Query 015848
Match_columns 399
No_of_seqs 228 out of 1226
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 01:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 1.3E-12 2.8E-17 98.0 6.1 52 210-261 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.3 2.6E-12 5.6E-17 96.8 6.1 56 209-264 3-59 (60)
3 smart00353 HLH helix loop heli 99.3 1.1E-11 2.4E-16 91.7 6.3 51 215-265 1-52 (53)
4 KOG1318 Helix loop helix trans 98.9 9.4E-09 2E-13 105.5 11.6 62 205-266 228-291 (411)
5 KOG1319 bHLHZip transcription 98.5 1.3E-07 2.9E-12 87.8 6.5 66 209-274 61-131 (229)
6 KOG4304 Transcriptional repres 98.2 1.6E-06 3.5E-11 84.5 4.3 59 207-265 29-93 (250)
7 KOG3960 Myogenic helix-loop-he 98.1 5.2E-06 1.1E-10 80.3 6.9 65 209-274 117-182 (284)
8 KOG2483 Upstream transcription 98.1 1E-05 2.2E-10 78.1 7.8 64 209-272 58-122 (232)
9 KOG2588 Predicted DNA-binding 98.0 1.6E-05 3.4E-10 88.5 9.0 63 209-272 275-337 (953)
10 KOG3561 Aryl-hydrocarbon recep 98.0 6.3E-06 1.4E-10 91.0 5.1 53 211-263 21-75 (803)
11 cd04897 ACT_ACR_3 ACT domain-c 97.9 4.4E-05 9.5E-10 61.7 7.0 52 343-394 3-56 (75)
12 cd04895 ACT_ACR_1 ACT domain-c 97.9 5.8E-05 1.3E-09 60.5 7.6 48 343-390 3-50 (72)
13 cd04927 ACT_ACR-like_2 Second 97.8 7.3E-05 1.6E-09 59.8 7.4 48 342-389 1-49 (76)
14 cd04900 ACT_UUR-like_1 ACT dom 97.7 0.00021 4.5E-09 56.2 8.0 47 343-389 3-50 (73)
15 cd04896 ACT_ACR-like_3 ACT dom 97.6 0.00018 3.9E-09 58.1 7.1 48 343-390 2-51 (75)
16 KOG4029 Transcription factor H 97.5 0.00011 2.4E-09 70.3 4.4 62 209-270 108-171 (228)
17 cd04925 ACT_ACR_2 ACT domain-c 97.4 0.00083 1.8E-08 53.2 7.9 46 343-388 2-47 (74)
18 cd04928 ACT_TyrKc Uncharacteri 97.3 0.0011 2.4E-08 52.7 7.1 47 343-389 3-50 (68)
19 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0023 5E-08 48.9 7.7 48 343-390 2-49 (70)
20 KOG0561 bHLH transcription fac 97.1 0.0004 8.6E-09 69.1 3.9 56 211-266 61-116 (373)
21 cd04926 ACT_ACR_4 C-terminal 97.1 0.003 6.5E-08 49.7 7.8 47 343-389 3-49 (72)
22 PLN03217 transcription factor 97.0 0.0016 3.4E-08 53.9 5.4 53 223-275 20-76 (93)
23 KOG4447 Transcription factor T 96.9 0.0011 2.3E-08 60.4 4.3 60 204-263 72-131 (173)
24 cd04873 ACT_UUR-ACR-like ACT d 96.5 0.017 3.6E-07 43.6 7.8 48 343-390 2-49 (70)
25 PF13740 ACT_6: ACT domain; PD 96.5 0.018 3.8E-07 45.8 8.1 50 341-390 2-51 (76)
26 PF01842 ACT: ACT domain; Int 96.3 0.021 4.5E-07 42.5 7.4 37 343-379 2-38 (66)
27 PF13291 ACT_4: ACT domain; PD 96.3 0.028 6E-07 44.5 8.2 50 341-390 6-57 (80)
28 cd04893 ACT_GcvR_1 ACT domains 96.1 0.026 5.7E-07 44.9 7.4 49 342-390 2-50 (77)
29 PRK05007 PII uridylyl-transfer 95.9 0.023 4.9E-07 64.6 8.2 51 340-390 807-857 (884)
30 KOG3910 Helix loop helix trans 95.7 0.032 7E-07 59.1 7.7 56 209-266 525-584 (632)
31 PRK00275 glnD PII uridylyl-tra 95.4 0.051 1.1E-06 61.9 8.7 60 331-390 802-863 (895)
32 cd04875 ACT_F4HF-DF N-terminal 95.2 0.087 1.9E-06 41.1 6.9 48 343-390 1-48 (74)
33 PRK00194 hypothetical protein; 95.2 0.056 1.2E-06 43.7 5.9 50 341-390 3-52 (90)
34 cd04869 ACT_GcvR_2 ACT domains 95.1 0.1 2.2E-06 41.0 7.2 35 344-378 2-36 (81)
35 PRK04374 PII uridylyl-transfer 95.1 0.098 2.1E-06 59.5 9.7 60 331-390 784-845 (869)
36 cd04872 ACT_1ZPV ACT domain pr 95.0 0.055 1.2E-06 43.8 5.6 49 342-390 2-50 (88)
37 PRK03381 PII uridylyl-transfer 95.0 0.074 1.6E-06 59.7 8.3 51 340-390 706-756 (774)
38 cd04886 ACT_ThrD-II-like C-ter 95.0 0.12 2.6E-06 38.6 6.9 46 344-389 1-51 (73)
39 PRK03059 PII uridylyl-transfer 95.0 0.076 1.6E-06 60.2 8.4 48 340-387 785-832 (856)
40 PRK05092 PII uridylyl-transfer 94.9 0.11 2.4E-06 59.3 9.6 51 340-390 842-892 (931)
41 cd04887 ACT_MalLac-Enz ACT_Mal 94.9 0.16 3.5E-06 39.1 7.7 47 344-390 2-49 (74)
42 PRK01759 glnD PII uridylyl-tra 94.7 0.075 1.6E-06 60.2 7.3 51 340-390 782-832 (854)
43 PRK03381 PII uridylyl-transfer 94.6 0.11 2.3E-06 58.4 8.2 51 339-389 597-647 (774)
44 TIGR01693 UTase_glnD [Protein- 94.3 0.15 3.3E-06 57.6 8.7 51 340-390 778-828 (850)
45 TIGR01693 UTase_glnD [Protein- 94.3 0.14 3.1E-06 57.8 8.4 52 339-390 666-718 (850)
46 PRK01759 glnD PII uridylyl-tra 94.3 0.15 3.2E-06 57.9 8.5 61 330-390 664-727 (854)
47 PRK05007 PII uridylyl-transfer 94.0 0.2 4.3E-06 57.1 8.7 61 330-390 688-751 (884)
48 PRK00275 glnD PII uridylyl-tra 94.0 0.15 3.3E-06 58.1 7.9 51 340-390 703-754 (895)
49 PRK03059 PII uridylyl-transfer 94.0 0.17 3.6E-06 57.5 8.1 50 339-388 676-726 (856)
50 cd04876 ACT_RelA-SpoT ACT dom 93.8 0.32 6.9E-06 34.7 6.8 46 344-389 1-47 (71)
51 cd02116 ACT ACT domains are co 93.5 0.38 8.2E-06 32.4 6.5 35 344-378 1-35 (60)
52 cd04870 ACT_PSP_1 CT domains f 93.5 0.28 6E-06 38.6 6.4 47 344-390 2-48 (75)
53 cd04877 ACT_TyrR N-terminal AC 93.4 0.29 6.4E-06 38.3 6.4 37 343-380 2-38 (74)
54 cd04888 ACT_PheB-BS C-terminal 93.1 0.38 8.3E-06 37.0 6.6 48 343-390 2-50 (76)
55 COG2844 GlnD UTP:GlnB (protein 93.1 0.2 4.4E-06 56.2 6.7 60 331-390 779-840 (867)
56 PRK05092 PII uridylyl-transfer 93.0 0.35 7.5E-06 55.4 8.8 61 330-390 719-782 (931)
57 PRK04374 PII uridylyl-transfer 93.0 0.29 6.2E-06 55.8 8.0 50 339-388 688-738 (869)
58 cd04874 ACT_Af1403 N-terminal 92.6 0.7 1.5E-05 34.4 7.2 45 343-387 2-47 (72)
59 cd04881 ACT_HSDH-Hom ACT_HSDH_ 92.5 0.5 1.1E-05 35.7 6.4 48 342-389 1-50 (79)
60 PRK04435 hypothetical protein; 92.4 0.66 1.4E-05 41.8 8.1 54 337-390 65-119 (147)
61 KOG3898 Transcription factor N 92.3 0.15 3.3E-06 50.1 4.0 56 208-263 70-126 (254)
62 KOG3560 Aryl-hydrocarbon recep 92.0 0.093 2E-06 56.3 2.3 43 216-258 31-75 (712)
63 cd04878 ACT_AHAS N-terminal AC 91.8 1.1 2.4E-05 33.1 7.4 47 343-389 2-50 (72)
64 cd04889 ACT_PDH-BS-like C-term 91.1 0.92 2E-05 33.2 6.3 46 344-389 1-47 (56)
65 cd04894 ACT_ACR-like_1 ACT dom 91.1 0.59 1.3E-05 37.0 5.3 45 343-387 2-46 (69)
66 cd04879 ACT_3PGDH-like ACT_3PG 91.0 0.99 2.2E-05 33.2 6.5 44 344-387 2-47 (71)
67 cd04903 ACT_LSD C-terminal ACT 90.5 1.3 2.8E-05 32.8 6.7 44 344-387 2-47 (71)
68 cd04905 ACT_CM-PDT C-terminal 90.3 1.9 4E-05 34.1 7.8 49 343-391 3-52 (80)
69 cd04880 ACT_AAAH-PDT-like ACT 90.1 1.6 3.4E-05 34.0 7.2 47 344-390 2-49 (75)
70 PRK08577 hypothetical protein; 89.1 2.5 5.3E-05 37.2 8.4 51 340-390 55-107 (136)
71 PRK07334 threonine dehydratase 88.1 2 4.3E-05 44.5 8.2 50 341-390 326-380 (403)
72 PRK13011 formyltetrahydrofolat 88.0 1.2 2.6E-05 44.4 6.4 50 341-390 7-56 (286)
73 PRK06027 purU formyltetrahydro 87.3 2.2 4.8E-05 42.5 7.7 41 340-380 5-47 (286)
74 cd04882 ACT_Bt0572_2 C-termina 86.8 1.9 4.1E-05 31.9 5.4 44 344-387 2-47 (65)
75 cd04908 ACT_Bt0572_1 N-termina 86.6 3.4 7.4E-05 31.4 6.9 38 343-380 3-40 (66)
76 cd04909 ACT_PDH-BS C-terminal 86.5 4 8.7E-05 30.9 7.2 35 343-377 3-37 (69)
77 KOG3558 Hypoxia-inducible fact 85.8 0.89 1.9E-05 50.3 4.3 44 215-258 51-96 (768)
78 cd04931 ACT_PAH ACT domain of 85.0 4.6 9.9E-05 33.6 7.3 50 342-391 15-65 (90)
79 cd04883 ACT_AcuB C-terminal AC 84.6 6 0.00013 29.9 7.4 46 343-388 3-50 (72)
80 KOG4395 Transcription factor A 84.2 4.8 0.0001 39.8 8.1 55 210-264 174-229 (285)
81 cd04884 ACT_CBS C-terminal ACT 83.9 5.3 0.00012 30.7 6.9 34 344-377 2-35 (72)
82 cd04904 ACT_AAAH ACT domain of 83.8 4.1 8.8E-05 32.1 6.2 47 344-390 3-50 (74)
