Query 015851
Match_columns 399
No_of_seqs 298 out of 2021
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 01:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 1.1E-39 2.3E-44 297.8 23.1 299 58-376 106-416 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 3.8E-37 8.2E-42 261.7 16.2 315 57-394 114-442 (526)
3 KOG0166 Karyopherin (importin) 100.0 2.4E-33 5.2E-38 256.3 25.1 287 60-367 151-441 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.8E-33 4E-38 239.3 17.4 285 59-365 155-446 (526)
5 PLN03200 cellulose synthase-in 100.0 1.2E-29 2.7E-34 264.2 35.7 309 60-381 188-578 (2102)
6 PLN03200 cellulose synthase-in 100.0 8.3E-29 1.8E-33 258.1 34.3 293 63-377 406-745 (2102)
7 KOG4224 Armadillo repeat prote 100.0 2.3E-28 4.9E-33 210.1 21.0 291 50-366 157-450 (550)
8 KOG4224 Armadillo repeat prote 100.0 5.9E-28 1.3E-32 207.5 17.9 271 74-367 137-410 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.1E-19 2.4E-24 176.1 30.5 314 50-394 279-603 (708)
10 KOG2122 Beta-catenin-binding p 99.9 6.2E-21 1.3E-25 188.0 16.6 278 81-366 316-605 (2195)
11 PF05804 KAP: Kinesin-associat 99.9 1.6E-18 3.4E-23 168.1 31.1 282 59-366 329-653 (708)
12 KOG4199 Uncharacterized conser 99.8 3.2E-16 6.9E-21 134.3 26.5 283 63-366 147-448 (461)
13 KOG4199 Uncharacterized conser 99.8 2.9E-15 6.3E-20 128.5 29.1 271 74-367 118-408 (461)
14 KOG2122 Beta-catenin-binding p 99.7 2.1E-16 4.6E-21 156.6 18.7 286 81-366 212-563 (2195)
15 PF04826 Arm_2: Armadillo-like 99.7 2.8E-15 6.1E-20 129.4 20.7 197 58-279 9-206 (254)
16 KOG1048 Neural adherens juncti 99.7 7.8E-15 1.7E-19 139.6 19.7 281 75-376 245-615 (717)
17 KOG4500 Rho/Rac GTPase guanine 99.6 4.8E-14 1E-18 124.9 20.7 293 76-384 55-419 (604)
18 PF04826 Arm_2: Armadillo-like 99.6 1.8E-13 3.9E-18 118.3 19.9 194 101-320 9-205 (254)
19 PF10508 Proteasom_PSMB: Prote 99.6 2.6E-12 5.6E-17 123.5 28.7 282 59-365 75-369 (503)
20 KOG1048 Neural adherens juncti 99.6 2.5E-13 5.3E-18 129.5 20.2 287 62-364 276-686 (717)
21 cd00020 ARM Armadillo/beta-cat 99.6 1.9E-13 4.1E-18 106.0 14.7 119 244-362 2-120 (120)
22 PF10508 Proteasom_PSMB: Prote 99.6 5.5E-12 1.2E-16 121.3 27.5 266 76-366 51-323 (503)
23 cd00020 ARM Armadillo/beta-cat 99.5 2.3E-13 5E-18 105.5 14.7 118 203-320 3-120 (120)
24 PRK09687 putative lyase; Provi 99.5 1.7E-12 3.7E-17 114.8 21.7 243 58-377 20-262 (280)
25 KOG4500 Rho/Rac GTPase guanine 99.5 9.1E-12 2E-16 110.6 20.9 291 60-361 86-430 (604)
26 KOG1222 Kinesin associated pro 99.5 7.7E-11 1.7E-15 106.2 24.9 287 60-366 344-667 (791)
27 KOG0168 Putative ubiquitin fus 99.4 7.9E-12 1.7E-16 119.3 18.2 245 76-343 181-436 (1051)
28 KOG2160 Armadillo/beta-catenin 99.4 4.1E-11 8.9E-16 105.2 20.0 188 72-278 92-282 (342)
29 PRK09687 putative lyase; Provi 99.4 4.2E-11 9.1E-16 106.0 19.0 212 104-379 23-235 (280)
30 cd00256 VATPase_H VATPase_H, r 99.4 2.9E-10 6.3E-15 104.7 23.4 271 74-363 112-426 (429)
31 KOG2171 Karyopherin (importin) 99.3 1.1E-09 2.3E-14 108.9 26.6 304 49-370 194-512 (1075)
32 KOG2171 Karyopherin (importin) 99.3 5.1E-10 1.1E-14 111.1 23.8 315 58-397 115-460 (1075)
33 KOG1222 Kinesin associated pro 99.3 7.6E-10 1.7E-14 99.9 22.4 306 56-393 299-616 (791)
34 KOG2160 Armadillo/beta-catenin 99.3 6.1E-10 1.3E-14 97.9 19.3 183 130-320 97-282 (342)
35 PRK13800 putative oxidoreducta 99.3 2.2E-09 4.9E-14 110.7 24.9 257 61-392 621-893 (897)
36 KOG2023 Nuclear transport rece 99.2 9.2E-10 2E-14 103.0 17.4 307 57-396 124-503 (885)
37 KOG2759 Vacuolar H+-ATPase V1 99.2 3.6E-09 7.9E-14 94.3 20.2 268 74-363 125-439 (442)
38 KOG1293 Proteins containing ar 99.2 5.6E-09 1.2E-13 97.9 20.8 322 57-398 47-533 (678)
39 cd00256 VATPase_H VATPase_H, r 99.2 8.6E-09 1.9E-13 95.2 21.7 226 77-320 158-425 (429)
40 KOG3678 SARM protein (with ste 99.1 5.9E-09 1.3E-13 94.0 19.0 253 95-367 171-457 (832)
41 PRK13800 putative oxidoreducta 99.1 1.1E-08 2.3E-13 105.8 23.0 229 60-359 651-896 (897)
42 PF03224 V-ATPase_H_N: V-ATPas 99.1 4.3E-09 9.2E-14 95.5 17.2 212 131-353 72-305 (312)
43 PF03224 V-ATPase_H_N: V-ATPas 99.1 2.3E-09 5E-14 97.3 15.1 204 158-371 56-278 (312)
44 KOG1517 Guanine nucleotide bin 99.1 9E-09 2E-13 100.9 17.8 247 60-327 471-739 (1387)
45 KOG0168 Putative ubiquitin fus 99.1 1.7E-08 3.8E-13 97.0 19.3 216 58-297 208-432 (1051)
46 PF01602 Adaptin_N: Adaptin N 99.0 3.5E-08 7.5E-13 96.9 18.6 247 73-365 89-336 (526)
47 KOG2759 Vacuolar H+-ATPase V1 99.0 6.5E-08 1.4E-12 86.5 18.0 228 75-320 169-438 (442)
48 KOG1293 Proteins containing ar 99.0 4.3E-08 9.3E-13 92.1 17.4 148 218-365 388-536 (678)
49 KOG0946 ER-Golgi vesicle-tethe 98.9 1E-07 2.2E-12 91.2 19.0 204 131-343 38-264 (970)
50 KOG2023 Nuclear transport rece 98.9 4.7E-08 1E-12 91.8 14.9 283 60-374 173-517 (885)
51 PF01602 Adaptin_N: Adaptin N 98.9 1.4E-07 3.1E-12 92.6 18.6 247 74-366 53-300 (526)
52 KOG1241 Karyopherin (importin) 98.9 1.7E-07 3.6E-12 89.5 17.6 304 34-363 146-478 (859)
53 KOG1517 Guanine nucleotide bin 98.8 2.4E-07 5.1E-12 91.3 18.0 228 132-367 486-737 (1387)
54 KOG0946 ER-Golgi vesicle-tethe 98.8 4.4E-06 9.6E-11 80.4 25.6 286 62-367 62-404 (970)
55 PTZ00429 beta-adaptin; Provisi 98.8 4.2E-06 9.2E-11 83.4 26.1 257 63-366 142-401 (746)
56 KOG1241 Karyopherin (importin) 98.8 6.1E-07 1.3E-11 85.8 19.0 287 57-367 125-440 (859)
57 KOG4646 Uncharacterized conser 98.7 1.7E-07 3.7E-12 70.5 9.5 134 157-299 16-149 (173)
58 KOG4646 Uncharacterized conser 98.6 8.4E-07 1.8E-11 66.8 10.4 118 131-257 32-149 (173)
59 KOG2973 Uncharacterized conser 98.6 2.7E-05 6E-10 67.2 20.9 266 73-365 13-318 (353)
60 KOG1062 Vesicle coat complex A 98.6 2.3E-05 5E-10 75.8 22.3 310 60-397 141-543 (866)
61 PTZ00429 beta-adaptin; Provisi 98.5 8.7E-05 1.9E-09 74.3 26.7 250 74-366 79-330 (746)
62 PF10165 Ric8: Guanine nucleot 98.5 9.7E-06 2.1E-10 76.9 18.8 276 83-367 1-342 (446)
63 COG5369 Uncharacterized conser 98.5 9.5E-07 2.1E-11 81.3 10.9 260 82-361 408-740 (743)
64 KOG0213 Splicing factor 3b, su 98.5 9.2E-06 2E-10 77.8 16.5 316 39-366 615-958 (1172)
65 COG5231 VMA13 Vacuolar H+-ATPa 98.4 3.3E-05 7.2E-10 67.0 17.3 229 73-319 159-427 (432)
66 KOG3678 SARM protein (with ste 98.4 7.8E-06 1.7E-10 74.4 13.8 161 202-365 175-339 (832)
67 COG5215 KAP95 Karyopherin (imp 98.4 5E-05 1.1E-09 70.9 18.3 284 57-366 129-441 (858)
68 COG5231 VMA13 Vacuolar H+-ATPa 98.3 0.00012 2.6E-09 63.7 18.8 226 130-362 163-428 (432)
69 KOG1059 Vesicle coat complex A 98.3 0.00014 3E-09 69.8 20.9 66 208-278 300-365 (877)
70 TIGR02270 conserved hypothetic 98.3 0.00032 6.9E-09 65.6 23.1 187 106-362 88-296 (410)
71 PF00514 Arm: Armadillo/beta-c 98.3 1.5E-06 3.3E-11 52.6 5.0 41 322-362 1-41 (41)
72 PF00514 Arm: Armadillo/beta-c 98.3 1.4E-06 3.1E-11 52.7 4.9 40 238-277 1-40 (41)
73 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00017 3.7E-09 66.5 20.0 222 131-365 40-272 (371)
74 PF12348 CLASP_N: CLASP N term 98.3 2.4E-05 5.2E-10 67.8 13.8 183 178-366 20-210 (228)
75 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00011 2.3E-09 67.9 18.2 221 76-319 38-268 (371)
76 KOG1824 TATA-binding protein-i 98.2 0.00023 4.9E-09 70.4 20.0 275 70-376 577-900 (1233)
77 KOG0212 Uncharacterized conser 98.2 0.00011 2.5E-09 68.4 16.8 274 57-365 163-447 (675)
78 COG5215 KAP95 Karyopherin (imp 98.2 0.00053 1.1E-08 64.3 20.9 279 72-370 230-537 (858)
79 KOG0212 Uncharacterized conser 98.2 6.8E-05 1.5E-09 69.9 14.7 294 73-391 94-399 (675)
80 KOG2734 Uncharacterized conser 98.2 0.0025 5.4E-08 58.1 24.0 266 81-362 102-400 (536)
81 KOG1062 Vesicle coat complex A 98.2 0.00074 1.6E-08 65.8 21.7 250 73-362 117-414 (866)
82 KOG4413 26S proteasome regulat 98.1 0.001 2.3E-08 58.2 20.2 292 51-361 118-476 (524)
83 KOG4413 26S proteasome regulat 98.1 0.00062 1.3E-08 59.6 18.8 280 59-364 80-379 (524)
84 KOG1059 Vesicle coat complex A 98.1 0.00092 2E-08 64.4 21.5 212 75-329 156-372 (877)
85 KOG0213 Splicing factor 3b, su 98.1 0.00049 1.1E-08 66.4 19.7 223 131-365 814-1068(1172)
86 PF05536 Neurochondrin: Neuroc 98.1 0.00061 1.3E-08 66.3 19.9 244 106-365 7-264 (543)
87 KOG1061 Vesicle coat complex A 98.1 0.00011 2.4E-09 71.1 14.3 124 261-397 362-488 (734)
88 KOG1789 Endocytosis protein RM 98.1 0.0015 3.2E-08 65.6 22.0 247 75-343 1784-2140(2235)
89 KOG2259 Uncharacterized conser 98.0 2.3E-05 5.1E-10 74.2 8.6 218 106-359 236-472 (823)
90 COG5181 HSH155 U2 snRNP splice 98.0 0.00024 5.2E-09 67.1 14.9 238 105-366 605-874 (975)
91 KOG1789 Endocytosis protein RM 98.0 0.0038 8.3E-08 62.8 23.7 141 222-365 1740-1886(2235)
92 PF13646 HEAT_2: HEAT repeats; 98.0 3.5E-05 7.6E-10 55.6 7.6 86 251-358 1-88 (88)
93 KOG1242 Protein containing ada 98.0 0.0023 5E-08 60.8 21.3 276 63-367 136-449 (569)
94 PF13646 HEAT_2: HEAT repeats; 98.0 1.7E-05 3.8E-10 57.3 5.8 86 209-316 1-88 (88)
95 COG1413 FOG: HEAT repeat [Ener 98.0 0.00099 2.1E-08 61.4 18.7 190 104-365 43-245 (335)
96 COG5369 Uncharacterized conser 98.0 3.5E-05 7.5E-10 71.4 8.5 182 185-366 409-598 (743)
97 PF12348 CLASP_N: CLASP N term 98.0 0.00015 3.2E-09 62.9 12.3 184 73-283 17-211 (228)
98 KOG1242 Protein containing ada 97.9 0.00087 1.9E-08 63.6 16.9 243 105-381 97-347 (569)
99 PF05536 Neurochondrin: Neuroc 97.9 0.001 2.2E-08 64.8 17.8 195 158-365 6-216 (543)
100 KOG2734 Uncharacterized conser 97.9 0.012 2.7E-07 53.8 23.0 232 75-320 137-400 (536)
101 PF13513 HEAT_EZ: HEAT-like re 97.9 3.1E-05 6.7E-10 50.3 5.2 55 221-276 1-55 (55)
102 PF04078 Rcd1: Cell differenti 97.9 0.00075 1.6E-08 57.8 14.7 205 76-288 8-227 (262)
103 COG5181 HSH155 U2 snRNP splice 97.9 0.00039 8.5E-09 65.7 13.8 166 208-376 605-774 (975)
104 KOG2973 Uncharacterized conser 97.8 0.0092 2E-07 52.1 20.6 243 51-319 34-314 (353)
105 KOG1824 TATA-binding protein-i 97.8 0.0015 3.3E-08 64.8 17.8 174 180-366 834-1040(1233)
106 COG1413 FOG: HEAT repeat [Ener 97.8 0.0065 1.4E-07 56.0 21.6 186 61-319 43-241 (335)
107 KOG3036 Protein involved in ce 97.8 0.0036 7.7E-08 52.7 17.3 182 79-277 95-290 (293)
108 KOG3036 Protein involved in ce 97.8 0.011 2.3E-07 50.0 20.1 204 78-286 39-254 (293)
109 PF13513 HEAT_EZ: HEAT-like re 97.8 4E-05 8.7E-10 49.8 4.5 55 305-360 1-55 (55)
110 PF09759 Atx10homo_assoc: Spin 97.8 0.00017 3.6E-09 52.7 8.1 66 182-247 3-70 (102)
111 KOG0567 HEAT repeat-containing 97.8 0.0084 1.8E-07 51.2 19.1 202 102-364 65-282 (289)
112 KOG1060 Vesicle coat complex A 97.8 0.0051 1.1E-07 60.1 19.8 254 73-368 153-464 (968)
113 PF10165 Ric8: Guanine nucleot 97.8 0.0068 1.5E-07 57.8 20.7 243 73-323 42-340 (446)
114 TIGR02270 conserved hypothetic 97.8 0.001 2.3E-08 62.2 14.9 119 209-361 88-206 (410)
115 PF06025 DUF913: Domain of Unk 97.7 0.014 3.1E-07 54.2 21.9 174 82-261 3-208 (379)
116 KOG1240 Protein kinase contain 97.7 0.0027 5.8E-08 64.7 18.0 259 77-366 437-729 (1431)
117 KOG4151 Myosin assembly protei 97.7 0.00043 9.4E-09 67.5 11.9 241 93-357 493-736 (748)
118 PF09759 Atx10homo_assoc: Spin 97.7 0.00033 7.2E-09 51.1 8.2 68 265-332 2-71 (102)
119 smart00185 ARM Armadillo/beta- 97.6 0.00018 4E-09 43.3 5.2 39 239-277 2-40 (41)
120 smart00185 ARM Armadillo/beta- 97.6 0.00018 4E-09 43.3 5.2 40 323-362 2-41 (41)
121 COG5096 Vesicle coat complex, 97.6 0.0038 8.1E-08 61.9 16.5 156 186-363 41-196 (757)
122 PF08569 Mo25: Mo25-like; Int 97.5 0.027 5.9E-07 51.2 19.8 203 98-321 70-284 (335)
123 KOG1991 Nuclear transport rece 97.4 0.071 1.5E-06 53.8 23.0 243 60-325 409-676 (1010)
124 KOG1077 Vesicle coat complex A 97.4 0.07 1.5E-06 51.9 21.8 138 227-376 309-450 (938)
125 PF11841 DUF3361: Domain of un 97.4 0.0044 9.4E-08 49.2 11.7 135 97-243 4-138 (160)
126 KOG1248 Uncharacterized conser 97.4 0.073 1.6E-06 54.8 22.9 229 131-367 669-903 (1176)
127 PF04078 Rcd1: Cell differenti 97.4 0.0018 4E-08 55.4 10.2 180 79-276 66-260 (262)
128 PF11841 DUF3361: Domain of un 97.4 0.0061 1.3E-07 48.4 12.3 124 202-326 6-137 (160)
129 COG5240 SEC21 Vesicle coat com 97.4 0.029 6.3E-07 53.2 18.3 56 303-361 499-554 (898)
130 KOG1058 Vesicle coat complex C 97.4 0.036 7.8E-07 54.2 19.3 214 106-365 245-466 (948)
131 KOG1240 Protein kinase contain 97.3 0.0043 9.4E-08 63.3 13.4 219 131-366 438-689 (1431)
132 KOG0567 HEAT repeat-containing 97.3 0.02 4.4E-07 48.9 15.5 197 59-319 65-279 (289)
133 PF08569 Mo25: Mo25-like; Int 97.3 0.027 5.9E-07 51.2 17.4 204 151-366 70-287 (335)
134 KOG2259 Uncharacterized conser 97.3 0.0018 3.9E-08 61.9 10.0 207 159-383 236-462 (823)
135 KOG2274 Predicted importin 9 [ 97.3 0.062 1.3E-06 53.7 20.6 228 75-328 462-697 (1005)
136 KOG1943 Beta-tubulin folding c 97.2 0.11 2.4E-06 53.0 21.8 270 55-360 335-609 (1133)
137 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0033 7.2E-08 45.9 8.4 91 266-361 3-95 (97)
138 PF07814 WAPL: Wings apart-lik 97.2 0.034 7.4E-07 51.5 17.2 266 74-366 33-359 (361)
139 KOG2062 26S proteasome regulat 97.2 0.044 9.5E-07 53.5 17.9 141 207-370 519-661 (929)
140 PF13764 E3_UbLigase_R4: E3 ub 97.2 0.093 2E-06 53.2 20.9 255 100-365 113-409 (802)
141 PF12717 Cnd1: non-SMC mitotic 97.1 0.0051 1.1E-07 50.9 10.0 97 262-367 1-98 (178)
142 KOG1060 Vesicle coat complex A 97.1 0.066 1.4E-06 52.7 18.5 209 108-363 39-247 (968)
143 PF05004 IFRD: Interferon-rela 97.1 0.06 1.3E-06 48.7 17.4 181 180-365 58-260 (309)
144 KOG1077 Vesicle coat complex A 97.1 0.16 3.6E-06 49.5 20.5 105 207-321 329-434 (938)
145 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0036 7.7E-08 45.7 7.5 90 224-318 3-94 (97)
146 KOG0211 Protein phosphatase 2A 97.1 0.03 6.6E-07 56.1 16.3 192 158-366 438-629 (759)
147 KOG1061 Vesicle coat complex A 97.1 0.021 4.6E-07 55.9 14.8 251 75-366 61-312 (734)
148 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0018 3.9E-08 48.6 5.8 72 207-278 43-115 (119)
149 COG5096 Vesicle coat complex, 97.0 0.049 1.1E-06 54.3 17.1 157 134-319 38-194 (757)
150 KOG0915 Uncharacterized conser 97.0 0.02 4.4E-07 60.1 14.8 202 183-390 975-1193(1702)
151 KOG0211 Protein phosphatase 2A 97.0 0.046 1E-06 54.9 16.9 276 61-367 237-513 (759)
152 PF05004 IFRD: Interferon-rela 97.0 0.087 1.9E-06 47.7 17.2 183 74-277 54-256 (309)
153 KOG1967 DNA repair/transcripti 96.9 0.013 2.9E-07 58.3 11.9 152 207-361 867-1023(1030)
154 PF11698 V-ATPase_H_C: V-ATPas 96.9 0.004 8.8E-08 46.8 6.5 72 158-236 44-115 (119)
155 KOG0915 Uncharacterized conser 96.9 0.13 2.8E-06 54.4 19.0 288 56-367 993-1311(1702)
156 PF08045 CDC14: Cell division 96.9 0.041 9E-07 47.6 13.4 98 180-277 106-206 (257)
157 PF12717 Cnd1: non-SMC mitotic 96.8 0.063 1.4E-06 44.4 14.1 90 130-237 2-93 (178)
158 PF12460 MMS19_C: RNAPII trans 96.8 0.23 5E-06 47.2 19.7 153 180-340 249-413 (415)
159 KOG4464 Signaling protein RIC- 96.8 0.069 1.5E-06 48.6 14.9 285 77-367 60-407 (532)
160 KOG4535 HEAT and armadillo rep 96.8 0.012 2.6E-07 54.5 10.3 186 181-366 407-607 (728)
161 PF04063 DUF383: Domain of unk 96.8 0.019 4.1E-07 47.8 10.7 105 260-366 6-136 (192)
162 KOG4653 Uncharacterized conser 96.8 0.044 9.6E-07 54.4 14.5 213 131-361 742-963 (982)
163 KOG4653 Uncharacterized conser 96.7 0.049 1.1E-06 54.1 14.0 228 64-318 727-962 (982)
164 PF02985 HEAT: HEAT repeat; I 96.7 0.0028 6.2E-08 35.4 3.4 30 334-363 1-30 (31)
165 KOG0414 Chromosome condensatio 96.7 0.044 9.6E-07 56.2 13.8 156 206-376 918-1080(1251)
166 KOG2274 Predicted importin 9 [ 96.6 0.17 3.6E-06 50.8 17.1 220 131-365 465-692 (1005)
167 KOG1078 Vesicle coat complex C 96.6 0.2 4.3E-06 49.5 17.1 266 60-363 244-533 (865)
168 COG5240 SEC21 Vesicle coat com 96.5 0.89 1.9E-05 43.6 20.1 124 131-276 279-405 (898)
169 KOG1967 DNA repair/transcripti 96.4 0.03 6.5E-07 55.9 10.7 151 157-318 867-1022(1030)
170 PF12719 Cnd3: Nuclear condens 96.4 0.25 5.4E-06 44.6 15.9 155 131-303 42-209 (298)
171 PF11701 UNC45-central: Myosin 96.4 0.055 1.2E-06 43.6 10.4 132 131-275 20-156 (157)
172 PF06025 DUF913: Domain of Unk 96.3 0.57 1.2E-05 43.7 18.2 142 224-366 77-236 (379)
173 PF12719 Cnd3: Nuclear condens 96.3 0.12 2.6E-06 46.7 13.6 144 250-398 27-184 (298)
174 KOG1248 Uncharacterized conser 96.3 0.19 4.1E-06 51.9 15.9 225 75-321 666-899 (1176)
175 PF08045 CDC14: Cell division 96.3 0.075 1.6E-06 46.0 11.5 99 131-236 106-207 (257)
176 KOG4151 Myosin assembly protei 96.3 0.088 1.9E-06 52.0 13.1 158 134-299 560-720 (748)
177 PF04063 DUF383: Domain of unk 96.3 0.046 1E-06 45.4 9.8 124 217-343 5-157 (192)
178 KOG2956 CLIP-associating prote 96.3 0.4 8.6E-06 44.7 16.3 174 180-365 302-480 (516)
179 PF02985 HEAT: HEAT repeat; I 96.2 0.0076 1.7E-07 33.6 3.3 28 251-278 2-29 (31)
180 PF11701 UNC45-central: Myosin 96.2 0.042 9E-07 44.3 8.8 145 209-359 5-156 (157)
181 KOG2062 26S proteasome regulat 96.1 0.54 1.2E-05 46.3 16.8 102 250-367 520-623 (929)
182 PF14668 RICTOR_V: Rapamycin-i 96.0 0.04 8.7E-07 37.6 6.8 68 80-158 4-71 (73)
183 KOG1943 Beta-tubulin folding c 96.0 1.2 2.7E-05 45.8 19.3 243 104-382 341-597 (1133)
184 KOG0414 Chromosome condensatio 95.9 0.1 2.2E-06 53.8 11.8 162 59-261 917-1083(1251)
185 KOG1832 HIV-1 Vpr-binding prot 95.9 0.8 1.7E-05 46.1 17.3 124 242-366 594-777 (1516)
186 PF12460 MMS19_C: RNAPII trans 95.9 0.59 1.3E-05 44.4 16.6 115 250-366 272-398 (415)
187 KOG2999 Regulator of Rac1, req 95.8 0.19 4.2E-06 47.6 12.3 151 76-240 96-246 (713)
188 KOG4535 HEAT and armadillo rep 95.5 0.21 4.5E-06 46.7 11.2 263 76-366 268-563 (728)
189 KOG2032 Uncharacterized conser 95.5 1.2 2.5E-05 42.0 15.7 134 131-276 273-413 (533)
190 PRK14707 hypothetical protein; 95.4 5.6 0.00012 44.5 22.2 276 68-364 338-616 (2710)
191 PF05918 API5: Apoptosis inhib 95.4 0.76 1.7E-05 44.6 15.0 119 180-316 37-158 (556)
192 PF07814 WAPL: Wings apart-lik 95.4 0.74 1.6E-05 42.8 14.7 221 131-366 37-303 (361)
193 PF05918 API5: Apoptosis inhib 95.4 0.42 9.2E-06 46.3 13.2 137 212-367 28-167 (556)
194 KOG2956 CLIP-associating prote 95.3 1.6 3.4E-05 40.9 15.8 147 158-320 330-477 (516)
195 KOG2032 Uncharacterized conser 95.2 0.17 3.7E-06 47.3 9.6 142 216-361 267-415 (533)
196 PF10363 DUF2435: Protein of u 95.1 0.075 1.6E-06 38.3 5.8 83 293-377 5-87 (92)
197 PF12530 DUF3730: Protein of u 95.1 2 4.3E-05 37.2 16.0 199 73-305 11-217 (234)
198 PRK14707 hypothetical protein; 95.1 2.4 5.3E-05 47.1 18.6 279 60-359 162-442 (2710)
199 PF08506 Cse1: Cse1; InterPro 95.1 2.9 6.3E-05 38.9 19.7 266 80-357 57-370 (370)
200 KOG3665 ZYG-1-like serine/thre 95.1 0.64 1.4E-05 47.0 14.2 193 139-357 494-692 (699)
201 COG5209 RCD1 Uncharacterized p 95.1 0.16 3.6E-06 42.4 8.2 142 133-278 117-268 (315)
202 PF14668 RICTOR_V: Rapamycin-i 95.1 0.2 4.2E-06 34.3 7.3 67 133-207 4-70 (73)
203 PF13764 E3_UbLigase_R4: E3 ub 95.0 2.7 5.9E-05 43.0 18.4 180 153-343 113-329 (802)
204 COG5209 RCD1 Uncharacterized p 95.0 0.37 8.1E-06 40.4 10.1 149 79-243 116-274 (315)
205 KOG1820 Microtubule-associated 95.0 0.66 1.4E-05 47.3 13.9 189 60-278 252-443 (815)
206 KOG1991 Nuclear transport rece 94.7 1.2 2.6E-05 45.4 14.6 160 135-302 391-558 (1010)
207 COG5116 RPN2 26S proteasome re 94.7 0.41 9E-06 45.7 10.7 103 249-367 551-655 (926)
208 KOG2999 Regulator of Rac1, req 94.6 0.98 2.1E-05 43.1 12.8 157 209-367 85-247 (713)
209 KOG1058 Vesicle coat complex C 94.6 2.6 5.6E-05 42.0 15.9 111 220-340 372-487 (948)
210 KOG1020 Sister chromatid cohes 94.6 8.4 0.00018 41.7 23.3 109 250-366 817-925 (1692)
211 KOG1820 Microtubule-associated 94.5 0.93 2E-05 46.3 13.6 143 217-367 305-448 (815)
212 KOG2933 Uncharacterized conser 94.3 0.42 9.1E-06 42.2 9.4 143 209-364 90-236 (334)
213 KOG2025 Chromosome condensatio 94.3 4 8.7E-05 40.4 16.6 129 180-317 61-190 (892)
214 KOG1078 Vesicle coat complex C 94.3 6.6 0.00014 39.4 20.3 55 180-239 260-314 (865)
215 PF06371 Drf_GBD: Diaphanous G 94.1 0.4 8.6E-06 39.9 8.8 81 238-319 96-186 (187)
216 PF11865 DUF3385: Domain of un 93.9 0.8 1.7E-05 37.0 9.8 148 59-235 8-156 (160)
217 PF11707 Npa1: Ribosome 60S bi 93.7 5.5 0.00012 36.5 19.4 161 209-369 58-244 (330)
218 KOG1020 Sister chromatid cohes 93.6 2.8 6E-05 45.1 14.9 169 183-365 795-963 (1692)
219 PF06371 Drf_GBD: Diaphanous G 93.6 0.17 3.6E-06 42.2 5.5 91 145-235 95-186 (187)
220 KOG3665 ZYG-1-like serine/thre 93.1 2.5 5.4E-05 42.9 13.7 194 86-316 494-693 (699)
221 PF13251 DUF4042: Domain of un 93.1 2.6 5.7E-05 34.7 11.6 142 223-365 2-177 (182)
222 KOG1243 Protein kinase [Genera 93.0 0.61 1.3E-05 45.8 8.9 171 204-383 327-502 (690)
223 COG5218 YCG1 Chromosome conden 93.0 1.6 3.4E-05 42.1 11.3 121 228-356 72-193 (885)
224 PF10363 DUF2435: Protein of u 93.0 0.39 8.6E-06 34.6 5.9 72 209-282 5-76 (92)
225 COG5098 Chromosome condensatio 93.0 0.67 1.5E-05 45.4 9.0 143 208-365 893-1040(1128)
226 PF11864 DUF3384: Domain of un 92.9 5.6 0.00012 38.5 15.5 258 74-361 40-329 (464)
227 PF08324 PUL: PUL domain; Int 92.8 1.1 2.3E-05 39.8 9.8 157 80-247 80-241 (268)
228 KOG2137 Protein kinase [Signal 92.8 11 0.00024 37.6 16.9 134 205-346 387-521 (700)
229 PF08324 PUL: PUL domain; Int 92.7 1.3 2.8E-05 39.3 10.2 144 135-283 82-236 (268)
230 PF08167 RIX1: rRNA processing 92.5 1.4 2.9E-05 35.9 9.2 117 250-370 26-151 (165)
231 COG5218 YCG1 Chromosome conden 92.3 3.8 8.2E-05 39.7 12.8 128 180-315 66-194 (885)
232 KOG1243 Protein kinase [Genera 92.3 3.3 7.1E-05 40.9 12.7 189 154-362 327-515 (690)
233 COG5116 RPN2 26S proteasome re 92.3 9.3 0.0002 37.0 15.2 129 253-398 520-652 (926)
234 PF01347 Vitellogenin_N: Lipop 92.2 7.4 0.00016 39.2 16.0 200 158-393 396-617 (618)
235 KOG1566 Conserved protein Mo25 92.2 8.3 0.00018 34.4 18.2 206 151-366 73-290 (342)
236 KOG2137 Protein kinase [Signal 91.7 5.6 0.00012 39.5 13.6 114 246-366 386-500 (700)
237 KOG1788 Uncharacterized conser 91.7 12 0.00026 39.2 15.9 260 84-361 663-981 (2799)
238 PF12031 DUF3518: Domain of un 91.6 0.43 9.4E-06 40.6 5.3 85 131-222 139-231 (257)
239 PF11865 DUF3385: Domain of un 91.3 1.6 3.5E-05 35.3 8.3 144 105-277 11-156 (160)
240 KOG2611 Neurochondrin/leucine- 90.9 15 0.00032 34.9 19.0 125 133-260 28-163 (698)
241 KOG1566 Conserved protein Mo25 90.9 11 0.00025 33.6 17.5 202 98-321 73-287 (342)
242 PF13251 DUF4042: Domain of un 90.7 2.4 5.1E-05 35.0 8.8 109 210-321 43-175 (182)
243 KOG2611 Neurochondrin/leucine- 90.5 16 0.00034 34.8 14.5 134 78-218 26-163 (698)
244 COG5656 SXM1 Importin, protein 90.3 22 0.00047 35.8 18.4 282 60-366 407-715 (970)
245 PF12031 DUF3518: Domain of un 90.0 0.79 1.7E-05 39.1 5.5 83 78-171 139-230 (257)
246 KOG2933 Uncharacterized conser 89.6 4.7 0.0001 35.8 10.0 142 158-320 89-234 (334)
247 COG5098 Chromosome condensatio 89.6 2.7 5.8E-05 41.5 9.3 141 61-236 892-1037(1128)
248 PF01347 Vitellogenin_N: Lipop 89.5 1.8 3.9E-05 43.6 8.8 166 208-390 396-581 (618)
249 smart00638 LPD_N Lipoprotein N 89.4 25 0.00054 35.1 17.5 163 209-393 395-573 (574)
250 KOG1788 Uncharacterized conser 89.1 22 0.00048 37.4 15.4 249 62-343 467-784 (2799)
251 smart00638 LPD_N Lipoprotein N 88.9 9.5 0.00021 38.1 13.3 140 106-276 395-543 (574)
252 PF12530 DUF3730: Protein of u 88.8 15 0.00032 31.8 16.5 188 130-346 15-216 (234)
253 PF12231 Rif1_N: Rap1-interact 88.4 22 0.00048 33.3 16.0 221 127-362 57-303 (372)
254 KOG1832 HIV-1 Vpr-binding prot 87.8 22 0.00047 36.6 14.2 81 285-366 595-695 (1516)
255 KOG0413 Uncharacterized conser 87.0 5 0.00011 41.3 9.5 131 126-278 941-1073(1529)
256 PF11229 DUF3028: Protein of u 86.8 30 0.00065 33.2 13.9 239 59-317 40-303 (589)
257 PF08167 RIX1: rRNA processing 86.1 9.3 0.0002 31.0 9.5 112 158-281 26-146 (165)
258 PF08506 Cse1: Cse1; InterPro 86.1 29 0.00064 32.4 17.3 159 140-315 194-370 (370)
259 PLN03076 ARF guanine nucleotid 85.7 68 0.0015 36.6 18.1 270 76-367 1150-1494(1780)
260 KOG2025 Chromosome condensatio 85.0 45 0.00098 33.5 19.9 94 73-189 95-188 (892)
261 PF14726 RTTN_N: Rotatin, an a 84.6 8.7 0.00019 28.0 7.6 69 289-358 28-96 (98)
262 KOG1949 Uncharacterized conser 84.4 25 0.00055 35.1 12.6 170 131-319 189-369 (1005)
263 PF10521 DUF2454: Protein of u 83.6 21 0.00046 31.9 11.5 71 207-277 119-202 (282)
264 PF14500 MMS19_N: Dos2-interac 83.6 31 0.00067 30.5 15.8 215 73-321 9-238 (262)
265 PF04869 Uso1_p115_head: Uso1 83.6 34 0.00075 31.0 18.3 145 220-364 51-233 (312)
266 PF10274 ParcG: Parkin co-regu 83.5 21 0.00046 29.4 10.2 75 249-323 38-112 (183)
267 cd03561 VHS VHS domain family; 83.5 10 0.00023 29.4 8.3 75 292-366 38-116 (133)
268 COG5656 SXM1 Importin, protein 83.4 9.7 0.00021 38.1 9.5 147 248-397 407-570 (970)
269 cd03569 VHS_Hrs_Vps27p VHS dom 83.0 6.5 0.00014 31.0 7.0 75 292-366 42-118 (142)
270 cd03561 VHS VHS domain family; 82.5 8.2 0.00018 30.0 7.4 72 250-321 38-113 (133)
271 cd03567 VHS_GGA VHS domain fam 81.7 9.4 0.0002 30.0 7.4 75 292-366 39-120 (139)
272 KOG1949 Uncharacterized conser 81.4 8.1 0.00018 38.4 8.1 148 210-365 177-334 (1005)
273 KOG4464 Signaling protein RIC- 81.0 28 0.00061 32.4 10.9 156 210-366 48-235 (532)
274 cd03568 VHS_STAM VHS domain fa 80.9 8.5 0.00018 30.4 7.0 71 250-320 38-110 (144)
275 cd03569 VHS_Hrs_Vps27p VHS dom 80.6 8.2 0.00018 30.5 6.7 71 250-320 42-114 (142)
276 cd03568 VHS_STAM VHS domain fa 80.2 9.2 0.0002 30.2 6.9 75 292-366 38-114 (144)
277 KOG2549 Transcription initiati 80.1 25 0.00055 34.0 10.7 118 158-277 240-369 (576)
278 cd08050 TAF6 TATA Binding Prot 80.0 7.6 0.00016 35.8 7.4 129 139-276 198-338 (343)
279 PRK09169 hypothetical protein; 79.3 1.3E+02 0.0029 34.9 20.3 96 65-172 167-262 (2316)
280 PF06685 DUF1186: Protein of u 79.2 40 0.00086 29.4 11.0 126 156-295 72-201 (249)
281 PF01603 B56: Protein phosphat 78.5 33 0.00071 32.6 11.3 253 83-366 110-374 (409)
282 PF04869 Uso1_p115_head: Uso1 77.5 56 0.0012 29.7 13.5 141 180-320 53-231 (312)
283 PF12231 Rif1_N: Rap1-interact 77.2 64 0.0014 30.2 20.2 268 75-362 58-352 (372)
284 KOG0301 Phospholipase A2-activ 76.7 85 0.0018 31.4 14.6 162 76-260 557-727 (745)
285 PF08216 CTNNBL: Catenin-beta- 76.7 5.1 0.00011 29.7 4.1 40 80-119 63-102 (108)
286 PF04388 Hamartin: Hamartin pr 76.7 63 0.0014 33.0 13.2 64 304-367 81-145 (668)
287 cd03567 VHS_GGA VHS domain fam 76.0 17 0.00036 28.6 7.2 71 250-320 39-116 (139)
288 KOG2005 26S proteasome regulat 75.7 92 0.002 31.2 16.3 94 268-373 622-715 (878)
289 KOG0413 Uncharacterized conser 75.6 18 0.00039 37.5 8.8 130 221-366 945-1077(1529)
290 PF10521 DUF2454: Protein of u 75.5 32 0.00069 30.7 9.9 78 105-194 120-203 (282)
291 PF01365 RYDR_ITPR: RIH domain 74.6 18 0.00039 30.6 7.8 126 148-278 34-169 (207)
292 KOG2676 Uncharacterized conser 74.0 6.2 0.00014 35.7 4.8 63 185-247 376-440 (478)
293 PF14726 RTTN_N: Rotatin, an a 73.5 33 0.00071 25.1 8.3 68 205-273 28-95 (98)
294 PF13001 Ecm29: Proteasome sta 72.5 1E+02 0.0022 30.3 15.1 177 131-321 252-444 (501)
295 KOG0891 DNA-dependent protein 72.2 90 0.002 36.6 14.0 161 203-365 561-722 (2341)
296 PF14500 MMS19_N: Dos2-interac 72.0 70 0.0015 28.2 16.3 212 131-366 14-241 (262)
297 PF12830 Nipped-B_C: Sister ch 71.9 56 0.0012 27.1 14.2 148 207-365 8-170 (187)
298 smart00288 VHS Domain present 71.7 21 0.00045 27.8 6.8 72 207-278 37-111 (133)
299 PF01603 B56: Protein phosphat 71.2 96 0.0021 29.5 15.2 135 183-328 236-378 (409)
300 smart00288 VHS Domain present 71.0 18 0.0004 28.1 6.4 71 250-320 38-111 (133)
301 PF12830 Nipped-B_C: Sister ch 70.8 60 0.0013 26.9 11.9 145 158-321 9-168 (187)
302 KOG0301 Phospholipase A2-activ 70.1 1.2E+02 0.0027 30.3 15.2 158 180-343 559-726 (745)
303 PF06685 DUF1186: Protein of u 69.8 76 0.0017 27.7 13.3 89 247-341 71-161 (249)
304 PF14666 RICTOR_M: Rapamycin-i 69.2 74 0.0016 27.4 13.6 131 220-362 77-225 (226)
305 PF08216 CTNNBL: Catenin-beta- 69.0 7.3 0.00016 28.8 3.4 43 224-267 63-105 (108)
306 PF12726 SEN1_N: SEN1 N termin 68.6 76 0.0016 32.8 12.0 102 263-364 495-610 (727)
307 PF14666 RICTOR_M: Rapamycin-i 68.2 78 0.0017 27.2 13.3 143 76-236 77-225 (226)
308 PF04388 Hamartin: Hamartin pr 68.2 65 0.0014 32.9 11.1 62 262-323 81-143 (668)
309 KOG1822 Uncharacterized conser 68.0 94 0.002 35.2 12.4 151 208-362 959-1127(2067)
310 KOG0891 DNA-dependent protein 67.1 89 0.0019 36.6 12.7 200 157-366 565-767 (2341)
311 PF06012 DUF908: Domain of Unk 65.6 39 0.00084 31.0 8.3 66 131-201 237-304 (329)
312 KOG1848 Uncharacterized conser 64.9 1.2E+02 0.0026 33.3 12.1 51 311-361 1073-1131(1610)
313 PF03130 HEAT_PBS: PBS lyase H 64.0 7.5 0.00016 20.5 2.1 26 132-167 1-26 (27)
314 PF12074 DUF3554: Domain of un 64.0 1.2E+02 0.0026 27.9 13.7 213 133-366 4-239 (339)
315 PF13001 Ecm29: Proteasome sta 63.4 66 0.0014 31.5 9.9 172 180-366 252-447 (501)
316 PF08389 Xpo1: Exportin 1-like 62.8 41 0.00089 26.2 7.2 51 180-236 3-54 (148)
317 PF10274 ParcG: Parkin co-regu 62.4 89 0.0019 25.8 11.1 81 158-246 39-119 (183)
318 PF11707 Npa1: Ribosome 60S bi 60.8 1.4E+02 0.003 27.5 18.6 114 251-364 58-190 (330)
319 PF06012 DUF908: Domain of Unk 60.6 39 0.00084 31.0 7.4 65 78-151 237-304 (329)
320 PF14225 MOR2-PAG1_C: Cell mor 60.3 1.2E+02 0.0027 26.7 11.9 158 90-279 97-258 (262)
321 KOG1822 Uncharacterized conser 59.7 2.9E+02 0.0062 31.8 14.1 189 130-330 798-998 (2067)
322 PF12726 SEN1_N: SEN1 N termin 58.9 1.1E+02 0.0024 31.7 11.1 112 252-365 444-556 (727)
323 PF01365 RYDR_ITPR: RIH domain 58.2 37 0.00081 28.6 6.5 95 221-320 75-169 (207)
324 PF00790 VHS: VHS domain; Int 57.8 22 0.00047 27.9 4.6 71 250-320 43-118 (140)
325 PRK09169 hypothetical protein; 55.1 4.2E+02 0.009 31.3 19.7 19 133-151 291-309 (2316)
326 KOG2676 Uncharacterized conser 54.7 17 0.00038 33.0 3.8 64 135-204 375-439 (478)
327 KOG2199 Signal transducing ada 53.6 55 0.0012 30.3 6.8 75 292-366 46-122 (462)
328 smart00567 EZ_HEAT E-Z type HE 53.1 20 0.00044 19.2 2.7 27 131-167 2-28 (30)
329 KOG0392 SNF2 family DNA-depend 51.9 54 0.0012 35.4 7.2 109 250-363 817-926 (1549)
330 cd03572 ENTH_epsin_related ENT 51.6 1.1E+02 0.0023 23.4 9.4 71 292-362 39-119 (122)
331 PF12074 DUF3554: Domain of un 51.1 2E+02 0.0043 26.4 13.3 78 220-301 175-254 (339)
332 KOG2149 Uncharacterized conser 50.0 2.1E+02 0.0044 26.9 9.9 115 208-323 59-173 (393)
333 PF11864 DUF3384: Domain of un 49.4 2.6E+02 0.0055 27.2 19.2 54 306-366 230-289 (464)
334 cd03565 VHS_Tom1 VHS domain fa 48.7 1.2E+02 0.0026 23.8 7.4 75 292-366 39-119 (141)
335 PF12765 Cohesin_HEAT: HEAT re 48.4 18 0.0004 21.5 2.2 40 189-231 3-42 (42)
336 KOG1848 Uncharacterized conser 47.6 1.7E+02 0.0037 32.2 10.0 164 180-351 857-1034(1610)
337 KOG2038 CAATT-binding transcri 47.3 2.5E+02 0.0055 28.9 10.6 71 291-366 304-374 (988)
338 PLN03076 ARF guanine nucleotid 47.2 4.1E+02 0.0088 30.8 13.4 180 180-367 1152-1381(1780)
339 KOG0392 SNF2 family DNA-depend 47.1 3E+02 0.0064 30.3 11.5 179 180-366 144-329 (1549)
340 PF12463 DUF3689: Protein of u 46.7 2.2E+02 0.0049 25.7 15.8 134 150-283 2-178 (303)
341 KOG1525 Sister chromatid cohes 46.7 70 0.0015 35.0 7.4 149 206-363 258-406 (1266)
342 PF11791 Aconitase_B_N: Aconit 46.6 37 0.00079 26.9 4.1 27 335-361 96-122 (154)
343 KOG4524 Uncharacterized conser 46.4 48 0.001 34.5 5.8 92 209-301 805-899 (1014)
344 PLN03205 ATR interacting prote 45.6 2.7E+02 0.0057 26.2 11.5 159 208-367 324-521 (652)
345 KOG4231 Intracellular membrane 43.6 22 0.00049 34.0 2.9 65 212-277 333-398 (763)
346 PF00790 VHS: VHS domain; Int 43.3 1.6E+02 0.0034 23.0 10.0 74 292-365 43-121 (140)
347 PF09758 FPL: Uncharacterised 42.5 64 0.0014 25.6 4.9 124 238-361 15-148 (149)
348 KOG4231 Intracellular membrane 42.4 36 0.00079 32.7 4.1 67 253-319 332-398 (763)
349 PF12463 DUF3689: Protein of u 42.2 2.6E+02 0.0057 25.3 17.6 140 98-243 3-180 (303)
350 PF08389 Xpo1: Exportin 1-like 42.0 1.5E+02 0.0032 22.9 7.3 60 57-117 78-139 (148)
351 PF14663 RasGEF_N_2: Rapamycin 41.6 97 0.0021 23.3 5.7 81 250-342 9-89 (115)
352 cd08050 TAF6 TATA Binding Prot 41.4 85 0.0018 29.0 6.4 125 105-235 211-339 (343)
353 KOG2149 Uncharacterized conser 41.2 2.4E+02 0.0053 26.4 9.0 118 250-368 59-176 (393)
354 PF09324 DUF1981: Domain of un 41.0 82 0.0018 22.2 4.9 65 205-274 15-84 (86)
355 PF12783 Sec7_N: Guanine nucle 40.8 1.9E+02 0.0042 23.3 10.1 76 203-279 69-147 (168)
356 COG5537 IRR1 Cohesin [Cell div 39.8 3.4E+02 0.0073 27.2 10.0 94 180-277 290-385 (740)
357 PF11791 Aconitase_B_N: Aconit 39.4 48 0.001 26.3 3.7 27 293-319 96-122 (154)
358 cd03565 VHS_Tom1 VHS domain fa 37.8 2E+02 0.0043 22.6 7.9 71 250-320 39-115 (141)
359 PF04499 SAPS: SIT4 phosphatas 37.7 2.7E+02 0.0057 27.2 9.3 80 199-278 54-148 (475)
360 KOG2199 Signal transducing ada 37.3 1.4E+02 0.003 27.9 6.7 71 250-320 46-118 (462)
361 PF14663 RasGEF_N_2: Rapamycin 36.8 1.3E+02 0.0028 22.6 5.7 31 334-364 9-39 (115)
362 KOG1525 Sister chromatid cohes 36.0 6.6E+02 0.014 28.0 21.7 76 290-366 258-333 (1266)
363 KOG4524 Uncharacterized conser 35.0 1.5E+02 0.0031 31.3 7.2 95 158-260 804-900 (1014)
364 KOG2011 Sister chromatid cohes 34.4 1.9E+02 0.0041 30.9 8.1 128 180-317 302-432 (1048)
365 PF09758 FPL: Uncharacterised 33.5 1.1E+02 0.0024 24.3 5.0 123 93-234 15-147 (149)
366 PF04499 SAPS: SIT4 phosphatas 33.2 4.6E+02 0.01 25.6 10.1 80 285-364 56-150 (475)
367 KOG2152 Sister chromatid cohes 33.1 5.6E+02 0.012 26.4 12.2 76 82-157 476-556 (865)
368 cd00872 PI3Ka_I Phosphoinositi 32.2 1.1E+02 0.0024 25.0 4.9 16 346-361 84-99 (171)
369 PF09324 DUF1981: Domain of un 31.5 1.3E+02 0.0029 21.1 4.8 65 156-232 16-84 (86)
370 PF12783 Sec7_N: Guanine nucle 31.5 2.8E+02 0.006 22.3 9.4 74 245-321 69-147 (168)
371 PF07923 N1221: N1221-like pro 31.0 1.1E+02 0.0023 27.6 5.2 54 206-259 59-126 (293)
372 cd00197 VHS_ENTH_ANTH VHS, ENT 30.8 2.2E+02 0.0049 21.1 7.3 69 250-318 38-113 (115)
373 KOG2549 Transcription initiati 30.5 5.4E+02 0.012 25.4 10.7 125 106-235 241-369 (576)
374 PF07571 DUF1546: Protein of u 29.5 1.6E+02 0.0035 21.1 5.0 58 177-235 18-77 (92)
375 KOG2038 CAATT-binding transcri 29.1 6.7E+02 0.015 26.1 10.6 72 249-325 304-375 (988)
376 PF04821 TIMELESS: Timeless pr 28.8 4.1E+02 0.0089 23.5 11.3 108 148-279 31-150 (266)
377 PF07571 DUF1546: Protein of u 27.6 1.4E+02 0.0031 21.4 4.4 58 218-276 17-76 (92)
378 cd00864 PI3Ka Phosphoinositide 26.9 2.3E+02 0.005 22.6 5.9 77 292-380 40-118 (152)
379 PF03378 CAS_CSE1: CAS/CSE pro 26.7 5.8E+02 0.013 24.5 12.0 36 204-239 114-149 (435)
380 PF12397 U3snoRNP10: U3 small 26.5 2.8E+02 0.0061 20.8 9.4 68 208-279 7-75 (121)
381 PF14631 FancD2: Fanconi anaem 24.7 2.5E+02 0.0055 31.7 7.5 143 214-363 442-584 (1426)
382 KOG1791 Uncharacterized conser 24.7 1.1E+03 0.023 27.0 13.1 195 94-303 1429-1640(1758)
383 PF08713 DNA_alkylation: DNA a 24.6 2.5E+02 0.0053 23.5 6.2 108 209-332 87-196 (213)
384 KOG1087 Cytosolic sorting prot 23.6 2.2E+02 0.0047 27.6 6.0 70 250-319 39-111 (470)
385 cd00197 VHS_ENTH_ANTH VHS, ENT 23.2 3.2E+02 0.0069 20.3 6.9 70 292-361 38-114 (115)
386 cd06561 AlkD_like A new struct 23.1 1.4E+02 0.0031 24.6 4.4 71 294-370 108-178 (197)
387 PF08713 DNA_alkylation: DNA a 22.9 2.1E+02 0.0045 24.0 5.4 77 207-290 120-196 (213)
388 PF07539 DRIM: Down-regulated 22.7 1.3E+02 0.0027 23.7 3.6 32 331-362 15-46 (141)
389 KOG2225 Proteins containing re 22.1 2.4E+02 0.0053 26.7 5.7 37 62-98 401-437 (695)
390 PF07923 N1221: N1221-like pro 22.1 2.1E+02 0.0047 25.7 5.5 54 248-301 59-126 (293)
391 PF12054 DUF3535: Domain of un 21.9 2.1E+02 0.0045 27.6 5.6 80 221-304 101-181 (441)
392 PF03378 CAS_CSE1: CAS/CSE pro 21.8 7.2E+02 0.016 23.9 14.0 35 155-197 115-149 (435)
393 cd00870 PI3Ka_III Phosphoinosi 20.5 2.8E+02 0.0061 22.5 5.3 77 292-380 47-125 (166)
394 COG5110 RPN1 26S proteasome re 20.0 8.2E+02 0.018 24.4 8.8 75 293-374 643-717 (881)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=297.83 Aligned_cols=299 Identities=24% Similarity=0.358 Sum_probs=267.6
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a 136 (399)
...+.+|.++.++. .++++.+|.+|+|+|.|++++ .+....+++.|++|.|+.++.+++. +++++|
T Consensus 106 i~~G~v~~lV~~l~-~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~eQa 172 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLS-RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVREQA 172 (514)
T ss_pred HHcCcHHHHHHHHc-cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHHHH
Confidence 34467777777774 245678899999999999996 8888899999999999999999887 789999
Q ss_pred HHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (399)
+|+|+|++ +++.+|..+...|++++|+.++...... .+.+.+.|+|.|||.+.......-.....+|.|..+
T Consensus 173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l 245 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL 245 (514)
T ss_pred HHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999987653 788999999999997653322323345789999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHH
Q 015851 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (399)
+.+.|+++...|+|++++|+.+.++..+.+++.|++|.|+.+|.+.+..++.-|+++++|++.+++..++.+++.|+++.
