Query 015848
Match_columns 399
No_of_seqs 228 out of 1226
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.4E-15 4.7E-20 122.9 8.0 66 209-275 5-70 (82)
2 1hlo_A Protein (transcription 99.5 8.9E-15 3E-19 117.3 7.2 69 207-275 9-77 (80)
3 1nkp_B MAX protein, MYC proto- 99.5 1.1E-14 3.8E-19 117.4 7.7 66 210-275 2-67 (83)
4 4h10_B Circadian locomoter out 99.5 1.6E-14 5.3E-19 114.0 6.2 61 207-268 5-65 (71)
5 1nkp_A C-MYC, MYC proto-oncoge 99.5 4.5E-14 1.5E-18 115.6 8.1 68 207-274 3-71 (88)
6 1an4_A Protein (upstream stimu 99.4 2.8E-14 9.6E-19 110.0 2.6 56 209-264 4-63 (65)
7 1nlw_A MAD protein, MAX dimeri 99.4 7E-13 2.4E-17 106.7 8.7 65 211-275 2-67 (80)
8 1a0a_A BHLH, protein (phosphat 99.4 4.7E-14 1.6E-18 108.7 1.7 55 210-264 2-61 (63)
9 4ati_A MITF, microphthalmia-as 99.4 4.8E-13 1.6E-17 115.0 7.8 62 210-271 27-90 (118)
10 4h10_A ARYL hydrocarbon recept 99.4 1.6E-13 5.4E-18 108.8 3.5 56 206-261 5-62 (73)
11 3u5v_A Protein MAX, transcript 99.3 4.3E-13 1.5E-17 107.0 3.3 60 209-268 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 9.2E-12 3.1E-16 97.4 6.1 59 207-265 9-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 5.8E-11 2E-15 90.7 6.2 57 209-265 1-58 (60)
14 4f3l_A Mclock, circadian locom 98.8 2.5E-09 8.6E-14 105.7 5.8 55 208-263 10-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 1.8E-08 6.3E-13 100.7 5.7 54 209-262 12-67 (387)
16 2lfh_A DNA-binding protein inh 98.5 2.8E-08 9.7E-13 77.5 1.8 47 216-262 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.1 6.3E-06 2.2E-10 66.6 6.8 51 222-272 4-56 (83)
18 4aya_A DNA-binding protein inh 98.0 1E-05 3.5E-10 67.2 6.4 49 217-265 32-81 (97)
19 1zpv_A ACT domain protein; str 96.2 0.025 8.5E-07 44.2 9.0 50 341-390 5-54 (91)
20 2nyi_A Unknown protein; protei 95.6 0.04 1.4E-06 49.8 8.7 48 341-388 5-52 (195)
21 1u8s_A Glycine cleavage system 95.6 0.045 1.5E-06 48.9 8.7 49 341-389 6-54 (192)
22 2ko1_A CTR148A, GTP pyrophosph 95.3 0.067 2.3E-06 41.0 7.8 49 341-389 5-53 (88)
23 2nyi_A Unknown protein; protei 93.8 0.18 6.3E-06 45.4 8.2 39 340-378 92-130 (195)
24 1u8s_A Glycine cleavage system 92.4 0.44 1.5E-05 42.4 8.3 38 341-378 93-130 (192)
25 3p96_A Phosphoserine phosphata 88.3 1.3 4.4E-05 43.6 8.4 51 340-390 11-61 (415)
26 3obi_A Formyltetrahydrofolate 83.6 2.3 7.8E-05 41.0 7.2 37 340-376 5-41 (288)
27 3n0v_A Formyltetrahydrofolate 83.6 2.3 8E-05 40.9 7.3 38 340-377 7-44 (286)
28 3o1l_A Formyltetrahydrofolate 83.1 2.8 9.5E-05 40.8 7.6 37 341-377 22-58 (302)
29 3nrb_A Formyltetrahydrofolate 82.9 2.9 9.8E-05 40.3 7.6 37 340-376 6-42 (287)
30 3lou_A Formyltetrahydrofolate 82.3 2.6 8.9E-05 40.8 7.0 37 340-376 9-45 (292)
31 2f1f_A Acetolactate synthase i 82.0 2.8 9.6E-05 37.3 6.6 47 342-388 4-52 (164)
32 2pc6_A Probable acetolactate s 79.0 3.1 0.00011 37.1 5.9 47 342-388 5-53 (165)
33 2fgc_A Acetolactate synthase, 73.6 7.9 0.00027 35.5 7.1 48 342-389 30-79 (193)
34 1y7p_A Hypothetical protein AF 72.3 5.7 0.0002 37.3 5.9 38 341-378 4-41 (223)
35 2f06_A Conserved hypothetical 58.1 31 0.001 28.7 7.4 44 344-387 75-118 (144)
36 2re1_A Aspartokinase, alpha an 54.5 44 0.0015 28.7 8.0 50 334-385 96-148 (167)
37 2dtj_A Aspartokinase; protein- 53.9 38 0.0013 29.6 7.6 53 336-388 10-66 (178)
38 2re1_A Aspartokinase, alpha an 48.0 35 0.0012 29.4 6.3 54 335-388 19-74 (167)
39 2f06_A Conserved hypothetical 47.0 63 0.0022 26.7 7.6 34 343-376 8-41 (144)
40 2dt9_A Aspartokinase; protein- 39.9 46 0.0016 28.6 5.7 39 336-374 11-50 (167)
41 2qmx_A Prephenate dehydratase; 34.0 75 0.0026 30.4 6.7 48 343-390 202-250 (283)
42 2rrl_A FLIK, flagellar HOOK-le 33.6 83 0.0029 28.1 6.4 48 330-377 100-153 (169)
43 2dt9_A Aspartokinase; protein- 32.9 1.1E+02 0.0039 26.0 7.1 40 334-373 88-130 (167)
44 2l5g_A GPS2 protein, G protein 32.2 73 0.0025 21.8 4.4 31 244-274 4-34 (38)
45 2qmw_A PDT, prephenate dehydra 30.9 71 0.0024 30.3 5.9 50 341-390 186-239 (267)
46 3ab4_A Aspartokinase; aspartat 30.6 1.3E+02 0.0046 29.7 8.1 40 335-374 258-298 (421)
47 2dtj_A Aspartokinase; protein- 30.2 90 0.0031 27.1 6.1 47 334-382 88-137 (178)
48 3he4_B Synzip5; heterodimeric 30.1 68 0.0023 22.2 4.0 25 250-274 5-29 (46)
49 2er8_A Regulatory protein Leu3 29.0 36 0.0012 25.0 2.8 21 254-274 48-68 (72)
50 2wt7_A Proto-oncogene protein 26.7 58 0.002 24.1 3.5 42 218-274 1-42 (63)
