--cccccccccccccccccccccHHHHHHHHhccc-----cceeeccccc
Confidence 9999999875 699999999875321 112355667788999999999999988765332 2566666655
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
.+. .... +....+.... .+.....+..+..+...|+.||.+.+.+++.++.++ ++++.++.|+.|
T Consensus 148 ~~~-~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----~l~~~~lR~~~v 212 (393)
T d1i24a_ 148 EYG-TPNI--DIEEGYITIT--------HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVV 212 (393)
T ss_dssp GGC-CCSS--CBCSSEEEEE--------ETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred ccc-cccc--cccccccccc--------ccccccccccccccccHHHHHhhhhccccccccccc----ceeeeecccccc
Confidence 432 1100 0000000000 000000011123445679999999999998888775 899999999998
Q ss_pred cCCC
Q 015844 309 ATTG 312 (399)
Q Consensus 309 ~T~~ 312 (399)
..+.
T Consensus 213 ~G~~ 216 (393)
T d1i24a_ 213 YGVK 216 (393)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 8763
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.66 E-value=2.6e-15 Score=140.38 Aligned_cols=232 Identities=13% Similarity=0.037 Sum_probs=152.7
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC----hHHHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----FLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~----~~~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.+.|++|||||+|.||.+++++|.++| +.|+.++|. ............ .....+.++.+|+.|.........
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~-- 90 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA-- 90 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc--
Confidence 355899999999999999999999999 599998762 222222222111 112468899999999987665433
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCC
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (399)
..+.++|.++.... ..+.++....+++|+.|+.++++++...- ..+||++||...+. ..
T Consensus 91 -----~~~~v~~~~a~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~------~~~~i~~SS~~vyg-~~---- 149 (341)
T d1sb8a_ 91 -----GVDYVLHQAALGSV-----PRSINDPITSNATNIDGFLNMLIAARDAK------VQSFTYAASSSTYG-DH---- 149 (341)
T ss_dssp -----TCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHTT------CSEEEEEEEGGGGT-TC----
T ss_pred -----cccccccccccccc-----cccccCccchhheeehhHHHHHHHHHhcC------CceEEEcccceeeC-CC----
Confidence 68888888875422 12567778899999999999999886542 23899999988652 10
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccc
Q 015844 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~ 318 (399)
...+..|..+..+...|+.||.+.+.+++.+++.. ++++..+.|+.|.++.......
T Consensus 150 -------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~v~G~~~~~~~~ 206 (341)
T d1sb8a_ 150 -------------------PGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRRQDPNGA 206 (341)
T ss_dssp -------------------CCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTTCCCCST
T ss_pred -------------------CCCCccCCCCCCCCCcchHHHHHHHHHHHHHHHHh----CCCeEEEEeceeeccCcCCCCc
Confidence 11122333445567789999999999998888775 7999999999888764322211
Q ss_pred h--hh-hhhchhhHHH--H-------hcCCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 319 P--LF-RLLFPPFQKY--I-------TKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 319 ~--~~-~~~~~~~~~~--~-------~~~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
. .. ......+... . .+.++-.+|++.++..++........+.|.
T Consensus 207 ~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~~~~~ 262 (341)
T d1sb8a_ 207 YAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYN 262 (341)
T ss_dssp TCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred hhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhccccccceeee
Confidence 1 11 1111111110 0 122556799999988877654333333443
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=3.4e-15 Score=139.22 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=149.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-----HHHHHHHHhc-cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-----KAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-----~~~~~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
|++|||||+|.||.++++.|+++| +.|+.++|... +...+..... .....+.++.+|+++.+++.+.++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~-- 78 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI-- 78 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh--
Confidence 799999999999999999999999 69999998421 1111111110 11246788999999999999988864
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
++|+|||+|+.... ....+.....+..|+.+..++..++......... ..+++..||..... .
T Consensus 79 ---~~D~Vih~Aa~~~~-----~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~ss~~~~~-~------- 141 (339)
T d1n7ha_ 79 ---KPDEVYNLAAQSHV-----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR-TVKYYQAGSSEMFG-S------- 141 (339)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGGGGT-T-------
T ss_pred ---ccchhhhccccccc-----cccccCccccccccccccchhhhhhhhccccccc-ceeeeecccceecc-c-------
Confidence 79999999997532 1234566788999999999999988765544321 12455555443321 1
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
...+..|..+..+...|+.+|.+.+.++..+.+++ ++.+.+++|+.|-.|........
T Consensus 142 -----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~~~~~~~- 199 (339)
T d1n7ha_ 142 -----------------TPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNHESPRRGENFVT- 199 (339)
T ss_dssp -----------------SCSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHH-
T ss_pred -----------------CCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh----CCCEEEEEEccccCCCCCCCCCc-
Confidence 01122333455677889999999999998888775 89999999999887743221111
Q ss_pred hhhhchhhHHH-------H-------hcCCCChHHHHHHHHHhhcCCC
Q 015844 321 FRLLFPPFQKY-------I-------TKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 321 ~~~~~~~~~~~-------~-------~~~~~~pee~a~~v~~l~~~~~ 354 (399)
..+....... + .+-++..+|+|+.+..++..+.
T Consensus 200 -~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~ 246 (339)
T d1n7ha_ 200 -RKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK 246 (339)
T ss_dssp -HHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS
T ss_pred -chhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCC
Confidence 1111111100 0 1114678999999998887764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=7e-15 Score=127.38 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=127.1
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
|..|+++||||+|+||.+++++|+++| +.|.++.|+..+.... ....+.++.+|++|.+++.++++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~~~~------~~~~~~~~~gD~~d~~~l~~al~------- 66 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE------GPRPAHVVVGDVLQAADVDKTVA------- 66 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCSS------SCCCSEEEESCTTSHHHHHHHHT-------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhcccc------cccccccccccccchhhHHHHhc-------
Confidence 456789999999999999999999999 6999999997663321 12457889999999999887765
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCC
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (399)
..|+||+++|..... +. .+++..++.++++++ ++.+ -.++|++||.......
T Consensus 67 ~~d~vi~~~g~~~~~------~~------~~~~~~~~~~l~~aa----~~~~--v~r~i~~ss~~~~~~~---------- 118 (205)
T d1hdoa_ 67 GQDAVIVLLGTRNDL------SP------TTVMSEGARNIVAAM----KAHG--VDKVVACTSAFLLWDP---------- 118 (205)
T ss_dssp TCSEEEECCCCTTCC------SC------CCHHHHHHHHHHHHH----HHHT--CCEEEEECCGGGTSCT----------
T ss_pred CCCEEEEEeccCCch------hh------hhhhHHHHHHHHHHH----HhcC--CCeEEEEeeeeccCCC----------
Confidence 589999999874221 11 123445555555554 3333 2489999986654210
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhh
Q 015844 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (399)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 323 (399)
....+....|...|...+.+. +..|++...|+||.+...........
T Consensus 119 ---------------------~~~~~~~~~~~~~~~~~e~~l--------~~~~~~~tiirp~~~~~~~~~~~~~~---- 165 (205)
T d1hdoa_ 119 ---------------------TKVPPRLQAVTDDHIRMHKVL--------RESGLKYVAVMPPHIGDQPLTGAYTV---- 165 (205)
T ss_dssp ---------------------TCSCGGGHHHHHHHHHHHHHH--------HHTCSEEEEECCSEEECCCCCSCCEE----
T ss_pred ---------------------ccccccccccchHHHHHHHHH--------HhcCCceEEEecceecCCCCcccEEE----
Confidence 011233456677766644332 23489999999999854312111100
Q ss_pred hchhhHHHHhcCCCChHHHHHHHHHhhcCCC
Q 015844 324 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~ 354 (399)
. ........+++.+|+|+.++.++.++.
T Consensus 166 ~---~~~~~~~~~i~~~DvA~~~~~~l~~~~ 193 (205)
T d1hdoa_ 166 T---LDGRGPSRVISKHDLGHFMLRCLTTDE 193 (205)
T ss_dssp E---SSSCSSCSEEEHHHHHHHHHHTTSCST
T ss_pred e---eCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 0 000112235789999999999998765
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3.8e-15 Score=139.23 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=152.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
+||||||+|.||.+++++|+++|...|+.+++......... ...++.++.+|+++.+++.+.+.+ .+|+
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-----~~~~~~~i~~Di~~~~~~~~~~~~------~~d~ 70 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----NHPHFHFVEGDISIHSEWIEYHVK------KCDV 70 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-----TCTTEEEEECCTTTCSHHHHHHHH------HCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-----cCCCeEEEECccCChHHHHHHHHh------CCCc
Confidence 58999999999999999999999558888877644322211 135789999999988766553321 4999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+|+..... ...++....+.+|+.|+.++++.+... +-+++++||...+.+.....
T Consensus 71 Vih~a~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~~~~~-------~~~~~~~ss~~~~~~~~~~~---------- 128 (342)
T d2blla1 71 VLPLVAIATPI-----EYTRNPLRVFELDFEENLRIIRYCVKY-------RKRIIFPSTSEVYGMCSDKY---------- 128 (342)
T ss_dssp EEECBCCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEECCGGGGBTCCCSS----------
T ss_pred ccccccccccc-----ccccCCccccccccccccccccccccc-------cccccccccccccccccccc----------
Confidence 99999975321 133455678999999999999987543 23677777766553211000
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch---hhhhh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP---LFRLL 324 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~---~~~~~ 324 (399)
.........+.....+...|+.||.+.+.+++.+++++ |+.+..+.|..+..+........ .....
T Consensus 129 -------~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~ 197 (342)
T d2blla1 129 -------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 197 (342)
T ss_dssp -------BCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSSCCCTTCSBSCBCHHH
T ss_pred -------cccccccccccccCCCcchhhhcccchhhhhhhhhccc----CceeEEeeccccccccccccccccccccccc
Confidence 00000111122234566789999999999999888876 89999999888877533221110 00111
Q ss_pred chhhHHH--------H-----hcCCCChHHHHHHHHHhhcCCCCCCCceEEccC
Q 015844 325 FPPFQKY--------I-----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 365 (399)
Q Consensus 325 ~~~~~~~--------~-----~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~d 365 (399)
...+... + .+.++..+|+++++..++..+.....|..+.+.
T Consensus 198 ~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig 251 (342)
T d2blla1 198 TQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG 251 (342)
T ss_dssp HHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEEC
T ss_pred hHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhccccCCCeEEEEe
Confidence 1111111 0 112678999999999999876555567777653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.62 E-value=2.5e-15 Score=140.80 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=147.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh---HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.|.||||||+|-||.++++.|+++|. .|.++.++. ......... ..+.++.++.+|++|.+.+..++.
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~-~v~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~~Di~d~~~~~~~~~------ 72 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHP-DVHVTVLDKLTYAGNKANLEA--ILGDRVELVVGDIADAELVDKLAA------ 72 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCT-TCEEEEEECCCTTCCGGGTGG--GCSSSEEEEECCTTCHHHHHHHHT------
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCC-CeEEEEEeCCCccccHHHHHH--hhcCCeEEEEccCCCHHHHHHHHh------
Confidence 46899999999999999999999994 544443321 000000011 124578999999999999888764
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
..|.++|.|+..... ....+..+.+++|+.|+.+++..+...- .++|++||.+.+ |..+... ..
T Consensus 73 -~~~~v~~~a~~~~~~-----~~~~~~~~~~~~N~~g~~nll~~~~~~~-------~k~i~~ss~~vy-g~~~~~~--~~ 136 (346)
T d1oc2a_ 73 -KADAIVHYAAESHND-----NSLNDPSPFIHTNFIGTYTLLEAARKYD-------IRFHHVSTDEVY-GDLPLRE--DL 136 (346)
T ss_dssp -TCSEEEECCSCCCHH-----HHHHCCHHHHHHHTHHHHHHHHHHHHHT-------CEEEEEEEGGGG-CCBCCGG--GS
T ss_pred -hhhhhhhhhhccccc-----chhhCcccceeeehHhHHhhhhhhcccc-------ccccccccceEe-cccCccc--cc
Confidence 588899999875321 1335567889999999999998775542 378888887654 2110000 00
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhh
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 322 (399)
.. ..........+..+..+...|+.+|.+.+.+++.+.+++ |+++.++.|+.|..|...... ....
T Consensus 137 ~~---------~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~vyGp~~~~~~-~~~~ 202 (346)
T d1oc2a_ 137 PG---------HGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQHIEK-FIPR 202 (346)
T ss_dssp TT---------TTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTCCTTS-HHHH
T ss_pred cc---------cccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc----CCCEEEEeecceeCCCCCccc-hhHH
Confidence 00 000011122233344566789999999999999888775 899999999999876322111 1111
Q ss_pred hhchhhHHH---------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEc
Q 015844 323 LLFPPFQKY---------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 363 (399)
Q Consensus 323 ~~~~~~~~~---------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~ 363 (399)
.+....... ..+.++..+|+|++++.++..+.. .+.|..
T Consensus 203 ~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~~--~~~~~~ 250 (346)
T d1oc2a_ 203 QITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRM--GETYLI 250 (346)
T ss_dssp HHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCT--TCEEEE
T ss_pred HHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhccc--Cccccc
Confidence 111111110 112256789999999888765533 444443
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7e-15 Score=137.67 Aligned_cols=179 Identities=13% Similarity=0.029 Sum_probs=125.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeec------Ch----HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACR------DF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r------~~----~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 156 (399)
|+||||||+|.||.+++++|++.| +.|+.+++ +. ...+. ...+ ...++.++.+|++|.+.+++++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~Dl~d~~~l~~~~~ 78 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRR-VQEL--TGRSVEFEEMDILDQGALQRLFK 78 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHH-HHHH--HTCCCEEEECCTTCHHHHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHH-HHHh--cCCCcEEEEeecccccccccccc
Confidence 689999999999999999999999 68888753 11 22222 2222 23578899999999999988876
Q ss_pred HHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCC
Q 015844 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (399)
Q Consensus 157 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (399)
. ..+++++|.|+.... ..+.++....+++|+.|+.++++++...-. .+||++||...+......
T Consensus 79 ~-----~~~~~i~h~Aa~~~~-----~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v------~~~i~~ss~~~~~~~~~~ 142 (346)
T d1ek6a_ 79 K-----YSFMAVIHFAGLKAV-----GESVQKPLDYYRVNLTGTIQLLEIMKAHGV------KNLVFSSSATVYGNPQYL 142 (346)
T ss_dssp H-----CCEEEEEECCSCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEEEEGGGGCSCSSS
T ss_pred c-----cccccccccccccCc-----HhhHhCHHHHHHhhhcccccccchhhhcCc------ccccccccceeeeccccc
Confidence 5 368899999997532 224455678899999999999988754321 389998887665311000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCC
Q 015844 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~ 311 (399)
....+.........|+.+|.+.+...+.+++.. .++....+.|+.+.++
T Consensus 143 -----------------------~~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~ 191 (346)
T d1ek6a_ 143 -----------------------PLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQAD---KTWNAVLLRYFNPTGA 191 (346)
T ss_dssp -----------------------SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHC---TTCEEEEEEECEEECC
T ss_pred -----------------------cccccccccccCChHHHHHHHHHHHHHHHHHhc---cCCceEEEeecceecc
Confidence 000011112344579999999988888776543 4788888888887665
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=5.1e-15 Score=136.66 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=121.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
.|+||||||+|.||.++++.|+++| +.|+++.+.. .+|+.+.+.++++++.- .+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g-~~vi~~~~~~--------------------~~~~~~~~~~~~~~~~~-----~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD--------------------ELNLLDSRAVHDFFASE-----RI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT--------------------TCCTTCHHHHHHHHHHH-----CC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc-CEEEEecCch--------------------hccccCHHHHHHHHhhc-----CC
Confidence 3679999999999999999999999 5777665431 16999999999887643 69
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|.++|+|+..... .....+..+.+++|+.|+.++++++...-. .++|++||.+.+.+. .. .. .
T Consensus 56 d~v~~~a~~~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v------~~~i~~SS~~vyg~~-~~---~~--~- 118 (315)
T d1e6ua_ 56 DQVYLAAAKVGGI----VANNTYPADFIYQNMMIESNIIHAAHQNDV------NKLLFLGSSCIYPKL-AK---QP--M- 118 (315)
T ss_dssp SEEEECCCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEECCGGGSCTT-CC---SS--B-
T ss_pred CEEEEcchhcccc----ccchhhHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEECCceEcCCC-CC---CC--c-
Confidence 9999999765321 123445566788999999999988765421 389999998866311 00 00 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCC
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~ 312 (399)
......+..+.++...|+.||.+.+.+++.+.++. |+++..+.|+.|-.|.
T Consensus 119 ------------~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyGp~ 169 (315)
T d1e6ua_ 119 ------------AESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPH 169 (315)
T ss_dssp ------------CGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTT
T ss_pred ------------cCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCC
Confidence 00011112233456789999999999999998775 8999999999998763
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.59 E-value=2.3e-14 Score=133.10 Aligned_cols=189 Identities=16% Similarity=0.070 Sum_probs=122.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC--hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+||||||+|.||.++++.|+++| +.|+.+++- ...... ...+.. ..++.++.+|++|.+.+.++++.. ++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~-~~~~~~-~~~~~~i~~Di~~~~~l~~~~~~~-----~~ 73 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDN-LHWLSS-LGNFEFVHGDIRNKNDVTRLITKY-----MP 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHH-HHHHHT-TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhH-HHHhhc-cCCcEEEEcccCCHHHHHHHHHhc-----CC
Confidence 58999999999999999999999 588887642 122222 222221 256889999999999999998865 69
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||+|+.... ....++....+++|+.|+.++++++...-. .++|++||.....+........ ...
T Consensus 74 d~Vih~aa~~~~-----~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~------~~~i~~sS~~~~~~~~~~~~~~--~~~ 140 (338)
T d1orra_ 74 DSCFHLAGQVAM-----TTSIDNPCMDFEINVGGTLNLLEAVRQYNS------NCNIIYSSTNKVYGDLEQYKYN--ETE 140 (338)
T ss_dssp SEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCT------TCEEEEEEEGGGGTTCTTSCEE--ECS
T ss_pred ceEEeecccccc-----cccccChHHHHHHHHHHHHHHHHhhhcccc------cccccccccccccccccccccc--ccc
Confidence 999999987532 123445678899999999999998766432 2566666655543221110000 000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCC
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 306 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG 306 (399)
.. ...........+.....+...|+.+|...+.+.......+ ++....+.|.
T Consensus 141 ~~-----~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~----~~~~~~~~~~ 192 (338)
T d1orra_ 141 TR-----YTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF----GLNTVVFRHS 192 (338)
T ss_dssp SC-----EEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEEC
T ss_pred cc-----ccccccccCcccCCccccccccccccchhhhhhhhhhhcc----Cccccccccc
Confidence 00 0000111122233445567899999999999888888776 4444444433
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-14 Score=134.44 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=137.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|+||||||+|.||.++++.|+++| +.|+.++|... ..+...... ...++.....|+.+. ...++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~------------~~~~~ 66 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWI--GHENFELINHDVVEP------------LYIEV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGT--TCTTEEEEECCTTSC------------CCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCcCCHHHHHHhc--CCCceEEEehHHHHH------------HHcCC
Confidence 689999999999999999999999 59998876321 111111111 123455555555322 12369
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|+|||+|+..... ...++..+.+++|+.|+.++++++... +.++|++||.+.+. ..... |
T Consensus 67 d~VihlAa~~~~~-----~~~~~~~~~~~~Nv~g~~~ll~~~~~~-------~~k~I~~SS~~vy~-~~~~~-~------ 126 (312)
T d2b69a1 67 DQIYHLASPASPP-----NYMYNPIKTLKTNTIGTLNMLGLAKRV-------GARLLLASTSEVYG-DPEVH-P------ 126 (312)
T ss_dssp SEEEECCSCCSHH-----HHTTCHHHHHHHHHHHHHHHHHHHHHH-------TCEEEEEEEGGGGB-SCSSS-S------
T ss_pred CEEEECcccCCch-----hHHhCHHHHHHHHHHHHHHHHHHHHHc-------CCcEEEEEChheec-CCCCC-C------
Confidence 9999999975321 123455678999999999999887543 13899999976552 11000 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh-hhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-RLL 324 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~-~~~ 324 (399)
.+.....+..+..+...|+.||.+.+.+++.+++++ |+.+.+++|+.|-.|.......... ..+
T Consensus 127 -----------~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~~~~~~~i~~~i 191 (312)
T d2b69a1 127 -----------QSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRMHMNDGRVVSNFI 191 (312)
T ss_dssp -----------BCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTCCTTCCCHHHHHH
T ss_pred -----------CCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHh----CCcEEEEEeeeEECCCCCCCCccHHHHHH
Confidence 000011122345567889999999999999888876 8999999999998875432211111 111
Q ss_pred chhhHHHH---------hcCCCChHHHHHHHHHhhcCC
Q 015844 325 FPPFQKYI---------TKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 325 ~~~~~~~~---------~~~~~~pee~a~~v~~l~~~~ 353 (399)
......-+ .+-++..+|++++++.++...
T Consensus 192 ~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~ 229 (312)
T d2b69a1 192 LQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 229 (312)
T ss_dssp HHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS
T ss_pred HHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhc
Confidence 11111100 112467899999998887654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.59 E-value=1.7e-14 Score=135.92 Aligned_cols=224 Identities=13% Similarity=-0.006 Sum_probs=145.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++++||||||+|.||.+++++|.++| +.|+.+++..... ....-....+..+|+.+.+.+..+++ .