T Consensus 246 l~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 246 LHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPV 325 (514)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-------
Q 015851 296 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS------- 367 (399)
Q Consensus 296 L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------- 367 (399)
|..++. ++...++++|||+|+|++++++++.+.+++.|++|.|+.++++.+.+++++|+|+++|++.....+
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~ 405 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE 405 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 999998 556679999999999999999999999999999999999999999999999999999999988863
Q ss_pred --cchhHHHHH
Q 015851 368 --VLPAILIFI 376 (399)
Q Consensus 368 --~~~~~~~~~ 376 (399)
++++++.++
T Consensus 406 ~giI~plcdlL 416 (514)
T KOG0166|consen 406 QGIIKPLCDLL 416 (514)
T ss_pred cCCchhhhhcc
Confidence 566655555
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.8e-37 Score=261.68 Aligned_cols=315 Identities=20% Similarity=0.298 Sum_probs=266.0
Q ss_pred hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 135 (399)
+.++++++++.+. +....+.+|.|+|.|++++ ....+-+++.|++|.++++|.+.+. +++++
T Consensus 114 GvVpRfvefm~~~-----q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~eQ 176 (526)
T COG5064 114 GVVPRFVEFMDEI-----QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVREQ 176 (526)
T ss_pred cccHHHHHHHHhc-----chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHHHH
Confidence 4556666655432 2345788999999999997 5555677799999999999998877 89999
Q ss_pred HHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (399)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (399)
++|+|+|++ +++.+|+.+.+.|++.+++.++.+..... .+.+.+.|+|.|||.....-..--.....+|.|.+
T Consensus 177 avWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i------smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K 250 (526)
T COG5064 177 AVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI------SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK 250 (526)
T ss_pred HHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH------HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence 999999999 88999999999999999999998654422 78899999999999743221111222456899999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcH
Q 015851 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (399)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (399)
++.+.++++...|+|++..|+.+..+....+++.|+.+.|+.+|.+++..++.-|++.++|+..+++...+.+++.|+++
T Consensus 251 Liys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 251 LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred HHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC--------
Q 015851 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV-------- 366 (399)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------- 366 (399)
.+..+|+++...++++|||+|+|++.++.++.+.+++.+++|+|+.+|.+.+..+++.|+|++.|...+..+
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred ---CcchhHHHHHhhccc-cHHHHHHHHhhhH
Q 015851 367 ---SVLPAILIFIIINEC-QLEVLAFVLSEMV 394 (399)
Q Consensus 367 ---~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 394 (399)
+++.++..++-..+. -+++..-++..++
T Consensus 411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence 355665555544444 3355444444443
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-33 Score=256.34 Aligned_cols=287 Identities=21% Similarity=0.315 Sum_probs=252.3
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.+|.+..++ .+.+..+++.|+|+|+|++.+ +..|+.+++.|++++|+.++..+... ...+++.|
T Consensus 151 agavp~fi~Ll--~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-----------~~lRn~tW 217 (514)
T KOG0166|consen 151 AGAVPIFIQLL--SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-----------SMLRNATW 217 (514)
T ss_pred CCchHHHHHHh--cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-----------HHHHHHHH
Confidence 34666666666 455677899999999999997 99999999999999999999877652 57889999
Q ss_pred HHHHhcCChh-hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 139 ALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 139 ~L~~l~~~~~-~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
+|.|||.+.. ....-.-..++|.|..++.+.+. ++...+||+|.+|+.+....-.++.+.|++|.|+.+|.
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~--------~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~ 289 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE--------EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG 289 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc
Confidence 9999994331 11111223489999999998877 89999999999999777777777889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
+.++.++..|+++++|++.+++...+.++..|++|.|..++. ++...++.+|||+++||+.++...++.++++|++|.|
T Consensus 290 ~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~L 369 (514)
T KOG0166|consen 290 HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVL 369 (514)
T ss_pred CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHH
Confidence 999999999999999999999999999999999999999999 5566799999999999999999999999999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 297 IGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 297 ~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
+.+|++.+.+++++|+|+|+|++.++ ++....+++.|++++|+.+|...|..+...+..+|.++-...+..
T Consensus 370 i~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 370 INLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred HHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999874 577889999999999999999899999999999999998766643
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-33 Score=239.27 Aligned_cols=285 Identities=23% Similarity=0.296 Sum_probs=248.8
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
-.+.+|.+..++. +.+..++++++|+|+|+++| +..|+.+.+.|++.+++.++.++...+ .+.+++.
T Consensus 155 d~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i----------smlRn~T 222 (526)
T COG5064 155 DAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI----------SMLRNAT 222 (526)
T ss_pred eCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH----------HHHHHhH
Confidence 3445666666663 33456899999999999997 889999999999999999998765532 5778999
Q ss_pred HHHHHhc--CChhh-HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851 138 FALGLLA--VKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (399)
Q Consensus 138 ~~L~~l~--~~~~~-~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (399)
|+|.||| .+|.. ...+.. .+|.|.+++...+. ++...++|++.+|+....+.-..+.+.|..+.|++
T Consensus 223 WtLSNlcRGknP~P~w~~isq--alpiL~KLiys~D~--------evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvE 292 (526)
T COG5064 223 WTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYSRDP--------EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVE 292 (526)
T ss_pred HHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhhcCH--------HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHH
Confidence 9999999 44433 233333 68999999988776 89999999999999766666667888899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcH
Q 015851 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (399)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (399)
+|.+++..++..|++.++|+..+++...+.++..|+++.+-.+|+++.+.++.+|||+++|++.++.+..+.+++.+.+|
T Consensus 293 lLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliP 372 (526)
T COG5064 293 LLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIP 372 (526)
T ss_pred HhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccC---hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 295 PVIGLLSSCCSESQREAALLLGQFAATD---SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+|+++|.+.+..++++|||+++|.++++ |+..+.+++.|++++|+.+|.-.+..+.+.+..++.|+-+-..
T Consensus 373 pLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 373 PLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 9999999999999999999999999764 6788999999999999999998788888888999998886554
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.98 E-value=1.2e-29 Score=264.15 Aligned_cols=309 Identities=21% Similarity=0.260 Sum_probs=253.5
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.++.|..+++ +.++..|..|+++|.+++.+ ++.+..+++.|+||.|+++|.+.++ +.+|++|+|
T Consensus 188 aGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE~AA~ 254 (2102)
T PLN03200 188 AGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRAEAAG 254 (2102)
T ss_pred cCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHHHHHH
Confidence 457777777774 45678899999999888875 8899999999999999999976433 178999999
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCcc-ccccHHHHHHHHHHHHHHhhcCch-----------h------
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSS-----------I------ 199 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~~-----------~------ 199 (399)
+|.+|+ .+++++..+++.|+++.|++++.....+.. ......+++++.|+|.|+|.+.+. .
T Consensus 255 AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ 334 (2102)
T PLN03200 255 ALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPI 334 (2102)
T ss_pred HHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHH
Confidence 999999 789999999999999999999985442110 000015788899999998853111 0
Q ss_pred ---------------------------------------------H-----------------HHHHhcCChHHHHHhhc
Q 015851 200 ---------------------------------------------K-----------------TRVRMEGGIPPLVELLE 217 (399)
Q Consensus 200 ---------------------------------------------~-----------------~~~~~~~~i~~L~~ll~ 217 (399)
+ ..+...++++.|+.++.
T Consensus 335 ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~ 414 (2102)
T PLN03200 335 ADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLIT 414 (2102)
T ss_pred HHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhc
Confidence 0 00112234455566666
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
..+.+++..++++|++|+.++.+....+.+.|++|.|+.+|.++++.++..|+++|++++.++++.+..++++|+++.|+
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV 494 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV 494 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 66778999999999999988888999999999999999999999999999999999999988888889999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHh
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII 377 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 377 (399)
++|.+++..++++|+|+|+|++..+++.+..+.+.|++++|+++|.++++++++.|+++|.++....++..++.++.++.
T Consensus 495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 99999999999999999999997655566666688999999999999999999999999999999888877777766654
Q ss_pred hccc
Q 015851 378 INEC 381 (399)
Q Consensus 378 ~~~~ 381 (399)
.++.
T Consensus 575 sdd~ 578 (2102)
T PLN03200 575 GDLP 578 (2102)
T ss_pred CCCh
Confidence 4443
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=8.3e-29 Score=258.10 Aligned_cols=293 Identities=21% Similarity=0.268 Sum_probs=252.4
Q ss_pred HHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (399)
Q Consensus 63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 141 (399)
++.|.+++. ..+.+.|..++|+|.+++.+ .+.+..+.+.|+++.|+++|.+++. .+++.|+++|+
T Consensus 406 ik~LV~LL~--~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~------------~iQ~~A~~~L~ 471 (2102)
T PLN03200 406 KKVLVGLIT--MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSE------------QQQEYAVALLA 471 (2102)
T ss_pred hhhhhhhhc--cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence 334444442 34567899999999999975 8889999999999999999998765 78999999999
Q ss_pred Hhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (399)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (399)
+++ .+++.+..+++.|++|.|+++|.+++. .+++.++|+|+|++.+.+..+..+...|+++.|+++|++++
T Consensus 472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~--------~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd 543 (2102)
T PLN03200 472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQ--------KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG 543 (2102)
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 999 788899999999999999999997765 89999999999999877777777778899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhh-------------------------------------HHHHHhcCCHHHHHHhhcCCCH
Q 015851 221 TKVQRAAAGALRTLAFKNDEN-------------------------------------KNQIVECNALPTLILMLRSEDS 263 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~-------------------------------------~~~~~~~~~~~~L~~ll~~~~~ 263 (399)
++++..|+++|.+|+.+.+.. .......|+++.|+.+++++++
T Consensus 544 ~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~ 623 (2102)
T PLN03200 544 PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKE 623 (2102)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCH
Confidence 999999999999996421110 0011246899999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhh
Q 015851 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEML 342 (399)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll 342 (399)
.+++.|+|+|.+++.++++....++..|++++++.+|++.+.+++++++|+|.|++.... +++..+.+.|++++|++++
T Consensus 624 ~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL 703 (2102)
T PLN03200 624 ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA 703 (2102)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999888888999999999999999999999999999999999996543 4566788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCC-------CcchhHHHHHh
Q 015851 343 QSPDVQLREMSAFALGRLAQVITV-------SVLPAILIFII 377 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~ 377 (399)
++++.+++..|+.+|.|++.+.+. +.++.+...+.
T Consensus 704 ~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr 745 (2102)
T PLN03200 704 KSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR 745 (2102)
T ss_pred hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH
Confidence 999999999999999999998864 35666555554
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-28 Score=210.07 Aligned_cols=291 Identities=24% Similarity=0.291 Sum_probs=256.7
Q ss_pred hHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcch
Q 015851 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (399)
Q Consensus 50 d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 129 (399)
|.....++....+.| +.++- ++.|..+|..++.+|.++....++|..++..|++|.|++++++.+.
T Consensus 157 d~nk~kiA~sGaL~p-ltrLa--kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~----------- 222 (550)
T KOG4224|consen 157 DSNKVKIARSGALEP-LTRLA--KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL----------- 222 (550)
T ss_pred ccchhhhhhccchhh-hHhhc--ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh-----------
Confidence 334444444444444 33332 4567779999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~--~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (399)
++|+.++.++++++-+...|..+++.+ .++.|++++.++++ .++..+.-+|.|++.+.... ..+.+.|
T Consensus 223 -dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~--------kvkcqA~lALrnlasdt~Yq-~eiv~ag 292 (550)
T KOG4224|consen 223 -DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD--------KVKCQAGLALRNLASDTEYQ-REIVEAG 292 (550)
T ss_pred -hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh--------HHHHHHHHHHhhhcccchhh-hHHHhcC
Confidence 899999999999999999999999988 99999999999888 89999999999999655554 4588899
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
.+|.++++++++..........++.|++. +|-+...+.+.|++..|+.+|+.. +++++-+|..+|+|++.++..++..
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~ 371 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSV 371 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHH
Confidence 99999999999887777788889999998 688888899999999999999975 5569999999999999888888999
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+..+|+++.++.++...+.+++.+...++..++- ++..+..+.+.|++|.|+.++.+.+.+++.+|+.+|.|++++-++
T Consensus 372 i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 372 IRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred HhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 9999999999999999999999999999999984 678889999999999999999999999999999999999987775
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.9e-28 Score=207.52 Aligned_cols=271 Identities=26% Similarity=0.295 Sum_probs=246.6
Q ss_pred hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 153 (399)
.++.++|..+..|+.+++.-.+++..+...|++.++..+-++.+. .+|+++..+|.+++...++|+.+
T Consensus 137 td~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdi------------rvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 137 TDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDI------------RVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred CCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchh------------hHHHHHHHHHHHhhhhhhhhhhh
Confidence 345678999999999999988899999999999999997776666 78999999999999999999999
Q ss_pred HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhhcCCCHHHHHHHHHHH
Q 015851 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG--GIPPLVELLEFTDTKVQRAAAGAL 231 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~v~~~a~~~L 231 (399)
+.+|++|.|+.++++.+. ++++.++.+++|++ .+...+..+.+.+ .+|.|+.++.+++++++..|..+|
T Consensus 205 V~aG~lpvLVsll~s~d~--------dvqyycttaisnIa-Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL 275 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDL--------DVQYYCTTAISNIA-VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL 275 (550)
T ss_pred hccCCchhhhhhhccCCh--------hHHHHHHHHhhhhh-hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 999999999999999887 89999999999999 4666677777776 999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh-HHHHH
Q 015851 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQRE 310 (399)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~ 310 (399)
+||+. ..++...+++.|.+|.++.+++++..........++.|++.+ +-+...+.+.|++.+|+.+|+.++. +++.+
T Consensus 276 rnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqch 353 (550)
T KOG4224|consen 276 RNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCH 353 (550)
T ss_pred hhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchhhhhh
Confidence 99998 689999999999999999999999888888999999999976 5666788899999999999996554 69999
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
|..+|+|++..+..+++.+.+.|++|++..++.++...++.....++..++-+...+
T Consensus 354 AvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k 410 (550)
T KOG4224|consen 354 AVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK 410 (550)
T ss_pred HHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence 999999999878899999999999999999999999999999999999999877653
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=1.1e-19 Score=176.08 Aligned_cols=314 Identities=20% Similarity=0.229 Sum_probs=253.2
Q ss_pred hHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcch
Q 015851 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (399)
Q Consensus 50 d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 129 (399)
|+.........+.++.|.+++. .++.+....++..|.+|+-..+++..+.+.|+++.|+.++.+++.
T Consensus 279 d~~ve~kM~~~~iV~~Lv~~Ld--r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~----------- 345 (708)
T PF05804_consen 279 DPRVELKMVNKGIVSLLVKCLD--RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE----------- 345 (708)
T ss_pred ChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH-----------
Confidence 3333444457788888888884 456778999999999999999999999999999999999998765
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
+++..++++|.||+.+++.|..++..|++|.|+.+|.+. ..+..++.+|++++. ++..+..+...+++
T Consensus 346 -~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcI 413 (708)
T PF05804_consen 346 -DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCI 413 (708)
T ss_pred -HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchH
Confidence 789999999999999999999999999999999999854 445678999999995 66788889889999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 210 PPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 210 ~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
|.+++++.+ +++.+...++..+.|++. ++.+.+.+++.++++.|+...-.....+ ....+.|++.+++..+..+.
T Consensus 414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~ 489 (708)
T PF05804_consen 414 PQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV 489 (708)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH
Confidence 999998655 557778888999999998 7899999999999999997654433222 34689999987645444443
Q ss_pred HCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCC
Q 015851 289 AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 289 ~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+.+..|+..+.. .+.+...++.++|+|++..+.+....+.+.+++|.|.++|.. .++++.-.++..++.++.+..
T Consensus 490 --~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~ 567 (708)
T PF05804_consen 490 --DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE 567 (708)
T ss_pred --HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH
Confidence 578888888875 466899999999999987555666666678999999999964 356788889999999997654
Q ss_pred C-------CcchhHHHHHhhccccHHHHHHHHhhhH
Q 015851 366 V-------SVLPAILIFIIINECQLEVLAFVLSEMV 394 (399)
Q Consensus 366 ~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 394 (399)
. ++++.++.++..+...+++..+++..|-
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 2 4677777777767777788777776554
No 10
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.86 E-value=6.2e-21 Score=188.00 Aligned_cols=278 Identities=22% Similarity=0.203 Sum_probs=235.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH-hcCc
Q 015851 81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV-DNGA 158 (399)
Q Consensus 81 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~-~~~~ 158 (399)
..|+.+|-+++.|+++|..+-+.|++..+.+|+.-+..--..-+.....-.+|+++.++|.||+ .+..++..+. ..|+
T Consensus 316 caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 316 CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 3788889999999999999999999999999886432211101122334478999999999999 5555665544 5789
Q ss_pred HHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-cCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhc
Q 015851 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAF 236 (399)
Q Consensus 159 i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~ 236 (399)
+..++..|.+..+ ++....+.+|.||+. .+.+.+..+...|-+..|+.+ |....+......+.+||||+.
T Consensus 396 MeavVAQL~s~pe--------eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSA 467 (2195)
T KOG2122|consen 396 MEAVVAQLISAPE--------ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSA 467 (2195)
T ss_pred HHHHHHHHhcChH--------HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhh
Confidence 9999999999887 899999999999994 445566667777888888887 555667888999999999999
Q ss_pred CChhhHHHHHh-cCCHHHHHHhhcCC----CHHHHHHHHHHHHHhh---cCChhHHHHHHHCCCcHHHHHhhcCCChHHH
Q 015851 237 KNDENKNQIVE-CNALPTLILMLRSE----DSAIHYEAVGVIGNLV---HSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (399)
Q Consensus 237 ~~~~~~~~~~~-~~~~~~L~~ll~~~----~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 308 (399)
+..+++..|+. .|++..|+.+|..+ .-.+.+.|-++|.|++ ...+.+++.+.+++.+..|+..|++.+..+.
T Consensus 468 HcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiV 547 (2195)
T KOG2122|consen 468 HCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIV 547 (2195)
T ss_pred cccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEe
Confidence 99999999998 68999999999864 4478889999998876 3456788999999999999999999999999
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++|++||||...+++.++.+++.|+++.|..++++++..+..-++.+|.|+..+.+.
T Consensus 548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 9999999999999999999999999999999999999999999999999999988764
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=1.6e-18 Score=168.14 Aligned_cols=282 Identities=18% Similarity=0.231 Sum_probs=224.9
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
..++++.|.+++ ++++...+..+++.|.|++.+++.|..+++.|++|.|+.+|.+++ .+..+..
T Consensus 329 ~~giV~kL~kLl--~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--------------~~~val~ 392 (708)
T PF05804_consen 329 ESGIVEKLLKLL--PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--------------FREVALK 392 (708)
T ss_pred HcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--------------hHHHHHH
Confidence 445788888887 445667899999999999999999999999999999999998643 3457999
Q ss_pred HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH--------
Q 015851 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP-------- 210 (399)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-------- 210 (399)
+|.+++.+++++..+...++++.+++++...+.+ ++...++..+.|++. ++...+.+...++++
T Consensus 393 iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~-------~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~ 464 (708)
T PF05804_consen 393 ILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEE-------EVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALK 464 (708)
T ss_pred HHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCc-------cccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999998776544 333445555555553 222223333334443
Q ss_pred -----------------------------HHHHhhcCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851 211 -----------------------------PLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (399)
Q Consensus 211 -----------------------------~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (399)
.|+..+..+ +++....++++|+||...+.+....+-+.+.+|.+.++|..
T Consensus 465 ~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~ 544 (708)
T PF05804_consen 465 TRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP 544 (708)
T ss_pred cccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC
Confidence 334444433 57888999999999998555555556668999999999976
Q ss_pred C--CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChhhHHHHHh-cCCH
Q 015851 261 E--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAV 335 (399)
Q Consensus 261 ~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~g~v 335 (399)
+ ++++..+++..++.++. ++.....+.+.|+++.|+.+|+. .+.++..+.++++.++..+ ++.+..+.. .+++
T Consensus 545 g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~ 622 (708)
T PF05804_consen 545 GASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIP 622 (708)
T ss_pred CCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchH
Confidence 4 55799999999999985 57888888899999999999974 5679999999999999976 667776654 8899
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 336 RPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
..|+.+++++++++|+.|-.+|.-++..+..
T Consensus 623 ~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 623 AYLIDLMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 9999999999999999999999999988874
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.2e-16 Score=134.30 Aligned_cols=283 Identities=17% Similarity=0.238 Sum_probs=232.8
Q ss_pred HHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851 63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (399)
Q Consensus 63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 141 (399)
+..+..++..+.++.++-...+.++..-+- ++.+|..|.+.++++.+.+.|...... ++.+...|++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~-----------~~VRel~~a~r 215 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKT-----------RTVRELYDAIR 215 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCcc-----------HHHHHHHHHHH
Confidence 344555555566667777778888888776 699999999999999999888766542 57788999999
Q ss_pred HhcCChh----------hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851 142 LLAVKPE----------HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (399)
Q Consensus 142 ~l~~~~~----------~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (399)
-|..+++ +...|...|++..|++.++-..++ ++....+.+|..|+..++-+ ..+.+.|++..
T Consensus 216 ~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp-------~~L~~l~~tl~~lAVr~E~C-~~I~e~GGl~t 287 (461)
T KOG4199|consen 216 ALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP-------DSLVSLSTTLKALAVRDEIC-KSIAESGGLDT 287 (461)
T ss_pred HhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc-------cHHHHHHHHHHHHHHHHHHH-HHHHHccCHHH
Confidence 9984443 456778888999999999988775 78888999999999655544 45889999999
Q ss_pred HHHhhcCCC-H---HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 212 LVELLEFTD-T---KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 212 L~~ll~~~~-~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
+++++.+.+ . .....+++.|+.|+- +++.+..+++.|+.+.++.++. +++|.+...++.+++-|+-..++...
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa 366 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSA 366 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHH
Confidence 999998844 3 355677888888885 8999999999999999998875 46899999999999999988899989
Q ss_pred HHHHCCCcHHHHHhhcCCC--hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 286 EVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
.+++.|+-...++.|+..+ ..++++|||.|.|++..+.+++..++..| ++.|+..-...++.+...|..+|+.|..+
T Consensus 367 ~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 367 KAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9999999999999998543 37999999999999998888888777765 57788888888999999999999999876
Q ss_pred CCC
Q 015851 364 ITV 366 (399)
Q Consensus 364 ~~~ 366 (399)
...
T Consensus 446 v~l 448 (461)
T KOG4199|consen 446 VYL 448 (461)
T ss_pred hhh
Confidence 553
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.9e-15 Score=128.50 Aligned_cols=271 Identities=17% Similarity=0.253 Sum_probs=225.2
Q ss_pred hhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851 74 EADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~ 151 (399)
+.+.....+++.+|..+... |+ +++..++..++.+|..... +.++-.....++..-| .+..+|+
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~----------~~dlt~~~~~~v~~Ac~~hE~nrQ 183 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE----------SEEVTLLTLQWLQKACIMHEVNRQ 183 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc----------hHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556677888888877765 54 4577889999999876544 2377778888888888 8899999
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc---------hhHHHHHhcCChHHHHHhhcCC-CH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEFT-DT 221 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~ 221 (399)
.+++.++++.+.+.|...... .+.+..+|++..|..+++ .....+...|++..|++.+.-. +|
T Consensus 184 ~~m~~~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 184 LFMELKILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HHHHhhHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 999999999999898877664 688889999999985443 2234577778899999998763 58
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CH---HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
.+...++.+|..|+. .++.+..+.+.|++..|+.++.+. +. ++...++..|..|+ +++..+..+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence 899999999999998 789999999999999999999873 33 45578888899998 5678899999999999999
Q ss_pred Hhhc--CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCCCC
Q 015851 298 GLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 298 ~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.++. +.+|.+..+++.+++-++-..|++...+++.|+-...++.|+. ....++++|+++++|++..+.+.
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9975 5788999999999999999999999999999999999999964 35679999999999999888763
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=2.1e-16 Score=156.59 Aligned_cols=286 Identities=20% Similarity=0.268 Sum_probs=229.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccc--------------------------------------
Q 015851 81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD-------------------------------------- 122 (399)
Q Consensus 81 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~-------------------------------------- 122 (399)
+.-...|..++.+++.+..++..|+++.|+++|.-.+....+
T Consensus 212 ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraY 291 (2195)
T KOG2122|consen 212 EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAY 291 (2195)
T ss_pred HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 366888999999999999999999999999999876653222
Q ss_pred -----------cC-CCcchHHHH-HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccC----ccccccHHHHHHH
Q 015851 123 -----------RN-LKPFEHEVE-KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS----NCSRAVNSVIRRA 185 (399)
Q Consensus 123 -----------~~-~~~~~~~~~-~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~----~~~~~~~~~~~~a 185 (399)
+. ..+...+-+ +.|+.+|..++.+.++|..+.+.|++..+-+++.-.... ........+++++
T Consensus 292 C~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa 371 (2195)
T KOG2122|consen 292 CETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYA 371 (2195)
T ss_pred HHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 00 001111112 378889999999999999999999999999988653221 1111223899999
Q ss_pred HHHHHHHhhcCchhHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHH-HhcCCHHHHHHh-hcCCC
Q 015851 186 ADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILM-LRSED 262 (399)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~~L~~l-l~~~~ 262 (399)
..+|.||...+...+..+. ..|++..++..|.+...++....+++|+||++..+.+...+ .+.|.+..|+.. |+...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 9999999998887776554 45899999999999999999999999999999777765554 557888888875 45566
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHH-CCCcHHHHHhhcCC----ChHHHHHHHHHHHHhhcc---ChhhHHHHHhcCC
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSC----CSESQREAALLLGQFAAT---DSDCKVHIVQRGA 334 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~g~ 334 (399)
+......+.+||||+.+..+++..|.. .|++..|+.+|... ...+.+.|.++|.|.+.. .++.++.+.+.++
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 678889999999999888888877765 57899999999754 337888888898887754 4678888999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 335 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+..|++.|++.+.-|..+++.+|+||....+.
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~ 563 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSARSPE 563 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcCCHH
Confidence 99999999999999999999999999987774
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.70 E-value=2.8e-15 Score=129.39 Aligned_cols=197 Identities=17% Similarity=0.160 Sum_probs=167.3
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
+.++.++.|..++. ...|+.++..|+.++++.+..+.+++.+.+.|+++.+..+|.++++ .++..|+
T Consensus 9 l~~~~l~~Ll~lL~-~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~AL 75 (254)
T PF04826_consen 9 LEAQELQKLLCLLE-STEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKAL 75 (254)
T ss_pred cCHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHHH
Confidence 44556677777764 2468899999999999999999999999999999999999999877 7899999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
++|.|++.+.+++..+-. +++.+++.+.+...+. +++..++.+|.||+..+. .+..+. +.++.++.+|.
T Consensus 76 ~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~~~-~~~~l~--~~i~~ll~LL~ 144 (254)
T PF04826_consen 76 NALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVTND-YHHMLA--NYIPDLLSLLS 144 (254)
T ss_pred HHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCCcc-hhhhHH--hhHHHHHHHHH
Confidence 999999988888887754 6888888766654332 899999999999995443 344443 47999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcC
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 279 (399)
+++..++..++++|.||+. ++.....++..+++..++.+++.+ +.++...++....||..+
T Consensus 145 ~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 145 SGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 899999999999999999999875 678999999999999643
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.66 E-value=7.8e-15 Score=139.59 Aligned_cols=281 Identities=21% Similarity=0.281 Sum_probs=214.4
Q ss_pred hhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CC--hhhH
Q 015851 75 ADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK--PEHQ 150 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~--~~~~ 150 (399)
.++.+|-.|..-+..++. +.+.+..+.+.|+|+.|+.+|.+... +++++|+++|.||. .. .+++
T Consensus 245 q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 245 QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHHHHHHHHhhhcccCCcccc
Confidence 467788899999999999 58888899999999999999999877 89999999999999 33 3488
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC------------
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------------ 218 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------ 218 (399)
-.+.+.++++.++++|....+. ++++.+..+||||++. +..+..+. ...++.|....-.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCccc
Confidence 8999999999999999986665 9999999999999965 55555343 4455555544321
Q ss_pred --CCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCh-----hHH
Q 015851 219 --TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSP-----NIK 284 (399)
Q Consensus 219 --~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~-----~~~ 284 (399)
.+..+...+.++|+|++....+.++.+.+ .|.|..|+..+++ .+....+++..++.|+..... ...
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 12568899999999999988888999988 6889999988873 466788889999999874221 000
Q ss_pred HHH------------------------------------------------HHCCCcHHHHHhhc-CCChHHHHHHHHHH
Q 015851 285 KEV------------------------------------------------LAAGALQPVIGLLS-SCCSESQREAALLL 315 (399)
Q Consensus 285 ~~~------------------------------------------------~~~~~l~~L~~lL~-~~~~~v~~~a~~~L 315 (399)
+.+ ....++..-+.+|. +.+..+.+.++++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 000 00112223233333 44567889999999
Q ss_pred HHhhccCh----hhHHHH-HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC------cchhHHHHH
Q 015851 316 GQFAATDS----DCKVHI-VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS------VLPAILIFI 376 (399)
Q Consensus 316 ~~l~~~~~----~~~~~l-~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~~~ 376 (399)
-|++.+.. ..+..+ ....+++.|+++++.++..|...++.+|+|++.+..++ .+|.++..+
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~L 615 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCL 615 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhC
Confidence 99998753 233334 56889999999999999999999999999999998875 445555444
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.64 E-value=4.8e-14 Score=124.87 Aligned_cols=293 Identities=19% Similarity=0.171 Sum_probs=211.4
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHhC----CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851 76 DRAAAKRATHVLAELAKNEEVVNWIVEG----GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~----g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~ 150 (399)
+..++..+..|+...+.++..|..|... |++..|.+..++++. ++..++.++|+|+| .+.++|
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R 122 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENR 122 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhH
Confidence 3456778888999999888777776654 556666666666544 78889999999999 899999
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--C---------
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--T--------- 219 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~--------- 219 (399)
..+.+.|+-..+++.|+..-..... ..-+.....++.|.|...++...+.++.+.|+++.|...+.- .
T Consensus 123 ~a~~~lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll 201 (604)
T KOG4500|consen 123 AAFFNLGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLL 201 (604)
T ss_pred HHHHhcCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHH
Confidence 9999999988888888753221110 111677888999999999899989889999999877655421 1
Q ss_pred -----------------------------------CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-CC-
Q 015851 220 -----------------------------------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-ED- 262 (399)
Q Consensus 220 -----------------------------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~~- 262 (399)
++.+.++....|...+. ++..+-.+.+.|.+..++.+++. ++
T Consensus 202 ~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~ 280 (604)
T KOG4500|consen 202 APFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDF 280 (604)
T ss_pred hccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccc
Confidence 23344444555555554 45555566777777777777764 11
Q ss_pred ------HHHHHHHHHHHHHhhcCChhHHHHHHHCC-CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 015851 263 ------SAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (399)
Q Consensus 263 ------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v 335 (399)
-..-..++....-+..++ +.-+.+...+ +++.+..++.+.+......+..+|+|++.. +++..++++.|.+
T Consensus 281 t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~ 358 (604)
T KOG4500|consen 281 TKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFL 358 (604)
T ss_pred cchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 123334444444454453 3345555555 899999999999999999999999999975 6777889999999
Q ss_pred HHHHHhhC-----CCCHHHHHHHHHHHHHhhccCCCC-------cchhHHHHHhhccccHH
Q 015851 336 RPLIEMLQ-----SPDVQLREMSAFALGRLAQVITVS-------VLPAILIFIIINECQLE 384 (399)
Q Consensus 336 ~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~~~~~~~~~ 384 (399)
..|++++. +++.+++++++.+|+|++..-+++ ....++..+.+..+.+.
T Consensus 359 nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~ 419 (604)
T KOG4500|consen 359 NKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVT 419 (604)
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcch
Confidence 99999983 478889999999999999887764 23345555555555443
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=1.8e-13 Score=118.26 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=161.6
Q ss_pred HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHH
Q 015851 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (399)
Q Consensus 101 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~ 180 (399)
.+.+-+..|+.+|+.... |.+++.+..++++.+..+.++..+.+.|+++.+..++.+++. .
T Consensus 9 l~~~~l~~Ll~lL~~t~d-----------p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~ 69 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-----------PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------S 69 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------H
Confidence 456678889999986543 389999999999999999999999999999999999999876 8
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (399)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll 258 (399)
++..++++|.|++. +.+.+..+.. .++.+.+.+.+ -+..++..++++|.||+. .+++...+.. .++.++.+|
T Consensus 70 vr~~AL~aL~Nls~-~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL 143 (254)
T PF04826_consen 70 VREKALNALNNLSV-NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLL 143 (254)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHH
Confidence 99999999999995 4444444433 46666665444 357899999999999997 4555555543 699999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC-ChHHHHHHHHHHHHhhc
Q 015851 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAA 320 (399)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 320 (399)
..++..++..++++|.||+. ++.....++..+++..++.+++.. +.++...+++...|+..
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999996 477788999999999999999865 66889999999999964
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.59 E-value=2.6e-12 Score=123.52 Aligned_cols=282 Identities=22% Similarity=0.251 Sum_probs=223.2
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
.+...+.|...+. .+++.+|..+++.|.++..+ ......+.+.++++.++.++.+++. ++...|.
T Consensus 75 ~~~~~~~L~~gL~--h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~------------~Va~~A~ 140 (503)
T PF10508_consen 75 LPQYQPFLQRGLT--HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL------------SVAKAAI 140 (503)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH------------HHHHHHH
Confidence 4566677777774 45678999999999999987 4446677789999999999998887 7888999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
.+|.+++..+...+.+...+.+..|..++...++ .++..+..++.+++..++.....+...|+++.++..+.