51 1zme_C Proline utilization tra 26.1 54 0.0018 23.8 3.3 22 254-275 43-64 (70)
52 3luy_A Probable chorismate mut 25.7 2.1E+02 0.0071 27.9 8.3 41 350-390 217-258 (329)
53 3mwb_A Prephenate dehydratase; 24.5 1.3E+02 0.0043 29.3 6.4 49 342-390 202-252 (313)
54 1pd7_B MAD1; PAH2, SIN3, eukar 23.8 87 0.003 19.8 3.3 19 244-262 2-20 (26)
55 4go7_X Aspartokinase; transfer 23.7 1.6E+02 0.0054 26.6 6.6 54 336-389 30-87 (200)
56 3s1t_A Aspartokinase; ACT doma 23.4 1.9E+02 0.0065 25.3 7.0 37 337-373 12-49 (181)
57 3s1t_A Aspartokinase; ACT doma 22.0 1.7E+02 0.0058 25.6 6.3 48 334-383 89-139 (181)
58 1p3q_Q VPS9P, vacuolar protein 20.6 87 0.003 23.0 3.3 23 216-238 3-25 (54)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.60 E-value=1.4e-15 Score=122.88 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=61.6
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 275 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l~ 275 (399)
.+|.+|+.+||+||.+||+.|..|++|||.. ..|+||++||.+||+||+.|+.+++.|+.+...+.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999984 48999999999999999999999999999887664
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=8.9e-15 Score=117.34 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=63.0
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015848 207 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 275 (399)
Q Consensus 207 ~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l~ 275 (399)
...+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||+.|+++++.|+.+++.+.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999984347999999999999999999999999999987654
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.54 E-value=1.1e-14 Score=117.39 Aligned_cols=66 Identities=21% Similarity=0.383 Sum_probs=60.6
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015848 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 275 (399)
Q Consensus 210 ~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l~ 275 (399)
+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||+.|+.+++.|+.+++.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999984457999999999999999999999999998887654
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=113.99 Aligned_cols=61 Identities=25% Similarity=0.477 Sum_probs=55.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 015848 207 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLE 268 (399)
Q Consensus 207 ~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~Le 268 (399)
...+|.+|+.+||+||.+||+.|..|++|||.. ..|+||++||..||+||+.||.++..|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346799999999999999999999999999974 5799999999999999999999988764
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=4.5e-14 Score=115.57 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=60.0
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015848 207 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 207 ~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~-~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l 274 (399)
+..+|..|+.+||+||..||+.|..|+++||.. ...|.+|++||.+||+||+.|+.+.+.|..+++.+
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999983 13699999999999999999999999888776554
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=2.8e-14 Score=110.02 Aligned_cols=56 Identities=29% Similarity=0.503 Sum_probs=49.8
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCChhhhHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYV----QRGDQASIIGGAIDFVKELEQLL 264 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~----~K~dKasIL~eAI~YIk~Lq~~v 264 (399)
.+|.+|+.+||+||.+||+.|..|++|||.... .|++|++||..||+||+.|+++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999998432 27899999999999999999764
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.40 E-value=7e-13 Score=106.75 Aligned_cols=65 Identities=28% Similarity=0.294 Sum_probs=58.6
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015848 211 RMTHIAVERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 275 (399)
Q Consensus 211 r~~H~~~ER~RR~~mn~~~~~LrsLvP~~-~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l~ 275 (399)
|..|+..||+||..||+.|..|+++||.. ...|.+|++||..||+||+.|+++.+.|..+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999962 246888999999999999999999999998887654