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 79 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEH------MTEDMFCDEFHLVDLRVMENCLKVTE-------G 79 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSS------SCGGGTCSEEEECCTTSHHHHHHHHT-------T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCccc------hhhhcccCcEEEeechhHHHHHHHhh-------c
Confidence 56679999999999999999999999 6999887643210 00001234677889999988766553 6
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+|.|||.|+..... ..+.+.....+.+|+.++.+++.++...-. .++|++||...+...... .......
T Consensus 80 ~d~Vih~a~~~~~~----~~~~~~~~~~~~~n~~gt~~ll~~~~~~~v------k~~i~~SS~~~~~~~~~~-~~~~~~~ 148 (363)
T d2c5aa1 80 VDHVFNLAADMGGM----GFIQSNHSVIMYNNTMISFNMIEAARINGI------KRFFYASSACIYPEFKQL-ETTNVSL 148 (363)
T ss_dssp CSEEEECCCCCCCH----HHHTTCHHHHHHHHHHHHHHHHHHHHHTTC------SEEEEEEEGGGSCGGGSS-SSSSCEE
T ss_pred CCeEeecccccccc----cccccccccccccccchhhHHHHhHHhhCc------cccccccccccccccccc-ccccccc
Confidence 89999999875321 123456678889999999999998765432 389999997765311110 0000000
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
...+..+..+...|+.||.+.+.+++.+.+++ |+++..+.|+.+..+.............
T Consensus 149 ----------------~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyG~~~~~~~~~~~~~~ 208 (363)
T d2c5aa1 149 ----------------KESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPFGTWKGGREKAPA 208 (363)
T ss_dssp ----------------CGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCCSSSCCCHHH
T ss_pred ----------------ccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEeccCCccccccccccc
Confidence 00111233456789999999999998888775 8999999999998763221111100000
Q ss_pred chhhHH----H---------HhcCCCChHHHHHHHHHhhcCC
Q 015844 325 FPPFQK----Y---------ITKGYVSEDEAGKRLAQVVSDP 353 (399)
Q Consensus 325 ~~~~~~----~---------~~~~~~~pee~a~~v~~l~~~~ 353 (399)
...... . ..+.++..+|++..++.++...
T Consensus 209 ~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~ 250 (363)
T d2c5aa1 209 AFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 250 (363)
T ss_dssp HHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS
T ss_pred ccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCC
Confidence 000000 0 0122567889999988887654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.57 E-value=1.8e-14 Score=135.20 Aligned_cols=190 Identities=16% Similarity=0.116 Sum_probs=135.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
..+||+||||||+|.||.++++.|+++| +.|+.++|+........+... ....+.++.+|++|++.+.++++..
T Consensus 5 ~~~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~i~~~~~Dl~d~~~l~~~~~~~---- 78 (356)
T d1rkxa_ 5 FWQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETAR-VADGMQSEIGDIRDQNKLLESIREF---- 78 (356)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTT-TTTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred hhCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHHHHhhhh-cccCCeEEEeeccChHhhhhhhhhc----
Confidence 4689999999999999999999999999 599999997654433333322 1246889999999999999888765
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
.+|+++|.|+.... ..+.+.....+.+|+.|+.++++++...-.. ..+++.||..... ..
T Consensus 79 -~~~~v~~~aa~~~~-----~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~-----~~~~~~s~~~~~~-~~-------- 138 (356)
T d1rkxa_ 79 -QPEIVFHMAAQPLV-----RLSYSEPVETYSTNVMGTVYLLEAIRHVGGV-----KAVVNITSDKCYD-NK-------- 138 (356)
T ss_dssp -CCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHHCCC-----CEEEEECCGGGBC-CC--------
T ss_pred -hhhhhhhhhccccc-----cccccCCccccccccccchhhhhhhhccccc-----ccccccccccccc-cc--------
Confidence 79999999986422 2245667788999999999999988754221 2444444433321 10
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhcc-----CCceEEEEeeCCcccCCC
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-----ETGIAFASLYPGCIATTG 312 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-----~~gi~v~~v~PG~v~T~~ 312 (399)
....+..+..+..+...|+.+|.+.+.+++.++.++.. ..++.+..+.|+.+..+.
T Consensus 139 --------------~~~~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~ 199 (356)
T d1rkxa_ 139 --------------EWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG 199 (356)
T ss_dssp --------------CSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred --------------ccccccccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCC
Confidence 01111222234456678999999999988888876521 247889999999887653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.57 E-value=1.8e-14 Score=133.46 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=144.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-----cEEEEeecCh--HHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGK-----WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-----~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+||||||+|.||.++++.|+++|. .+++..++.. ...... ..+ ....++.++.+|.++........
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~d~~~~~~~~~~~----- 74 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL-APV-DADPRLRFVHGDIRDAGLLAREL----- 74 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG-GGG-TTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHh-hhh-hcCCCeEEEEeccccchhhhccc-----
Confidence 589999999999999999999983 1334333211 110111 111 12357899999999998766443
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
..+|.+||+|+.... ..........+++|+.|+.++++++...- ..+||++||.+.+...
T Consensus 75 --~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~N~~gt~~ll~~~~~~~------~~~~I~~Ss~~~yg~~------- 134 (322)
T d1r6da_ 75 --RGVDAIVHFAAESHV-----DRSIAGASVFTETNVQGTQTLLQCAVDAG------VGRVVHVSTNQVYGSI------- 134 (322)
T ss_dssp --TTCCEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHTT------CCEEEEEEEGGGGCCC-------
T ss_pred --cccceEEeecccccc-----cccccchHHHhhhhHHHHHHHHHHHHHcC------CceEEEeecceeecCC-------
Confidence 379999999987532 23456677889999999999999886532 2389999998765311
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchh
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~ 320 (399)
...+..|..+..+...|+.||.+.+.+++.+++++ |+.+.++.|+.|-.|....+.. .
T Consensus 135 -----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~~~~~-i 192 (322)
T d1r6da_ 135 -----------------DSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQHPEKL-I 192 (322)
T ss_dssp -----------------SSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCTTSH-H
T ss_pred -----------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEECcCCCcCcH-H
Confidence 01122233445566789999999999999998775 8999999999998874322211 1
Q ss_pred hhhhchhhHHH--H-------hcCCCChHHHHHHHHHhhcCCC
Q 015844 321 FRLLFPPFQKY--I-------TKGYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 321 ~~~~~~~~~~~--~-------~~~~~~pee~a~~v~~l~~~~~ 354 (399)
...+......- . .+-++..+|+|+++..++..+.
T Consensus 193 ~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~ 235 (322)
T d1r6da_ 193 PLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR 235 (322)
T ss_dssp HHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCC
Confidence 01111111100 0 1125689999999999997754
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.56 E-value=1.2e-13 Score=131.13 Aligned_cols=190 Identities=16% Similarity=0.111 Sum_probs=130.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHH-cCCcEEEEeec---------ChHHHHHHHHHhc---c-----CCCcEEEEEecCCCH
Q 015844 87 GSVIITGASSGLGLATAKALAE-TGKWHIIMACR---------DFLKAERAAKSAG---M-----AKENYTIMHLDLASL 148 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~r---------~~~~~~~~~~~~~---~-----~~~~~~~~~~Dvs~~ 148 (399)
..||||||+|.||..++++|++ .| +.|+++++ ..+..+.....+. . ....+.++.+|++|.
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 4699999999999999999986 56 68988763 1111222222211 1 134578899999999
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccc
Q 015844 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (399)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~ 228 (399)
+.++++++.. .++|+|||.|+.... ....+.....+++|+.++.++++++..... .++++++|..
T Consensus 82 ~~l~~~~~~~----~~~d~ViH~Aa~~~~-----~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~------~~~~~~~s~~ 146 (383)
T d1gy8a_ 82 DFLNGVFTRH----GPIDAVVHMCAFLAV-----GESVRDPLKYYDNNVVGILRLLQAMLLHKC------DKIIFSSSAA 146 (383)
T ss_dssp HHHHHHHHHS----CCCCEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEEEEGG
T ss_pred HHhhhhhhcc----ceeehhhcccccccc-----cccccccccccccccccccccchhhhccCC------cccccccccc
Confidence 9988888653 479999999997532 123445667889999999999988765422 3777777766
Q ss_pred cccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcc
Q 015844 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (399)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 308 (399)
......... ......+..+.....+...|+.+|.+.+.+++.+...+ |+.+.+++|+.+
T Consensus 147 ~~~~~~~~~-----------------~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gl~~~~lR~~~v 205 (383)
T d1gy8a_ 147 IFGNPTMGS-----------------VSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFNA 205 (383)
T ss_dssp GTBSCCC----------------------CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred ccccccccc-----------------ccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh----CCCEEEEeccee
Confidence 543111000 00111223333455677889999999999998888775 899999999998
Q ss_pred cCCCC
Q 015844 309 ATTGL 313 (399)
Q Consensus 309 ~T~~~ 313 (399)
..+..
T Consensus 206 yG~~~ 210 (383)
T d1gy8a_ 206 CGAHE 210 (383)
T ss_dssp ECCCT
T ss_pred eccCc
Confidence 87644
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.2e-14 Score=128.30 Aligned_cols=207 Identities=17% Similarity=0.133 Sum_probs=133.2
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..|++|+||||||||.||.++++.|+++|. .+|++++|++..... .....+....+|+.+.+++.+.+
T Consensus 10 ~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~------~~~~~i~~~~~D~~~~~~~~~~~----- 78 (232)
T d2bkaa1 10 FRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE------EAYKNVNQEVVDFEKLDDYASAF----- 78 (232)
T ss_dssp HHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS------GGGGGCEEEECCGGGGGGGGGGG-----
T ss_pred hCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc------cccceeeeeeecccccccccccc-----
Confidence 357889999999999999999999999994 279999997532111 11235667778888766554333
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCC
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (399)
..+|++||++|... ..........+|+.++.++.+.+...- -.+||++||.....
T Consensus 79 --~~~d~vi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~------v~~fi~~Ss~~~~~--------- 133 (232)
T d2bkaa1 79 --QGHDVGFCCLGTTR--------GKAGAEGFVRVDRDYVLKSAELAKAGG------CKHFNLLSSKGADK--------- 133 (232)
T ss_dssp --SSCSEEEECCCCCH--------HHHHHHHHHHHHTHHHHHHHHHHHHTT------CCEEEEECCTTCCT---------
T ss_pred --cccccccccccccc--------cccchhhhhhhcccccceeeecccccC------ccccccCCcccccc---------
Confidence 36999999998641 234455667889999999888875422 24899999876542
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCce-EEEEeeCCcccCCCCccccch
Q 015844 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIP 319 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi-~v~~v~PG~v~T~~~~~~~~~ 319 (399)
.....|+.+|...+... .++ +. ++..++||.+..+........
T Consensus 134 ----------------------------~~~~~Y~~~K~~~E~~l----~~~----~~~~~~IlRP~~i~G~~~~~~~~~ 177 (232)
T d2bkaa1 134 ----------------------------SSNFLYLQVKGEVEAKV----EEL----KFDRYSVFRPGVLLCDRQESRPGE 177 (232)
T ss_dssp ----------------------------TCSSHHHHHHHHHHHHH----HTT----CCSEEEEEECCEEECTTGGGSHHH
T ss_pred ----------------------------CccchhHHHHHHhhhcc----ccc----cccceEEecCceeecCCCcCcHHH
Confidence 22346999998766443 222 33 477889999987632211100
Q ss_pred -hhhhhchhh-HHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEE
Q 015844 320 -LFRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 362 (399)
Q Consensus 320 -~~~~~~~~~-~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~ 362 (399)
....+...+ ........++.+|+|++++.++..+.. .+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~~~~~~~~--~~~~i 220 (232)
T d2bkaa1 178 WLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD--KQMEL 220 (232)
T ss_dssp HHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC--SSEEE
T ss_pred HHHHHHhhccCCcccCCCeEEHHHHHHHHHHHHhcCcc--CCeEE
Confidence 001111110 111122346789999999988876643 44443
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.51 E-value=1.9e-13 Score=120.27 Aligned_cols=217 Identities=15% Similarity=0.091 Sum_probs=134.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCc-EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|||||||+|.||+++++.|+++|.. .|+...|++.+.... ..++.++.+|+++.+++.++++ .+
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~-------~~ 69 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ-------GI 69 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT-------TC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-------cCCcEEEEeeeccccccccccc-------cc
Confidence 69999999999999999999999942 456677887654322 2456788999999999887765 58
Q ss_pred cEEEecCcccCCCCC--------CCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCC
Q 015844 166 DVLVCNAAVYLPTAK--------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (399)
Q Consensus 166 d~lv~nAg~~~~~~~--------~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (399)
|.+||+|+....... ........+.....+|+.++.++........ .+...+.++........
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~--- 140 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG------VKHIVVVGSMGGTNPDH--- 140 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT------CSEEEEEEETTTTCTTC---
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc------ccccccccccccCCCCc---
Confidence 999999987532111 1112234456677889999888877665543 24777777655432000
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCcccc
Q 015844 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~ 317 (399)
.........|...+.. ...+.. ..|+++..++||.+..+.....
T Consensus 141 ---------------------------~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~ilRp~~v~g~~~~~~- 184 (252)
T d2q46a1 141 ---------------------------PLNKLGNGNILVWKRK----AEQYLA----DSGTPYTIIRAGGLLDKEGGVR- 184 (252)
T ss_dssp ---------------------------GGGGGGGCCHHHHHHH----HHHHHH----HSSSCEEEEEECEEECSCTTSS-
T ss_pred ---------------------------ccccccccchhhhhhh----hhhhhh----cccccceeecceEEECCCcchh-
Confidence 0011122234444333 222222 2489999999999977632111
Q ss_pred chhhhhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.......... ......+++.+|+|++++.++.++. ..|+.+.+.+
T Consensus 185 -~~~~~~~~~~-~~~~~~~i~~~Dva~a~~~~l~~~~--~~g~~~~i~~ 229 (252)
T d2q46a1 185 -ELLVGKDDEL-LQTDTKTVPRADVAEVCIQALLFEE--AKNKAFDLGS 229 (252)
T ss_dssp -CEEEESTTGG-GGSSCCEEEHHHHHHHHHHHTTCGG--GTTEEEEEEE
T ss_pred -hhhhccCccc-ccCCCCeEEHHHHHHHHHHHhCCcc--ccCcEEEEee
Confidence 1000000000 0111346789999999999988764 3566665543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.28 E-value=1.3e-10 Score=104.42 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=131.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
++|||||+|.||.+++++|.++| +.|+.++|+. +|++|.++++++++.. ++|+
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r~~---------------------~D~~d~~~~~~~l~~~-----~~d~ 55 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKN-VEVIPTDVQD---------------------LDITNVLAVNKFFNEK-----KPNV 55 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS-EEEEEECTTT---------------------CCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEeechh---------------------ccCCCHHHHHHHHHHc-----CCCE
Confidence 48999999999999999999999 6999998852 5999999999988765 6899
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+|+.... +......+..+..|+.....+........ ..+++.||..... ..
T Consensus 56 vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-------~~~~~~ss~~v~~-~~------------- 109 (281)
T d1vl0a_ 56 VINCAAHTAV-----DKCEEQYDLAYKINAIGPKNLAAAAYSVG-------AEIVQISTDYVFD-GE------------- 109 (281)
T ss_dssp EEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHHT-------CEEEEEEEGGGSC-SC-------------
T ss_pred EEeecccccc-----ccccccchhhccccccccccccccccccc-------ccccccccceeee-cc-------------
Confidence 9999987532 12344556777888888877776655431 3666666654432 10
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhhhhhchh
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 327 (399)
...+..+..+..+...|+.+|...+.+.+ +. +.+...+.|+.|..+.. ..... .+...
T Consensus 110 ----------~~~~~~e~~~~~~~~~~~~~k~~~e~~~~----~~----~~~~~i~R~~~vyG~~~--~~~~~--~~~~~ 167 (281)
T d1vl0a_ 110 ----------AKEPITEFDEVNPQSAYGKTKLEGENFVK----AL----NPKYYIVRTAWLYGDGN--NFVKT--MINLG 167 (281)
T ss_dssp ----------CSSCBCTTSCCCCCSHHHHHHHHHHHHHH----HH----CSSEEEEEECSEESSSS--CHHHH--HHHHH
T ss_pred ----------ccccccccccccchhhhhhhhhHHHHHHH----Hh----CCCccccceeEEeCCCc--ccccc--hhhhh
Confidence 01112233344566789999887655442 32 56777899999977632 11111 01000
Q ss_pred hHHH-------HhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 328 FQKY-------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 328 ~~~~-------~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.... ....+...+|+++.+..++... .+|.|...++
T Consensus 168 ~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~---~~g~~~~~~~ 210 (281)
T d1vl0a_ 168 KTHDELKVVHDQVGTPTSTVDLARVVLKVIDEK---NYGTFHCTCK 210 (281)
T ss_dssp HHCSEEEEESSCEECCEEHHHHHHHHHHHHHHT---CCEEEECCCB
T ss_pred ccCCceeecCCceeccchhhhhhhhhhhhhhhc---ccCceeEeCC
Confidence 0000 0123568999999999998664 3576655444
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.26 E-value=2.1e-11 Score=105.38 Aligned_cols=188 Identities=12% Similarity=0.146 Sum_probs=116.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCc-EEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
|++|||||||.||++++++|+++|.. +|+...|+... ...+ +..++.|..++.. ...+.+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~~~~---~~~~~~d~~~~~~------~~~~~~ 63 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPR---LDNPVGPLAELLP------QLDGSI 63 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTT---EECCBSCHHHHGG------GCCSCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------hccc---ccccccchhhhhh------ccccch
Confidence 78999999999999999999999942 56666765311 0112 2445555543322 223579
Q ss_pred cEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcc
Q 015844 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (399)
Q Consensus 166 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (399)
|.+|+++|.... ....-....++|+.++.++++.+... + -.++|++||..+..
T Consensus 64 d~vi~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~----~--v~~~i~~Ss~~~~~-------------- 116 (212)
T d2a35a1 64 DTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALEM----G--ARHYLVVSALGADA-------------- 116 (212)
T ss_dssp SEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEECCTTCCT--------------
T ss_pred heeeeeeeeecc-------ccccccccccchhhhhhhcccccccc----c--cccccccccccccc--------------
Confidence 999999987521 11223567788999999888876432 1 24899999876542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCce-EEEEeeCCcccCCCCccccchhhhhh
Q 015844 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIPLFRLL 324 (399)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi-~v~~v~PG~v~T~~~~~~~~~~~~~~ 324 (399)
.....|..+|...+.+. ++. +. +++.++|++|..+..... ....+
T Consensus 117 -----------------------~~~~~y~~~K~~~E~~l----~~~----~~~~~~I~Rp~~v~G~~~~~~---~~~~~ 162 (212)
T d2a35a1 117 -----------------------KSSIFYNRVKGELEQAL----QEQ----GWPQLTIARPSLLFGPREEFR---LAEIL 162 (212)
T ss_dssp -----------------------TCSSHHHHHHHHHHHHH----TTS----CCSEEEEEECCSEESTTSCEE---GGGGT
T ss_pred -----------------------ccccchhHHHHHHhhhc----ccc----ccccceeeCCcceeCCccccc---HHHHH
Confidence 22346999998755433 222 33 577889999977632211 11111
Q ss_pred chhhHHHHhc--CCCChHHHHHHHHHhhcCCC
Q 015844 325 FPPFQKYITK--GYVSEDEAGKRLAQVVSDPS 354 (399)
Q Consensus 325 ~~~~~~~~~~--~~~~pee~a~~v~~l~~~~~ 354 (399)
...+.....+ +.+..+|+|++++.++.++.
T Consensus 163 ~~~~~~~~~~~~~~i~v~DvA~ai~~~~~~~~ 194 (212)
T d2a35a1 163 AAPIARILPGKYHGIEACDLARALWRLALEEG 194 (212)
T ss_dssp TCCCC----CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhhccCCCCcEEEHHHHHHHHHHHHcCCC
Confidence 1111111111 23678999999999987753
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.21 E-value=2.3e-11 Score=110.22 Aligned_cols=139 Identities=15% Similarity=0.118 Sum_probs=96.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.+|||||+|-||.++++.|.+.| +.|++..++.. +.+|++|.+.++++++.. ++|+
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g-~~v~~~~~~~~------------------~~~Dl~~~~~~~~~i~~~-----~~D~ 57 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVG-NLIALDVHSKE------------------FCGDFSNPKGVAETVRKL-----RPDV 57 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTS-EEEEECTTCSS------------------SCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEECCCcc------------------ccCcCCCHHHHHHHHHHc-----CCCE
Confidence 49999999999999999999999 45444433311 247999999999988865 6999
Q ss_pred EEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCcccc
Q 015844 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (399)
Q Consensus 168 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (399)
|||+||..... .+.+.-...+++|+.++.++.+++.. . +.+++++||...+...
T Consensus 58 Vih~Aa~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~~~~~~~ss~~~~~~~-------------- 111 (298)
T d1n2sa_ 58 IVNAAAHTAVD-----KAESEPELAQLLNATSVEAIAKAANE----T---GAWVVHYSTDYVFPGT-------------- 111 (298)
T ss_dssp EEECCCCCCHH-----HHTTCHHHHHHHHTHHHHHHHHHHTT----T---TCEEEEEEEGGGSCCC--------------
T ss_pred EEEeccccccc-----ccccCccccccccccccccchhhhhc----c---ccccccccccccccCC--------------
Confidence 99999975321 13344567888999999888887642 2 2478888776544211
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHH
Q 015844 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQ 286 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~ 286 (399)
...+..|..+..+...|+.+|.+.+.+.+
T Consensus 112 ----------~~~~~~E~~~~~p~~~y~~~k~~~e~~~~ 140 (298)
T d1n2sa_ 112 ----------GDIPWQETDATSPLNVYGKTKLAGEKALQ 140 (298)
T ss_dssp ----------TTCCBCTTSCCCCSSHHHHHHHHHHHHHH
T ss_pred ----------CCCCCccccccCCCchHhhhhhhhhhhHH
Confidence 11122333444566789999988665543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.16 E-value=1.6e-10 Score=105.20 Aligned_cols=206 Identities=11% Similarity=0.058 Sum_probs=117.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH--HH--HHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AE--RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~--~~--~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++||||||+|.||++++++|+++| +.|+++.|+... .. .....+. ...+.++.+|++|.+.+.+.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~--~~~v~~v~~d~~d~~~~~~~~~------ 74 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALK------ 74 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHT------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcccchhHHHHHhhhc--cCCcEEEEeecccchhhhhhcc------
Confidence 459999999999999999999999 699999886421 11 1112222 3457889999999998877765
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCC
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (399)
..+.++++++.... ..|..+..+++.++.. .. ..++++.||.......