T Consensus 141 ~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~--------~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~ 212 (503)
T PF10508_consen 141 KALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSD--------IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD 212 (503)
T ss_pred HHHHHHhCCchhHHHHhCcchHHHHHHHHhccCH--------HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc
Confidence 9999999777777788888889999999988665 78888999999999988888888888999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CH---H-HHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DS---A-IHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~---~-v~~~a~~~L~~l~~~~~~~~~~~~~~~ 291 (399)
++|.-++..++..|..|+. .+.+...+.+.|+++.|..++.+. ++ . ..-......++++...+..... .-..
T Consensus 213 ~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~ 290 (503)
T PF10508_consen 213 SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPA 290 (503)
T ss_pred CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHH
Confidence 9999999999999999999 788899999999999999999753 22 1 1223335667777643332211 1134
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH-Hh-cCCH----HHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI-VQ-RGAV----RPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~-~g~v----~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
++..+.+++.+.++..+..|..+++.+++ ..+++..+ .. .+.+ ..+-....++..+++..+..++.++-...+
T Consensus 291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 291 FLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 56677777888999999999999999985 57777777 33 2333 444444456788999999999999965444
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.57 E-value=2.5e-13 Score=129.52 Aligned_cols=287 Identities=20% Similarity=0.203 Sum_probs=209.4
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC---hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKN---EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
-++.|..++ .....+++..|+++|.||..+ .++.-.+...++|+.++++|....+. ++++.+..
T Consensus 276 gI~kLv~Ll--~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-----------ev~e~iTg 342 (717)
T KOG1048|consen 276 GIPKLVALL--DHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-----------EVRELITG 342 (717)
T ss_pred cHHHHHHHh--cCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-----------HHHHHHHH
Confidence 455566665 345678999999999999985 34777899999999999999974332 89999999
Q ss_pred HHHHhcCChhhHHHHHhcCcHHHHHHHHhcccc----Ccccc--ccHHHHHHHHHHHHHHhhcCchhHHHHHhc-CChHH
Q 015851 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD----SNCSR--AVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPP 211 (399)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~----~~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~ 211 (399)
+|+||+.++..+..++.. .+..|...+-.... ++..+ -..++...+.++|.|++......++.+... |.|..
T Consensus 343 ~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIda 421 (717)
T KOG1048|consen 343 ILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDA 421 (717)
T ss_pred HHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHH
Confidence 999999887777776654 45555555433211 00000 001566667777777776555555544433 44454
Q ss_pred HHHhhc--------------------------------------------------------------------------
Q 015851 212 LVELLE-------------------------------------------------------------------------- 217 (399)
Q Consensus 212 L~~ll~-------------------------------------------------------------------------- 217 (399)
|+..+.
T Consensus 422 L~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~ 501 (717)
T KOG1048|consen 422 LLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPI 501 (717)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCC
Confidence 444332
Q ss_pred ----------------------------CCCHHHHHHHHHHHHHhhcCChhhH----HH-HHhcCCHHHHHHhhcCCCHH
Q 015851 218 ----------------------------FTDTKVQRAAAGALRTLAFKNDENK----NQ-IVECNALPTLILMLRSEDSA 264 (399)
Q Consensus 218 ----------------------------~~~~~v~~~a~~~L~~L~~~~~~~~----~~-~~~~~~~~~L~~ll~~~~~~ 264 (399)
+.++.+.++++++|-||+.+..... .. +.+..++|.|+.+|+.++..
T Consensus 502 pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~ 581 (717)
T KOG1048|consen 502 PERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSD 581 (717)
T ss_pred cccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCch
Confidence 1145667888888888887544322 22 35678899999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC------ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 015851 265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (399)
Q Consensus 265 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L 338 (399)
+...++.+|.|++.+ ..+ +.++..++++.|++.|... +.++...+|.+|.|+...+..+.+.+.+.+.++.|
T Consensus 582 vv~s~a~~LrNls~d-~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 582 VVRSAAGALRNLSRD-IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKL 659 (717)
T ss_pred HHHHHHHHHhhhccC-chh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHH
Confidence 999999999999864 444 5566689999999999743 25788889999999998888999999999999999
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHhhccC
Q 015851 339 IEMLQS-PDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 339 ~~ll~~-~~~~v~~~a~~~L~~l~~~~ 364 (399)
+-+..+ .++.+.++|...|..|=...
T Consensus 660 ~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 660 RLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999976 46688888888888776443
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.55 E-value=1.9e-13 Score=105.96 Aligned_cols=119 Identities=28% Similarity=0.409 Sum_probs=110.8
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 244 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
.+++.|+++.++.++.+++..++..++++|++++...+.....+.+.|+++.++++|.++++.++..++++|+|++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46788999999999999999999999999999998778888899999999999999999999999999999999998766
Q ss_pred hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 324 ~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
.....+.+.|+++.|++++.+.+..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 778888899999999999999999999999999999874
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.55 E-value=5.5e-12 Score=121.29 Aligned_cols=266 Identities=20% Similarity=0.240 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 015851 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~ 154 (399)
+.+.-..++.+|..+......... ..+..+.|...|.++++ .+|..+++.+.++. .+....+.+.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 555566788888888775333222 55678889999998877 89999999999999 4445566777
Q ss_pred hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (399)
Q Consensus 155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (399)
+.+.++.++..+.+.+. ++...+..+|.+++...+.. ..+...+.++.|..++..++..+|..+..++.++
T Consensus 117 ~~~l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDL--------SVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred CccHHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 89999999999988877 89999999999999655444 4466778899999999998889999999999999
Q ss_pred hcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--Ch---HH-H
Q 015851 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CS---ES-Q 308 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~---~v-~ 308 (399)
+..+++....+.+.|+++.++..+.++|.-++.+++.+|..++. .+.+...+.+.|+++.|..++... ++ .+ .
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 98888889899999999999999999999999999999999998 577788999999999999999743 22 11 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.......++++...+..... ....++..+.+++.+.|+..+..|..+++.++.....
T Consensus 267 ~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred hhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 22335667777543322211 1134566777788889999999999999999966553
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.55 E-value=2.3e-13 Score=105.49 Aligned_cols=118 Identities=36% Similarity=0.504 Sum_probs=110.3
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
+.+.|+++.+++++.++++.++..++++|++++.+.++....+.+.|+++.++.++.++++.++..++++|++++...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999997789999999999999999999999999999999999999987767
Q ss_pred HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
....+...|+++.+++++...+..+++.++++|.++++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 77788899999999999999999999999999999873
No 24
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=1.7e-12 Score=114.81 Aligned_cols=243 Identities=16% Similarity=0.108 Sum_probs=180.1
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
+...-++.|...+ .+++..+|..|++.|..+.. ...++.+..++.+++. .+|..++
T Consensus 20 ~~~~~~~~L~~~L--~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~------------~vR~~A~ 75 (280)
T PRK09687 20 CKKLNDDELFRLL--DDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP------------IERDIGA 75 (280)
T ss_pred HhhccHHHHHHHH--hCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH------------HHHHHHH
Confidence 4444556666666 46678899999999987753 2235667778877766 8999999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
++|+.+...... ....++.|..++..+.+. .++..++.+|++++...... ....+..+...+.
T Consensus 76 ~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~-------~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~ 138 (280)
T PRK09687 76 DILSQLGMAKRC-----QDNVFNILNNLALEDKSA-------CVRASAINATGHRCKKNPLY-----SPKIVEQSQITAF 138 (280)
T ss_pred HHHHhcCCCccc-----hHHHHHHHHHHHhcCCCH-------HHHHHHHHHHhccccccccc-----chHHHHHHHHHhh
Confidence 999999843322 112567777775444433 89999999999997433211 1224555777788
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
++++.+|..++++|+.+.. + ..++.|+.++.++++.||..|+.+|+.+...++ .+++.|+
T Consensus 139 D~~~~VR~~a~~aLg~~~~--~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~ 198 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND--E---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFV 198 (280)
T ss_pred CCCHHHHHHHHHHHhccCC--H---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHH
Confidence 8999999999999987653 2 368999999999999999999999999943323 2477899
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHh
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII 377 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 377 (399)
..|.+.+..++..|+++|+.+- ++ .++|.|++.+.+++ ++..++.+|+++... ..+|.+..++.
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---~a~p~L~~l~~ 262 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK---TLLPVLDTLLY 262 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---hHHHHHHHHHh
Confidence 9999999999999999999863 22 35899999998766 677888888888864 45777666553
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.48 E-value=9.1e-12 Score=110.64 Aligned_cols=291 Identities=16% Similarity=0.134 Sum_probs=209.5
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.++++.|.+..+ ++|.++..+..++|+|++.+ .++|..+.+.||-..++..|+..-..- .+.+.+.-..+..
T Consensus 86 a~~le~Lrq~ps--S~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d-----~~ane~~~~v~~g 158 (604)
T KOG4500|consen 86 AEALELLRQTPS--SPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKD-----NPANEEYSAVAFG 158 (604)
T ss_pred HHHHHHHHhCCC--CCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccC-----CccHHHHHHHHHH
Confidence 456666777663 44778899999999999996 999999999999777776665421110 1123356667788
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCcc--------------------------cc------------ccH
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC--------------------------SR------------AVN 179 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~--------------------------~~------------~~~ 179 (399)
.|.|-. .+.+.+...++.|.++.|...+.-.-.+.. +. ...
T Consensus 159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~ 238 (604)
T KOG4500|consen 159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRE 238 (604)
T ss_pred HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhcc
Confidence 888888 889999999999999977766543211000 00 011
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-C-------CHHHHHHHHHHHHHhhcCChhhHHHHHhcC-C
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-T-------DTKVQRAAAGALRTLAFKNDENKNQIVECN-A 250 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~-~ 250 (399)
++.+.+..+|...+ .++.++-.+.+.|.+..++++++. . .......++....-|..+ ++..+.+...+ +
T Consensus 239 d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG-DeSMq~L~~~p~~ 316 (604)
T KOG4500|consen 239 DIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG-DESMQKLHADPQF 316 (604)
T ss_pred chhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-chHHHHHhcCcHH
Confidence 34444555555555 455566667777888888887765 1 123445566666666664 45555555544 8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC-----CChHHHHHHHHHHHHhhccChhh
Q 015851 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDC 325 (399)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~ 325 (399)
+..+.+++.+++......+.-+++|+++. +.....+++.+++..|+++|.. ++.+.+..++.+|.|+.- ...+
T Consensus 317 l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~n 394 (604)
T KOG4500|consen 317 LDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSN 394 (604)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCc
Confidence 99999999999999999999999999986 4556788899999999999853 456788888999999984 4578
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 326 ~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
+..+...|+.+.++..++...|.+...-...++.+.
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 889999999999999998877777766666665544
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=7.7e-11 Score=106.23 Aligned_cols=287 Identities=14% Similarity=0.156 Sum_probs=213.4
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
.+.+++|.++. +.++++.+...+..|.|++.+...|..++..|.+|.|..+|.++.. ..-|+..
T Consensus 344 ~~iveKL~klf--p~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--------------~~iA~~~ 407 (791)
T KOG1222|consen 344 NGIVEKLLKLF--PIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--------------HGIALNM 407 (791)
T ss_pred ccHHHHHHHhc--CCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--------------chhhhhh
Confidence 44566666666 5678889999999999999999999999999999999999987654 2358899
Q ss_pred HHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccc-----------------------cHHHHH--------HHHHH
Q 015851 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA-----------------------VNSVIR--------RAADA 188 (399)
Q Consensus 140 L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~-----------------------~~~~~~--------~a~~~ 188 (399)
|..++.+...+..+....+++.+++.+-.......... ..-+.+ .....
T Consensus 408 lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~ 487 (791)
T KOG1222|consen 408 LYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKV 487 (791)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHH
Confidence 99999888888888888899998887766544321100 000000 12235
Q ss_pred HHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHH
Q 015851 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAI 265 (399)
Q Consensus 189 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v 265 (399)
+.|++++....+.++... +..|...++..+ ++....++++++||....-+....+-+...+|.+-..|... ..++
T Consensus 488 vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddL 565 (791)
T KOG1222|consen 488 VRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDL 565 (791)
T ss_pred HHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence 556665555555555433 555555555544 66778889999999985556666666788999999988764 4467
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChhhHHHHH-hcCCHHHHHHhh
Q 015851 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEML 342 (399)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~g~v~~L~~ll 342 (399)
.....-+++.++.. ..+...+..+++++.++++|+. .+.+......++...+..+ +..++.++ +...-..++.++
T Consensus 566 vL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 566 VLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLM 643 (791)
T ss_pred hhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHH
Confidence 77788888888854 5666667788999999999984 4557888888888888765 55555555 466667899999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCC
Q 015851 343 QSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++.+.++|+.+-.+|--++.++.+
T Consensus 644 HDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 644 HDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred hcccHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999988764
No 27
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.9e-12 Score=119.28 Aligned_cols=245 Identities=18% Similarity=0.218 Sum_probs=205.8
Q ss_pred hHHHHHHHHHHHHHHcC--ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 015851 76 DRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~ 152 (399)
|+..|.+|+.-|+.+.. +++....|--..++|.|+.+|+++.. +++..+|+++|.+|+ -.|.....
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------FDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHhhccchhhe
Confidence 77888899988888655 46666666667789999999998765 389999999999999 78999999
Q ss_pred HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (399)
+++.++||.|+..|..-... ++.++++.+|-.|++.++. .+.+.|++...+.++..-+..+++.|+.+..
T Consensus 250 vV~~~aIPvl~~kL~~Ieyi-------DvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYI-------DVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred eecccchHHHHHhhhhhhhh-------HHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877665 8999999999999987774 5788999999999999999999999999999
Q ss_pred HhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHHhhcCCCh---
Q 015851 233 TLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS--- 305 (399)
Q Consensus 233 ~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~--- 305 (399)
|+|..- ++....+.+ .+|.|..+|+..+.+..+.++-++..++. +.++..+.+..+|.+....+++...+.
T Consensus 320 N~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence 999742 233344444 59999999999999999999999999884 346667888899999999999875432
Q ss_pred -HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851 306 -ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 306 -~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~ 343 (399)
.+..-.+..+..|+++.+...+.+...++...|..++.
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 44555677888888888999999999999999999884
No 28
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.1e-11 Score=105.19 Aligned_cols=188 Identities=21% Similarity=0.230 Sum_probs=166.2
Q ss_pred chhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851 72 WLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (399)
Q Consensus 72 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~ 150 (399)
.++.+.+.+..|+.-|-.++.+-++...+...|++..++.++++.+. .+|..|+++++..+ .+|..+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~qNNP~~Q 159 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQNNPKSQ 159 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHhcCHHHH
Confidence 45677888999999999999998999999999999999999998887 89999999999999 899999
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAA 228 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~ 228 (399)
+.+++.|+++.|+..+.+..+. .++..++.+++++..+++.....+...++...|...+.+ .+...++.++
T Consensus 160 e~v~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~ 232 (342)
T KOG2160|consen 160 EQVIELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKAL 232 (342)
T ss_pred HHHHHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHH
Confidence 9999999999999999966654 788999999999999999999999999999999999999 4578899999
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
..+..|..........+...++...+..+....+.++.+.++.++..+..
T Consensus 233 ~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 233 FLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 99999998666666666667777777788888888899988888877653
No 29
>PRK09687 putative lyase; Provisional
Probab=99.39 E-value=4.2e-11 Score=105.97 Aligned_cols=212 Identities=15% Similarity=0.097 Sum_probs=161.5
Q ss_pred CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (399)
Q Consensus 104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~ 183 (399)
--++.|..+|.+.+. .+|..+.++|..+.. ...++.+..++++.+. .++.
T Consensus 23 ~~~~~L~~~L~d~d~------------~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~--------~vR~ 72 (280)
T PRK09687 23 LNDDELFRLLDDHNS------------LKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP--------IERD 72 (280)
T ss_pred ccHHHHHHHHhCCCH------------HHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH--------HHHH
Confidence 457788899988777 788899999988863 2256777777776655 8999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
.++++|+.+-..... ....++.|..+ ++++++.|+..|+.+|+++....... ...+++.+...+.+++
T Consensus 73 ~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~ 141 (280)
T PRK09687 73 IGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKS 141 (280)
T ss_pred HHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCC
Confidence 999999998742211 22456777766 67788999999999999997532211 1224566777888889
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll 342 (399)
+.||..++++|+.+. ++. .++.|+.+|.++++.++..|+.+|+.+...++ .+++.|+.++
T Consensus 142 ~~VR~~a~~aLg~~~--~~~---------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L 201 (280)
T PRK09687 142 TNVRFAVAFALSVIN--DEA---------AIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAML 201 (280)
T ss_pred HHHHHHHHHHHhccC--CHH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHh
Confidence 999999999998773 222 58999999999999999999999999842222 3467899999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhhc
Q 015851 343 QSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIIN 379 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 379 (399)
.+.++.||..|+++|+.+.. ...+|.++..+...
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~---~~av~~Li~~L~~~ 235 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKD---KRVLSVLIKELKKG 235 (280)
T ss_pred cCCChHHHHHHHHHHHccCC---hhHHHHHHHHHcCC
Confidence 99999999999999998653 34577777766443
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.37 E-value=2.9e-10 Score=104.75 Aligned_cols=271 Identities=18% Similarity=0.139 Sum_probs=192.9
Q ss_pred hhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851 74 EADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (399)
.+|..+...|+..|..+... +.........-.+..+...+.+.++. ..+.-++.+|..|...+++|..
T Consensus 112 ~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-----------~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 112 RQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-----------DYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred CCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-----------chHHHHHHHHHHHhCCchHHHH
Confidence 35677899999999998763 33211111111334555566554321 5666888999999999999999
Q ss_pred HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHH
Q 015851 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGAL 231 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L 231 (399)
+.+.++++.|+.+|...... .+++..++.++|-|+...+ ........+.++.++.+++... +++.+.++.+|
T Consensus 181 f~~~~~v~~L~~~L~~~~~~------~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l 253 (429)
T cd00256 181 FVLADGVPTLVKLLSNATLG------FQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIF 253 (429)
T ss_pred HHHccCHHHHHHHHhhcccc------HHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999865421 1899999999999995444 5555666799999999998755 88999999999
Q ss_pred HHhhcCC------hhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHH-------HHHhhcCChhH-------------
Q 015851 232 RTLAFKN------DENKNQIVECNALPTLILMLRS--EDSAIHYEAVGV-------IGNLVHSSPNI------------- 283 (399)
Q Consensus 232 ~~L~~~~------~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~-------L~~l~~~~~~~------------- 283 (399)
.|+.... ......+++.|.++.+-.+... .|+++....-.. +..++. .+++
T Consensus 254 ~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~lts-fD~Y~~El~sg~L~WSp 332 (429)
T cd00256 254 RNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSS-FDEYKSELRSGRLHWSP 332 (429)
T ss_pred HHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcCCccCCC
Confidence 9999732 1234556777666655444433 355544322211 111211 1111
Q ss_pred -----------HHHHHHCC--CcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHH
Q 015851 284 -----------KKEVLAAG--ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (399)
Q Consensus 284 -----------~~~~~~~~--~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v 349 (399)
...+-+.+ ++..|+++|. +.++.+..-||.=|+.++...|.++..+.+.|+=..+.+++.++|++|
T Consensus 333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V 412 (429)
T cd00256 333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV 412 (429)
T ss_pred CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence 12222322 5788899995 566777888999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 015851 350 REMSAFALGRLAQV 363 (399)
Q Consensus 350 ~~~a~~~L~~l~~~ 363 (399)
+..|..|+..+.-+
T Consensus 413 r~eAL~avQklm~~ 426 (429)
T cd00256 413 RYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987543
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.1e-09 Score=108.87 Aligned_cols=304 Identities=18% Similarity=0.158 Sum_probs=204.7
Q ss_pred chHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCc
Q 015851 49 SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP 127 (399)
Q Consensus 49 ~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~ 127 (399)
.+..+...+..|.++..+...+.. .|...-..++.+|..++.. |....... ..++..-++...+.+.
T Consensus 194 ~~~~~~~~~llP~~l~vl~~~i~~--~d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l--------- 261 (1075)
T KOG2171|consen 194 KSEVDKFRDLLPSLLNVLQEVIQD--GDDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKEL--------- 261 (1075)
T ss_pred hHHHHHHHHHhHHHHHHhHhhhhc--cchHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccc---------
Confidence 344445556777777777777743 3333456788889888884 55443322 2345566666665443
Q ss_pred chHHHHHHHHHHHHHhcCC-hhhHHHHHh--cCcHHHHHHHHhccccC--------ccccccHHHHHHHHHHHHHHhhcC
Q 015851 128 FEHEVEKGSAFALGLLAVK-PEHQQLIVD--NGALSHLVNLLKRHMDS--------NCSRAVNSVIRRAADAITNLAHEN 196 (399)
Q Consensus 128 ~~~~~~~~a~~~L~~l~~~-~~~~~~i~~--~~~i~~L~~~L~~~~~~--------~~~~~~~~~~~~a~~~L~~l~~~~ 196 (399)
+..+|..|+.+|..++.+ |...+.-.. ...++.++.++....++ ...+....--..+..+|-.++.+-
T Consensus 262 -~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L 340 (1075)
T KOG2171|consen 262 -ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL 340 (1075)
T ss_pred -cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC
Confidence 458999999999999944 333332222 22455555555433222 000000123455666777777543
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (399)
Q Consensus 197 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (399)
+.. .+-.-.++.+-.++.+.++.-|.+++.+|+.++.+..+.....+. .+++..+..|+++++.||..|+.+++.+
T Consensus 341 ~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 341 GGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred Chh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 321 122345677778899999999999999999999877666555444 4888999999999999999999999999
Q ss_pred hcCChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHH-HHHHhhCCCCHHHHHHH
Q 015851 277 VHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD-CKVHIVQRGAVR-PLIEMLQSPDVQLREMS 353 (399)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~-~L~~ll~~~~~~v~~~a 353 (399)
+.+-....+.-...-+++.|+..+.+ .+++++.+|+.++-|+++..+. ....+. .+++. .+.-++.++.+.+++.+
T Consensus 417 stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 417 STDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred hhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHH
Confidence 97655555555666788899998875 5669999999999999865432 222222 34555 45555578899999999
Q ss_pred HHHHHHhhccCCCCcch
Q 015851 354 AFALGRLAQVITVSVLP 370 (399)
Q Consensus 354 ~~~L~~l~~~~~~~~~~ 370 (399)
+.+|+..|.....++.|
T Consensus 496 vtaIasvA~AA~~~F~p 512 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKFIP 512 (1075)
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 99999999999886443
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5.1e-10 Score=111.08 Aligned_cols=315 Identities=16% Similarity=0.162 Sum_probs=213.8
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
.||.+++.|.... +++++..|+-|+.+|..+.....+...-.-..+.+.|.+.+.+++. .+|..++
T Consensus 115 ~WPell~~L~q~~--~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~------------~vr~~a~ 180 (1075)
T KOG2171|consen 115 KWPELLQFLFQST--KSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS------------PVRVAAV 180 (1075)
T ss_pred chHHHHHHHHHHh--cCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc------------hHHHHHH
Confidence 5899999998876 5778889999999999998753322211111345556666666555 4889999
Q ss_pred HHHHHhc-CC---hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851 138 FALGLLA-VK---PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (399)
Q Consensus 138 ~~L~~l~-~~---~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (399)
++++.++ .. ..-+..+.. .+|.++..+....+..+. +....++.+|..+....+..-.... ..++...+
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~----~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l 253 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDD----DAAKSALEALIELLESEPKLLRPHL-SQIIQFSL 253 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccch----HHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHH
Confidence 9999998 43 333333333 678788877765443322 4566788888888865554322121 23455666
Q ss_pred HhhcCC--CHHHHHHHHHHHHHhhcCChhhHHHHH--hcCCHHHHHHhhcCC--C--------------HHHHHHHHHHH
Q 015851 214 ELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIV--ECNALPTLILMLRSE--D--------------SAIHYEAVGVI 273 (399)
Q Consensus 214 ~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~~L~~ll~~~--~--------------~~v~~~a~~~L 273 (399)
....+. ++.+|..|+.+|..++...+...+..- -...++.++.++... | ..-...|..+|
T Consensus 254 ~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~l 333 (1075)
T KOG2171|consen 254 EIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQAL 333 (1075)
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHH
Confidence 666665 478999999999999985443333222 234567777766421 1 12456677788
Q ss_pred HHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHH
Q 015851 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (399)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a 353 (399)
-.++.+-+... +-.-+++.+-.++++.++.-|..|+.+|+-++.+..+.....++ .+++.+++.+.++++.||.+|
T Consensus 334 DrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA 409 (1075)
T KOG2171|consen 334 DRLALHLGGKQ---VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAA 409 (1075)
T ss_pred HHHHhcCChhh---ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHH
Confidence 88775533221 11224666777788999999999999999999887776665443 478999999999999999999
Q ss_pred HHHHHHhhccCCCC-------cchhHHHHHhhccccHHHHHHHHhhhHhhh
Q 015851 354 AFALGRLAQVITVS-------VLPAILIFIIINECQLEVLAFVLSEMVLLF 397 (399)
Q Consensus 354 ~~~L~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 397 (399)
+.+++.++.+-... .+|..+...+...++.++.+..-.+++..+
T Consensus 410 ~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 410 LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 99999999888763 344434444556667788888877777654
No 33
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.6e-10 Score=99.95 Aligned_cols=306 Identities=17% Similarity=0.179 Sum_probs=228.6
Q ss_pred hhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (399)
Q Consensus 56 ~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 135 (399)
-.....++.+|+..+. -++.+........|..++--.++...+.+.|++..|+.++...++ +++..
T Consensus 299 KMrrkniV~mLVKaLd--r~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------------dL~~~ 364 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALD--RSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------------DLRKA 364 (791)
T ss_pred HHHHHhHHHHHHHHHc--ccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH------------HHHHH
Confidence 3455667888888874 334555666777788887777888889999999999999988777 89999
Q ss_pred HHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (399)
.++.|.|++.+...+..++..|.+|.+..++.+.... ..++..++.++ -++..+.++.....++.++..
T Consensus 365 tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~----------~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 365 TLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH----------GIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred HHHHhhhccccccccHHHhhccchHHHHHHhCCcccc----------hhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877543 45777888888 577788889889999999887
Q ss_pred hcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851 216 LEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (399)
Q Consensus 216 l~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (399)
+-+ .+.++-...+...-||+. +..+.+.+++..++..|+.. +.+.++-+ ...+.|++.+.......++ +.+
T Consensus 434 v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fi--dyv 506 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFI--DYV 506 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHH--HHH
Confidence 654 345665566666678887 77888888998888888764 45555432 3467788765443434444 345
Q ss_pred HHHHHhhcC-CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCC-----
Q 015851 294 QPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVIT----- 365 (399)
Q Consensus 294 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~----- 365 (399)
..|...+.. .+.....++.++++|+.-.+-+-...+.+.+++|.+...+.. ...+++-..+.+++.++.+..
T Consensus 507 gdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Ll 586 (791)
T KOG1222|consen 507 GDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLL 586 (791)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHh
Confidence 666666664 445788899999999987666777788889999999999964 234466666677777776544
Q ss_pred --CCcchhHHHHHhhccccHHHHHHHHhhh
Q 015851 366 --VSVLPAILIFIIINECQLEVLAFVLSEM 393 (399)
Q Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (399)
.++++.++.++......+++..+++.-|
T Consensus 587 a~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 587 APAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 4577888887776666677666665533
No 34
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.1e-10 Score=97.91 Aligned_cols=183 Identities=19% Similarity=0.178 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
++-+..|..-|..++.+-++...++..|+...++.++++.+. ++++.|+|+|+.+++.+|..+..+.+.|++
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA--------ELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 466788888899999889999999999999999998888877 999999999999999999999999999999
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 210 PPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 210 ~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
+.|+..+.+++ ..++..|+.+++.+...++.+...+...++...|...+++ .+..++..++..++.+..........
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999998765 5788999999999999999999999999999999999998 56788999999999999766665565
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
+...++...+..+....+..+.+.+..++..+..
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6667777888888888888899888887766653
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.25 E-value=2.2e-09 Score=110.67 Aligned_cols=257 Identities=21% Similarity=0.203 Sum_probs=157.8
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L 140 (399)
..++.|...+ .++++.+|..|+..|..+. ..+.++.|...|++++. .+|..|+.+|
T Consensus 621 ~~~~~L~~~L--~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~------------~VR~~Aa~aL 676 (897)
T PRK13800 621 PSVAELAPYL--ADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAA------------AVRRAAAEGL 676 (897)
T ss_pred hhHHHHHHHh--cCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCH------------HHHHHHHHHH
Confidence 3445555656 5788899999999998764 23457888888877766 7888998888
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC------------chhHHHH----H
Q 015851 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN------------SSIKTRV----R 204 (399)
Q Consensus 141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~------------~~~~~~~----~ 204 (399)
..+..... ..+.+...|++.+. .++..++.+|..+...+ +..+... .
T Consensus 677 ~~l~~~~~---------~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 677 RELVEVLP---------PAPALRDHLGSPDP--------VVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALV 739 (897)
T ss_pred HHHHhccC---------chHHHHHHhcCCCH--------HHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 87752111 12345555554333 56666666555443111 1111000 0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (399)
..+..+.|..++.++++.+|..++.+|+.+.... ...++.|..++.++++.+|..|+.+|+.+.. +..
T Consensus 740 ~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~~- 807 (897)
T PRK13800 740 SVDDVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGC--PPD- 807 (897)
T ss_pred cccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cch-
Confidence 0111233445555556666666666665554311 1236777788888888888888888888742 211
Q ss_pred HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
....++..|.++++.+|..|+.+|..+.. ...++.|..++.+++..||..|+.+|..+. .
T Consensus 808 -------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~ 867 (897)
T PRK13800 808 -------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP--G 867 (897)
T ss_pred -------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC--C
Confidence 23557777888888888888888887631 223588999999999999999999999972 1
Q ss_pred CCCcchhHHHHHhhccccHHHHHHHHhh
Q 015851 365 TVSVLPAILIFIIINECQLEVLAFVLSE 392 (399)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (399)
+....+.+.. .+.+....|.......
T Consensus 868 ~~~a~~~L~~--al~D~d~~Vr~~A~~a 893 (897)
T PRK13800 868 DPAARDALTT--ALTDSDADVRAYARRA 893 (897)
T ss_pred CHHHHHHHHH--HHhCCCHHHHHHHHHH
Confidence 2222344332 3344444555554443
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=9.2e-10 Score=102.97 Aligned_cols=307 Identities=14% Similarity=0.121 Sum_probs=199.9
Q ss_pred hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHh----CCChHHHHhcccCCCCcccccCCCcchHH
Q 015851 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~----~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 131 (399)
..++..+|.|.+++. ++|...++-|..+|.+++.| ++.-+.-+. .-.+|.++++.+++++ .
T Consensus 124 ~~wpelLp~L~~~L~--s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp------------k 189 (885)
T KOG2023|consen 124 QHWPELLPQLCELLD--SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP------------K 189 (885)
T ss_pred ccchhHHHHHHHHhc--CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh------------h
Confidence 456889999999985 44555688999999999997 443332111 1368899999999877 7
Q ss_pred HHHHHHHHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 132 VEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 132 ~~~~a~~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
+|..|+.++...- .....-..+- .+++.+..+-.+.++ +++...|.++..|....+. +-.-.-.+++
T Consensus 190 iRs~A~~cvNq~i~~~~qal~~~iD--~Fle~lFalanD~~~--------eVRk~vC~alv~Llevr~d-kl~phl~~Iv 258 (885)
T KOG2023|consen 190 IRSHAVGCVNQFIIIQTQALYVHID--KFLEILFALANDEDP--------EVRKNVCRALVFLLEVRPD-KLVPHLDNIV 258 (885)
T ss_pred HHHHHHhhhhheeecCcHHHHHHHH--HHHHHHHHHccCCCH--------HHHHHHHHHHHHHHHhcHH-hcccchHHHH
Confidence 8889999998876 2222222211 144455555444443 9999999999999964442 2222234677
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHhhcCCC-------------------------
Q 015851 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSED------------------------- 262 (399)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~~ll~~~~------------------------- 262 (399)
..++...++.++++.-.||.....++. .+..+..+.. ...+|.|+.-+...+
T Consensus 259 eyML~~tqd~dE~VALEACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPR 337 (885)
T KOG2023|consen 259 EYMLQRTQDVDENVALEACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPR 337 (885)
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccch
Confidence 788888888899999999999999998 5555544443 356777766443211
Q ss_pred -------------------------------HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851 263 -------------------------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (399)
Q Consensus 263 -------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (399)
-.+|+..+.+|.-++.-.... +. .-++|.|-+.|.+....+++.+
T Consensus 338 fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL-~~l~PlLk~~L~~~~W~vrEag 413 (885)
T KOG2023|consen 338 FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LL-PILLPLLKEHLSSEEWKVREAG 413 (885)
T ss_pred hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HH-HHHHHHHHHHcCcchhhhhhhh
Confidence 024444444444443211111 11 0134555555667888999999
Q ss_pred HHHHHHhhccChhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC----CCC-cchhHHHHH-hhccccH
Q 015851 312 ALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TVS-VLPAILIFI-IINECQL 383 (399)
Q Consensus 312 ~~~L~~l~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~-~~~~~~~~~-~~~~~~~ 383 (399)
..+++.++++. .+.+.. ..++|.|+.+|.++.+-||...+|+|...+... +.+ +.|.+...+ .+-+...
T Consensus 414 vLAlGAIAEGc---M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK 490 (885)
T KOG2023|consen 414 VLALGAIAEGC---MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK 490 (885)
T ss_pred HHHHHHHHHHH---hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH
Confidence 99999998653 333333 246899999999999999999999999988533 223 334443333 3344556
Q ss_pred HHHHHHHhhhHhh
Q 015851 384 EVLAFVLSEMVLL 396 (399)
Q Consensus 384 ~~~~~~l~~~~~~ 396 (399)
+|..+.-++|.++
T Consensus 491 ~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 491 KVQEAACSAFATL 503 (885)
T ss_pred HHHHHHHHHHHHH
Confidence 6777766666553
No 37
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.20 E-value=3.6e-09 Score=94.34 Aligned_cols=268 Identities=19% Similarity=0.157 Sum_probs=191.2
Q ss_pred hhhHHHHHHHHHHHHHHcCC-hhHH---HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhh
Q 015851 74 EADRAAAKRATHVLAELAKN-EEVV---NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH 149 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~-~~~~---~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 149 (399)
..|..+...+.++++.++.. +... ..-+..| .|-..+.++... +...-|+++|..+...+++
T Consensus 125 r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~---~l~~~l~~~~~~-----------~~~~~~~rcLQ~ll~~~ey 190 (442)
T KOG2759|consen 125 RQDTFIVEMSFRILSKLACFGNCKMELSELDVYKG---FLKEQLQSSTNN-----------DYIQFAARCLQTLLRVDEY 190 (442)
T ss_pred cCChHHHHHHHHHHHHHHHhccccccchHHHHHHH---HHHHHHhccCCC-----------chHHHHHHHHHHHhcCcch
Confidence 44556666678888887763 2221 1111122 233334442221 5566889999999999999
Q ss_pred HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHH
Q 015851 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAA 228 (399)
Q Consensus 150 ~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~ 228 (399)
|..++.++++..++..+.+...+ +.++.+.+.+++-|+ .++...+.+...+.|+.|..++++.. ++|.+-.+
T Consensus 191 R~~~v~adg~~~l~~~l~s~~~~------~QlQYqsifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivl 263 (442)
T KOG2759|consen 191 RYAFVIADGVSLLIRILASTKCG------FQLQYQSIFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVL 263 (442)
T ss_pred hheeeecCcchhhHHHHhccCcc------hhHHHHHHHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999622221 289999999999999 56666677777799999999998865 78999999
Q ss_pred HHHHHhhcCCh------hhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHH-------hhcCChhHH---------
Q 015851 229 GALRTLAFKND------ENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGN-------LVHSSPNIK--------- 284 (399)
Q Consensus 229 ~~L~~L~~~~~------~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~-------l~~~~~~~~--------- 284 (399)
.++.|+....+ +....++..++.+.+-.+-.. .|+++....-..-.. ++. .++..
T Consensus 264 ai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsS-FDeY~sEl~sG~L~ 342 (442)
T KOG2759|consen 264 AIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSS-FDEYKSELRSGRLE 342 (442)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHhCCcC
Confidence 99999998653 344566777666665555443 455554433322222 221 11221
Q ss_pred ---------------HHHHHC--CCcHHHHHhhcCC-ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCC
Q 015851 285 ---------------KEVLAA--GALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (399)
Q Consensus 285 ---------------~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~ 346 (399)
..+.+. .++..|+++|... +|.+..-||.=|+......|+++..+.+.|+=..+.++++++|
T Consensus 343 WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d 422 (442)
T KOG2759|consen 343 WSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED 422 (442)
T ss_pred CCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC
Confidence 222222 2688999999854 4788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 015851 347 VQLREMSAFALGRLAQV 363 (399)
Q Consensus 347 ~~v~~~a~~~L~~l~~~ 363 (399)
++|+.+|..|+..|..+
T Consensus 423 ~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 423 PEVRYHALLAVQKLMVH 439 (442)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 99999999999887654
No 38
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.17 E-value=5.6e-09 Score=97.91 Aligned_cols=322 Identities=15% Similarity=0.124 Sum_probs=208.9
Q ss_pred hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 135 (399)
....+.++.|..+++..+.....+......+..++. +......+.+.+.++.|+++|+++++. .++..
T Consensus 47 ~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~-----------~~le~ 115 (678)
T KOG1293|consen 47 NIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSL-----------NVLEK 115 (678)
T ss_pred hhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchH-----------hHHHH
Confidence 455666777777775444444455555556666665 477778899999999999999988832 67778
Q ss_pred HHHHHHHhcCChhh---HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851 136 SAFALGLLAVKPEH---QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (399)
Q Consensus 136 a~~~L~~l~~~~~~---~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (399)
..+++.++...... .........++.+..++.-..+ .....-+....+++. .+..+......|....+
T Consensus 116 ~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk--------~~~~l~~~~~a~~s~-~~~hq~Il~Na~i~ekI 186 (678)
T KOG1293|consen 116 TLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELK--------YISRLDVSRAAHLSS-TKDHQLILCNAGILEKI 186 (678)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhh--------hhhhhhhhhhccccc-cchhhheeccccchhhH
Confidence 99999998833322 2223333455555555552222 444555666666663 33445555566666666
Q ss_pred HHhhcCCCHHHHHHHHHHHH---HhhcCChhhHHHH----HhcCCHHH--HHHhhcCC----------------------
Q 015851 213 VELLEFTDTKVQRAAAGALR---TLAFKNDENKNQI----VECNALPT--LILMLRSE---------------------- 261 (399)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~~----~~~~~~~~--L~~ll~~~---------------------- 261 (399)
.-++...+...|.+|+.+++ ++...++.+...+ .+.|+.+. +.++++++
T Consensus 187 ~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~ 266 (678)
T KOG1293|consen 187 NILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNY 266 (678)
T ss_pred HHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccc
Confidence 66666666777777777777 6665444333222 22333321 11111111
Q ss_pred --------------------------------------------------------------------------------
Q 015851 262 -------------------------------------------------------------------------------- 261 (399)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (399)
T Consensus 267 d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~ 346 (678)
T KOG1293|consen 267 DPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEK 346 (678)
T ss_pred cccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchh
Confidence
Q ss_pred -------------------------------------------CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851 262 -------------------------------------------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (399)
Q Consensus 262 -------------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (399)
+..++..|+-++-+++..-...+..+-+.++.++|++
T Consensus 347 ~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvq 426 (678)
T KOG1293|consen 347 YRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQ 426 (678)
T ss_pred hhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 1233444444444444332222222334568899999
Q ss_pred hhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-------cchh
Q 015851 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-------VLPA 371 (399)
Q Consensus 299 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~ 371 (399)
++..++..+...+.++|.|+.......+..++..|+++.+.+++.+.++.++..+.|+|+++..+.++. -+++
T Consensus 427 ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a 506 (678)
T KOG1293|consen 427 LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPA 506 (678)
T ss_pred HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhH
Confidence 999999999999999999999887889999999999999999999999999999999999999999874 1222
Q ss_pred HHHHHhhccccHHHHHHHHhhhHhhhc
Q 015851 372 ILIFIIINECQLEVLAFVLSEMVLLFC 398 (399)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 398 (399)
-.......+.+..|+.+++.-+=++.|
T Consensus 507 ~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 507 NLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 222225566677777777776666655
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.17 E-value=8.6e-09 Score=95.16 Aligned_cols=226 Identities=24% Similarity=0.250 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015851 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN 156 (399)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 156 (399)
...+.-++.+|..+...+++|..+.+.++++.|+.+|+.... ...++.+++-+++-++.+++..+.+...
T Consensus 158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~----------~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~ 227 (429)
T cd00256 158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATL----------GFQLQYQSIFCIWLLTFNPHAAEVLKRL 227 (429)
T ss_pred cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccc----------cHHHHHHHHHHHHHHhccHHHHHhhccc
Confidence 456778889999999999999999999999999999986442 2278999999999999888888888888
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc------hhHHHHHhcCChHHHHHhhcC---CCHHHHHHH
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRVRMEGGIPPLVELLEF---TDTKVQRAA 227 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a 227 (399)
+.++.++++++....+ .+.+.++.+|.|+..... .....++..|+ +.++..|.. .|+++....
T Consensus 228 ~~i~~l~~i~k~s~KE-------KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~DedL~edl 299 (429)
T cd00256 228 SLIQDLSDILKESTKE-------KVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDEDLTDDL 299 (429)
T ss_pred cHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcHHHHHHH
Confidence 9999999999988876 899999999999996331 12233444444 445555543 345543322
Q ss_pred H-------HHHHHhhc--------------CCh---------hhHHHHHhcC--CHHHHHHhhc-CCCHHHHHHHHHHHH
Q 015851 228 A-------GALRTLAF--------------KND---------ENKNQIVECN--ALPTLILMLR-SEDSAIHYEAVGVIG 274 (399)
Q Consensus 228 ~-------~~L~~L~~--------------~~~---------~~~~~~~~~~--~~~~L~~ll~-~~~~~v~~~a~~~L~ 274 (399)
- ..+..+++ .+| ++...+-+.+ .+..|+.+|. ++|+.+..-||.=++
T Consensus 300 ~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dig 379 (429)
T cd00256 300 KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIG 379 (429)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHH
Confidence 2 22233332 011 2334444432 3567888885 567888899999999
Q ss_pred HhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
.++...|.++..+-+-|+=..+++++.+++++++.+|+.++..+..
T Consensus 380 e~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 380 EYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999889998888889999999999999999999999999998753
No 40
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.15 E-value=5.9e-09 Score=94.01 Aligned_cols=253 Identities=23% Similarity=0.266 Sum_probs=189.1
Q ss_pred hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCcc
Q 015851 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNC 174 (399)
Q Consensus 95 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~ 174 (399)
..++.+...|++..|+.++..++.. ..+|.+|.+.|..+.. .++++.++..| +..++.+-+.....
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~e----------t~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~-- 236 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLE----------TSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPV-- 236 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcH--
Confidence 3456777889999999999988762 3678999999988763 46778888777 66666665433322
Q ss_pred ccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHH
Q 015851 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPT 253 (399)
Q Consensus 175 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~ 253 (399)
++.+..+..|.++..+++.....++..|++..++..++..+|.+.++++-+|+|++.+ ....+..+++..+-+.