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.40 E-value=4.7e-14 Score=108.75 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=49.0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCChhhhHHHHHHHHHHHHHHH
Q 015848 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-----VQRGDQASIIGGAIDFVKELEQLL 264 (399)
Q Consensus 210 ~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~-----~~K~dKasIL~eAI~YIk~Lq~~v 264 (399)
+|.+|+.+||+||.+||..|..|++|||..+ .++.+||+||+.||+||+.||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999621 257789999999999999999765
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.39 E-value=4.8e-13 Score=114.96 Aligned_cols=62 Identities=24% Similarity=0.482 Sum_probs=52.4
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015848 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAY--VQRGDQASIIGGAIDFVKELEQLLQSLEAQK 271 (399)
Q Consensus 210 ~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~--~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~ 271 (399)
+|.+|+.+||+||.+||++|..|++|||... ..|++|++||..||+||+.|+.+++.|+...
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999732 2478899999999999999999999998754
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.38 E-value=1.6e-13 Score=108.80 Aligned_cols=56 Identities=27% Similarity=0.516 Sum_probs=50.1
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHHHHH
Q 015848 206 EVESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY--VQRGDQASIIGGAIDFVKELE 261 (399)
Q Consensus 206 e~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~--~~K~dKasIL~eAI~YIk~Lq 261 (399)
+...+|.+|+.+||+||++||+.|..|++|||.+. ..|+||++||..||+||+.|+
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~ 62 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999731 379999999999999999987
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.33 E-value=4.3e-13 Score=107.03 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=48.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCC-ChhhhHHHHHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPP-AYVQRG-DQASIIGGAIDFVKELEQLLQSLE 268 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~-~~~~K~-dKasIL~eAI~YIk~Lq~~v~~Le 268 (399)
.+|..|+..||+||..||+.|..||.+||. ....|. .|++||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999994 213444 688999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.23 E-value=9.2e-12 Score=97.38 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=52.9
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 015848 207 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQ 265 (399)
Q Consensus 207 ~es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~ 265 (399)
...+|..|+..||+|+..||+.|..||.+||.....|++|+.||..||+||..|++.++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34579999999999999999999999999997545799999999999999999997653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.14 E-value=5.8e-11 Score=90.66 Aligned_cols=57 Identities=30% Similarity=0.408 Sum_probs=50.9
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQLLQ 265 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~-~~~K~dKasIL~eAI~YIk~Lq~~v~ 265 (399)
++|..|+..||+|+..||+.|..||.+||.. ...|..|+.||..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999972 24689999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.82 E-value=2.5e-09 Score=105.66 Aligned_cols=55 Identities=24% Similarity=0.504 Sum_probs=42.8
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHH
Q 015848 208 ESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQL 263 (399)
Q Consensus 208 es~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~ 263 (399)
..+|.+|+.+||+||++||..|..|++|||.. ..|+||++||..||.||+.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~-~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence 34678899999999999999999999999943 68999999999999999999754
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.65 E-value=1.8e-08 Score=100.68 Aligned_cols=54 Identities=28% Similarity=0.507 Sum_probs=48.5
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHHHHHH
Q 015848 209 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVKELEQ 262 (399)
Q Consensus 209 s~r~~H~~~ER~RR~~mn~~~~~LrsLvP~~--~~~K~dKasIL~eAI~YIk~Lq~ 262 (399)
.+|.+|+.+||+||++||..|..|++|||.+ ...|+||++||..||.|||.|+.