T Consensus 75 -~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~a~~----~~--~~~~v~~Ss~g~~~~~--------- 122 (312)
T d1qyda_ 75 -QVDVVISALAGGVL----------------SHHILEQLKLVEAIKE----AG--NIKRFLPSEFGMDPDI--------- 122 (312)
T ss_dssp -TCSEEEECCCCSSS----------------STTTTTHHHHHHHHHH----SC--CCSEEECSCCSSCTTS---------
T ss_pred -Ccchhhhhhhhccc----------------ccchhhhhHHHHHHHH----hc--CCcEEEEeeccccCCC---------
Confidence 57888888875321 1233344444444432 21 2467777764332100
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccchhh-
Q 015844 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF- 321 (399)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~~- 321 (399)
...+..+...|..+|..... +..+ .++.+..++||.+..+.... .....
T Consensus 123 ---------------------~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~i~r~~~~~g~~~~~-~~~~~~ 172 (312)
T d1qyda_ 123 ---------------------MEHALQPGSITFIDKRKVRR----AIEA----ASIPYTYVSSNMFAGYFAGS-LAQLDG 172 (312)
T ss_dssp ---------------------CCCCCSSTTHHHHHHHHHHH----HHHH----TTCCBCEEECCEEHHHHTTT-SSCTTC
T ss_pred ---------------------cccccchhhhhhHHHHHHHH----hhcc----cccceEEeccceeecCCccc-hhhHHH
Confidence 00122333456666555333 2222 37788888888875421110 00000
Q ss_pred ------hhhchhhHHHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEcc
Q 015844 322 ------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 364 (399)
Q Consensus 322 ------~~~~~~~~~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~ 364 (399)
....-+........++..+|+|++++.++.++.. .++.++..
T Consensus 173 ~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~~~~ 220 (312)
T d1qyda_ 173 HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT-LNKTMYIR 220 (312)
T ss_dssp CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG-SSSEEECC
T ss_pred HhhhcccccccccccccccceeeHHHHHHHHHHHhcCccc-cCceEEEe
Confidence 0000000000112267999999999999877643 34444443
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.08 E-value=5.4e-10 Score=100.88 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=60.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHH-----HHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-----ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.|+||||||+|.||.++++.|+++| +.|+++.|+.... ......+. ...+.++.+|+.+.....+.++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~---- 75 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVK---- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHH----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhhh----
Confidence 4679999999999999999999999 6999999864221 11112222 2457788999999998777765
Q ss_pred cCCCccEEEecCccc
Q 015844 161 SGRPLDVLVCNAAVY 175 (399)
Q Consensus 161 ~~g~id~lv~nAg~~ 175 (399)
..+.+|++++..
T Consensus 76 ---~~~~vi~~~~~~ 87 (307)
T d1qyca_ 76 ---NVDVVISTVGSL 87 (307)
T ss_dssp ---TCSEEEECCCGG
T ss_pred ---hceeeeeccccc
Confidence 588899988753
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.00 E-value=2.5e-09 Score=99.24 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHH-HHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~-v~~~~~~~~~~~g 163 (399)
+.|+|+||||||.||.++++.|+++| ++|+++.|+..+.... .+. ....+.++++|+.|..+ ++.++ .
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~~~~~~~--~~~-~~~~v~~~~gD~~d~~~~~~~a~-------~ 70 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLIAE--ELQ-AIPNVTLFQGPLLNNVPLMDTLF-------E 70 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHHHH--HHH-TSTTEEEEESCCTTCHHHHHHHH-------T
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCcchhhhh--hhc-ccCCCEEEEeeCCCcHHHHHHHh-------c
Confidence 46899999999999999999999999 6999999986543321 111 12467889999998654 33332 2
Q ss_pred CccEEEecC
Q 015844 164 PLDVLVCNA 172 (399)
Q Consensus 164 ~id~lv~nA 172 (399)
..|.++.+.
T Consensus 71 ~~~~~~~~~ 79 (350)
T d1xgka_ 71 GAHLAFINT 79 (350)
T ss_dssp TCSEEEECC
T ss_pred CCceEEeec
Confidence 577777654
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=3.5e-09 Score=95.74 Aligned_cols=220 Identities=11% Similarity=-0.020 Sum_probs=125.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecC--hHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH--HcCCC
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR--RSGRP 164 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~ 164 (399)
||||||+|.||..+++.|+++|.+.|+.+++- ..+..... . . ..+|..+.+.. ..... ..+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~---~---~----~~~~~~~~~~~---~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV---D---L----NIADYMDKEDF---LIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH---T---S----CCSEEEEHHHH---HHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhccc---c---c----chhhhccchHH---HHHHhhhhcccc
Confidence 79999999999999999999995457776532 11111111 0 0 11233333332 33322 23457
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccccCCCCCCCCCCCCc
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (399)
+++++|.|+.... .....+...+.|+.+..++.+.+.... -++|+.||.....+.....
T Consensus 69 ~~~i~~~aa~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~-------i~~v~~ss~~~~~~~~~~~------- 127 (307)
T d1eq2a_ 69 VEAIFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLERE-------IPFLYASSAATYGGRTSDF------- 127 (307)
T ss_dssp CCEEEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHHT-------CCEEEEEEGGGGTTCCSCB-------
T ss_pred hhhhhhhcccccc-------ccccccccccccccccccccccccccc-------ccccccccccccccccccc-------
Confidence 8899999886422 122345567788888888877665442 2566666666553221100
Q ss_pred cccccccCCCCCCCCCCCCCCCCCChhhhHHHhHHHHHHHHHHHHHhhccCCceEEEEeeCCcccCCCCccccch--hhh
Q 015844 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--LFR 322 (399)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--~~~ 322 (399)
..+.....+...|+.+|.+.+.+++.+..++ ++.+..+.|..+..|........ ...
T Consensus 128 -----------------~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~r~~~vyGp~~~~~~~~~~~~~ 186 (307)
T d1eq2a_ 128 -----------------IESREYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPREGHKGSMASVAF 186 (307)
T ss_dssp -----------------CSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSCGGGGGGSCHHH
T ss_pred -----------------cccccccccccccccccchhhhhcccccccc----ccccccccceeEeecccccccccccccc
Confidence 0011123456789999999999888877664 78899999998877633221100 000
Q ss_pred hhchhhH-----------HHHhcCCCChHHHHHHHHHhhcCCCCCCCceEEccCC
Q 015844 323 LLFPPFQ-----------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 366 (399)
Q Consensus 323 ~~~~~~~-----------~~~~~~~~~pee~a~~v~~l~~~~~~~~~G~~~~~dg 366 (399)
.+...+. ....+.+.-.++++.++..++... ..+.|....|
T Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~---~~~~~~~~~~ 238 (307)
T d1eq2a_ 187 HLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG---VSGIFNLGTG 238 (307)
T ss_dssp HHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHC---CCEEEEESCS
T ss_pred ccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhc---cccccccccc
Confidence 0100000 001123457889999888877654 2445544344
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.70 E-value=1.8e-12 Score=110.77 Aligned_cols=46 Identities=30% Similarity=0.317 Sum_probs=40.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA 134 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~ 134 (399)
++.|+||+|+||+++|+.|++.| ++|++.+|++++++.+.+++...
T Consensus 2 ki~vigGaG~iG~alA~~la~~G-~~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhc
Confidence 46788999999999999999999 59999999999998888877543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.87 E-value=4.9e-05 Score=61.27 Aligned_cols=75 Identities=25% Similarity=0.431 Sum_probs=58.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++++++++|.|+ |++|..+++.|...|+.++.++.|+.++++.+.+++. .. ++ + .+++.+.+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~---~~--~~--~---~~~~~~~l~------ 83 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG---GE--AV--R---FDELVDHLA------ 83 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT---CE--EC--C---GGGHHHHHH------
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh---cc--cc--c---chhHHHHhc------
Confidence 578999999998 9999999999999998789999999999888887763 21 11 2 233333333
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
..|+||++.+..
T Consensus 84 -~~Divi~atss~ 95 (159)
T d1gpja2 84 -RSDVVVSATAAP 95 (159)
T ss_dssp -TCSEEEECCSSS
T ss_pred -cCCEEEEecCCC
Confidence 699999998753
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=4e-05 Score=63.32 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=63.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH---HHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
++++|+++|.|+ ||.|++++..|.+.|+.+++++.|+.+..+++. +.+... .......+|+.+.+.+.....
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 89 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALA--- 89 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHH---
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhc---
Confidence 568899999998 799999999999999989999999876555443 333222 223456789999887766554
Q ss_pred HcCCCccEEEecCcc
Q 015844 160 RSGRPLDVLVCNAAV 174 (399)
Q Consensus 160 ~~~g~id~lv~nAg~ 174 (399)
..|++||+..+
T Consensus 90 ----~~diiIN~Tp~ 100 (182)
T d1vi2a1 90 ----SADILTNGTKV 100 (182)
T ss_dssp ----TCSEEEECSST
T ss_pred ----ccceeccccCC
Confidence 68999999765
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=7.8e-05 Score=60.95 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.++||+||+|++|...++.....|+ +|+.+++++++.+.+ +++ |... ..|.++.+-.+++.+... ...
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~-~~~---Ga~~---vi~~~~~~~~~~i~~~t~--~~g 97 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV-LQN---GAHE---VFNHREVNYIDKIKKYVG--EKG 97 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCSE---EEETTSTTHHHHHHHHHC--TTC
T ss_pred CCCEEEEEeccccccccccccccccCc-ccccccccccccccc-ccc---Cccc---ccccccccHHHHhhhhhc--cCC
Confidence 477999999999999999999888997 888888887665443 333 3332 247666654444433322 236
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|+++.+.|
T Consensus 98 ~d~v~d~~g 106 (174)
T d1yb5a2 98 IDIIIEMLA 106 (174)
T ss_dssp EEEEEESCH
T ss_pred ceEEeeccc
Confidence 999999876
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.67 E-value=7.8e-05 Score=61.45 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.++||+||+||+|.+.++.....|+ +|+.+.+++++.+.+.+ .+.... +|-.+++..+.+.+.. ....
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga~~v---i~~~~~~~~~~~~~~~--~~~G 98 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFDAA---FNYKTVNSLEEALKKA--SPDG 98 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSEE---EETTSCSCHHHHHHHH--CTTC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhhhhh---cccccccHHHHHHHHh--hcCC
Confidence 478999999999999999999999997 99999998776544332 233332 3444444444443332 2346
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++++.|.
T Consensus 99 vd~v~D~vG~ 108 (182)
T d1v3va2 99 YDCYFDNVGG 108 (182)
T ss_dssp EEEEEESSCH
T ss_pred CceeEEecCc
Confidence 9999999873
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.56 E-value=0.00019 Score=58.40 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=55.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+|+++|.|+ |.+|+.+|+.|+++| +.|++++|+.++++++.+.+ ........+..+.......+. ..
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g-~~V~v~dr~~~~a~~l~~~~----~~~~~~~~~~~~~~~~~~~i~-------~~ 68 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSG-IKVTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEVA-------KH 68 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTT-CEEEEEESCHHHHHHHHTTC----TTEEEEECCTTCHHHHHHHHT-------TS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECChHHHHHHHhcc----cccccccccccchhhhHhhhh-------cc
Confidence 588999887 999999999999999 59999999999888776644 334555567766666655543 45
Q ss_pred cEEEec
Q 015844 166 DVLVCN 171 (399)
Q Consensus 166 d~lv~n 171 (399)
|.++..
T Consensus 69 ~~~i~~ 74 (182)
T d1e5qa1 69 DLVISL 74 (182)
T ss_dssp SEEEEC
T ss_pred ceeEee
Confidence 666654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.54 E-value=5e-05 Score=63.08 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=54.0
Q ss_pred CCEEEE-EcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH-HcCC
Q 015844 86 KGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR-RSGR 163 (399)
Q Consensus 86 ~k~~lV-TG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~-~~~g 163 (399)
|.+++| +||+||+|.+.++..-..|+ +||.+.|+.+..++..+.+++.|....+ ..|-.+...+...+.++. ...+
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi-~~~~~~~~~~~~~v~~~~~~~g~ 106 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVI-TEDQNNSREFGPTIKEWIKQSGG 106 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEE-EHHHHHCGGGHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEE-eccccchhHHHHHHHHHHhhccC
Confidence 555555 79999999999888888897 8888887766666555555544554332 222111122223333332 3456
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|+++++.|.
T Consensus 107 ~vdvv~D~vg~ 117 (189)
T d1gu7a2 107 EAKLALNCVGG 117 (189)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 79999998763
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00014 Score=59.52 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.++||+||+|++|...++.....|+ +|+.+.+++++.+.+. ++ |... .+|-++++-.+++.+ +. ....
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~-~l---Ga~~---vi~~~~~d~~~~v~~-~t-~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSAL-KA---GAWQ---VINYREEDLVERLKE-IT-GGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTTSCHHHHHHH-HT-TTCC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHH-hc---CCeE---EEECCCCCHHHHHHH-Hh-CCCC
Confidence 477999999999999999999888997 9999999988765543 33 3332 246666554444332 21 2346
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|+++.+.|.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 9999998874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.47 E-value=0.00036 Score=57.21 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC--HHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS--LDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~~~~ 162 (399)
.|.++||+|+ |+||...++.+...|+.+|+++++++++.+.+ +++ |... ++ |..+ ..+..+.+.+... .
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~-vi--~~~~~~~~~~~~~i~~~~~-~ 98 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI---GADL-TL--NRRETSVEERRKAIMDITH-G 98 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT---TCSE-EE--ETTTSCHHHHHHHHHHHTT-T
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc---cceE-EE--eccccchHHHHHHHHHhhC-C
Confidence 4789999986 89999999999999977899999998877644 344 3332 22 4433 2233222222222 2
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
..+|++|.+.|.
T Consensus 99 ~g~Dvvid~vG~ 110 (182)
T d1vj0a2 99 RGADFILEATGD 110 (182)
T ss_dssp SCEEEEEECSSC
T ss_pred CCceEEeecCCc
Confidence 359999999885
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.41 E-value=0.00018 Score=59.05 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.++||+||+|++|...++.+...|+ +|+++.++.++.+. .+ +.|.... .|-.+++-.+++.+.. ...+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~-l~---~~Ga~~v---i~~~~~~~~~~v~~~t--~~~g 94 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREM-LS---RLGVEYV---GDSRSVDFADEILELT--DGYG 94 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHH-HH---TTCCSEE---EETTCSTHHHHHHHHT--TTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccc-cceeeecccccccc-cc---ccccccc---ccCCccCHHHHHHHHh--CCCC
Confidence 467999999999999999999988997 88888888766543 23 3344422 3555554333332221 1236
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|+++.+.|
T Consensus 95 ~d~v~d~~g 103 (183)
T d1pqwa_ 95 VDVVLNSLA 103 (183)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeccc
Confidence 999999887
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.38 E-value=0.00015 Score=59.91 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+++|||+||+||+|...++..-..|+..|+.++++.++...+..++. .. ...|..+++. .+.++++.. ..+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g---ad---~vi~~~~~~~-~~~~~~~~~--~Gv 101 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG---FD---AAVNYKTGNV-AEQLREACP--GGV 101 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC---CS---EEEETTSSCH-HHHHHHHCT--TCE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc---ce---EEeeccchhH-HHHHHHHhc--cCc
Confidence 47999999999999999988878998677777777776666665553 22 2245555443 333333322 369
Q ss_pred cEEEecCcc
Q 015844 166 DVLVCNAAV 174 (399)
Q Consensus 166 d~lv~nAg~ 174 (399)
|+++.+.|.
T Consensus 102 Dvv~D~vGg 110 (187)
T d1vj1a2 102 DVYFDNVGG 110 (187)
T ss_dssp EEEEESSCH
T ss_pred eEEEecCCc
Confidence 999998873
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.34 E-value=0.00072 Score=54.58 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC-C
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g 163 (399)
.|.+++|+| +|+||...++.+...|+ +|+++++++++.+.+.+ + +.... +..|-.+ ++.....+.+.+.. .
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~-~---ga~~~-~~~~~~~-~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN-C---GADVT-LVVDPAK-EEESSIIERIRSAIGD 97 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH-T---TCSEE-EECCTTT-SCHHHHHHHHHHHSSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcc-cccccchHHHHHHHHHH-c---CCcEE-Eeccccc-cccchhhhhhhccccc
Confidence 356899997 68999999999989997 89999999888665433 3 33322 2233222 22333444554443 4
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.++|.
T Consensus 98 g~D~vid~~g~ 108 (170)
T d1e3ja2 98 LPNVTIDCSGN 108 (170)
T ss_dssp CCSEEEECSCC
T ss_pred CCceeeecCCC
Confidence 69999999985
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0012 Score=53.43 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.+++|.|+ |++|...++.+...|+.+|+++++++++.+.+ +++ |.. +++..+-.+.....+.++... ...
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~---Ga~-~~~~~~~~~~~~~~~~~~~~~--g~g 97 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI---GAD-LVLQISKESPQEIARKVEGQL--GCK 97 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT---TCS-EEEECSSCCHHHHHHHHHHHH--TSC
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHh---CCc-ccccccccccccccccccccC--CCC
Confidence 3568999986 99999999999999987899999998877654 333 333 233344445555544444322 247
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 98 ~Dvvid~~G~ 107 (171)
T d1pl8a2 98 PEVTIECTGA 107 (171)
T ss_dssp CSEEEECSCC
T ss_pred ceEEEeccCC
Confidence 9999999985
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.27 E-value=0.00053 Score=55.43 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.+.+++|+|++|++|..+++.+...|+.+|+++++++++.+.+.+ + |... + .|.++.+..+++.+.. ..+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~---Ga~~-~--i~~~~~~~~~~~~~~~--~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-A---GADY-V--INASMQDPLAEIRRIT--ESKG 97 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-H---TCSE-E--EETTTSCHHHHHHHHT--TTSC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-c---CCce-e--eccCCcCHHHHHHHHh--hccc
Confidence 367899999999999999999998997799999999877655433 3 3332 2 3445544444443322 1246
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 98 ~d~vid~~g~ 107 (170)
T d1jvba2 98 VDAVIDLNNS 107 (170)
T ss_dssp EEEEEESCCC
T ss_pred chhhhccccc
Confidence 9999999885
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.23 E-value=0.0018 Score=51.03 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=72.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
+..++++.|+|+ |.+|..+|..|+..| +..+++++++++.++.....+.. ....+.+...|. +
T Consensus 3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~---~-------- 70 (148)
T d1ldna1 3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY---D-------- 70 (148)
T ss_dssp TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG---G--------
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH---H--------
Confidence 345678889996 999999999999987 45899999998776655444432 123344434332 1
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
....-|++|.++|..... ..+. .+.+..|. .+.+.+.+.+.+.. +++.+|++|-
T Consensus 71 ---~l~daDvvvitag~~~~~----~~~R---~dl~~~N~----~i~~~i~~~i~~~~-p~a~~ivvtN 124 (148)
T d1ldna1 71 ---DCRDADLVVICAGANQKP----GETR---LDLVDKNI----AIFRSIVESVMASG-FQGLFLVATN 124 (148)
T ss_dssp ---GTTTCSEEEECCSCCCCT----TTCS---GGGHHHHH----HHHHHHHHHHHHHT-CCSEEEECSS
T ss_pred ---HhccceeEEEeccccccc----Ccch---hHHHHHHH----HHHHHHHHHHHhhC-CCceEEEecC
Confidence 123589999999975321 1222 23344454 34455555555543 3567777653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.21 E-value=0.00023 Score=58.11 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.++||+||+||+|...++.....|+ +|+.+++++++.+.+. ++ |.... + |-.+. ..+.+..+ ..++
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~-~l---Ga~~v-i--~~~~~--~~~~~~~~--~~~g 98 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLR-VL---GAKEV-L--AREDV--MAERIRPL--DKQR 98 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHH-HT---TCSEE-E--ECC-----------C--CSCC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHH-hc---cccee-e--ecchh--HHHHHHHh--hccC
Confidence 477999999999999999988888997 8999999877765443 23 34432 2 32221 12222211 2357
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 99 vD~vid~vgg 108 (176)
T d1xa0a2 99 WAAAVDPVGG 108 (176)
T ss_dssp EEEEEECSTT
T ss_pred cCEEEEcCCc
Confidence 9999999884
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00027 Score=49.01 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
++.++||+||+||+|....+.+...|+ +|+.+.+++++.+.+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYL 72 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 467899999999999999998888996 899988887776544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.20 E-value=0.00066 Score=52.42 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=55.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.++|.|+ |.+|+.+++.|.+.| +.|++++++++..+.+.+++ .+.++..|.+|++.++++- ....|.
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~------i~~a~~ 68 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAG------IEDADM 68 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcC------hhhhhh
Confidence 5888887 999999999999999 69999999998887765543 3567889999998776551 125666
Q ss_pred EEe
Q 015844 168 LVC 170 (399)
Q Consensus 168 lv~ 170 (399)
+|.
