BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015851
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 11/235 (4%)
Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183
L + E +K +A L +A P + IVD G + LV LL DS V +
Sbjct: 11 LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSE-------VQK 62
Query: 184 RAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
AA A+ N+A + +IK V GG+ LV+LL TD++VQ+ AA AL +A DE
Sbjct: 63 EAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
IV+ + L+ +L S DS + EA + N+ K ++ AG ++ ++ LL+S
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 181
Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
SE Q+EAA L A+ + IV G V L ++L S D ++++ + AL
Sbjct: 182 TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 7/195 (3%)
Query: 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256
S+IK V GG+ LV+LL TD++VQ+ AA AL +A DE IV+ + L+
Sbjct: 35 SAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 93
Query: 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316
+L S DS + EA + N+ K ++ AG ++ ++ LL+S SE Q+EAA L
Sbjct: 94 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153
Query: 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFI 376
A+ + IV G V L+++L S D ++++ +A AL +A P I
Sbjct: 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG------PTSAIKA 207
Query: 377 IINECQLEVLAFVLS 391
I++ +EVL +L+
Sbjct: 208 IVDAGGVEVLQKLLT 222
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 30/210 (14%)
Query: 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEA 121
V +L +T S ++ K A LA +A +E + IV+ G V LVK L +
Sbjct: 50 VKLLTSTDSEVQ------KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------ 97
Query: 122 DRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
+ EV+K +A AL +A P+ + IVD G + LV LL DS
Sbjct: 98 ------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSE------- 143
Query: 181 VIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239
V + AA A+ N+A + +IK V GG+ LV+LL TD++VQ+ AA AL +A
Sbjct: 144 VQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
IV+ + L +L S DS + EA
Sbjct: 203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 352
++ ++ LL+S SE+Q+EAA L + A+ + IV G V L+++L S D ++++
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 353 SAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLS 391
+A AL +A P I I++ +EVL +L+
Sbjct: 64 AARALANIASG------PDEAIKAIVDAGGVEVLVKLLT 96
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 132
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 133 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 190 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 249
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 250 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 340 EMLQSPDVQLREMSAFAL 357
+L D + ++ +A+A+
Sbjct: 310 GVLSKADFKTQKEAAWAI 327
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 39 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 98
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 99 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 152
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 101 HAHISEQAVWALGNIA 116
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 210 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 254
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 255 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 306
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 307 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 366
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 367 LDAISNIFQAA 377
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 41 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 92
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 93 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 150
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 151 YLRNLTWTLSNL 162
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 132
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 133 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 190 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 249
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 250 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 340 EMLQSPDVQLREMSAFAL 357
+L D + ++ +A+A+
Sbjct: 310 GVLSKADFKTQKEAAWAI 327
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 39 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 98
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 99 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 152
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 101 HAHISEQAVWALGNIA 116
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 210 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 254
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 255 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 306
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 307 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 366
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 367 LDAISNIFQAA 377
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 41 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 92
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 93 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 150
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 151 YLRNLTWTLSNL 162
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 136
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 137 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 194 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 253
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 254 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 340 EMLQSPDVQLREMSAFAL 357
+L D + ++ +A+A+
Sbjct: 314 GVLSKADFKTQKEAAWAI 331
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 43 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 102
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 103 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 156
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 105 HAHISEQAVWALGNIA 120
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 214 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 258
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 259 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 310
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 311 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 370
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 371 LDAISNIFQAA 381
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 45 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 96
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 97 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 154
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 155 YLRNLTWTLSNL 166
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 136
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 137 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 194 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 253
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 254 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 340 EMLQSPDVQLREMSAFAL 357
+L D + ++ +A+A+
Sbjct: 314 GVLSKADFKTQKEAAWAI 331
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 43 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 102
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 103 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 156
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 105 HAHISEQAVWALGNIA 120
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 214 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 258
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 259 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 310
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 311 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 370
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 371 LDAISNIFQAA 381
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 45 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 96
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 97 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 154
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 155 YLRNLTWTLSNL 166
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFAL 357
+L D + ++ +A+A+
Sbjct: 315 GVLSKADFKTQKEAAWAI 332
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 44 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 157
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 106 HAHISEQAVWALGNIA 121
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 46 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 97
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 98 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 155
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 156 YLRNLTWTLSNL 167
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 115 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 163
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 164 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 220
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 221 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 280
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 281 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 340
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 341 GVLSKADFKTQKEAAWAITNYTSGGTV 367
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 70 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 129
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 130 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 183
