Query 015847
Match_columns 399
No_of_seqs 392 out of 1500
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 03:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 5.5E-32 1.9E-36 254.4 28.2 307 38-376 23-347 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.3E-32 1.1E-36 256.9 21.9 303 40-374 27-341 (451)
3 2gfp_A EMRD, multidrug resista 100.0 1.6E-29 5.5E-34 232.8 15.6 260 44-353 3-264 (375)
4 4gc0_A D-xylose-proton symport 100.0 2.2E-28 7.5E-33 233.4 22.9 313 47-374 18-362 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.9 6.2E-26 2.1E-30 216.4 22.5 306 41-374 13-374 (491)
6 2cfq_A Lactose permease; trans 99.9 3.6E-23 1.2E-27 193.0 12.6 294 41-373 7-308 (417)
7 2xut_A Proton/peptide symporte 99.9 1.6E-21 5.3E-26 187.5 11.5 171 43-235 14-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 5.6E-15 1.9E-19 138.8 11.1 174 41-236 252-433 (451)
9 2cfq_A Lactose permease; trans 99.5 7.5E-14 2.6E-18 129.9 10.4 141 84-240 261-404 (417)
10 3o7q_A L-fucose-proton symport 99.5 2.3E-13 8E-18 127.3 12.4 145 42-195 259-406 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.4 1.2E-12 4E-17 124.5 9.4 144 46-195 288-447 (491)
12 4gc0_A D-xylose-proton symport 99.3 1.6E-12 5.6E-17 123.4 7.8 183 45-243 281-470 (491)
13 2gfp_A EMRD, multidrug resista 99.0 3.3E-11 1.1E-15 110.2 -0.6 145 42-195 200-351 (375)
14 2xut_A Proton/peptide symporte 98.8 8.8E-09 3E-13 98.5 10.1 112 84-195 337-466 (524)
15 2g9p_A Antimicrobial peptide l 38.8 4.5 0.00015 19.1 -0.5 13 102-114 3-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.5e-32 Score=254.43 Aligned_cols=307 Identities=14% Similarity=0.143 Sum_probs=240.5
Q ss_pred CChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (399)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~ 117 (399)
.+++.+..++...+..++......+.+|.+.+++|.+..+ .+++.+++.++..+++++.|+++||+|||+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~ 96 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence 3445566677778888888889999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---hccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847 118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (399)
Q Consensus 118 ~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l 193 (399)
+.++.+++.+++ +++++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+.++|..++|.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 88899999999999999998888775 99999999999999999999999999999999999999
Q ss_pred c-CCCCCCC----------CcccccccccCCcchhhHHHHHHHHHHHHHHHHhc--ccCCCCCCCCCCccchhhhhhhhh
Q 015847 194 A-QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESA 260 (399)
Q Consensus 194 ~-~~~~~~~----------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~ 260 (399)
. +..+... ...+|+... ..+|+.++.+.++..++..+..++. ||++++.++++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------- 244 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----------- 244 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST-----------
T ss_pred HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc-----------
Confidence 8 4110000 000011000 1115555566665555544444433 3333221111100
Q ss_pred hhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHh-hcCCcccCccccchhhHHHHHHHHHHHHHHH
Q 015847 261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF 339 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 339 (399)
++.....++++++|.++...+..++..........++|.| +++. +|+++.+++...+...++.+++
T Consensus 245 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 245 --------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp --------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence 0111245678889999999988888888888888999999 7765 6999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHHH
Q 015847 340 QLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 376 (399)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (399)
+ ++.+++.||+++|+.+..+.++..++++.+.+.+.
T Consensus 312 ~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 312 R-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp H-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred H-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence 8 48999999999999999888888887776665543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.3e-32 Score=256.88 Aligned_cols=303 Identities=13% Similarity=0.057 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (399)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 119 (399)
++.+...++..+..........+.+|.+.+++ .+..+ .+++.+++.++..++++++|+++||+|||++++++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 34455677778888888889999999999999 99999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847 120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (399)
Q Consensus 120 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~ 194 (399)
++.+++.+++++ +++++.++++|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999998887775 999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccc-ccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCC
Q 015847 195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (399)
Q Consensus 195 ~~~~~~~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (399)
+ ..| ||+.| ++.+++.++. ++..+.+||++++...+++++.....+ ...+ .+++++...