T Consensus 69 vv~ 71 (132)
T d1lssa_ 69 YIA 71 (132)
T ss_dssp EEE
T ss_pred hcc
Confidence 665
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00073 Score=54.72 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=56.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++||.+||.|+ ||-+++++..|.+.|+ +|.++.|+.++.+++.+.+...+ .+..+ +..+. ..
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~-~~~~~--~~~~~------------~~ 77 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTG-SIQAL--SMDEL------------EG 77 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGS-SEEEC--CSGGG------------TT
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhcc-ccccc--ccccc------------cc
Confidence 567899999997 8999999999999997 89999999999998888775442 23222 22211 12
Q ss_pred CCccEEEecCcc
Q 015844 163 RPLDVLVCNAAV 174 (399)
Q Consensus 163 g~id~lv~nAg~ 174 (399)
...|++||+.-+
T Consensus 78 ~~~dliIN~Tp~ 89 (170)
T d1nyta1 78 HEFDLIINATSS 89 (170)
T ss_dssp CCCSEEEECCSC
T ss_pred cccceeeccccc
Confidence 368999998755
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.15 E-value=0.00059 Score=55.35 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|+++||+||+|++|...++.+...|+ +|+.+++++++.+.+. ++ |.... .|..+. .+++.. ..+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~-~l---Ga~~~---i~~~~~------~~~~~~-~~g 91 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL-AL---GAEEA---ATYAEV------PERAKA-WGG 91 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH-HT---TCSEE---EEGGGH------HHHHHH-TTS
T ss_pred CCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccc-cc---cccee---eehhhh------hhhhhc-ccc
Confidence 578999999999999999998888997 8998888876655443 33 33322 243322 122222 346
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
+|+++.+.|
T Consensus 92 ~D~v~d~~G 100 (171)
T d1iz0a2 92 LDLVLEVRG 100 (171)
T ss_dssp EEEEEECSC
T ss_pred ccccccccc
Confidence 999999766
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.15 E-value=0.0033 Score=49.10 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=67.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++.|+||+|.+|.++|..|+..|. ..+++++.++.+.+. ..+....... ....-+ ...+..+.+ ..-|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~~~~~-~~~~~~-~~~~~~~~~-------~~aD 70 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHIETRA-TVKGYL-GPEQLPDCL-------KGCD 70 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTSSSSC-EEEEEE-SGGGHHHHH-------TTCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhhhhhc-CCCeEE-cCCChHHHh-------CCCC
Confidence 578999999999999999998883 789999987654332 2333221111 111111 122222222 2699
Q ss_pred EEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 167 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
++|..||.... + .++. .+.++.|..-.-. +.+.+.+.. +++.|+++|.
T Consensus 71 ivVitag~~~~--~--g~sR---~~ll~~N~~i~~~----i~~~i~~~~-p~~iiivvtN 118 (144)
T d1mlda1 71 VVVIPAGVPRK--P--GMTR---DDLFNTNATIVAT----LTAACAQHC-PDAMICIISN 118 (144)
T ss_dssp EEEECCSCCCC--T--TCCG---GGGHHHHHHHHHH----HHHHHHHHC-TTSEEEECSS
T ss_pred EEEECCCcCCC--C--CCCc---chHHHHHHHHHHH----HHHHHHhcC-CCeEEEEecC
Confidence 99999997422 1 2233 3346667655544 444444443 3467777764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.04 E-value=0.00067 Score=55.19 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.+++|.|+ ||||...++.+...|+.+|+++++++++.+.+. ++ |.. + .+|..+.+..+++.+ +.. ...
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~l---Ga~-~--~i~~~~~~~~~~v~~-~t~-g~G 96 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FY---GAT-D--ILNYKNGHIEDQVMK-LTN-GKG 96 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HH---TCS-E--EECGGGSCHHHHHHH-HTT-TSC
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hh---Ccc-c--cccccchhHHHHHHH-Hhh-ccC
Confidence 4668999976 899999999998899878999999987765543 34 222 2 235554333333332 221 235
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 97 ~D~vid~~g~ 106 (174)
T d1jqba2 97 VDRVIMAGGG 106 (174)
T ss_dssp EEEEEECSSC
T ss_pred cceEEEccCC
Confidence 9999999985
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.02 E-value=0.0016 Score=53.96 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.+++|.|+ |+||...+..+...|+.+|+++++++++++.+. ++ |... ..|-.+. ++.+.+.++. ....
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~---Ga~~---~~~~~~~-~~~~~i~~~t-~g~g 94 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQ---GFEI---ADLSLDT-PLHEQIAALL-GEPE 94 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---TCEE---EETTSSS-CHHHHHHHHH-SSSC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhh-hc---cccE---EEeCCCc-CHHHHHHHHh-CCCC
Confidence 4779999986 899999888888889889999999987766443 33 3322 2233343 3333333332 2346
Q ss_pred ccEEEecCccc
Q 015844 165 LDVLVCNAAVY 175 (399)
Q Consensus 165 id~lv~nAg~~ 175 (399)
+|++|.+.|..
T Consensus 95 ~D~vid~vG~~ 105 (195)
T d1kola2 95 VDCAVDAVGFE 105 (195)
T ss_dssp EEEEEECCCTT
T ss_pred cEEEEECcccc
Confidence 99999999853
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.97 E-value=0.0043 Score=48.56 Aligned_cols=113 Identities=13% Similarity=0.071 Sum_probs=67.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc---CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.+++.|.|+ |.+|..+|..|+..| +..|++++++++.++.....+.. ..........|. + .
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~-----------~ 69 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S-----------D 69 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G-----------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H-----------H
Confidence 457888895 999999999999988 46899999998766654444422 122233444443 1 1
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
....|++|.+||..... ..+ -...+..|. .+.+.+.+.+.+.. +++.++++|
T Consensus 70 ~~~adivvitag~~~~~----g~~---r~~l~~~N~----~i~~~~~~~i~~~~-p~aivivvt 121 (146)
T d1ez4a1 70 CKDADLVVITAGAPQKP----GES---RLDLVNKNL----NILSSIVKPVVDSG-FDGIFLVAA 121 (146)
T ss_dssp GTTCSEEEECCCC-----------------CHHHHH----HHHHHHHHHHHHTT-CCSEEEECS
T ss_pred hccccEEEEecccccCC----CCC---HHHHHHHHH----HHHHHHHHHHhhcC-CCcEEEEeC
Confidence 23689999999974221 112 233344554 44555666666554 346666655
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.96 E-value=0.0011 Score=53.94 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
+|.+++|.|+ ||+|...+..+...|+.+|+.+++++++.+.+.+ + +.... .|..+ .+.+.+..+... .+
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~-~---Ga~~~---i~~~~~~~~~~~~~~~~~--~~ 97 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-V---GATEC---VNPQDYKKPIQEVLTEMS--NG 97 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T---TCSEE---ECGGGCSSCHHHHHHHHT--TS
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH-h---CCeeE---EecCCchhHHHHHHHHHh--cC
Confidence 4779999998 7899999999999998899999999888665433 2 22222 22222 223444444332 35
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.+.|.
T Consensus 98 G~D~vid~~G~ 108 (176)
T d2jhfa2 98 GVDFSFEVIGR 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEecCCc
Confidence 79999999886
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.93 E-value=0.009 Score=47.34 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=73.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
.++.+.+.|.|+ |.+|..+|..|+..| +..+++++++++.++..+..+.. .+........|..+
T Consensus 17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~---------- 85 (160)
T d1i0za1 17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV---------- 85 (160)
T ss_dssp CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG----------
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh----------
Confidence 445668888896 999999999999988 46899999998776555444432 12222222223221
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
...-|++|..||..... ..+. ...+..|. .+++.+.+.+.+.. +++-+|++|-
T Consensus 86 ----~~~adiVVitAg~~~~~----g~tR---~~l~~~N~----~i~~~i~~~i~~~~-p~aiiivvtN 138 (160)
T d1i0za1 86 ----TANSKIVVVTAGVRQQE----GESR---LNLVQRNV----NVFKFIIPQIVKYS-PDCIIIVVSN 138 (160)
T ss_dssp ----GTTCSEEEECCSCCCCT----TCCG---GGGHHHHH----HHHHHHHHHHHHHC-TTCEEEECSS
T ss_pred ----cccccEEEEecCCcccc----Ccch---HHHHHHHH----HHHHHHHHHHHhcC-CCcEEEEeCC
Confidence 13689999999975321 2233 23344454 45666666666654 3467777764
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0021 Score=54.33 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=54.9
Q ss_pred cccCCCEEEEEcC----------------CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecC
Q 015844 82 KTLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145 (399)
Q Consensus 82 ~~l~~k~~lVTG~----------------s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv 145 (399)
.+|+|+++|||+| ||-.|.+||+.+..+|| .|.++...... .....+..+ .+
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-~V~li~g~~~~---------~~p~~~~~~--~~ 69 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPVSL---------PTPPFVKRV--DV 69 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSCCC---------CCCTTEEEE--EC
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-chhhhhccccc---------Ccccccccc--ee
Confidence 3788999999987 78899999999999997 77766553211 011233333 45
Q ss_pred CCHHHHHHHHHHHHHcCCCccEEEecCcccC
Q 015844 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176 (399)
Q Consensus 146 s~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 176 (399)
...++....+.+. ....|++|++|++..
T Consensus 70 ~t~~~m~~~~~~~---~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 70 MTALEMEAAVNAS---VQQQNIFIGCAAVAD 97 (223)
T ss_dssp CSHHHHHHHHHHH---GGGCSEEEECCBCCS
T ss_pred hhhHHHHHHHHhh---hccceeEeeeechhh
Confidence 5566655555443 346899999999863
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.91 E-value=0.0069 Score=47.33 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=69.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhc----cCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~----~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
|++.|+|+ |.+|..+|..|+.+| +..++++++++++++.....+. ...........| .+.
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~~----------- 66 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WAA----------- 66 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GGG-----------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HHH-----------
Confidence 56778895 999999999999887 4689999999877654444442 122233333333 221
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
...-|++|..||.......-...+ -...+..|. .+++.+.+.+.+.. +++.+|++|-
T Consensus 67 l~~adiVVitaG~~~~~~~~~g~~---R~~l~~~N~----~i~~~i~~~i~~~~-p~aivivvtN 123 (146)
T d1hyha1 67 LADADVVISTLGNIKLQQDNPTGD---RFAELKFTS----SMVQSVGTNLKESG-FHGVLVVISN 123 (146)
T ss_dssp GTTCSEEEECCSCGGGTC----------CTTHHHHH----HHHHHHHHHHHHTT-CCSEEEECSS
T ss_pred hccccEEEEeccccccccccCCcc---HHHHHHHHH----HHHHHHHHHHhhcC-CCeEEEEecC
Confidence 126899999999753211100111 122344443 45667777776654 3567777653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.90 E-value=0.0016 Score=52.96 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHH-HHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~-v~~~~~~~~~~~g 163 (399)
+|.+++|+|+ ||+|...++.+...|+.+|+++++++++++.+. ++ |.... + |..+.+. .+.+.+. .. .+
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak-~~---GA~~~-i--n~~~~~~~~~~~~~~-~~-g~ 98 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM-AV---GATEC-I--SPKDSTKPISEVLSE-MT-GN 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HH---TCSEE-E--CGGGCSSCHHHHHHH-HH-TS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHH-hc---CCcEE-E--CccccchHHHHHHHH-hc-cc
Confidence 4779999986 899999999999999879999999998877544 33 33322 2 3232222 2222222 22 34
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.+.|.
T Consensus 99 G~d~vi~~~g~ 109 (176)
T d1d1ta2 99 NVGYTFEVIGH 109 (176)
T ss_dssp CCCEEEECSCC
T ss_pred cceEEEEeCCc
Confidence 69999999885
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.89 E-value=0.0058 Score=48.47 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=70.6
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
++...+.|+|+ |.+|..+|..|+..| +..+++++++++.++..+..+.. .+........|..
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~------------ 83 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN------------ 83 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG------------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh------------
Confidence 44456888885 999999999999887 45899999998776655444432 1222222223321
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
....-|++|..||..... ..+..+ .+..|. .+.+.+.+.+.+.. +++.++++|-
T Consensus 84 --~~~~adivvitag~~~~~----~~~R~d---ll~~N~----~i~~~i~~~i~~~~-p~~ivivvtN 137 (159)
T d2ldxa1 84 --VSANSKLVIITAGARMVS----GQTRLD---LLQRNV----AIMKAIVPGVIQNS-PDCKIIVVTN 137 (159)
T ss_dssp --GGTTEEEEEECCSCCCCT----TTCSSC---TTHHHH----HHHHHHTTTHHHHS-TTCEEEECSS
T ss_pred --hhccccEEEEecccccCC----CCCHHH---HHHHHH----HHHHHHHHHHhccC-CCeEEEEeCC
Confidence 123689999999975322 223222 244444 34555566555544 3567777764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.86 E-value=0.0024 Score=51.60 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=57.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.+++|+++|.|+ ||-+++++..|.+.+ .+|+++.|+.++++...+.+... ..+..+..|-. ..
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~-~~~~~~~~~~~--------------~~ 77 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPY-GNIQAVSMDSI--------------PL 77 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGG-SCEEEEEGGGC--------------CC
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhc-cccchhhhccc--------------cc
Confidence 467899999876 788999999999866 69999999999999888887643 23444443311 13
Q ss_pred CCccEEEecCccc
Q 015844 163 RPLDVLVCNAAVY 175 (399)
Q Consensus 163 g~id~lv~nAg~~ 175 (399)
...|++||+....
T Consensus 78 ~~~diiIN~tp~g 90 (171)
T d1p77a1 78 QTYDLVINATSAG 90 (171)
T ss_dssp SCCSEEEECCCC-
T ss_pred cccceeeeccccc
Confidence 4799999997654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.81 E-value=0.0038 Score=50.44 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.+++|.|+ |+||...++.+...|+.+|+++++++.+.+.+. ++ |.. ++ .|..+++..+ .+.++. .++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~---Ga~-~~--i~~~~~~~~~-~i~~~t--~gg 96 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL---GAT-HV--INSKTQDPVA-AIKEIT--DGG 96 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH---TCS-EE--EETTTSCHHH-HHHHHT--TSC
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-Hc---CCe-EE--EeCCCcCHHH-HHHHHc--CCC
Confidence 4678999987 899999999988889877788888877766543 34 222 22 3555543333 233332 247
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 97 ~D~vid~~G~ 106 (174)
T d1f8fa2 97 VNFALESTGS 106 (174)
T ss_dssp EEEEEECSCC
T ss_pred CcEEEEcCCc
Confidence 9999999985
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.77 E-value=0.012 Score=46.45 Aligned_cols=116 Identities=11% Similarity=0.023 Sum_probs=65.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc--------EEEEeecChHHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKW--------HIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~--------~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.+.|+||+|.+|..++..|+..+.. .++...++.+..+.....+... ......+...-.+.+.
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 77 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVA-------- 77 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH--------
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhh--------
Confidence 6999999999999999999976521 2333445555555554444332 1223333333222211
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
+...|++|..||.... +..+.++ .+..|+. +++.+.+.+.+...+.+.|+.+|
T Consensus 78 ---~~~advViitaG~~~~----pg~~r~d---l~~~N~~----i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 78 ---FKDADYALLVGAAPRK----AGMERRD---LLQVNGK----IFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp ---TTTCSEEEECCCCCCC----TTCCHHH---HHHHHHH----HHHHHHHHHHHHSCTTCEEEECS
T ss_pred ---cccccEEEeecCcCCC----CCCcHHH---HHHHHHH----HHHHHHHHHHHhCCCCcEEEEec
Confidence 2369999999998522 1334433 3445544 45555555555322235566655
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.76 E-value=0.016 Score=44.92 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=69.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecC--hHHHHHHHHHhcc---CCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRD--FLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~--~~~~~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
++.|+|++|.+|..+|..++.+| +..+++++.+ ++.++.....+.. ..........|. ++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~~----------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---ED----------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---GG-----------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---HH-----------
Confidence 57899999999999999999987 4578998854 3333322222321 123334333333 21
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
...-|++|..||.... + ..+ -.+.+..|. .+.+.+.+.+.+.. +++.++++|-
T Consensus 68 ~~~aDiVvitaG~~~~--~--g~~---R~dl~~~N~----~I~~~i~~~i~~~~-p~~i~ivvtN 120 (142)
T d1o6za1 68 TAGSDVVVITAGIPRQ--P--GQT---RIDLAGDNA----PIMEDIQSSLDEHN-DDYISLTTSN 120 (142)
T ss_dssp GTTCSEEEECCCCCCC--T--TCC---HHHHHHHHH----HHHHHHHHHHHTTC-SCCEEEECCS
T ss_pred hhhcCEEEEecccccc--c--CCc---hhhHHHHHH----HHHHHHHHHHHhcC-CCceEEEecC
Confidence 1269999999997422 1 223 334455554 46677777777665 3567777653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.74 E-value=0.0026 Score=51.31 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.+++|.|+ |++|...++.+...|+.+|+++++++++.+.+.+ + +.. +++ |..+ +.++...+.. ....
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~---ga~-~~i--~~~~-~~~~~~~~~~--~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-L---GAD-HVV--DARR-DPVKQVMELT--RGRG 100 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-T---TCS-EEE--ETTS-CHHHHHHHHT--TTCC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-c---ccc-eee--cCcc-cHHHHHHHhh--CCCC
Confidence 4678999885 9999999999888898788889998877654443 2 232 222 3332 3344444322 1236
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.++|.
T Consensus 101 ~d~vid~~g~ 110 (172)
T d1h2ba2 101 VNVAMDFVGS 110 (172)
T ss_dssp EEEEEESSCC
T ss_pred ceEEEEecCc
Confidence 9999999985
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.70 E-value=0.0028 Score=51.31 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
.|.+++|.|+ ||||...++.+...|+.+|+++++++++.+. .+++ |... ++ |... .+.++...+... .+
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~-a~~~---Ga~~-~i--~~~~~~~~~~~~~~~~~--~~ 97 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPK-AKAL---GATD-CL--NPRELDKPVQDVITELT--AG 97 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHT---TCSE-EE--CGGGCSSCHHHHHHHHH--TS
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHH-HHHh---CCCc-cc--CCccchhhhhhhHhhhh--cC
Confidence 4679999975 9999999999999998889999999887654 3334 2222 22 2221 123333333332 35
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.++|.
T Consensus 98 G~d~vie~~G~ 108 (174)
T d1e3ia2 98 GVDYSLDCAGT 108 (174)
T ss_dssp CBSEEEESSCC
T ss_pred CCcEEEEeccc
Confidence 79999999985
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.68 E-value=0.0021 Score=51.97 Aligned_cols=80 Identities=18% Similarity=0.129 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCC-HHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (399)
+|.+++|.|+ ||+|...++.+...|+.+|+.+++++++.+. .+++. ... ++ |..+ .+.+.+.++... .+
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~lG---a~~-~i--~~~~~~~~~~~~~~~~~--~~ 97 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEFG---ATE-CI--NPQDFSKPIQEVLIEMT--DG 97 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHHT---CSE-EE--CGGGCSSCHHHHHHHHT--TS
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHhC---CcE-EE--eCCchhhHHHHHHHHHc--CC
Confidence 4779999987 6999999999999998788888888877554 44442 222 22 2222 233444444332 34
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.+.|.
T Consensus 98 g~D~vid~~G~ 108 (176)
T d2fzwa2 98 GVDYSFECIGN 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEeeecCCC
Confidence 79999999884
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.53 E-value=0.016 Score=45.54 Aligned_cols=122 Identities=15% Similarity=0.080 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+.+++.|.|+ |.+|..+|..|+..|...+++++.+++.++..+..+.. .+....... + ++.+ ..+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~-~-~~~~---~~~----- 74 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E-YSYE---AAL----- 74 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E-CSHH---HHH-----
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec-c-Cchh---hhh-----
Confidence 3467888897 99999999999988855899999887665544444321 111211111 1 1221 111
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
..-|++|..+|........ .....-...+..|.. +++.+.+.+.+.. +++.|+++|.
T Consensus 75 --~~adiVvitag~~~~~g~~--~~~~tR~~l~~~n~~----iv~~i~~~i~~~~-p~aiviivsN 131 (154)
T d1pzga1 75 --TGADCVIVTAGLTKVPGKP--DSEWSRNDLLPFNSK----IIREIGQNIKKYC-PKTFIIVVTN 131 (154)
T ss_dssp --TTCSEEEECCSCSSCTTCC--GGGCCGGGGHHHHHH----HHHHHHHHHHHHC-TTCEEEECCS
T ss_pred --cCCCeEEEecccccCCCCC--CcccchhhhhhhhHH----HHHHHHHHHHhcC-CCcEEEEeCC
Confidence 2689999999985322110 011112233444544 4455555555443 2466776654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.045 Score=42.40 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=65.9
Q ss_pred EEEEEcCCChHHHHHHHHHHH-cC-CcEEEEeecChHHHHHHHHHhccCCCcEE-EEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 88 SVIITGASSGLGLATAKALAE-TG-KWHIIMACRDFLKAERAAKSAGMAKENYT-IMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~-~G-a~~vv~~~r~~~~~~~~~~~~~~~~~~~~-~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++.|+|++|.+|.++|..|+. .+ +..+++++..+ ..+.....+........ ....+-.+.+.+ + .
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~----~-------~ 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPAL----E-------G 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHH----T-------T
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCcccc----C-------C
Confidence 578999999999999998864 34 46899999864 33333334433222111 112233333321 1 5
Q ss_pred ccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 165 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
-|++|..||.... + ..+. .+.+..|.. +.+...+.+.+.. +++.||++|.