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 76 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 135
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 136 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 72 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 131
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 132 HAHISEQAVWALGNIA 147
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 34/206 (16%)
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142
AT L E N+ VNW VE +VK + N E +++ A A L
Sbjct: 17 ATSPLQENRNNQGTVNWSVED-----IVKGI----------NSNNLESQLQATQA-ARKL 60
Query: 143 LAVKPEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198
L+ +Q +DN G + V+ L + ++CS + +A A+TN+A +S
Sbjct: 61 LS---REKQPPIDNIIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTS 109
Query: 199 IKTRVRMEGG-IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257
+T+ ++GG IP + LL + A AL +A ++ +++ A+ L+ +
Sbjct: 110 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 169
Query: 258 LRSEDSAIHYEAVGVIGNLVHSSPNI 283
L D + A G + NL + N+
Sbjct: 170 LAVPD--LSTLACGYLRNLTWTLSNL 193
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTV 341
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 44 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 157
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 106 HAHISEQAVWALGNIA 121
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 46 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 97
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 98 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 155
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 156 YLRNLTWTLSNL 167
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTV 341
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 44 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 157
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 106 HAHISEQAVWALGNIA 121
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 46 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 97
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 98 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 155
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 156 YLRNLTWTLSNL 167
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 123 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 171
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 172 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 228
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 229 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 288
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 289 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 348
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 349 GVLSKADFKTQKEAAWAITNYTSGGTV 375
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 78 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 137
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 138 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 191
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 84 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 143
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 144 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 80 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 139
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 140 HAHISEQAVWALGNIA 155
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 249 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 293
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 294 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 345
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 346 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 405
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 406 LDAISNIFQAA 416
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L + ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 80 IIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 131
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 132 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--LSTLACG 189
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 190 YLRNLTWTLSNL 201
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 143
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 144 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 200
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 201 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 260
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 261 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTV 347
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 50 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 109
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 110 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 163
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 116 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 52 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 111
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 112 HAHISEQAVWALGNIA 127
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 87 LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK 146
+A++ N+ VNW VE +VK + N E +++ A A LL+
Sbjct: 1 MADIGSNQGTVNWSVED-----IVKGI----------NSNNLESQLQATQA-ARKLLS-- 42
Query: 147 PEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202
+Q +DN G + V+ L + ++CS + +A A+TN+A +S +T+
Sbjct: 43 -REKQPPIDNIIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTK 93
Query: 203 VRMEGG-IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
++GG IP + LL + A AL +A ++ +++ A+ L+ +L
Sbjct: 94 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 153
Query: 262 DSAIHYEAVGVIGNLVHSSPNI 283
D + A G + NL + N+
Sbjct: 154 D--LSTLACGYLRNLTWTLSNL 173
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 125 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 173
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 174 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 230
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 231 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 290
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 291 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 350
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 351 GVLSKADFKTQKEAAWAITNYTSGGTV 377
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 80 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 139
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 140 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 193
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 86 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 145
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 146 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 82 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 141
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 142 HAHISEQAVWALGNIA 157
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 87 LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK 146
+A++ N+ VNW VE +VK + N E +++ A A LL+
Sbjct: 31 MADIGSNQGTVNWSVED-----IVKGI----------NSNNLESQLQATQA-ARKLLS-- 72
Query: 147 PEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202
+Q +DN G + V+ L + ++CS + +A A+TN+A +S +T+
Sbjct: 73 -REKQPPIDNIIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTK 123
Query: 203 VRMEGG-IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
++GG IP + LL + A AL +A ++ +++ A+ L+ +L
Sbjct: 124 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 183
Query: 262 DSAIHYEAVGVIGNLVHSSPNI 283
D + A G + NL + N+
Sbjct: 184 D--LSTLACGYLRNLTWTLSNL 203
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTV 391
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 207
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 156 HAHISEQAVWALGNIA 171
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 87 LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK 146
+A++ N+ VNW VE +VK + N E +++ A A LL+
Sbjct: 45 MADIGSNQGTVNWSVED-----IVKGI----------NSNNLESQLQATQA-ARKLLS-- 86
Query: 147 PEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202
+Q +DN G + V+ L + ++CS + +A A+TN+A +S +T+
Sbjct: 87 -REKQPPIDNIIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTK 137
Query: 203 VRMEGG-IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
++GG IP + LL + A AL +A ++ +++ A+ L+ +L
Sbjct: 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197
Query: 262 DSAIHYEAVGVIGNLVHSSPNI 283
D + A G + NL + N+
Sbjct: 198 D--LSTLACGYLRNLTWTLSNL 217
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTV 391
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 207
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 156 HAHISEQAVWALGNIA 171
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 87 LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK 146
+A++ N+ VNW VE +VK + N E +++ A A LL+
Sbjct: 45 MADIGSNQGTVNWSVED-----IVKGI----------NSNNLESQLQATQA-ARKLLS-- 86
Query: 147 PEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202
+Q +DN G + V+ L + ++CS + +A A+TN+A +S +T+
Sbjct: 87 -REKQPPIDNIIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTK 137
Query: 203 VRMEGG-IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
++GG IP + LL + A AL +A ++ +++ A+ L+ +L
Sbjct: 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197
Query: 262 DSAIHYEAVGVIGNLVHSSPNI 283
D + A G + NL + N+
Sbjct: 198 D--LSTLACGYLRNLTWTLSNL 217
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTV 391
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 207
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 156 HAHISEQAVWALGNIA 171