T Consensus 237 -----e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EW 311 (832)
T KOG3678|consen 237 -----ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEW 311 (832)
T ss_pred -----HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhh
Confidence 8999999999999998888888899999999999999999999999999999999874 3466778899889999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC-------------------------------CcHHHHHhhcC
Q 015851 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-------------------------------ALQPVIGLLSS 302 (399)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------------------------------~l~~L~~lL~~ 302 (399)
|..+..+.|+-++.+||-+++.|+.. .+.-..+..+| -++.|+.+|++
T Consensus 312 LF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS 390 (832)
T KOG3678|consen 312 LFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDS 390 (832)
T ss_pred hhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhc
Confidence 99998888899999999999999854 33333333333 23444445544
Q ss_pred CChHHHHHHHHHHHHhhcc-Chhh-HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 303 CCSESQREAALLLGQFAAT-DSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 303 ~~~~v~~~a~~~L~~l~~~-~~~~-~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
...+.+.-+++-++.-+.- ...+ .+.+.+-|+++.|..+..+++.-....|..+|..+.+.-|-+
T Consensus 391 ~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~ 457 (832)
T KOG3678|consen 391 NRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYK 457 (832)
T ss_pred chhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChh
Confidence 3334444344333322211 1222 334567899999999999888888889999999999888754
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.13 E-value=1.1e-08 Score=105.76 Aligned_cols=229 Identities=19% Similarity=0.181 Sum_probs=152.8
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
+..++.|...+ .+++..+|..|+..|..+..... ..+.|...|.+++. .+|..++.+
T Consensus 651 ~~~~~~L~~aL--~D~d~~VR~~Aa~aL~~l~~~~~---------~~~~L~~~L~~~d~------------~VR~~A~~a 707 (897)
T PRK13800 651 PGFGPALVAAL--GDGAAAVRRAAAEGLRELVEVLP---------PAPALRDHLGSPDP------------VVRAAALDV 707 (897)
T ss_pred hhHHHHHHHHH--cCCCHHHHHHHHHHHHHHHhccC---------chHHHHHHhcCCCH------------HHHHHHHHH
Confidence 45667777777 56778899999999887743210 11234444444333 455555555
Q ss_pred HHHhcC-C------------hhhHHH----HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHH
Q 015851 140 LGLLAV-K------------PEHQQL----IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (399)
Q Consensus 140 L~~l~~-~------------~~~~~~----i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 202 (399)
|..+.. . +..|.. +...+..+.|...+.+.+. +++..++.+|..+....
T Consensus 708 L~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~--------~VR~~aa~aL~~~~~~~------ 773 (897)
T PRK13800 708 LRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR--------EVRIAVAKGLATLGAGG------ 773 (897)
T ss_pred HHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH--------HHHHHHHHHHHHhcccc------
Confidence 544321 0 001100 0011122344555555444 67777777776665321
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
...++.|..++.++++.+|..|+.+|+.+... + ..++.++..|.++++.||..|+.+|+.+. .+
T Consensus 774 ---~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~--~~- 837 (897)
T PRK13800 774 ---APAGDAVRALTGDPDPLVRAAALAALAELGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAA--AD- 837 (897)
T ss_pred ---chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc--cc-
Confidence 12367889999999999999999999988641 1 12356888899999999999999999874 12
Q ss_pred HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (399)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 359 (399)
..++.|+.+|.+++..||..|+.+|+.+. .++. ..+.|...+++.+..||..|..+|..
T Consensus 838 --------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 838 --------VAVPALVEALTDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred --------chHHHHHHHhcCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 24689999999999999999999999972 2222 25677789999999999999999863
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.12 E-value=4.3e-09 Score=95.54 Aligned_cols=212 Identities=19% Similarity=0.237 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHh------cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHH
Q 015851 131 EVEKGSAFALGLLA-VKPEHQQLIVD------NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~~~~~~~i~~------~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 203 (399)
++.++.+..+..+. .++...+.+.. .....++++++...+. -+...++..|..+....+......
T Consensus 72 d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~--------~i~~~a~~iLt~Ll~~~~~~~~~~ 143 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS--------FIQLKAAFILTSLLSQGPKRSEKL 143 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH--------HHHHHHHHHHHHHHTSTTT--HHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHcCCccccch
Confidence 88889999999988 77776666654 1257788887776644 888999999999997555433321
Q ss_pred HhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh------c-CCCHHHHHHHHHH
Q 015851 204 RMEGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML------R-SEDSAIHYEAVGV 272 (399)
Q Consensus 204 ~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll------~-~~~~~v~~~a~~~ 272 (399)
. .+.++.++..+.+ ++.+++..++.+|.+|.. .+.++..+.+.++++.+..++ . .....++.+++.+
T Consensus 144 ~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~ 221 (312)
T PF03224_consen 144 V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLC 221 (312)
T ss_dssp H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHH
Confidence 1 3455666666654 456678999999999997 799999999999999999999 2 2356899999999
Q ss_pred HHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHhhCC--CCHH
Q 015851 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS--PDVQ 348 (399)
Q Consensus 273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~--~~~~ 348 (399)
+|-++.. +.....+...+.++.|+.+++ ....++.+-+..++.|+...++. ....++..|+++.+-.+... +|++
T Consensus 222 lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 222 LWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999975 777788888899999999998 45668999999999999976554 77778888888877777753 5787
Q ss_pred HHHHH
Q 015851 349 LREMS 353 (399)
Q Consensus 349 v~~~a 353 (399)
+....
T Consensus 301 l~edl 305 (312)
T PF03224_consen 301 LTEDL 305 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=2.3e-09 Score=97.27 Aligned_cols=204 Identities=22% Similarity=0.273 Sum_probs=147.7
Q ss_pred cHHHHHHHHhcc-ccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh------cCChHHHHHhhcCCCHHHHHHHHHH
Q 015851 158 ALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDTKVQRAAAGA 230 (399)
Q Consensus 158 ~i~~L~~~L~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (399)
+...++.+|+.. ... ++.+.++..+..+...++.....+.. ......++.++.++|..+...++..
T Consensus 56 ~~~~~l~lL~~~~~~~-------d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~i 128 (312)
T PF03224_consen 56 YASLFLNLLNKLSSND-------DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFI 128 (312)
T ss_dssp ------HHHHHH---H-------HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcH-------HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence 566777777776 433 89999999999999888766655554 1357788889999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh-----c
Q 015851 231 LRTLAFKNDENKNQIVECNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----S 301 (399)
Q Consensus 231 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~ 301 (399)
|..+....+....... .+.++.+++.+.+ ++.+++..++.+|.++.. .+..+..+.+.++++.+..++ .
T Consensus 129 Lt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 129 LTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-----
T ss_pred HHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhccc
Confidence 9999985544433322 3456667766654 455778999999999986 488899999999999999999 2
Q ss_pred --CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCCCcchh
Q 015851 302 --SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITVSVLPA 371 (399)
Q Consensus 302 --~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 371 (399)
..+..++-+++.++|.++ .+++....+...++++.|.++++ +..++|.+.+..++.|+....+..+.+.
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~ 278 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIEL 278 (312)
T ss_dssp ----HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred CCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHH
Confidence 233467788999999998 46888889999899999999996 5678899999999999999888654443
No 44
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=9e-09 Score=100.88 Aligned_cols=247 Identities=17% Similarity=0.124 Sum_probs=190.9
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
|..+|+...+|- ..-.|.+|+..|+.... ++........-|+.|..++||+++-. ++|.--+-
T Consensus 471 PeQLPiVLQVLL----SQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~------------ELrpiLVF 534 (1387)
T KOG1517|consen 471 PEQLPIVLQVLL----SQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR------------ELRPILVF 534 (1387)
T ss_pred hHhcchHHHHHH----HHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH------------hhhhhHHH
Confidence 344554444431 23457788998888877 68888878888999999999998776 77777777
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
+-+.+- -++.++..+++.++-.++++.|......+. +=+..++.+|..++...+..+....+.+.+...++.|.
T Consensus 535 IWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~-----EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~ln 609 (1387)
T KOG1517|consen 535 IWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPP-----EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLN 609 (1387)
T ss_pred HHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCH-----HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhc
Confidence 776655 789999999998888888888887322221 66778999999999888888888888999999999999
Q ss_pred CC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC----ChhHHHHH-----
Q 015851 218 FT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS----SPNIKKEV----- 287 (399)
Q Consensus 218 ~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~----- 287 (399)
++ .+-++..++-+|+.|-..+++.+-.-...++.+.|+.+|.++-++||..|+.+|+.+..+ .++....+
T Consensus 610 d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~ 689 (1387)
T KOG1517|consen 610 DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID 689 (1387)
T ss_pred CCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc
Confidence 85 688999999999999998777777777788999999999999999999999999998864 22222211
Q ss_pred -------HHCCCc---HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHH
Q 015851 288 -------LAAGAL---QPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (399)
Q Consensus 288 -------~~~~~l---~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 327 (399)
++..+. ..++.+++..++-++.+.+.+|..+..+...+..
T Consensus 690 l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 690 LDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred chhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 111122 3667778888999999999999988865444433
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.7e-08 Score=97.00 Aligned_cols=216 Identities=20% Similarity=0.203 Sum_probs=155.2
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a 136 (399)
.+..++|.|..+++ .+.+.++...|+++|.+|+.- |.....+++++.||.|++-|..-..- ++-+++
T Consensus 208 pv~slvp~Lv~LL~-~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi-----------DvAEQ~ 275 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLS-HEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI-----------DVAEQS 275 (1051)
T ss_pred cHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh-----------HHHHHH
Confidence 45667888888776 345688999999999999995 99999999999999999866543321 788899
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-hHHHHHhcCChHHHHHh
Q 015851 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 137 ~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~l 215 (399)
+.+|..++. ..-..+.++|++...+.+|.-... .+++.|+.+-.|+|..-.. .-..+ ...+|.|..+
T Consensus 276 LqALE~iSR--~H~~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~l 343 (1051)
T KOG0168|consen 276 LQALEKISR--RHPKAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPL 343 (1051)
T ss_pred HHHHHHHHh--hccHHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHH
Confidence 999999992 223567889999999999987776 8999999999999963221 11223 3569999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 216 LEFTDTKVQRAAAGALRTLAF---KNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
|+..+....+.++-++..++. +.++..++++..|.+....+++.-.. ..+....++.+..++.+++-....+.
T Consensus 344 Ls~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~ 423 (1051)
T KOG0168|consen 344 LSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL 423 (1051)
T ss_pred HhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH
Confidence 999999999999999988885 34566677888888888888776432 12333334444444443333333333
Q ss_pred HCCCcHHHH
Q 015851 289 AAGALQPVI 297 (399)
Q Consensus 289 ~~~~l~~L~ 297 (399)
..++...|.
T Consensus 424 k~~I~~~L~ 432 (1051)
T KOG0168|consen 424 KLDIADTLK 432 (1051)
T ss_pred HhhHHHHHH
Confidence 333333333
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.98 E-value=3.5e-08 Score=96.92 Aligned_cols=247 Identities=24% Similarity=0.265 Sum_probs=152.8
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~ 151 (399)
.++++.+|..|+.+|+++. +++....+ ++.+.+++.++++ .+|+.|+.++.++. .+|+.-.
T Consensus 89 ~~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~------------~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSP------------YVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSH------------HHHHHHHHHHHHHHHHCHCCHH
T ss_pred cCCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCch------------HHHHHHHHHHHHHhccCHHHHH
Confidence 4567889999999999987 45544443 7888899998776 89999999999999 6666543
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (399)
.. .++.+.+++.+.+. .++..++.++..+ ..++.... -.-...++.|..++...++-.+..+++.|
T Consensus 151 ---~~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l 216 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLL 216 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred ---HH-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 22 58888899866654 7888899998888 22222111 11123345555555677777788888887
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (399)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (399)
..++...+..... ...++.+..++++.++.+...++.++..+... +. .-..+++.|..++.++++.++-.+
T Consensus 217 ~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 217 RRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp TTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhH
Confidence 7777643333311 23455566666666667777777777666532 22 222346666667766666677667
Q ss_pred HHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 312 ~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+..|..++... ...+. .....+..+..+++..++..+...|..++...+
T Consensus 288 L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 288 LDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp HHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 76766666433 11111 111122222235566666666666666665443
No 47
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.97 E-value=6.5e-08 Score=86.53 Aligned_cols=228 Identities=21% Similarity=0.243 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 015851 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 154 (399)
.+......|.+||..+...+++|..++..+++..++..+.+... +..++.+.+.+++-|+.+|...+.+.
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~----------~~QlQYqsifciWlLtFn~~~ae~~~ 238 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKC----------GFQLQYQSIFCIWLLTFNPHAAEKLK 238 (442)
T ss_pred CCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCc----------chhHHHHHHHHHHHhhcCHHHHHHHh
Confidence 44556778999999999999999999999999999998853222 23899999999999999999999998
Q ss_pred hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc------hhHHHHHhcCChHHHHHhhcC---CCHHHHH
Q 015851 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRVRMEGGIPPLVELLEF---TDTKVQR 225 (399)
Q Consensus 155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~---~~~~v~~ 225 (399)
..+.++.|..+++....+ .+.+.++.++.|++...+ ....... .+.++..++.|.. .|+++..
T Consensus 239 ~~~li~~L~~Ivk~~~KE-------KV~Rivlai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~rkysDEDL~~ 310 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKE-------KVTRIVLAIFRNLLDKGPDRETKKDIASQMV-LCKVLKTLQSLEERKYSDEDLVD 310 (442)
T ss_pred hccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCchhhHHHHHHHHHH-hcCchHHHHHHHhcCCCcHHHHH
Confidence 899999999999988776 888999999999996553 1222223 3445555555543 3444433
Q ss_pred HHH-------HHHHHhhcC--------------Ch---------hhHHHHHh--cCCHHHHHHhhcCC-CHHHHHHHHHH
Q 015851 226 AAA-------GALRTLAFK--------------ND---------ENKNQIVE--CNALPTLILMLRSE-DSAIHYEAVGV 272 (399)
Q Consensus 226 ~a~-------~~L~~L~~~--------------~~---------~~~~~~~~--~~~~~~L~~ll~~~-~~~v~~~a~~~ 272 (399)
..- .-.-.|++. +| ++...+-+ ..++..|+++|+.+ ||.+..-||.-
T Consensus 311 di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~D 390 (442)
T KOG2759|consen 311 DIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhh
Confidence 221 122223320 11 13333333 23577789999865 58889999999
Q ss_pred HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
++...+..|+++..+.+.|+=..++++|++++++|+-+|+.++..+..
T Consensus 391 Ige~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 391 IGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988764
No 48
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.97 E-value=4.3e-08 Score=92.12 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
..+...+.+|+-++.+++..-...+..+-...+...|++++..++..+...++++|.|+.......+..++..|+++.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34677888888888888864344444455567889999999999999999999999999987778889999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCC-HHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA-VRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~-v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+++.+.++.++..+.|+|.++.-.+++.++......+ ...+..+..++++.|++.+...|+|+..+..
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 9999999999999999999999766655554444333 3556667789999999999999999998854
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1e-07 Score=91.17 Aligned_cols=204 Identities=18% Similarity=0.248 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc------h------
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------S------ 198 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~------ 198 (399)
+=|+.|++.|..++ ..+|..+... +++++++.|+.+..++ ++...++.++.++..+++ .
T Consensus 38 eDRR~A~rgLKa~s--rkYR~~Vga~-Gmk~li~vL~~D~~D~------E~ik~~LdTl~il~~~dd~~~v~dds~qsdd 108 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFS--RKYREEVGAQ-GMKPLIQVLQRDYMDP------EIIKYALDTLLILTSHDDSPEVMDDSTQSDD 108 (970)
T ss_pred hhHHHHHHHHHHHH--HHHHHHHHHc-ccHHHHHHHhhccCCH------HHHHHHHHHHHHHHhcCcchhhcccchhhhH
Confidence 56889999999998 4566665544 6999999999877655 899999999999997553 1
Q ss_pred ----hH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHH
Q 015851 199 ----IK-TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIV-ECNALPTLILMLRSEDSAIHYEAVG 271 (399)
Q Consensus 199 ----~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~ 271 (399)
+. ..+...+.|..++..+...|..||..+...|.++...-+ +.+..+. ..-+|..|+.+|.+..+.+|-.++.
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 11 233345789999999999999999999999999987544 3444444 3678999999999999999999999
Q ss_pred HHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC----ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 272 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~ 343 (399)
.|+.++.+++...+.+.-.+++..|+.++... ..-|.+.++..|.|+...+..++..+.+.+.+|.|.++|.
T Consensus 189 lL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 189 LLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLS 264 (970)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcC
Confidence 99999998888777777789999999999743 2357788999999999888889999999999999998885
No 50
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=4.7e-08 Score=91.82 Aligned_cols=283 Identities=15% Similarity=0.169 Sum_probs=177.4
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
.-++|.+.++.+ ...+.+|..|+.++....-.....-.+.-...+..+..+-.++++ ++|.+.+.+
T Consensus 173 ~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~------------eVRk~vC~a 238 (885)
T KOG2023|consen 173 NIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDP------------EVRKNVCRA 238 (885)
T ss_pred HHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCH------------HHHHHHHHH
Confidence 335555555553 347889999999998765432111112222356667776655555 899999999
Q ss_pred HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhh
Q 015851 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELL 216 (399)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll 216 (399)
|..|. ..++ +-.-.=.++++++++..++.++ ++...||.....++. .+-.+..+.. ...+|.|+.-+
T Consensus 239 lv~Llevr~d-kl~phl~~IveyML~~tqd~dE--------~VALEACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 239 LVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDE--------NVALEACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHhcHH-hcccchHHHHHHHHHHccCcch--------hHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccC
Confidence 99998 3332 1111123477777777777766 788889999999994 4444443332 25667666543
Q ss_pred cCC--------------------------------------------------------CHHHHHHHHHHHHHhhcCChh
Q 015851 217 EFT--------------------------------------------------------DTKVQRAAAGALRTLAFKNDE 240 (399)
Q Consensus 217 ~~~--------------------------------------------------------~~~v~~~a~~~L~~L~~~~~~ 240 (399)
..+ +..+|.-.+.+|..|+. -
T Consensus 309 ~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan---v 385 (885)
T KOG2023|consen 309 VYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN---V 385 (885)
T ss_pred ccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH---h
Confidence 211 02334434444444442 1
Q ss_pred hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC--CCcHHHHHhhcCCChHHHHHHHHHHHHh
Q 015851 241 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSSCCSESQREAALLLGQF 318 (399)
Q Consensus 241 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l 318 (399)
....+... .+|.|-..|.+++-.+++.+.-+++.++.+.-. -++.+ ..++.|+++|.+..+-+|.-.||+|+..
T Consensus 386 f~~elL~~-l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRy 461 (885)
T KOG2023|consen 386 FGDELLPI-LLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRY 461 (885)
T ss_pred hHHHHHHH-HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhh
Confidence 12222222 355555566677778999999999999865322 22222 3678889999999999999999999988
Q ss_pred hccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHH
Q 015851 319 AATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILI 374 (399)
Q Consensus 319 ~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 374 (399)
+..- .+.+..+... ++..|++.+-+++..|+++|+.+...+-++.....+|.+-.
T Consensus 462 s~wv~~~~~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~ 517 (885)
T KOG2023|consen 462 SKWVVQDSRDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY 517 (885)
T ss_pred hhhHhcCChHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 7431 1122222221 23444455557899999999999999999999876665433
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.88 E-value=1.4e-07 Score=92.62 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851 74 EADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (399)
+.+...+.-+--.+..+... ++... + +++.+.+=|.++++ .+|..|+++|++++ +++..+.
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~-l----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~ 114 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLI-L----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP 114 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHH-H----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHH-H----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH
Confidence 45666677767777777764 55222 2 36666666666655 78889999999998 3444433
Q ss_pred HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (399)
.++.+.+++.+.++ .++..|+.++..+...++.. +... .++.+..++.+.++.++..|+.++.
T Consensus 115 -----l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~ 177 (526)
T PF01602_consen 115 -----LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLS 177 (526)
T ss_dssp -----HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHH
Confidence 46788888887766 89999999999999776652 2223 6889999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHH
Q 015851 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (399)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 312 (399)
.+ ..++.....+. ...++.|.+++...++-++..++.++..++...+..... ..+++.+..++++.++.+..+++
T Consensus 178 ~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~ 252 (526)
T PF01602_consen 178 EI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAI 252 (526)
T ss_dssp HH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHH
Confidence 99 22333222111 224566666677889999999999999998654443311 34688889999988899999999
Q ss_pred HHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++..+... +. .-..+++.|..++.++++.++..+..+|..++...+.
T Consensus 253 ~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 253 RLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred HHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence 999988643 33 3344688999999999999999999999999988843
No 52
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.7e-07 Score=89.50 Aligned_cols=304 Identities=17% Similarity=0.160 Sum_probs=200.6
Q ss_pred hhhhhhccccCCCCCchHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHH-HHHhCCChHHHHh
Q 015851 34 MQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVN-WIVEGGAVPALVK 111 (399)
Q Consensus 34 ~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~g~l~~L~~ 111 (399)
.++..+.+....|.+.||.. .......++-.+.......+.+..+|..|+.+|.|-..- ..+.. ..-..-++...++
T Consensus 146 ~k~~slealGyice~i~pev-l~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 146 VKESSLEALGYICEDIDPEV-LEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHccCCHHH-HHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 55666666666777888873 333334444433333433456677999999999986642 21111 2222234555666
Q ss_pred cccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHH
Q 015851 112 HLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT 190 (399)
Q Consensus 112 lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~ 190 (399)
.-.+++. +++..|..+|..+. -+-+..+.-+....+..-+..+++.++ ++..++...-+
T Consensus 225 atq~~d~------------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d--------eValQaiEFWs 284 (859)
T KOG1241|consen 225 ATQSPDE------------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND--------EVALQAIEFWS 284 (859)
T ss_pred cccCCcH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHH
Confidence 6666555 89999999999988 455555544444455666666776655 77777887777
Q ss_pred HHhhcCch----------------hHHH--HHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhhHHHH
Q 015851 191 NLAHENSS----------------IKTR--VRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQI 245 (399)
Q Consensus 191 ~l~~~~~~----------------~~~~--~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~ 245 (399)
++|...-. .... -...+++|.|+++|.. +++.....|..||.-.+.. ....+
T Consensus 285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~I 361 (859)
T KOG1241|consen 285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDI 361 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccc
Confidence 77742211 0110 1123667889998865 2356677777777766642 11223
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh
Q 015851 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (399)
Q Consensus 246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 325 (399)
+. .++|.+-.-+++++-.-+..|+.+++.+-.+.+..+-.-+..++++.++.++.+++.-++..++|+++.++...++.
T Consensus 362 v~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 362 VP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred hh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh
Confidence 33 35555555777888899999999999999876666666777899999999999888889999999999999776643
Q ss_pred HH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 326 KV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 326 ~~-~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
+- .......++.++.-+++ .|.+..+++|++.+|+..
T Consensus 441 ~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 441 IINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEA 478 (859)
T ss_pred cccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHH
Confidence 22 22234445556555554 899999999999999943
No 53
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.4e-07 Score=91.29 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 132 ~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
-|..|+..|+.+- ..|-....-..-|++|+++++|++... +++.....+-..+...++.++..+++.++-.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~ 557 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGYK 557 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCce
Confidence 3566788888877 677777777788999999999998877 7877777777777777888998888888888
Q ss_pred HHHHhhcC-C--CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 211 PLVELLEF-T--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 211 ~L~~ll~~-~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
.++..|.. . +++-+..|+.+|+.++.+.+-+++...+.+.+...+..|+++ .+-++..++-+|+.|-.+.+..+-.
T Consensus 558 YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~ 637 (1387)
T KOG1517|consen 558 YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS 637 (1387)
T ss_pred eEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc
Confidence 88888876 3 368999999999999998888899999999999999999885 6889999999999999877777666
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC----hhhHHHH-----------HhcCCH----HHHHHhhCCCCH
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVHI-----------VQRGAV----RPLIEMLQSPDV 347 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~l-----------~~~g~v----~~L~~ll~~~~~ 347 (399)
-...++...|+.+|..+-++||..|+++|+.+.... ++....+ .-...+ ..++.+++++++
T Consensus 638 G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsp 717 (1387)
T KOG1517|consen 638 GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSP 717 (1387)
T ss_pred cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccch
Confidence 678889999999999999999999999999998742 2211111 011222 267777788999
Q ss_pred HHHHHHHHHHHHhhccCCCC
Q 015851 348 QLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~ 367 (399)
-++.+.+.+|..++......
T Consensus 718 lvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 718 LVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 99999999999988766543
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=4.4e-06 Score=80.38 Aligned_cols=286 Identities=18% Similarity=0.187 Sum_probs=212.1
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChh-----------------HHHHHH-hCCChHHHHhcccCCCCccccc
Q 015851 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-----------------VVNWIV-EGGAVPALVKHLQAPPTSEADR 123 (399)
Q Consensus 62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~~~-~~g~l~~L~~lL~~~~~~~~~~ 123 (399)
-++-|...+..+-.|++....++.++.++..+.+ ..+.|+ ..+.|..+++++...+.
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF----- 136 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF----- 136 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch-----
Confidence 3444445554466788899999999999877431 122233 45889999999987666
Q ss_pred CCCcchHHHHHHHHHHHHHhc--CChhhHHHHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH
Q 015851 124 NLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK 200 (399)
Q Consensus 124 ~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 200 (399)
-+|..+...|.++- ..++.+..+.. .-+|..++.+|.+..+ .++-.++..|..+..+++.++
T Consensus 137 -------~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--------~IRNe~iLlL~eL~k~n~~IQ 201 (970)
T KOG0946|consen 137 -------HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--------PIRNEAILLLSELVKDNSSIQ 201 (970)
T ss_pred -------hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--------hhchhHHHHHHHHHccCchHH
Confidence 68889999999987 56677777654 5689999999998876 677889999999999999999
Q ss_pred HHHHhcCChHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC---CCHH---------
Q 015851 201 TRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---EDSA--------- 264 (399)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~--------- 264 (399)
..+.=.+++..|..++..+- .-|...++..|.||...+..+...+.+.+.+|.|.++|.. .+.+
T Consensus 202 KlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv 281 (970)
T KOG0946|consen 202 KLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRV 281 (970)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHH
Confidence 87777789999999997642 3578999999999999889999999999999999988863 2311
Q ss_pred -HHHHHHHHHHHhhcCC------hhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhccChhhHHHHHhcCC-
Q 015851 265 -IHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGA- 334 (399)
Q Consensus 265 -v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~- 334 (399)
-...++.++..+.... ..+...+...+++..|..++-++ ..+++.++..+++++..++..++..+.+..+
T Consensus 282 ~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p 361 (970)
T KOG0946|consen 282 QNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAP 361 (970)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCC
Confidence 1234556666665311 12334566788999999888765 4489999999999999988888887765211
Q ss_pred ---------HHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCCC
Q 015851 335 ---------VRPLIEMLQ-SPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 335 ---------v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
+-.+..+.. ...+..|.++..++..+..+...+
T Consensus 362 ~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 362 SIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred CCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 112233333 356778888888888887766653
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=98.81 E-value=4.2e-06 Score=83.43 Aligned_cols=257 Identities=17% Similarity=0.117 Sum_probs=158.6
Q ss_pred HHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851 63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (399)
Q Consensus 63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 141 (399)
++.+.+.+ .+.++.+|..|+.++.++.. +|+. +.+.|.++.|.++|.+.++ .+..+|+.+|.
T Consensus 142 ~~~lkk~L--~D~~pYVRKtAalai~Kly~~~pel---v~~~~~~~~L~~LL~D~dp------------~Vv~nAl~aL~ 204 (746)
T PTZ00429 142 LEPLRRAV--ADPDPYVRKTAAMGLGKLFHDDMQL---FYQQDFKKDLVELLNDNNP------------VVASNAAAIVC 204 (746)
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHHhhCccc---ccccchHHHHHHHhcCCCc------------cHHHHHHHHHH
Confidence 33344444 56778899999999999876 3532 3456788889998887776 68889999999
Q ss_pred Hhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (399)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (399)
.+. .++..- -...+.+..++..+...++ =.+...+.+|... .+..... ....+..+...|++.+
T Consensus 205 eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~E--------W~Qi~IL~lL~~y---~P~~~~e--~~~il~~l~~~Lq~~N 269 (746)
T PTZ00429 205 EVNDYGSEKI--ESSNEWVNRLVYHLPECNE--------WGQLYILELLAAQ---RPSDKES--AETLLTRVLPRMSHQN 269 (746)
T ss_pred HHHHhCchhh--HHHHHHHHHHHHHhhcCCh--------HHHHHHHHHHHhc---CCCCcHH--HHHHHHHHHHHhcCCC
Confidence 998 444321 2233456667777765544 3444444444332 2211111 1345777888899999
Q ss_pred HHHHHHHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851 221 TKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (399)
+.|.-.|++++.++.... ++....... ...+.++.++ +++++++..++..|.-+....+.. +... +..+.-.
T Consensus 270 ~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~l----f~~~-~~~Ff~~ 342 (746)
T PTZ00429 270 PAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNL----LRTN-LDSFYVR 342 (746)
T ss_pred HHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHH----HHHH-HHhhhcc
Confidence 999999999999998632 222222221 1335566664 567889998988887776544322 1111 2222222
Q ss_pred hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 300 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.+. +..++...+.+|..++ ++.+...++ ..|.....+.+.+.++.++.++++++...+.
T Consensus 343 ~~D-p~yIK~~KLeIL~~La--ne~Nv~~IL-----~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~ 401 (746)
T PTZ00429 343 YSD-PPFVKLEKLRLLLKLV--TPSVAPEIL-----KELAEYASGVDMVFVVEVVRAIASLAIKVDS 401 (746)
T ss_pred cCC-cHHHHHHHHHHHHHHc--CcccHHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHHhChH
Confidence 232 3357777777777776 344444433 4455666666777777777777777765553
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6.1e-07 Score=85.80 Aligned_cols=287 Identities=12% Similarity=0.108 Sum_probs=190.0
Q ss_pred hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~ 134 (399)
..+|.+++.|++...... ...++..++++|+-++.+ |+. -.-....++..+++.....++. ..+|.
T Consensus 125 n~wp~li~~lv~nv~~~~-~~~~k~~slealGyice~i~pev-l~~~sN~iLtaIv~gmrk~e~s----------~~vRL 192 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQ-ASMVKESSLEALGYICEDIDPEV-LEQQSNDILTAIVQGMRKEETS----------AAVRL 192 (859)
T ss_pred hhCHHHHHHHHHhccccc-chHHHHHHHHHHHHHHccCCHHH-HHHHHhHHHHHHHhhccccCCc----------hhHHH
Confidence 467888888776653222 225889999999999996 552 2222446777788877765552 27899
Q ss_pred HHHHHHHHhc-CChhh-HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851 135 GSAFALGLLA-VKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (399)
Q Consensus 135 ~a~~~L~~l~-~~~~~-~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (399)
.|+.+|.|-- ....+ ....-..-+++..++.-+.++. +++..++.+|..+..-.-..-........+..-
T Consensus 193 aa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~--------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfait 264 (859)
T KOG1241|consen 193 AALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE--------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAIT 264 (859)
T ss_pred HHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998865 11111 1111112234444444444444 899999999998886443333323334456666
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhhH---HHHHh---------------cCCHHHHHHhhcCC-------CHHHHH
Q 015851 213 VELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVE---------------CNALPTLILMLRSE-------DSAIHY 267 (399)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~---------------~~~~~~L~~ll~~~-------~~~v~~ 267 (399)
+.-++++++++...+.....+++...-+.. ....+ .+++|.|+.+|... +-....
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k 344 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK 344 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence 777889999999999999998885211100 11111 35678888888541 225667
Q ss_pred HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (399)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 347 (399)
.|..||.-++....+. ++. .+++.+-+-+++++..-+..|+.+++.+..+....+..-...+++|.++.++.+++-
T Consensus 345 AAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 345 AAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 7777777776432221 211 344555556778999999999999999987644555555567789999999999889
Q ss_pred HHHHHHHHHHHHhhccCCCC
Q 015851 348 QLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~ 367 (399)
-++..+.|+++.++..-+..
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred hhcchHHHHHHHHHhhchhh
Confidence 99999999999999888764
No 57
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.70 E-value=1.7e-07 Score=70.48 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=110.6
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (399)
+++..|+.-.....+. +.++....-|.|.+ .+|.....+.+..++..++..+..++..+...+.+.|+|+|.
T Consensus 16 ~Ylq~LV~efq~tt~~-------eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNI-------EAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred HHHHHHHHHHHHhccH-------HHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc
Confidence 3566666666555443 88899999999999 477777788899999999999999999999999999999998
Q ss_pred CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (399)
.+.+.+.+.+.+++|.++..++++...+...|+.++..++.+....+..+....+++.+..+
T Consensus 88 -d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 88 -DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred -ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999987665666666544444444444
No 58
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.59 E-value=8.4e-07 Score=66.82 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
+.+++...-|+|++.+|.+-..+.+.+.+..++..|...++ .+.+.+...|.|+| -++.....+...+++|
T Consensus 32 eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne--------~LvefgIgglCNlC-~d~~n~~~I~ea~g~p 102 (173)
T KOG4646|consen 32 EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE--------LLVEFGIGGLCNLC-LDKTNAKFIREALGLP 102 (173)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH--------HHHHHhHHHHHhhc-cChHHHHHHHHhcCCc
Confidence 78899999999999999999999999999999999998877 88999999999999 5666777799999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh
Q 015851 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (399)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l 257 (399)
.++..++++...+...++.++..|+.+....+..+....++..+...
T Consensus 103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 99999999999999999999999998777777777776555554443
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.7e-05 Score=67.25 Aligned_cols=266 Identities=16% Similarity=0.165 Sum_probs=177.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHH-HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWI-VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
.+.++.+|..|+..+..+... ..+... .+.-.++.+.+++...... +.|+.+|.|++.++..+.
T Consensus 13 ~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~~--------------~~a~~alVnlsq~~~l~~ 77 (353)
T KOG2973|consen 13 HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDPA--------------EPAATALVNLSQKEELRK 77 (353)
T ss_pred ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcccc--------------cHHHHHHHHHHhhHHHHH
Confidence 345677899999999998877 222222 1335778899999876651 279999999999999999
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh------cCChHHHHHhhcCCCH--HH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDT--KV 223 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~--~v 223 (399)
.+... .+..++..+.+... .+....|..|.|+++.+......... .+.+.........+-. .-
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~--------~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~ 148 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQS--------PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE 148 (353)
T ss_pred HHHHH-HHHHHHHHhcCccc--------chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc
Confidence 88876 77777777776655 67788999999999866655443322 2334444444443322 23
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCCHHH-HHHhhcCCCHHHHH-HHHHHHHHhhcCChhHHHHHHHC--CCcHHH---
Q 015851 224 QRAAAGALRTLAFKNDENKNQIVECNALPT-LILMLRSEDSAIHY-EAVGVIGNLVHSSPNIKKEVLAA--GALQPV--- 296 (399)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~-L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L--- 296 (399)
....+..+.||+. .+.++..+.+...++. -+.-+.+.+..+|. ..+++|.|.|...... ..+++. +.++.+
T Consensus 149 f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlP 226 (353)
T KOG2973|consen 149 FHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLP 226 (353)
T ss_pred hhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhh
Confidence 4566778999998 6888888887654332 12223334556654 5678888988653332 233321 112221
Q ss_pred ------------------HHhhc-----CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHH
Q 015851 297 ------------------IGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREM 352 (399)
Q Consensus 297 ------------------~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~ 352 (399)
+++|. .+++.++..-+.+|.-+|.. ..+|+.+.+.|+-+.+..+=+ .+++++++.
T Consensus 227 lagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~a 305 (353)
T KOG2973|consen 227 LAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREA 305 (353)
T ss_pred cCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence 24443 34678999999999999964 788999999888777766654 468888888
Q ss_pred HHHHHHHhhccCC
Q 015851 353 SAFALGRLAQVIT 365 (399)
Q Consensus 353 a~~~L~~l~~~~~ 365 (399)
+-.....+.+..+
T Consensus 306 ce~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 306 CEQVVQMLVRLEP 318 (353)
T ss_pred HHHHHHHHHhccc
Confidence 8888877777554
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.3e-05 Score=75.82 Aligned_cols=310 Identities=15% Similarity=0.211 Sum_probs=178.6
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
+.+.|-+.+++ +..++.+|.+|+-|...+-. .|+....| ++...++|.+.+.. +...++.
T Consensus 141 rdlapeVe~Ll--~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hG------------VL~~~l~ 201 (866)
T KOG1062|consen 141 RDLAPEVERLL--QHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHG------------VLIAGLH 201 (866)
T ss_pred HHhhHHHHHHH--hCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCc------------eeeeHHH
Confidence 33444444554 23567788888888877766 36655444 56666777766653 3346667
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccC-------ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc----
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDS-------NCSRAVNSVIRRAADAITNLAHENSSIKTRVRME---- 206 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~-------~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---- 206 (399)
.+..+| .+++.-..+.+ .++.++..|+.-... ....+..-++...++.|.-|-+.++...+.+.+-
T Consensus 202 l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqv 279 (866)
T KOG1062|consen 202 LITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQV 279 (866)
T ss_pred HHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 777777 66666666555 667777776542110 0001122677788888888887766554433210
Q ss_pred --------CC-----hHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHH----------hcCCH----HHHHHhh
Q 015851 207 --------GG-----IPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIV----------ECNAL----PTLILML 258 (399)
Q Consensus 207 --------~~-----i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~----------~~~~~----~~L~~ll 258 (399)
++ .+.+...+. .++..+|..|..+|+......+.+.+.+. +..++ ..++.+|
T Consensus 280 atntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL 359 (866)
T KOG1062|consen 280 ATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECL 359 (866)
T ss_pred HhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHh
Confidence 00 011111111 23466777777777776664333332211 01111 2477888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHH--------
Q 015851 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHI-------- 329 (399)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l-------- 329 (399)
+++|..+++.|+..+..|.. ..+... +++.|+.+|...+++.+...+.-+..+++. .|+.+.++
T Consensus 360 ~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~ 432 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK 432 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 89999999999999988873 333333 477888888888888888877777777654 23333221
Q ss_pred -----HhcCCHHHHHHhhCCC-------------------------CHHHHHHHHHHHHHhh-------------ccCCC
Q 015851 330 -----VQRGAVRPLIEMLQSP-------------------------DVQLREMSAFALGRLA-------------QVITV 366 (399)
Q Consensus 330 -----~~~g~v~~L~~ll~~~-------------------------~~~v~~~a~~~L~~l~-------------~~~~~ 366 (399)
+....+..++.++.+. .+.+.+.|.|+|+... +-++.
T Consensus 433 ~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtes 512 (866)
T KOG1062|consen 433 TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTES 512 (866)
T ss_pred hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHH
Confidence 1223444455544322 3345667888888766 12222
Q ss_pred CcchhHHHHHhhccccHHHHHHHHhhhHhhh
Q 015851 367 SVLPAILIFIIINECQLEVLAFVLSEMVLLF 397 (399)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 397 (399)
.++..+...+...+.......+.+.++..++
T Consensus 513 divd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 513 DIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3555555555555556667777777766654
No 61
>PTZ00429 beta-adaptin; Provisional
Probab=98.55 E-value=8.7e-05 Score=74.26 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=161.5
Q ss_pred hhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851 74 EADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (399)
+.|.+.+.-..-.+.+++. +++..-. .++.|.+=+.++++ .+|..|+++|+++-. ++..+.
T Consensus 79 S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~-~~i~e~ 140 (746)
T PTZ00429 79 STDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRV-SSVLEY 140 (746)
T ss_pred CCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCc-HHHHHH
Confidence 4456666666666666666 3543211 25566665665554 788888888888763 222221
Q ss_pred HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (399)
.++.+.+.+.+.+. -++..|+.++..+...++. .+...+.++.|.++|.+.++.+...|+.+|.
T Consensus 141 -----l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 141 -----TLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred -----HHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 34555666665554 8999999999999876664 3445678899999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHH
Q 015851 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (399)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 312 (399)
.+....+... -...+.+..|+..+..-++=.+...+.+|.... +...... ..++..+...|++.++.|..+|+
T Consensus 205 eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Ai 277 (746)
T PTZ00429 205 EVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAI 277 (746)
T ss_pred HHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHH
Confidence 9986444321 122344666777776666666666666664432 2211111 24678888889999999999999
Q ss_pred HHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 313 LLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 313 ~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++.++.... ++....+.. .+.++++.++ +++++++-.+...|..+....+.
T Consensus 278 k~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 278 KVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred HHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHH
Confidence 9999887432 222222221 1234555554 45777888888777777765553
No 62
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.53 E-value=9.7e-06 Score=76.94 Aligned_cols=276 Identities=18% Similarity=0.181 Sum_probs=179.5
Q ss_pred HHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHH
Q 015851 83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH 161 (399)
Q Consensus 83 a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~ 161 (399)
|+.+|.-+++++.+.+.+....++..|+.+-.-... ........++++...|++||+|+. .++..|+.+.+.|+.+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~--~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSES--DEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCccc--ccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 466777888888888888877778877776521110 000011224589999999999999 89999999999999999
Q ss_pred HHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-cCChHHHHHhhcC-----------------CCHHH
Q 015851 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELLEF-----------------TDTKV 223 (399)
Q Consensus 162 L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~-----------------~~~~v 223 (399)
++..|+...+..... ++....++.|.-++......+..+.. .+++..++..+.. .+...
T Consensus 79 l~~~Lk~~~~~~~~~---d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 155 (446)
T PF10165_consen 79 LCERLKNYSDSSQPS---DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEA 155 (446)
T ss_pred HHHHHHcccccCCCh---hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHH
Confidence 999999874321111 77777888888888666666655544 4777777765521 13456
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-------C--CCHHHHHHHHHHHHHhhcCChhHHHHH-------
Q 015851 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------S--EDSAIHYEAVGVIGNLVHSSPNIKKEV------- 287 (399)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-------~--~~~~v~~~a~~~L~~l~~~~~~~~~~~------- 287 (399)
...+++.+.|+..+.+.... -...+.++.++.++. . +......+++.+|.|+-.. ....+
T Consensus 156 l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~---~~~~l~~~~~~~ 231 (446)
T PF10165_consen 156 LSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE---CLDSLLSPKFQQ 231 (446)
T ss_pred HHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH---HHhhhhcccCCc
Confidence 78889999999986554433 011223343333322 1 2346788888888888321 11111
Q ss_pred -------HHCCCcHHHHHhhcC-----CCh---HHHHHHHHHHHHhhccChhhHHHHHh----------------cCCHH
Q 015851 288 -------LAAGALQPVIGLLSS-----CCS---ESQREAALLLGQFAATDSDCKVHIVQ----------------RGAVR 336 (399)
Q Consensus 288 -------~~~~~l~~L~~lL~~-----~~~---~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~g~v~ 336 (399)
.....+..|+.+|.. ... +...-.+.+|.+++..+...++.+.. ..+-.
T Consensus 232 ~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 232 SSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 112246666666642 111 23333556777777665555555432 24557
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 337 PLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.|++++.+..+.++..+...|..||..+.++
T Consensus 312 rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 312 RLLRLMTSPDPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhhhHHH
Confidence 8999999988999999999999999877764
No 63
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=9.5e-07 Score=81.35 Aligned_cols=260 Identities=13% Similarity=0.125 Sum_probs=186.1
Q ss_pred HHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcH
Q 015851 82 RATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL 159 (399)
Q Consensus 82 ~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i 159 (399)
.++.+|..++++ .-.|.-+.+..+.+.|+++|++++. .+.--+...+.|+. .....+..+.+.|++
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei------------mi~~~~t~~icn~vv~fsnL~~~fL~~~iI 475 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI------------MIEFPDTIDICNKVVPFSNLGAGFLEKSII 475 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc------------eeeccchhhhhheeeeccchHHHHHHhhHH
Confidence 445566667766 5677788899999999999999766 33335677778877 777889999999999
Q ss_pred HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 015851 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (399)
Q Consensus 160 ~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (399)
..++.++.+.++ .++....|++.++...+.. .+-.+....++..++++..++...++...++.|.|++...
T Consensus 476 dvl~~~v~sKDd--------aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 476 DVLVNLVMSKDD--------ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred HHHHHHhhcchh--------hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 999999997755 8999999999999975543 3445677889999999999999999999999999999732
Q ss_pred hh---hHHHHHhc----CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC-CCcHHHHHhhcC--------
Q 015851 239 DE---NKNQIVEC----NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS-------- 302 (399)
Q Consensus 239 ~~---~~~~~~~~----~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~-------- 302 (399)
.. .+..+.+. -....|+..+...+|-.....+..|.+++..++..++.+++. ..+..+..+|..
T Consensus 548 ~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~ 627 (743)
T COG5369 548 SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLS 627 (743)
T ss_pred ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCC
Confidence 22 23323222 135567777777777666677999999888766665555432 233333333210
Q ss_pred ---------------------------------------------CChHHHHHHHHHHHHhhccC---h------hhHHH
Q 015851 303 ---------------------------------------------CCSESQREAALLLGQFAATD---S------DCKVH 328 (399)
Q Consensus 303 ---------------------------------------------~~~~v~~~a~~~L~~l~~~~---~------~~~~~ 328 (399)
++.+...+..|.+.|+.... + +-.+.