T Consensus 70 aDvvvitaG~~~k--~--g~~R---~dl~~~N~~----i~~~v~~~i~~~~-p~aivivvtN 119 (145)
T d2cmda1 70 ADVVLISAGVRRK--P--GMDR---SDLFNVNAG----IVKNLVQQVAKTC-PKACIGIITN 119 (145)
T ss_dssp CSEEEECCSCCCC--T--TCCG---GGGHHHHHH----HHHHHHHHHHHHC-TTSEEEECSS
T ss_pred CCEEEECCCccCC--C--Ccch---hhHHHHHHH----HHHHHHHHHHhhC-CCcEEEEccC
Confidence 7999999997422 1 2233 344566654 4444455555443 3467777764
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.51 E-value=0.029 Score=43.82 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=69.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++.|.|+ |.+|..+|..|+..+...+++++++++.++.....+.. .+.+..+...| +.+ ...
T Consensus 5 KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~-----------~~~ 70 (150)
T d1t2da1 5 KIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TYD-----------DLA 70 (150)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGG-----------GGT
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--ccc-----------ccC
Confidence 5777885 99999999999998877999999987666555444422 12233333322 111 123
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
.-|++|.++|....... ......-...+..|. .+.+.+.+.+.+.. +++.++++|-
T Consensus 71 ~advvvitag~~~~~g~--~~~~~~R~~l~~~N~----~iv~~i~~~i~~~~-p~aivivvtN 126 (150)
T d1t2da1 71 GADVVIVTAGFTKAPGK--SDKEWNRDDLLPLNN----KIMIEIGGHIKKNC-PNAFIIVVTN 126 (150)
T ss_dssp TCSEEEECCSCSSCTTC--CSTTCCGGGGHHHHH----HHHHHHHHHHHHHC-TTSEEEECSS
T ss_pred CCcEEEEecccccCCCC--CccccchhHHHHHHH----HHHHHHHHHHHhcC-CCeEEEEecC
Confidence 68999999997532211 101112233455564 44555555555544 3466777654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.51 E-value=0.0066 Score=48.95 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHH-HHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD-SVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~-~v~~~~~~~~~~~g 163 (399)
.|.+++|.|+ ||+|...++.+...|+.+|+.+++++++++.+. ++ |... + .|.++.+ .+.+..... ..+
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~l---Ga~~-~--i~~~~~d~~~~~~~~~~--~~~ 96 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL---GATE-C--LNPKDYDKPIYEVICEK--TNG 96 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT---TCSE-E--ECGGGCSSCHHHHHHHH--TTS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH-Hc---CCcE-E--EcCCCchhHHHHHHHHh--cCC
Confidence 4779999986 899999999999999889999999988876553 33 3332 2 2333222 123333222 235
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|++|.+.|.
T Consensus 97 G~d~vid~~g~ 107 (174)
T d1p0fa2 97 GVDYAVECAGR 107 (174)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEEcCCC
Confidence 79999999885
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.51 E-value=0.0013 Score=50.77 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=52.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|.++|.|+ |-+|+.+|+.|.+.| ..|++++.+++..+.+. ..+ ..++.+|.++++.++++- + ...|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~----~~~--~~~~~gd~~~~~~l~~a~--i----~~a~ 66 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDINEEKVNAYA----SYA--THAVIANATEENELLSLG--I----RNFE 66 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTT----TTC--SEEEECCTTCTTHHHHHT--G----GGCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHH----HhC--CcceeeecccchhhhccC--C----cccc
Confidence 46788876 799999999999999 59999999987766543 223 345678999988776541 1 2467
Q ss_pred EEEecC
Q 015844 167 VLVCNA 172 (399)
Q Consensus 167 ~lv~nA 172 (399)
.+|...
T Consensus 67 ~vi~~~ 72 (134)
T d2hmva1 67 YVIVAI 72 (134)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 666543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.47 E-value=0.0011 Score=53.36 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~ 128 (399)
++.++||+||+||+|...++..-..|| +|+.+++++++.+.+.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~ 65 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLK 65 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHH
Confidence 356899999999999999988888897 8999999877766543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0067 Score=48.53 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
.|.+++|.|+ |+||...++.+-..|+ ++++++++.++.+ ..+++ |... .+|..+.+... .....
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga-~~i~~~~~~~~~~-~a~~l---Gad~---~i~~~~~~~~~-------~~~~~ 93 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSEAKRE-AAKAL---GADE---VVNSRNADEMA-------AHLKS 93 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSGGGHH-HHHHH---TCSE---EEETTCHHHHH-------TTTTC
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccc-cchhhccchhHHH-HHhcc---CCcE---EEECchhhHHH-------HhcCC
Confidence 4679999986 9999999988888997 7777888877654 33444 3322 24666655332 22347
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
+|++|.+.|.
T Consensus 94 ~D~vid~~g~ 103 (168)
T d1uufa2 94 FDFILNTVAA 103 (168)
T ss_dssp EEEEEECCSS
T ss_pred Cceeeeeeec
Confidence 9999999885
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.0077 Score=48.16 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.+++|.|+ |++|...++.+...|+ +|+++++++++.+.+. ++ |... ++ |..+... +. ....+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~-~l---Ga~~-~i--~~~~~~~---~~---~~~~~~ 91 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGA-ETYVISRSSRKREDAM-KM---GADH-YI--ATLEEGD---WG---EKYFDT 91 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHH-HH---TCSE-EE--EGGGTSC---HH---HHSCSC
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccc-cccccccchhHHHHhh-cc---CCcE-Ee--eccchHH---HH---Hhhhcc
Confidence 4679999986 8999999988878897 8999999987766543 33 3332 22 2222111 11 223457
Q ss_pred ccEEEecCccc
Q 015844 165 LDVLVCNAAVY 175 (399)
Q Consensus 165 id~lv~nAg~~ 175 (399)
+|.+|.+.|..
T Consensus 92 ~d~vi~~~~~~ 102 (168)
T d1piwa2 92 FDLIVVCASSL 102 (168)
T ss_dssp EEEEEECCSCS
T ss_pred cceEEEEecCC
Confidence 99999988764
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.38 E-value=0.028 Score=43.64 Aligned_cols=113 Identities=19% Similarity=0.121 Sum_probs=63.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChH--HHHHHHHHhc----cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFL--KAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~--~~~~~~~~~~----~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++.|+||+|.+|..+|..|+.+| +..++++++++. +++.....+. ...........--.|.+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~----------- 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR----------- 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-----------
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-----------
Confidence 48899999999999999999988 468999998752 3333333332 12222222111111221
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEE
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIV 224 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~v 224 (399)
....-|++|.+||..... ..+. ...+..|..- .+.+.+.+.+.. + ..|+.+
T Consensus 71 ~l~~aDvVVitAG~~~~~----g~sR---~dl~~~Na~i----v~~i~~~i~~~~-~-~~iivV 121 (145)
T d1hyea1 71 IIDESDVVIITSGVPRKE----GMSR---MDLAKTNAKI----VGKYAKKIAEIC-D-TKIFVI 121 (145)
T ss_dssp GGTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHH----HHHHHHHHHHHC-C-CEEEEC
T ss_pred HhccceEEEEecccccCC----CCCh---hhhhhhhHHH----HHHHHHHHhccC-C-CeEEEE
Confidence 123689999999974221 2233 3455666554 444455554443 1 245444
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0021 Score=52.27 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~ 127 (399)
++.++||+||+||+|...++..-..|+ +|+.++|++++.+.+
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~ 72 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYL 72 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHH
Confidence 345899999999999999988888997 899999988776544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.23 E-value=0.0072 Score=48.60 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHH-HHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~-v~~~~~~~~~~~g 163 (399)
.|.+++|.|+ ||+|...+..+...|+.+|+.+++++++++.+. ++ |... ++ |..+.+. +++...... .+
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~---GAd~-~i--n~~~~~~~~~~~~~~~~--~~ 97 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---GATD-FV--NPNDHSEPISQVLSKMT--NG 97 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---TCCE-EE--CGGGCSSCHHHHHHHHH--TS
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-Hc---CCcE-EE--cCCCcchhHHHHHHhhc--cC
Confidence 4779999985 789999999999999889999999988776543 33 3322 22 3333222 233333222 24
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
.+|+++.+.|.
T Consensus 98 G~d~vid~~G~ 108 (175)
T d1cdoa2 98 GVDFSLECVGN 108 (175)
T ss_dssp CBSEEEECSCC
T ss_pred CcceeeeecCC
Confidence 79999999985
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.17 E-value=0.004 Score=49.94 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
++|.++|.|+ ||.+++++..|.+.|+.+|.++.|+.++.+.+.+.+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~ 61 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 61 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence 5678999987 899999999999999879999999999888877665
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.15 E-value=0.021 Score=44.20 Aligned_cols=112 Identities=19% Similarity=0.111 Sum_probs=65.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC----CCcEEEEEe-cCCCHHHHHHHHHHHHHc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHL-DLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~-Dvs~~~~v~~~~~~~~~~ 161 (399)
+++.|+|+ |.+|.++|..|+..+...+++++.+++..+.....+... +....+..+ |..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-------------- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-------------- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG--------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH--------------
Confidence 46777786 999999999999888658999998876655444443211 112222211 2211
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
...-|++|.+||..... ..+. .+.+..|. .+++.+.+.+.+.. +++.++++|
T Consensus 67 ~~~advvvitag~~~~~----~~~r---~dl~~~N~----~i~~~i~~~i~k~~-p~aivivvt 118 (142)
T d1uxja1 67 TANSDVIVVTSGAPRKP----GMSR---EDLIKVNA----DITRACISQAAPLS-PNAVIIMVN 118 (142)
T ss_dssp GTTCSEEEECCSCC----------------CHHHHH----HHHHHHHHHHGGGC-TTCEEEECS
T ss_pred hcCCCEEEEeeeccCCc----Ccch---hHHHhHHH----HHHHHHHHHHhccC-CCceEEEeC
Confidence 12589999999975321 1222 23344453 46777777777754 356666654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.13 E-value=0.014 Score=45.19 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=63.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++.|.|+ |.+|..+|..++..| +..+++++++++.++.....+... .........| .+ ...
T Consensus 3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~~-----------~~~ 67 (142)
T d1y6ja1 3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---YS-----------DVK 67 (142)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---GG-----------GGT
T ss_pred eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---HH-----------HhC
Confidence 4566686 999999999999887 358999999887655444444432 1222222221 11 123
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
.-|++|..||..... ..+ -...+..|. .+.+.+.+.+.+.. +++.++++|-
T Consensus 68 ~adivvitag~~~~~----~~~---r~~l~~~N~----~i~~~i~~~i~~~~-p~ai~ivvtN 118 (142)
T d1y6ja1 68 DCDVIVVTAGANRKP----GET---RLDLAKKNV----MIAKEVTQNIMKYY-NHGVILVVSN 118 (142)
T ss_dssp TCSEEEECCCC----------C---HHHHHHHHH----HHHHHHHHHHHHHC-CSCEEEECSS
T ss_pred CCceEEEecccccCc----Ccc---hhHHhhHHH----HHHHHHHHHhhccC-CCceEEEecC
Confidence 589999999975221 122 234455555 45555566666544 3466666653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.06 E-value=0.019 Score=45.54 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+|.+++|.|+ |+||...++.+...|+ +|+.+++++++.+.+. ++ |... + .|.++.+..+.+.+ ..+.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~-~~---Ga~~-~--i~~~~~~~~~~~~~----~~~g 93 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGL-HVAAIDIDDAKLELAR-KL---GASL-T--VNARQEDPVEAIQR----DIGG 93 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH-HT---TCSE-E--EETTTSCHHHHHHH----HHSS
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCC-ccceecchhhHHHhhh-cc---Cccc-c--ccccchhHHHHHHH----hhcC
Confidence 4678999876 9999999998888995 9999999987766443 33 3332 2 35555544444333 2234
Q ss_pred ccEEEecCc
Q 015844 165 LDVLVCNAA 173 (399)
Q Consensus 165 id~lv~nAg 173 (399)
.|.+|.+++
T Consensus 94 ~~~~i~~~~ 102 (166)
T d1llua2 94 AHGVLVTAV 102 (166)
T ss_dssp EEEEEECCS
T ss_pred Ccccccccc
Confidence 555555544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.01 E-value=0.079 Score=42.32 Aligned_cols=117 Identities=10% Similarity=-0.031 Sum_probs=63.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC----c--EEEEeecCh--HHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGK----W--HIIMACRDF--LKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDT 157 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga----~--~vv~~~r~~--~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~ 157 (399)
-.|.||||+|.||..++..|++... . .+.+.+.+. +.++...-++.... .....+..- ++..
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~-~~~~-------- 95 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-IDPY-------- 95 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SCHH--------
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc-ccch--------
Confidence 3699999999999999999987431 1 444555443 34444444443321 112211111 2211
Q ss_pred HHHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
+.+...|++|..+|..... .++.+ +.+..|.. +.+...+.+.+...+..+|+.+|
T Consensus 96 --~~~~~aDvVvi~ag~~rkp----g~tR~---Dll~~N~~----I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 96 --EVFEDVDWALLIGAKPRGP----GMERA---ALLDINGQ----IFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp --HHTTTCSEEEECCCCCCCT----TCCHH---HHHHHHHH----HHHHHHHHHHHHSCTTCEEEECS
T ss_pred --hhccCCceEEEeeccCCCC----CCcHH---HHHHHHHH----HHHHHHHHHHhhCCCCcEEEEec
Confidence 1133799999999985221 33444 45556644 44555555555322234565554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.01 E-value=0.01 Score=46.51 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=53.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+..-+++.|.||.|-+|..+|+.|.+.| +.|.+.+|+.....+... .+..+..... ....+...+.++....
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~~~~~~~~~----~~~~~v~~~~---~~~~~~~v~~~~~~~~ 77 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASG-YPISILDREDWAVAESIL----ANADVVIVSV---PINLTLETIERLKPYL 77 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCGGGHHHHH----TTCSEEEECS---CGGGHHHHHHHHGGGC
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEecccccccccchhh----hhcccccccc---chhhheeeeecccccc
Confidence 4456789999999999999999999999 699999998755443222 1234443333 3445666666665544
Q ss_pred CCccEEEecC
Q 015844 163 RPLDVLVCNA 172 (399)
Q Consensus 163 g~id~lv~nA 172 (399)
.+=.+++..+
T Consensus 78 ~~~~iiiD~~ 87 (152)
T d2pv7a2 78 TENMLLADLT 87 (152)
T ss_dssp CTTSEEEECC
T ss_pred cCCceEEEec
Confidence 3323444443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.042 Score=42.29 Aligned_cols=111 Identities=22% Similarity=0.176 Sum_probs=67.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc---CCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++.|.|+ |.+|..+|..++..| +..+++++++++.++.....+.. ..........| .++ ..
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~~~-----------~~ 66 (140)
T d1a5za1 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---YAD-----------LK 66 (140)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---GGG-----------GT
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---HHH-----------hc
Confidence 4567786 899999999998877 35899999998776654444321 11233333333 221 12
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
.-|++|.+||..... ..+. .+.+..|. .+.+.+.+.+.+.. |++.++++|
T Consensus 67 ~adivvitag~~~~~----g~~r---~dl~~~N~----~I~~~i~~~i~~~~-p~aivivvt 116 (140)
T d1a5za1 67 GSDVVIVAAGVPQKP----GETR---LQLLGRNA----RVMKEIARNVSKYA-PDSIVIVVT 116 (140)
T ss_dssp TCSEEEECCCCCCCS----SCCH---HHHHHHHH----HHHHHHHHHHHHHC-TTCEEEECS
T ss_pred CCCEEEEecccccCC----Ccch---hhhhcccc----chHHHHHHHHHhcC-CCcEEEEeC
Confidence 589999999975321 2232 23344554 45566666666654 356666665
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.98 E-value=0.064 Score=41.34 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=66.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++.|+|+ |.+|.++|..|+.+| +..+++++++++.++.....+... ......... .+.+. ..
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~~-----------~~ 68 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPEI-----------CR 68 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGGG-----------GT
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCHHH-----------hh
Confidence 4667786 999999999999888 468999999987765444433321 112222222 11211 12
Q ss_pred CccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 164 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
.-|++|..||..... ..+.. +.+..|. .+.+.+.+.+.+.. +++.++++|
T Consensus 69 daDvVVitaG~~~~~----g~~R~---dl~~~N~----~i~~~i~~~i~~~~-p~ai~ivvt 118 (143)
T d1llda1 69 DADMVVITAGPRQKP----GQSRL---ELVGATV----NILKAIMPNLVKVA-PNAIYMLIT 118 (143)
T ss_dssp TCSEEEECCCCCCCT----TCCHH---HHHHHHH----HHHHHHHHHHHHHC-TTSEEEECC
T ss_pred CCcEEEEecccccCC----CCchh---hhhhhhH----HHHHHHHHHHHhhC-CCeEEEEeC
Confidence 589999999974221 22333 3455565 34555555555544 246666665
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.95 E-value=0.026 Score=41.71 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=52.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH-HHHHHHHHhc-----c-CC----CcEEEEEecCCCHHH
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAG-----M-AK----ENYTIMHLDLASLDS 150 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~-~~~~~~~~~~-----~-~~----~~~~~~~~Dvs~~~~ 150 (399)
.+++||++||.|| |.+|..-++.|++.|| +|++++.... ......+.-. . .. .....+.+...|.+-
T Consensus 8 l~l~~k~vlVvG~-G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~ 85 (113)
T d1pjqa1 8 CQLRDRDCLIVGG-GDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTV 85 (113)
T ss_dssp ECCBTCEEEEECC-SHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHH
T ss_pred EEeCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHH
Confidence 4789999999997 5799999999999997 8888776543 3333322110 0 00 112333344455554
Q ss_pred HHHHHHHHHHcCCCccEEEecCc
Q 015844 151 VRQFVDTFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~nAg 173 (399)
-.++.+..++ -.++||.+-
T Consensus 86 n~~i~~~a~~----~~ilVNv~D 104 (113)
T d1pjqa1 86 NQRVSDAAES----RRIFCNVVD 104 (113)
T ss_dssp HHHHHHHHHH----TTCEEEETT
T ss_pred HHHHHHHHHH----cCCEEEeCC
Confidence 4555555543 457788664
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.69 E-value=0.12 Score=39.57 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=65.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhccC----CCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.|+|+ |.+|..++..|+..| +..+++++.+++.++.....+... .....+... .+.+. .
T Consensus 2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~-----------~ 67 (142)
T d1guza1 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYAD-----------T 67 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGG-----------G
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHH-----------h
Confidence 3667786 999999999999987 468999999886655443333221 223333322 22221 1
Q ss_pred CCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 163 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
...|++|.+||..... ..+. ...+..|.. +.+.+.+.+.+.. +++.++++|
T Consensus 68 ~dadvvvitag~~~~~----g~~r---~~l~~~N~~----i~~~i~~~i~~~~-p~aivivvt 118 (142)
T d1guza1 68 ANSDIVIITAGLPRKP----GMTR---EDLLMKNAG----IVKEVTDNIMKHS-KNPIIIVVS 118 (142)
T ss_dssp TTCSEEEECCSCCCCT----TCCH---HHHHHHHHH----HHHHHHHHHHHHC-SSCEEEECC
T ss_pred cCCeEEEEEEecCCCC----CCch---HHHHHHHHH----HHHHHHHHhhccC-CCeEEEEec
Confidence 2689999999974321 1222 233445544 4444555555443 346666664
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.03 Score=43.71 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=55.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCccE
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (399)
.++|.|. |-+|..+++.|.+.| ..|+++..+++......+.... ..+.++.+|.+|++.++++- ....|.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~~--~~~~vi~Gd~~d~~~L~~a~------i~~a~~ 74 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKKAG------IDRCRA 74 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHHHT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhhc--CCcEEEEccCcchHHHHHhc------cccCCE
Confidence 4777777 699999999999999 5899998887765555554432 35678899999998765542 135677
Q ss_pred EEecC
Q 015844 168 LVCNA 172 (399)
Q Consensus 168 lv~nA 172 (399)
+|...
T Consensus 75 vi~~~ 79 (153)
T d1id1a_ 75 ILALS 79 (153)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 76553
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.39 E-value=0.081 Score=41.59 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=54.1
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc----------cCCCcEEEEEecCCCHHHHHHHHHHH
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG----------MAKENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
+.|.| .|-+|..+|+.|.+.| +.|++++|+++..+.+.+.-. -...++.++.+ ..+.++++++++
T Consensus 3 I~iIG-~G~mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l 77 (165)
T d2f1ka2 3 IGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKL 77 (165)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHH
T ss_pred EEEEe-ecHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhh
Confidence 56665 4999999999999999 699999999877766544210 01234444432 467788888888
Q ss_pred HHcCCCccEEEecCc
Q 015844 159 RRSGRPLDVLVCNAA 173 (399)
Q Consensus 159 ~~~~g~id~lv~nAg 173 (399)
.....+=.++++.++
T Consensus 78 ~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 78 IPHLSPTAIVTDVAS 92 (165)
T ss_dssp GGGSCTTCEEEECCS
T ss_pred hhhcccccceeeccc
Confidence 766554445555543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.22 E-value=0.047 Score=43.03 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~ 128 (399)
+|.+++|.|+ |+||...++.+...|+ +|+++++++++.+.+.
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k 68 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAK 68 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCC-eEeccCCCHHHhhhhh
Confidence 3668999865 9999999888888997 8999999987766543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.0092 Score=42.60 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=32.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
+++||+++|.|. |.-|.++|+.|.++|+ +|++.+.+.