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 87 LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK 146
+A++ N+ VNW VE +VK + N E +++ A A LL+
Sbjct: 45 MADIGSNQGTVNWSVED-----IVKGI----------NSNNLESQLQATQA-ARKLLS-- 86
Query: 147 PEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202
+Q +DN G + V+ L + ++CS + +A A+TN+A +S +T+
Sbjct: 87 -REKQPPIDNIIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTSEQTK 137
Query: 203 VRMEGG-IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
++GG IP + LL + A AL +A ++ +++ A+ L+ +L
Sbjct: 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197
Query: 262 DSAIHYEAVGVIGNLVHSSPNI 283
D + A G + NL + N+
Sbjct: 198 D--LSTLACGYLRNLTWTLSNL 217
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF-----------RDLVIKHGAI 206
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 207 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 323
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ +A+A+ TV
Sbjct: 384 GVLSKADFKTQKAAAWAITNYTSGGTV 410
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L D S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 172
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GA+ PL+ +L PD +S A G L
Sbjct: 173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 226
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 178
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + + V+ GA+ P++ LL+
Sbjct: 179 SEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 174
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 175 HAHISEQAVWALGNIA 190
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 34/206 (16%)
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142
AT L E N+ VNW VE +VK + N E +++ A A L
Sbjct: 60 ATSPLQENRNNQGTVNWSVED-----IVKGI----------NSNNLESQLQATQA-ARKL 103
Query: 143 LAVKPEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198
L+ +Q +DN G + V+ L + ++CS + +A A+TN+A +S
Sbjct: 104 LS---REKQPPIDNIIRAGLIPKFVSFLGK---TDCS----PIQFESAWALTNIA-SGTS 152
Query: 199 IKTRVRMEGG-IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257
+T+ ++GG IP + LL + A AL +A ++ +++ A+ L+ +
Sbjct: 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212
Query: 258 LRSEDSAIHYEAVGVIGNLVHSSPNI 283
L D + A G + NL + N+
Sbjct: 213 LAVPD--LSTLACGYLRNLTWTLSNL 236
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL-GLLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 331 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 378
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 379 VPFLVGVL--------SKADFKTQKAAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 429
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 430 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 488
Query: 270 VGVI 273
+ +I
Sbjct: 489 LNLI 492
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 9/197 (4%)
Query: 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207
E Q ++D GAL LV LL S +++ A A++N+A + V G
Sbjct: 45 EQIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267
+P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216
Query: 328 HIVQRGAVRPLIEMLQS 344
+ + GA+ L E LQS
Sbjct: 217 AVKEAGALEKL-EQLQS 232
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 90 LAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH 149
L+ E + +++ GA+PALV+ L +P ++ + + +AL +A
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNE 87
Query: 150 Q-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208
Q Q ++D GAL LV LL S +++ A A++N+A + V G
Sbjct: 88 QIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I E
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311
A+ + N+ K+ V AGAL+ + L S + Q+EA
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 82/155 (52%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
++ GA+ L+++L SP+ Q+ + + +AL +A
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 8/176 (4%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ--------VITVSVLPAILIFI 376
++ GA+ L+++L SP+ Q+ + + +AL +A VI LPA++ +
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GS F + L++ GA+
Sbjct: 90 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF-----------RDLVIKYGAV 138
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 139 DPLLALLAV---PDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHD 195
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 196 DPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTG 255
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ + V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 256 TDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 315
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
+L D + ++ + +A+ TV
Sbjct: 316 SVLSKADFKTQKEAVWAVTNYTSGGTV 342
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+ I+ +P + L R++ S I +E+ + N+ + K V+ GA+ I LL+
Sbjct: 45 DNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 104
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
S + +A LG A S + +++ GAV PL+ +L PD MS+ A G L
Sbjct: 105 SPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPD-----MSSLACGYL 158
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 51 GLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 110
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 111 SEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLA 146
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
++ AG + + L + CS Q E+A L A+ S+ +V GA+ I +L SP
Sbjct: 47 IIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 106
Query: 346 DVQLREMSAFALGRLA 361
+ E + +ALG +A
Sbjct: 107 HAHISEQAVWALGNIA 122
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 14/178 (7%)
Query: 129 EHEVEKGSAFALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187
+ EV + +A+ L P E ++V G + LV LL + ++ A
Sbjct: 196 DPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLL--------GASELPIVTPALR 247
Query: 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247
AI N+ V G + LL T +Q+ A + + + Q+V
Sbjct: 248 AIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---AGALQPVIGLLSS 302
+P L+ +L D EAV + N ++S ++++ G ++P++ LL++
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTN--YTSGGTVEQIVYLVHCGIIEPLMNLLTA 363
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L R ++CS + +A A+TN+A +S +T+ ++GG IP
Sbjct: 47 IIRAGLIPKFVSFLGR---TDCS----PIQFESAWALTNIA-SGTSEQTKAVVDGGAIPA 98
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
+ LL + A AL +A ++ +++ A+ L+ +L D + A G
Sbjct: 99 FISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPD--MSSLACG 156
Query: 272 VIGNLVHSSPNI 283
+ NL + N+
Sbjct: 157 YLRNLTWTLSNL 168
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 52/308 (16%)
Query: 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
AA T++ + ++N +VV ++ GAVP VK L S +D +V + + +
Sbjct: 138 AAWALTNIASGTSENTKVV---IDHGAVPIFVKLL----GSSSD--------DVREQAVW 182
Query: 139 ALGLLAV-KPEHQQLIVDNGALSHLVNLLKRH----MDSNCSRAVNSV-----------I 182
ALG +A P+ + L++ NGAL L+ L H M N + +++
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 183 RRAADAITNLAHEN------------------SSIKTRVRMEGGI-PPLVELLEFTDTKV 223
R A A+ L H N ++ K + +E G+ P LVELL V
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPN 282
A + + +D I++ ALP L+ L+ ++ +I EA I N+ + +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEM 341
+ V+ AG + P++ LL + + ++EAA + + S ++ ++V G ++PL ++
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422
Query: 342 LQSPDVQL 349
L PD+++
Sbjct: 423 LICPDIRI 430
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 250
L+ E S V G +P V+ L D ++Q AA AL +A EN +++ A
Sbjct: 102 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161
Query: 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 309
+P + +L S + +AV +GN+ SP + VLA GAL P++ L+ S R
Sbjct: 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
A L F R A+ L ++ S D ++ + +AL L+
Sbjct: 222 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLS 272
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 52/308 (16%)
Query: 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
AA T++ + ++N +VV ++ GAVP VK L S +D +V + + +
Sbjct: 100 AAWALTNIASGTSENTKVV---IDHGAVPIFVKLL----GSSSD--------DVREQAVW 144
Query: 139 ALGLLAV-KPEHQQLIVDNGALSHLVNLLKRH----MDSNCSRAVNSVIRR--------- 184
ALG +A P+ + L++ NGAL L+ L H M N + +++ R
Sbjct: 145 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 204
Query: 185 --AADAITNLAHEN------------------SSIKTRVRMEGGIPP-LVELLEFTDTKV 223
A A+ L H N ++ K + +E G+ P LVELL V
Sbjct: 205 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 264
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPN 282
A + + +D I++ ALP L+ L+ ++ +I EA I N+ + +
Sbjct: 265 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 324
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEM 341
+ V+ AG + P++ LL + + ++EAA + + S ++ ++V G ++PL ++
Sbjct: 325 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 384
Query: 342 LQSPDVQL 349
L PD+++
Sbjct: 385 LICPDIRI 392
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 250
L+ E S V G +P V+ L D ++Q AA AL +A EN +++ A
Sbjct: 64 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 309
+P + +L S + +AV +GN+ SP + VLA GAL P++ L+ S R
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
A L F R A+ L ++ S D ++ + +AL L+
Sbjct: 184 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLS 234
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHL 162
G +P +V+ L +P E L+ G+ E Q ++D GAL L
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-----------EQIQAVIDAGALPAL 59
Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
V LL S +++ A A++N+A + V G +P LV+LL + +
Sbjct: 60 VQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
+ + A AL +A +E +++ ALP L+ +L S + I EA+ + N+
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREA 311
K+ V AGAL+ + L S + Q+EA