T Consensus 628 pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~i 707 (743)
T COG5369 628 PGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQI 707 (743)
T ss_pred CCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHH
Confidence 01234555667776765321 1 23345
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 329 l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
+.+.|+-+.+.++..+.++.||+.+..+|.++-
T Consensus 708 L~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 708 LCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 667788888888888888999999999998763
No 64
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.47 E-value=9.2e-06 Score=77.78 Aligned_cols=316 Identities=16% Similarity=0.100 Sum_probs=173.9
Q ss_pred hccccCCCCCchHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCC
Q 015851 39 ISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (399)
Q Consensus 39 ~~~~~~l~~~~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 118 (399)
+.+...+++..|+..+.. +..+++-++.+-. ++.|.+.+.-.+.++..++.....-.......++|.++........
T Consensus 615 LkAigyliplmd~eya~y-yTrevmlil~rEf--~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrm 691 (1172)
T KOG0213|consen 615 LKAIGYLIPLMDAEYASY-YTREVMLILIREF--GSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRM 691 (1172)
T ss_pred HHHHhhccccccHHHHHH-hHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhh
Confidence 334445678888877644 4445555554444 5567777888888888888754444445556666666654433211
Q ss_pred cccccCCCcchHHH---------HHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHH
Q 015851 119 SEADRNLKPFEHEV---------EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188 (399)
Q Consensus 119 ~~~~~~~~~~~~~~---------~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~ 188 (399)
...-...++.-... .....+.+..+- ..+.+|...+ +.+..++..+...+-+. .+-+.....
T Consensus 692 A~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~--etv~ri~~~lg~~dide------rleE~lidg 763 (1172)
T KOG0213|consen 692 ALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA--ETVSRIVGRLGAADIDE------RLEERLIDG 763 (1172)
T ss_pred hccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH--HHHHHHHhccccccccH------HHHHHHHHH
Confidence 10000000000000 001112222222 2222333222 23444444443322211 111222222
Q ss_pred HHHHhhcCc-h----------------hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCH
Q 015851 189 ITNLAHENS-S----------------IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (399)
Q Consensus 189 L~~l~~~~~-~----------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 251 (399)
+.+-.++.. . .+.+-.-...+..+++.|.+.++.+|..|+..++.|+. --..+.+.-..|-+
T Consensus 764 il~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~-Vlktc~ee~~m~~l 842 (1172)
T KOG0213|consen 764 ILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAK-VLKTCGEEKLMGHL 842 (1172)
T ss_pred HHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHhccHHHHHHHh
Confidence 222111110 0 00001112345667788999999999999999998885 22333222111112
Q ss_pred -HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH
Q 015851 252 -PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (399)
Q Consensus 252 -~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (399)
-+|...|..+.+++.-..++++..|...-.-.+-.-=..+++|.|..+|++....+++++...++.++..+++....--
T Consensus 843 GvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE 922 (1172)
T KOG0213|consen 843 GVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE 922 (1172)
T ss_pred hHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH
Confidence 2466788888999998888888887632211111111257899999999999999999999999999977665321111
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 331 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
-..+.=-|+.+|++.+.++|++|...++-+++.-.+
T Consensus 923 WMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 923 WMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence 122334577888888899999999999999987664
No 65
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.42 E-value=3.3e-05 Score=67.01 Aligned_cols=229 Identities=17% Similarity=0.144 Sum_probs=158.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
+.-++.+|..|+.++.++..+++.|...... .+-..+++++++.-. ..++|.+.+-+++.++.++.+.+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg----------~~qlQY~SL~~iw~lTf~~~~aq 228 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG----------VKQLQYNSLIIIWILTFSKECAQ 228 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHhcCHHHHH
Confidence 4456778999999999999999999966644 456677787776433 12789999999999999988885
Q ss_pred HHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc--hhHHHHHhcCChHHHHHhhcC---CCHHHHH
Q 015851 152 LIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS--SIKTRVRMEGGIPPLVELLEF---TDTKVQR 225 (399)
Q Consensus 152 ~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~---~~~~v~~ 225 (399)
.+-. -..+..++++++....+ .+.+.++.++.|++...+ .+..... .+-+...++.|.. .+++++.
T Consensus 229 di~K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~ 300 (432)
T COG5231 229 DIDKMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVI 300 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHH
Confidence 5443 23677778888766554 788999999999996332 2222222 3334444555433 3344433
Q ss_pred HHHHHHHH-------hhc--------------CCh---------hhHHHHHh--cCCHHHHHHhhcCCCHH-HHHHHHHH
Q 015851 226 AAAGALRT-------LAF--------------KND---------ENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGV 272 (399)
Q Consensus 226 ~a~~~L~~-------L~~--------------~~~---------~~~~~~~~--~~~~~~L~~ll~~~~~~-v~~~a~~~ 272 (399)
..-..=.. ++. ..| .+...+.+ ..++..|.++++.+++. ....||.-
T Consensus 301 di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~D 380 (432)
T COG5231 301 DIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSD 380 (432)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhh
Confidence 22111111 110 011 23334443 34567788888877665 55668888
Q ss_pred HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
+..+.+..|+....+...|+=..++.++++++++++-+|..++..+.
T Consensus 381 i~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 381 IFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88888888999899999999999999999999999999999988765
No 66
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.41 E-value=7.8e-06 Score=74.36 Aligned_cols=161 Identities=22% Similarity=0.325 Sum_probs=137.3
Q ss_pred HHHhcCChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 015851 202 RVRMEGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 278 (399)
.+...|++..|+.++..++. .++..+.+.|-.+.. .++.+.+...| +..++.+.+. +.++.....+++|.++..
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 46667999999999999884 569999999999985 67788887765 4555555443 467899999999999999
Q ss_pred CChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHH
Q 015851 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (399)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L 357 (399)
++++..+.++..|+++.++-+.+..++.+..+++.+|+|++-+. ...++.+++..+-+.|..+-.+.|.-+|..|+-++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999998763 47788899988999999999888999999999999
Q ss_pred HHhhccCC
Q 015851 358 GRLAQVIT 365 (399)
Q Consensus 358 ~~l~~~~~ 365 (399)
..|+.+..
T Consensus 332 ~vlat~KE 339 (832)
T KOG3678|consen 332 AVLATNKE 339 (832)
T ss_pred hhhhhhhh
Confidence 99987654
No 67
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.37 E-value=5e-05 Score=70.87 Aligned_cols=284 Identities=10% Similarity=0.038 Sum_probs=173.7
Q ss_pred hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~ 134 (399)
..+|+++..+..... .++....+.+++.++++++.. |+..... ...++-.++..-.+..+ +..+|.
T Consensus 129 ~~wp~lm~~mv~nvg-~eqp~~~k~~sl~~~gy~ces~~Pe~li~~-sN~il~aiv~ga~k~et----------~~avRL 196 (858)
T COG5215 129 SLWPGLMEEMVRNVG-DEQPVSGKCESLGICGYHCESEAPEDLIQM-SNVILFAIVMGALKNET----------TSAVRL 196 (858)
T ss_pred ccchHHHHHHHHhcc-ccCchHhHHHHHHHHHHHhhccCHHHHHHH-hhHHHHHHHHhhcccCc----------hHHHHH
Confidence 356777777666543 234456788999999999985 5332222 12334444443333332 127888
Q ss_pred HHHHHHHHhcCChhhHHHHHhcC----cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 135 GSAFALGLLAVKPEHQQLIVDNG----ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~i~~~~----~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
.++.+|.+-+. ..+..+...+ +++..++.-+..+. +++..+..+|..+..-.-..-....+.-...
T Consensus 197 aaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~--------e~q~aafgCl~kim~LyY~fm~~ymE~aL~a 266 (858)
T COG5215 197 AALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDE--------ELQHAAFGCLNKIMMLYYKFMQSYMENALAA 266 (858)
T ss_pred HHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999888331 1122222222 23333333343333 8999999998888754433333233333445
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHH----------------HhcCCHHHHHHhhcC-------CCHHHHH
Q 015851 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI----------------VECNALPTLILMLRS-------EDSAIHY 267 (399)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~----------------~~~~~~~~L~~ll~~-------~~~~v~~ 267 (399)
.....+++.+.++...+......++...-+..-.. .-..++|.|+++|.. ++-.+..
T Consensus 267 lt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sm 346 (858)
T COG5215 267 LTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSM 346 (858)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhh
Confidence 55677899999999999988878885211111111 112368899999964 1235677
Q ss_pred HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (399)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 347 (399)
.|..+|.-.+.... ..+.+ .++..+-.-+++++..-++.|+.+++.+..+..+....-+-..++|.+..++.++.-
T Consensus 347 aA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l 422 (858)
T COG5215 347 AASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCL 422 (858)
T ss_pred hHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccccee
Confidence 77777776653221 12221 133444445678888999999999999986533333333334578999999988888
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 015851 348 QLREMSAFALGRLAQVITV 366 (399)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~ 366 (399)
-+...++|+++.++.+-+.
T Consensus 423 ~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 423 WVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred ehhhHHHHHHHHHHHHHHH
Confidence 8999999999999976553
No 68
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.34 E-value=0.00012 Score=63.67 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcC-cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-cC
Q 015851 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EG 207 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~-~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~ 207 (399)
+-++.-|+.++.++...++.|..+-..+ +-..++..++..-... +++...+.+++-++. ++.+.+.+-. ..
T Consensus 163 ~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~------qlQY~SL~~iw~lTf-~~~~aqdi~K~~d 235 (432)
T COG5231 163 FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVK------QLQYNSLIIIWILTF-SKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 4678899999999999999998765443 5566777777654422 899999999999994 4444432322 25
Q ss_pred ChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCh-hhHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcC---
Q 015851 208 GIPPLVELLEFTD-TKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHS--- 279 (399)
Q Consensus 208 ~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~--- 279 (399)
.+..++.+.+... +.+.+.+++.+.|++...+ .....+.-.|-+..-++.|.. .|++++...-.+=..+...
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 5667777776654 7889999999999997332 333333333433444444432 3555554333322222111
Q ss_pred ------------------Ch---------hHHHHHHHC--CCcHHHHHhhcCCChH-HHHHHHHHHHHhhccChhhHHHH
Q 015851 280 ------------------SP---------NIKKEVLAA--GALQPVIGLLSSCCSE-SQREAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 280 ------------------~~---------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~l 329 (399)
+| .+...+... .++..|.++++...+. ...-||.-|..+....|+.+..+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 01 112222222 3678888888876665 45557888888888889999999
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
...|+-..+.+++.+++++|+-.|..++..+..
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 999999999999999999999999999987653
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00014 Score=69.81 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=52.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
.+..|-.++.+.|+.++.-++-+++.+...++...... -..++++|.+.|+.+|..|+..|.-+..
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 35566677788899999999999999997666543322 4568899999999999999999988873
No 70
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.33 E-value=0.00032 Score=65.56 Aligned_cols=187 Identities=22% Similarity=0.151 Sum_probs=129.8
Q ss_pred hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHH
Q 015851 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (399)
Q Consensus 106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a 185 (399)
+..|+..|.+.+. .++..+..+|+.+-. ....+.|+.+|++.+. .++..+
T Consensus 88 ~~~L~~~L~d~~~------------~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p--------~vR~aa 137 (410)
T TIGR02270 88 LRSVLAVLQAGPE------------GLCAGIQAALGWLGG----------RQAEPWLEPLLAASEP--------PGRAIG 137 (410)
T ss_pred HHHHHHHhcCCCH------------HHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCCh--------HHHHHH
Confidence 7888899987765 688899999987652 3367888888876655 677666
Q ss_pred HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHH
Q 015851 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (399)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 265 (399)
+.++.... ....+.+..+|++.++.++..|+++|+.+-.. ..++.|...+.+.++.|
T Consensus 138 l~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 138 LAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEV 194 (410)
T ss_pred HHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHH
Confidence 66555521 22345788889999999999999999988752 35677888899999999
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHH----C------------------CCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851 266 HYEAVGVIGNLVHSSPNIKKEVLA----A------------------GALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~----~------------------~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
|..|++++..+-. +.....+.. . ..++.|..+++.+ .++..++++++.+- +
T Consensus 195 R~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg--~- 267 (410)
T TIGR02270 195 RFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA--ATRREALRAVGLVG--D- 267 (410)
T ss_pred HHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh--hhHHHHHHHHHHcC--C-
Confidence 9999999977732 222111111 1 2333444444433 36677777777653 2
Q ss_pred hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 324 ~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
...++.|+..+.+ +.++..|..++..|+=
T Consensus 268 --------p~av~~L~~~l~d--~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 268 --------VEAAPWCLEAMRE--PPWARLAGEAFSLITG 296 (410)
T ss_pred --------cchHHHHHHHhcC--cHHHHHHHHHHHHhhC
Confidence 2357888888864 3489999999998874
No 71
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.32 E-value=1.5e-06 Score=52.64 Aligned_cols=41 Identities=41% Similarity=0.741 Sum_probs=38.3
Q ss_pred ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 322 ~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
++++++.+.+.|++|.|+++++++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999974
No 72
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.31 E-value=1.4e-06 Score=52.74 Aligned_cols=40 Identities=40% Similarity=0.643 Sum_probs=37.7
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (399)
+++++..+++.|++|.|+.+|.+++++++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999997
No 73
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.28 E-value=0.00017 Score=66.49 Aligned_cols=222 Identities=18% Similarity=0.209 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
++|..+.+++..+..+++.-+.+.+.+.--.++.-|..+.... .-+++|+..+..+.......+. ...+++.
T Consensus 40 ~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~------~ER~QALkliR~~l~~~~~~~~--~~~~vvr 111 (371)
T PF14664_consen 40 EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKND------VEREQALKLIRAFLEIKKGPKE--IPRGVVR 111 (371)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCCh------HHHHHHHHHHHHHHHhcCCccc--CCHHHHH
Confidence 8999999999999988888888888887777777777665432 5667899988888854332222 3457788
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (399)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (399)
.++.+..+.+...+..++.+|..++..+|+ .+...|++..|+..+.++..++....+.++-.+.. .+..++.+...
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~ 187 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPG 187 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCC
Confidence 999999999999999999999999985554 67789999999999887766788888899988874 46666655543
Q ss_pred CCcHHHHHhhcCC-------Ch--HHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851 291 GALQPVIGLLSSC-------CS--ESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGR 359 (399)
Q Consensus 291 ~~l~~L~~lL~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 359 (399)
--++.++.-+.+. +. +.-..+..++..+... -.+.-.+.. ..++..|+..+..+++++|+.....+..
T Consensus 188 ~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 188 FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455555444322 22 2334455566666543 333333332 2578889999999999999999999998
Q ss_pred hhccCC
Q 015851 360 LAQVIT 365 (399)
Q Consensus 360 l~~~~~ 365 (399)
+-.-.+
T Consensus 267 llrik~ 272 (371)
T PF14664_consen 267 LLRIKP 272 (371)
T ss_pred HHCCCC
Confidence 875444
No 74
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.28 E-value=2.4e-05 Score=67.82 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHHHHHhhcC--chhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHH
Q 015851 178 VNSVIRRAADAITNLAHEN--SSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (399)
Q Consensus 178 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~ 253 (399)
+|+.+..++..|..+...+ ......+.. ...+..+...+.+....+...|+.++..++...........+ .++|.
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~ 98 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPP 98 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHH
Confidence 3588888999999988765 111122221 145567777788878889999999999999754444444444 37899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh---hh-HHHH
Q 015851 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS---DC-KVHI 329 (399)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~-~~~l 329 (399)
|++.+.++..-++..|..+|..++...+.. ..+ .++.+...+.+.++.+|..++..+..+....+ .. ....
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 999999999999999999999998654411 122 15667777889999999999999998876544 11 1111
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.-..+++.+..++.+++++||..|..++..+.+..++
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1244678899999999999999999999999887765
No 75
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.26 E-value=0.00011 Score=67.85 Aligned_cols=221 Identities=15% Similarity=0.131 Sum_probs=158.3
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015851 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 155 (399)
+.++|..+.++++.+..+++....+.+.++--.++.-|..+.... .=|++|.+.+..+..-+..... ..
T Consensus 38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~----------~ER~QALkliR~~l~~~~~~~~-~~ 106 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKND----------VEREQALKLIRAFLEIKKGPKE-IP 106 (371)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCCh----------HHHHHHHHHHHHHHHhcCCccc-CC
Confidence 388999999999999999999999998887767777776654431 2367899888888733322222 24
Q ss_pred cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (399)
Q Consensus 156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (399)
.|.+..++.+....++ .++..++.+|..++..+|. .+...||+..+++.+.++..++....+.++..+.
T Consensus 107 ~~vvralvaiae~~~D--------~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDD--------RLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred HHHHHHHHHHHhCCch--------HHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 5678888888888666 8999999999999988885 5778899999999998877778889999999999
Q ss_pred cCChhhHHHHHhcCCHHHHHHhhcCC-------CH--HHHHHHHHHHHHhhcCChhHHHHHHHC-CCcHHHHHhhcCCCh
Q 015851 236 FKNDENKNQIVECNALPTLILMLRSE-------DS--AIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSSCCS 305 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~ 305 (399)
. .|..+..+...--++.++.-+.+. +. +....+..++..+-.+-+......... .++..|+..|..+++
T Consensus 176 d-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~ 254 (371)
T PF14664_consen 176 D-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNP 254 (371)
T ss_pred C-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCH
Confidence 7 576666665544466665554432 22 344555666666554433332222222 478888888888888
Q ss_pred HHHHHHHHHHHHhh
Q 015851 306 ESQREAALLLGQFA 319 (399)
Q Consensus 306 ~v~~~a~~~L~~l~ 319 (399)
+++......+..+.
T Consensus 255 ~ir~~Ildll~dll 268 (371)
T PF14664_consen 255 EIRKAILDLLFDLL 268 (371)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777776665
No 76
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.22 E-value=0.00023 Score=70.36 Aligned_cols=275 Identities=23% Similarity=0.223 Sum_probs=149.8
Q ss_pred hcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhh
Q 015851 70 FSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH 149 (399)
Q Consensus 70 l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 149 (399)
+...+.|.++++.|..+++.+..+..-....--...++.|++-|.++ .+|..|.+++..++..+-.
T Consensus 577 L~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--------------iTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 577 LKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--------------ITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--------------hHHHHHHHHHHHHHhccce
Confidence 33477899999999999999877533222222234667777777643 5678899999999855422
Q ss_pred HHH-HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 015851 150 QQL-IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAA 228 (399)
Q Consensus 150 ~~~-i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 228 (399)
-.. -.-..+++.+..++.+... .++...+.++..|.......-..-....++..+..++...+-.+-..|.
T Consensus 643 i~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~ 714 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAV 714 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 211 1112367777888777655 5555566666555532211101011112233344445555566666677
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH------------------------------------------HHH
Q 015851 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDS------------------------------------------AIH 266 (399)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~------------------------------------------~v~ 266 (399)
.+|..+....+.. -.-....+++.++.+++++-- .+.
T Consensus 715 ~~L~tl~~~~ps~-l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~ 793 (1233)
T KOG1824|consen 715 AFLTTLAIIQPSS-LLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLH 793 (1233)
T ss_pred HHHHHHHhcccHH-HHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchh
Confidence 7776666533322 222233345555555544210 112
Q ss_pred HHHHHHHHH----hhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 015851 267 YEAVGVIGN----LVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (399)
Q Consensus 267 ~~a~~~L~~----l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ 340 (399)
..|...++. ++...++. .......++.-+.+ .+..++.-|...++.+-.+.+ .....++...+++
T Consensus 794 kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iie 864 (1233)
T KOG1824|consen 794 KQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIE 864 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHH
Confidence 222222221 11111100 01123333333332 233566666666666643311 1223445568889
Q ss_pred hhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHH
Q 015851 341 MLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFI 376 (399)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 376 (399)
.+++++.+++.+|..||++++...-+.++|.++...
T Consensus 865 af~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi 900 (1233)
T KOG1824|consen 865 AFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQI 900 (1233)
T ss_pred HcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHH
Confidence 999999999999999999999977777788765443
No 77
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00011 Score=68.43 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=174.9
Q ss_pred hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a 136 (399)
-..+.++|.|.+-+. ..++..|..-+.-|..+-.-|...-.-.-..+++-|..+|.++.. ++|..+
T Consensus 163 FsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~------------eVr~~~ 228 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSD------------EVRTLT 228 (675)
T ss_pred cCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcH------------HHHHHH
Confidence 346778888877664 336777777777777665544432211223567788888988776 788777
Q ss_pred HHHHHHhc----CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851 137 AFALGLLA----VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (399)
Q Consensus 137 ~~~L~~l~----~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (399)
-.+|.++- ..|...+ -...++.++.-+.++++ +++..++.-|..+..-.+. .-...-.|.+..+
T Consensus 229 ~t~l~~fL~eI~s~P~s~d---~~~~i~vlv~~l~ss~~--------~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~i 296 (675)
T KOG0212|consen 229 DTLLSEFLAEIRSSPSSMD---YDDMINVLVPHLQSSEP--------EIQLKALTWIQEFVKIPGR-DLLLYLSGILTAI 296 (675)
T ss_pred HHHHHHHHHHHhcCccccC---cccchhhccccccCCcH--------HHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhc
Confidence 77776654 3343321 13356667777776665 7888877766666643222 2223445777778
Q ss_pred HHhhcCCCHH-HHHHH---HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 213 VELLEFTDTK-VQRAA---AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 213 ~~ll~~~~~~-v~~~a---~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
+.++.+..+. ++..+ -..+..+.. .+...+.+--..++..+.+.+.++..+.+..++..+..+-...+. .-..-
T Consensus 297 Lpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h 374 (675)
T KOG0212|consen 297 LPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVH 374 (675)
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhh
Confidence 8888776653 33332 223444443 233333322234688899999999999999999999888754333 23333
Q ss_pred HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhccCC
Q 015851 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
...+.+.|+.-|++++.++...+...+.++|.. +... +..+.+.+++ .....-+...+..+++.+|---.
T Consensus 375 ~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s-~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 375 NDSIFLTLLKTLSDRSDEVVLLALSLLASICSS-SNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC-cccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence 467889999999999999999999999999964 3322 2344444444 44445566677778887775444
No 78
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00053 Score=64.33 Aligned_cols=279 Identities=11% Similarity=0.033 Sum_probs=173.8
Q ss_pred chhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh
Q 015851 72 WLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH 149 (399)
Q Consensus 72 ~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~ 149 (399)
.+.+|.+++..|..||.++.. .-.......+.-......+.+.+++. ++..+++.....+| ..-+.
T Consensus 230 tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd------------~va~qavEfWsticeEeid~ 297 (858)
T COG5215 230 TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND------------EVAIQAVEFWSTICEEEIDG 297 (858)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch------------HHHHHHHHHHHHHHHHHhhh
Confidence 356788999999999999887 34444455555556666677777776 77778888777776 21111
Q ss_pred HHHH----------------HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851 150 QQLI----------------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (399)
Q Consensus 150 ~~~i----------------~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (399)
.-.+ .-.+.+|.|+.+|.+..++. ..+.|.+...+..+|.-.++... ..+... ++..+-
T Consensus 298 ~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~-~~DdWn~smaA~sCLqlfaq~~g---d~i~~p-Vl~FvE 372 (858)
T COG5215 298 EMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY-YGDDWNPSMAASSCLQLFAQLKG---DKIMRP-VLGFVE 372 (858)
T ss_pred HHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc-cccccchhhhHHHHHHHHHHHhh---hHhHHH-HHHHHH
Confidence 1000 12347899999998743321 22345666666666666664221 122222 444445
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (399)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (399)
.-+.+++..-++.+.-+++.+..+..+.+..-+-+..+|.+...+.++.--++..++|+++.|+.+-+ ..+-..+-+
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl 449 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHL 449 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccc
Confidence 55778889999999999999998644444333445678888888887777899999999999984322 222223444
Q ss_pred HHHHHhhc---CCChHHHHHHHHHHHHhhccChhhH---HHHHh---cCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhc
Q 015851 294 QPVIGLLS---SCCSESQREAALLLGQFAATDSDCK---VHIVQ---RGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 294 ~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~---~~l~~---~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~ 362 (399)
+..++... ...+.+..+++|...|++..-++.. ..+.. ..++..|++... .++...|..+-.+|+.+..
T Consensus 450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 43333321 3566888999999999986533222 11111 122333333221 3456677777888888877
Q ss_pred cCCCCcch
Q 015851 363 VITVSVLP 370 (399)
Q Consensus 363 ~~~~~~~~ 370 (399)
-.++.+.+
T Consensus 530 ~~~d~V~~ 537 (858)
T COG5215 530 ICPDAVSD 537 (858)
T ss_pred hcchhHHH
Confidence 77765333
No 79
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.8e-05 Score=69.89 Aligned_cols=294 Identities=14% Similarity=0.065 Sum_probs=178.9
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCC-hhhHH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-PEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 151 (399)
.+.|..+|..|++.|.|++.-........-..+...+.++..+++..+++ ++..|-.+-.+ ..-+.
T Consensus 94 ~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-------------~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 94 SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-------------GAELLDRLIKDIVTESA 160 (675)
T ss_pred cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-------------HHHHHHHHHHHhccccc
Confidence 56677789999999999886433222223334566777777777765543 45555544411 10011
Q ss_pred -HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHH
Q 015851 152 -LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 230 (399)
Q Consensus 152 -~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (399)
.+.=.+++|.|-.-+...+. ..+...+.-|..|- ..|.....-.-...++.|..+|.+++++++..+-.+
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~--------~tR~flv~Wl~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~ 231 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINP--------MTRQFLVSWLYVLD-SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL 231 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHHHh-cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 12222344444444444433 56666666666665 344444333344677889999999999999888777
Q ss_pred HHHhhcCChhhHHHH-HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChH-HH
Q 015851 231 LRTLAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE-SQ 308 (399)
Q Consensus 231 L~~L~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-v~ 308 (399)
+.+.... -.+.... --...++.++.-+.++++.++..|+..+..+..-.+. .....-+|++..++..+.+..+. ++
T Consensus 232 l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~ 309 (675)
T KOG0212|consen 232 LSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIK 309 (675)
T ss_pred HHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHH
Confidence 7766641 1111112 2245788999999999999999999999888754332 23445578888888888776653 44
Q ss_pred HHHHH---HHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcc----hhHHHHH-hhcc
Q 015851 309 REAAL---LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL----PAILIFI-IINE 380 (399)
Q Consensus 309 ~~a~~---~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~-~~~~ 380 (399)
..+.. -+..++. .+.....+--...+..+.+.+.+...+.+-++..-+..+-...+++.+ +....++ .+.+
T Consensus 310 ~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd 388 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD 388 (675)
T ss_pred HHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC
Confidence 44332 2333432 233332333345678889999999999999999888888888877522 1111222 4455
Q ss_pred ccHHHHHHHHh
Q 015851 381 CQLEVLAFVLS 391 (399)
Q Consensus 381 ~~~~~~~~~l~ 391 (399)
..+++....++
T Consensus 389 ~sd~vvl~~L~ 399 (675)
T KOG0212|consen 389 RSDEVVLLALS 399 (675)
T ss_pred chhHHHHHHHH
Confidence 55565555554
No 80
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0025 Score=58.11 Aligned_cols=266 Identities=18% Similarity=0.155 Sum_probs=188.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCCh----------hhH
Q 015851 81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP----------EHQ 150 (399)
Q Consensus 81 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~----------~~~ 150 (399)
...+.-+.-++.-|+.-..+++.++++.|+++|.+.+. ++-...+..|..|++.. ..-
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt------------DI~iavvdLLqELTD~Dv~~es~egAevLi 169 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT------------DIAIAVVDLLQELTDEDVLYESEEGAEVLI 169 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc------------hhHHHHHHHHHHhhhhcccccccccHHHHH
Confidence 34566677777779998899999999999999999888 67778888888888321 234
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAA 228 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~ 228 (399)
+.+++.+.++.|++-+.+-+++.... ..=...++..+-|+....+.....+.+.|.+..|+.-+... -......+.
T Consensus 170 daLvdg~vlaLLvqnveRLdEsvkee--a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Yas 247 (536)
T KOG2734|consen 170 DALVDGQVLALLVQNVERLDESVKEE--ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYAS 247 (536)
T ss_pred HHHHhccHHHHHHHHHHHhhhcchhh--hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHH
Confidence 56678899999999988765432111 03456788889999988888777788888887777644432 345677888
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHhhc---CC------CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851 229 GALRTLAFKNDENKNQIVECNALPTLILMLR---SE------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (399)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~---~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (399)
.+|.-+...+.+++.....-.++..+++-+. .. ..+...+.-.+|+.+... +.++..+....+++...-+
T Consensus 248 EiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lm 326 (536)
T KOG2734|consen 248 EILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLM 326 (536)
T ss_pred HHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHH
Confidence 8888888866667777777888888887663 11 236677777777777654 6778889988888877777
Q ss_pred hcCCChHHHHHHHHHHHHhhccCh--hhHHHHHhcCCHHHHHHhhC-C---------CCHHHHHHHHHHHHHhhc
Q 015851 300 LSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEMLQ-S---------PDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 300 L~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~g~v~~L~~ll~-~---------~~~~v~~~a~~~L~~l~~ 362 (399)
++. ....+-.+..+|.....+++ .++..+++..++..+..+.- . ...+.-+..+..|+.+-.
T Consensus 327 lr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 327 LRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 765 33566778889998887654 56667777666655555432 1 223344555555555544
No 81
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00074 Score=65.80 Aligned_cols=250 Identities=18% Similarity=0.204 Sum_probs=139.9
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~ 151 (399)
.+.+..+.--|+-+|++++.-+-.| ...|-+.++|++.++ -+|..|+.|...+- ..|+..+
T Consensus 117 ~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~------------~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDP------------YIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred cCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCH------------HHHHHHHHHHHHHHHcCchHHH
Confidence 3455566677777777777533332 235667778887766 78889999998888 7777666
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-------------
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------------- 218 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------- 218 (399)
. +++...++|.+.+. .+....+..+..+|..++..-..+.. .++.++..|+.
T Consensus 179 ~-----f~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~ 243 (866)
T KOG1062|consen 179 H-----FVIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVH 243 (866)
T ss_pred H-----hhHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCcc
Confidence 5 44566677766665 55666777777777665544333332 44445544421
Q ss_pred --CCHHHHHHHHHHHHHhhcCChhhHHHHHhc-------------CC----HHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 015851 219 --TDTKVQRAAAGALRTLAFKNDENKNQIVEC-------------NA----LPTLILMLR-SEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 219 --~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-------------~~----~~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 278 (399)
++|-++...++.|+-|-.++++..+.|.+- -+ .+.+..++. .++..+|..|+.+|+.+..
T Consensus 244 gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 244 GISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLL 323 (866)
T ss_pred CCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Confidence 357788888888888887655554444331 00 011111111 2345666666666666654
Q ss_pred CChhHHHHHH----------HCCCc----HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC
Q 015851 279 SSPNIKKEVL----------AAGAL----QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344 (399)
Q Consensus 279 ~~~~~~~~~~----------~~~~l----~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~ 344 (399)
+.+.+...+. +..++ ..+++.|++++..+++.|...+..++ +..+.+.+ +..|+.+|.+
T Consensus 324 n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv--n~~Nv~~m-----v~eLl~fL~~ 396 (866)
T KOG1062|consen 324 NRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV--NESNVRVM-----VKELLEFLES 396 (866)
T ss_pred CCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh--ccccHHHH-----HHHHHHHHHh
Confidence 4444332221 01111 13445555555556666665555554 23333332 3345566655
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 015851 345 PDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~ 362 (399)
.+++.+...+.-+..+++
T Consensus 397 ~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 397 SDEDFKADIASKIAELAE 414 (866)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 566666666666665554
No 82
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.001 Score=58.23 Aligned_cols=292 Identities=16% Similarity=0.107 Sum_probs=168.7
Q ss_pred HHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHh--cccCCCCcccccCCCcc
Q 015851 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK--HLQAPPTSEADRNLKPF 128 (399)
Q Consensus 51 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~--lL~~~~~~~~~~~~~~~ 128 (399)
..........++++.+...+ ..+|.++...|...+..++..+.....++.+.....+-. +-...++
T Consensus 118 VseillvvNaeilklildcI--ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---------- 185 (524)
T KOG4413|consen 118 VSEILLVVNAEILKLILDCI--GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---------- 185 (524)
T ss_pred HHHHHHHhhhhHHHHHHHHH--cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh----------
Confidence 33344455667777777766 455667888999999999999888888887776655422 2222222
Q ss_pred hHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccc---------------cHHHHHHHHHHHHHH
Q 015851 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA---------------VNSVIRRAADAITNL 192 (399)
Q Consensus 129 ~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~---------------~~~~~~~a~~~L~~l 192 (399)
-+|......+..+. .+|+.....-.+|.+..|..-++...+.-...+ .+--++-....+.|+
T Consensus 186 --iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 186 --IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 45666667777776 778877777788888877777765433210000 001122233444444
Q ss_pred hhcC---ch--hHHHH------Hhc---------------CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHH
Q 015851 193 AHEN---SS--IKTRV------RME---------------GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246 (399)
Q Consensus 193 ~~~~---~~--~~~~~------~~~---------------~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 246 (399)
..+. |. .+... ... .++....++...+++..+..|..+++.+-+ +.++.+.+.
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlll 342 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLL 342 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHh
Confidence 4321 11 10000 000 011222334456688889999999999987 678888777
Q ss_pred hcCC--HHH-HHHhhcCCCHHHHHHHHHHHHHhhcC---ChhH----------HHHHHHC-------CCcHHHHHhhcCC
Q 015851 247 ECNA--LPT-LILMLRSEDSAIHYEAVGVIGNLVHS---SPNI----------KKEVLAA-------GALQPVIGLLSSC 303 (399)
Q Consensus 247 ~~~~--~~~-L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~----------~~~~~~~-------~~l~~L~~lL~~~ 303 (399)
+.|. ... +.+....+...-+..++.+|.+++.. .++. +..+.++ .-+..+..+++.+
T Consensus 343 kTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp 422 (524)
T KOG4413|consen 343 KTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP 422 (524)
T ss_pred ccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC
Confidence 7654 333 33444444444456667777777621 1111 1111111 3345667778889
Q ss_pred ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 304 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
.++++..+..++..++...--.+..+...|++..+.+- +.+..+.+..+=++++
T Consensus 423 fpEihcAalktfTAiaaqPWalkeifakeefieiVtDa----stEhaKaakdAkYecc 476 (524)
T KOG4413|consen 423 FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDA----STEHAKAAKDAKYECC 476 (524)
T ss_pred ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeeccc----chhhHHHHHHHHHHHH
Confidence 99999999999999986533444555556666555443 3333444444444444
No 83
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00062 Score=59.63 Aligned_cols=280 Identities=14% Similarity=0.171 Sum_probs=187.2
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-h--hHHH--HHHhCCChHHHHhcccCCCCcccccCCCcchHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E--EVVN--WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~--~~~~--~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~ 133 (399)
.+..++.|+.-+. .+|..++.-++..+..+..+ . .... .++..|+++.++.++-.++. ++-
T Consensus 80 apnlmpdLQrGLi--addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd------------eVA 145 (524)
T KOG4413|consen 80 APNLMPDLQRGLI--ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD------------EVA 145 (524)
T ss_pred chhhhHHHHhccc--CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH------------HHH
Confidence 4556666666553 34556777888888888775 2 2222 34478999999999988777 777
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHH--HHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851 134 KGSAFALGLLAVKPEHQQLIVDNGALSHL--VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (399)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~~~i~~L--~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (399)
..|...+..++..|...+.+.+++....+ .++-.+.++ -.+...+..+..+.+.++........+|.+..
T Consensus 146 kAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd--------iaRvRVleLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 146 KAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND--------IARVRVLELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred HHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh--------HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 89999999999999998888887766553 333344444 56667788888888777777777777888888
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHh----hcC--Chh
Q 015851 212 LVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNL----VHS--SPN 282 (399)
Q Consensus 212 L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l----~~~--~~~ 282 (399)
|..=|+- .+.-++...+.....|+. ...+++.+.+.|.++.+-+++.. .+|--...++...+.+ +.. +++
T Consensus 218 LeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvsee 296 (524)
T KOG4413|consen 218 LEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEE 296 (524)
T ss_pred HHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHH
Confidence 7776665 566777888888888886 55667777788999988888874 3333333344433333 321 111
Q ss_pred HH-HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCC--HHHHHH-hhCCCCHHHHHHHHHHHH
Q 015851 283 IK-KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA--VRPLIE-MLQSPDVQLREMSAFALG 358 (399)
Q Consensus 283 ~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~--v~~L~~-ll~~~~~~v~~~a~~~L~ 358 (399)
.. ...+ -+++..++++...++.....|.-+++.+-+ +.++.+.+...|- ...++. ..+.+-..-+..+..+|.
T Consensus 297 aiceali--iaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnahakqeaaihaLa 373 (524)
T KOG4413|consen 297 AICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALA 373 (524)
T ss_pred HHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHH
Confidence 11 1111 245566677778899999999999999964 4677777776553 222222 222233334667778888
Q ss_pred HhhccC
Q 015851 359 RLAQVI 364 (399)
Q Consensus 359 ~l~~~~ 364 (399)
+++...
T Consensus 374 aIagel 379 (524)
T KOG4413|consen 374 AIAGEL 379 (524)
T ss_pred Hhhccc
Confidence 887544
No 84
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00092 Score=64.38 Aligned_cols=212 Identities=16% Similarity=0.203 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 015851 75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~ 152 (399)
.-+.+|.+|+-.|..+.-- |+... ..+|.|.+-|.++++ .++..|+.+++.|+ .+|.+--.
T Consensus 156 skpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp------------~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 156 SKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDP------------SVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred CchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCc------------hHHHHHHHHHHHHHhhCCccccc
Confidence 4567788888877777653 44322 357889999998887 67789999999999 78765432
Q ss_pred HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHH
Q 015851 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGAL 231 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L 231 (399)
.-|.+.++|.....+ =+....+..+++|+.-.|.. ....++.|.+++.+.. ..+...+..++
T Consensus 219 -----LAP~ffkllttSsNN-------WmLIKiiKLF~aLtplEPRL-----gKKLieplt~li~sT~AmSLlYECvNTV 281 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNN-------WVLIKLLKLFAALTPLEPRL-----GKKLIEPITELMESTVAMSLLYECVNTV 281 (877)
T ss_pred -----ccHHHHHHHhccCCC-------eehHHHHHHHhhccccCchh-----hhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 447777887766543 45566788888888766643 2456888999988765 33444443333
Q ss_pred H--HhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHH
Q 015851 232 R--TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309 (399)
Q Consensus 232 ~--~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 309 (399)
. +++.+.++....+ +. +++.|--++.+.|+.++.-++-+++.+....+...+. .-+.+++.|...++.+|.
T Consensus 282 Va~s~s~g~~d~~asi-qL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRl 354 (877)
T KOG1059|consen 282 VAVSMSSGMSDHSASI-QL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRL 354 (877)
T ss_pred eeehhccCCCCcHHHH-HH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHH
Confidence 2 4454433332221 11 3556666778899999999999999998665554332 356788999999999999
Q ss_pred HHHHHHHHhhccChhhHHHH
Q 015851 310 EAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~l 329 (399)
.|+-.|..+.. .++...+
T Consensus 355 rALdLl~gmVs--kkNl~eI 372 (877)
T KOG1059|consen 355 RALDLLYGMVS--KKNLMEI 372 (877)
T ss_pred HHHHHHHHHhh--hhhHHHH
Confidence 99999999874 4444443
No 85
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.13 E-value=0.00049 Score=66.42 Aligned_cols=223 Identities=18% Similarity=0.161 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhcCChhhH---HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851 131 EVEKGSAFALGLLAVKPEHQ---QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~---~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (399)
.+|++|+..++.++.--..+ +.+...| -.|.+.|..... ++.-..+.+|..+.....-.+..--..+
T Consensus 814 ~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeyp--------EvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 814 KVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYP--------EVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccH--------HHHHHHHHHHHHHHHhccccccCCChhh
Confidence 78889999998888222211 1222333 235566665555 7888888888877743211111112357
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CChhHHH
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH--SSPNIKK 285 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~ 285 (399)
.+|.|..+|++...+++......++.++...++....--...+.--|+.+|...+.++|..|...++.|+. +..+...
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLa 963 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLA 963 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence 89999999999999999999999999998666543222223334457788888889999999999988873 2111111
Q ss_pred HHH----------------------H-CC---CcHHHHHhhcCCChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHH
Q 015851 286 EVL----------------------A-AG---ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPL 338 (399)
Q Consensus 286 ~~~----------------------~-~~---~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L 338 (399)
.++ + .| ++|.|+.=-..+...++.-.+.+++.+-..-.+ .++.+.. +.|.|
T Consensus 964 tLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya--v~Pll 1041 (1172)
T KOG0213|consen 964 TLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA--VTPLL 1041 (1172)
T ss_pred HHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH--hhHHH
Confidence 111 1 12 333443333456667887778888777654222 2233322 46888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 339 IEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 339 ~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
-..|.+.|..-|+-|..++..++-+.+
T Consensus 1042 eDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1042 EDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 888888899999999999999998754
No 86
>PF05536 Neurochondrin: Neurochondrin
Probab=98.07 E-value=0.00061 Score=66.33 Aligned_cols=244 Identities=16% Similarity=0.146 Sum_probs=159.2
Q ss_pred hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC-Ch---hhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KP---EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (399)
Q Consensus 106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~---~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~ 181 (399)
+...+.+|+..++ +=|-.++-.+.++.. ++ ..++.+.++=+.+.+-++|.....+... +....
T Consensus 7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~ 73 (543)
T PF05536_consen 7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEY 73 (543)
T ss_pred HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHH
Confidence 3445566666553 445566777777773 22 2234566776778888888775432211 12278
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (399)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (399)
+..++.+|+.+|. ++.....-.-.+-||.|++.+.+.+. .+...++.+|..++. .+++...+++.|+++.|...+.+
T Consensus 74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh
Confidence 8889999999996 55443222234569999999988776 999999999999996 89999999999999999999877
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHH---HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh-HH----HHHhc
Q 015851 261 EDSAIHYEAVGVIGNLVHSSPNIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KV----HIVQR 332 (399)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~----~l~~~ 332 (399)
.+.....|+.++.+++....... ..-.-..+++.+-..+.......+-+.+..|.++....+.. .. .-+-.
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 56678888888888875422100 00001134555666666666677788888999887654211 11 11223
Q ss_pred CCHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCC
Q 015851 333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 333 g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 365 (399)
.+..-+..++++ ..+.-|..+......+....+
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 344556666655 356666666666666665433
No 87
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00011 Score=71.13 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 015851 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (399)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ 340 (399)
-+.+....+.+++++++..-+.. ++.++.|++++...-.-+..+++.++..+....|..-+.+ ++.+..
T Consensus 362 vD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~ 430 (734)
T KOG1061|consen 362 VDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV-----VAILCE 430 (734)
T ss_pred hCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh-----hhhhcc
Confidence 35677777888888887432221 5678888888876665666777777777776665543332 333444
Q ss_pred hhCC-CCHHHHHHHHHHHHHhhccCCCCcchhHHHHH--hhccccHHHHHHHHhhhHhhh
Q 015851 341 MLQS-PDVQLREMSAFALGRLAQVITVSVLPAILIFI--IINECQLEVLAFVLSEMVLLF 397 (399)
Q Consensus 341 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 397 (399)
-+.+ ++|+.+.+-.|+++.-+..-++. +.+++.+ -..+...++...++.+.+.+|
T Consensus 431 ~~~sl~epeak~amiWilg~y~~~i~~a--~elL~~f~en~~dE~~~Vql~LLta~ik~F 488 (734)
T KOG1061|consen 431 NLDSLQEPEAKAALIWILGEYAERIENA--LELLESFLENFKDETAEVQLELLTAAIKLF 488 (734)
T ss_pred cccccCChHHHHHHHHHHhhhhhccCcH--HHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 4433 68899999999999999888873 3333322 122223456556665555443
No 88
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0015 Score=65.65 Aligned_cols=247 Identities=14% Similarity=0.140 Sum_probs=168.1
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 015851 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 154 (399)
.++.++.-|+.++..+..+.+....+...|.+..|+.+|++.. ..|..++.+|..|+.+++....-.