T Consensus 180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~ 240 (451)
T 1pw4_A 180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP--DDYN-EKAEQELTA 240 (451)
T ss_dssp H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CC
T ss_pred H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccc--ccch-hhhhccccc
Confidence 7 555 66665 6666665554 444567788765543222111100000 0000 000011111
Q ss_pred c--ccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847 273 T--PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI 350 (399)
Q Consensus 273 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 350 (399)
. ..++.+++|.++...+..++..........++|.|+.+. +|+++.+.+.+.+..+++.+++.. +.+++.||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~ 314 (451)
T 1pw4_A 241 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDK 314 (451)
T ss_dssp THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1 146678899999999988888888888999999998876 789999999999999999999985 88999999
Q ss_pred h--cchhHHHHHHHHHH-HHHhHHhHH
Q 015847 351 L--GPIMVARIAGVLTI-PLLTSYPYI 374 (399)
Q Consensus 351 ~--~~~~~~~~~~~~~~-~~~~~~~~~ 374 (399)
+ ++|+.+..+..+.. ++++.+.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 315 VFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 9 99888877766655 555555443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=1.6e-29 Score=232.79 Aligned_cols=260 Identities=16% Similarity=0.252 Sum_probs=215.9
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHH
Q 015847 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (399)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 123 (399)
+.++...++.........+.+|.+.+++|.++.+ .+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3456677778888888999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCC
Q 015847 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (399)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~ 202 (399)
++.++.+++++++.+++.|++.|++.+...+. .+++.|++|+++|+++++..+....+|..++|.+++++.+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------- 149 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence 99999999999999999999999999888775 9999999999999999999999999999999999999987
Q ss_pred cccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccccc
Q 015847 203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (399)
Q Consensus 203 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (399)
..||| ..+.+.++..++..+ ..+.+||+++++++++ +...+.++.+++
T Consensus 150 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 198 (375)
T 2gfp_A 150 MWNWR---------ACYLFLLVLCAGVTFSMARWMPETRPVDAPRT----------------------RLLTSYKTLFGN 198 (375)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC----------------------CTTTCSTHHHHH
T ss_pred hccHH---------HHHHHHHHHHHHHHHHHHHHCcccCCCCcccc----------------------cHHHHHHHHhcC
Confidence 44454 444666666555444 4455677654322111 112245677889
Q ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP 353 (399)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (399)
|+++...+..++.......+..++|.|.++. +|+++.+.+.+....+++.+++.. +.+++.||.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~ 264 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9998888888887777777777777666554 788999999999999999998884 78888888877
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=2.2e-28 Score=233.36 Aligned_cols=313 Identities=14% Similarity=0.046 Sum_probs=219.3
Q ss_pred HHHHHHhhccccchhhhHHHHHHHhccCccc--cchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (399)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (399)
.++.++.+++...++..+|.+.++++.+... .......|++.+++.+|..++++++|+++||+|||++++++.+++.+
T Consensus 18 ~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i 97 (491)
T 4gc0_A 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI 97 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456677778888888999998887654322 12234478999999999999999999999999999999999999999
Q ss_pred HHHHHh------------------ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhH
Q 015847 125 FNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII 185 (399)
Q Consensus 125 ~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 185 (399)
+.++++ +++|++.++++|+++|++.|...+. .++++|+.|+++|++..+..+.+..+|..+
T Consensus 98 ~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 98 SGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence 999988 4789999999999999998887775 999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhh--hhhhhh---
Q 015847 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESA--- 260 (399)
Q Consensus 186 ~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~--- 260 (399)
++.++..+.. ..++.... .+.|+.++....+..++.++..+++||+|++...+.+.++... ++....