83 COG2844 GlnD UTP:GlnB (protein 83.4 2.8 6.1E-05 47.5 6.9 56 333-388 676-732 (867)
84 KOG3559 Transcriptional regula 82.5 1.2 2.6E-05 46.7 3.4 44 216-259 7-52 (598)
85 cd04902 ACT_3PGDH-xct C-termin 81.0 4.3 9.3E-05 30.6 5.3 45 344-388 2-48 (73)
86 cd04901 ACT_3PGDH C-terminal A 79.8 1.5 3.3E-05 33.0 2.3 46 344-389 2-47 (69)
87 PRK13010 purU formyltetrahydro 79.3 3.2 7E-05 41.5 5.2 35 341-375 9-43 (289)
88 cd04929 ACT_TPH ACT domain of 78.5 9.5 0.00021 30.5 6.7 45 346-390 5-50 (74)
89 PRK10872 relA (p)ppGpp synthet 76.5 8.9 0.00019 43.3 8.0 50 341-390 666-717 (743)
90 PF13710 ACT_5: ACT domain; PD 75.5 11 0.00024 29.1 6.1 40 350-389 1-42 (63)
91 PRK11589 gcvR glycine cleavage 74.8 5.9 0.00013 37.4 5.3 47 340-386 7-53 (190)
92 TIGR00119 acolac_sm acetolacta 74.7 14 0.00031 33.8 7.6 47 343-389 3-51 (157)
93 TIGR00691 spoT_relA (p)ppGpp s 74.5 10 0.00023 42.3 7.9 50 341-390 610-660 (683)
94 PRK11092 bifunctional (p)ppGpp 73.9 11 0.00024 42.3 7.9 50 341-390 626-676 (702)
95 PRK11152 ilvM acetolactate syn 73.8 15 0.00032 29.8 6.6 47 342-388 4-52 (76)
96 PRK11895 ilvH acetolactate syn 72.7 17 0.00037 33.5 7.6 47 343-389 4-52 (161)
97 cd04930 ACT_TH ACT domain of t 69.9 17 0.00038 31.5 6.7 48 343-390 43-91 (115)
98 KOG4447 Transcription factor T 68.5 4.6 9.9E-05 37.2 2.8 45 217-261 29-73 (173)
99 cd04885 ACT_ThrD-I Tandem C-te 66.8 17 0.00038 27.8 5.5 32 345-377 2-33 (68)
100 PF02120 Flg_hook: Flagellar h 66.7 19 0.00042 28.4 5.9 49 330-378 26-80 (85)
101 PRK06737 acetolactate synthase 65.6 26 0.00056 28.5 6.4 47 342-388 3-51 (76)
102 PRK13562 acetolactate synthase 63.6 26 0.00057 29.1 6.2 47 343-389 4-52 (84)
103 KOG3582 Mlx interactors and re 62.9 5.4 0.00012 44.5 2.6 66 209-274 650-718 (856)
104 cd04922 ACT_AKi-HSDH-ThrA_2 AC 60.7 44 0.00095 24.5 6.6 36 343-378 3-41 (66)
105 cd04892 ACT_AK-like_2 ACT doma 59.9 37 0.00081 24.0 6.0 34 343-376 2-38 (65)
106 COG3830 ACT domain-containing 58.7 9.1 0.0002 32.3 2.7 50 341-390 3-52 (90)
107 cd04868 ACT_AK-like ACT domain 58.4 45 0.00098 23.0 6.1 26 351-376 13-38 (60)
108 cd04906 ACT_ThrD-I_1 First of 58.1 36 0.00078 27.4 6.1 45 342-388 2-49 (85)
109 CHL00100 ilvH acetohydroxyacid 58.0 36 0.00078 31.8 6.8 47 343-389 4-52 (174)
110 cd04919 ACT_AK-Hom3_2 ACT doma 56.9 57 0.0012 24.0 6.7 32 350-381 13-44 (66)
111 COG4492 PheB ACT domain-contai 56.5 20 0.00044 32.5 4.6 51 340-390 71-122 (150)
112 PRK08198 threonine dehydratase 53.4 58 0.0013 33.5 8.2 51 339-389 325-380 (404)
113 PRK11589 gcvR glycine cleavage 52.8 41 0.00089 31.7 6.4 49 342-390 96-148 (190)
114 COG0788 PurU Formyltetrahydrof 50.4 40 0.00086 33.9 6.0 36 341-376 7-42 (287)
115 PRK08178 acetolactate synthase 50.2 64 0.0014 27.5 6.5 48 341-388 8-57 (96)
116 PRK06382 threonine dehydratase 48.7 65 0.0014 33.4 7.7 51 339-389 328-383 (406)
117 cd04916 ACT_AKiii-YclM-BS_2 AC 48.5 88 0.0019 22.8 6.5 33 344-376 4-39 (66)
118 cd04890 ACT_AK-like_1 ACT doma 47.6 79 0.0017 23.2 6.1 34 350-385 12-45 (62)
119 cd04937 ACT_AKi-DapG-BS_2 ACT 45.7 1E+02 0.0022 23.1 6.5 21 350-370 13-33 (64)
120 TIGR01127 ilvA_1Cterm threonin 45.4 93 0.002 31.7 8.1 52 338-389 302-358 (380)
121 PRK00227 glnD PII uridylyl-tra 45.3 49 0.0011 37.3 6.5 46 343-389 548-594 (693)
122 cd04924 ACT_AK-Arch_2 ACT doma 44.0 1.2E+02 0.0026 22.0 6.6 33 344-376 4-39 (66)
123 COG2061 ACT-domain-containing 42.9 74 0.0016 29.6 6.1 49 342-390 6-57 (170)
124 COG4747 ACT domain-containing 41.7 83 0.0018 28.2 6.0 38 343-380 5-42 (142)
125 COG0317 SpoT Guanosine polypho 41.4 69 0.0015 36.2 6.9 50 341-390 627-677 (701)
126 PRK11899 prephenate dehydratas 40.9 1.1E+02 0.0025 30.5 7.7 49 342-390 195-244 (279)
127 PF05088 Bac_GDH: Bacterial NA 40.9 78 0.0017 38.9 7.6 51 340-390 488-543 (1528)
128 COG0016 PheS Phenylalanyl-tRNA 39.9 12 0.00025 38.6 0.6 13 67-79 253-265 (335)
129 PF02344 Myc-LZ: Myc leucine z 38.1 34 0.00073 23.6 2.4 18 217-234 12-29 (32)
130 cd04921 ACT_AKi-HSDH-ThrA-like 37.8 1.3E+02 0.0029 23.0 6.3 26 350-375 13-38 (80)
131 cd04913 ACT_AKii-LysC-BS-like_ 36.6 1.3E+02 0.0028 22.1 5.8 26 349-374 10-35 (75)
132 COG3978 Acetolactate synthase 36.0 1E+02 0.0023 25.7 5.4 47 342-388 4-52 (86)
133 cd04912 ACT_AKiii-LysC-EC-like 35.4 1.7E+02 0.0036 22.8 6.5 25 349-373 12-36 (75)
134 cd04932 ACT_AKiii-LysC-EC_1 AC 33.6 2E+02 0.0042 22.8 6.6 26 349-374 12-37 (75)
135 cd04918 ACT_AK1-AT_2 ACT domai 33.6 1.2E+02 0.0026 22.9 5.3 34 350-383 12-45 (65)
136 PRK08526 threonine dehydratase 31.9 1.9E+02 0.0042 30.2 8.1 39 339-377 324-362 (403)
137 PF13840 ACT_7: ACT domain ; P 31.7 64 0.0014 24.7 3.4 32 342-373 7-42 (65)
138 TIGR01268 Phe4hydrox_tetr phen 31.6 1.4E+02 0.003 32.0 6.9 49 342-390 17-66 (436)
139 PRK00488 pheS phenylalanyl-tRN 30.7 21 0.00045 36.8 0.7 12 67-78 246-257 (339)
140 PRK11898 prephenate dehydratas 30.4 1.7E+02 0.0036 29.2 7.0 50 342-391 197-248 (283)
141 cd04934 ACT_AK-Hom3_1 CT domai 29.2 2.8E+02 0.006 21.8 6.8 31 344-374 4-37 (73)
142 cd04933 ACT_AK1-AT_1 ACT domai 29.2 2.9E+02 0.0063 22.2 7.0 32 343-374 3-37 (78)
143 PRK00227 glnD PII uridylyl-tra 28.5 46 0.001 37.5 3.0 43 342-388 632-674 (693)
144 PF14689 SPOB_a: Sensor_kinase 28.1 1.5E+02 0.0032 22.7 4.9 41 218-267 16-56 (62)
145 PRK06291 aspartate kinase; Pro 27.5 2.4E+02 0.0052 29.9 8.0 46 337-382 317-365 (465)
146 cd04891 ACT_AK-LysC-DapG-like_ 26.5 1.9E+02 0.0041 20.1 5.0 39 349-387 9-48 (61)
147 TIGR01270 Trp_5_monoox tryptop 25.6 1.7E+02 0.0038 31.5 6.4 49 342-390 32-82 (464)
148 KOG3584 cAMP response element 24.9 87 0.0019 31.9 3.8 20 254-273 311-330 (348)
149 TIGR00656 asp_kin_monofn aspar 24.9 2.7E+02 0.006 28.5 7.7 41 335-375 254-297 (401)
150 cd04923 ACT_AK-LysC-DapG-like_ 24.6 2.6E+02 0.0057 19.8 6.5 25 350-374 12-36 (63)
151 cd04935 ACT_AKiii-DAPDC_1 ACT 23.2 2.5E+02 0.0055 22.1 5.6 26 349-374 12-37 (75)
152 cd04915 ACT_AK-Ectoine_2 ACT d 21.9 2.1E+02 0.0046 21.8 4.8 30 351-380 14-43 (66)
153 PRK10622 pheA bifunctional cho 21.8 3.3E+02 0.0071 28.5 7.5 46 346-391 302-348 (386)
154 PLN02705 beta-amylase 21.6 7.4E+02 0.016 28.0 10.3 25 211-235 85-109 (681)
155 COG0077 PheA Prephenate dehydr 21.5 3.4E+02 0.0075 27.4 7.3 49 342-390 195-244 (279)
156 PTZ00326 phenylalanyl-tRNA syn 20.3 41 0.00089 36.4 0.6 13 67-79 416-428 (494)
157 cd04936 ACT_AKii-LysC-BS-like_ 20.1 3.3E+02 0.0071 19.3 6.3 25 350-374 12-36 (63)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.36 E-value=1.3e-12 Score=98.00 Aligned_cols=52 Identities=38% Similarity=0.653 Sum_probs=48.4
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCChhhhHHHHHHHHHHHH
Q 015848 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA---YVQRGDQASIIGGAIDFVKELE 261 (399)
Q Consensus 210 ~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~---~~~K~dKasIL~eAI~YIk~Lq 261 (399)
+|..|+..||+||.+||+.|..|+.+||.. ...|++|++||..||+||+.||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478899999999999999999999999995 4578999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=2.6e-12 Score=96.85 Aligned_cols=56 Identities=39% Similarity=0.641 Sum_probs=51.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCChhhhHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-VQRGDQASIIGGAIDFVKELEQLL 264 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~-~~K~dKasIL~eAI~YIk~Lq~~v 264 (399)