T Consensus 1784 ~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-------------S~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-------------SMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-------------HHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3556889999999999999888899999999999999998754 478899999999999999888888
Q ss_pred hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC---chhHH------------------------------
Q 015851 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN---SSIKT------------------------------ 201 (399)
Q Consensus 155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~---~~~~~------------------------------ 201 (399)
+.|++..+..++...... ..+.+++..++.+..+. |....
T Consensus 1851 ~hg~l~yil~~~c~~~~~-------QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSD-------QQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred hcCchhhhhHHHhccCcH-------HHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 999999999888766543 55566666666665211 10000
Q ss_pred --------------------------------------------------------------HHHhc------------C
Q 015851 202 --------------------------------------------------------------RVRME------------G 207 (399)
Q Consensus 202 --------------------------------------------------------------~~~~~------------~ 207 (399)
.+.+. +
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 00000 0
Q ss_pred ChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 208 GIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 208 ~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
.+..++++|..+++ ........++..|...+|.....+-.-|.+|.++..+...+..+-..|++.|+.++.+ .-+..
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHH
Confidence 01111222222121 1222223344444455566666666778888888888776666668899999999864 66777
Q ss_pred HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhC
Q 015851 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~ 343 (399)
.+.....+..++..+.... ...--|+.+|..+...+. +........|++|.|++++.
T Consensus 2083 AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred HHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence 7777778888888776433 333467777777764332 44455667899999999995
No 89
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=2.3e-05 Score=74.16 Aligned_cols=218 Identities=19% Similarity=0.202 Sum_probs=131.0
Q ss_pred hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CC--hhh----HHHHHhcCcHHHHHHHHhccccCcccccc
Q 015851 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK--PEH----QQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (399)
Q Consensus 106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~--~~~----~~~i~~~~~i~~L~~~L~~~~~~~~~~~~ 178 (399)
....++++++++. ++|..|++.++..+ .. |.- ...+. -.++..+...+.+.+-
T Consensus 236 Y~~A~~~lsD~~e------------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl------- 295 (823)
T KOG2259|consen 236 YSRAVKHLSDDYE------------DVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSL------- 295 (823)
T ss_pred HHHHHHHhcchHH------------HHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCce-------
Confidence 4556677777666 78878866665555 22 111 11111 2256677777776665
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhc-----------CChhhHHHHH
Q 015851 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAF-----------KNDENKNQIV 246 (399)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~-----------~~~~~~~~~~ 246 (399)
.++..++.+|+.+-+.++.+-.+-....++..+-.. ..+.-+.-.. .=+.-++ ..++....++
T Consensus 296 -~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~----s~GewSsGk~~~advpsee~d~~~~siI 370 (823)
T KOG2259|consen 296 -SVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY----SSGEWSSGKEWNADVPSEEDDEEEESII 370 (823)
T ss_pred -eeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH----hcCCcccCccccccCchhhccccccccc
Confidence 677788888888776555443333333333322111 0111111110 0000010 1123344577
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhH
Q 015851 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (399)
Q Consensus 247 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 326 (399)
.+|+...++.-|.++--+||..|...++.|+.+++..... .+..|+.+++.....+|..|..+|..++..-
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---- 441 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHL---- 441 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHh----
Confidence 8899999999999888899999999999999877765433 5788999999988899999999999987541
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (399)
Q Consensus 327 ~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 359 (399)
.++..-++.++..+.+.++++|++.-..|++
T Consensus 442 --~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 442 --AIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred --eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 1222234555555555555555554444443
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.01 E-value=0.00024 Score=67.06 Aligned_cols=238 Identities=16% Similarity=0.129 Sum_probs=147.9
Q ss_pred ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChh-h--HHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPE-H--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (399)
Q Consensus 105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~--~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~ 181 (399)
++...+.+|++..+ .+|.+|+...+.|+.--. + -..+...| ..|.+.|..... ++
T Consensus 605 ivStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~yp--------Ev 662 (975)
T COG5181 605 IVSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYP--------EV 662 (975)
T ss_pred HHHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccH--------HH
Confidence 34555666776666 678888888888872111 1 11222222 223444444443 77
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (399)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (399)
.-..+.++..+.....--..+.-..|.+|.|..+|++...++.......++.++...++....--...+.--|+.+|.+.
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~ 742 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW 742 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh
Confidence 77777777777743322111122358899999999999999999999999999986665332221223344578888888
Q ss_pred CHHHHHHHHHHHHHhhc--CChhHHHHHH----------------------H-CC---CcHHHHHhhcCCChHHHHHHHH
Q 015851 262 DSAIHYEAVGVIGNLVH--SSPNIKKEVL----------------------A-AG---ALQPVIGLLSSCCSESQREAAL 313 (399)
Q Consensus 262 ~~~v~~~a~~~L~~l~~--~~~~~~~~~~----------------------~-~~---~l~~L~~lL~~~~~~v~~~a~~ 313 (399)
+.++|.+|...++.|+. +..+....+. + .| ++|.|+.=-.++...++...+.
T Consensus 743 nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 743 NKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred hHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHH
Confidence 99999999998888873 2111111111 1 12 2333333333556677777777
Q ss_pred HHHHhhccChh-hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 314 LLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 314 ~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+++.+-..-.+ .++.+ ..+.|.|-+.+.+.|+.-|+.|...+..|+-+.+.
T Consensus 823 am~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 823 AMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 77766543211 22222 23467888888889999999999999999988553
No 91
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0038 Score=62.82 Aligned_cols=141 Identities=17% Similarity=0.165 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHh----cCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 222 KVQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~----~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
+-...++.+|.|+...+|+....+-. -|.++.+...+.. .++.++..|+..+..++.+ .++...+...+.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHH
Confidence 35678899999999988876655443 4667888877764 6889999999999888754 6777888899988888
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhccCC
Q 015851 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+.+|.+ .|..|..++.+|..+++ +++........|++..+..++ .+++++.|..++..++.+..+.-
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence 888865 45788999999999986 467777778888888888777 56789999999999999986544
No 92
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.99 E-value=3.5e-05 Score=55.64 Aligned_cols=86 Identities=35% Similarity=0.506 Sum_probs=69.9
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851 251 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 251 ~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (399)
+|.|++.| +++++.++..++++|+.+- ++ .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889888 7889999999999999662 12 24899999999999999999999999873
Q ss_pred HhcCCHHHHHHhhCC-CCHHHHHHHHHHHH
Q 015851 330 VQRGAVRPLIEMLQS-PDVQLREMSAFALG 358 (399)
Q Consensus 330 ~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~ 358 (399)
....++.|.+++.+ .+..++..|..+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23368889998876 45667899988874
No 93
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.0023 Score=60.84 Aligned_cols=276 Identities=15% Similarity=0.140 Sum_probs=158.0
Q ss_pred HHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 015851 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (399)
Q Consensus 63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~ 142 (399)
.+.+.+.+. ..+...|..+.+.+..+..+.-. ..+.+.+++..+...+.+..... -++.+..+...
T Consensus 136 l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~~i-~~~~~~~~l~~l~~ai~dk~~~~-----------~re~~~~a~~~ 201 (569)
T KOG1242|consen 136 LELLLELLT--STKIAERAGAAYGLAGLVNGLGI-ESLKEFGFLDNLSKAIIDKKSAL-----------NREAALLAFEA 201 (569)
T ss_pred HHHHHHHhc--cccHHHHhhhhHHHHHHHcCcHH-hhhhhhhHHHHHHHHhcccchhh-----------cHHHHHHHHHH
Confidence 334444442 33455666777777777665322 33456677888888777655521 12222222222
Q ss_pred hcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH
Q 015851 143 LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222 (399)
Q Consensus 143 l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 222 (399)
.+.+-. ...+.+.++.+-.++.+..+... .++..+..+...+...-+.. .-...+|.++.-+....+.
T Consensus 202 ~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~-----~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~~~kWr 269 (569)
T KOG1242|consen 202 AQGNLG---PPFEPYIVPILPSILTNFGDKIN-----KVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLLEAKWR 269 (569)
T ss_pred HHHhcC---CCCCchHHhhHHHHHHHhhccch-----hhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHHHHhhh
Confidence 221100 11123344444444444332221 66666666555555322211 1122344444444444778
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhHHHHHH------------
Q 015851 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNIKKEVL------------ 288 (399)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~------------ 288 (399)
....++..++.++.. ....-...-..++|.+...|.+.+++++..+..++..++.. +++ ++.++
T Consensus 270 tK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 270 TKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSC 347 (569)
T ss_pred hHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCccc
Confidence 889999999999874 44444555567999999999999999999999999888742 121 11111
Q ss_pred ------------------HCCCcHHHHHh----hcCCChHHHHHHHHHHHHhhccC--hhhHHHHHhcCCHHHHHHhhCC
Q 015851 289 ------------------AAGALQPVIGL----LSSCCSESQREAALLLGQFAATD--SDCKVHIVQRGAVRPLIEMLQS 344 (399)
Q Consensus 289 ------------------~~~~l~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~v~~L~~ll~~ 344 (399)
+...+..++.+ +...+...++.++.+++|++.-- +.....++. .++|-|-..+.+
T Consensus 348 ~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d 426 (569)
T KOG1242|consen 348 YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDD 426 (569)
T ss_pred chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcC
Confidence 11122233333 33445678888999999998643 222222222 246666667777
Q ss_pred CCHHHHHHHHHHHHHhhccCCCC
Q 015851 345 PDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
..|++|..+..+|+.+-+.-.+.
T Consensus 427 ~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 427 AVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred CChhHHHHHHHHHHHHHHHHHhh
Confidence 89999999999998877766553
No 94
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.98 E-value=1.7e-05 Score=57.25 Aligned_cols=86 Identities=34% Similarity=0.448 Sum_probs=69.2
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851 209 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (399)
Q Consensus 209 i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (399)
|+.|++.| +++++.++..++.+|+.+-. + ..++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888988 88899999999999995532 2 35899999999999999999999999883
Q ss_pred HHCCCcHHHHHhhcCC-ChHHHHHHHHHHH
Q 015851 288 LAAGALQPVIGLLSSC-CSESQREAALLLG 316 (399)
Q Consensus 288 ~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~ 316 (399)
+...++.|.+++.++ +..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123788999988765 4566888888875
No 95
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.97 E-value=0.00099 Score=61.40 Aligned_cols=190 Identities=33% Similarity=0.410 Sum_probs=139.6
Q ss_pred CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (399)
Q Consensus 104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~ 183 (399)
..++.+.+++.+.+. .+|..+.+.++.+.. ..+++.+..++.+.+. .++.
T Consensus 43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~--------~vr~ 92 (335)
T COG1413 43 EAADELLKLLEDEDL------------LVRLSAAVALGELGS----------EEAVPLLRELLSDEDP--------RVRD 92 (335)
T ss_pred hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH--------HHHH
Confidence 457778888888755 688888888776652 2268899999988776 7888
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
.+..+|+.+-. ...++.++.++. +++..+|..+.++|+.+-.. . .+..++..+.++.
T Consensus 93 ~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~---------a~~~l~~~l~~~~ 150 (335)
T COG1413 93 AAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE--R---------ALDPLLEALQDED 150 (335)
T ss_pred HHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--h---------hhHHHHHHhccch
Confidence 88887666542 344677888888 58899999999999988862 1 2566666666644
Q ss_pred H------------HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH
Q 015851 263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (399)
Q Consensus 263 ~------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (399)
. .++..+...++.+- ++ ..++.+...+......++..|..+|+.+...+
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~--~~---------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGELG--DP---------EAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHcC--Ch---------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 1 45666666666652 22 25788888898888899999999999987542
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 331 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
..+.+.+...+.+++..+|..++.+|+.+.....
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~ 245 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIGDEEA 245 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchh
Confidence 3445778888888888898888888877765444
No 96
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=3.5e-05 Score=71.40 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=141.1
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHH
Q 015851 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (399)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 264 (399)
++-.|..++..-...+.-+....+...|+++|++++..+...+...+.|...........+++.|++..|++++.+.|..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 44455566654444555566677889999999998888888999999999987777888899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChh-HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh---HHHHHh---cC-CHH
Q 015851 265 IHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIVQ---RG-AVR 336 (399)
Q Consensus 265 v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l~~---~g-~v~ 336 (399)
++....|.+..+..+..+ .+..++..-++..++++.+.+...++......|.|++.....+ +..+.. .. +.+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999876544 3456778889999999999999999999999999998632221 221111 11 456
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 337 PLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.|++.+...+|......+..|.+++.-.++
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~ 598 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDT 598 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccch
Confidence 677777777777777778888877765554
No 97
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.96 E-value=0.00015 Score=62.87 Aligned_cols=184 Identities=18% Similarity=0.141 Sum_probs=113.2
Q ss_pred hhhhHHHHHHHHHHHHHHcCCh---hHHHHHHhC--CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC--
Q 015851 73 LEADRAAAKRATHVLAELAKNE---EVVNWIVEG--GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-- 145 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~-- 145 (399)
.+.+...|..|+..|..+..+. .....+... .++..+...+.+... .+...|+.++..++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs------------~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS------------KVSKTACQLLSDLARQL 84 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---------------HHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHH
Confidence 4567778889999998887632 333333221 566677777765554 677899999999982
Q ss_pred ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 015851 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR 225 (399)
Q Consensus 146 ~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 225 (399)
....... -..+++.|++.+.+... .+...+..+|..++...+.... + .++.+...+.+.++.+|.
T Consensus 85 ~~~~~~~--~~~~l~~Ll~~~~~~~~--------~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~ 149 (228)
T PF12348_consen 85 GSHFEPY--ADILLPPLLKKLGDSKK--------FIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVRE 149 (228)
T ss_dssp GGGGHHH--HHHHHHHHHHGGG---H--------HHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHH
T ss_pred hHhHHHH--HHHHHHHHHHHHccccH--------HHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHH
Confidence 2223332 22377888888887665 7888899999999965441111 1 145677778899999999
Q ss_pred HHHHHHHHhhcCCh---hhHHH-HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851 226 AAAGALRTLAFKND---ENKNQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 226 ~a~~~L~~L~~~~~---~~~~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (399)
.++..+..+....+ ..... ..-..+++.+.+.+.+.+++||..|-.+++.+....++.
T Consensus 150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 99999999987544 11111 111346788899999999999999999999986544443
No 98
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00087 Score=63.65 Aligned_cols=243 Identities=17% Similarity=0.191 Sum_probs=153.0
Q ss_pred ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHH
Q 015851 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (399)
Q Consensus 105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~ 184 (399)
++..+++-++.+.. .+|+....+|..+.-..+... ...+.+.+.+++..... .-+..
T Consensus 97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~--------~~~~~ 153 (569)
T KOG1242|consen 97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKI--------AERAG 153 (569)
T ss_pred HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccH--------HHHhh
Confidence 45556565555544 677777777777662221111 11245666666664443 56677
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHhhcCChhhHHHHHhcCC---HHHHHHhhcC
Q 015851 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA-AAGALRTLAFKNDENKNQIVECNA---LPTLILMLRS 260 (399)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~L~~L~~~~~~~~~~~~~~~~---~~~L~~ll~~ 260 (399)
+.+.++.+..+.. -..+...+.+..+.....+.....++. ++.+.-.....-. ...+.++ +|.+...+.+
T Consensus 154 aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 154 AAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGD 227 (569)
T ss_pred hhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhc
Confidence 8888888884332 234566788888888888876555443 3333322222111 2223334 4444445556
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 015851 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (399)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ 340 (399)
..+.+|..|..+...+....+...... +++.++.-+....+..+..++..++.++...+. .-.+.-..++|.+.+
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~ap~-qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSE 302 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHH
Confidence 678888888777777654433322222 356666555555778888899999988865443 344555678999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhccCCCC----cchhHHHHHhhccc
Q 015851 341 MLQSPDVQLREMSAFALGRLAQVITVS----VLPAILIFIIINEC 381 (399)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~~~ 381 (399)
.|.++.+++++.+..+|.+++.-..|. ++|.++..+...++
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC 347 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999988875 55666666555554
No 99
>PF05536 Neurochondrin: Neurochondrin
Probab=97.90 E-value=0.001 Score=64.84 Aligned_cols=195 Identities=19% Similarity=0.133 Sum_probs=139.0
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch---hHHHHHhcCChHHHHHhhcC-------CCHHHHHHH
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS---IKTRVRMEGGIPPLVELLEF-------TDTKVQRAA 227 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a 227 (399)
.+...+++|+...+ +=+-.++..+..++..++. .+..+.+.-+.+.+-++|.+ +....+.-|
T Consensus 6 ~l~~c~~lL~~~~D--------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 6 SLEKCLSLLKSADD--------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHHhccCCc--------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 46677788888775 6667788888888865542 23346677777888888877 235678889
Q ss_pred HHHHHHhhcCChhhH--HHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC
Q 015851 228 AGALRTLAFKNDENK--NQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 304 (399)
Q Consensus 228 ~~~L~~L~~~~~~~~--~~~~~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 304 (399)
...|..++. .++.. ..++. -+|.|+..+...+. ++...++.+|..++ ..+.+...+++.|.++.|.+.+.+ +
T Consensus 78 vsvL~~f~~-~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~ 152 (543)
T PF05536_consen 78 VSVLAAFCR-DPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-Q 152 (543)
T ss_pred HHHHHHHcC-ChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-C
Confidence 999999998 55543 33444 59999999987766 99999999999999 558889999999999999999987 5
Q ss_pred hHHHHHHHHHHHHhhccChh-hHH--HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 305 SESQREAALLLGQFAATDSD-CKV--HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~-~~~--~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+.....|..++.+++..... ... .-.-..+++.+-..........+-..+..|..+-...+
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence 56788888888888764321 100 00001334555555554455555667777777776663
No 100
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.012 Score=53.79 Aligned_cols=232 Identities=18% Similarity=0.239 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHHHcCC----------hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc
Q 015851 75 ADRAAAKRATHVLAELAKN----------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~----------~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~ 144 (399)
++..+-...+..|..+... ....+++++.++++.|++-+..-+..+.+ +.+=...+...+-|+.
T Consensus 137 eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvke------ea~gv~~~L~vveNlv 210 (536)
T KOG2734|consen 137 ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKE------EADGVHNTLAVVENLV 210 (536)
T ss_pred CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchh------hhhhhHHHHHHHHHHH
Confidence 3445566777777777641 24556788899999999988765443332 2234457778888888
Q ss_pred -CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-----C
Q 015851 145 -VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----F 218 (399)
Q Consensus 145 -~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~ 218 (399)
..++....+++.|.+.-|+.-+....... .-..++.-+|.-+.+.+...+..+....++..+++-+. +
T Consensus 211 ~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~------aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d 284 (536)
T KOG2734|consen 211 EVRPAICTEIVEQGLLSWLLKRLKGKAAFD------ANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD 284 (536)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHhcccCcc------hhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence 78889999999888888888665443322 45567778888888766666666667788888877653 2
Q ss_pred ---C-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--hHHHHHHHCCC
Q 015851 219 ---T-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--NIKKEVLAAGA 292 (399)
Q Consensus 219 ---~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~ 292 (399)
. ..+..++...+|+.+.. .+.++..+....+++.+.-+++. ....+..++.+|-.+..+.+ .+...+++..+
T Consensus 285 P~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 285 PATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 1 24677888889998888 79999999999999977777766 56778899999999887755 56677788888
Q ss_pred cHHHHHhhc-CCC---------hHHHHHHHHHHHHhhc
Q 015851 293 LQPVIGLLS-SCC---------SESQREAALLLGQFAA 320 (399)
Q Consensus 293 l~~L~~lL~-~~~---------~~v~~~a~~~L~~l~~ 320 (399)
+..++.+.- .+. .+.-++.+..|+.+..
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 877776643 222 2445666666666654
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.89 E-value=3.1e-05 Score=50.34 Aligned_cols=55 Identities=36% Similarity=0.391 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (399)
+.+|..|+++|++++...++.... ....+++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998755555444 3345899999999999999999999999975
No 102
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.89 E-value=0.00075 Score=57.76 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchH---HHHHHHHHHHHHhcCChhhH
Q 015851 76 DRAAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEH---EVEKGSAFALGLLAVKPEHQ 150 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~---~~~~~a~~~L~~l~~~~~~~ 150 (399)
+++.|+.|+..|+.--+. ++..-.+... |.+..|++=+-+..+... +....+ .-..+|+..|..+|.+|+.|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~---~~~Lt~~~snRVcnaLaLlQ~vAshpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALS---PPNLTARQSNRVCNALALLQCVASHPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTT---TT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCC---CcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence 456688999988887765 6666566655 666666543322222111 011111 33466777777888999999
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 229 (399)
..+.++.+.-.|.-+|+..+.....+ .++-.++++++.+.. +++++-..+...+.+|..+..|+.+++-.+..|..
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E---~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtf 161 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFE---YLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATF 161 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHH---HHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccc---hhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHH
Confidence 99999998888888887665543322 678889999999996 34456666778899999999999999999999999
Q ss_pred HHHHhhcCChhhHHHHHhc--------CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 230 ALRTLAFKNDENKNQIVEC--------NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~--------~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
.+..+.. ++.+-..+++. .++..++ .+...+++.+.++.+++-..++.+ +..+..+.
T Consensus 162 IlqKIL~-dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~ 227 (262)
T PF04078_consen 162 ILQKILL-DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALR 227 (262)
T ss_dssp HHHHHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHH
T ss_pred HHHHHHc-chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHH
Confidence 9999997 56666555441 1222222 334567889999999999999864 55555443
No 103
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.87 E-value=0.00039 Score=65.69 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=114.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (399)
.++.++.+|++..+.+|..|+...+.|+. --.++ +.+...| -.|...+....+++.-..+.++..|.....-..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 45677888999999999999998888875 22222 1222232 246677778899999888888888863211110
Q ss_pred HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
-..-..|++|.|..+|++....+..+....++.++..+++....---..+.=-|+.+|++.+.++|++|...++.+++.-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 11113689999999999999999999999999998776652211111223345778888889999999999999999876
Q ss_pred CCC-cchhHHHHH
Q 015851 365 TVS-VLPAILIFI 376 (399)
Q Consensus 365 ~~~-~~~~~~~~~ 376 (399)
.+. ++..+++-+
T Consensus 762 GPqdvL~~LlnnL 774 (975)
T COG5181 762 GPQDVLDILLNNL 774 (975)
T ss_pred CHHHHHHHHHhcc
Confidence 642 344443333
No 104
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0092 Score=52.10 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=146.5
Q ss_pred HHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchH
Q 015851 51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (399)
Q Consensus 51 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 130 (399)
+.+.........++.+..++...+ + -..|+.+|.|++.++..++.+.+. .+..++..+.++..
T Consensus 34 ~~~~~~~~~~~~lk~l~qL~~~~~--~--~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~------------ 96 (353)
T KOG2973|consen 34 GLQSLSKYSEALLKDLTQLLKDLD--P--AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQS------------ 96 (353)
T ss_pred chhhhccchhhhHHHHHHHccCcc--c--ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCccc------------
Confidence 344445555666776776664222 2 447899999999999999988877 77777777776644
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHh--c----CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVD--N----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~--~----~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 204 (399)
.+-...+..|.|++..+.....+.. . .++..++..+.+...... .-..+.+.++.||++ .+..+..+.
T Consensus 97 ~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~-----a~f~ylA~vf~nls~-~~~gR~l~~ 170 (353)
T KOG2973|consen 97 PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAY-----AEFHYLAPVFANLSQ-FEAGRKLLL 170 (353)
T ss_pred chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccc-----cchhHHHHHHHHHhh-hhhhhhHhc
Confidence 3445889999999965554433321 1 234444444433322211 233567888999995 444555555
Q ss_pred hcCCh--HHHHHhhcCCCHHH-HHHHHHHHHHhhcCChhhHHHHHhc--CCHHHHHH---------------------hh
Q 015851 205 MEGGI--PPLVELLEFTDTKV-QRAAAGALRTLAFKNDENKNQIVEC--NALPTLIL---------------------ML 258 (399)
Q Consensus 205 ~~~~i--~~L~~ll~~~~~~v-~~~a~~~L~~L~~~~~~~~~~~~~~--~~~~~L~~---------------------ll 258 (399)
....+ ..+..+ .+.+..+ +...+++|.|.+. ...+...++.. ..+|.++. ++
T Consensus 171 ~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cF-d~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyL 248 (353)
T KOG2973|consen 171 EPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCF-DAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYL 248 (353)
T ss_pred chhhhhHhhhhcc-cccchhhhccchHHHHHhhhc-cchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcC
Confidence 44433 233333 3344445 4567899999998 44555555542 23343322 22
Q ss_pred c-----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhh
Q 015851 259 R-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFA 319 (399)
Q Consensus 259 ~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~ 319 (399)
. .+++.++..-+.+|.-|+.. ..++..+.+.|+-+.+-.+=.. .++++++.+-.....+.
T Consensus 249 p~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 249 PEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred CccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1 24678999999999999965 5667777777766665555443 44455544444444444
No 105
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.84 E-value=0.0015 Score=64.78 Aligned_cols=174 Identities=17% Similarity=0.173 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhh-HHHHHh-----------
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVE----------- 247 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~----------- 247 (399)
.++..++-.|+.+-++.+.. ...+....+++.+.+++++++.+|..+|++++.++-.. ...+++
T Consensus 834 ~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyL 909 (1233)
T KOG1824|consen 834 SIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYL 909 (1233)
T ss_pred hHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHH
Confidence 67777777777777644321 12344557889999999999999999999999854331 111111
Q ss_pred -----------c------CCHHHHHHh----hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChH
Q 015851 248 -----------C------NALPTLILM----LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE 306 (399)
Q Consensus 248 -----------~------~~~~~L~~l----l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 306 (399)
. ..++.+..+ .....+..|.-.+.|||.++..+++. .+|.|-..+.++.+.
T Consensus 910 LLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~ 981 (1233)
T KOG1824|consen 910 LLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASN 981 (1233)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcc
Confidence 0 011112222 22234456666677777776554443 578888888888888
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 307 v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.+.-+..++-......+.-.+.+.. ..+..++.+++++|.+||+.|..++...+.+-|+
T Consensus 982 ~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 982 TRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred hhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 8888777776655443433333332 2477888999999999999999999999988886
No 106
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.84 E-value=0.0065 Score=55.97 Aligned_cols=186 Identities=31% Similarity=0.367 Sum_probs=132.1
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L 140 (399)
..++.+...+. +.+..+|..|.+.+..+.. .-.++.+..++.+.+. .+|..|..+|
T Consensus 43 ~~~~~~~~~l~--~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~------------~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLE--DEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDP------------RVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHc--CCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH------------HHHHHHHHHH
Confidence 34555555553 3367778888888554432 2357888889988776 7888999988
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHHHhc-cccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC
Q 015851 141 GLLAVKPEHQQLIVDNGALSHLVNLLKR-HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (399)
Q Consensus 141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~-~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 219 (399)
+.+-.. ..++.++.++.. .+. .++..+.++|..+-.. ..+..++..+.+.
T Consensus 99 g~~~~~----------~a~~~li~~l~~d~~~--------~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~ 149 (335)
T COG1413 99 GELGDP----------EAVPPLVELLENDENE--------GVRAAAARALGKLGDE-----------RALDPLLEALQDE 149 (335)
T ss_pred HccCCh----------hHHHHHHHHHHcCCcH--------hHHHHHHHHHHhcCch-----------hhhHHHHHHhccc
Confidence 887632 268889999986 333 7888899998887732 2255666676665
Q ss_pred CH------------HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851 220 DT------------KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (399)
Q Consensus 220 ~~------------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (399)
.. .++..+...++.+-. ...++.+...+.+.+..++..|..+|+.+....
T Consensus 150 ~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------- 211 (335)
T COG1413 150 DSGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------- 211 (335)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------
Confidence 52 345555555554443 246788899999999999999999999997542
Q ss_pred HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
..+...+...+...+..++..++.+|+.+-
T Consensus 212 --~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 212 --VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred --hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 335677888888889999998888888764
No 107
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.83 E-value=0.0036 Score=52.73 Aligned_cols=182 Identities=14% Similarity=0.170 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhc
Q 015851 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (399)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~ 156 (399)
-...|+..|-.++++|+.+..|.+..+--.|-.+|...+.. .+|+ .+|..++.+++.|. ++.+.-..+...
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~------r~fE-yLRLtsLGVIgaLvk~dd~eVi~fLl~T 167 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKS------RPFE-YLRLTSLGVIGALVKNDDQEVIRFLLTT 167 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccC------CchH-HHhHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 35577888888899999999999999888888888765442 3333 78999999999999 556667778889
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc-------CCh-HHHHHhhcCCCHHHHHHHH
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-------GGI-PPLVELLEFTDTKVQRAAA 228 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~i-~~L~~ll~~~~~~v~~~a~ 228 (399)
+++|..++.+..+++ .-+..+..++..+..++.......... ..+ ..+..+.+.+++.+..++.
T Consensus 168 eIVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhvi 239 (293)
T KOG3036|consen 168 EIVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVI 239 (293)
T ss_pred hhHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999998886 555667777777775554433221111 122 2334455668899999999
Q ss_pred HHHHHhhcCChhhHHHHHhc--CCH-H-HHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 229 GALRTLAFKNDENKNQIVEC--NAL-P-TLILMLRSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~--~~~-~-~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (399)
++..+|+. ++..+..+... ..+ . .+..++ .+|++.+..-...+.|++
T Consensus 240 RcYlrLsd-nprar~aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 240 RCYLRLSD-NPRARAALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHHhcC-CHHHHHHHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhc
Confidence 99999997 67666555431 111 1 122223 235566666666666664
No 108
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.83 E-value=0.011 Score=49.97 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015851 78 AAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (399)
Q Consensus 78 ~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 155 (399)
..++.|+.-|+.--.. ++....+... |.+..+++=.-...+........+...--..+|...|.-++.+|+.+..+.+
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 3556666666665552 5555555544 4444444322111111110000011112345777778888899999999999
Q ss_pred cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (399)
Q Consensus 156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (399)
+.+--++-.+|.....+...+ -++..++++|+.|...+ .++-..+...+++|.+++.+..+++..+..|..++..+
T Consensus 119 A~iPlylYpfL~Tt~~~r~fE---yLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFE---YLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred ccChhhhHHhhhccccCCchH---HHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 987777777887665544333 67888999999999744 34555667789999999999999999999999999999
Q ss_pred hcCChhhHHHHHhc--------CCHH-HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 235 AFKNDENKNQIVEC--------NALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 235 ~~~~~~~~~~~~~~--------~~~~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
.. ++.+-..+++. ..+. .+.++.+.+++.+..+++++..+++.. +..+..
T Consensus 196 ll-dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~a 254 (293)
T KOG3036|consen 196 LL-DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAA 254 (293)
T ss_pred hh-ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 87 56655555441 1122 233445568889999999999999853 544433
No 109
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.80 E-value=4e-05 Score=49.79 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (399)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 360 (399)
+.+|..|+++|++++...++.... ....+++.|..++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988665555444 4455799999999999999999999999875
No 110
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.80 E-value=0.00017 Score=52.69 Aligned_cols=66 Identities=29% Similarity=0.328 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHh
Q 015851 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (399)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (399)
+...+.+|+|++..++..+..+...+++|.++.... ..+|-+++.|..++.||+.++++++..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456788999999999999999999999999999864 456999999999999999999999887766
No 111
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0084 Score=51.19 Aligned_cols=202 Identities=29% Similarity=0.296 Sum_probs=124.9
Q ss_pred hCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (399)
Q Consensus 102 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~ 181 (399)
....++.|+..|.+.+. .|.+|..|..+|+.+. .+. .++.+-++.++.-. ++
T Consensus 65 ~~~Av~~l~~vl~desq----------~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~--------~v 116 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQ----------EPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCK--------EV 116 (289)
T ss_pred cchhhHHHHHHhccccc----------chHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCcc--------cc
Confidence 44578888888776655 4588899999999887 322 33444444432222 56
Q ss_pred HHHHHHHHHHHhhcCchhH-----HHH-------HhcCChHHHHHhhcCCC-HH-HHHHHHHHHHHhhcCChhhHHHHHh
Q 015851 182 IRRAADAITNLAHENSSIK-----TRV-------RMEGGIPPLVELLEFTD-TK-VQRAAAGALRTLAFKNDENKNQIVE 247 (399)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~-----~~~-------~~~~~i~~L~~ll~~~~-~~-v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (399)
.+.+..++..+-..+...+ ... ...+-+..+-..+.+.+ +. -|..|...|.|+-. ++
T Consensus 117 ~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee------- 187 (289)
T KOG0567|consen 117 RETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE------- 187 (289)
T ss_pred chHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH-------
Confidence 6655566655542111100 000 01122334444444433 22 24455555555542 22
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc--CCChHHHHHHHHHHHHhhccChhh
Q 015851 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDC 325 (399)
Q Consensus 248 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~ 325 (399)
.+-.|+.-+..++.-.|..++.+++.|- ++. .++.|.+.|. ..++-+|.+|+.+|+.++ ++++
T Consensus 188 --aI~al~~~l~~~SalfrhEvAfVfGQl~--s~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~~ 252 (289)
T KOG0567|consen 188 --AINALIDGLADDSALFRHEVAFVFGQLQ--SPA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIA--DEDC 252 (289)
T ss_pred --HHHHHHHhcccchHHHHHHHHHHHhhcc--chh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHHH
Confidence 3555666666777889999999999984 233 4777777775 467789999999999987 3444
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 326 ~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
++.|.+.+.+.++-|++.+..+|..+-...
T Consensus 253 ---------~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 253 ---------VEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred ---------HHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 567778888888888888888887766544
No 112
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0051 Score=60.08 Aligned_cols=254 Identities=19% Similarity=0.194 Sum_probs=145.5
Q ss_pred hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
.|..+.+|..|+.++-++-+ +++....+ +..+-.||.+..+.+ .-.|+.++..+| |+.-+
T Consensus 153 ~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splV------------vgsAv~AF~evC--Perld 213 (968)
T KOG1060|consen 153 TDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLV------------VGSAVMAFEEVC--PERLD 213 (968)
T ss_pred cCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcc------------hhHHHHHHHHhc--hhHHH
Confidence 45677899999999999988 77776654 455667788777743 347788887777 33333
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc---CchhH---------------------HHHHhcC
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE---NSSIK---------------------TRVRMEG 207 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~~---------------------~~~~~~~ 207 (399)
.+.. -...++++|.+-++= =+......|...|.+ .|..- .......
T Consensus 214 LIHk--nyrklC~ll~dvdeW--------gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~ 283 (968)
T KOG1060|consen 214 LIHK--NYRKLCRLLPDVDEW--------GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP 283 (968)
T ss_pred HhhH--HHHHHHhhccchhhh--------hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCc
Confidence 3332 345566665543321 112233333333321 11000 0000000
Q ss_pred ChHHH----HHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851 208 GIPPL----VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 208 ~i~~L----~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (399)
=+..| -.++.+.++.+.-+++++++.++-. ... .+++..|+.+|.+ +.+++...+..+..++...+..
T Consensus 284 D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~--~~~-----~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~l 355 (968)
T KOG1060|consen 284 DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK--NQV-----TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTL 355 (968)
T ss_pred cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH--HHH-----HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhh
Confidence 11222 2345677889999999999999852 211 2346677777765 3345555555555544322111
Q ss_pred H-------------------------HHHHHCC----CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCC
Q 015851 284 K-------------------------KEVLAAG----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (399)
Q Consensus 284 ~-------------------------~~~~~~~----~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~ 334 (399)
. ..+.+.+ +++.+..++.+.+..+...++.+|+.++..... +...+
T Consensus 356 F~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tC 430 (968)
T KOG1060|consen 356 FEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTC 430 (968)
T ss_pred hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHH
Confidence 0 0111112 344445555666666777777888887743222 23346
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVITVSV 368 (399)
Q Consensus 335 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (399)
+..|+.++.+.+..|...++..+..|....+.+.
T Consensus 431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence 7788889988888899999999999988887653
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.76 E-value=0.0068 Score=57.81 Aligned_cols=243 Identities=17% Similarity=0.190 Sum_probs=154.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851 73 LEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~ 150 (399)
.+.+..+..+|+.||+|+... +..|..+.+.|+.+.++..|+..... ...+++.....++|.-++ ..+..+
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~-------~~~~d~~Fl~~RLLFLlTa~~~~~~ 114 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS-------SQPSDVEFLDSRLLFLLTALRPDDR 114 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc-------CCChhHHHHHHHHHHHHhcCChhHH
Confidence 455678899999999999985 99999999999999999999876321 012378888999998888 677777
Q ss_pred HHHHh-cCcHHHHHHHHhcccc----Ccc-----ccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc---
Q 015851 151 QLIVD-NGALSHLVNLLKRHMD----SNC-----SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--- 217 (399)
Q Consensus 151 ~~i~~-~~~i~~L~~~L~~~~~----~~~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--- 217 (399)
..+++ .+++..++..|...-. ... .....+....++.++.|+..+.+.... -.....++.++.++.
T Consensus 115 ~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l 193 (446)
T PF10165_consen 115 KKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLL 193 (446)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHh
Confidence 66654 4778877777654311 110 112336778899999999865554322 011233333333321
Q ss_pred ----C--CCHHHHHHHHHHHHHhhcCChhh-------HH----HHHhcCCHHHHHHhhcC-----C---CHHHHHHHHHH
Q 015851 218 ----F--TDTKVQRAAAGALRTLAFKNDEN-------KN----QIVECNALPTLILMLRS-----E---DSAIHYEAVGV 272 (399)
Q Consensus 218 ----~--~~~~v~~~a~~~L~~L~~~~~~~-------~~----~~~~~~~~~~L~~ll~~-----~---~~~v~~~a~~~ 272 (399)
. +......++..+|.|+=....+. .. .......+..|+.+|+. . -.+...-.+.+
T Consensus 194 ~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~l 273 (446)
T PF10165_consen 194 PPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTL 273 (446)
T ss_pred ccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHH
Confidence 1 12456777777777763211111 00 01112345566666642 1 12455666777
Q ss_pred HHHhhcCChhHHHHHHH----------------CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851 273 IGNLVHSSPNIKKEVLA----------------AGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 273 L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
|.+++..+...++.+.. ...-..|++++.++.+.++..++..|..+|..+.
T Consensus 274 L~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 274 LTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 88887665555444432 1355689999998888999999999999985443
No 114
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.76 E-value=0.001 Score=62.15 Aligned_cols=119 Identities=15% Similarity=0.044 Sum_probs=79.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
+..++..|.+.++.++..+..+|+.+-. .+..+.|+.++.++++.++..++.+++...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 6677777777777788877777775443 134666777777777777777776666521
Q ss_pred HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
....+.+..+|++.++.++..|+.+|+.+-. . ..++.|...+.+.++.||..|+.++..+.
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--~---------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELPR--R---------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--c---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 1124466777777777777777777777642 1 23445666677777777777777776664
No 115
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.74 E-value=0.014 Score=54.18 Aligned_cols=174 Identities=15% Similarity=0.169 Sum_probs=118.7
Q ss_pred HHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccc---------cC-------CC-----c-chHHHHHHHHH
Q 015851 82 RATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEAD---------RN-------LK-----P-FEHEVEKGSAF 138 (399)
Q Consensus 82 ~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---------~~-------~~-----~-~~~~~~~~a~~ 138 (399)
.|+..|-.+... +.....+.+.+|+..++..+..+-....+ .. .. + ....+.+..++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 355556555553 56666778888888888777533211111 00 00 0 11233445555
Q ss_pred HHHHhcC-ChhhHHH---HHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851 139 ALGLLAV-KPEHQQL---IVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (399)
Q Consensus 139 ~L~~l~~-~~~~~~~---i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (399)
.+..+.. +...... +.+ ......|..+++....-.. .+...++.++..+...+|..-..+.+.|.++.++
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~-----~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGP-----SVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccch-----HHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 5555555 4444333 344 4456666667766554333 7888899999999988898888888899999999
Q ss_pred Hhhc-C---CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851 214 ELLE-F---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (399)
Q Consensus 214 ~ll~-~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (399)
+.+. . ++.++....-.+|..||- +..+.+.+.+.+.++.+.+++.++
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 9888 4 357788888899999998 899999999999999999988763
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.74 E-value=0.0027 Score=64.73 Aligned_cols=259 Identities=17% Similarity=0.097 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc----CChhhH
Q 015851 77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQ 150 (399)
Q Consensus 77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~----~~~~~~ 150 (399)
...+..|++.|..++.. .+.+ -.-++|.++.++.++.. +||..|+.+|..+- .-+..-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCccc
Confidence 45678999999998873 3332 23469999999999887 78889999888865 223333
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc------------------Cchh----------HHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE------------------NSSI----------KTR 202 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~------------------~~~~----------~~~ 202 (399)
..+.-.-.+|.|-.++.+.+.. -++..-+..|..|+.. ++.. ...
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~ 573 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ 573 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence 3344444677777777764322 2333333333333311 1110 000
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
..-.++-.....++.++.+-|++..+..|.-|+... +++ --..-+++.|+..|++.|..+|..-...|..++..-.
T Consensus 574 ~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~-ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG- 649 (1431)
T KOG1240|consen 574 ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKE-KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG- 649 (1431)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhc-ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe-
Confidence 111122234455667777788888888888877521 111 1112357889999999999898766666665553211
Q ss_pred HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
..-.+..++|.|.+-|.++.+.|...|+.+|.-|+...--.+..+.+ +++....+|-+++.-+|+.++.+|..+++
T Consensus 650 --~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 650 --WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred --eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 11234557899999999999999999999999998643222233333 46677778888999999999999998887
Q ss_pred cCCC
Q 015851 363 VITV 366 (399)
Q Consensus 363 ~~~~ 366 (399)
.-.+
T Consensus 726 ~ls~ 729 (1431)
T KOG1240|consen 726 QLSA 729 (1431)
T ss_pred hhhh
Confidence 5554
No 117
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.72 E-value=0.00043 Score=67.47 Aligned_cols=241 Identities=18% Similarity=0.126 Sum_probs=162.2
Q ss_pred ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH-HhcCChhhHHHHHhcCcHHHHHHHHhcccc
Q 015851 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGALSHLVNLLKRHMD 171 (399)
Q Consensus 93 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~ 171 (399)
...-+...++.|+...|+.+...... ..+..+..+|. .+. .+..+. ...++.+...+.....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~-f~~~~~----~~v~~~~~s~~~~d~~ 555 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKID-FPGERS----YEVVKPLDSALHNDEK 555 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcC-CCCCch----hhhhhhhcchhhhhHH
Confidence 45566677788999999988775544 55666677776 332 111111 2244555555543322
Q ss_pred CccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCC
Q 015851 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNA 250 (399)
Q Consensus 172 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~ 250 (399)
. --....+-++.||+..+...+..+....+++.+-.++..+++..++.++..+.||..+..-+...+.+ ...
T Consensus 556 ~-------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~ 628 (748)
T KOG4151|consen 556 G-------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDR 628 (748)
T ss_pred H-------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccC
Confidence 1 12245788999999888888888888888888888888899999999999999999954444444555 455
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH-HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (399)
++.....+...++.....+++++..|+.....++. ..........+..++.+.+..++......+.|+.....+....+
T Consensus 629 l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~ 708 (748)
T KOG4151|consen 629 LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKI 708 (748)
T ss_pred chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 66666666667778888888888877765555554 33345678888999999999999999999999765555555666
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHH
Q 015851 330 VQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (399)
Q Consensus 330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L 357 (399)
.....++.+...-.-.....++.+..+|
T Consensus 709 ~~~~~~~~l~~~~~~~~a~~~~~~~~~l 736 (748)
T KOG4151|consen 709 FETEVMELLSGLQKLNRAPKREDAAPCL 736 (748)
T ss_pred ccchHHHHHHHHHHhhhhhhhhhhhhHH
Confidence 6665555554443333333444444443
No 118
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.68 E-value=0.00033 Score=51.13 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh--cCCChHHHHHHHHHHHHhhccChhhHHHHHhc
Q 015851 265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (399)
Q Consensus 265 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (399)
++...+.+|+|++..++.....+.+.|+++.+++.- +..+|.++++|.++|-|++.++++++..+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 467788999999998899999999999999999885 46789999999999999999999998877663
No 119
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.61 E-value=0.00018 Score=43.27 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=35.7
Q ss_pred hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (399)
++++..+.+.|+++.|+.++.+++++++..++++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778889999999999999999999999999999996
No 120
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.61 E-value=0.00018 Score=43.28 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=36.2
Q ss_pred hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 323 ~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
++++..+.+.|+++.|++++.+++++++..++++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477788899999999999999999999999999999973
No 121
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0038 Score=61.91 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=115.9
Q ss_pred HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHH
Q 015851 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (399)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 265 (399)
=.+|..++.+++ . ...++.+++...+.|.++++..-.-|.+.+...|+-. +- ++..+.+=+.++++.+
T Consensus 41 K~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~---lL--avNti~kDl~d~N~~i 108 (757)
T COG5096 41 KKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA---LL--AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH---HH--HHHHHHhhccCCCHHH
Confidence 346666775544 1 2235666777678888999888888888887655222 11 2556777788899999
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC
Q 015851 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (399)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~ 345 (399)
|..|+++++.+- .++... .+++++.+++.++++.||+.|+.++.++=. -....+.+.|.+..+..++.+.