T Consensus 178 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 178 VYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 9999988876 33333333 4567777788888888888888899999976543333222111 110000
Q ss_pred ---hhhhh--hccccCCcccccccccchhHHHHHHHHHHHhh-hhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHH
Q 015847 261 ---SAEVK--EEEGREATPKKSLLKNWPLMSSIIVYCVFSLH-DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF 334 (399)
Q Consensus 261 ---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 334 (399)
..+.+ .++.+........++.+..........+.... ......+.+..... .+.+...........++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 250 TQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT------LGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------SSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh------cCCCccchhhHHHHHHH
Confidence 00000 00011111122233334443333333333322 22333333333322 45666666667777778
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHH
Q 015847 335 SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI 374 (399)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (399)
...++. ++.+++.||+|||+.+..+.....++++.+...
T Consensus 324 ~~~~~~-~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 324 INLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 888887 488999999999999998888887777666544
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=6.2e-26 Score=216.42 Aligned_cols=306 Identities=13% Similarity=0.122 Sum_probs=203.0
Q ss_pred hHHHHHHHHHHHhhccccchhhhHH-HHHHH-----hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc-cCCch
Q 015847 41 TELFSIWIIVLCTALPISSLFPFLY-FMIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP 113 (399)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~ 113 (399)
+.++.++...+...+......+.++ ++.++ +|.+..+ .+++.+++.++..+++++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 4455566666666666666656665 44455 8999999 9999999999999999999999999 89999
Q ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchh--hhHHHHHHHHHHHHHHhHHHHhh
Q 015847 114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG 190 (399)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~i~ 190 (399)
++..+.++.+++.+++++++|++.++++|++.|++.+...+. .++++|++|+++ |+++++..+.+.++|..++|.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887775 999999999988 77888889999999999999999
Q ss_pred hhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc-ccCCCCCCCCCCc---cchhhhhhhh-------
Q 015847 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDS---CDVSYDALES------- 259 (399)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~---~~~~~~~~~~------- 259 (399)
+.+.+ ..|||+. +.+.++..++..+..... |+..+++.+++++ .++..+..+.
T Consensus 167 ~~l~~-------~~g~~~~---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 230 (491)
T 4aps_A 167 GAAQE-------AAGYHVA---------FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG 230 (491)
T ss_dssp HHHHH-------HSCHHHH---------HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred HHHHh-------hhhHHHH---------HHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence 99987 4455544 466655555544443322 3322211111111 0100000000
Q ss_pred -----------hhhhhh-------------------hccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhh
Q 015847 260 -----------ASAEVK-------------------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA 309 (399)
Q Consensus 260 -----------~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (399)
...+.. ...++......+..+....+...+..++...........++.|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4aps_A 231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA 310 (491)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 000000 00000011111111222334444445555555556666777777
Q ss_pred cCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-----HHHHHHHHHHhHHhHH
Q 015847 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYI 374 (399)
Q Consensus 310 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 374 (399)
.+. .+.+..+.+......++...++.. +.+++.||++||+... .+..+.++++.++...
T Consensus 311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
T 4aps_A 311 AER-----VDSSWFPVSWFQSLNPLFIMLYTP-FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIP 374 (491)
T ss_dssp HHS-----CCCSSSCSGGGTTHHHHHHHHHHH-HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHH-----hccCccCHHHHhccchHHHHHHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 665 455556667777777888888874 7788999999876544 6677777776666554
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=3.6e-23 Score=193.03 Aligned_cols=294 Identities=11% Similarity=0.124 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847 41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (399)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 119 (399)
+.++......++.........+.+|.+. +++|.+..+ .|++.+++.++..++++++|+++||+|||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~ 80 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4555555555556666667778888654 568999999 999999999999999999999999999999999888
Q ss_pred HHHHHHH---HHHhccchHH-HHHHHHHHHhhhccchhhH-HHHHhhhccc--hhhhHHHHHHHHHHHHHHhHHHHhhhh
Q 015847 120 ASVVIFN---TLFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGF 192 (399)
Q Consensus 120 ~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~p~i~~~ 192 (399)
.+.+++. ....+.+... .+...+.+.|++.+...+. .....++.++ ++|+..++.......+|..++|.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~ 160 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 7765432 2122222211 2344555666555543332 4444444443 456777788888889999999999999
Q ss_pred hcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCC
Q 015847 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (399)
Q Consensus 193 l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (399)
+.+ .+||. ++++.++..++..+..+..+|++++..+++++.+. ++++...