..+..|+.+||+||.+||..|..|+++||... ..|+||++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999942 389999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.26 E-value=1.1e-11 Score=91.65 Aligned_cols=51 Identities=39% Similarity=0.594 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCChhhhHHHHHHHHHHHHHHHH
Q 015848 215 IAVERNRRRQMNDHLNTLRSLMPPAY-VQRGDQASIIGGAIDFVKELEQLLQ 265 (399)
Q Consensus 215 ~~~ER~RR~~mn~~~~~LrsLvP~~~-~~K~dKasIL~eAI~YIk~Lq~~v~ 265 (399)
+..||+||.+||+.|..|+++||... ..+.+|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999642 6789999999999999999998875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.90 E-value=9.4e-09 Score=105.52 Aligned_cols=62 Identities=32% Similarity=0.568 Sum_probs=52.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHHHHHHHHHH
Q 015848 205 EEVESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY--VQRGDQASIIGGAIDFVKELEQLLQS 266 (399)
Q Consensus 205 ee~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~--~~K~dKasIL~eAI~YIk~Lq~~v~~ 266 (399)
++...+|.+|+.+|||||.+||+++..|..|||.+. ..|..|..||..+.+||+.|++..++
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999999999999831 12556999999999999999977663
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.55 E-value=1.3e-07 Score=87.76 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=56.1
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-----VQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~-----~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l 274 (399)
-+|..|.-+||+||+.||..+..|+.|||... ..|+.||-||..+|+||.+|..++..-+.+...+
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999731 2377899999999999999998877766665544
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.16 E-value=1.6e-06 Score=84.48 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=50.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCC------CCCCCChhhhHHHHHHHHHHHHHHHH
Q 015848 207 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPA------YVQRGDQASIIGGAIDFVKELEQLLQ 265 (399)
Q Consensus 207 ~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~------~~~K~dKasIL~eAI~YIk~Lq~~v~ 265 (399)
...+++.|-++||+||.+||+.|..|+.|||.. ..+|++||.||.-|++|++.|+....
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 345678888999999999999999999999972 13688999999999999999986543
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.13 E-value=5.2e-06 Score=80.30 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=55.6
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTL-RSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~L-rsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l 274 (399)
++|....+.||+|=+|+|+.|.+| |.-++++ .++.-|+.||..||+||..||.-++++.+....+
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 467778899999999999999999 5556665 5899999999999999999999999887765543
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.08 E-value=1e-05 Score=78.05 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=52.0
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGD-QASIIGGAIDFVKELEQLLQSLEAQKR 272 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~d-KasIL~eAI~YIk~Lq~~v~~Le~~~~ 272 (399)
+.|..|+.-||+||..|++.|..|+.+||.....+.. .++||..|+.||+.|+.+.......++
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 3588999999999999999999999999984222332 588999999999999977666554443
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.02 E-value=1.6e-05 Score=88.46 Aligned_cols=63 Identities=24% Similarity=0.487 Sum_probs=56.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKR 272 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~ 272 (399)
.+|.+||.+||+-|..||+++..|+.+||.. ..|..|..+|..||+||++|+...+.|+....
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGT-EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCcc-HhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 4789999999999999999999999999985 57899999999999999999987777765543
No 10
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.99 E-value=6.3e-06 Score=91.03 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=48.1
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHHHHHHH
Q 015848 211 RMTHIAVERNRRRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVKELEQL 263 (399)
Q Consensus 211 r~~H~~~ER~RR~~mn~~~~~LrsLvP~~--~~~K~dKasIL~eAI~YIk~Lq~~ 263 (399)
|.+|+.+||+||++||..+..|.+|||.. ...|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 66788999999999999999999999984 127999999999999999999874
No 11
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.88 E-value=4.4e-05 Score=61.69 Aligned_cols=52 Identities=17% Similarity=0.452 Sum_probs=47.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee--ccCC
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL--VSIP 394 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe--c~Ls 394 (399)
.|.|.|++|||+|.+|..+|-.+||+|.+|.|+|.++++.-+|.++-. ++|.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 589999999999999999999999999999999999999999998655 4553
No 12
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.88 E-value=5.8e-05 Score=60.50 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=45.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.|+|.+.+|+|+|.+|.++|..+||+|..|.|+|.|+++.-+|.+.-.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~ 50 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ 50 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC
Confidence 689999999999999999999999999999999999999999998654
No 13
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.83 E-value=7.3e-05 Score=59.80 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=44.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEe
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKV 389 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-v~~~Vlytf~vKV 389 (399)
+.|.|.|++++|+|.+|..+|..+||.|+.|.|.+ .++.++.+|.+.-
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d 49 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD 49 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC
Confidence 46899999999999999999999999999999985 8999999999853
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.00021 Score=56.23 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=43.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKV 389 (399)
.|.|.|++++|+|.+|..+|..+||+|+.|.|.+. ++.++-+|.+.-
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~ 50 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD 50 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC
Confidence 58899999999999999999999999999999766 799999999863
No 15
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.65 E-value=0.00018 Score=58.13 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=44.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT--SSETTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnIT--tv~~~Vlytf~vKVe 390 (399)
.|.|.|.+|+|+|.+|.++|..+||+|..|.|+ |.|.++.-+|.+...