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3578999999999999999999999999931 15899999999999999999874
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.50 E-value=2.8e-08 Score=77.46 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHH
Q 015848 216 AVERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQ 262 (399)
Q Consensus 216 ~~ER~RR~~mn~~~~~LrsLvP~~-~~~K~dKasIL~eAI~YIk~Lq~ 262 (399)
..||+|+..||+.|..||.+||.. ...|+.|+.||.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 458999999999999999999972 24688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.09 E-value=6.3e-06 Score=66.58 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015848 222 RRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVKELEQLLQSLEAQKR 272 (399)
Q Consensus 222 R~~mn~~~~~LrsLvP~~--~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~ 272 (399)
|..||+++..|..|||.+ ...|..|.+||..|++||+.||+.++.+.+...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999973 235788999999999999999988887776543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.99 E-value=1e-05 Score=67.19 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHH
Q 015848 217 VERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQLLQ 265 (399)
Q Consensus 217 ~ER~RR~~mn~~~~~LrsLvP~~-~~~K~dKasIL~eAI~YIk~Lq~~v~ 265 (399)
.||+|=..||+.|..||.+||.. ..+|..|+.+|.-||+||..|++-++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 35888899999999999999972 24689999999999999999997664
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.23 E-value=0.025 Score=44.18 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
.+.|.|.|++++|+|.+|..+|-+.|..|++.+....++.....+.+.+.
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~ 54 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD 54 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence 47899999999999999999999999999999998877755555555443
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.61 E-value=0.04 Score=49.81 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=41.7
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLK 388 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vK 388 (399)
.+.|.|.|++++|++.+|..+|.++|+.|+.+++.+..+...-.+.+.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~ 52 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS 52 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence 478999999999999999999999999999999988777655455554
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.56 E-value=0.045 Score=48.94 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=43.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKV 389 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKV 389 (399)
.+.|.|.|++++|++.+|..+|..+|+.|+.+++.+..+.....+.+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 4789999999999999999999999999999999888777666666643
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.27 E-value=0.067 Score=41.01 Aligned_cols=49 Identities=6% Similarity=0.106 Sum_probs=40.5
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKV 389 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKV 389 (399)
.+.|.|.+.+++|+|.+|..+|.+.|+.|.++++...++.....|.+.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 3678999999999999999999999999999999876664444555554
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.80 E-value=0.18 Score=45.39 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=36.3
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE 378 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~ 378 (399)
..+.|.|.|++++|++..|-.+|-++|+.|+.++..+.+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 357899999999999999999999999999999998876
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=92.35 E-value=0.44 Score=42.38 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=35.3
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE 378 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~ 378 (399)
.+.|.|.|++++|++.+|..+|-+.|++|..+...+.+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 46799999999999999999999999999999998765
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=88.31 E-value=1.3 Score=43.64 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=43.5
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKVL 390 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~vKVe 390 (399)
..+.|.|.|++|+|+...|...|-++|..|+.++-+..++..+-.+.+.+.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~ 61 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP 61 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec
Confidence 357899999999999999999999999999999998888865555555544
No 26
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=83.61 E-value=2.3 Score=41.04 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=34.1
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
..+.|.|.|++++|+..+|...|-++|+.|+.++-.+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~ 41 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYN 41 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeee
Confidence 3578999999999999999999999999999999864
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=83.57 E-value=2.3 Score=40.93 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=34.6
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 377 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv 377 (399)
..+.|.|.|++++|+..+|...|-++|+.|+.++-++.