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~-~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGV-TPRVMDTRM 38 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 578999999987 6789999999999996 888887754
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.19 E-value=0.09 Score=40.99 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=61.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCc------EEEEeecCh--HHHHHHHHHhccC-CCcEEEEEecCCCHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKW------HIIMACRDF--LKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~------~vv~~~r~~--~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~ 158 (399)
.+.|+||+|.+|..++..|+..+.. .+++.+.+. ..++....++... ......+..--.+.+ .
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~---- 76 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEI----A---- 76 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHH----H----
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCccccc----c----
Confidence 6899999999999999999875421 356665543 3344443333221 112222222111111 1
Q ss_pred HHcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEe
Q 015844 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (399)
Q Consensus 159 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vS 225 (399)
....|++|..+|..... ..+.++ .+..|. .+.+.+.+.+.+.....+.++.+|
T Consensus 77 ---~~~~dvVVitag~~~~~----g~sr~d---ll~~N~----~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 77 ---FKDLDVAILVGSMPRRD----GMERKD---LLKANV----KIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp ---TTTCSEEEECCSCCCCT----TCCTTT---THHHHH----HHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ---cCCceEEEEecccCCCC----CCchhH---HHHHhH----HHHHHHHHHHHhhCCCceEEEEec
Confidence 23699999999975321 233333 344454 455555655555321234455554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.98 E-value=0.044 Score=43.86 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=58.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc---------------CCCcEEEEEecCCCHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------------AKENYTIMHLDLASLDSVR 152 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~~Dvs~~~~v~ 152 (399)
.+-|.|- |-+|..+|+.|++.| +.|++.+|++++.+++.+.-.. .-.....+...+.+.+.+.
T Consensus 4 nIg~IGl-G~MG~~mA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 4 DIALIGL-AVMGQNLILNMNDHG-FVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred cEEEEeE-hHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 4566664 899999999999999 6999999999888776553110 0012234445677778888
Q ss_pred HHHHHHHHcCCCccEEEecCc
Q 015844 153 QFVDTFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 153 ~~~~~~~~~~g~id~lv~nAg 173 (399)
.+.+.+.....+=+++|.+.-
T Consensus 82 ~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 82 NFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp HHHHHHHHHCCTTCEEEECSC
T ss_pred HHHHHHHhccccCcEEEecCc
Confidence 888887776655566666543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.95 E-value=0.02 Score=46.11 Aligned_cols=47 Identities=36% Similarity=0.446 Sum_probs=39.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~ 132 (399)
+++||.+||.|+ ||.+++++..|.+.| +|.+..|+.++.+.+.+.+.
T Consensus 15 ~~~~k~vlIlGa-GG~arai~~aL~~~~--~i~I~nR~~~ka~~l~~~~~ 61 (177)
T d1nvta1 15 RVKDKNIVIYGA-GGAARAVAFELAKDN--NIIIANRTVEKAEALAKEIA 61 (177)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHcccc--ceeeehhhhhHHHHHHHHHH
Confidence 478999999986 789999999997665 89999999998888777653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.81 E-value=0.029 Score=44.92 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=36.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~ 130 (399)
.|++.|.|+ |.+|.++|..|+++| +.|.+++|+++..+...+.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G-~~V~~~~r~~~~~~~~~~~ 43 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKG-QSVLAWDIDAQRIKEIQDR 43 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc
Confidence 368889987 899999999999999 5999999998877766543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.77 E-value=0.17 Score=38.69 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=66.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC-CcEEEEeecChHHHHHHHHHhcc----CCCcEEEEEe-cCCCHHHHHHHHHHHHHc
Q 015844 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHL-DLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~G-a~~vv~~~r~~~~~~~~~~~~~~----~~~~~~~~~~-Dvs~~~~v~~~~~~~~~~ 161 (399)
.+.|.|+ |.+|..+|..|+.+| +..+++++.+++.++.....+.. .......... |. +.
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~~----------- 66 (142)
T d1ojua1 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---SL----------- 66 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG---GG-----------
T ss_pred EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH---HH-----------
Confidence 4667786 999999999999887 46799999998776554433321 1222222222 32 11
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
...-|++|..||..... ..+. .+.+..|. .+.+.+.+.+.+.. +.+.++++|-
T Consensus 67 ~~~adiVvitag~~~~~----g~~r---~~l~~~n~----~i~~~i~~~i~~~~-p~aivivvtN 119 (142)
T d1ojua1 67 LKGSEIIVVTAGLARKP----GMTR---LDLAHKNA----GIIKDIAKKIVENA-PESKILVVTN 119 (142)
T ss_dssp GTTCSEEEECCCCCCCS----SCCH---HHHHHHHH----HHHHHHHHHHHTTS-TTCEEEECSS
T ss_pred hccccEEEEeccccCCC----CCch---HHHHHHhh----HHHHHHHHHHHhhC-CCcEEEEecC
Confidence 13689999999974221 2232 33444443 45566666666654 3466666653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.013 Score=45.89 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=32.6
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
+.++||++||+|| |.+|..-++.|++.|| +|.+++..
T Consensus 9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA-~VtVvap~ 45 (150)
T d1kyqa1 9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGC-KLTLVSPD 45 (150)
T ss_dssp ECCTTCEEEEEEE-SHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred eeeCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4689999999999 6799999999999998 88888653
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.034 Score=48.48 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=24.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeec
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACR 119 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r 119 (399)
+++=--.||-.|.++|+.|..+|+ .|+++.+
T Consensus 38 R~ItN~SSGk~G~alA~~~~~~Ga-~V~li~g 68 (290)
T d1p9oa_ 38 RFLDNFSSGRRGATSAEAFLAAGY-GVLFLYR 68 (290)
T ss_dssp EEEEECCCCHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred eEeCCCCchHHHHHHHHHHHHcCC-EEEEEec
Confidence 444455678899999999999997 7777754
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.51 E-value=0.042 Score=45.11 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=37.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~ 128 (399)
+++||+++|-| .|.+|..+|+.|.+.|+ +|++.+.+........
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~ 67 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGA-QLLVADTDTERVAHAV 67 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHH
Confidence 68999999997 78899999999999997 9999998877665543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.38 E-value=0.096 Score=42.81 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=57.8
Q ss_pred ccCCCEEEEEcCCCh-HHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 83 TLRKGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 83 ~l~~k~~lVTG~s~g-IG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+++|+++|=-|++.| +|.+ ++..|+.+|+.++.++..++.+.+.+...+.+..++.+|+.+.
T Consensus 44 dl~g~~vLDlg~GtG~l~i~----a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~------------- 106 (201)
T d1wy7a1 44 DIEGKVVADLGAGTGVLSYG----ALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF------------- 106 (201)
T ss_dssp SSTTCEEEEETCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-------------
T ss_pred CCCCCEEEECcCcchHHHHH----HHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-------------
Confidence 678999998887655 4443 4567877999999999888877777777777888888886432
Q ss_pred CCCccEEEecCcc
Q 015844 162 GRPLDVLVCNAAV 174 (399)
Q Consensus 162 ~g~id~lv~nAg~ 174 (399)
.+++|.||.|.-.
T Consensus 107 ~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 107 NSRVDIVIMNPPF 119 (201)
T ss_dssp CCCCSEEEECCCC
T ss_pred CCcCcEEEEcCcc
Confidence 3589999998764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.064 Score=45.36 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.+++++|+|.| .||+|..++..|+..|..++.+++.+
T Consensus 27 kL~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 57888999999 58999999999999999899998875
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.061 Score=43.73 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=36.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
|++.|.|+ |-+|..+|..++..| +.|++.+++++.++...+.+
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~a~~~i 47 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTEDILAKSKKGI 47 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECChHHHHHHHhhH
Confidence 67888888 789999999999999 59999999987766555443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.04 E-value=0.065 Score=43.57 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=62.5
Q ss_pred CCEEE-EEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 86 KGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 86 ~k~~l-VTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+.++| +|-|+||...++.+.+ ..| +|+.++++++.++.+.+.+...+.++.+++.+.++...+ +... ....
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~-~~~--~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~---~~~~--~~~~ 95 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHC-PGC--RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL---LKTL--GIEK 95 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHC-TTC--EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH---HHHT--TCSC
T ss_pred CCEEEEecCCCcHHHHHHHhcC-CCC--eEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH---HHHc--CCCC
Confidence 44444 6888899999988876 333 899999999988888888877778899999998875443 2221 1358
Q ss_pred ccEEEecCccc
Q 015844 165 LDVLVCNAAVY 175 (399)
Q Consensus 165 id~lv~nAg~~ 175 (399)
+|+++..-|+.
T Consensus 96 vdgIl~DlGvS 106 (192)
T d1m6ya2 96 VDGILMDLGVS 106 (192)
T ss_dssp EEEEEEECSCC
T ss_pred cceeeeccchh
Confidence 99999998874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.78 E-value=0.065 Score=43.72 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=53.7
Q ss_pred cccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 82 ~~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
.++.|++||=.|++.|+ ++..++..|+.+|+.++.++..++.+.+.+ .++.++.+|+.+.
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~~~~~~~D~~~l------------- 104 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC----GGVNFMVADVSEI------------- 104 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TTSEEEECCGGGC-------------
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc----ccccEEEEehhhc-------------
Confidence 36789999999988773 334567788778999999987766555443 3577889998532
Q ss_pred CCCccEEEecCcc
Q 015844 162 GRPLDVLVCNAAV 174 (399)
Q Consensus 162 ~g~id~lv~nAg~ 174 (399)
.+++|+||.|.-.
T Consensus 105 ~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 105 SGKYDTWIMNPPF 117 (197)
T ss_dssp CCCEEEEEECCCC
T ss_pred CCcceEEEeCccc
Confidence 2589999998653
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.67 E-value=0.33 Score=42.64 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=71.8
Q ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC--CcEEEEEecCCCHHHHHHHHHHHHHc
Q 015844 85 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRS 161 (399)
Q Consensus 85 ~~k~~lVTG~s-~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~ 161 (399)
+|+++|=.|+. |+++.+ ++..||.+|+.++.++..++.+.+.+...+ .++.++..|+. +.+......
T Consensus 145 ~g~~VLDl~~g~G~~si~----~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~------~~~~~~~~~ 214 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIH----AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF------EEMEKLQKK 214 (324)
T ss_dssp TTCEEEETTCTTTHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH------HHHHHHHHT
T ss_pred CCCeeecccCcccchhhh----hhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh------hhhHHHHhc
Confidence 47888877654 555554 346787799999999988777766665444 36778877763 233444445
Q ss_pred CCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEec
Q 015844 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (399)
Q Consensus 162 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS 226 (399)
..++|+||.+.-.... +..+... -......+++.+++.++. +|.+|..|.
T Consensus 215 ~~~fD~Vi~DpP~~~~-------~~~~~~~----~~~~y~~l~~~a~~ll~p----GG~lv~~s~ 264 (324)
T d2as0a2 215 GEKFDIVVLDPPAFVQ-------HEKDLKA----GLRAYFNVNFAGLNLVKD----GGILVTCSC 264 (324)
T ss_dssp TCCEEEEEECCCCSCS-------SGGGHHH----HHHHHHHHHHHHHTTEEE----EEEEEEEEC
T ss_pred cCCCCchhcCCccccC-------CHHHHHH----HHHHHHHHHHHHHHHcCC----CcEEEEEeC
Confidence 5689999998765421 2222222 122344566666666554 455555543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.45 E-value=0.14 Score=40.11 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=53.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-------CCcEEEEEecCCCHHHHHHHH---HHH
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------KENYTIMHLDLASLDSVRQFV---DTF 158 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v~~~~---~~~ 158 (399)
+-|. |.|-+|..+|+.|++.| +.|++.+|++++.+.+.+.-... -.+..++..=+.+.++++.++ +.+
T Consensus 3 IgiI-GlG~MG~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 3 VGFI-GLGIMGKPMSKNLLKAG-YSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp EEEE-CCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred EEEE-ehhHHHHHHHHHHHHCC-CeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 4455 46899999999999999 69999999988877765432100 012233444567788888776 234
Q ss_pred HHcCCCccEEEecCc
Q 015844 159 RRSGRPLDVLVCNAA 173 (399)
Q Consensus 159 ~~~~g~id~lv~nAg 173 (399)
.....+=+++|.+..
T Consensus 81 ~~~~~~g~iiid~sT 95 (161)
T d1vpda2 81 IEGAKPGTVLIDMSS 95 (161)
T ss_dssp HHHCCTTCEEEECSC
T ss_pred hhccCCCCEEEECCC
Confidence 443334455555443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.17 E-value=0.052 Score=43.91 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=35.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
|++.|.|+ |-+|..+|..++..| +.|++.+++++.++...+.+
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~~~~~i 47 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINEHGIEQGLAEA 47 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCHHHHhhhhhhh
Confidence 45778887 789999999999999 59999999987766554443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.10 E-value=0.68 Score=36.16 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
..+++|.|+ |--|+.-++.....|| .|.+.+.+.+.++++..... .++. +-.++.+.+++.+. .-
T Consensus 32 pa~V~ViGa-GvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~---~~~~---~~~~~~~~l~~~~~-------~a 96 (168)
T d1pjca1 32 PGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG---SRVE---LLYSNSAEIETAVA-------EA 96 (168)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGSE---EEECCHHHHHHHHH-------TC
T ss_pred CcEEEEECC-ChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc---ccce---eehhhhhhHHHhhc-------cC
Confidence 347888886 5778998999999997 99999999988887766553 2233 23456666665554 58
Q ss_pred cEEEecCcccCC
Q 015844 166 DVLVCNAAVYLP 177 (399)
Q Consensus 166 d~lv~nAg~~~~ 177 (399)
|+||.++-+...
T Consensus 97 DivI~aalipG~ 108 (168)
T d1pjca1 97 DLLIGAVLVPGR 108 (168)
T ss_dssp SEEEECCCCTTS
T ss_pred cEEEEeeecCCc
Confidence 999999987543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.03 E-value=0.042 Score=45.99 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=40.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
+++|++++|-| .|.+|..+|+.|.+.|+ +|+..+.+...........
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~ 82 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEE 82 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhc
Confidence 68899999987 57999999999999997 9999998887777666544
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.12 Score=40.44 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=34.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~ 123 (399)
.+.||+++|.| .|-||+.+|+.|...|+ +|+++..++-+
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~-~V~v~e~dp~~ 59 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGA-RVIITEIDPIN 59 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCC-eeEeeecccch
Confidence 57899999998 46999999999999997 99999998754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.51 E-value=0.096 Score=39.32 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=47.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
|.++|.|. |.+|..+++.|. | +.|+++..+++..+.... ..+.++.+|.++++.++++ ...+.+
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~-~~i~vi~~d~~~~~~~~~------~~~~~i~Gd~~~~~~L~~a------~i~~A~ 64 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--G-SEVFVLAEDENVRKKVLR------SGANFVHGDPTRVSDLEKA------NVRGAR 64 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--G-GGEEEEESCTTHHHHHHH------TTCEEEESCTTSHHHHHHT------TCTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHc--C-CCCEEEEcchHHHHHHHh------cCccccccccCCHHHHHHh------hhhcCc
Confidence 35778875 789999999994 5 467777888776655432 2467888999999876653 123566
Q ss_pred EEEe
Q 015844 167 VLVC 170 (399)
Q Consensus 167 ~lv~ 170 (399)
.+|.
T Consensus 65 ~vi~ 68 (129)
T d2fy8a1 65 AVIV 68 (129)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.46 E-value=0.79 Score=35.58 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=55.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecChHHHHHHHHHhc------------cCCCcEEEEEecCCCHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAG------------MAKENYTIMHLDLASLDSVRQ 153 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~~~~~~~~~~~~------------~~~~~~~~~~~Dvs~~~~v~~ 153 (399)
|+++|.| .|-||..+|+.|.+.|. .+|+.++++++..+.+.+.-. .....+.++. .-.+.+.+
T Consensus 2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila---~p~~~~~~ 77 (171)
T d2g5ca2 2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS---SPVRTFRE 77 (171)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC---SCHHHHHH
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc---CCchhhhh
Confidence 4688887 58999999999999983 378889999877766554311 0012232222 34677888
Q ss_pred HHHHHHHcCCCccEEEecCcc
Q 015844 154 FVDTFRRSGRPLDVLVCNAAV 174 (399)
Q Consensus 154 ~~~~~~~~~g~id~lv~nAg~ 174 (399)
+++++.....+=.+++..+++
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhhccccccccccccccc
Confidence 888887766544455555443
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.031 Score=51.56 Aligned_cols=38 Identities=34% Similarity=0.379 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+.+.+|||.|+ ||||.++++.|+..|..++.+++.+.
T Consensus 34 ~l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 34 LLDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp HHHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred HHhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 356778999998 78999999999999988899998763
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.25 E-value=0.41 Score=37.76 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 94 ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 94 ~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
|.|-+|.++|++|++.| +.|++.+|++++.+.+.+.-
T Consensus 8 GlG~MG~~ma~~L~~~G-~~V~~~dr~~~~~~~l~~~~ 44 (178)
T d1pgja2 8 GLGVMGANLALNIAEKG-FKVAVFNRTYSKSEEFMKAN 44 (178)
T ss_dssp CCSHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHcC
Confidence 67899999999999999 69999999999888876653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.16 E-value=0.57 Score=36.31 Aligned_cols=84 Identities=10% Similarity=0.049 Sum_probs=53.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc-------CCCcEEEEEecCCCHHHHHHHHHH---
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-------AKENYTIMHLDLASLDSVRQFVDT--- 157 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~Dvs~~~~v~~~~~~--- 157 (399)
+|-|. |.|-+|.++|++|+++| +.|.+.+|+..+.+.+...-.. ......++..-+.+.+.++.++..
T Consensus 3 kIg~I-GlG~MG~~iA~~L~~~g-~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~ 80 (162)
T d3cuma2 3 QIAFI-GLGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG 80 (162)
T ss_dssp EEEEE-CCSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred EEEEE-EEHHHHHHHHHHHHHCC-CeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence 45566 56899999999999999 6999999998876665443211 011233445556777777777653
Q ss_pred HHHcCCCccEEEecCc
Q 015844 158 FRRSGRPLDVLVCNAA 173 (399)
Q Consensus 158 ~~~~~g~id~lv~nAg 173 (399)
+.....+=+++|.+..
T Consensus 81 ~~~~l~~g~iiid~st 96 (162)
T d3cuma2 81 LLAHIAPGTLVLECST 96 (162)
T ss_dssp HHHHSCTTCEEEECSC
T ss_pred ccccCCCCCEEEECCC
Confidence 2333333345555443
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.78 E-value=0.29 Score=35.79 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=28.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
|.++|.|| |-||.++|..|.+.|. +|.++.|..
T Consensus 23 ~~v~IiGg-G~ig~E~A~~l~~~G~-~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGG-GYIGIELGTAYANFGT-KVTILEGAG 55 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CeEEEECC-Cccceeeeeeeccccc-EEEEEEecc
Confidence 57888876 7999999999999995 899888764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.69 E-value=0.38 Score=35.50 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
+++++|.|| |-+|.++|..|.+.| .+|.++.+..
T Consensus 30 ~~~vvIIGg-G~iG~E~A~~l~~~g-~~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGG-GVIGLELAATARTAG-VHVSLVETQP 63 (121)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred CCeEEEECc-chhHHHHHHHhhccc-ceEEEEeecc
Confidence 467888876 799999999999999 4999998864
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=91.42 E-value=0.27 Score=39.59 Aligned_cols=38 Identities=21% Similarity=0.076 Sum_probs=32.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~ 122 (399)
.+.|+++.|.|. |.||+.+|+.+...|. +|+..++...
T Consensus 44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~-~v~~~d~~~~ 81 (191)
T d1gdha1 44 KLDNKTLGIYGF-GSIGQALAKRAQGFDM-DIDYFDTHRA 81 (191)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred eecccceEEeec-ccchHHHHHHHHhhcc-cccccccccc
Confidence 678999999985 7999999999999995 8988887543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=91.13 E-value=0.4 Score=35.42 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
++|+++|.|| |.+|.++|..|++.|. +|.++.+..
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~-~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGK-KVTVIDILD 63 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccce-EEEEEEecC
Confidence 3567888865 7999999999999995 899887753
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=91.10 E-value=0.17 Score=39.67 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
++.||+++|.|-+.-+|+-++..|.++|| .|.++.+.
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~ 70 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRF 70 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSS
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhc-cccccccc
Confidence 67899999999999999999999999997 88777554
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.15 Score=40.34 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
++.||+++|.|-|.=+|+-++..|+++|| .|.++....
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t 73 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT 73 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred ccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc
Confidence 57999999999999999999999999997 888776653
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.34 Score=35.94 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=28.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
|.++|.|| |-||.++|..|.+.|. .|.++.|+.
T Consensus 23 k~vvIvGg-G~iG~E~A~~l~~~G~-~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGA-GYIAVEMAGILSALGS-KTSLMIRHD 55 (125)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEEcC-CccHHHHHHHHhcCCc-EEEEEeecc
Confidence 57888886 5899999999999995 999998863
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=90.96 E-value=0.23 Score=38.31 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=35.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
.+.+.|+ |-+|.++++.|.+.|.+.|++.+|++++.+.+.++.
T Consensus 2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~ 44 (152)
T d1yqga2 2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL 44 (152)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT
T ss_pred EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc
Confidence 3566665 899999999999888679999999998887776654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=90.87 E-value=0.94 Score=39.40 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=55.8
Q ss_pred ccCCCEEEEEcCC-ChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s-~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+|++||=.++. ||++.++ +..| .+|+.++.++..++.+.+.+...+ .++.++.+|..+ +.+....