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~ 51 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSD 51 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCC
Confidence 589999999999999999999999999999999 999999999999433
No 16
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.48 E-value=0.00011 Score=70.31 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=53.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY--VQRGDQASIIGGAIDFVKELEQLLQSLEAQ 270 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~--~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~ 270 (399)
.++..++..||+|=+.+|..|..||.+||... .+|..|+.+|.-||.||+.|+.-++.-...
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 35677888899999999999999999999854 578899999999999999999777655433
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.00083 Score=53.24 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=43.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLK 388 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vK 388 (399)
.|+|.+++++|+|.+|..+|..+|+.|+.|.+.+.++.++-+|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~ 47 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVR 47 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEE
Confidence 5899999999999999999999999999999999999999999885
No 18
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0011 Score=52.66 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=42.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT-SSETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnIT-tv~~~Vlytf~vKV 389 (399)
.|-|.|++++|+|.+|..+|..+||.|+.|.|. +.+|.++-+|.|.-
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d 50 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG 50 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec
Confidence 478999999999999999999999999999995 56899999998853
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0023 Score=48.89 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=44.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.|.|.|.+++|+|.+|+.+|.++++.|.++.+.+.++.++.+|.+.-.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC
Confidence 578999999999999999999999999999999888888889988765
No 20
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.13 E-value=0.0004 Score=69.11 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=47.7
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 015848 211 RMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQS 266 (399)
Q Consensus 211 r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~ 266 (399)
|.-.|.-||+|=..||..|..||+|+|.--.-|..||.||..+.+||..|+..-.+
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence 33445789999999999999999999985567889999999999999999865443
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.003 Score=49.68 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=42.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKV 389 (399)
.|.|.+++++|+|.+|..+|.++|+.|++|.+.+.++.++.+|.+.-
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~ 49 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD 49 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC
Confidence 57789999999999999999999999999999888888888888753
No 22
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.97 E-value=0.0016 Score=53.90 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCCh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015848 223 RQMNDHLNTLRSLMPPAYV-QRGDQ---ASIIGGAIDFVKELEQLLQSLEAQKRMRM 275 (399)
Q Consensus 223 ~~mn~~~~~LrsLvP~~~~-~K~dK---asIL~eAI~YIk~Lq~~v~~Le~~~~~l~ 275 (399)
++|++++..|+.|+|.... ...+| +-+|.++.+||+.|+..|..|.+....+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998322 22344 45999999999999999999999988764
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.91 E-value=0.0011 Score=60.36 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=51.9
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHH
Q 015848 204 KEEVESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQL 263 (399)
Q Consensus 204 ~ee~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~ 263 (399)
-+|-..+|..|++.||+|-..+|+.|..||.++|.-.+.|..|.--|.-|..||-.|=+-
T Consensus 72 ~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 72 LDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 345557899999999999999999999999999985567788888899999999998643
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.50 E-value=0.017 Score=43.55 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=41.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.|.|.|.+++|+|.+|+.+|.++|+.|.++.+.+.++.....|.+.-.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~ 49 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS 49 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC
Confidence 478999999999999999999999999999998877776677777654
No 25
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.49 E-value=0.018 Score=45.78 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=43.5
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.+.|.+.+++|||++..|..+|.++|.+|+.++.++.++.+...+.+.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 57899999999999999999999999999999999999998888887765
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.35 E-value=0.021 Score=42.55 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=34.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET 379 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~ 379 (399)
.|.|.|++++|+|.+|..+|-++|+.|.++.+.+.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5889999999999999999999999999999988766
No 27
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.28 E-value=0.028 Score=44.48 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~vKVe 390 (399)
.+.|+|.+.+++|+|.+|..+|.+.|+.|.++++... ++.....|.++|.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~ 57 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK 57 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence 3679999999999999999999999999999999874 6788888888876
No 28
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.14 E-value=0.026 Score=44.94 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=43.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
+.|.+.|++++|+..+|-..|.++|..|+.++.+..++..++.+.+.+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~ 50 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS 50 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec
Confidence 6789999999999999999999999999999999988877766666554
No 29
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.90 E-value=0.023 Score=64.56 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=47.7
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
....|.|.|.+|||+|.+|.++|..+||+|.+|.|+|.++++.-+|.|.-.
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~ 857 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA 857 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC
Confidence 457899999999999999999999999999999999999999999998644
No 30
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.71 E-value=0.032 Score=59.05 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=48.0
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC----ChhhhHHHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRG----DQASIIGGAIDFVKELEQLLQS 266 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~----dKasIL~eAI~YIk~Lq~~v~~ 266 (399)
.+|+..++.||-|-+.||+.|..|-.++-- --|. .|.-||..|+.-|-.|++||.+
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCql--HlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQL--HLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHH--hhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999877653 1233 4678999999999999999986
No 31
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.41 E-value=0.051 Score=61.86 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=51.1
Q ss_pred ceEEEEEe--CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 331 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 331 ~eVEV~vi--g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
+.|.+... ++...|.|.+.+++|+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~ 863 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA 863 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC
Confidence 34444433 2457899999999999999999999999999999999999999999999754
No 32
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.19 E-value=0.087 Score=41.14 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=37.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.|.|.|++++|++.+|.+.|-++|+.|++.+..+..+.-.+.+.+.+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~ 48 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFE 48 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEE
Confidence 378999999999999999999999999999988643322344444443
No 33
>PRK00194 hypothetical protein; Validated
Probab=95.15 E-value=0.056 Score=43.74 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=41.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.+.|.|.|+++||++.+|...|-++|+.|++.+..+.++.....+.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 57899999999999999999999999999999988777654444455443
No 34
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.12 E-value=0.1 Score=40.96 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=33.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE 378 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~ 378 (399)
|.|.|++++|++.+|-+.|..+|+.|.+++..+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 78999999999999999999999999999998876
No 35
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.11 E-value=0.098 Score=59.48 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=51.4
Q ss_pred ceEEEEEe--CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 331 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 331 ~eVEV~vi--g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
+.|.+... ++...|.|.+.++||+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~ 845 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE 845 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC
Confidence 34555432 2457899999999999999999999999999999999999999999999644
No 36
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.05 E-value=0.055 Score=43.83 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=41.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
+.|.+.|+++||++.+|.+.|-.+|++|++++..+.++.....+.+.+.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 5789999999999999999999999999999988877765555555443
No 37
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.00 E-value=0.074 Score=59.66 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=47.6
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
+...|.|.|.++||+|.+|..+|..+|++|.+|.|+|.++.++-+|.|.-.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~ 756 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA 756 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC
Confidence 357899999999999999999999999999999999999999999999754
No 38
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.99 E-value=0.12 Score=38.59 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=36.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEe
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-----ETTVHYSFNLKV 389 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-----~~~Vlytf~vKV 389 (399)
+.|.+++++|.|.+|+.+|.+.|+.|.+.+.... .+.....|.+.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~ 51 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET 51 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe
Confidence 4678899999999999999999999998887643 355555555554
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.98 E-value=0.076 Score=60.23 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=45.8
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEE
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNL 387 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~v 387 (399)
+...|.|.|.++||+|.+|..+|..+||+|+.|.|+|.+++++-+|.|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V 832 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI 832 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE
Confidence 457899999999999999999999999999999999999999999998
No 40
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.94 E-value=0.11 Score=59.30 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=47.5
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
+...|.|.|.+++|+|.+|..+|..+|++|..|.|.|.++++.-+|.+.-.
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~ 892 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL 892 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC
Confidence 457899999999999999999999999999999999999999999999654
No 41
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.93 E-value=0.16 Score=39.10 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=40.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
|+|.+.+++|+|.+|+.+|.+.|..|.+.++... ++.....|.+++.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~ 49 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP 49 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC
Confidence 7899999999999999999999999999998765 4666667777765
No 42
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.67 E-value=0.075 Score=60.24 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=47.5
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
....|.|.+.++||+|.+|.++|.++|++|..|-|+|.++++.-+|.+.-.
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~ 832 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ 832 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC
Confidence 347899999999999999999999999999999999999999999998654
No 43
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.58 E-value=0.11 Score=58.39 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=46.9
Q ss_pred CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 015848 339 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKV 389 (399)
Q Consensus 339 g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKV 389 (399)
.+.+.|.|.|.+++|++.+|..+|..+|++|+.|.|.+.+|.++-+|.|.-
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~ 647 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP 647 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC
Confidence 466889999999999999999999999999999999988999999988863
No 44
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.30 E-value=0.15 Score=57.59 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=47.7
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
+...|.|.|.++||+|.+|.++|..+|++|.+|.|+|.++++..+|.+...
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~ 828 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL 828 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC
Confidence 357899999999999999999999999999999999999999999998765
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.26 E-value=0.14 Score=57.78 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=47.5
Q ss_pred CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEee
Q 015848 339 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT-SSETTVHYSFNLKVL 390 (399)
Q Consensus 339 g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnIT-tv~~~Vlytf~vKVe 390 (399)
++...|.|.+.+++|+|.+|..+|..+||+|+.|.|. +.++.++-+|.|.-.