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d 44 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD 44 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence 34789999999999999999999999999999998753
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=83.11 E-value=2.8 Score=40.81 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=34.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 377 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv 377 (399)
.+.|.|.|++++|+...|...|-++|+.|+.++-+..
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 4789999999999999999999999999999998865
No 29
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=82.93 E-value=2.9 Score=40.31 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=34.2
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
..+.|.|.|++++|+..+|...|-++|+.|+.++-.+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 42 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN 42 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence 3578999999999999999999999999999999864
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=82.30 E-value=2.6 Score=40.76 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=34.4
Q ss_pred CEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 340 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 340 ~~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
..+.|.|.|++++|+..+|...|-++|+.|+.++-++
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 45 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD 45 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence 3578999999999999999999999999999999875
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=81.96 E-value=2.8 Score=37.30 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=39.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEE
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLK 388 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~--~~Vlytf~vK 388 (399)
..|.|...+++|+|.+|..+|...|+.|.++++.... +....+|.+.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 4688999999999999999999999999999996443 5666677765
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=78.97 E-value=3.1 Score=37.10 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEE
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLK 388 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv--~~~Vlytf~vK 388 (399)
..|.|...+++|+|.+|..+|...|+.|.++++... .+....+|.+.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 468889999999999999999999999999999643 36666777775
No 33
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=73.62 E-value=7.9 Score=35.50 Aligned_cols=48 Identities=8% Similarity=0.098 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eC-CeEEEEEEEEe
Q 015848 342 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SE-TTVHYSFNLKV 389 (399)
Q Consensus 342 v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt-v~-~~Vlytf~vKV 389 (399)
..|.|..++++|.|.+|..+|...|+.|.+.++.. -+ +....+|.+.-
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g 79 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG 79 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC
Confidence 56888889999999999999999999999999863 33 66677777753
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=72.26 E-value=5.7 Score=37.26 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=30.9
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 015848 341 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE 378 (399)
Q Consensus 341 ~v~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~ 378 (399)
.+.|.|.+.+|+|+|.+|+.+|-+.+..|.+.+.....
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 46799999999999999999999999999999997753
No 35
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=58.08 E-value=31 Score=28.66 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEE
Q 015848 344 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNL 387 (399)
Q Consensus 344 IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf~v 387 (399)
|-+.-+++||.+.+|+++|.+.|+.|...-.+..++.....|.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 45556799999999999999999999765554234554444443
No 36
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=54.54 E-value=44 Score=28.72 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=37.4
Q ss_pred EEEEeCCEEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEE
Q 015848 334 EVIVIHNHVNLKIHCPR---RPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSF 385 (399)
Q Consensus 334 EV~vig~~v~IkI~C~k---r~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vlytf 385 (399)
.|....+-+.|.|.... ++|.+.+++.+|.+.|+.|...+ +....+.+.+
T Consensus 96 ~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv 148 (167)
T 2re1_A 96 SIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI 148 (167)
T ss_dssp EEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred eEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE
Confidence 34455667788888876 79999999999999999998854 4444444443
No 37
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=53.94 E-value=38 Score=29.55 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=35.4
Q ss_pred EEeCCEEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 015848 336 IVIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLNITSS---ETTVHYSFNLK 388 (399)
Q Consensus 336 ~vig~~v~IkI~-C~kr~GlL~kIL~aLEeLgLdVl~AnITtv---~~~Vlytf~vK 388 (399)
....+.+.|.|. -++++|.+.+|+..|.+.|+.|.....++. ++..-++|.+.
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 344566777773 478899999999999999966655544333 23444455554
No 38
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=48.02 E-value=35 Score=29.38 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=36.3
Q ss_pred EEEeCCEEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEE
Q 015848 335 VIVIHNHVNLKIHC-PRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLK 388 (399)
Q Consensus 335 V~vig~~v~IkI~C-~kr~GlL~kIL~aLEeLgLdVl~AnITtv-~~~Vlytf~vK 388 (399)
|....+.+.|.|.. ++++|.+.+|+.+|.+.|+.|.....+.. ++....+|.+.