T Consensus 143 ~~~g~rVLDl~~gtG~~s~~~----a~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~------~~~~~~~ 211 (318)
T d1wxxa2 143 RFRGERALDVFSYAGGFALHL----ALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD------LLRRLEK 211 (318)
T ss_dssp GCCEEEEEEETCTTTHHHHHH----HHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHH------HHHHHHH
T ss_pred HhCCCeeeccCCCCcHHHHHH----HhcC-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHH------HhhhhHh
Confidence 3578889866654 5555443 3445 599999999988887777665555 368888887643 2333444
Q ss_pred cCCCccEEEecCccc
Q 015844 161 SGRPLDVLVCNAAVY 175 (399)
Q Consensus 161 ~~g~id~lv~nAg~~ 175 (399)
...+.|.||.+.-..
T Consensus 212 ~~~~fD~Vi~DpP~~ 226 (318)
T d1wxxa2 212 EGERFDLVVLDPPAF 226 (318)
T ss_dssp TTCCEEEEEECCCCS
T ss_pred hhcCCCEEEEcCCcc
Confidence 456899999987654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.84 E-value=0.32 Score=35.97 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=27.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
|.++|.|| |-||.++|..|++.|+ .|.++.+..
T Consensus 24 ~~~vIiG~-G~ig~E~A~~l~~lG~-~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGG-GIIGLEMGSVYSRLGS-KVTVVEFQP 56 (122)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CeEEEECC-CchHHHHHHHHHhhCc-ceeEEEecc
Confidence 57788876 6999999999999995 998888753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=90.76 E-value=1.4 Score=38.12 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=70.8
Q ss_pred CCCEEEEEc-CCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 85 RKGSVIITG-ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 85 ~~k~~lVTG-~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
+|+++|=.. ++||++.+ ++..||..|+.++.+...++.+.+.+... ..++.++..|+- ++++....
T Consensus 144 ~g~~VLdlf~~~G~~sl~----aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~------~~l~~~~~ 213 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVA----AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF------DYFKYARR 213 (317)
T ss_dssp BTCEEEEETCTTTHHHHH----HHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH------HHHHHHHH
T ss_pred CCCceeecCCCCcHHHHH----HHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH------HHHHHHHh
Confidence 578888555 45665544 44578878999999987777666655433 246888888863 34445555
Q ss_pred cCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchhhHHHHHHHHHHHHHhhCCCCCceEEEEeccccc
Q 015844 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (399)
Q Consensus 161 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~g~iV~vSS~~~~ 230 (399)
...+.|+||...-.+... ..+... -......|.+.+++.++. +| +++++|.+..
T Consensus 214 ~~~~fD~Ii~DPP~f~~~-------~~~~~~----~~~~~~~L~~~a~~ll~p----gG-~l~~~scs~~ 267 (317)
T d2b78a2 214 HHLTYDIIIIDPPSFARN-------KKEVFS----VSKDYHKLIRQGLEILSE----NG-LIIASTNAAN 267 (317)
T ss_dssp TTCCEEEEEECCCCC------------CCCC----HHHHHHHHHHHHHHTEEE----EE-EEEEEECCTT
T ss_pred hcCCCCEEEEcChhhccc-------hhHHHH----HHHHHHHHHHHHHHHcCC----CC-EEEEEeCCcc
Confidence 566899999986543221 111111 112334466777776654 34 4555555443
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.72 E-value=0.44 Score=41.36 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=53.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc--cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
.++|++||-.|++.|+ ++..+++.||.+|+.+..++.. ..+.+... ....++.++..|+.+...
T Consensus 33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~~~~~~i~~~~~~~~~l~~---------- 98 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLNKLEDTITLIKGKIEEVHL---------- 98 (311)
T ss_dssp GTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHH-HHHHHHHHHTTCTTTEEEEESCTTTSCC----------
T ss_pred cCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHhCCCccceEEEeeHHHhcC----------
Confidence 4578999999998776 5667788998899999988653 22333222 224578899999876421
Q ss_pred cCCCccEEEecC
Q 015844 161 SGRPLDVLVCNA 172 (399)
Q Consensus 161 ~~g~id~lv~nA 172 (399)
...++|+||..-
T Consensus 99 ~~~~~D~Ivse~ 110 (311)
T d2fyta1 99 PVEKVDVIISEW 110 (311)
T ss_dssp SCSCEEEEEECC
T ss_pred ccccceEEEEee
Confidence 124799998753
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.56 E-value=0.52 Score=34.17 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=51.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
..++.|.|| |-+|+-++....+.| .++++.+.+++.... . ..-.++..|..|.+.+.++.... .+
T Consensus 11 ~~kigIlGg-GQL~rMla~aA~~lG-~~v~v~d~~~~~PA~---~-----va~~~i~~~~~d~~~l~~~~~~~-----~~ 75 (111)
T d1kjqa2 11 ATRVMLLGS-GELGKEVAIECQRLG-VEVIAVDRYADAPAM---H-----VAHRSHVINMLDGDALRRVVELE-----KP 75 (111)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTT-CEEEEEESSTTCGGG---G-----GSSEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHCC-CEEEEEcCCCCCchh---h-----cCCeEEECCCCCHHHHHHHHHhh-----CC
Confidence 347899984 789999999999999 599999887542111 0 11256789999999999888754 57
Q ss_pred cEEE
Q 015844 166 DVLV 169 (399)
Q Consensus 166 d~lv 169 (399)
|++.
T Consensus 76 DviT 79 (111)
T d1kjqa2 76 HYIV 79 (111)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 8774
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.41 E-value=0.38 Score=35.27 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=28.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
|+++|.|| |-||.++|..|++.|. +|.++.|..
T Consensus 23 ~~v~IiGg-G~iG~E~A~~l~~~g~-~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGS-GYIAVELINVIKRLGI-DSYIFARGN 55 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred CEEEEECC-chHHHHHHHHHHhccc-cceeeehhc
Confidence 57888876 7999999999999995 999998863
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.22 E-value=0.3 Score=40.76 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=57.9
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.+++++|=.|++.|. ++..|++.|. +|+.++.++.-++.+.+.....+.++.++..|+.+.+ ..+
T Consensus 36 ~~~~~vLDiGCG~G~---~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 100 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGN---LTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-----------INR 100 (246)
T ss_dssp CCTTEEEEETCTTST---THHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-----------CSC
T ss_pred CCCCeEEEEeCcCCH---HHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc-----------ccc
Confidence 356789999998775 6788899995 9999999988777766666656668889988886532 124
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
++|+|++.-+..
T Consensus 101 ~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 101 KFDLITCCLDST 112 (246)
T ss_dssp CEEEEEECTTGG
T ss_pred cccccceeeeee
Confidence 799998755443
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=90.16 E-value=0.18 Score=40.67 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~ 130 (399)
.+.+.|.|+ |-.|.++|..|++.| +.|.+.+|+++..+.+.+.
T Consensus 7 m~KI~ViGa-G~wGtAlA~~La~~g-~~V~l~~r~~~~~~~i~~~ 49 (189)
T d1n1ea2 7 LNKAVVFGS-GAFGTALAMVLSKKC-REVCVWHMNEEEVRLVNEK 49 (189)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHTTE-EEEEEECSCHHHHHHHHHH
T ss_pred eceEEEECC-CHHHHHHHHHHHHcC-CeEEEEEecHHHHHHHhhc
Confidence 346888886 578999999999999 6999999998777665543
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=90.16 E-value=0.45 Score=34.89 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
+.++|.|| |-||.++|..|++.|. .|.++.+..
T Consensus 23 ~~i~IiG~-G~ig~E~A~~l~~~G~-~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGA-GVIGLELGSVWARLGA-EVTVLEAMD 55 (119)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CeEEEECC-ChHHHHHHHHHHHcCC-ceEEEEeec
Confidence 57888876 7999999999999995 888887753
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=90.07 E-value=0.17 Score=39.32 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=29.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~ 122 (399)
+++|.|+ |.||..++..|++.| +.|.+++|+..
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQG-HEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred EEEEECc-CHHHHHHHHHHHHCC-CceEEEEcCHH
Confidence 5788888 999999999999999 59999999864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=89.90 E-value=0.65 Score=36.85 Aligned_cols=80 Identities=14% Similarity=0.293 Sum_probs=55.1
Q ss_pred ccCCCEEE-EEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC--CCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~l-VTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
..+|+++| +-.|+|++|.+ .+.+||.+|+.+..+....+.+.+.+... ..++.++..|+. ++++...
T Consensus 39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~------~~l~~~~ 108 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN------RALEQFY 108 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH------HHHHHHH
T ss_pred hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch------hhhhhhc
Confidence 35677777 45567778876 45689989999999987776665554322 246888888863 3455555
Q ss_pred HcCCCccEEEecC
Q 015844 160 RSGRPLDVLVCNA 172 (399)
Q Consensus 160 ~~~g~id~lv~nA 172 (399)
....+.|+|+...
T Consensus 109 ~~~~~fDlIflDP 121 (182)
T d2fhpa1 109 EEKLQFDLVLLDP 121 (182)
T ss_dssp HTTCCEEEEEECC
T ss_pred ccCCCcceEEech
Confidence 5556799998665
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.42 Score=34.84 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=27.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
|.++|.|| |-+|.++|..|.+.|. +|.++.|..
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G~-~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLGA-KTHLFEMFD 54 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEECC-ChhhHHHHHHhhcccc-EEEEEeecc
Confidence 46777775 7999999999999995 999988864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.50 E-value=1.9 Score=32.77 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=52.5
Q ss_pred ccCCCEEEEEcC-CChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC--CcEEEEEecCCCHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 83 ~l~~k~~lVTG~-s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.++|+++|=.|+ +|++|.+ .+.+||.+|+.+..+....+.+.+.+...+ .++.+++.|+.+ ++ .
T Consensus 12 ~~~g~~vlDl~~GtG~~~ie----a~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l---~ 78 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIE----AVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AI---D 78 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHH----HHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HH---H
T ss_pred hCCCCeEEEcCCccCHHHHH----HHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------cc---c
Confidence 467888885555 4556654 457898899999999887776666654433 468888888432 22 2
Q ss_pred HcCCCccEEEecC
Q 015844 160 RSGRPLDVLVCNA 172 (399)
Q Consensus 160 ~~~g~id~lv~nA 172 (399)
....+.|+++.+.
T Consensus 79 ~~~~~fDiIf~DP 91 (152)
T d2esra1 79 CLTGRFDLVFLDP 91 (152)
T ss_dssp HBCSCEEEEEECC
T ss_pred ccccccceeEech
Confidence 3345799998764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.25 E-value=1.1 Score=35.47 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHH
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~ 130 (399)
..++|.|+ |-.|+.-++-....|| .|.+.+.+.+.++++...
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL 71 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 46888886 5789999999999998 999999998777766543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.18 E-value=0.4 Score=35.36 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=25.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.++|.|| |-||.++|..|.+.|+ .|.++.|+
T Consensus 22 ~vvIIGg-G~iG~E~A~~l~~lG~-~Vtii~~~ 52 (122)
T d1h6va2 22 KTLVVGA-SYVALECAGFLAGIGL-DVTVMVRS 52 (122)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred eEEEECC-CccHHHHHHHHhhcCC-eEEEEEec
Confidence 5666665 7999999999999996 88887775
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=89.08 E-value=0.47 Score=35.01 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=28.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
+.++|.|| |-||.++|..|.+.|. +|.++.|++
T Consensus 26 ~~~viiG~-G~iglE~A~~~~~~G~-~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGA-GYIGLEMGSVWGRIGS-EVTVVEFAS 58 (123)
T ss_dssp SEEEESCC-SHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CeEEEEcc-chHHHHHHHHHHhcCC-eEEEEEEcc
Confidence 57888876 7999999999999995 999998864
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=88.89 E-value=0.7 Score=33.67 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+|.++|.|| |-||.++|..|++.|. .|.++.|.+
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~-~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGR-RTVMLVRTE 55 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcch-hheEeeccc
Confidence 4678888876 7999999999999995 888888764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=88.80 E-value=1.7 Score=36.74 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCh-HHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC--CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 86 KGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 86 ~k~~lVTG~s~g-IG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
.++++-.|+++| |+.++++ ... .+|+.++.++..++-+.+..+..+ .++.+...|+.+. ..+..
T Consensus 111 ~~~vld~g~GsG~i~~~la~---~~~-~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~ 177 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAK---FSD-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKF 177 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHH---HSS-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGT
T ss_pred ccEEEEeeeeeehhhhhhhh---ccc-ceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------ccccc
Confidence 446665555555 5555442 234 489999999888776666655433 4677778888643 23345
Q ss_pred CCccEEEecCcccC
Q 015844 163 RPLDVLVCNAAVYL 176 (399)
Q Consensus 163 g~id~lv~nAg~~~ 176 (399)
+++|++|.|.-+..
T Consensus 178 ~~fDlIVsNPPYI~ 191 (271)
T d1nv8a_ 178 ASIEMILSNPPYVK 191 (271)
T ss_dssp TTCCEEEECCCCBC
T ss_pred CcccEEEEcccccC
Confidence 78999999988763
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.79 E-value=0.52 Score=34.62 Aligned_cols=34 Identities=38% Similarity=0.541 Sum_probs=28.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
++.++|.|| |-+|.++|..|++.|. +|.++.|.+
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~-~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGY-HVKLIHRGA 65 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccc-eEEEEeccc
Confidence 357888776 7999999999999995 999988763
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.43 E-value=0.3 Score=38.49 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
+++||.++|.|-|.=+|+-+|..|+++|| .|..+..+
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~ 62 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN 62 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCC-EEEEeccc
Confidence 68999999999999999999999999998 88877654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.26 E-value=0.57 Score=35.89 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCEEEEE-cCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 86 KGSVIIT-GASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 86 ~k~~lVT-G~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
++.++|. .|++.||.++|..|++.|+ +|.++.+..
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~ 74 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH 74 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4455554 4668999999999999995 999998864
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.02 E-value=0.97 Score=33.55 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=51.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++.|.|++|-.|+++++.+.+.|. .++. .+++... .+ ...+ +..|+|.++.+.+.++.+.+. ++-
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~~------~~--~~~D---VvIDFS~p~~~~~~l~~~~~~--~~p 67 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGVE------EL--DSPD---VVIDFSSPEALPKTVDLCKKY--RAG 67 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEEE------EC--SCCS---EEEECSCGGGHHHHHHHHHHH--TCE
T ss_pred EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcHH------Hh--ccCC---EEEEecCHHHHHHHHHHHHhc--CCC
Confidence 488999999999999999999995 5543 4443211 01 1223 357999999999999988775 455
Q ss_pred EEEecCcc
Q 015844 167 VLVCNAAV 174 (399)
Q Consensus 167 ~lv~nAg~ 174 (399)
+|+-.-|.
T Consensus 68 ~ViGTTG~ 75 (128)
T d1vm6a3 68 LVLGTTAL 75 (128)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 66655553
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=87.98 E-value=0.73 Score=36.27 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC-------------CCcEEEEEecCCCHHHH
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------------KENYTIMHLDLASLDSV 151 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dvs~~~~v 151 (399)
++++||..|++.| ..+..|+++| +.|+.++.++..++.+.+..+.. +..+.++.+|..+....
T Consensus 20 ~~~rvLd~GCG~G---~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 20 PGARVLVPLCGKS---QDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp TTCEEEETTTCCS---HHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCEEEEecCcCC---HHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 5779999998776 3677999999 59999999988887777665432 33456788888775431
Q ss_pred HHHHHHHHHcCCCccEEEecCc
Q 015844 152 RQFVDTFRRSGRPLDVLVCNAA 173 (399)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~nAg 173 (399)
.. ...|.++....
T Consensus 96 ~~---------~~~D~i~~~~~ 108 (201)
T d1pjza_ 96 DI---------GHCAAFYDRAA 108 (201)
T ss_dssp HH---------HSEEEEEEESC
T ss_pred cc---------cceeEEEEEee
Confidence 11 15777766443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=87.97 E-value=2.9 Score=32.38 Aligned_cols=119 Identities=11% Similarity=0.107 Sum_probs=60.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCC----cEEEEeecChHHHHHHHHHhc----cCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 88 SVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga----~~vv~~~r~~~~~~~~~~~~~----~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
.+.|.||++.-...+...++..-. ..|++.+.++++++...+.+. ..+........ +|. ++.+
T Consensus 5 KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~---~eal---- 75 (167)
T d1u8xx1 5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--TDP---EEAF---- 75 (167)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--SCH---HHHH----
T ss_pred eEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--CCh---hhcc----
Confidence 466777754322223333333211 489999999988764443332 11223222222 122 1222
Q ss_pred HcCCCccEEEecCcccCCCCCCCCCChhhhhHhhhchh----------------hHHHHHHHHHHHHHhhCCCCCceEEE
Q 015844 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH----------------LGHFLLSRLLLDDLKQSDYPSKRLII 223 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~----------------~g~~~l~~~~~~~l~~~~~~~g~iV~ 223 (399)
..-|+||+.+|.... ....-++.+..|+ .-...+++.+.+.+.+.. |++.+++
T Consensus 76 ---~~AD~Vvitag~~~~-------~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~ 144 (167)
T d1u8xx1 76 ---TDVDFVMAHIRVGKY-------AMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLN 144 (167)
T ss_dssp ---SSCSEEEECCCTTHH-------HHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred ---CCCCEEEECCCcCCC-------CceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEE
Confidence 269999999997421 1122222233331 123345566677776665 4677777
Q ss_pred Eec
Q 015844 224 VGS 226 (399)
Q Consensus 224 vSS 226 (399)
+|-
T Consensus 145 ~TN 147 (167)
T d1u8xx1 145 YSN 147 (167)
T ss_dssp CCS
T ss_pred eCC
Confidence 764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.74 E-value=0.63 Score=33.71 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=27.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
++++|.|| |-+|.++|..|.+.|. .|.++.+.+
T Consensus 22 ~~vvIiGg-G~~G~E~A~~l~~~g~-~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGG-GYIGLELGIAYRKLGA-QVSVVEARE 54 (115)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHhhccc-ceEEEeeec
Confidence 56777765 7999999999999995 898888753
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=87.49 E-value=0.97 Score=37.95 Aligned_cols=73 Identities=22% Similarity=0.182 Sum_probs=53.3
Q ss_pred cCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 84 l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
.+|+++|=.|+++|+ ++..+++.|+ +|+.++.++...+.+.+..+..+.+..++..|+.+ .+ ..+
T Consensus 119 ~~g~~VLDiGcGsG~---l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~------~~-----~~~ 183 (254)
T d2nxca1 119 RPGDKVLDLGTGSGV---LAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA------AL-----PFG 183 (254)
T ss_dssp CTTCEEEEETCTTSH---HHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH------HG-----GGC
T ss_pred CccCEEEEcccchhH---HHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc------cc-----ccc
Confidence 578899999998886 3345677896 89999999988887777666666677777776421 11 125
Q ss_pred CccEEEec
Q 015844 164 PLDVLVCN 171 (399)
Q Consensus 164 ~id~lv~n 171 (399)
+.|.|+.|
T Consensus 184 ~fD~V~an 191 (254)
T d2nxca1 184 PFDLLVAN 191 (254)
T ss_dssp CEEEEEEE
T ss_pred ccchhhhc
Confidence 79999876
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=87.36 E-value=1.1 Score=34.19 Aligned_cols=82 Identities=20% Similarity=0.142 Sum_probs=52.7
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC------CCcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
+-+.| .|-+|..+|++|++.| +. ++..|+.++..+..+..... -.+...+...+.+.+.+....+.+....
T Consensus 3 Ig~IG-lG~MG~~ma~~L~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~ 79 (156)
T d2cvza2 3 VAFIG-LGAMGYPMAGHLARRF-PT-LVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL 79 (156)
T ss_dssp EEEEC-CSTTHHHHHHHHHTTS-CE-EEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred EEEEe-HHHHHHHHHHHHHhCC-CE-EEEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence 33444 5899999999999988 34 46778877766666554211 0122334455667788888888777665
Q ss_pred CCccEEEecCc
Q 015844 163 RPLDVLVCNAA 173 (399)
Q Consensus 163 g~id~lv~nAg 173 (399)
.+-.++|.+.-
T Consensus 80 ~~~~~iid~sT 90 (156)
T d2cvza2 80 REGTYWVDATS 90 (156)
T ss_dssp CTTEEEEECSC
T ss_pred ccccccccccc
Confidence 55556665543
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=87.08 E-value=0.73 Score=34.08 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 87 k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
+.++|.|| |-||.++|..|.+.|. +|.++.+.
T Consensus 27 ~~vvIiGg-G~IG~E~A~~~~~~G~-~Vtive~~ 58 (125)
T d1ojta2 27 GKLLIIGG-GIIGLEMGTVYSTLGS-RLDVVEMM 58 (125)
T ss_dssp SEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred CeEEEECC-CHHHHHHHHHhhcCCC-EEEEEEee
Confidence 57888886 7999999999999995 88888775
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.77 E-value=1.3 Score=33.24 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=49.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEE-eecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCcc
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (399)
++.|.|++|-.|+++++...+..-..++. +++... .... ...+.. +..|+|.++.+.+.++.+.+. ++-
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~-~~~~----~~~~~D---vvIDFS~p~~~~~~~~~~~~~--~~~ 70 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP-LSLL----TDGNTE---VVIDFTHPDVVMGNLEFLIDN--GIH 70 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC-THHH----HTTTCS---EEEECCCTTTHHHHHHHHHHT--TCE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-hhhh----ccccCC---EEEEcccHHHHHHHHHHHHhc--CCC
Confidence 47899999999999999887654234443 344321 1111 111223 458999999999999988775 455
Q ss_pred EEEecCc
Q 015844 167 VLVCNAA 173 (399)
Q Consensus 167 ~lv~nAg 173 (399)
.||-.-|
T Consensus 71 ~ViGTTG 77 (135)
T d1yl7a1 71 AVVGTTG 77 (135)
T ss_dssp EEECCCC
T ss_pred EEEeccc
Confidence 6664444
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.25 Score=46.64 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.|.+.+|+|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d 58 (529)
T d1yova1 22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGN 58 (529)
T ss_dssp HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 466778999986 7999999999999998889888764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.24 E-value=0.87 Score=37.19 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
++.+||..|+++|--.++.-.|+ | .+|+.+.++++-.+.+.+.+...+ .++.++..|..+- ....+
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~--g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g----------~~~~~ 144 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV--K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----------FPPKA 144 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----------CGGGC
T ss_pred ccceEEEecCCCChhHHHHHHhh--C-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC----------CcccC
Confidence 46789999988887777766676 4 379999999876666666665444 5789999987531 12236
Q ss_pred CccEEEecCccc
Q 015844 164 PLDVLVCNAAVY 175 (399)
Q Consensus 164 ~id~lv~nAg~~ 175 (399)
+.|.++.++++.