T Consensus 161 l~~--------~~~~~---------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 210 (417)
T 2cfq_A 161 MFT--------INNQF---------VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-------------NHSAFSL 210 (417)
T ss_dssp HHH--------HCSHH---------HHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS-------------CCCCCCH
T ss_pred HHH--------hchhH---------HHHHHHHHHHHHHHHHHHcCccccccccccccccc-------------ccccccH
Confidence 875 23443 33444444433333334444332211100000000 0000011
Q ss_pred cccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015847 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (399)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (399)
.+.++.+++|+++...+..+........+..++|.|+.+.... .+.+....+...+...++.+++. +..+++.||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g 287 (417)
T 2cfq_A 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT--GEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIG 287 (417)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 1234577888887766665554445555555677776543111 23445667888888888888887 48899999999
Q ss_pred chhHHHHHHHHHHHHHhHHhH
Q 015847 353 PIMVARIAGVLTIPLLTSYPY 373 (399)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~ 373 (399)
||+.+..+..+.++..+.+.+
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 288 GKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988887777776655543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.85 E-value=1.6e-21 Score=187.50 Aligned_cols=171 Identities=15% Similarity=0.202 Sum_probs=140.3
Q ss_pred HHHHHHHHHHhhccccchhhhHH-HHHHHhc------cCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-CCchh
Q 015847 43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV 114 (399)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~ 114 (399)
++.+.+..++..+......+.++ ++.+++| .+..+ .+++.+++.++..+++++.|+++||+ |||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33445555556666555666666 4567789 99999 99999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHH---HHHHHHHHHhHHHHh
Q 015847 115 IIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPAL 189 (399)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~p~i 189 (399)
+.++.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+. .+.+.++|..++|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999998887775 9999999999999876666 899999999999999
Q ss_pred hhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 015847 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW 235 (399)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
++++.+ ..|| +.++.+.++..++..+....
T Consensus 168 ~~~l~~-------~~g~---------~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 168 MPLLLK-------NFGA---------AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp STHHHH-------TSCH---------HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhc-------cccH---------HHHHHHHHHHHHHHHHHHHH
Confidence 999987 3444 44446666665555444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.58 E-value=5.6e-15 Score=138.79 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHhhccccchhhhHHHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc--CCchhhHH
Q 015847 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM 117 (399)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~l~~ 117 (399)
+.++...+..++............|.+.++ +|.+..+ .+++.+...++..++.++.|++.||+ |||+.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 455556666666666666777888877766 8999988 99999999999999999999999999 99999888
Q ss_pred HHHHHH-HHHHHHhcc--chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHH-HHhHHHHhhhh
Q 015847 118 GTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF 192 (399)
Q Consensus 118 ~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~i~~~ 192 (399)
+..+.. ++.++..+. .+.+.+.+..++.|++.+...+. .+++.|.+|+++|++++|+.+....+ |..++|.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766 677776665 36777888888889887776664 89999999999999999999999999 99999999999
Q ss_pred hcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc
Q 015847 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (399)
Q Consensus 193 l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (399)
+.+ ..++...+.+.+++.++..+..+.+
T Consensus 406 l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 406 TVD----------------FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998 3345555566666666655554444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=7.5e-14 Score=129.91 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhh
Q 015847 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI 162 (399)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~ 162 (399)
.++..+...++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+ ...+++|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888889999999999999999999999888888888888888888888777777877655555 48899999
Q ss_pred ccchhhhHHHHH-HHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCC
Q 015847 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL 240 (399)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~ 240 (399)
+|++.|+++.+. ++....+|+.++|.++|++.+ .+++...+.+.++..++..+. ....||++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999998 488889999999999999987 333444456666666665544 33345433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=2.3e-13 Score=127.26 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHH-HHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847 42 ELFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (399)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 119 (399)
.++...+..++............|.+ .++ +|.+..+ .++..+...++..++.++.|+++||+|||+++..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44444445555555555666777766 555 5999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (399)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~ 195 (399)