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 79/153 (51%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
++ GA+ L+++L SP+ Q+ + + +AL +A
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQS 344
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQA 115
SE+ V LN+ D+ + A L+++A E + +++ GA+PALV+ L +
Sbjct: 12 SELPQMVQQLNSP------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 116 PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNC 174
P ++ + + +AL +A Q Q ++D GAL LV LL
Sbjct: 66 P------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-------- 105
Query: 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
S +++ A A++N+A + V G +P LV+LL + ++ + A AL +
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269
A +E K + E AL L + E+ I EA
Sbjct: 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLI 153
E + +++ GA+PALV+ L +P ++ + + +AL +A Q Q +
Sbjct: 87 EQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNEQIQAV 134
Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213
+D GAL LV LL S +++ A A++N+A + K V+ G + L
Sbjct: 135 IDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 214 ELLEFTDTKVQRAAAGALRTL 234
+L + K+Q+ A AL L
Sbjct: 187 QLQSHENEKIQKEAQEALEKL 207
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHL 162
G +P +V+ L +P E L+ G+ E Q ++D GAL L
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-----------EQIQAVIDAGALPAL 59
Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
V LL S +++ A A++N+A + V G +P LV+LL + +
Sbjct: 60 VQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
+ + A AL +A +E +++ ALP L+ +L S + I EA+ + N+
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 283 IKKEVLAAGALQPVIGLLSSCCSES-QREA 311
K+ V AGA +P + L S +E Q+EA
Sbjct: 172 QKQAVKEAGA-EPALEQLQSSPNEKIQKEA 200
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRL 360
+ + GA P +E LQ SP+ ++++ + AL ++
Sbjct: 174 QAVKEAGA-EPALEQLQSSPNEKIQKEAQEALEKI 207
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 79/153 (51%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
++ GA+ L+++L SP+ Q+ + + +AL +A
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQA 115
SE+ V LN+ D+ + A L+++A E + +++ GA+PALV+ L +
Sbjct: 12 SELPQMVQQLNSP------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 116 PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNC 174
P ++ + + +AL +A Q Q ++D GAL LV LL
Sbjct: 66 P------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-------- 105
Query: 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
S +++ A A++N+A + V G +P LV+LL + ++ + A AL +
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269
A +E K + E A P L + S + I EA
Sbjct: 166 ASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEA 200
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLI 153
E + +++ GA+PALV+ L +P ++ + + +AL +A Q Q +
Sbjct: 87 EQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNEQIQAV 134
Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213
+D GAL LV LL S +++ A A++N+A + K V+ G P L
Sbjct: 135 IDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALE 186
Query: 214 ELLEFTDTKVQRAAAGALRTL 234
+L + K+Q+ A AL +
Sbjct: 187 QLQSSPNEKIQKEAQEALEKI 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
+L+ E Q ++D GAL LV LL S +++ A A++N+A +
Sbjct: 39 ILSDGNEQIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
V G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150
Query: 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311
+ I EA+ + N+ K+ V AGAL+ + L S + Q+EA
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQS 344
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
++ GA+ L+++L SP+ Q+ + + +AL +A
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 90 LAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH 149
L+ E + +++ GA+PALV+ L +P ++ + + +AL +A
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNE 87
Query: 150 Q-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208
Q Q ++D GAL LV LL S +++ A A++N+A + V G
Sbjct: 88 QIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P LV+LL + ++ + A AL +A +E K + E AL L + E+ I E
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 269 A 269
A
Sbjct: 200 A 200
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLI 153
E + +++ GA+PALV+ L +P ++ + + +AL +A Q Q +
Sbjct: 87 EQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNEQIQAV 134
Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213
+D GAL LV LL S +++ A A++N+A + K V+ G + L
Sbjct: 135 IDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 214 ELLEFTDTKVQRAAAGALRTL 234
+L + K+Q+ A AL L
Sbjct: 187 QLQSHENEKIQKEAQEALEKL 207
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237
+++V AA + +L + N +KT VR GIP LV LL+ +V A GAL+ ++F
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 238 ND-ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288
D +NK I C+ +P L+ +LR + D + G + NL S +IK E++
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV 172
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P ++ +L F V+ AA L+ L ++ND+ K + + +P L+ +L +H
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 269 AVGVIGNL 276
A G + N+
Sbjct: 110 ACGALKNI 117
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 180 SVIRRAADAITNLAHENSS----IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235
+++ +A AI NL + I++ +R E + + +LL +V +AA+GALR LA
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383
Query: 236 FKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
D +++ +A+P L+ L ++S+ ++ VI L + I + + AA L
Sbjct: 384 V--DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441
Query: 294 QPVIG-----LLSSCCSESQRE---AALLL 315
+ G L++ + S++E AAL+L
Sbjct: 442 RETQGIEKLVLINKSGNRSEKEVRAAALVL 471
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 14/218 (6%)
Query: 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206
P ++I G ++ V LKR NC+ S A +TN+A NS ++TR+ ++
Sbjct: 54 PPIDEVISTPGVVARFVEFLKRK--ENCTLQFES-----AWVLTNIASGNS-LQTRIVIQ 105
Query: 207 GG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263
G +P +ELL EF D VQ A AL +A + ++ +++CN LP L+ + ++
Sbjct: 106 AGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 163
Query: 264 -AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
+ AV + NL + + L + LL ++ +A L +
Sbjct: 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223
Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
+D ++ G R L+E+L D ++ + A+G +
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
+ R E+ + +E+ V+ N+ + + V+ AGA+ I LLSS + Q +A L
Sbjct: 72 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 131
Query: 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQ 362
G A + C+ +++ + PL+++ + + + + +AL L +
Sbjct: 132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 24/261 (9%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH-QQLIVDNGA 158
+++ GAVP ++ L +SE FE +V++ + +ALG +A + ++D
Sbjct: 103 VIQAGAVPIFIELL----SSE-------FE-DVQEQAVWALGNIAGDSTMCRDYVLDCNI 150
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
L L+ L + +R ++ R A A++NL S ++ + L LL
Sbjct: 151 LPPLLQLFSKQ-----NRL--TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 203
Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
+DT V A AL L+ ++ +++ L+ +L D + A+ +GN+V
Sbjct: 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV- 262
Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRP 337
+ +I+ +V+ + + L S ES ++EA + A + ++ V + P
Sbjct: 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR-AQIQTVIDANIFP 321
Query: 338 -LIEMLQSPDVQLREMSAFAL 357
LI +LQ+ + + R+ +A+A+
Sbjct: 322 ALISILQTAEFRTRKEAAWAI 342
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 14/218 (6%)
Query: 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206
P ++I G ++ V LKR NC+ S A +TN+A NS ++TR+ ++
Sbjct: 51 PPIDEVISTPGVVARFVEFLKRK--ENCTLQFES-----AWVLTNIASGNS-LQTRIVIQ 102
Query: 207 GG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263
G +P +ELL EF D VQ A AL +A + ++ +++CN LP L+ + ++
Sbjct: 103 AGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 160
Query: 264 -AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
+ AV + NL + + L + LL ++ +A L +
Sbjct: 161 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 220
Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
+D ++ G R L+E+L D ++ + A+G +
Sbjct: 221 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 258
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
+ R E+ + +E+ V+ N+ + + V+ AGA+ I LLSS + Q +A L
Sbjct: 69 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 128
Query: 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQ 362
G A + C+ +++ + PL+++ + + + + +AL L +
Sbjct: 129 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 176
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 24/261 (9%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH-QQLIVDNGA 158
+++ GAVP ++ L +SE FE +V++ + +ALG +A + ++D
Sbjct: 100 VIQAGAVPIFIELL----SSE-------FE-DVQEQAVWALGNIAGDSTMCRDYVLDCNI 147
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
L L+ L + +R ++ R A A++NL S ++ + L LL
Sbjct: 148 LPPLLQLFSKQ-----NRL--TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 200
Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
+DT V A AL L+ ++ +++ L+ +L D + A+ +GN+V
Sbjct: 201 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV- 259
Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRP 337
+ +I+ +V+ + + L S ES ++EA + A + ++ V + P
Sbjct: 260 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR-AQIQTVIDANIFP 318
Query: 338 -LIEMLQSPDVQLREMSAFAL 357
LI +LQ+ + + R+ +A+A+
Sbjct: 319 ALISILQTAEFRTRKEAAWAI 339
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
A I + ++ S K +V GGI LV+LL + VQ+AAAGALR L F++ NK +
Sbjct: 22 GAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81