T Consensus 109 R~~AlR~ls~l~--~~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 109 RGFALRTLSLLR--VKELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHhcC--hHHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHHhhCC
Confidence 999999998883 233322 357888999999999999999999999853 3445666788888888899899
Q ss_pred CHHHHHHHHHHHHHhhcc
Q 015851 346 DVQLREMSAFALGRLAQV 363 (399)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~ 363 (399)
+|.|..+|..+|..+...
T Consensus 179 dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 179 DPIVIANALASLAEIDPE 196 (757)
T ss_pred CchHHHHHHHHHHHhchh
Confidence 999999999999988877
No 122
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.51 E-value=0.027 Score=51.22 Aligned_cols=203 Identities=13% Similarity=0.178 Sum_probs=142.7
Q ss_pred HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh-----HHHHHhcCcHHHHHHHHhcccc
Q 015851 98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH-----QQLIVDNGALSHLVNLLKRHMD 171 (399)
Q Consensus 98 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~-----~~~i~~~~~i~~L~~~L~~~~~ 171 (399)
..+...|.+..|+..|..-+- +.|..++.++.++. ..... .+.+... -+.++..|-.+.+
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~f------------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~ 135 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDF------------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYE 135 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-H------------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGG
T ss_pred HHHHHhCHHHHHHHHhhhCCC------------cccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhc
Confidence 345567888888888876544 88889999999988 33322 3333332 1344444444433
Q ss_pred CccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc---
Q 015851 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--- 248 (399)
Q Consensus 172 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--- 248 (399)
.+ ++...+-..|..++. .+.....+.....+..+.+....++-++...|..++..+...++.....+...
T Consensus 136 ~~------dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d 208 (335)
T PF08569_consen 136 NP------DIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYD 208 (335)
T ss_dssp ST------TTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHH
T ss_pred Cc------cccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 32 566667777777774 55555567778888889999999999999999999999888778777777663
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH---HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (399)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (399)
.++..+..+|.+++--++..++..|+.+........ ..+-+..-+..++.+|++.+..++-+|.-+.--+.+.
T Consensus 209 ~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 209 RFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 456778889999999999999999999986433221 2223445688899999999999999999888877764
No 123
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.071 Score=53.82 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=131.6
Q ss_pred hhHHHHhhhhhc------chhhhHHHHHHHHHHHHHHcCC---hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchH
Q 015851 60 SAQVNVLNTTFS------WLEADRAAAKRATHVLAELAKN---EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (399)
Q Consensus 60 ~~~~~~L~~~l~------~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 130 (399)
+..++.+...+. ....++.-...|+..++++++- +..-....+.-+++-+...++++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g------------ 476 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG------------ 476 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh------------
Confidence 344555554443 2344566777888888888751 2222233344455556666666655
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc--C
Q 015851 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--G 207 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~ 207 (399)
-+|..|+|+++.++ .+=.....+. .++....+.|.++++- .++..++.+|..+..+.+.....+..+ +
T Consensus 477 ~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 477 YLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 68889999999999 3222222222 2566677777754333 688889999999997776655544433 3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHH-HHhhcCChhhHHHHHhcCCHHHHHHhhcC---C---CHHHHHHHHHHHHHhhc--
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGAL-RTLAFKNDENKNQIVECNALPTLILMLRS---E---DSAIHYEAVGVIGNLVH-- 278 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L-~~L~~~~~~~~~~~~~~~~~~~L~~ll~~---~---~~~v~~~a~~~L~~l~~-- 278 (399)
.+..|+.+.+.-+.+.....+..+ ...+..-......++++ ....+.+++.. . +.+=...|.++|..+..
T Consensus 548 ~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~-La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til 626 (1010)
T KOG1991|consen 548 IMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQN-LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTIL 626 (1010)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 444555555554444444333332 22222111222333332 45556666663 1 12223344555544431
Q ss_pred -CChhHHHHH---HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh
Q 015851 279 -SSPNIKKEV---LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (399)
Q Consensus 279 -~~~~~~~~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 325 (399)
+-+ ....+ ++..+++.+-.+|++.-.++-++++..+.+++...++.
T Consensus 627 ~s~e-~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~I 676 (1010)
T KOG1991|consen 627 LSLE-NHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEI 676 (1010)
T ss_pred HHHh-ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhccc
Confidence 111 11111 12334555556667777788888888888777554433
No 124
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.07 Score=51.90 Aligned_cols=138 Identities=22% Similarity=0.212 Sum_probs=91.5
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCCh
Q 015851 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCS 305 (399)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~ 305 (399)
.+.-.-+++.+.+...+.+.. .+..|-+++.+.+..+|..|+..+..++.+ ......+-.+ .+.++..|+ ..+.
T Consensus 309 VLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccch
Confidence 333334444433333333333 366677788888888888888888888865 3333444433 778888888 6788
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC-C--cchhHHHHH
Q 015851 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV-S--VLPAILIFI 376 (399)
Q Consensus 306 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~--~~~~~~~~~ 376 (399)
.++..|+-.|..+|. .++.+.+++ -+++.+.+.++.+|+..+--+.-|++.-.- . ++..+++++
T Consensus 384 SirrravDLLY~mcD--~~Nak~IV~-----elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCD--VSNAKQIVA-----ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred HHHHHHHHHHHHHhc--hhhHHHHHH-----HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 999999999999984 456555544 477777778999998887777777764332 2 344444444
No 125
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.41 E-value=0.0044 Score=49.19 Aligned_cols=135 Identities=13% Similarity=0.199 Sum_probs=102.8
Q ss_pred HHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCcccc
Q 015851 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (399)
Q Consensus 97 ~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~ 176 (399)
...|+..||+..|++++.+.... .++..++...++.++..|-+..-..-......++..++.++.....+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~------~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~--- 74 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEI------QPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDA--- 74 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCcc------CcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccc---
Confidence 45788999999999999876530 111226677888888888844332334555668889999998665322
Q ss_pred ccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHH
Q 015851 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243 (399)
Q Consensus 177 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 243 (399)
.+.+.++..|-++...++.....+...--++.|+..|...++.++..+...+..|....++.++
T Consensus 75 ---~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 75 ---SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred ---hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 8999999999999987777677777777889999999999999999999999888876555433
No 126
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.073 Score=54.77 Aligned_cols=229 Identities=15% Similarity=0.144 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
.+|..+-++|..++..+........ -+..+.+.|.+....... ..+...+.+|..|....+.--..+. ...|+
T Consensus 669 ~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs~~~----~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~ 741 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQSSSS----PAQASRLKCLKRLLKLLSAEHCDLI-PKLIP 741 (1176)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccHHHHHHH-HHHHH
Confidence 7899999999999966554433322 244444444433221111 5667777777777754441111122 23344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhc---CChhh---HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851 211 PLVELLEFTDTKVQRAAAGALRTLAF---KNDEN---KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~---~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (399)
-++-.+++.+...++.+..+|..+.. ..+.+ ....++. +++.+...+-.+...+....+-++..+........
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444588888999999999888882 01111 1112221 23333333333333333333555665554322322
Q ss_pred HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
....-.+.++.+..+|.+++++++..|+..+..++...|+..-.-....+++.+..++++....++..+...|-.|.+..
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 33333455666667788999999999999999998777765544444557899999998888999999999999988776
Q ss_pred CCC
Q 015851 365 TVS 367 (399)
Q Consensus 365 ~~~ 367 (399)
.-+
T Consensus 901 g~~ 903 (1176)
T KOG1248|consen 901 GAE 903 (1176)
T ss_pred CHH
Confidence 643
No 127
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.40 E-value=0.0018 Score=55.45 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhc
Q 015851 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (399)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~ 156 (399)
-...|+..|-.+++||+.|..|.+..+.-.|..+|+..+.. .+| +.+|..++.+++.+. ++++....+...
T Consensus 66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~------r~~-E~LRLtsLGVIgaLvK~d~~evi~fLl~t 138 (262)
T PF04078_consen 66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKT------RPF-EYLRLTSLGVIGALVKTDDPEVISFLLQT 138 (262)
T ss_dssp HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----S------HHH-HHHHHHHHHHHHHHHTT--HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccc------ccc-chhhHhHHHHHHHHHcCCcHHHHHHHHhh
Confidence 35567777788899999999999999999999999865542 222 278999999999999 577888888999
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH------HHH-hcCChHHH-HHhhcCCCHHHHHHHH
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVR-MEGGIPPL-VELLEFTDTKVQRAAA 228 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~-~~~~i~~L-~~ll~~~~~~v~~~a~ 228 (399)
+++|..++.++.+++ --+..|..++..+..++..... .+. -..++..+ ..+...+++.+..+..
T Consensus 139 EiiplcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhII 210 (262)
T PF04078_consen 139 EIIPLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHII 210 (262)
T ss_dssp THHHHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH
T ss_pred chHHHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 999999999998764 3444566666666644332211 111 11233333 3345677899999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHH-----hhcCCCHHHHHHHHHHHHHh
Q 015851 229 GALRTLAFKNDENKNQIVECNALPTLIL-----MLRSEDSAIHYEAVGVIGNL 276 (399)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~-----ll~~~~~~v~~~a~~~L~~l 276 (399)
++...|+. ++..+..+... +|..++ .+-.+|+.++..-...+.|+
T Consensus 211 rCYlRLsd-nprar~aL~~~--LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 211 RCYLRLSD-NPRAREALRQC--LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHTT-STTHHHHHHHH--S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHHcc-CHHHHHHHHHh--CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999998 67777666542 222111 11124777777777777666
No 128
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.39 E-value=0.0061 Score=48.37 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=96.7
Q ss_pred HHHhcCChHHHHHhhcCCC------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 015851 202 RVRMEGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVI 273 (399)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L 273 (399)
.+...+|+..|+.++.++. .++...++.++..|..+. ...=...+..++..++...+.. +..+...|+..|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 4777899999999998866 378888999999988743 3223455555777777777653 678999999999
Q ss_pred HHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhH
Q 015851 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (399)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 326 (399)
-+++.+++.....+...=.++.|+..|+.++++++.+|...+..+....++.+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 99998766655555555568999999999999999999998888876655443
No 129
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.029 Score=53.19 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 303 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
.+.-+|..|+.+|+.++-...+ .+....+...|..++.+.|.++|..|..+|.++-
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3456788888999887643211 2223334567888999999999999999999987
No 130
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.036 Score=54.20 Aligned_cols=214 Identities=15% Similarity=0.206 Sum_probs=134.6
Q ss_pred hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHH
Q 015851 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (399)
Q Consensus 106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a 185 (399)
+..+..+|.+.++ .++..|+.+|.+++.+|..-.. +...+++++.+.++. .+....
T Consensus 245 i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdn-------nvklIv 300 (948)
T KOG1058|consen 245 IRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDN-------NVKLIV 300 (948)
T ss_pred HHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCc-------chhhhh
Confidence 5556667766655 6667777777777766654332 345566666665554 444445
Q ss_pred HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-------
Q 015851 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML------- 258 (399)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll------- 258 (399)
+.-|..+...+.. +. .|.+--++..|.+++.+++..++.....|+.. .+...++. .|-+=+
T Consensus 301 ldrl~~l~~~~~~----il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvediv~-----~Lkke~~kT~~~e 368 (948)
T KOG1058|consen 301 LDRLSELKALHEK----IL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIVQ-----FLKKEVMKTHNEE 368 (948)
T ss_pred HHHHHHHhhhhHH----HH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHHH-----HHHHHHHhccccc
Confidence 5555555532222 11 34555677888999999999999988888863 22222222 111111
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 015851 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (399)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L 338 (399)
.+++.+.|.....+++..+...++.. +.+++.+++.+.+.++......+..+.......|..+..+++ .|
T Consensus 369 ~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-----~l 438 (948)
T KOG1058|consen 369 SDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-----KL 438 (948)
T ss_pred cccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH-----HH
Confidence 11344678888999999887666653 346899999999888776666666666666555655555443 34
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhhccCC
Q 015851 339 IEMLQ-SPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 339 ~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+.-+. -.+.++-+.|+|+++..+....
T Consensus 439 ~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 439 LETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 44332 2466788889999998887655
No 131
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.33 E-value=0.0043 Score=63.29 Aligned_cols=219 Identities=15% Similarity=0.025 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh---cCchhHHHHHhcC
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEG 207 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~ 207 (399)
+.+..|+..|..++..-..-..+ -.++|+++.++.+... .++..|+.+|..+.. .-+.....+...=
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a--------~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY 507 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEA--------DVRATALETLTELLALVRDIPPSDANIFPEY 507 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchH--------HHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence 67889999999999332222222 2378999999998877 888888888877763 2223333344455
Q ss_pred ChHHHHHhhcCC-CHHHHHHHHHHHHHhhcC-----------------C-hhh-----------HHHHHhcCCHHHHHHh
Q 015851 208 GIPPLVELLEFT-DTKVQRAAAGALRTLAFK-----------------N-DEN-----------KNQIVECNALPTLILM 257 (399)
Q Consensus 208 ~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~-----------------~-~~~-----------~~~~~~~~~~~~L~~l 257 (399)
.+|.|-.++.+. ...+|..-+..|+.|+.. + ++. ...+.+ ++=+....+
T Consensus 508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-~V~~~v~sL 586 (1431)
T KOG1240|consen 508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-TVEQMVSSL 586 (1431)
T ss_pred hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-HHHHHHHHH
Confidence 678888888774 455666666777666630 0 000 011111 112234456
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 015851 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (399)
Q Consensus 258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~ 337 (399)
+.++++-|+...+..|.-||.-.... =-+.=+++.|+.+|+..++.+|..=...|..++.. .+ ..-.+..++|.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~--VG-~rs~seyllPL 660 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF--VG-WRSVSEYLLPL 660 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEE--Ee-eeeHHHHHHHH
Confidence 66667778877777777776321110 00112578999999988888776655555544432 11 12245667899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 338 LIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
|.+-+.++.+.|...|..+|..|++..--
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999987663
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.02 Score=48.93 Aligned_cols=197 Identities=18% Similarity=0.193 Sum_probs=123.6
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
....++.|...+...+..+.+|.+|..+|..+. +++. ++.+-++.+++-. .+++-+..
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~---------~~~l~k~~~dp~~------------~v~ETc~l 122 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPES---------LEILTKYIKDPCK------------EVRETCEL 122 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhh---------HHHHHHHhcCCcc------------ccchHHHH
Confidence 345678888888777788899999999999887 4443 5556666655444 34444555
Q ss_pred HHHHhc-CC---------------hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHH
Q 015851 139 ALGLLA-VK---------------PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (399)
Q Consensus 139 ~L~~l~-~~---------------~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 202 (399)
++..+- .+ |... ...+-+..+-..|.+..... --+..++..|.|+-
T Consensus 123 Ai~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l------~~Ry~amF~LRn~g--------- 184 (289)
T KOG0567|consen 123 AIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPL------FERYRAMFYLRNIG--------- 184 (289)
T ss_pred HHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhH------HHHHhhhhHhhccC---------
Confidence 555543 11 1111 01111333333333322210 11222333333332
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCC
Q 015851 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSS 280 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 280 (399)
....|..|++-+..++.-.|..++.+++.|-+ + -.+|.|.+.|.+ +++-+|..|+.+|+.++.
T Consensus 185 --~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-- 249 (289)
T KOG0567|consen 185 --TEEAINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-- 249 (289)
T ss_pred --cHHHHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--
Confidence 01235566777777888899999999998876 2 258888888765 578999999999999973
Q ss_pred hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
++. ++.|.+++..+.+-+++.+..+|..+-
T Consensus 250 e~~---------~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 EDC---------VEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHH---------HHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 443 667778888888888888888887664
No 133
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.32 E-value=0.027 Score=51.22 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=146.5
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH-----HHHh--cCChHHHHHhhcCCCHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-----RVRM--EGGIPPLVELLEFTDTKV 223 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~--~~~i~~L~~ll~~~~~~v 223 (399)
..+...+.+..|+..|..-+- +.+..+..+..++.......+. .+.. ...+..|+.-- +++++
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~f--------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~di 139 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDF--------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDI 139 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-H--------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTT
T ss_pred HHHHHhCHHHHHHHHhhhCCC--------cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccc
Confidence 345566788889988887766 8889999999999865433321 2221 12233333332 34666
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC---CcHHHHHhh
Q 015851 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLL 300 (399)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL 300 (399)
.-.+...|+..+. .+.....+.....+-.+...+..++-++...|..++..+-...+......+..+ ++.....+|
T Consensus 140 al~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 140 ALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677777888887 677788888888888899999999999999999999997766666666666544 566778889
Q ss_pred cCCChHHHHHHHHHHHHhhccChhhH----HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 301 SSCCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.+++.-++..++..|+.+.. ++.+. +.+.+..-+..+..+|++++..++-.|-.+...+..++..
T Consensus 219 ~s~NYvtkrqslkLL~elll-dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 219 ESSNYVTKRQSLKLLGELLL-DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp T-SSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred cCCCeEeehhhHHHHHHHHH-chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999999999999985 44443 3344466788999999999999999999999999988654
No 134
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0018 Score=61.89 Aligned_cols=207 Identities=16% Similarity=0.161 Sum_probs=126.9
Q ss_pred HHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-----hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (399)
Q Consensus 159 i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (399)
....++.+.+.++ .++..|...++-.....+ ...+.-....++..+...+.+.+..+|..|+.+|+.
T Consensus 236 Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 236 YSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE 307 (823)
T ss_pred HHHHHHHhcchHH--------HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch
Confidence 4556667776665 777777555554443221 111111223467778888889999999999999987
Q ss_pred hhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh--h-----------cCChhHHHHHHHCCCcHHHHHhh
Q 015851 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL--V-----------HSSPNIKKEVLAAGALQPVIGLL 300 (399)
Q Consensus 234 L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l--~-----------~~~~~~~~~~~~~~~l~~L~~lL 300 (399)
+-.-.++...+-.+...+..+-..- ...+......++- + ...+.....++.+|+-..++.-|
T Consensus 308 ~~~vSee~i~QTLdKKlms~lRRkr-----~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 308 FEQVSEEIIQQTLDKKLMSRLRRKR-----TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhh-----hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeec
Confidence 7764444444444432222111100 0000111111111 0 00122335577788888888888
Q ss_pred cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC--CcchhHHHHHhh
Q 015851 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV--SVLPAILIFIII 378 (399)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~ 378 (399)
...=.+||.+|+..++.|+...|.-... .+..|++++++....||..|..+|..|+.+..- ..++.++..+..
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D 457 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLED 457 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHh
Confidence 7777799999999999999766654332 367899999999999999999999999987553 255555555554
Q ss_pred ccccH
Q 015851 379 NECQL 383 (399)
Q Consensus 379 ~~~~~ 383 (399)
.+..+
T Consensus 458 ~s~dv 462 (823)
T KOG2259|consen 458 RSVDV 462 (823)
T ss_pred cCHHH
Confidence 44444
No 135
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.31 E-value=0.062 Score=53.69 Aligned_cols=228 Identities=15% Similarity=0.126 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851 75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 153 (399)
+-+....+|.+++...+.. +.+.. +.+ -++...+..+.-+.+ |-++..|+++++..+...-...
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~-----------~~~ki~a~~~~~~~~~~~vl~~-- 526 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVP-----------PPVKISAVRAFCGYCKVKVLLS-- 526 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCC-----------CchhHHHHHHHHhccCceeccc--
Confidence 3344455888888866553 22211 111 123333444433222 1466677777777762211111
Q ss_pred HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHH
Q 015851 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGAL 231 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L 231 (399)
...+++..|+++....++ ++....+.+|+..+..++.... ..+....|.++.+. .+++|.+...+-.++
T Consensus 527 ~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f 597 (1005)
T KOG2274|consen 527 LQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLF 597 (1005)
T ss_pred cchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHH
Confidence 123466667777766666 7888888999999977776443 34456677776664 346687877788888
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh-cCCChH
Q 015851 232 RTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSE 306 (399)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~ 306 (399)
-.|+. ...+...+. ...+|.+++.|..+. .....-++..|..+.+..+.-....+-.-+++++.+.. .+.+..
T Consensus 598 ~el~q-~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~ 675 (1005)
T KOG2274|consen 598 EELLQ-IAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHE 675 (1005)
T ss_pred HHHHH-HHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChH
Confidence 88886 333333333 347999999998765 67788888888888776555444444555777777774 567778
Q ss_pred HHHHHHHHHHHhhccChhhHHH
Q 015851 307 SQREAALLLGQFAATDSDCKVH 328 (399)
Q Consensus 307 v~~~a~~~L~~l~~~~~~~~~~ 328 (399)
...++..||..+.+.+.+....
T Consensus 676 tlQ~~~EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 676 TLQNATECLRALISVTLEQLLT 697 (1005)
T ss_pred HHHhHHHHHHHHHhcCHHHHHh
Confidence 8888999999888765544333
No 136
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.11 Score=53.04 Aligned_cols=270 Identities=14% Similarity=0.123 Sum_probs=147.6
Q ss_pred HhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-h-hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHH
Q 015851 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (399)
Q Consensus 55 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~ 132 (399)
....+..+++.|.+.+ .+.|..+|-.|+..++.++.. | +..+. .+...++++.-.++. ..
T Consensus 335 v~eivE~vie~Lls~l--~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~-----------~a 396 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSAL--SDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDD-----------SA 396 (1133)
T ss_pred cHHHHHHHHHHHHHhc--cCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCch-----------hH
Confidence 3456677777777776 556777899999999999985 5 22222 344455544432221 44
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (399)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (399)
-..++-+|+.++ ..--.-..+. ..+|.+++-+.-...-........++..+|.++|.+++........-......+.
T Consensus 397 WHgacLaLAELA~rGlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~ 474 (1133)
T KOG1943|consen 397 WHGACLALAELALRGLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA 474 (1133)
T ss_pred HHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 558899999999 4322222221 2456666555433221111111278999999999999765543211111222222
Q ss_pred -HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851 212 -LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (399)
Q Consensus 212 -L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (399)
+...+-+.+..+|+.|..++-...-..... ..+++ |+...+.-.-..+.++-..+..-....+..+..+
T Consensus 475 LL~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~--- 544 (1133)
T KOG1943|consen 475 LLIVALFDREVNCRRAASAALQENVGRQGNF------PHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV--- 544 (1133)
T ss_pred HHHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH---
Confidence 223344566788998888876555311110 11222 2222222222334444444443333334333333
Q ss_pred CCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851 291 GALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (399)
Q Consensus 291 ~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 360 (399)
++.++.. +.+-+..+++.++++|.+++...+ +....+.++++++..-+++...+..+..+.+.+
T Consensus 545 --f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 545 --FNHLLTKKVCHWDVKIRELAAYALHKLSLTEP----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred --HHHHHhcccccccHHHHHHHHHHHHHHHHhhH----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 3333333 556678899999999999864333 344556677777777777777776554444433
No 137
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.20 E-value=0.0033 Score=45.89 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHhhC
Q 015851 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQ 343 (399)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~g~v~~L~~ll~ 343 (399)
|..++.+|..++..-+.. ..-.-..++++++..+.+.++.+|..||.+|.|++.. .+..+.. ..+++.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 556677777776543333 2222345789999999999999999999999999853 2233332 457889999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 015851 344 SPDVQLREMSAFALGRLA 361 (399)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~ 361 (399)
++++.|+..| ..|-++-
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 9999998776 5555443
No 138
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=97.20 E-value=0.034 Score=51.54 Aligned_cols=266 Identities=17% Similarity=0.134 Sum_probs=147.6
Q ss_pred hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 153 (399)
+....+|..++--|+.-+.+++.+..+..+|.+..++..+.+.... +..-..++.++.-++.+......+
T Consensus 33 ~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d----------~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD----------DILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred CCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch----------HHHHHHHHHHHHHHccCCcchhhh
Confidence 4455789999999999999999999999999999999999655441 112223344444555555555555
Q ss_pred HhcCcHHHHHHHHhccc--cCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh---------cCCCHH
Q 015851 154 VDNGALSHLVNLLKRHM--DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL---------EFTDTK 222 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~--~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---------~~~~~~ 222 (399)
.+.+....++.++.... +... +....-.. +++. ..+ ..+..+...+ ......
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~-----~~~~~~~~---~lsk----~~~-----~~~~~~~~~~~~~~~~~~~~~~~ls 165 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPS-----DSDSSRKK---NLSK----VQQ-----KSRSLCKELLSSGSSWKSPKPPELS 165 (361)
T ss_pred hchhHHHHHHHHhcccccccccc-----chhhhhhh---hhhH----HHH-----HHHHHHHHHHhccccccccCCcccc
Confidence 56666777788887211 1100 00000000 0000 000 0011111111 012233
Q ss_pred HHHHHHHHHHHhh--------------cCChhhHHHHHhcCCHHHHHHhhcC----C------------CHHHHHHHHHH
Q 015851 223 VQRAAAGALRTLA--------------FKNDENKNQIVECNALPTLILMLRS----E------------DSAIHYEAVGV 272 (399)
Q Consensus 223 v~~~a~~~L~~L~--------------~~~~~~~~~~~~~~~~~~L~~ll~~----~------------~~~v~~~a~~~ 272 (399)
-+..|+.++-.++ ...+..++++...|++..++..+.+ . +......++++
T Consensus 166 p~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~I 245 (361)
T PF07814_consen 166 PQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSI 245 (361)
T ss_pred cccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHH
Confidence 4445555555552 1123456778888899998888751 1 11345668888
Q ss_pred HHHhhcCChhHHHHHHHC--CCcHHHH-HhhcC---CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh----
Q 015851 273 IGNLVHSSPNIKKEVLAA--GALQPVI-GLLSS---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---- 342 (399)
Q Consensus 273 L~~l~~~~~~~~~~~~~~--~~l~~L~-~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll---- 342 (399)
|-+.+..++.+....... +.+..+. .++.. ........++..+.|++..++.....+...++...+..+.
T Consensus 246 LEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~ 325 (361)
T PF07814_consen 246 LESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFF 325 (361)
T ss_pred HHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhc
Confidence 888886666655555543 2233222 22322 2234467788999999988876666665543222211111
Q ss_pred ----------CCCCHHHHHHHHHHHHHhhccCCC
Q 015851 343 ----------QSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 343 ----------~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.....++.-.+..+|.|++++++.
T Consensus 326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 326 CVLSLPNYVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred ccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence 123455667788888888877653
No 139
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.044 Score=53.50 Aligned_cols=141 Identities=22% Similarity=0.229 Sum_probs=99.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
++=+.+-+++.+.+|-+|.....+++---.+... .+++..|+.. .++.+.+||+.|.-+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 4445667778888888887766655422221111 2456667766 56779999999999999998776654
Q ss_pred HHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 286 ~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
++..+++|. +-++.||-.++.+|+-.|++. ..+. ++..|-.++.++..-||+.|+-++..+....
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 566777775 678899999999999988753 2222 2455666777888889999999999887666
Q ss_pred CCCcch
Q 015851 365 TVSVLP 370 (399)
Q Consensus 365 ~~~~~~ 370 (399)
.+...|
T Consensus 656 t~~~~p 661 (929)
T KOG2062|consen 656 TEQLCP 661 (929)
T ss_pred ccccCc
Confidence 554333
No 140
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.17 E-value=0.093 Score=53.19 Aligned_cols=255 Identities=17% Similarity=0.191 Sum_probs=154.1
Q ss_pred HHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (399)
Q Consensus 100 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~ 179 (399)
+.+.||+..++.++.+.....+ +.++....+..|...+.-+.+|+.+.+.|+++.|+..+...-.........
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~-------~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~ 185 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSR-------GRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQA 185 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccC-------cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccc
Confidence 4478999999999987543211 236667788888888888999999999999999999986432111100001
Q ss_pred HHHHHHHHHHHHHhhcCch--hH--HHHHhc--------CChHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhhHH
Q 015851 180 SVIRRAADAITNLAHENSS--IK--TRVRME--------GGIPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENKN 243 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~--~~--~~~~~~--------~~i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~~ 243 (399)
++.+..+.++..+...... .. ...... .-+..+++.+.++ ++.+....+++|.+|+.++++..+
T Consensus 186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 6667777776666632211 00 000111 1256666666653 588999999999999998888777
Q ss_pred HHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCC------hhHHHHHHHCCCcHHHHHhhcCCC--------hH
Q 015851 244 QIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSCC--------SE 306 (399)
Q Consensus 244 ~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~--------~~ 306 (399)
.+++. +...+++=.-+ .++- ...+.+++.++.+- ...+..+++.|+++..+.+|...- ++
T Consensus 266 ~Lv~~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~e 342 (802)
T PF13764_consen 266 ALVEH--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPE 342 (802)
T ss_pred HHHHH--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHH
Confidence 77765 23333221111 1111 12245555555321 356788899999999998886322 22
Q ss_pred H--------HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCC
Q 015851 307 S--------QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 307 v--------~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
- ...++..|.-++.+....+.. ...++++.+-.+=+ +.+..+=..|-.+|-.++.+..
T Consensus 343 Wk~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 343 WKEFLSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 2 233667777777654444333 55566655544443 2345555556666666666443
No 141
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.13 E-value=0.0051 Score=50.91 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHh
Q 015851 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (399)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~l 341 (399)
++.+|.+++.+++.++...+... ...++.+...|.++++.+|..|+.+|..|...+... ....++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 57899999999999997655443 235889999999999999999999999998643211 112223677788
Q ss_pred hCCCCHHHHHHHHHHHHHhhcc-CCCC
Q 015851 342 LQSPDVQLREMSAFALGRLAQV-ITVS 367 (399)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~~-~~~~ 367 (399)
+.+++++|+..|..++..+... .++.
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchH
Confidence 8999999999999999999988 5543
No 142
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.066 Score=52.70 Aligned_cols=209 Identities=14% Similarity=0.072 Sum_probs=140.9
Q ss_pred HHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHH
Q 015851 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (399)
Q Consensus 108 ~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~ 187 (399)
-|.++|++.... ..+...-++++.++.+.+... .++.+++.+-+.+. ++++.+--
T Consensus 39 dL~~lLdSnkd~-----------~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~--------EVKkLVyv 93 (968)
T KOG1060|consen 39 DLKQLLDSNKDS-----------LKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNI--------EVKKLVYV 93 (968)
T ss_pred HHHHHHhccccH-----------HHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCH--------HHHHHHHH
Confidence 356777765542 444455567777776655433 67888888877766 77777666
Q ss_pred HHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 015851 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (399)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 267 (399)
-|...+...+.. ..--|..+-+-|+++|+.+|..|+++|..+=. +.. ..=.+-.+-++..+..+-||.
T Consensus 94 YLlrYAEeqpdL-----ALLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~I-----aPI~llAIk~~~~D~s~yVRk 161 (968)
T KOG1060|consen 94 YLLRYAEEQPDL-----ALLSINTFQKALKDPNQLIRASALRVLSSIRV--PMI-----APIMLLAIKKAVTDPSPYVRK 161 (968)
T ss_pred HHHHHhhcCCCc-----eeeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhH-----HHHHHHHHHHHhcCCcHHHHH
Confidence 666666544431 12336777788999999999999888876654 111 110122233455678899999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (399)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 347 (399)
.|+.+|-.+-.-+++.... .+..+-.+|...++.|...|+.+...+| |+..+.+..+ ...|++++.+-+.
T Consensus 162 ~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evC---PerldLIHkn--yrklC~ll~dvde 231 (968)
T KOG1060|consen 162 TAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIHKN--YRKLCRLLPDVDE 231 (968)
T ss_pred HHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhhHH--HHHHHhhccchhh
Confidence 9999999997655655443 3566677788889999999988888876 5665655554 6788888876444
Q ss_pred HHHHHHHHHHHHhhcc
Q 015851 348 QLREMSAFALGRLAQV 363 (399)
Q Consensus 348 ~v~~~a~~~L~~l~~~ 363 (399)
==+.....+|...|++
T Consensus 232 WgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARH 247 (968)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4455677777777754
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.11 E-value=0.06 Score=48.68 Aligned_cols=181 Identities=21% Similarity=0.184 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhhHHHHHhcCCHHHHH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI 255 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~~~~L~ 255 (399)
..++.++..+.++....... ..+.. ...+..+...++.+..+-+..|++++.-++.. .......+.+. ..|.|.
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~ 135 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHH
Confidence 67777888777777543321 22221 23567777888887776777788887777653 22444555553 678888
Q ss_pred HhhcCC--CHHHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHH--hhcC----------CChHHHHHHHHHHHHh
Q 015851 256 LMLRSE--DSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIG--LLSS----------CCSESQREAALLLGQF 318 (399)
Q Consensus 256 ~ll~~~--~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~--lL~~----------~~~~v~~~a~~~L~~l 318 (399)
+.+.+. ...+|..++.+|+-++. ..+......+ ..+..+.. ..+. +++.+...|+.+.+-|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 888765 34677777777776653 2222222111 12331211 1211 1245777777666655
Q ss_pred hccChhh-HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 319 AATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 319 ~~~~~~~-~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
...-+.. ..... ...+|.|..+|.+++..||.+|..+|.-|.+...
T Consensus 214 lt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 214 LTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 5443332 22222 3358999999999999999999999887765443
No 144
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.16 Score=49.46 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=78.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
..+..|-.++.+..+.+|.-++..+..|++ .......+..+ ...++..|+ ..|..+|..|+..|..+|. .++.+
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s-s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLAS-SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAK 403 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHh-ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHH
Confidence 346667777888888888888888888887 33334444444 777888888 6789999999999999984 33433
Q ss_pred HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (399)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (399)
. ++..++++|.+.++.++++.+.=+.-+++.
T Consensus 404 ~-----IV~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 404 Q-----IVAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred H-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 3 367888899889999998877766666654
No 145
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.08 E-value=0.0036 Score=45.74 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH--HCCCcHHHHHhhc
Q 015851 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL--AAGALQPVIGLLS 301 (399)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~ 301 (399)
|..++.+|...+.+-+.......+. +++.++..+.+++..||..||.+|.|++... +..++ -..+++.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 4556677777766544444444443 8899999999999999999999999998542 23333 2467788888888
Q ss_pred CCChHHHHHHHHHHHHh
Q 015851 302 SCCSESQREAALLLGQF 318 (399)
Q Consensus 302 ~~~~~v~~~a~~~L~~l 318 (399)
.+++.|+..| ..|.++
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 8888877666 455544
No 146
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.07 E-value=0.03 Score=56.14 Aligned_cols=192 Identities=16% Similarity=0.108 Sum_probs=130.2
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (399)
..+.++..+++... +++....+.+..+-..++...........+|.+..+-....+.++....+.+..++..
T Consensus 438 llp~~~~~l~de~~--------~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q 509 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDP--------IVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ 509 (759)
T ss_pred cChhhhhhcchhhH--------HHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence 45555556665554 6777777766666555554444566677888899888877899999999999988862
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (399)
.+ ..+.....-+.+...+.+..-+++..|+..+..++.... ..-.....++.++.....++...|...+.++.-
T Consensus 510 --~~-~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~ 583 (759)
T KOG0211|consen 510 --LG-VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHE 583 (759)
T ss_pred --hh-hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHH
Confidence 22 233333344455555556667889999988888874322 111223457777777766677777777777775
Q ss_pred hhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 318 l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++ +..-..+....++|.+.++..++.+.||-+++..|..+...-..
T Consensus 584 la---~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 584 LA---EVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred HH---HHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 54 23334555566789999999999999999999999888765543
No 147
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.021 Score=55.88 Aligned_cols=251 Identities=17% Similarity=0.136 Sum_probs=152.1
Q ss_pred hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851 75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 153 (399)
.|.+.+.-.---+.+.+.. |+.. .++++.++.=..++++ .+|..|.+.++.+....- .
T Consensus 61 ~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np------------~iR~lAlrtm~~l~v~~i-~--- 119 (734)
T KOG1061|consen 61 RDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNP------------LIRALALRTMGCLRVDKI-T--- 119 (734)
T ss_pred CCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCH------------HHHHHHhhceeeEeehHH-H---
Confidence 3444444444456666653 5432 3445555554444444 777777777776663221 1
Q ss_pred HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (399)
..+..++...+++.+. .++..+.....++-..++ ..+...|.++.|.+++.++++.+...|+.+|..
T Consensus 120 --ey~~~Pl~~~l~d~~~--------yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 120 --EYLCDPLLKCLKDDDP--------YVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred --HHHHHHHHHhccCCCh--------hHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 1246777777777766 777877777777775444 356678999999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHH
Q 015851 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (399)
Q Consensus 234 L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 313 (399)
+...+++..........+. ++|..-+....+.-+.+|.+++...+..-.. ...++..+...|++.++.+...+..
T Consensus 187 I~e~~~~~~~~~l~~~~~~---~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e--a~~i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLIN---KLLEALNECTEWGQIFILDCLAEYVPKDSRE--AEDICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred HHHhCCCCCcccccHHHHH---HHHHHHHHhhhhhHHHHHHHHHhcCCCCchh--HHHHHHHhhhhhccCCcceEeehHH
Confidence 9975443111111111222 2333333344444555555565433321111 1235777788888888888888888
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++.++...-+. .....-...-++|+.++.+.. +++..|..-+.-+-...+.
T Consensus 262 v~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 262 VILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH
Confidence 88888754333 233333445677777776655 7777776666655555553
No 148
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.04 E-value=0.0018 Score=48.63 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=61.4
Q ss_pred CChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 207 ~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
..+..|+.+| .+.++.+...||.-|+.++...|.++..+-+.|+=..++.++.+++++|+.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3467888888 44578889999999999999899998888888999999999999999999999999988763
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.049 Score=54.32 Aligned_cols=157 Identities=10% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (399)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (399)
...-.++..++.+.+... .++.+++.+...+. ++++..-.-|.+.+..+|.-. + -.+..+.
T Consensus 38 dAmK~iIa~M~~G~dmss------Lf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~~~--l---LavNti~ 98 (757)
T COG5096 38 DAMKKIIAQMSLGEDMSS------LFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPELA--L---LAVNTIQ 98 (757)
T ss_pred HHHHHHHHHHhcCCChHH------HHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHHHH--H---HHHHHHH
Confidence 344456677775444333 45566666663333 777766666777776555211 1 2356677
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (399)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (399)
.=+.++|+.+|..|++++..+=. ++ +.. .+++.+.+++.++++.||..|+-++.++-.-++ ...-+.|.+
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~--~e----l~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~ 168 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRV--KE----LLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLI 168 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcCh--HH----HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHH
Confidence 77888888888888888776653 22 222 256678888888888888888888888864333 334456677
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 294 QPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
..+..++.+.+|.+..+|..+|..+.
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 77778888888888888888888775
No 150
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.02 Score=60.05 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
.-++.-++.++... .-+..-.-...||.|.++=-+++..++..-..+...|..+.......... .++.-|+.-|.+..
T Consensus 975 ~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 975 KGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKE 1052 (1702)
T ss_pred cchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchh
Confidence 44555555555322 11112223467888888888889999887776666666532333333333 36677777777888
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHH--CCCcHHHHHhhcCCChHHHHH---HHHHHHHhhccC--h---hhHHHHHhc
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAATD--S---DCKVHIVQR 332 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~---a~~~L~~l~~~~--~---~~~~~l~~~ 332 (399)
-.||+.+|-+|..|..+.+.. .+.+ ......+.+.+++-...+|+. ++.+|+.++... . ..-+.+.+
T Consensus 1053 wRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~- 1129 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD- 1129 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-
Confidence 899999999999999764432 2211 123334444444444456655 556677666431 1 11111211
Q ss_pred CCHHHHHH--hhCCCCHHHHHHHHHHHHHhhccCCCC---cchhHHHHH--hhccccHHHHHHHH
Q 015851 333 GAVRPLIE--MLQSPDVQLREMSAFALGRLAQVITVS---VLPAILIFI--IINECQLEVLAFVL 390 (399)
Q Consensus 333 g~v~~L~~--ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~l 390 (399)
.++|.|++ ++ ++-+++|..+...+..++++++.. ..|.++..+ ...+.+.+++-++-
T Consensus 1130 ~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1130 IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHH
Confidence 23454443 22 678999999999999999999865 234443333 33444555555443
No 151
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.01 E-value=0.046 Score=54.89 Aligned_cols=276 Identities=17% Similarity=0.148 Sum_probs=183.5
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L 140 (399)
...+...++. ++..+.+|..+..-+++++..-.. .....+.++.+.++..++.. .+|..|...+
T Consensus 237 elr~~~~~lc--~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd------------sVr~~a~~~~ 300 (759)
T KOG0211|consen 237 ELRPIVQSLC--QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD------------SVREAAVESL 300 (759)
T ss_pred HHHHHHHhhc--cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh------------hHHHHHHHHH
Confidence 3344444444 566778888888888888875222 56678899999999988766 6788888888
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (399)
Q Consensus 141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (399)
.++...-.... -......+.+++..++.+. .+........+.+...-.. .......++....++++..
T Consensus 301 ~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~--------~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~ 368 (759)
T KOG0211|consen 301 VSLLDLLDDDD-DVVKSLTESLVQAVEDGSW--------RVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEE 368 (759)
T ss_pred HHHHHhcCCch-hhhhhhhHHHHHHhcChhH--------HHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchh
Confidence 88772111110 1112356677777766654 5556555555555532111 1223355778888888888
Q ss_pred HHHHHHHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851 221 TKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (399)
.+.+..++.-...++... .+....+....++|.+-.+..+.+..++...+..+..+.-..+. .-.-....+.++..
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k---~~ti~~llp~~~~~ 445 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK---ERTISELLPLLIGN 445 (759)
T ss_pred hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc---CcCccccChhhhhh
Confidence 888877776666665421 12233445555688888888888999998888888877532221 11123467788888
Q ss_pred hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 300 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
++...+.++.+..+.+..+-...+..-........+|.+..+-.....+++.+..+.+..++......
T Consensus 446 l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~ 513 (759)
T KOG0211|consen 446 LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVE 513 (759)
T ss_pred cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhH
Confidence 88889999999998777665444444445555667788888887778899999999999888777643
No 152
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.98 E-value=0.087 Score=47.66 Aligned_cols=183 Identities=20% Similarity=0.190 Sum_probs=110.5
Q ss_pred hhhHHHHHHHHHHHHHHcCChhHHHHHH--hCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-C-C-hh
Q 015851 74 EADRAAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-K-PE 148 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~-~-~~ 148 (399)
+.....|..++..+.++.......+.+. ...++..+...++.... +=+..|+.+++-++ . + ..
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EEQALAARALALLALTLGAGE 121 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHHhhhcCCCc
Confidence 3456789999999999886433323332 22467777777776554 23456778888877 3 1 22
Q ss_pred hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh---cCchhHHHHHhcCChHHHH--Hhhc------
Q 015851 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLV--ELLE------ 217 (399)
Q Consensus 149 ~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~--~ll~------ 217 (399)
....+.+ ...|.|...+.+..... .++..++.+|+-++. .++...... ...+..+. ...+
T Consensus 122 ~~~ei~~-~~~~~L~~~l~d~s~~~------~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 122 DSEEIFE-ELKPVLKRILTDSSASP------KARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAP 192 (309)
T ss_pred cHHHHHH-HHHHHHHHHHhCCccch------HHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcc
Confidence 3333333 36788888888775432 455556666666553 222111100 01122111 1111
Q ss_pred ----CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 218 ----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 218 ----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (399)
.+++.+...|+.+.+-|...-+...-.-.-...+|.|..+|++++.+||..|..+|+-|.