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 33445667777774 78899999999999999999877654321 34333444443
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=47.02 E-value=63 Score=26.66 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS 376 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITt 376 (399)
.|.|.-++++|.|.+|..+|.+.|+.|....+..
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 4667778999999999999999999998877653
No 40
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=39.95 E-value=46 Score=28.58 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.5
Q ss_pred EEeCCEEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 336 IVIHNHVNLKIHC-PRRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 336 ~vig~~v~IkI~C-~kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
....+.+.|.|.. ++++|.+.+|+.+|.+.|+.|.....
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q 50 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQ 50 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEB
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 3445556666654 67899999999999999888776654
No 41
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=34.04 E-value=75 Score=30.37 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=38.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEee
Q 015848 343 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKVL 390 (399)
Q Consensus 343 ~IkI~C~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKVe 390 (399)
.|-+.-++++|.|.++|..|...|+.+.....-... ...-|.|.+.++
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e 250 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI 250 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe
Confidence 333444689999999999999999999999986554 456788888887
No 42
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=33.56 E-value=83 Score=28.10 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=41.3
Q ss_pred CceEEEEEeCCEEEEEEEcCCC------CChHHHHHHHHHhCCCeEEEEEEEee
Q 015848 330 GAEIEVIVIHNHVNLKIHCPRR------PGQLLKAIVALEDLRLTFLHLNITSS 377 (399)
Q Consensus 330 ~~eVEV~vig~~v~IkI~C~kr------~GlL~kIL~aLEeLgLdVl~AnITtv 377 (399)
..+|.|++.++.+.|.+..... ...|.++-++|.+-||.+..++|+..
T Consensus 100 ~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 100 QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 4578888889999999999986 35688999999999999999999754
No 43
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=32.91 E-value=1.1e+02 Score=25.99 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.0
Q ss_pred EEEEeCCEEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEE
Q 015848 334 EVIVIHNHVNLKIHCPR---RPGQLLKAIVALEDLRLTFLHLN 373 (399)
Q Consensus 334 EV~vig~~v~IkI~C~k---r~GlL~kIL~aLEeLgLdVl~An 373 (399)
.|.+.++-+.|.|.... .+|++.+++++|.+.|+.|.-.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 56666777888888875 89999999999999999995543
No 44
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.20 E-value=73 Score=21.79 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.5
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015848 244 GDQASIIGGAIDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 244 ~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l 274 (399)
+..+.-|+++-+-|..|+.+++.|+.++..+
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999988653
No 45
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=30.86 E-value=71 Score=30.31 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=39.0
Q ss_pred EEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEee
Q 015848 341 HVNLKIHC---PRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKVL 390 (399)
Q Consensus 341 ~v~IkI~C---~kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKVe 390 (399)
...|-+.. .+++|.|.++|..|...|+.+.....-... ...-|.|.+.++
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 34455555 789999999999999999999999986554 345577777765
No 46
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=30.58 E-value=1.3e+02 Score=29.70 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=33.3
Q ss_pred EEEeCCEEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEE
Q 015848 335 VIVIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLNI 374 (399)
Q Consensus 335 V~vig~~v~IkI~-C~kr~GlL~kIL~aLEeLgLdVl~AnI 374 (399)
|....+.+.|.|. .+.++|.+.+|+.+|.+.|+.|.....
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q 298 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 298 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc
Confidence 4556677888887 578899999999999999999887754
No 47
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=30.17 E-value=90 Score=27.10 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=35.4
Q ss_pred EEEEeCCEEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEE
Q 015848 334 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVH 382 (399)
Q Consensus 334 EV~vig~~v~IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vl 382 (399)
.|...++-+.|.|... ..+|++.+++.+|.+.|+.|.-.+ +....+.