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~ 718 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL 718 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC
Confidence 3457899999999999999999999999999999997 789999999999766
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.26 E-value=0.15 Score=57.93 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=50.5
Q ss_pred CceEEEEE--eCCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEee
Q 015848 330 GAEIEVIV--IHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKVL 390 (399)
Q Consensus 330 ~~eVEV~v--ig~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-v~~~Vlytf~vKVe 390 (399)
.+.|.+.. ..+...|.|.|++++|+|.+|..+|..+||+|+.|.|.+ .+|.++-+|.|.-.
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~ 727 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL 727 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC
Confidence 34455543 235678999999999999999999999999999999965 89999999988533
No 47
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.97 E-value=0.2 Score=57.14 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=49.3
Q ss_pred CceEEEEE--eCCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEee
Q 015848 330 GAEIEVIV--IHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKVL 390 (399)
Q Consensus 330 ~~eVEV~v--ig~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-v~~~Vlytf~vKVe 390 (399)
.+-|.+.. .++...|.|.|++++|+|.+|..+|..+||+|+.|.|.| .+|.++-+|.|.-.
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~ 751 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP 751 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC
Confidence 34444443 235688999999999999999999999999999999865 46699888888544
No 48
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.96 E-value=0.15 Score=58.08 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI-TSSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnI-Ttv~~~Vlytf~vKVe 390 (399)
+...|.|.|.+++|+|.+|+.+|..+||+|+.|.| |+.+|.++-+|.|.-.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~ 754 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD 754 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC
Confidence 56789999999999999999999999999999998 6678899999988543
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.95 E-value=0.17 Score=57.54 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=46.0
Q ss_pred CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEE
Q 015848 339 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI-TSSETTVHYSFNLK 388 (399)
Q Consensus 339 g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnI-Ttv~~~Vlytf~vK 388 (399)
.+...|.|.|++++|+|.+|..+|..+||+|+.|.| ++.+|.++-+|.|.
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~ 726 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVL 726 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEe
Confidence 356889999999999999999999999999999999 56789999999985
No 50
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.80 E-value=0.32 Score=34.70 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=37.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEe
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKV 389 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKV 389 (399)
|+|.|.+++|.+.+|+..|..++++|.+..+...+ +...+.|.+++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 46889999999999999999999999999887654 54555566554
No 51
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.55 E-value=0.38 Score=32.39 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=31.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE 378 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~ 378 (399)
|.|.|..++|.+.+|+.+|...++.|...+.....
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 56889999999999999999999999999986653
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.47 E-value=0.28 Score=38.58 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=40.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
|.|.+.+|||+..+|.++|-++|++|.+++.++.++.+...+.+.+.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p 48 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP 48 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC
Confidence 78999999999999999999999999999988888775555555443
No 53
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.38 E-value=0.29 Score=38.28 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETT 380 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~ 380 (399)
.|+|.|.+++|+|.+|+.++.+.+..+...++.+. +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 48899999999999999999999999999998765 44
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.15 E-value=0.38 Score=36.99 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=38.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
.|.|.+.+++|+|.+|+.+|.+.|+.|...+.... ++.....|.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~ 50 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS 50 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC
Confidence 57899999999999999999999999999987543 4555556666554
No 55
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.2 Score=56.16 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=50.3
Q ss_pred ceEEEEEe--CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 331 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 331 ~eVEV~vi--g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
|.|.+.-. .+...|+|.+.+|+|+|..|-.+|..++|+|.+|.|+|+|.++.-+|.+..-
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~ 840 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA 840 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc
Confidence 45555433 2357899999999999999999999999999999999999999888776543
No 56
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.02 E-value=0.35 Score=55.39 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=50.4
Q ss_pred CceEEEEEe--CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEee
Q 015848 330 GAEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKVL 390 (399)
Q Consensus 330 ~~eVEV~vi--g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-v~~~Vlytf~vKVe 390 (399)
.+.|.+... .+...|.|.|.+++|+|.+|..+|..+|++|+.|.|.+ .++.++-+|.|.-.
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~ 782 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA 782 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC
Confidence 344555443 35688999999999999999999999999999999965 78888888988644
No 57
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.01 E-value=0.29 Score=55.78 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=45.6
Q ss_pred CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEE
Q 015848 339 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLK 388 (399)
Q Consensus 339 g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-v~~~Vlytf~vK 388 (399)
.+...|.|.|.+++|+|.+|..+|..+||+|+.|.|.+ .+|.++-+|.|.
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~ 738 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVL 738 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEe
Confidence 35678999999999999999999999999999999965 789999999985
No 58
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.56 E-value=0.7 Score=34.41 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEE
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNL 387 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~v 387 (399)
.|.|.+.+++|.|.+|+..|.+.++.|...+....+ +.....|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 478899999999999999999999999988876653 443333333
No 59
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.49 E-value=0.5 Score=35.71 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-C-CeEEEEEEEEe
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-E-TTVHYSFNLKV 389 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~-~~Vlytf~vKV 389 (399)
++|+|.+.+++|+|.+|+..|.+.|..+...+.... + +.....|.+++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 478999999999999999999999999999987654 3 55555555543
No 60
>PRK04435 hypothetical protein; Provisional
Probab=92.45 E-value=0.66 Score=41.80 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=45.4
Q ss_pred EeCCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEee
Q 015848 337 VIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKVL 390 (399)
Q Consensus 337 vig~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-v~~~Vlytf~vKVe 390 (399)
..|..+.|.+.+.+++|+|.+|+.+|.+.|+.|+..+... .++....+|.+.+.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs 119 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS 119 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC
Confidence 4567899999999999999999999999999999998754 35666677777665
No 61
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=92.25 E-value=0.15 Score=50.06 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=48.6
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHHHHHHH
Q 015848 208 ESQRMTHIAVERNRRRQMNDHLNTLRSLMPP-AYVQRGDQASIIGGAIDFVKELEQL 263 (399)
Q Consensus 208 es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~-~~~~K~dKasIL~eAI~YIk~Lq~~ 263 (399)
..+|..-+..||+|=-.+|+.|..||.++|. ....|+.|+..|.-|-+||..|++-
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3578888999999999999999999999994 3357889999999999999988743
No 62
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.99 E-value=0.093 Score=56.32 Aligned_cols=43 Identities=21% Similarity=0.463 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHH
Q 015848 216 AVERNRRRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVK 258 (399)
Q Consensus 216 ~~ER~RR~~mn~~~~~LrsLvP~~--~~~K~dKasIL~eAI~YIk 258 (399)
.--|+-|+++|..+..|.+|+|-. .++|.||.|||.-++.|++
T Consensus 31 NPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 31 NPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred CcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 344678999999999999999973 3789999999999999985
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.77 E-value=1.1 Score=33.15 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=38.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~vKV 389 (399)
.|.|.+.+++|+|.+|+..|.+.++.|...+.... ++...+.|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 47788999999999999999999999999988654 455666666654
No 64
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=91.12 E-value=0.92 Score=33.23 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=37.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEe
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKV 389 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKV 389 (399)
|.|...+++|.|.+|+.+|.+.|+.|....+...+ +..+..|.+..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45688999999999999999999999888876554 66666666543
No 65
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.07 E-value=0.59 Score=37.05 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=38.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEE
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNL 387 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~v 387 (399)
.|.|.|+++.|+=.+|.+.+-+.||.|....+++.|.--+..|-|
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wV 46 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWV 46 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEE
Confidence 589999999999999999999999999999999988744444444
No 66
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.00 E-value=0.99 Score=33.19 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=36.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEE
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNL 387 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~--~~Vlytf~v 387 (399)
+.|.+.+++|+|.+|+..|.+.|+.|.+..+...+ +.....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56788999999999999999999999999987653 566666655
No 67
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.50 E-value=1.3 Score=32.78 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=34.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEE
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNL 387 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~v 387 (399)
|.|.+.+++|.|.+|+..|.++|+.|........ ++.....|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 6788999999999999999999999998887652 3444444443
No 68
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=90.26 E-value=1.9 Score=34.14 Aligned_cols=49 Identities=14% Similarity=0.294 Sum_probs=39.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeec
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVLV 391 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVec 391 (399)
.|.+.-++++|.|.+|+..|.++|+.+++...... ++...|.|.+.+++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~ 52 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG 52 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC
Confidence 35556678999999999999999999999987655 35667888888874
No 69
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=90.13 E-value=1.6 Score=33.99 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=37.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEee
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKVL 390 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~-~Vlytf~vKVe 390 (399)
|-+..++++|.|.+|+..+..+|+.+++.......+ ..-|.|.+.++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 345557899999999999999999999997765543 56677777776
No 70
>PRK08577 hypothetical protein; Provisional
Probab=89.15 E-value=2.5 Score=37.22 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=40.4
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~--~~Vlytf~vKVe 390 (399)
+.+.|.|.+.+++|+|.+|+.+|.+++..+.+.+..+.. +.....+.+.+.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~ 107 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS 107 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC
Confidence 368899999999999999999999999999999886653 333334555544
No 71
>PRK07334 threonine dehydratase; Provisional
Probab=88.08 E-value=2 Score=44.46 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=42.9
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-----ETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-----~~~Vlytf~vKVe 390 (399)