Query: 245 IVECNALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297
N + + +LR +A I + G++ NL SS + KE L A AL PV+
Sbjct: 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL--SSTDELKEELIADAL-PVL 132
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
IP V+ L D K Q A ++ F+++ K Q+ + + L+ +LRS + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATD 322
A G + NLV S K E ++ + LL + +E Q++ LL ++TD
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLA---FKNDENKNQIV-ECNALPTLILMLRSE 261
E G+P + LL+ ++ V R+ A L ++ + NQ+ E L T S
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
I A + NL+ S P + K+ ++ L +I L S S EAA LL
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+A+ +GN+ S + + VL A++P++GL +S
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 139
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 101 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 152
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 153 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 212
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 213 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 272
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 273 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAI 320
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 64 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 122
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 123 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
+E+ +A + + + ++ + L+E+L Q+P LR +
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 240
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
G Q VI VLPA+ + +
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLL 263
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+A+ +GN+ S + + VL A++P++GL +S
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 140
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 102 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 153
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 154 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 213
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 214 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 273
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 274 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAI 321
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 65 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 124 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
+E+ +A + + + ++ + L+E+L Q+P LR +
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 241
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
G Q VI VLPA+ + +
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLL 264
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+A+ +GN+ S + + VL A++P++GL +S
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 140
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 102 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 153
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 154 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 213
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 214 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 273
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 274 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAI 321
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 65 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 124 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
+E+ +A + + + ++ + L+E+L Q+P LR +
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 241
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
G Q VI VLPA+ + +
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLL 264
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+A+ +GN+ S + + VL A++P++GL +S
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 139
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 112/259 (43%), Gaps = 21/259 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KPEHQQLIVDNGA 158
+V+ AVP ++ L EV++ + +ALG +A +++ ++ A
Sbjct: 82 VVDADAVPLFIQLLYTGSV------------EVKEQAIWALGNVAGDSTDYRDYVLQCNA 129
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
+ ++ L + S +IR A ++NL + +P L +L+
Sbjct: 130 MEPILGLFNSNKPS--------LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 181
Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
DT+ A A+ L+ E +++ L+ +L E + + A+ +GN+V
Sbjct: 182 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 241
Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338
+ + V+ AG L + LLSS ++EA + A +++ ++ + PL
Sbjct: 242 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 339 IEMLQSPDVQLREMSAFAL 357
+++L+ + + ++ + +A+
Sbjct: 302 VKLLEVAEDKTKKEACWAI 320
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 64 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 122
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 123 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
+E+ +A + + + ++ + L+E+L Q+P LR +
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 240
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
G Q VI VLPA+ + +
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLL 263
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+A+ +GN+ S + + VL A++P++GL +S
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 226
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 112/259 (43%), Gaps = 21/259 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGA 158
+V+ AVP ++ L EV++ + +ALG +A +++ ++ A
Sbjct: 169 VVDADAVPLFIQLLYTGSV------------EVKEQAIWALGNVAGDSTDYRDYVLQCNA 216
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
+ ++ L + S +IR A ++NL + +P L +L+
Sbjct: 217 MEPILGLFNSNKPS--------LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 268
Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
DT+ A A+ L+ E +++ L+ +L E + + A+ +GN+V
Sbjct: 269 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328
Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338
+ + V+ AG L + LLSS ++EA + A +++ ++ + PL
Sbjct: 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 339 IEMLQSPDVQLREMSAFAL 357
+++L+ + + ++ + +A+
Sbjct: 389 VKLLEVAEYKTKKEACWAI 407
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 151 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
+E+ +A + + + ++ + L+E+L Q+P LR +
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 327
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
G Q VI VLPA+ + +
Sbjct: 328 TGNDLQTQVVINAGVLPALRLLL 350
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+A+ +GN+ S + + VL A++P++GL +S
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 138
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 100 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 151
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 152 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 211
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 212 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 271
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 272 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 319
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 63 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 122 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
+E+ +A + + + ++ + L+E+L Q+P LR +
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 239
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
G Q VI VLPA+ + +
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLL 262
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+A+ +GN+ S + + VL A++P++GL +S
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 138
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 100 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 151
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 152 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 211
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 212 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 271
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 272 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 319
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 63 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 122 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
+E+ +A + + + ++ + L+E+L Q+P LR +
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 239
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
G Q VI VLPA+ + +
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLL 262
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239
S I AA I + + S + RV GI L++LL+ + VQRA GALR L F+++
Sbjct: 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 240 ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
+NK ++ E N +P L+ +L+ + D + G++ NL SS + K ++ AL
Sbjct: 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSNDKLKNLMITEAL 137
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGG-AVPALVKHLQAPPTSEADRNLKPFEHEV 132
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220
Query: 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
S GLLA I +G + LVN+L V+SV+ A + NL
Sbjct: 221 ---SHHREGLLA--------IFKSGGIPALVNML--------GSPVDSVLFHAITTLHNL 261
Query: 193 AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 321
Query: 253 TLILMLRS 260
L+ ++R+
Sbjct: 322 ALVNIMRT 329
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 40/180 (22%)
Query: 189 ITNLAHENSSIK-------TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241
I NL ++ ++ ++ E + PL++ L+ D V+RAAA AL
Sbjct: 25 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL---------- 74
Query: 242 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
QI + A+ LI L+ ED + A +G + A++P+I L