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is 137 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRIS 137 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEE
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEE
Confidence 3556677788888876 568999999999999999997744 4444433
No 48
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.07 E-value=68 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 015848 250 IGGAIDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 250 L~eAI~YIk~Lq~~v~~Le~~~~~l 274 (399)
+.+--+||++|+++-.+|+.-++.+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 5677899999999999988766544
No 49
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=29.02 E-value=36 Score=25.00 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 015848 254 IDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 254 I~YIk~Lq~~v~~Le~~~~~l 274 (399)
-.||..|+.+|..|+..+..+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999988754
No 50
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.69 E-value=58 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015848 218 ERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 274 (399)
Q Consensus 218 ER~RR~~mn~~~~~LrsLvP~~~~~K~dKasIL~eAI~YIk~Lq~~v~~Le~~~~~l 274 (399)
||++|.....+..+-++ . ..-..||..|+.++..|+.+...+
T Consensus 1 Ekr~rrrerNR~AA~rc---R------------~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC---R------------NRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHH---H------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH---H------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777777766 1 122566777777777776665544
No 51
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.07 E-value=54 Score=23.77 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 015848 254 IDFVKELEQLLQSLEAQKRMRM 275 (399)
Q Consensus 254 I~YIk~Lq~~v~~Le~~~~~l~ 275 (399)
-.||..|+.++..|+..+..+.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999988887653
No 52
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=25.67 E-value=2.1e+02 Score=27.93 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=35.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEee
Q 015848 350 RRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKVL 390 (399)
Q Consensus 350 kr~GlL~kIL~aLEeLgLdVl~AnITtv~~-~Vlytf~vKVe 390 (399)
+++|.|.++|..|...|+.......-...+ ..-|.|.+.++
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 258 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD 258 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe
Confidence 589999999999999999999999876654 45688988887
No 53
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=24.53 E-value=1.3e+02 Score=29.28 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=38.8
Q ss_pred EEEEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEee
Q 015848 342 VNLKIHCP-RRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKVL 390 (399)
Q Consensus 342 v~IkI~C~-kr~GlL~kIL~aLEeLgLdVl~AnITtv~-~~Vlytf~vKVe 390 (399)
..|-+.-+ +++|.|.++|..|...|+.+.....-... ...-|.|.+.++
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 252 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD 252 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe
Confidence 44555665 79999999999999999999999986544 444588888777
No 54
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.83 E-value=87 Score=19.78 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=15.0
Q ss_pred CChhhhHHHHHHHHHHHHH
Q 015848 244 GDQASIIGGAIDFVKELEQ 262 (399)
Q Consensus 244 ~dKasIL~eAI~YIk~Lq~ 262 (399)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567789999999986665
No 55
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=23.69 E-value=1.6e+02 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=37.4
Q ss_pred EEeCCEEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEE--EEee-CCeEEEEEEEEe
Q 015848 336 IVIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLN--ITSS-ETTVHYSFNLKV 389 (399)
Q Consensus 336 ~vig~~v~IkI~-C~kr~GlL~kIL~aLEeLgLdVl~An--ITtv-~~~Vlytf~vKV 389 (399)
....+.+.|.|. .+.++|.+.+|+.+|.+.|+.|-... ++.. ++....+|.+.-
T Consensus 30 a~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 30 AHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred EccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 345566777775 56889999999999999988876653 3322 345566676653
No 56
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.45 E-value=1.9e+02 Score=25.26 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=27.5
Q ss_pred EeCCEEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEE
Q 015848 337 VIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLN 373 (399)
Q Consensus 337 vig~~v~IkI~-C~kr~GlL~kIL~aLEeLgLdVl~An 373 (399)
...+.+.|.|. -+.++|.+.+|+.+|.+.|+.|....
T Consensus 12 ~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 12 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 34455555554 35789999999999999999887654
No 57
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=22.04 E-value=1.7e+02 Score=25.60 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=35.5
Q ss_pred EEEEeCCEEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEE
Q 015848 334 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHY 383 (399)
Q Consensus 334 EV~vig~~v~IkI~C~---kr~GlL~kIL~aLEeLgLdVl~AnITtv~~~Vly 383 (399)
+|.+..+-+.|.|... ..+|++.+++++|.+.|+.|.-.+ +.+-.+.+
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is~ 139 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISV 139 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEE
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEEE
Confidence 4555667777877765 578999999999999999988777 33444443
No 58
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.62 E-value=87 Score=22.96 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 015848 216 AVERNRRRQMNDHLNTLRSLMPP 238 (399)
Q Consensus 216 ~~ER~RR~~mn~~~~~LrsLvP~ 238 (399)
.++|-+|...++-+..|+++.|+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 57888999999999999999999
Done!