.+.|.|.+.+|+|+|.+|+.+|.+.++.|.+.++.+. ++.....|.++|.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~ 380 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR 380 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC
Confidence 4889999999999999999999999999999998754 5666666777764
No 72
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=88.02 E-value=1.2 Score=44.39 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=40.9
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.+.|.|.|++++|+..+|.+.|-++|++|.+++..+..+.-+|.+.+.+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~ 56 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH 56 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe
Confidence 47799999999999999999999999999999987544444555555554
No 73
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=87.28 E-value=2.2 Score=42.51 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=37.6
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCe
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETT 380 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt--v~~~ 380 (399)
..+.|.|.|++|+|+..+|.++|-++|+.|++++.++ .++.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~ 47 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR 47 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe
Confidence 3578999999999999999999999999999999998 7773
No 74
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.80 E-value=1.9 Score=31.87 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=33.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEE
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNL 387 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~--~~Vlytf~v 387 (399)
|.|.-++++|.|.+|+..|.+.|+.|.+....... +...+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 56677899999999999999999999877654433 455555554
No 75
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=86.62 E-value=3.4 Score=31.38 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=32.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETT 380 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~ 380 (399)
.|.|..++++|.|.+|+.+|.+.|+.|...-+...++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 46778899999999999999999999999887655553
No 76
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.54 E-value=4 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=31.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 377 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv 377 (399)
.+.|.+++++|.|.+|+..|.++|+.|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 47889999999999999999999999998876554
No 77
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.85 E-value=0.89 Score=50.29 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHH
Q 015848 215 IAVERNRRRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVK 258 (399)
Q Consensus 215 ~~~ER~RR~~mn~~~~~LrsLvP~~--~~~K~dKasIL~eAI~YIk 258 (399)
.-+-|-||.|=|+-|..|..+||-+ ..+..|||+|+.-||.|+|
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 3678999999999999999999952 3468999999999999986
No 78
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.04 E-value=4.6 Score=33.63 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=40.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeec
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVLV 391 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVec 391 (399)
..|-+..++++|.|.+|+..|...|+.+.+...-.. +...-|.|.+.+++
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 445566688999999999999999999999998654 44566888888874
No 79
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.64 E-value=6 Score=29.93 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=36.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEE
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLK 388 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt--v~~~Vlytf~vK 388 (399)
.|.|..++++|.|.+|+..|.+.|+.|.+..... .++.....|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 5778889999999999999999999998876533 245556666654
No 80
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=84.23 E-value=4.8 Score=39.84 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=45.0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCChhhhHHHHHHHHHHHHHHH
Q 015848 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-VQRGDQASIIGGAIDFVKELEQLL 264 (399)
Q Consensus 210 ~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~-~~K~dKasIL~eAI~YIk~Lq~~v 264 (399)
+|..-+..||+|=..+|..|..||..||... .+|..|-.-|.-|-.||--|-..+
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 4566678999999999999999999999821 356678888999999998776554
No 81
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.94 E-value=5.3 Score=30.72 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=29.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 377 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv 377 (399)
+.|.-+++||.|.+|+..|.+.|..|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4566789999999999999999999998876544
No 82
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=83.80 E-value=4.1 Score=32.10 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=38.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEee
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKVL 390 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKVe 390 (399)
|-+..++++|.|.+|+..+...|+.+.+...-... ...-|.|.+.++
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 34455789999999999999999999999986544 455688888877
No 83
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.38 E-value=2.8 Score=47.48 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=48.7
Q ss_pred EEEEEeCCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEE
Q 015848 333 IEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI-TSSETTVHYSFNLK 388 (399)
Q Consensus 333 VEV~vig~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnI-Ttv~~~Vlytf~vK 388 (399)
+.++...+...|.|.|+++|+++..|+.++...|++|+.|.| ++.+|.++-||.|.
T Consensus 676 ~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 676 ISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred eeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEe
Confidence 344445567889999999999999999999999999999999 67789999998775
No 84
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=82.49 E-value=1.2 Score=46.67 Aligned_cols=44 Identities=32% Similarity=0.401 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHHH
Q 015848 216 AVERNRRRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVKE 259 (399)
Q Consensus 216 ~~ER~RR~~mn~~~~~LrsLvP~~--~~~K~dKasIL~eAI~YIk~ 259 (399)
.+-|.||++-|-.|..|..++|-+ ..+..||++||.-|..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 456899999999999999999962 23569999999999999974
No 85
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=81.01 E-value=4.3 Score=30.61 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=35.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEE
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLK 388 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt--v~~~Vlytf~vK 388 (399)
+-|...+++|.+.+|...|.+.|+.|....+.. .++...+.|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 456789999999999999999999998887644 346666666654
No 86
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=79.79 E-value=1.5 Score=32.95 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=35.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKV 389 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKV 389 (399)
|-+.+.+++|+|.+|+..|.+.|..+...+....++.....|.+.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 4568889999999999999999999977766554465555555543
No 87
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=79.29 E-value=3.2 Score=41.51 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=33.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT 375 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnIT 375 (399)
.+.|.|.|++++|+..+|-..|-++|+.|++++-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 46799999999999999999999999999999986
No 88
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.46 E-value=9.5 Score=30.47 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=37.1
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 346 IHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 346 I~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
+.-++++|.|.+|+..+...|+.+.+...-.. +...-|.|.+.++
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e 50 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE 50 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 33478899999999999999999999998654 4556688888877
No 89
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=76.45 E-value=8.9 Score=43.34 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=43.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~vKVe 390 (399)
.+.|.|.+.+++|+|.+|..+|.+.++.|+++++.+. ++.....|.++|.
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~ 717 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY 717 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC
Confidence 3689999999999999999999999999999999765 4666666777776
No 90
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=75.51 E-value=11 Score=29.07 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEe
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLKV 389 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnITt--v~~~Vlytf~vKV 389 (399)
+++|.|.+|+..+..-|+.|-+.++.. .++...++|.+.-
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~ 42 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG 42 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee
Confidence 478999999999999999999999987 5667777777765
No 91
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=74.77 E-value=5.9 Score=37.38 Aligned_cols=47 Identities=6% Similarity=0.037 Sum_probs=40.7
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEE
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFN 386 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~ 386 (399)
..+.|.+.+++|+|+...|-++|-++|..|+..+.+..++..--.+.
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~l 53 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIML 53 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEE
Confidence 46889999999999999999999999999999999999885433333
No 92
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=74.69 E-value=14 Score=33.82 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=39.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~--~~Vlytf~vKV 389 (399)
.|.|.-++++|.|.+|...|...|+.|.+..+...+ +....+|.+..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~ 51 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG 51 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC
Confidence 577888999999999999999999999999987554 56667777754
No 93
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=74.51 E-value=10 Score=42.31 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=43.1
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
.+.|.|.+.+++|+|.+|+.+|-+.+..|.++++.+. ++.....|.+.|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~ 660 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK 660 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC
Confidence 4689999999999999999999999999999999776 4666666777776
No 94
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=73.88 E-value=11 Score=42.32 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=42.7
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKVe 390 (399)
.+.|.|.+.+++|+|.+|+.+|-+.++.|.++++.+.+ +.....|.++|.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~ 676 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR 676 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC
Confidence 46899999999999999999999999999999987665 455556777776
No 95
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=73.80 E-value=15 Score=29.85 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=38.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEE
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLK 388 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt--v~~~Vlytf~vK 388 (399)
..|.|.-.++||.|.+|+..+...|..|.+.++.. .++....+|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~ 52 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA 52 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC
Confidence 35788889999999999999999999999999976 445555666664
No 96
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=72.66 E-value=17 Score=33.54 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=39.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~vKV 389 (399)
.|.|.-++++|.|.+|...|...|+.|.+..+... .+....+|.+..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~ 52 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG 52 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC
Confidence 57888899999999999999999999999998654 356667777764
No 97
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.90 E-value=17 Score=31.51 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=38.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
.|-+..++++|.|.+||..+...|+.+.+...-.. +...-|.|.+.++
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 34444488999999999999999999999998655 3445588888777
No 98
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=68.47 E-value=4.6 Score=37.25 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHH
Q 015848 217 VERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELE 261 (399)
Q Consensus 217 ~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq 261 (399)
.||.|.+++++.+.-|+.|+|++...++.+.--|.-+-+||..|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 699999999999999999999965555554443555555555443
No 99
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.85 E-value=17 Score=27.78 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.4
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 015848 345 KIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 377 (399)
Q Consensus 345 kI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv 377 (399)
.|.-+.+||.|.+++++|.. |.+|+..+....
