BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015847
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GFP|A Chain A, Structure Of The Multidrug Transporter Emrd From
Escherichia Coli
pdb|2GFP|B Chain B, Structure Of The Multidrug Transporter Emrd From
Escherichia Coli
Length = 375
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121
P + M +D + RE + S G +++ ++ +F+G ++DR GR+PVI++G S
Sbjct: 21 PAIADMARDLNV--REGAVQSVMG----AYLLTYGVSQLFYGPISDRVGRRPVILVGM-S 73
Query: 122 VVIFNTLFGLSVN 134
+ + TL ++ +
Sbjct: 74 IFMLATLVAVTTS 86
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSL 343
+L D+ Y W + ++ GG YSTQ + + +T +SLLV QL L
Sbjct: 1259 LNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRL 1309
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSL 343
+L D+ Y W + ++ GG YSTQ + + +T +SLLV QL L
Sbjct: 1259 LNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRL 1309
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSL 343
+L D+ Y W + ++ GG YSTQ + + +T +SLLV QL L
Sbjct: 1163 LNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRL 1213
>pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|B Chain B, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|C Chain C, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
pdb|3G49|D Chain D, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of
11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of
Pf-915275
Length = 277
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 291 YCVFSLHDMAYSEIFSLWANSPKKLGGL----------NYSTQMVGEV------LAITGF 334
Y S+ DM ++E F A + +GGL N T GE+ + +
Sbjct: 65 YIAGSMEDMTFAEEFV--AEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNFH 122
Query: 335 SLLVFQLSLYPFLERILGPI-MVARIAGVLTIPLLTSY 371
S +V ++ P L + G I +V+ +AG +T PL+ Y
Sbjct: 123 SFVVLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPY 160
>pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|B Chain B, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|C Chain C, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
pdb|3DWF|D Chain D, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid
Dehydrogenase Type 1 Mutant F278e
Length = 276
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 291 YCVFSLHDMAYSEIFSLWANSPKKLGGL----------NYSTQMVGEV------LAITGF 334
Y S+ DM ++E F A + +GGL N T GE+ + +
Sbjct: 65 YIAGSMEDMTFAEEFV--AEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNFH 122
Query: 335 SLLVFQLSLYPFLERILGPI-MVARIAGVLTIPLLTSY 371
S +V ++ P L + G I +V+ +AG +T PL+ Y
Sbjct: 123 SFVVLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPY 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,350,278
Number of Sequences: 62578
Number of extensions: 375377
Number of successful extensions: 803
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 9
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)