Sbjct: 75 -GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-----------AVEPLIKALK 122
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
+ AA LG+ I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 123 DEDWFVRIAAAFALGE-----------IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
V+RAAA AL +I + A+ LI L+ ED+ + A +G +
Sbjct: 35 VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 82 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 343 QSPDVQLREMSAFALGRLAQVITVSVL 369
+ D +R +AFALG + V L
Sbjct: 122 KDEDWFVRIAAAFALGEIGDERAVEPL 148
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 40/180 (22%)
Query: 189 ITNLAHENSSIK-------TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241
I NL ++ ++ ++ E + PL++ L+ D V+RAAA AL
Sbjct: 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL---------- 69
Query: 242 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
QI + A+ LI L+ ED + A +G + A++P+I L
Sbjct: 70 -GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-----------AVEPLIKALK 117
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
+ AA LG+ I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 118 DEDWFVRIAAAFALGE-----------IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 37/156 (23%)
Query: 210 PPLVEL----LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
P VE+ L+ V+RAAA AL +I + A+ LI L+ ED+ +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWV 61
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
A +G + A++P+I L ++ AA+ LGQ
Sbjct: 62 RRAAADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQ-------- 102
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
I AV PLI+ L+ D +R +AFALG +
Sbjct: 103 ---IGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 135
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 13 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 72
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 73 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 109
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 110 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 169
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 170 GGPQALVNIMRT 181
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 249 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 307
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 51/314 (16%)
Query: 19 RKLDEET-VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLE 74
R + E T ++ DE Q + + +R A++ VSA V + T
Sbjct: 2 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT----- 56
Query: 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPF 128
D A+ L L+ + E + I + G +PALVK L +P S NL
Sbjct: 57 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 116
Query: 129 EHEVEKGSAFALGL--------------LAVKP-----------EHQQLIVDNGALSHLV 163
+ + A GL LA+ E + +I+ +G LV
Sbjct: 117 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 176
Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
N+++ + + V++ + SS K + GG+ L L TD
Sbjct: 177 NIMRTYTYEKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS- 225
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283
QR L TL +D Q L TL+ +L S+D + A G++ NL ++
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 285
Query: 284 KKEVLAAGALQPVI 297
K V G ++ ++
Sbjct: 286 KMMVCQVGGIEALV 299
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 32 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 91
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 92 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 128
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 129 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 188
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 189 GGPQALVNIMRT 200
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 268 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 326
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 50/306 (16%)
Query: 26 VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKR 82
++ DE Q + + +R A++ VSA V + T D A+
Sbjct: 29 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARC 83
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPFEHEVEKGS 136
L L+ + E + I + G +PALVK L +P S NL + +
Sbjct: 84 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 143
Query: 137 AFALGL--------------LAVKP-----------EHQQLIVDNGALSHLVNLLKRHMD 171
A GL LA+ E + +I+ +G LVN+++ +
Sbjct: 144 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 203
Query: 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231
+ V++ + SS K + GG+ L L TD QR L
Sbjct: 204 EKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS-QRLVQNCL 252
Query: 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
TL +D Q L TL+ +L S+D + A G++ NL ++ K V G
Sbjct: 253 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 312
Query: 292 ALQPVI 297
++ ++
Sbjct: 313 GIEALV 318
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 15 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 74
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 75 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 111
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 112 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 171
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 172 GGPQALVNIMRT 183
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 251 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 309
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 51/314 (16%)
Query: 19 RKLDEET-VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLE 74
R + E T ++ DE Q + + +R A++ VSA V + T
Sbjct: 4 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT----- 58
Query: 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPF 128
D A+ L L+ + E + I + G +PALVK L +P S NL
Sbjct: 59 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 118
Query: 129 EHEVEKGSAFALGL--------------LAVKP-----------EHQQLIVDNGALSHLV 163
+ + A GL LA+ E + +I+ +G LV
Sbjct: 119 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 178
Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
N+++ + + V++ + SS K + GG+ L L TD
Sbjct: 179 NIMRTYTYEKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS- 227
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283
QR L TL +D Q L TL+ +L S+D + A G++ NL ++
Sbjct: 228 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 287
Query: 284 KKEVLAAGALQPVI 297
K V G ++ ++
Sbjct: 288 KMMVCQVGGIEALV 301
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 13 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 72
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 73 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 109
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 110 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 169
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 170 GGPQALVNIMRT 181
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 249 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 307
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 51/314 (16%)
Query: 19 RKLDEET-VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLE 74
R + E T ++ DE Q + + +R A++ VSA V + T
Sbjct: 2 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT----- 56
Query: 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPF 128
D A+ L L+ + E + I + G +PALVK L +P S NL
Sbjct: 57 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 116
Query: 129 EHEVEKGSAFALGL--------------LAVKP-----------EHQQLIVDNGALSHLV 163
+ + A GL LA+ E + +I+ +G LV
Sbjct: 117 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 176
Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
N+++ + + V++ + SS K + GG+ L L TD
Sbjct: 177 NIMRTYTYEKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS- 225
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283
QR L TL +D Q L TL+ +L S+D + A G++ NL ++
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 285
Query: 284 KKEVLAAGALQPVI 297
K V G ++ ++
Sbjct: 286 KMMVCQVGGIEALV 299
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 88 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 124
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 185 GGPQALVNIMRT 196
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 51/314 (16%)
Query: 19 RKLDEET-VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLE 74
R + E T ++ DE Q + + +R A++ VSA V + T
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT----- 71
Query: 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPF 128
D A+ L L+ + E + I + G +PALVK L +P S NL
Sbjct: 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 129 EHEVEKGSAFALGL--------------LAVKP-----------EHQQLIVDNGALSHLV 163
+ + A GL LA+ E + +I+ +G LV
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
N+++ + + V++ + SS K + GG+ L L TD
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS- 240
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283
QR L TL +D Q L TL+ +L S+D + A G++ NL ++
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300
Query: 284 KKEVLAAGALQPVI 297
K V G ++ ++
Sbjct: 301 KMMVCQVGGIEALV 314
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 26 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 85
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 86 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 122
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 123 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 182
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 183 GGPQALVNIMRT 194
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 262 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 320
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 50/306 (16%)
Query: 26 VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKR 82