T Consensus 145 pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 145 PYDVIIVTAGAP 156 (215)
T ss_dssp CEEEEEECSBBS
T ss_pred cceeEEeecccc
Confidence 899999888874
|
| >d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=86.18 E-value=5 Score=31.77 Aligned_cols=26 Identities=0% Similarity=-0.331 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHHHHHhhccCCceEEEEee
Q 015844 276 DSKVCNMLTMQEFHRRFHEETGIAFASLY 304 (399)
Q Consensus 276 ~sK~a~~~~~~~la~~~~~~~gi~v~~v~ 304 (399)
...+++.+|+|.++.|+ +++++-+|.
T Consensus 140 p~~A~l~Gl~r~~~~E~---P~l~~~~vD 165 (209)
T d2fr1a2 140 AAHGALWGVGRVIALEN---PAVWGGLVD 165 (209)
T ss_dssp GGGHHHHHHHHHHHHHC---GGGEEEEEE
T ss_pred HhHHhHHHHHHHHHHhC---CCceEEEEE
Confidence 34677899999999997 466665554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.12 E-value=0.4 Score=38.05 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=27.5
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH
Q 015844 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (399)
Q Consensus 88 ~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~ 122 (399)
.+.|.|+ |..|.++|..|++.| +.|.+.+|+.+
T Consensus 2 kI~ViGa-G~~GtalA~~la~~g-~~V~l~~r~~~ 34 (180)
T d1txga2 2 IVSILGA-GAMGSALSVPLVDNG-NEVRIWGTEFD 34 (180)
T ss_dssp EEEEESC-CHHHHHHHHHHHHHC-CEEEEECCGGG
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CEEEEEEeccc
Confidence 4567775 799999999999999 69999998543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.99 E-value=1.2 Score=38.54 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=52.8
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhc--cCCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+|++||-.|++.|+ ++..+++.||.+|+.+..++. ...+.+.+. ....++.++..|+.+.+ .
T Consensus 31 ~~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~----------~ 96 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE----------L 96 (316)
T ss_dssp HHTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC----------C
T ss_pred cCCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc----------c
Confidence 3478999999998875 566778889888999987753 333333332 22456899999987643 1
Q ss_pred cCCCccEEEecCc
Q 015844 161 SGRPLDVLVCNAA 173 (399)
Q Consensus 161 ~~g~id~lv~nAg 173 (399)
...++|+++..-.
T Consensus 97 ~~~~~D~ivs~~~ 109 (316)
T d1oria_ 97 PVEKVDIIISEWM 109 (316)
T ss_dssp SSSCEEEEEECCC
T ss_pred ccceeEEEeeeee
Confidence 2347999987543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=85.95 E-value=0.54 Score=38.79 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=27.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
.|.|+|.|| |-.|..+|..|+++|. .|.++.|+
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 456888886 6789999999999995 99999885
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.70 E-value=2.1 Score=33.57 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC--CcEEEEEecCCCHHHHHHHHHHHHHcC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (399)
++.++|=.|++.| .++..|++.+ .+|+.++.+++.++.+.+.++..+ .++.++++|.. +.....
T Consensus 33 ~g~~VLDiGcGsG---~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~----------~~~~~~ 98 (186)
T d1l3ia_ 33 KNDVAVDVGCGTG---GVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP----------EALCKI 98 (186)
T ss_dssp TTCEEEEESCTTS---HHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH----------HHHTTS
T ss_pred CCCEEEEEECCeE---cccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh----------hccccc
Confidence 4678887887765 2334556667 499999999988888777776554 47889988741 222334
Q ss_pred CCccEEEecC
Q 015844 163 RPLDVLVCNA 172 (399)
Q Consensus 163 g~id~lv~nA 172 (399)
..+|.++.+.
T Consensus 99 ~~~D~v~~~~ 108 (186)
T d1l3ia_ 99 PDIDIAVVGG 108 (186)
T ss_dssp CCEEEEEESC
T ss_pred CCcCEEEEeC
Confidence 5799998764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.62 E-value=0.83 Score=36.28 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~ 123 (399)
.+.+|++.|.| .|.||+++++.+...|+ +|+..++....
T Consensus 41 ~l~~k~vgiiG-~G~IG~~va~~~~~fg~-~v~~~d~~~~~ 79 (184)
T d1ygya1 41 EIFGKTVGVVG-LGRIGQLVAQRIAAFGA-YVVAYDPYVSP 79 (184)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred cccceeeeecc-ccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence 57899999988 58999999999999995 99999886543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.59 E-value=0.36 Score=38.32 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
+|+|+|.|| |-.|...|..|+++|...|.++.|+.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 466777776 68999999999999963487777764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=84.90 E-value=1.1 Score=34.73 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=34.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~ 123 (399)
.+.||+++|.| =|-+|+.+|++|...|+ +|+++..++-.
T Consensus 20 ~laGk~vvV~G-YG~vGrG~A~~~rg~Ga-~V~V~E~DPi~ 58 (163)
T d1v8ba1 20 LISGKIVVICG-YGDVGKGCASSMKGLGA-RVYITEIDPIC 58 (163)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHHTC-EEEEECSCHHH
T ss_pred eecCCEEEEec-ccccchhHHHHHHhCCC-EEEEEecCchh
Confidence 57899999987 47999999999999997 99999999754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.42 E-value=1.1 Score=37.00 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
+++++|=.|++.| .++..|+++|+ +|+.++-++.-++.+.+.....+.++.++.+|+.+.. ..+.
T Consensus 41 ~~~~iLDiGcGtG---~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-----------~~~~ 105 (251)
T d1wzna1 41 EVRRVLDLACGTG---IPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-----------FKNE 105 (251)
T ss_dssp CCCEEEEETCTTC---HHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-----------CCSC
T ss_pred CCCEEEEeCCCCC---ccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhcc-----------cccc
Confidence 4568999998776 34667889996 9999999987777777666666668899999986642 1246
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
.|.|++.-+.
T Consensus 106 fD~I~~~~~~ 115 (251)
T d1wzna1 106 FDAVTMFFST 115 (251)
T ss_dssp EEEEEECSSG
T ss_pred cchHhhhhhh
Confidence 8988875443
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=83.74 E-value=0.58 Score=39.39 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=29.4
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~ 118 (399)
+++|++++|.| .|-+|..+|+.|.+.|+ +|+.++
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~Ga-kvvavs 66 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGA-KAVTLS 66 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCC-eEEEEe
Confidence 57899999998 68999999999999997 666553
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=83.63 E-value=0.9 Score=35.94 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=31.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
....|.++|.|| |--|.+.|..|+++| +.|.++.++.
T Consensus 40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G-~~Vtl~E~~~ 76 (179)
T d1ps9a3 40 AVQKKNLAVVGA-GPAGLAFAINAAARG-HQVTLFDAHS 76 (179)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHTTT-CEEEEEESSS
T ss_pred CCCCcEEEEECc-cHHHHHHHHHHHhhc-cceEEEeccC
Confidence 345678999986 688999999999999 6999998864
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=83.39 E-value=0.67 Score=37.39 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=32.5
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+.+|++.|.|. |.||+.+|+.|...|+ +|+.+++..
T Consensus 42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~-~v~~~d~~~ 78 (199)
T d1dxya1 42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGA-KVIAYDPYP 78 (199)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred cccceeeeeeec-ccccccccccccccce-eeeccCCcc
Confidence 678999999985 7999999999999995 999998863
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=83.05 E-value=0.84 Score=36.72 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~ 122 (399)
.+.||++.|.|- |.||+.+|+.|..-|+ +|+.+++...
T Consensus 40 el~gk~vgIiG~-G~IG~~va~~l~~fg~-~V~~~d~~~~ 77 (197)
T d1j4aa1 40 EVRDQVVGVVGT-GHIGQVFMQIMEGFGA-KVITYDIFRN 77 (197)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred cccCCeEEEecc-cccchhHHHhHhhhcc-cccccCcccc
Confidence 578999999985 7999999999999996 9999887643
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.89 E-value=2.6 Score=34.18 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
.+++||..|++.| ..+..|++.|+ .|+.++-++..++.+.+..
T Consensus 45 ~~~rvLd~GCG~G---~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 45 SGLRVFFPLCGKA---VEMKWFADRGH-SVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CSCEEEETTCTTC---THHHHHHHTTC-EEEEECSCHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCc---HHHHHHHhCCC-cEEEEeCCHHHHHHHHHHh
Confidence 5679999998776 45888999995 9999999988877666553
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.78 E-value=0.71 Score=35.35 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHh
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~ 131 (399)
+.|. |.|-+|.++++.|.+.| +.+++..|+.++.+++.++.
T Consensus 3 Ig~I-G~G~mG~al~~~l~~~~-~~i~v~~r~~~~~~~l~~~~ 43 (152)
T d2ahra2 3 IGII-GVGKMASAIIKGLKQTP-HELIISGSSLERSKEIAEQL 43 (152)
T ss_dssp EEEE-CCSHHHHHHHHHHTTSS-CEEEEECSSHHHHHHHHHHH
T ss_pred EEEE-eccHHHHHHHHHHHhCC-CeEEEEcChHHhHHhhcccc
Confidence 4455 56899999999999999 69999999988888776665
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=82.71 E-value=6.9 Score=33.40 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=52.9
Q ss_pred CCCEEEEEc-CCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccC---CCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 85 RKGSVIITG-ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 85 ~~k~~lVTG-~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
++++||=.. ++|+++.+. +..|| .|+.++.+...++.+.+.+... ..++.++..|+. ++++....
T Consensus 132 ~~~rVLdlf~~tG~~sl~a----a~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~------~~l~~~~~ 200 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVA----AAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM------KFIQREER 200 (309)
T ss_dssp SCCEEEEETCTTCHHHHHH----HHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH------HHHHHHHH
T ss_pred CCCeEEEecCCCcHHHHHH----HhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH------HhHHHHhh
Confidence 467787444 456555543 46798 8999999988777666654322 336788887763 34555555
Q ss_pred cCCCccEEEecCccc
Q 015844 161 SGRPLDVLVCNAAVY 175 (399)
Q Consensus 161 ~~g~id~lv~nAg~~ 175 (399)
...+.|+||.+.-.+
T Consensus 201 ~~~~fD~IilDPP~f 215 (309)
T d2igta1 201 RGSTYDIILTDPPKF 215 (309)
T ss_dssp HTCCBSEEEECCCSE
T ss_pred cCCCCCEEEECCCcc
Confidence 556899999986543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=82.54 E-value=1.9 Score=34.91 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCC-CcEEEEEecCCCHHHHHHHHHHHHHcCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (399)
+|.+||-.|+.+|--.++..++..... +|+.+..+++..+.+.+.+...+ .++.++..|..+.. ...+
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g-~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~----------~~~~ 143 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKG-LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV----------PEFS 143 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC----------GGGC
T ss_pred ccceEEEecCccchhHHHHHHHhCCCC-cEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc----------cccc
Confidence 467899888876655544434443332 89999999887777777665443 35677777754311 1124
Q ss_pred CccEEEecCcc
Q 015844 164 PLDVLVCNAAV 174 (399)
Q Consensus 164 ~id~lv~nAg~ 174 (399)
++|.++.+++.
T Consensus 144 ~fD~I~~~~~~ 154 (213)
T d1dl5a1 144 PYDVIFVTVGV 154 (213)
T ss_dssp CEEEEEECSBB
T ss_pred chhhhhhhccH
Confidence 79999988775
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=82.50 E-value=0.95 Score=33.75 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
+++++|.|| |-+|.++|..|.+.| ..|.++.+..
T Consensus 35 ~k~v~VIGg-G~iG~E~A~~l~~~g-~~Vtvie~~~ 68 (133)
T d1q1ra2 35 DNRLVVIGG-GYIGLEVAATAIKAN-MHVTLLDTAA 68 (133)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhhC-cceeeeeecc
Confidence 567888875 799999999999999 4999988864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=82.48 E-value=0.63 Score=39.16 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
+|+|+|.|| |-=|+..|..|++.| .+|.++.++
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G-~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHG-LNVTVFEAE 33 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTS-CEEEEECSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC-CCEEEEeCC
Confidence 578889986 466899999999999 589998764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.46 E-value=2.1 Score=34.27 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=54.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
+.+||=.|++.|. ++..|++.|+ +|+.++.+...++.+.+.....+..+..+..|..+.. ......
T Consensus 38 ~~~ILDiGcG~G~---~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~----------~~~~~f 103 (226)
T d1ve3a1 38 RGKVLDLACGVGG---FSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS----------FEDKTF 103 (226)
T ss_dssp CCEEEEETCTTSH---HHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC----------SCTTCE
T ss_pred CCEEEEECCCcch---hhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccc----------ccCcCc
Confidence 3578999998776 5678888995 9999999988777766666555567778888877632 112479
Q ss_pred cEEEecCcc
Q 015844 166 DVLVCNAAV 174 (399)
Q Consensus 166 d~lv~nAg~ 174 (399)
|+|+.+..+
T Consensus 104 D~I~~~~~l 112 (226)
T d1ve3a1 104 DYVIFIDSI 112 (226)
T ss_dssp EEEEEESCG
T ss_pred eEEEEecch
Confidence 998887554
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.46 E-value=0.94 Score=35.87 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
.+.||++.|.|. |.||+.+++.+...|+ +|+..+|+.
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~-~v~~~d~~~ 75 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGA-QVRGFSRTP 75 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred cccCceEEEecc-ccccccceeeeecccc-ccccccccc
Confidence 478999999996 5699999999999996 999998874
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=82.44 E-value=0.87 Score=36.52 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~ 122 (399)
.+.||++.|.| .|.||+.+|+.+...|+ +|+..++...
T Consensus 46 eL~gktvgIiG-~G~IG~~va~~l~~fg~-~v~~~d~~~~ 83 (193)
T d1mx3a1 46 RIRGETLGIIG-LGRVGQAVALRAKAFGF-NVLFYDPYLS 83 (193)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred eeeCceEEEec-cccccccceeeeecccc-ceeeccCccc
Confidence 58899999997 48999999999999995 9999887643
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.27 E-value=1.8 Score=37.54 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=52.2
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhcc--CCCcEEEEEecCCCHHHHHHHHHHHHH
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 160 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 160 (399)
..+|++||-.|++.|+ ++..+++.||.+|+.+..++ .++.+.+.... ...++.++..|+.+.. -
T Consensus 36 ~~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~----------~ 101 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH----------L 101 (328)
T ss_dssp HHTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC----------C
T ss_pred cCCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc----------C
Confidence 3578999999998774 45677889988999998875 33333333322 2457889999987642 1
Q ss_pred cCCCccEEEecCc
Q 015844 161 SGRPLDVLVCNAA 173 (399)
Q Consensus 161 ~~g~id~lv~nAg 173 (399)
...++|+++..-.
T Consensus 102 ~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 102 PFPKVDIIISEWM 114 (328)
T ss_dssp SSSCEEEEEECCC
T ss_pred cccceeEEEEEec
Confidence 1247999987543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=81.86 E-value=0.85 Score=38.02 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=29.6
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEee
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~ 118 (399)
+++|++++|-| .|-.|..+|+.|.+.|+ +|+.++
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Ga-kvv~vs 61 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGA-KVIAVS 61 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCC-eEEEee
Confidence 67899999997 78999999999999997 776554
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=81.31 E-value=0.63 Score=39.00 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=26.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCcEEEEeecCh
Q 015844 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (399)
Q Consensus 89 ~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~ 121 (399)
|+|.|| |-.|.++|.+|+++| .+|+++.++.
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G-~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKEN-KNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 677775 688999999999999 5999998864
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=81.17 E-value=7.3 Score=27.73 Aligned_cols=81 Identities=11% Similarity=0.261 Sum_probs=53.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCCc
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (399)
||++||.=-..-+...+...|-+.| +.|+..+.+...+-+..++ ....+.++-.++-+.+.+ ++++++++..+.+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g-~~v~~~a~~~~~al~~~~~---~~~dliilD~~mp~~~G~-e~~~~ir~~~~~~ 75 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAG-YEVAGEATNGREAVEKYKE---LKPDIVTMDITMPEMNGI-DAIKEIMKIDPNA 75 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HCCSEEEEECSCGGGCHH-HHHHHHHHHCTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcC-CceEEEECCHHHHHHHHHh---ccCCEEEEecCCCCCCHH-HHHHHHHHhCCCC
Confidence 6889999999899999999999999 5887666665444333332 234555554444444333 5666676666667
Q ss_pred cEEEec
Q 015844 166 DVLVCN 171 (399)
Q Consensus 166 d~lv~n 171 (399)
-+++..
T Consensus 76 pvi~ls 81 (118)
T d1u0sy_ 76 KIIVCS 81 (118)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 776654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.13 E-value=5.5 Score=29.61 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=55.8
Q ss_pred CCCEEEEEcCC---ChHHHHHHHHHHHcCCcEEEEeecChHHHH--HHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Q 015844 85 RKGSVIITGAS---SGLGLATAKALAETGKWHIIMACRDFLKAE--RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (399)
Q Consensus 85 ~~k~~lVTG~s---~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 159 (399)
+-|++.|.|+| +..|..+.+.|.+.| ++|+.+........ .....+......+..+. =+...+.+.++++++.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~-i~vp~~~~~~~~~e~~ 95 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVD-LFVKPKLTMEYVEQAI 95 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEETTEECBSSGGGCSSCCSEEE-ECSCHHHHHHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCcccccCCCcccccccccCccceEEE-EEeCHHHHHHHHHHHH
Confidence 46899999998 679999999999999 58988876532111 00111111111222211 1356788888999888
Q ss_pred HcCCCccEEEecCccc
Q 015844 160 RSGRPLDVLVCNAAVY 175 (399)
Q Consensus 160 ~~~g~id~lv~nAg~~ 175 (399)
+. ++..++...|..
T Consensus 96 ~~--g~k~v~~~~G~~ 109 (139)
T d2d59a1 96 KK--GAKVVWFQYNTY 109 (139)
T ss_dssp HH--TCSEEEECTTCC
T ss_pred Hh--CCCEEEEecccc
Confidence 76 366777777754
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.97 E-value=1.1 Score=34.32 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=27.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecC
Q 015844 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (399)
Q Consensus 86 ~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~ 120 (399)
++.++|.|| |-.|..+|..+.+.||..|+++.|.
T Consensus 45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr 78 (153)
T d1gtea3 45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRK 78 (153)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeC
Confidence 345666665 6889999999999999888888775
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=80.68 E-value=1 Score=34.61 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC-cEEEEeecCh
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDF 121 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga-~~vv~~~r~~ 121 (399)
.||+++|.|| |-.|.++|..|.+.|. ..|.++.+++
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 3789999997 5789999999999873 2677777653
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.58 E-value=0.71 Score=38.31 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=27.9
Q ss_pred ccCCCEEEEEcCCChHHHHHHHHHHH-cCCcEEEEee
Q 015844 83 TLRKGSVIITGASSGLGLATAKALAE-TGKWHIIMAC 118 (399)
Q Consensus 83 ~l~~k~~lVTG~s~gIG~aia~~l~~-~Ga~~vv~~~ 118 (399)
++++++++|-| .|-+|..+|+.|.+ .|+ +|+.++
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga-~vv~vs 62 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGS-KVVAVS 62 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCC-ceEEee
Confidence 57899999986 78999999999985 597 666554
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=80.57 E-value=2.6 Score=34.42 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCcEEEEeecChHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHcCCC
Q 015844 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (399)
Q Consensus 85 ~~k~~lVTG~s~gIG~aia~~l~~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (399)
++.++|-.|+++|--. ..|++.+ .+|+.+.++++..+.+.+.+.. ..++.++..|.... ....++
T Consensus 70 ~g~~VLdIG~GsGy~t---a~La~l~-~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g----------~~~~~p 134 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYT---ALIAEIV-DKVVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLG----------YEEEKP 134 (224)
T ss_dssp TTCEEEEECCTTSHHH---HHHHHHS-SEEEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGC----------CGGGCC
T ss_pred ccceEEEecCCCCHHH---HHHHHHh-cccccccccHHHHHHHHHHHhc-ccccccccCchhhc----------chhhhh
Confidence 4678999998877433 3466666 4899999998776666555443 35788888887531 011357
Q ss_pred ccEEEecCcc
Q 015844 165 LDVLVCNAAV 174 (399)
Q Consensus 165 id~lv~nAg~ 174 (399)
.|.+|.++++
T Consensus 135 fD~Iiv~~a~ 144 (224)
T d1vbfa_ 135 YDRVVVWATA 144 (224)
T ss_dssp EEEEEESSBB
T ss_pred HHHHHhhcch
Confidence 9999988875
|