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 46668999999999999999 999998887543
No 100
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=66.67 E-value=19 Score=28.41 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=36.6
Q ss_pred CceEEEEEeCCEEEEEEEcCCCC------ChHHHHHHHHHhCCCeEEEEEEEeeC
Q 015848 330 GAEIEVIVIHNHVNLKIHCPRRP------GQLLKAIVALEDLRLTFLHLNITSSE 378 (399)
Q Consensus 330 ~~eVEV~vig~~v~IkI~C~kr~------GlL~kIL~aLEeLgLdVl~AnITtv~ 378 (399)
...|.|...++.+.|.|.+.... ..+..+-++|...|+.|.+++|...+
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~~ 80 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQGS 80 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS-
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEECC
Confidence 45677778899999999998763 45788999999999999999887543
No 101
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=65.58 E-value=26 Score=28.49 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=38.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEE
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLK 388 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~--~~Vlytf~vK 388 (399)
..|.|.-.+++|+|.+|..++...|..|.+.++...+ +....+|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~ 51 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV 51 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE
Confidence 3578888999999999999999999999999987443 5555666654
No 102
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=63.64 E-value=26 Score=29.14 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=39.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt--v~~~Vlytf~vKV 389 (399)
.|.+.-.+++|+|.+|..+|...|..|.+.++.. ..+....+|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~ 52 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI 52 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC
Confidence 5788889999999999999999999999999864 3466667777763
No 103
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=62.88 E-value=5.4 Score=44.47 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=53.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY---VQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~---~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l 274 (399)
++++.|+.+|.+||.+++-.|..|.+++-+.. ..|+.+..-+...+.||..++.....+.++-..+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 57999999999999999999999999987731 2466677778999999998887777666554443
No 104
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=60.66 E-value=44 Score=24.49 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=26.8
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 015848 343 NLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSE 378 (399)
Q Consensus 343 ~IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnITtv~ 378 (399)
.|.|.+. ..+|.+.+|+++|.+.|+.|.-.+.+..+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~ 41 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE 41 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 3455554 46899999999999999999776654433
No 105
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=59.90 E-value=37 Score=24.04 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=26.5
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 343 NLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 343 ~IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
.|.|.+. ..+|.+.+|+++|.+.++.|...+.+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3556544 568899999999999999998776544
No 106
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=58.69 E-value=9.1 Score=32.29 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=42.4
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.+.|.|.-.+|+|+-..|..+|-++|+.|++.+=+..++..-..+.|.+.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 36789999999999999999999999999999888888876655555544
No 107
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=58.37 E-value=45 Score=23.02 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 351 RPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 351 r~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
.+|.+.+++++|.+.++.|.-.+.+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67999999999999999987766543
No 108
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.06 E-value=36 Score=27.36 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe---eCCeEEEEEEEE
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS---SETTVHYSFNLK 388 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt---v~~~Vlytf~vK 388 (399)
.++.|.=+++||.|.+++++|- +..|....... ..+.++..|.++
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~ 49 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA 49 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC
Confidence 4678888999999999999998 66666555533 234455555543
No 109
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=58.01 E-value=36 Score=31.80 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=38.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt--v~~~Vlytf~vKV 389 (399)
.|.|.-.++||+|.+|...|-..|+.|.+.++.. ..+....+|.+.-
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~ 52 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG 52 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC
Confidence 5888899999999999999999999999999965 3444455565543
No 110
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.86 E-value=57 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=24.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeE
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNITSSETTV 381 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~V 381 (399)
.++|.+.+|+++|.+.|+.|.-.+.+..+..+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~i 44 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEINI 44 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccceE
Confidence 46899999999999999999766654433333
No 111
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=56.45 E-value=20 Score=32.53 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=43.3
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT-SSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnIT-tv~~~Vlytf~vKVe 390 (399)
..+.+.+.-.+|-|.|+++++++-..++.|++.+=+ ..+|+.-.|+.....
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s 122 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS 122 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch
Confidence 357788889999999999999999999999999875 578887777776655
No 112
>PRK08198 threonine dehydratase; Provisional
Probab=53.40 E-value=58 Score=33.54 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=39.7
Q ss_pred CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEe
Q 015848 339 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-----ETTVHYSFNLKV 389 (399)
Q Consensus 339 g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-----~~~Vlytf~vKV 389 (399)
+..+.+.|.=+++||.|.+++..|-+.|..|+..+..-. .+.+..++.+++
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~ 380 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET 380 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe
Confidence 456788899999999999999999999999998887532 344555555554
No 113
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=52.84 E-value=41 Score=31.74 Aligned_cols=49 Identities=6% Similarity=0.151 Sum_probs=40.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC----CeEEEEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE----TTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~----~~Vlytf~vKVe 390 (399)
+.|.|.-.++||++.+|-++|-++|+.|.+++..+.+ +.-+|...+.+.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~ 148 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAH 148 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEE
Confidence 6789999999999999999999999999999986654 445666555555
No 114
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=50.44 E-value=40 Score=33.95 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=33.4
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
.+.+.|.|++++|+...|-..|-+.|..|++++-.+
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 477999999999999999999999999999999764
No 115
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=50.19 E-value=64 Score=27.52 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=38.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEE
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLK 388 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~vK 388 (399)
...|.|.-.+++|+|.+|...+-.-|..|.+.++... .+....+|.+.
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~ 57 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN 57 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc
Confidence 4568899999999999999999999999999888544 34455666654
No 116
>PRK06382 threonine dehydratase; Provisional
Probab=48.68 E-value=65 Score=33.44 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=38.3
Q ss_pred CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE----ee-CCeEEEEEEEEe
Q 015848 339 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT----SS-ETTVHYSFNLKV 389 (399)
Q Consensus 339 g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnIT----tv-~~~Vlytf~vKV 389 (399)
+..+.|.|.-+++||.|.+|++.|.+.+.+|++.... .. .+....+|.++.
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet 383 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV 383 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe
Confidence 3456788888999999999999999999999987764 22 344455555544
No 117
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.52 E-value=88 Score=22.82 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=25.4
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 344 LKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 344 IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
|.|.+. +.+|.+.+|+.+|.+.|+.|.-.+.+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 444443 468999999999999999997766543
No 118
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=47.58 E-value=79 Score=23.21 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEE
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSF 385 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf 385 (399)
..+|.+.+|+++|++.|+.|..... ....+.+++
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v 45 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYL 45 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEE
Confidence 4688999999999999999998843 334444444
No 119
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=45.75 E-value=1e+02 Score=23.10 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHHHhCCCeEE
Q 015848 350 RRPGQLLKAIVALEDLRLTFL 370 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl 370 (399)
..+|++.+++.+|.+.|+.|.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 579999999999999999996
No 120
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=45.40 E-value=93 Score=31.74 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=39.1
Q ss_pred eCCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-----eCCeEEEEEEEEe
Q 015848 338 IHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-----SETTVHYSFNLKV 389 (399)
Q Consensus 338 ig~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-----v~~~Vlytf~vKV 389 (399)
.|..+.|.|.=+++||.|.+|++.+.+.|..|++..... ..+.+...|.+++
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet 358 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET 358 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe
Confidence 345678899999999999999999999999999886652 1244444555544
No 121
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=45.30 E-value=49 Score=37.29 Aligned_cols=46 Identities=9% Similarity=0.223 Sum_probs=38.7
Q ss_pred EEEE-EcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 015848 343 NLKI-HCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKV 389 (399)
Q Consensus 343 ~IkI-~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKV 389 (399)
.+.| .|++++|+|.++..+|--+|+.|..|++.+ +|..+..|.|.-
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~ 594 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA 594 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec
Confidence 4444 459999999999999999999999999999 777777777653
No 122
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.02 E-value=1.2e+02 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=25.1
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 344 LKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 344 IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
|.|.+. ..+|.+.+++++|.+.|+.|.-.+.+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 4 VAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 444444 467999999999999999997666543
No 123
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=42.89 E-value=74 Score=29.64 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=38.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS---ETTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv---~~~Vlytf~vKVe 390 (399)
+.+.|.-+++||+|+++++-|-+.|..|++..-+.. ++++---|.++++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 557778899999999999999999999988776654 5666555655554
No 124
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=41.70 E-value=83 Score=28.24 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=33.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETT 380 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~ 380 (399)
.|+|.-++++|-|..++.+|-+.|+.+.-.+|.-.+++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 48889999999999999999999999999998765554
No 125
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=41.38 E-value=69 Score=36.20 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=40.7
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~-~Vlytf~vKVe 390 (399)
.+.|.|...+++|+|.+|+++|-+.+..|++++..+.++ .....|.+.|.
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~ 677 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK 677 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC
Confidence 477999999999999999999999999999999977643 33344555554
No 126
>PRK11899 prephenate dehydratase; Provisional
Probab=40.94 E-value=1.1e+02 Score=30.48 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
..|-+..++++|.|.+||.++-..|+.+.....-.. +...-|.|.+.++
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e 244 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE 244 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE
Confidence 344455578999999999999999999999998765 4557789988888
No 127
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=40.89 E-value=78 Score=38.88 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=41.3
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee---CC--eEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS---ET--TVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv---~~--~Vlytf~vKVe 390 (399)
+.+.++|....++..|++|+-+|+++||.|+...-..+ ++ ..+|.|.+...
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~ 543 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP 543 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC
Confidence 46899999999999999999999999999999874322 22 45677777766
No 128
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=39.89 E-value=12 Score=38.57 Aligned_cols=13 Identities=54% Similarity=1.068 Sum_probs=11.4
Q ss_pred CCCccCCCCccHH
Q 015848 67 TPSVFPFKEPNFQ 79 (399)
Q Consensus 67 ~~~~~~~~~~~~~ 79 (399)
-|.||||+||++.
T Consensus 253 rpsyFPFTEPS~E 265 (335)
T COG0016 253 RPSYFPFTEPSAE 265 (335)
T ss_pred ecCCCCCCCCeEE
Confidence 5999999999965
No 129
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=38.14 E-value=34 Score=23.60 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 015848 217 VERNRRRQMNDHLNTLRS 234 (399)
Q Consensus 217 ~ER~RR~~mn~~~~~Lrs 234 (399)
.=|+||++++.++..||+
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 338999999999999986
No 130
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=37.81 E-value=1.3e+02 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEE
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNIT 375 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnIT 375 (399)
..+|.+.+++++|.+.++.|.-.+.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEec
Confidence 56789999999999999999777654
No 131
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=36.61 E-value=1.3e+02 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 349 PRRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 349 ~kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
++.+|.+.+|+++|.+.|+.|.-...