++ DE Q + + +R A++ VSA V + T D A+
Sbjct: 23 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARC 77
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPFEHEVEKGS 136
L L+ + E + I + G +PALVK L +P S NL + +
Sbjct: 78 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 137 AFALGL--------------LAVKP-----------EHQQLIVDNGALSHLVNLLKRHMD 171
A GL LA+ E + +I+ +G LVN+++ +
Sbjct: 138 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 197
Query: 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231
+ V++ + SS K + GG+ L L TD QR L
Sbjct: 198 EKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS-QRLVQNCL 246
Query: 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
TL +D Q L TL+ +L S+D + A G++ NL ++ K V G
Sbjct: 247 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 306
Query: 292 ALQPVI 297
++ ++
Sbjct: 307 GIEALV 312
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 17 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 76
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 77 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 113
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 114 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 173
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 174 GGPQALVNIMRT 185
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 253 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 311
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 117/314 (37%), Gaps = 51/314 (16%)
Query: 19 RKLDEET-VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLE 74
R + E T ++ DE Q + + +R A++ VSA V + T
Sbjct: 6 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT----- 60
Query: 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPF 128
D A+ L L+ + E + I + G +PALVK L +P S NL
Sbjct: 61 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 120
Query: 129 EHEVEKGSAFALGL--------------LAVKP-----------EHQQLIVDNGALSHLV 163
+ + A GL LA+ E + +I+ +G LV
Sbjct: 121 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 180
Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
N+++ + + V++ + SS K + GG+ L L TD
Sbjct: 181 NIMRTYTYEKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS- 229
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283
QR L TL +D Q L TL+ +L S+D + A G++ NL ++
Sbjct: 230 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 289
Query: 284 KKEVLAAGALQPVI 297
K V G ++ ++
Sbjct: 290 KMMVCQVGGIEALV 303
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 30 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 89
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 90 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 126
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 127 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 186
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 187 GGPQALVNIMRT 198
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 266 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 324
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 31 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 90
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 91 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 127
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 128 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 187
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 188 GGPQALVNIMRT 199
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 267 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 325
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 50/306 (16%)
Query: 26 VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKR 82
++ DE Q + + +R A++ VSA V + T D A+
Sbjct: 28 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARC 82
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPFEHEVEKGS 136
L L+ + E + I + G +PALVK L +P S NL + +
Sbjct: 83 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 142
Query: 137 AFALGL--------------LAVKP-----------EHQQLIVDNGALSHLVNLLKRHMD 171
A GL LA+ E + +I+ +G LVN+++ +
Sbjct: 143 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 202
Query: 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231
+ V++ + SS K + GG+ L L TD QR L
Sbjct: 203 EKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS-QRLVQNCL 251
Query: 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
TL +D Q L TL+ +L S+D + A G++ NL ++ K V G
Sbjct: 252 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 311
Query: 292 ALQPVI 297
++ ++
Sbjct: 312 GIEALV 317
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 29 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 88
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 89 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 125
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 126 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 185
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 186 GGPQALVNIMRT 197
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 265 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 323
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 50/306 (16%)
Query: 26 VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKR 82
++ DE Q + + +R A++ VSA V + T D A+
Sbjct: 26 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARC 80
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPFEHEVEKGS 136
L L+ + E + I + G +PALVK L +P S NL + +
Sbjct: 81 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 140
Query: 137 AFALGL--------------LAVKP-----------EHQQLIVDNGALSHLVNLLKRHMD 171
A GL LA+ E + +I+ +G LVN+++ +
Sbjct: 141 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 200
Query: 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231
+ V++ + SS K + GG+ L L TD QR L
Sbjct: 201 EKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS-QRLVQNCL 249
Query: 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
TL +D Q L TL+ +L S+D + A G++ NL ++ K V G
Sbjct: 250 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 309
Query: 292 ALQPVI 297
++ ++
Sbjct: 310 GIEALV 315
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 30 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 89
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 90 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 126
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 127 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 186
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 187 GGPQALVNIMRT 198
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 266 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 324
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 50/306 (16%)
Query: 26 VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKR 82
++ DE Q + + +R A++ VSA V + T D A+
Sbjct: 27 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARC 81
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPFEHEVEKGS 136
L L+ + E + I + G +PALVK L +P S NL + +
Sbjct: 82 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 137 AFALGL--------------LAVKP-----------EHQQLIVDNGALSHLVNLLKRHMD 171
A GL LA+ E + +I+ +G LVN+++ +
Sbjct: 142 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 201
Query: 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231
+ V++ + SS K + GG+ L L TD QR L
Sbjct: 202 EKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS-QRLVQNCL 250
Query: 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
TL +D Q L TL+ +L S+D + A G++ NL ++ K V G
Sbjct: 251 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 310
Query: 292 ALQPVI 297
++ ++
Sbjct: 311 GIEALV 316
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 28/192 (14%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 26 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 85
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 86 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 122
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
+ NL K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 123 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 182
Query: 249 NALPTLILMLRS 260
L+ ++R+
Sbjct: 183 GGPQALVNIMRT 194
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 262 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 320
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 50/306 (16%)
Query: 26 VIGDEQQQMQQREIXXXXXXXXXXDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKR 82
++ DE Q + + +R A++ VSA V + T D A+
Sbjct: 23 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARC 77
Query: 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS------EADRNLKPFEHEVEKGS 136
L L+ + E + I + G +PALVK L +P S NL + +
Sbjct: 78 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 137 AFALGL--------------LAVKP-----------EHQQLIVDNGALSHLVNLLKRHMD 171
A GL LA+ E + +I+ +G LVN+++ +
Sbjct: 138 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 197
Query: 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231
+ V++ + SS K + GG+ L L TD QR L
Sbjct: 198 EKLLWTTSRVLKVLSVC--------SSNKPAIVEAGGMQALG--LHLTDPS-QRLVQNCL 246
Query: 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
TL +D Q L TL+ +L S+D + A G++ NL ++ K V G
Sbjct: 247 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 306
Query: 292 ALQPVI 297
++ ++
Sbjct: 307 GIEALV 312
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGG-AVPALVKHLQAPPTSEADRNLKPFEHEV 132
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84
Query: 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 85 ---SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNL 125
Query: 193 AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185
Query: 253 TLILMLRS 260
L+ ++R+
Sbjct: 186 ALVNIMRT 193
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 239