++.+++.++..+.++.+.++.. ++.|++.+...+. .++..|.+|++ |+.+.++.. ...+|..++|.+.|++.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 333 LIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999998888888877665544 7888887777775 88889999866 888888776 567999999999999998
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=1.2e-12 Score=124.46 Aligned_cols=144 Identities=10% Similarity=-0.036 Sum_probs=110.3
Q ss_pred HHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhH-----HHH
Q 015847 46 IWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----MGT 119 (399)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~-----~~~ 119 (399)
.....+............++.+.+ .++.+..+ .++..+...++..++.++.|++.||+|||+... .+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL 361 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 333334344444445556665554 46766566 888888999999999999999999999987655 677
Q ss_pred HHHHHHHHHHhccc---------hHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHh
Q 015847 120 ASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL 189 (399)
Q Consensus 120 ~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i 189 (399)
++.+++.++..... +.+.+.+..++.|++.+...+ ..+++.|.+|+++|++++|+.+....+|..++|.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665532 667777888899998888666 49999999999999999999999999999999999
Q ss_pred hhhhcC
Q 015847 190 GGFLAQ 195 (399)
Q Consensus 190 ~~~l~~ 195 (399)
.+.+.+
T Consensus 442 ~~~~~~ 447 (491)
T 4aps_A 442 VTLYNA 447 (491)
T ss_dssp GGGGGG
T ss_pred HHHHhc
Confidence 998875
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.33 E-value=1.6e-12 Score=123.42 Aligned_cols=183 Identities=13% Similarity=0.044 Sum_probs=122.7
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (399)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (399)
......+....+.+.+..+.+.+.++.+.+... .........+...++.++.+++.||+|||+.++.+.....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 344444445555566666777888888877776 66777777888889999999999999999999998888877
Q ss_pred HHHHHhcc-----chHHHHHHHH-HHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847 125 FNTLFGLS-----VNFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (399)
Q Consensus 125 ~~~~~~~~-----~~~~~l~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~ 198 (399)
+.+..+.. ++...+...- +..+++.+.....+.+.+|.+|.+.|++++|+......+|..+++.+...+.+.
T Consensus 355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~-- 432 (491)
T 4gc0_A 355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN-- 432 (491)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH--
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 76655432 2222222222 222233333333489999999999999999999999999999998887776541
Q ss_pred CCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCC
Q 015847 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRH 243 (399)
Q Consensus 199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~ 243 (399)
.|... ..++..++++.++++++. ++.++++||++.+.
T Consensus 433 ------~~~~~--~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 433 ------SWLVA--HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp ------HHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred ------HHHHh--hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 01000 112233345555555554 44568899987653
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.99 E-value=3.3e-11 Score=110.22 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847 42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (399)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 120 (399)
.++...+..++............|.+. +++|.++.+ .+++.+...++..++.++.|++.||+|+| +..+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~ 271 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVI 271 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 344444555555555555566666554 448888888 99999999999999999999999999873 233332
Q ss_pred H-HHHHHH--HHhc--cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847 121 S-VVIFNT--LFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (399)
Q Consensus 121 ~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~ 194 (399)
. ...+.. .... .++.+.+++..++.|++.+...+. .+++.|.+| ++|+++.++.+....+|..++|.+.+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 272 CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 222222 1111 236677777888899988877775 999999998 89999999999999999999999999987
Q ss_pred C
Q 015847 195 Q 195 (399)
Q Consensus 195 ~ 195 (399)
+
T Consensus 351 ~ 351 (375)
T 2gfp_A 351 Q 351 (375)
T ss_dssp H
T ss_pred c
Confidence 6
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.84 E-value=8.8e-09 Score=98.51 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHhhhhcccccc----cccCC----chhhHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHh
Q 015847 84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG 146 (399)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~G~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G 146 (399)
.+++.....++..+..++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 56666666666677777777765 55543 356677888888887777663 36677778889999
Q ss_pred hhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847 147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (399)
Q Consensus 147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~ 195 (399)
++.+...+. .+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998887775 8999999999999999999999999999999999999986
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=38.80 E-value=4.5 Score=19.11 Aligned_cols=13 Identities=31% Similarity=0.905 Sum_probs=10.3
Q ss_pred ccccccccCCchh
Q 015847 102 WGLVADRYGRKPV 114 (399)
Q Consensus 102 ~G~l~dr~Grr~~ 114 (399)
+|.+..++|||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889999864
Done!