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 56789999999999999999975543
No 132
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=36.00 E-value=1e+02 Score=25.68 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEE
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLK 388 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~vK 388 (399)
..+.|....+|+.|.+|+.+.+.-|+.|-..|.+.. ++.+-.-|.|+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~ 52 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD 52 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc
Confidence 456777889999999999999999999999999876 45544444443
No 133
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=35.38 E-value=1.7e+02 Score=22.75 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEE
Q 015848 349 PRRPGQLLKAIVALEDLRLTFLHLN 373 (399)
Q Consensus 349 ~kr~GlL~kIL~aLEeLgLdVl~An 373 (399)
...+|.+.+|+++|.+.|+.|....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 3468999999999999999997775
No 134
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.63 E-value=2e+02 Score=22.78 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 349 PRRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 349 ~kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
...+|.+.+|+++|.+.|+.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 45689999999999999999988753
No 135
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.62 E-value=1.2e+02 Score=22.85 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=26.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEE
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHY 383 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vly 383 (399)
+.+|++.+++.+|.+.|+.|.-.+..+.+..+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~ 45 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISL 45 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEE
Confidence 4578999999999999999977776555554433
No 136
>PRK08526 threonine dehydratase; Provisional
Probab=31.95 E-value=1.9e+02 Score=30.16 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 015848 339 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 377 (399)
Q Consensus 339 g~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv 377 (399)
|..+.+.|.-+++||.|.+++..+-+.+.+|++......
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~ 362 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRF 362 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEec
Confidence 456889999999999999999999999999999888543
No 137
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=31.71 E-value=64 Score=24.73 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=26.2
Q ss_pred EEEEEEcC----CCCChHHHHHHHHHhCCCeEEEEE
Q 015848 342 VNLKIHCP----RRPGQLLKAIVALEDLRLTFLHLN 373 (399)
Q Consensus 342 v~IkI~C~----kr~GlL~kIL~aLEeLgLdVl~An 373 (399)
..|.|.++ ..+|++.+|..+|-+.|+.|...+
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45666666 478999999999999999998887
No 138
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=31.60 E-value=1.4e+02 Score=31.99 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
..|-+.-.+++|.|.+||..+...|+.+++...-.. ....-|.|.+.++
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e 66 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD 66 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe
Confidence 344445577899999999999999999999998544 3445577888876
No 139
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=30.67 E-value=21 Score=36.83 Aligned_cols=12 Identities=58% Similarity=1.110 Sum_probs=10.7
Q ss_pred CCCccCCCCccH
Q 015848 67 TPSVFPFKEPNF 78 (399)
Q Consensus 67 ~~~~~~~~~~~~ 78 (399)
-|.||||+||.+
T Consensus 246 rpsyFPFTePS~ 257 (339)
T PRK00488 246 RPSYFPFTEPSA 257 (339)
T ss_pred cCCCCCCCCCce
Confidence 489999999987
No 140
>PRK11898 prephenate dehydratase; Provisional
Probab=30.42 E-value=1.7e+02 Score=29.18 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=39.2
Q ss_pred EEEEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeec
Q 015848 342 VNLKIHCPR-RPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKVLV 391 (399)
Q Consensus 342 v~IkI~C~k-r~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKVec 391 (399)
..|-+...+ ++|.|.++|..+...|+.+++...-... ...-|.|.+.+++
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg 248 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEG 248 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEc
Confidence 445556655 5999999999999999999999987654 4456888888874
No 141
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=29.25 E-value=2.8e+02 Score=21.83 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.5
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 344 LKIHCP---RRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 344 IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
|.|.+. ..+|.+.+|+++|.+.|+.|-....
T Consensus 4 I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 4 INIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 444444 3589999999999999999988853
No 142
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.20 E-value=2.9e+02 Score=22.25 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=25.1
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 343 NLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 343 ~IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
+|.|... ..+|.+.+|+++|.+.|+.|-....
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 3444444 4689999999999999999988853
No 143
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=28.46 E-value=46 Score=37.47 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=39.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLK 388 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vK 388 (399)
..++|...+|+|+|..|+.+|. +|.-|.++|.|..++-.|-++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 5789999999999999999999 999999999999998887775
No 144
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.07 E-value=1.5e+02 Score=22.73 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 015848 218 ERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSL 267 (399)
Q Consensus 218 ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~L 267 (399)
=|.-|=.+..++..+..++-. ++ .++|.+||+.+-..++.+
T Consensus 16 lR~~RHD~~NhLqvI~gllql---g~------~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQL---GK------YEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---T-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC---CC------HHHHHHHHHHHHHHHHHH
Confidence 378888888999999998865 44 678899999998888776
No 145
>PRK06291 aspartate kinase; Provisional
Probab=27.47 E-value=2.4e+02 Score=29.93 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=34.0
Q ss_pred EeCCEEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEE
Q 015848 337 VIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVH 382 (399)
Q Consensus 337 vig~~v~IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vl 382 (399)
...+-+.|.|... ..+|.+.+|+.+|.+.|+.|...+-.+.+..+.
T Consensus 317 ~~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIs 365 (465)
T PRK06291 317 LIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNIS 365 (465)
T ss_pred eeCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEE
Confidence 3455678888875 468999999999999999998776444443333
No 146
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.50 E-value=1.9e+02 Score=20.10 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEE
Q 015848 349 PRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNL 387 (399)
Q Consensus 349 ~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~v 387 (399)
.+.+|.+.+|+.+|.+.|+.|...+.... ++.+..+|.+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v 48 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTV 48 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEE
Confidence 56789999999999999999977665322 2224444444
No 147
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=25.60 E-value=1.7e+02 Score=31.53 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEE-EEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVH-YSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vl-ytf~vKVe 390 (399)
+.|-+.-.+++|.|.+||..+...|+.++|...-... ...- |.|.+.++
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 3444555778999999999999999999999986543 3344 77777777
No 148
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=24.90 E-value=87 Score=31.91 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015848 254 IDFVKELEQLLQSLEAQKRM 273 (399)
Q Consensus 254 I~YIk~Lq~~v~~Le~~~~~ 273 (399)
=+|||-|+.||.-|+.+...
T Consensus 311 KEYVKCLENRVAVLENQNKa 330 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNKA 330 (348)
T ss_pred hHHHHHHHhHHHHHhcccHH
Confidence 37999999999999876543
No 149
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=24.86 E-value=2.7e+02 Score=28.49 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred EEEeCCEEEEEEE---cCCCCChHHHHHHHHHhCCCeEEEEEEE
Q 015848 335 VIVIHNHVNLKIH---CPRRPGQLLKAIVALEDLRLTFLHLNIT 375 (399)
Q Consensus 335 V~vig~~v~IkI~---C~kr~GlL~kIL~aLEeLgLdVl~AnIT 375 (399)
|....+-+.|.|. -..++|.+.+|+.+|.+.++.|...+.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 4445667788888 4567899999999999999999876553
No 150
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.60 E-value=2.6e+02 Score=19.80 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
+.+|.+.+|+.+|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4589999999999999999977763
No 151
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.16 E-value=2.5e+02 Score=22.08 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 349 PRRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 349 ~kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
...+|.+.+|+++|.+.|+.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 35689999999999999999988853
No 152
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=21.88 E-value=2.1e+02 Score=21.76 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 015848 351 RPGQLLKAIVALEDLRLTFLHLNITSSETT 380 (399)
Q Consensus 351 r~GlL~kIL~aLEeLgLdVl~AnITtv~~~ 380 (399)
++|++.+++.+|.+.|+.|.-.+.+..+-.
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~ 43 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVD 43 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeE
Confidence 578999999999999999976665544333
No 153
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=21.76 E-value=3.3e+02 Score=28.51 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=38.1
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeec
Q 015848 346 IHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVLV 391 (399)
Q Consensus 346 I~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVec 391 (399)
+.-+++||.|.++|..|-..|+.+.....-.. +...-|.|.+.+++
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg 348 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQA 348 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeC
Confidence 33368999999999999999999999988654 45577999998883
No 154
>PLN02705 beta-amylase
Probab=21.57 E-value=7.4e+02 Score=28.01 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=17.9
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHhc
Q 015848 211 RMTHIAVERNRRRQMNDHLNTLRSL 235 (399)
Q Consensus 211 r~~H~~~ER~RR~~mn~~~~~LrsL 235 (399)
|.+....||+||---..-|.-||..
T Consensus 85 ~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 85 KERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 5566789999997666666666654
No 155
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=21.55 E-value=3.4e+02 Score=27.35 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEee
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vKVe 390 (399)
..|-+.-+++||.|+++|..|-..|++......-.. .+..-|.|.+.++
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e 244 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE 244 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe
Confidence 344445559999999999999999999999988654 4667799999988
No 156
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=20.28 E-value=41 Score=36.42 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=11.2
Q ss_pred CCCccCCCCccHH
Q 015848 67 TPSVFPFKEPNFQ 79 (399)
Q Consensus 67 ~~~~~~~~~~~~~ 79 (399)
-|.||||+||.+.
T Consensus 416 rP~yfPfTEPS~E 428 (494)
T PTZ00326 416 KPAFNPYTEPSME 428 (494)
T ss_pred ecCCCCCCCCeeE
Confidence 4899999999964
No 157
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=20.11 E-value=3.3e+02 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
..+|.+.+|+.+|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4589999999999999999977763
Done!