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR 87
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 300 LSSCCSESQREAALLLGQFAATDSDC 325
L+ +F A +DC
Sbjct: 148 LNKTNV-----------KFLAITTDC 162
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 28/168 (16%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 24 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 83
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 84 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 120
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
+ NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 121 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 168
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 239
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR 87
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 300 LSSCCSESQREAALLLGQFAATDSDC 325
L+ +F A +DC
Sbjct: 148 LNKTNV-----------KFLAITTDC 162
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 28/167 (16%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPF 128
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R L
Sbjct: 24 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 83
Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
H E GLLA I +G + LV +L V+SV+ A
Sbjct: 84 SHHRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITT 120
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235
+ NL K VR+ GG+ +V LL T+ K L+ LA
Sbjct: 121 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 167
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237
V+SV+ A + NL K VR+ GG+ V LL T+ K L+ LA+
Sbjct: 56 VDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYG 115
Query: 238 NDENKNQIVECNALPTLILMLRS 260
N E+K I+ L+ + R+
Sbjct: 116 NQESKLIILASGGPQALVNIXRT 138
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D + R AG L L+ + E I + +P L+ L S ++ + A+ + NL+
Sbjct: 15 DVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLH 73
Query: 280 SPNIKKEVLAAGALQPVIGLLS 301
K V AG LQ + LL+
Sbjct: 74 QEGAKXAVRLAGGLQKXVALLN 95
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 262
EG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 207 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGD 264
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212
I +G + LV +L S V SV+ A + NL K VR+ G+ +
Sbjct: 99 IFKSGGIPALVRML--------SSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKM 150
Query: 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV 272
V LL + K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 151 VPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSR 210
Query: 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+ ++ P+ K ++ AG +Q + L+S
Sbjct: 211 VLKVLSVCPSNKPAIVEAGGMQALGKHLTS 240
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 203 VRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRS 260
VR+ GIP +V+LL + + +A G +R LA N + E +P L+ L++++
Sbjct: 353 VRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALC-PANHAPLQEAAVIPRLVQLLVKA 411
Query: 261 EDSAIHYEAVG--------------VIG-----NLVHSSPNIKKEVLAAGALQPVIGLLS 301
A + A G V G +++ P + E+ + + LL
Sbjct: 412 HQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLY 471
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
S QR AA +L + A D + I GA PL+E+L S + +A L R++
Sbjct: 472 SSVENIQRVAAGVLCELA-QDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRIS 530
Query: 362 Q 362
+
Sbjct: 531 E 531
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 7/196 (3%)
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 239
V+ +AA + L+ + +S + + + +V ++ T D R L L+ +
Sbjct: 35 VVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSH-HR 93
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299
E I + +P L+ ML S ++ + A+ + NL+ K V A LQ ++ L
Sbjct: 94 EGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPL 153
Query: 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359
L+ + L A + + K+ I+ G + L++++++ E + R
Sbjct: 154 LNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSY---EKLLWTTSR 210
Query: 360 LAQVITV--SVLPAIL 373
+ +V++V S PAI+
Sbjct: 211 VLKVLSVCPSNKPAIV 226
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 195 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 254
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 255 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXG 314
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 315 AVSXLKNLIHS 325
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 257 LIATNEDHRQILRENNCLQTLLQHLKSHSL--------TIVSNACGTLWNLSARNPKDQE 308
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 309 ALWDXGAVSXLKNLIHSKHKXIAXGSAAALRNL 341
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 188 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 247
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 248 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 307
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 308 AVSMLKNLIHS 318
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 250 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 301
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 302 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 334
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXG 305
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 306 AVSXLKNLIHS 316
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSL--------TIVSNACGTLWNLSARNPKDQE 299
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 300 ALWDXGAVSXLKNLIHSKHKXIAXGSAAALRNL 332
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 306 AVSMLKNLIHS 316
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 299
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 300 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 306 AVSMLKNLIHS 316
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 299
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 300 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 362 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 422 AVSMLKNLIHS 432
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 415
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%)
Query: 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
A ++V +A AI+ L E + + G L+ ++ K++ +A L+ L
Sbjct: 121 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 180
Query: 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287
+ E+K + + L+ ++R+E S H +G + +LV P +E
Sbjct: 181 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 231
>pdb|3M0Z|A Chain A, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|B Chain B, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|C Chain C, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|D Chain D, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae
Length = 249
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 52 RQALLSEVSAQVNV--LNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL 109
+ A +SE+S QV +N F+ + RA L +NE VVN +V P
Sbjct: 79 QSAXVSEISRQVQPQHVNQVFTGVATSRAL----------LGQNETVVNGLVSPTGTPGX 128
Query: 110 VKHLQAPPTSEADRNLKPFE 129
VK P +S A + P E
Sbjct: 129 VKISTGPLSSGAADGIVPLE 148
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%)
Query: 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247
A+TNLA N S++ R+ E G+ + L + RAAA L L D K
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
+ + L L+ ED G + + S +++LA + ++ L
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%)
Query: 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
A ++V +A AI+ L E + + G L + K++ +A L+ L
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLXRAXQQQVQKLKVKSAFLLQNLLV 196
Query: 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287
+ E+K + + L+ ++R+E S H +G + +LV P +E
Sbjct: 197 GHPEHKGTLCSXGXVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLR 259
V ++ G PP E ++ A+ L+TL +K + K+ C P + ++
Sbjct: 246 VELKRGEPPRYERID--------ASPLPLKTLYYKKIDTSALKSIRDSCRNFPGYVRVVY 297
Query: 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEV 287
EDS I + +G I NLV ++E+
Sbjct: 298 EEDSGILPDLMGEIDNLVKIERKSRREI 325
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364
A+ LIE+++ P V +R+ +A+ +GR+ +++
Sbjct: 409 AMPTLIELMKDPSVVVRDTTAWTVGRICELL 439
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364
A+ LIE+++ P V +R+ +A+ +GR+ +++
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364
A+ LIE+++ P V +R+ +A+ +GR+ +++
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364
A+ LIE+++ P V +R+ +A+ +GR+ +++
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELL 314
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364
A+ LIE+++ P V +R+ +A+ +GR+ +++
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364
A+ LIE+++ P V +R+ +A+ +GR+ +++
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364
A+ LIE+++ P V +R+ +A+ +GR+ +++
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|2X9P|A Chain A, X-Ray Structure Of The Substrate-Free Cytochrome P450 Pimd
- A Polyene Macrolide Antibiotic Pimaricin Epoxidase
pdb|2XBK|A Chain A, X-Ray Structure Of The Substrate-Bound Cytochrome P450
Pimd - A Polyene Macrolide Antibiotic Pimaricin
Epoxidase
Length = 404
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV 163
G V LV+H +A P + L E ++ + A+GLL + I+DNG V
Sbjct: 200 GYVAGLVEHKRAEPGPDIISRLNDGELTEDRVAHLAMGLLFAGLDSVASIMDNG-----V 254
Query: 164 NLLKRHMDSNCSRAVN-SVIRRAADAITNLAHENSSI 199
LL H D + + V+ RA + + A S+
Sbjct: 255 VLLAAHPDQRAAALADPDVMARAVEEVLRTARAGGSV 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,661,423
Number of Sequences: 62578
Number of extensions: 336421
Number of successful extensions: 1476
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 298
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)