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 123678999988888888655543222222346999999999999999999999998875
No 153
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.90 E-value=0.013 Score=58.30 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=111.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (399)
..+|.+++.........+..-+.+|.+...+.|. +.+.. ...+|.|++.|+-+|..++..+..++.-+....+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 5678888888876777888888899988875444 33333 4578899999999999999999999988775433322
Q ss_pred HHHHHCCCcHHHHHhhcCCC---hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 285 KEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
..- -.-+++.++.+-.+++ ..+|..|..+|..+++.-|...-.-....++..|.+.|.++-.-||+.|+.+=.+..
T Consensus 945 t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 945 TEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred hHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 211 1235677777665544 478999999999999755655445555667889999999888889999988755443
No 154
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.89 E-value=0.004 Score=46.77 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=59.9
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (399)
.+..|+++|....+. .....+|.=|+.++...|..+..+...|+-..++.+|.++|++|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~-------~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDP-------TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHH-------HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCc-------ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 688899999665543 677789999999999999999888788999999999999999999999999987764
No 155
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.13 Score=54.37 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=154.4
Q ss_pred hhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChh-HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (399)
Q Consensus 56 ~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~ 134 (399)
..+.+.++|.|-++- =|++..+|.....+...+..|+. ..+.. -..++.-|+.-|.+..- .+|+
T Consensus 993 ~p~l~kLIPrLyRY~--yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y-~neIl~eLL~~lt~kew------------RVRe 1057 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRYQ--YDPDKKVQDAMTSIWNALITDSKKVVDEY-LNEILDELLVNLTSKEW------------RVRE 1057 (1702)
T ss_pred hhHHHHhhHHHhhhc--cCCcHHHHHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhccchhH------------HHHH
Confidence 345666777777764 35677788877777777888743 33333 23445555555555444 7889
Q ss_pred HHHHHHHHhcCChhhHHHHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc----CchhHHHHHhcCCh
Q 015851 135 GSAFALGLLAVKPEHQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE----NSSIKTRVRMEGGI 209 (399)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i 209 (399)
.++.+|..|-+.++.-+..-. ...-..+++.+++-.+... +.-..++.+|+.+|.. ....+..-....++
T Consensus 1058 asclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR-----~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1058 ASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVR-----EAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 999999999965544332211 1133444444444333111 3445566777777731 11111111223445
Q ss_pred HHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH-HHHHHHHHhh----------
Q 015851 210 PPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY-EAVGVIGNLV---------- 277 (399)
Q Consensus 210 ~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~-~a~~~L~~l~---------- 277 (399)
|.|+.- +-+.-+++|+.++.++..|+.+..... .-.-...+|.|+...+.-++.+.. .++++ .|+.
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s 1210 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRAS 1210 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhchhhh-cchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHh
Confidence 665542 125568999999999999997433311 111134577777777665544332 23333 2221
Q ss_pred --cCChhH--HHHHH-------HCCCcHHHHHhhcCC-ChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCC
Q 015851 278 --HSSPNI--KKEVL-------AAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS 344 (399)
Q Consensus 278 --~~~~~~--~~~~~-------~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~ 344 (399)
.++|-- ....+ -...+|.+.++++++ ....+..++..+.-++..-. +.... ....+..++..+++
T Consensus 1211 ~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKD 1288 (1702)
T ss_pred hhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhcccc
Confidence 111110 00000 113455555555432 22344445555555543211 11111 11235566666778
Q ss_pred CCHHHHHHHHHHHHHhhccCCCC
Q 015851 345 PDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.++.+++.-..+.+.++..+.+.
T Consensus 1289 RNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred ccHHHHHHHHHHHHHHHhcCChH
Confidence 89999999999999999877653
No 156
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.86 E-value=0.041 Score=47.62 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll 258 (399)
.....++.+|.-++.-++..+..+.....+..++.+|.. ..+.++..++.+|..+...++.+...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 456668899999999999999999999999999999954 5689999999999999998999999999999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHhh
Q 015851 259 RSE--DSAIHYEAVGVIGNLV 277 (399)
Q Consensus 259 ~~~--~~~v~~~a~~~L~~l~ 277 (399)
++. +.+++..++..|.-..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 864 6688888887776654
No 157
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.84 E-value=0.063 Score=44.37 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC-
Q 015851 130 HEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG- 207 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~- 207 (399)
|.+|.+++.+++-|+ ..|...+. .++.+...|.+++. .+++.++.+|.+|...+. +.-.|
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~--------~VR~~al~~Ls~Li~~d~-----ik~k~~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDP--------LVRKTALLVLSHLILEDM-----IKVKGQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHcCc-----eeehhh
Confidence 589999999999999 66655443 57888999998876 899999999999996432 22223
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (399)
.+..++.++.+++++++..|..++..+...
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 347788889999999999999999999973
No 158
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.84 E-value=0.23 Score=47.19 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhh--------HHHHHhc---
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN--------KNQIVEC--- 248 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--------~~~~~~~--- 248 (399)
...+...|+..-+....... ....+..++.++.+ +++...+++++.-|..+.++. .+.+.+.
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~-----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPL-----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred HHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 34444556555555333221 12335667888777 777888899999888742332 1222222
Q ss_pred -CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHH
Q 015851 249 -NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (399)
Q Consensus 249 -~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 327 (399)
..+|.|+...+..+.+.+..-+.+|.++..+-|.....---...+|.+++.|+.++..++..+..+|..+....++...
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 2567777777776767888899999999877665433333346789999999999999999999999999876544433
Q ss_pred HHHhcCCHHHHHH
Q 015851 328 HIVQRGAVRPLIE 340 (399)
Q Consensus 328 ~l~~~g~v~~L~~ 340 (399)
.-.+ .+++.|++
T Consensus 402 ~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 402 EHLS-SLIPRLLK 413 (415)
T ss_pred HHHH-HHHHHHHh
Confidence 3222 34555554
No 159
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=96.84 E-value=0.069 Score=48.59 Aligned_cols=285 Identities=13% Similarity=0.137 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHh
Q 015851 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD 155 (399)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~ 155 (399)
...|...+.++..++++...-.-+...-.+..|+.+-.-+... .+.+...+..+...+.++|.|+. .++..++.+.+
T Consensus 60 ~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e--~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~ 137 (532)
T KOG4464|consen 60 LTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNE--NSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLE 137 (532)
T ss_pred chhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhcccc--CCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 4567788888888888755544443333445555443321110 01122334478889999999999 88899999999
Q ss_pred cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHH-HHhcCChHHHHHhhcCC---------------
Q 015851 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR-VRMEGGIPPLVELLEFT--------------- 219 (399)
Q Consensus 156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~ll~~~--------------- 219 (399)
......+++.+....+..-.. ++...-+..|.-+..-....+.. +...+|++.+...+.+.
T Consensus 138 ~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pq 214 (532)
T KOG4464|consen 138 NPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQ 214 (532)
T ss_pred hhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHH
Confidence 888888888876543311000 34444455555555434444444 45568999998888542
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHH--HHHhcCCH----HHHHHhhc--CCCHHHHHHHHHHHHHh--------hc--CCh
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKN--QIVECNAL----PTLILMLR--SEDSAIHYEAVGVIGNL--------VH--SSP 281 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~~----~~L~~ll~--~~~~~v~~~a~~~L~~l--------~~--~~~ 281 (399)
.......++.++.|++.+...... .-.....+ ..++..+. ....++..++...|.|. +. ..+
T Consensus 215 e~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~~~~~p~E 294 (532)
T KOG4464|consen 215 ETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVLAGAKPHE 294 (532)
T ss_pred HHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcccCCCCcc
Confidence 124567788888898874332211 11111111 22222221 12233443333333322 11 011
Q ss_pred hHHHHH--HHCCCcHHHHHhhcCCC---------hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH----------
Q 015851 282 NIKKEV--LAAGALQPVIGLLSSCC---------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE---------- 340 (399)
Q Consensus 282 ~~~~~~--~~~~~l~~L~~lL~~~~---------~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~---------- 340 (399)
...+.+ .....+..+..+|.... .+...-...+|..++.. ....+.+....++|+|..
T Consensus 295 ~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~-~R~~Rkylr~qVLPPLrDV~~RPEvg~t 373 (532)
T KOG4464|consen 295 CCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARS-HRVMRKYLRQQVLPPLRDVSQRPEVGQT 373 (532)
T ss_pred hHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhh-hHHHHHHHHHhcCCchhhhhcCcchhHH
Confidence 111212 22223445555554211 12333355677777753 555555655557766654
Q ss_pred -------hhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 341 -------MLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 341 -------ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
++..++..++..|+..|..||+.+-++
T Consensus 374 LRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~r 407 (532)
T KOG4464|consen 374 LRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVNR 407 (532)
T ss_pred HHHhhHhheeccchhhhhhhHHHHHHHhhcchhh
Confidence 444456677788888888888877764
No 160
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.012 Score=54.47 Aligned_cols=186 Identities=14% Similarity=0.099 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC----Chh--hHHHHHhcCCHHHH
Q 015851 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDE--NKNQIVECNALPTL 254 (399)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~----~~~--~~~~~~~~~~~~~L 254 (399)
+...+.+++.-+.-+.........-......++..+.+..-..|.++.++++||+.. .|. ....-...-.+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 334455555554433332222222334455566666777788999999999999852 121 11111111123333
Q ss_pred HHhhc---CCCHHHHHHHHHHHHHhhcCChh---HHHHHHHCCCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChh-hH
Q 015851 255 ILMLR---SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSD-CK 326 (399)
Q Consensus 255 ~~ll~---~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~-~~ 326 (399)
+.... -.+..|+.+|.++|+|+..--.. .....+..+.+..++.. .-.....++-+||.+++|+.....- ..
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 33222 24568999999999998642110 11111112222222222 2234568999999999999854211 11
Q ss_pred HHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851 327 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 327 ~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
..=+...+++.|+.++. ..+-+||..|+.+|..-+...+.
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~ 607 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQY 607 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccc
Confidence 12223456788888885 57899999999999887765553
No 161
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.82 E-value=0.019 Score=47.75 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHC----------------CCcHHHHHhhcC------CChHHHHHHHHHHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------------GALQPVIGLLSS------CCSESQREAALLLGQ 317 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------------~~l~~L~~lL~~------~~~~v~~~a~~~L~~ 317 (399)
+++......++..|+|++.. +.....+++. ..+..|+.++.. ....-....+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 44556777889999999975 4444434322 246677777654 233556778899999
Q ss_pred hhccChhhHHHHHhc--CC--HHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 318 FAATDSDCKVHIVQR--GA--VRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 318 l~~~~~~~~~~l~~~--g~--v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++. -+++|+.+.+. +. +..|+.++.+.+..-|..++.+|+|+|.+...
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~ 136 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS 136 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence 986 58999999873 34 67888888888777788888999999988775
No 162
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.044 Score=54.38 Aligned_cols=213 Identities=17% Similarity=0.144 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
.+|-.++..|.++....+....+...+.+...+..|++.+. -+--.+...+..||.. .....+|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcev--------y~e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEV--------YPEDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHh--------cchhhHH
Confidence 46778888899988655666777778888999999988766 4556677777788843 3345677
Q ss_pred HHHHh-hcCCC---HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 211 PLVEL-LEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 211 ~L~~l-l~~~~---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
.+.+. .+..+ ++.+-.+-.++.++...-.+......+ ..+..+++..++++...|..++..+++++.-.......
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 77763 33221 355555567777777643333333333 35666777778888899999999999998532211111
Q ss_pred HHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHH---hcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 015851 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~---~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~ 361 (399)
.-+..+..++.+.. ++++.+|+.|+-.+..+..+-....-.+. ..+....+...+.. .+..++..|..++-.+-
T Consensus 885 -~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 885 -FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred -HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 11234455555555 45668999999999988754322222221 22345556666643 45556677776665543
No 163
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.049 Score=54.12 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=136.5
Q ss_pred HHhhhhhc-chhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 015851 64 NVLNTTFS-WLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (399)
Q Consensus 64 ~~L~~~l~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~ 142 (399)
+.+.+++. ..++.+.+|-+++..|..+.+..+....+...+++...+..|.+.++ -+--.|...+..
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds------------yvyLnaI~gv~~ 794 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS------------YVYLNAIRGVVS 794 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc------------eeeHHHHHHHHH
Confidence 33555443 34555668999999999999866666677788999999999999887 456688888888
Q ss_pred hc-CChhhHHHHHhcCcHHHHHH-HHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851 143 LA-VKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (399)
Q Consensus 143 l~-~~~~~~~~i~~~~~i~~L~~-~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (399)
|| ..| ...++.+.. +.+....... +.+..+-.++.++.+.--+.-.... ...+..++...++++
T Consensus 795 Lcevy~--------e~il~dL~e~Y~s~k~k~~~-----d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 795 LCEVYP--------EDILPDLSEEYLSEKKKLQT-----DYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPD 860 (982)
T ss_pred HHHhcc--------hhhHHHHHHHHHhcccCCCc-----cceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCch
Confidence 88 333 346777777 3433322211 2222333455555532211111111 134566777778888
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH---HCCCcHHH
Q 015851 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL---AAGALQPV 296 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L 296 (399)
...|..++..+++++....-...... ...+..++.+.. ++..-+|+.|+..+..+-.+...-.-.+. ..+....+
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl 939 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETL 939 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 88899999999999973221111111 123444555554 45678999999999988765332222222 12333344
Q ss_pred HHhhcC-CChHHHHHHHHHHHHh
Q 015851 297 IGLLSS-CCSESQREAALLLGQF 318 (399)
Q Consensus 297 ~~lL~~-~~~~v~~~a~~~L~~l 318 (399)
.++... ++..++..|+.++-.+
T Consensus 940 ~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 940 LSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHhcCchhHHHHHHHHHHHHH
Confidence 444443 3445666666655544
No 164
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.69 E-value=0.0028 Score=35.38 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=26.3
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 334 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
++|.+++++++++++||.+|+.+|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999864
No 165
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.044 Score=56.23 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=120.4
Q ss_pred cCChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 015851 206 EGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSS 280 (399)
Q Consensus 206 ~~~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~ 280 (399)
..+.|.+++.+++ .+|+++.+|.-+|+.+..-+. .+++. .+|.|+..+. ++++-+|.++.-+++.++...
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces-~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHH-HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 3466888888844 579999999999998875332 33332 5788999887 789999999999999999765
Q ss_pred hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851 281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (399)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 360 (399)
+.... ..-+.|...|...++.+|+.|..+|++|... ..+.-.|.++.+..++.+++++++..|-.....|
T Consensus 993 pnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 55432 2456788889999999999999999999854 2445578899999999999999999999888888
Q ss_pred hccCCC--CcchhHHHHH
Q 015851 361 AQVITV--SVLPAILIFI 376 (399)
Q Consensus 361 ~~~~~~--~~~~~~~~~~ 376 (399)
+..++. ..+|-++.-+
T Consensus 1063 s~k~n~iynlLPdil~~L 1080 (1251)
T KOG0414|consen 1063 SSKGNTIYNLLPDILSRL 1080 (1251)
T ss_pred hhcccchhhhchHHHHhh
Confidence 877743 1445544333
No 166
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.64 E-value=0.17 Score=50.81 Aligned_cols=220 Identities=15% Similarity=0.079 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
.+.-.+.+++...+ ..+.+...+.. ++...+..+...... -++..++.+++..+.... .. -...+++
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~-------~~ki~a~~~~~~~~~~~v-l~--~~~p~il 532 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPP-------PVKISAVRAFCGYCKVKV-LL--SLQPMIL 532 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCC-------chhHHHHHHHHhccCcee-cc--ccchHHH
Confidence 45557778887766 33333332221 344455555544433 566667777777772221 11 1234667
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (399)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (399)
..|+.+....+.++......+|...+..+++. ....+..+.|.++.++. +++|.+...+-.++-.++.. .....-
T Consensus 533 d~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~ 609 (1005)
T KOG2274|consen 533 DGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI--AANYGP 609 (1005)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcc
Confidence 77888888888899999999999999855444 44555667887777654 46777777777777666531 112223
Q ss_pred HHCCCcHHHHHhhcCCC----hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhc
Q 015851 288 LAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 288 ~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 362 (399)
.....+|.+++.|..+. .....-|+..|.-+....+.-.....-.-++|++.++. +++|.++-+++..||+.+..
T Consensus 610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 33457999999998665 45566677777777765443333333334578888876 67889999999999999887
Q ss_pred cCC
Q 015851 363 VIT 365 (399)
Q Consensus 363 ~~~ 365 (399)
.+.
T Consensus 690 ~~~ 692 (1005)
T KOG2274|consen 690 VTL 692 (1005)
T ss_pred cCH
Confidence 754
No 167
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.2 Score=49.53 Aligned_cols=266 Identities=18% Similarity=0.206 Sum_probs=139.6
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
..+.+++.+++..+ ...+..+|+..+.++... +..... .+..|--+++++.. .+|-.|.+
T Consensus 244 s~~~~fl~s~l~~K--~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~------------~lRfaAvR 304 (865)
T KOG1078|consen 244 SPLFPFLESCLRHK--SEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKV------------ALRFAAVR 304 (865)
T ss_pred hhHHHHHHHHHhch--hHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHH------------HHHHHHHH
Confidence 34566777777543 445677888888888762 221111 45555566666655 78899999
Q ss_pred HHHHhc-CChhh--------HHHHHhcC---cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-----hhHH
Q 015851 139 ALGLLA-VKPEH--------QQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKT 201 (399)
Q Consensus 139 ~L~~l~-~~~~~--------~~~i~~~~---~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-----~~~~ 201 (399)
+|..++ ..|.. -..+.+.+ ....+..+|+...+.... .+........++++.... ..+.
T Consensus 305 tLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~----rLm~qI~~fv~disDeFKivvvdai~s 380 (865)
T KOG1078|consen 305 TLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVD----RLMKQISSFVSDISDEFKIVVVDAIRS 380 (865)
T ss_pred HHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHH----HHHHHHHHHHHhccccceEEeHHHHHH
Confidence 999998 54432 12222221 334445555554432211 333334444444442111 0000
Q ss_pred H-----HHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851 202 R-----VRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 275 (399)
Q Consensus 202 ~-----~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~ 275 (399)
. ....+.++.|..+|..+ .-+.+.....++..+...+++.+..... .|...+.+ -+...-+.+.|+-
T Consensus 381 Lc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~-----~LCefIED--ce~~~i~~rILhl 453 (865)
T KOG1078|consen 381 LCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLE-----HLCEFIED--CEFTQIAVRILHL 453 (865)
T ss_pred HHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHH-----HHHHHHHh--ccchHHHHHHHHH
Confidence 0 01123344455555442 2455555555665555544444432222 22222222 2334444555555
Q ss_pred hhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHH
Q 015851 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 355 (399)
Q Consensus 276 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~ 355 (399)
+....+.. ..-...+..+...+.-.+..+|..|..+|.++...++..+ ..+...|..++.+.+.++|..|..
T Consensus 454 LG~EgP~a---~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 454 LGKEGPKA---PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred HhccCCCC---CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHH
Confidence 54322111 1111234444444444566889999999999975443332 234456777888899999999999
Q ss_pred HHHHhhcc
Q 015851 356 ALGRLAQV 363 (399)
Q Consensus 356 ~L~~l~~~ 363 (399)
.|.++-..
T Consensus 526 ~l~~l~~~ 533 (865)
T KOG1078|consen 526 YLKNLEEK 533 (865)
T ss_pred HHHHhhhh
Confidence 99988833
No 168
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.89 Score=43.63 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhc-CC--hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851 131 EVEKGSAFALGLLA-VK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~--~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (399)
.+...+++++..++ .+ ++.-+. .+..|-.+|++... ..+-.|+++|..|+...|..- .-
T Consensus 279 mV~lE~Ar~v~~~~~~nv~~~~~~~-----~vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~v 340 (898)
T COG5240 279 MVFLEAARAVCALSEENVGSQFVDQ-----TVSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SV 340 (898)
T ss_pred hhhHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----ee
Confidence 56667777777766 32 211111 35555556665554 667778888888886554311 11
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (399)
+=+-+-.++.+.+..+...|...|..-- .++....++.. ++.+++=++++-.-+...|++.|++.
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~ 405 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKTG--TEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLL 405 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhh
Confidence 1123344455555555555555544332 34444444432 44444444444334444455554444
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.43 E-value=0.03 Score=55.95 Aligned_cols=151 Identities=14% Similarity=0.169 Sum_probs=108.3
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (399)
.++|.+++....... ..+..-+.+|.+...+-|. +.+. -...+|.|++.|.-+|..++..++.++.-+
T Consensus 867 ~ivP~l~~~~~t~~~--------~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPG--------SQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPML 936 (1030)
T ss_pred hhHHHHHHHhccCCc--------cchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHH
Confidence 478888888874333 4556677778887765554 2122 235678899999999999999999999888
Q ss_pred hcCChhhHHHHHhcCCHHHHHHhhcCCC---HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851 235 AFKNDENKNQIVECNALPTLILMLRSED---SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (399)
....+.....-++. .+|.++.+=.+++ ..+|..|+.+|..|+..-|...-......++..+++.|.++..-+|++|
T Consensus 937 l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 937 LTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred HHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 86544444444443 6777777766554 5799999999999997445444444556688999999998888999998
Q ss_pred HHHHHHh
Q 015851 312 ALLLGQF 318 (399)
Q Consensus 312 ~~~L~~l 318 (399)
+.+=.+.
T Consensus 1016 v~tR~~W 1022 (1030)
T KOG1967|consen 1016 VDTRQNW 1022 (1030)
T ss_pred HHHhhhh
Confidence 8765443
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.38 E-value=0.25 Score=44.61 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-hhHHH------
Q 015851 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTR------ 202 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~------ 202 (399)
.+|..++.+|+-.+ -+.+.... .++.+.+.++..++ +++..++.++..+..... ..-..
T Consensus 42 ~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~--------~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDE--------EVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 89999999999999 55544332 46777788865533 899999999998885322 11111
Q ss_pred -HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh-hc---CCCHHHHHHHHHHHHHhh
Q 015851 203 -VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LR---SEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 203 -~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l-l~---~~~~~v~~~a~~~L~~l~ 277 (399)
......+..+...+.+.+++++..|+..++.|.....-.- ...++..|+-+ ++ .++..++..-...+-..+
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA 184 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 1123456788888999999999999999999886322111 12233333332 22 245678888888888888
Q ss_pred cCChhHHHHHHHCCCcHHHHHhhcCC
Q 015851 278 HSSPNIKKEVLAAGALQPVIGLLSSC 303 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (399)
..++.+ +..+...+++.+..+...+
T Consensus 185 ~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 185 SSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 765555 5666677778777777643
No 171
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.37 E-value=0.055 Score=43.65 Aligned_cols=132 Identities=21% Similarity=0.187 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH-hcCCh
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGI 209 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i 209 (399)
++|..+.-++..+- +..++.+.+ -+-+.+-..+..... +-...+..++..+....+.....+. ..|++
T Consensus 20 ~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~--------d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 20 EVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEM--------DSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp CHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHC--------CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred hHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccc--------hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 68889999998884 333333322 122333333333333 3345678888888877776655554 45778
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 015851 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSA-IHYEAVGVIGN 275 (399)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~-v~~~a~~~L~~ 275 (399)
+.++.++. ..+..++..++.+|..-+. ++.+..++...+++.|-...+ ++++. ++..|+-.|..
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 89 ESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 88999988 7789999999999998886 455566666668999999995 45565 78888777754
No 172
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.34 E-value=0.57 Score=43.70 Aligned_cols=142 Identities=13% Similarity=0.202 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhhc---CChhhHHHHHh-cCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 224 QRAAAGALRTLAF---KNDENKNQIVE-CNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 224 ~~~a~~~L~~L~~---~~~~~~~~~~~-~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
.+..++++..+.. +..+....+.+ ...+..|..++++. -+.+...|+.++..+....|.....+.+.|+++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 3444455555554 22233334555 44556677777764 36889999999999998888888888899999999
Q ss_pred HHhhc-C---CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH-------HHHHHHHHHHHHhhccCC
Q 015851 297 IGLLS-S---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-------QLREMSAFALGRLAQVIT 365 (399)
Q Consensus 297 ~~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~-------~v~~~a~~~L~~l~~~~~ 365 (399)
++.+. . ++.++....-.+++.+|- +..+.+.+.+.+.++.+.+++.+++. +........+-.|.++.|
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p 235 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP 235 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH
Confidence 99987 3 344666666678888885 68999999999999999999976432 333444456666777776
Q ss_pred C
Q 015851 366 V 366 (399)
Q Consensus 366 ~ 366 (399)
.
T Consensus 236 ~ 236 (379)
T PF06025_consen 236 S 236 (379)
T ss_pred H
Confidence 3
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.34 E-value=0.12 Score=46.67 Aligned_cols=144 Identities=20% Similarity=0.190 Sum_probs=102.4
Q ss_pred CHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHH
Q 015851 250 ALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKV 327 (399)
Q Consensus 250 ~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~ 327 (399)
.+..|+ ..++++++.+|..|+.+||-.+.-+..... ..++.+...++.++..++..|+.++..+.... .....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344343 667888999999999999999865543322 23667777787778899999999999887532 22211
Q ss_pred H-------HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC----cchhHHHHHhhccc-cHHHHHHHHhhhHh
Q 015851 328 H-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS----VLPAILIFIIINEC-QLEVLAFVLSEMVL 395 (399)
Q Consensus 328 ~-------l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 395 (399)
. .....+++.+.+.+.+.+++++..|+..++.|--.+.-. ++..++..+..+.. ...-+.++++.|.-
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 1 122456788888888889999999999999987665533 34444444444444 44789999999988
Q ss_pred hhc
Q 015851 396 LFC 398 (399)
Q Consensus 396 ~~~ 398 (399)
+||
T Consensus 182 ~y~ 184 (298)
T PF12719_consen 182 VYA 184 (298)
T ss_pred HHH
Confidence 887
No 174
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.19 Score=51.91 Aligned_cols=225 Identities=16% Similarity=0.145 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHh--CCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhH
Q 015851 75 ADRAAAKRATHVLAELAKNEEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQ 150 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~ 150 (399)
.+..+|.++.+.|..++..+.......+ ..+...|..-+++... ..+...+.+|..+- .+.+..
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~------------~~~~~rl~~L~~L~~~~~~e~~ 733 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS------------PAQASRLKCLKRLLKLLSAEHC 733 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch------------HHHHHHHHHHHHHHHhccHHHH
Confidence 3567899999999999887433322221 1334444444444333 56777778888877 223444
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-----cCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQR 225 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 225 (399)
..+.. .|+.++-.++..+. ..++.+..+|.+++. ...+-+....-..+++.+..-+-.+......
T Consensus 734 ~~i~k--~I~EvIL~~Ke~n~--------~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~a 803 (1176)
T KOG1248|consen 734 DLIPK--LIPEVILSLKEVNV--------KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVA 803 (1176)
T ss_pred HHHHH--HHHHHHHhcccccH--------HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHH
Confidence 44433 34554444444444 677778888877772 0000000001112233333332232232222
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh
Q 015851 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS 305 (399)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 305 (399)
..+-++..+............-.+.+..+...|.++.++++..|++.+..++...+...-......+++.+..+++....
T Consensus 804 s~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~ 883 (1176)
T KOG1248|consen 804 SDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKI 883 (1176)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhH
Confidence 22444444443222211111112345555566778999999999999999997766654444444578888888887777
Q ss_pred HHHHHHHHHHHHhhcc
Q 015851 306 ESQREAALLLGQFAAT 321 (399)
Q Consensus 306 ~v~~~a~~~L~~l~~~ 321 (399)
.++...-..|-.|...
T Consensus 884 ~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 884 KVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877777777654
No 175
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.33 E-value=0.075 Score=46.05 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
.....|+.+|.-++ -+|..+..+.+...+..++.+|...... .++..++.+|..+..+++.+...+...+|+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~-------~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl 178 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPP-------AIQSACLDTLVCILLDSPENQRDFEELNGL 178 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCc-------hHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Confidence 45667889999999 9999999999999999999999554433 888999999999998999888889999999
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHhhc
Q 015851 210 PPLVELLEFTD--TKVQRAAAGALRTLAF 236 (399)
Q Consensus 210 ~~L~~ll~~~~--~~v~~~a~~~L~~L~~ 236 (399)
..++.++++.. .+++-.....|.-...
T Consensus 179 ~~v~~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 179 STVCSLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHHHHccccccHHHhHHHHHHHHHHHc
Confidence 99999998764 6788888888876665
No 176
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.088 Score=51.98 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=113.7
Q ss_pred HHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-cCChHH
Q 015851 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPP 211 (399)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~ 211 (399)
..++.++.||+ .+...++.+...-+++.+-.++...+. .++..++..+.||..+..-....+.+ ....+.
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~--------~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~ 631 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENP--------ALQRAALESIINLLWSPLLYERSIVEYKDRLKL 631 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccH--------HHHHHHHHHHHHHHhhHHHHHHHhhccccCchH
Confidence 46788999999 777778778877777776666665555 78899999999999654444444444 356777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (399)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (399)
...++...++....++++++..++.-....+..+.+ ......++.++.+.+.+++...+..+.|+.....+....+...
T Consensus 632 w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~ 711 (748)
T KOG4151|consen 632 WNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFET 711 (748)
T ss_pred HHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccc
Confidence 777777777888889999998777744444543333 5677889999999999999999999999765444444455555
Q ss_pred CCcHHHHHh
Q 015851 291 GALQPVIGL 299 (399)
Q Consensus 291 ~~l~~L~~l 299 (399)
..+..+..+
T Consensus 712 ~~~~~l~~~ 720 (748)
T KOG4151|consen 712 EVMELLSGL 720 (748)
T ss_pred hHHHHHHHH
Confidence 555444443
No 177
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.30 E-value=0.046 Score=45.44 Aligned_cols=124 Identities=14% Similarity=0.094 Sum_probs=85.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc----------------CCHHHHHHhhcC------CCHHHHHHHHHHHH
Q 015851 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVEC----------------NALPTLILMLRS------EDSAIHYEAVGVIG 274 (399)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----------------~~~~~L~~ll~~------~~~~v~~~a~~~L~ 274 (399)
.+++......++..|.||+. .+.++..+.+. ..+..|+..+.. +...-..+.+.++.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTR-SDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhcc-chHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 34455567778889999997 56666655442 245566666654 33456778899999
Q ss_pred HhhcCChhHHHHHHHCC--C--cHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh---cCCHHHHHHhhC
Q 015851 275 NLVHSSPNIKKEVLAAG--A--LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQ 343 (399)
Q Consensus 275 ~l~~~~~~~~~~~~~~~--~--l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~g~v~~L~~ll~ 343 (399)
|++.. +..+..+.+.. . +..|+.++.+.+..-|.-++.+|.|+|-. .+.-..+.. .+++|.|+--+.
T Consensus 84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd-~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD-TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-HhHHHHhcCchhhhhHHHHHhhcc
Confidence 99965 78888887543 3 77888888888766677788999999965 444444544 356666666554
No 178
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.28 E-value=0.4 Score=44.69 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHH-HhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh
Q 015851 180 SVIRRAADAITN-LAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (399)
Q Consensus 180 ~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l 257 (399)
+-+..++.-|.. ++.+.-...+... ...+..+++.|.+ .++.++..|++.|..++...+.....-.+. ++..++..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~-ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI-AICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH-HHHHHHHH
Confidence 344455553433 4433333333222 2234567777877 678899999999999998544322222221 34445555
Q ss_pred hcCCCHHHHHHHHHH-HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh--cCC
Q 015851 258 LRSEDSAIHYEAVGV-IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGA 334 (399)
Q Consensus 258 l~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~g~ 334 (399)
-.+.++++...|... +..++...+... +..+..++.+.+...-..++..+..+... -..+.+.. ..+
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~--l~~EeL~~ll~di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFER--LSAEELLNLLPDI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhh--cCHHHHHHhhhhh
Confidence 555666666555554 444444444331 33344445455555555666677777743 23333333 578
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 335 VRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 335 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
.|.+++--.+.+..||+.|+.+|..+...-+
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 8999999999999999999999999887666
No 179
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.22 E-value=0.0076 Score=33.61 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
+|.+++++++++++||..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999974
No 180
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.18 E-value=0.042 Score=44.33 Aligned_cols=145 Identities=22% Similarity=0.289 Sum_probs=94.4
Q ss_pred hHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 209 IPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 209 i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
+..++..|. ...+++|..++-++..+. +..++.+.+. +-+.+-..+...+.+-...+..++..+--..++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 444555544 355778888888888774 3333333321 2233444455444456667888888887666665555
Q ss_pred HH-HCCCcHHHHHhhc--CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHH-HHHHHHHHHHH
Q 015851 287 VL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQ-LREMSAFALGR 359 (399)
Q Consensus 287 ~~-~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~-v~~~a~~~L~~ 359 (399)
++ ..|+++.++.++. +.+..++..++.+|..-|. +..++ ..+...+++.|.++.+ +++.. ++..|+-+|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 54 6788899999998 7788889999998888763 44454 4445557899999995 55566 77777776654
No 181
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.54 Score=46.34 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=75.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChhhHHH
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVH 328 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 328 (399)
+=+.+-.++.+.++-+|.....+++---.+... .+++..|++. .+..+.+|++.|..+|+-++..+++.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--- 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--- 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence 344555677778888887776665532222222 3467777777 66788899999999999998877766
Q ss_pred HHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 329 IVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 329 l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
++..+.+| .+-++.||..++-+|+-.|..+.++
T Consensus 590 ------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 590 ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred ------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 44555666 4679999999999999999988875
No 182
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.05 E-value=0.04 Score=37.63 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 015851 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (399)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~ 158 (399)
...|+|+++++++.+.....+-+.++++.++++..+.+.- .+|--|..+|+-++.+.+..+.+.+.|-
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-----------siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-----------SIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-----------chHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 4579999999999988888888889999999999876553 6888999999999999999888777663
No 183
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=1.2 Score=45.80 Aligned_cols=243 Identities=20% Similarity=0.226 Sum_probs=134.4
Q ss_pred CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (399)
Q Consensus 104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~ 182 (399)
+++..|++-+++.+. .+|=-|++.++.++ ..| ... + ...+...+.++.-.+++ ...
T Consensus 341 ~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp--~~L-a-d~vi~svid~~~p~e~~-------~aW 397 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLP--PEL-A-DQVIGSVIDLFNPAEDD-------SAW 397 (1133)
T ss_pred HHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCc--HHH-H-HHHHHHHHHhcCcCCch-------hHH
Confidence 556777777777776 56668999999999 555 111 1 12566666655544433 667
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--------CHHHHHHHHHHHHHhhcCChhh-HHHHHhcCCHHH
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--------DTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPT 253 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~~ 253 (399)
.-+|-+|+.|+...--....+ ..++|.++.-|.-+ ...||..|+.++|.++..+... .+.+.+.=+-..
T Consensus 398 HgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L 475 (1133)
T KOG1943|consen 398 HGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL 475 (1133)
T ss_pred HHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH
Confidence 788999999985332111111 24566666655432 3568999999999999754332 222333211223
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 015851 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (399)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 333 (399)
|...+-+++-..|+.|..++........+. ..+++ ++...+.-+...+.++-..|..-.+..+..+..+++.
T Consensus 476 L~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~- 547 (1133)
T KOG1943|consen 476 LIVALFDREVNCRRAASAALQENVGRQGNF------PHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH- 547 (1133)
T ss_pred HHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-
Confidence 344556777889999988887665211110 00111 1111221122233333333333222223333333222
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC----CcchhHHHHHhhcccc
Q 015851 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITV----SVLPAILIFIIINECQ 382 (399)
Q Consensus 334 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~~~~ 382 (399)
.+.+-+.+=+..+++-++++|.+|+...+. ..+|+++......+..
T Consensus 548 ---L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 548 ---LLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred ---HHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChH
Confidence 111113345889999999999999987775 3567766665555443
No 184
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=0.1 Score=53.81 Aligned_cols=162 Identities=21% Similarity=0.259 Sum_probs=120.2
Q ss_pred hhhHHHHhhhhhcc--hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccC-CCCcccccCCCcchHHHHH
Q 015851 59 VSAQVNVLNTTFSW--LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQA-PPTSEADRNLKPFEHEVEK 134 (399)
Q Consensus 59 ~~~~~~~L~~~l~~--~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~-~~~~~~~~~~~~~~~~~~~ 134 (399)
..++.|++...++. -..++++|..|.-+|+.++. +.+.+..- +|.|+..+.. +.+ -+|.
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p------------~IRs 979 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSP------------RIRS 979 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCc------------eeee
Confidence 45677777777752 23568899999999999988 56665543 7888888884 444 6777
Q ss_pred HHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (399)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (399)
+++-+++-++ ..|..-+. ..+.|...|.+.+. .+++.+.-+|.+|...+ ++.-.|.++.+.
T Consensus 980 N~VvalgDlav~fpnlie~-----~T~~Ly~rL~D~~~--------~vRkta~lvlshLILnd-----miKVKGql~eMA 1041 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLIEP-----WTEHLYRRLRDESP--------SVRKTALLVLSHLILND-----MIKVKGQLSEMA 1041 (1251)
T ss_pred cchheccchhhhcccccch-----hhHHHHHHhcCccH--------HHHHHHHHHHHHHHHhh-----hhHhcccHHHHH
Confidence 9999999999 66655443 45677777877776 89999999999999532 566689999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (399)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (399)
.++.++++.++..|=..+..|+..... + .+.+|-++.-|.++
T Consensus 1042 ~cl~D~~~~IsdlAk~FF~Els~k~n~----i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKGNT----I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhcccc----h--hhhchHHHHhhccC
Confidence 999999999999999888888863211 1 12455555555543
No 185
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=0.8 Score=46.14 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=81.2
Q ss_pred HHHHHhcCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCChhHHHHHHHC--------CCcHHHHHhhc----
Q 015851 242 KNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--------GALQPVIGLLS---- 301 (399)
Q Consensus 242 ~~~~~~~~~~~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~~l~~L~~lL~---- 301 (399)
.+.+.+.+++..++.+..- +..++...|+.+|+-+.. -|..+..+..+ .++..++..-.
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 3445666667777776653 224677778888876654 35555555422 13443433322
Q ss_pred CCChHHHHHHHHHHHHhhccChhhHHH-----------------------------------HHhcCCHHHHHHhhCC--
Q 015851 302 SCCSESQREAALLLGQFAATDSDCKVH-----------------------------------IVQRGAVRPLIEMLQS-- 344 (399)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~~~~~~~~~-----------------------------------l~~~g~v~~L~~ll~~-- 344 (399)
-.+++++..|+.+|.|+....|+++.. +...++|..|+++++.
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 237899999999999998654333221 2336789999999974
Q ss_pred ---CCHHHHHHHHHHHHHhhccCCC
Q 015851 345 ---PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 345 ---~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.-..+|..|+.+|.-|++++.-
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHH
Confidence 2356899999999999998874
No 186
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.92 E-value=0.59 Score=44.45 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=81.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--------HHHHHHCC----CcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--------KKEVLAAG----ALQPVIGLLSSCCSESQREAALLLGQ 317 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~----~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (399)
.+..|+.++.+ +++...++.+++-+....+.. .+.+.... .+|.+++..+..+...+.+-..+|++
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 35557777766 778888999998887542222 22333333 46666666666666688888889999
Q ss_pred hhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 318 l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+...-|...-.-.-..++|.|++-+..++.+++..+..+|..+..+.+.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 9876553322222245789999999999999999999999999988864
No 187
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.83 E-value=0.19 Score=47.59 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015851 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 155 (399)
+...+..|+..|..++.++.....++...++..|.+++.+....... ++...++.++..+-...-..-..+.
T Consensus 96 ~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~--------~~L~~~L~af~elmehgvvsW~~~~ 167 (713)
T KOG2999|consen 96 NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS--------ELLSTSLRAFSELMEHGVVSWESVS 167 (713)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH--------HHHHHHHHHHHHHHhhceeeeeecc
Confidence 44556679999999999999999999999999999999887652222 5666677777666521111111122
Q ss_pred cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (399)
Q Consensus 156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (399)
..+|.....+.+....+. .+...++..|-++...++.....+...--+..++..+...+..++..|...+..+.
T Consensus 168 ~~fV~~~a~~V~~~~~~a------~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 168 NDFVVSMASYVNAKREDA------NTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred cHHHHHHHHHHhhhhhcc------cchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 234555555553322221 67788999999999877777777777888999999999999999998888888777
Q ss_pred cCChh
Q 015851 236 FKNDE 240 (399)
Q Consensus 236 ~~~~~ 240 (399)
...++
T Consensus 242 ~~a~~ 246 (713)
T KOG2999|consen 242 RKAPD 246 (713)
T ss_pred hhCCh
Confidence 65444
No 188
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.53 E-value=0.21 Score=46.65 Aligned_cols=263 Identities=16% Similarity=0.185 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHHHcCChh-HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC------Chh
Q 015851 76 DRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV------KPE 148 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~------~~~ 148 (399)
...+|.+++.+|.-++.+.. .+..+.+. ...+..-+... .|+++.++..++..+.. .|+
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~~~------------~p~~~l~~a~ll~~lg~~lv~~~~P~ 333 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMGEA------------DPSIQLHGAKLLEELGTGLIQQYKPD 333 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCC------------ChHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 34578899999998887633 22222221 12222223333 34788889888887752 233
Q ss_pred hHHHHHhcCcHHHHHH------HHhccccCccccccHHHHHHHHHHHHHHhhcC----chhHHHHHhcCChHHHHHhhcC
Q 015851 149 HQQLIVDNGALSHLVN------LLKRHMDSNCSRAVNSVIRRAADAITNLAHEN----SSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 149 ~~~~i~~~~~i~~L~~------~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
..+.-...+.+-.++- ..-+.... ......|.++.++.... ++.+. ...+-.+..+-.+
T Consensus 334 ~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~-------Tl~~s~Cdals~i~~~~f~~lpn~~~----T~~~~Fl~GC~d~ 402 (728)
T KOG4535|consen 334 STKAPDQRAPFWTMMLNGPLPRALYDSEHP-------TLQASACDALSSILPEAFSNLPNDRQ----TLCITFLLGCNDS 402 (728)
T ss_pred cccchhhhccHHHHHccCCChhhhhhhcCC-------CchhHHHHHHhhcCchhhcCCCCcch----hhhHHHHhcccch
Confidence 2222222221211111 11111111 56677788888877321 11111 0111122222234
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHH-HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc----CChh---HHHHHHHC
Q 015851 219 TDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH----SSPN---IKKEVLAA 290 (399)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~---~~~~~~~~ 290 (399)
++.-++..|.+++..+.-+ +..+.. ..-......+...+.+..-..|..+.|+++||+. +.+. ....+. .
T Consensus 403 ~~~lv~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g 480 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-G 480 (728)
T ss_pred HHHHHHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-H
Confidence 4455778888888877774 333322 2223455556666667677899999999999973 1122 111221 1
Q ss_pred CCcHHHHHhhc---CCChHHHHHHHHHHHHhhccCh---h-hHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhc
Q 015851 291 GALQPVIGLLS---SCCSESQREAALLLGQFAATDS---D-CKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 291 ~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~---~-~~~~l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 362 (399)
-.+..++..-. ..+.+++.++..+|+|+...-. + ....+. .|.+..+.... ....-.|+=+|+.+++||-+
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 12333333322 2345889999999999874211 0 111222 22233333322 34577899999999999998
Q ss_pred cCCC
Q 015851 363 VITV 366 (399)
Q Consensus 363 ~~~~ 366 (399)
+..-
T Consensus 560 n~a~ 563 (728)
T KOG4535|consen 560 NPAL 563 (728)
T ss_pred Cccc
Confidence 8764
No 189
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=1.2 Score=42.02 Aligned_cols=134 Identities=18% Similarity=0.115 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 131 EVEKGSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~-~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
.+|..|++.|++.+.. |+-... ...-.+..++.-|.+.... +++..++.+|..+...-.. . -.....+
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~t-h~~~~ldaii~gL~D~~~~-------~V~leam~~Lt~v~~~~~~-~--~l~~~~l 341 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRT-HKTTQLDAIIRGLYDDLNE-------EVQLEAMKCLTMVLEKASN-D--DLESYLL 341 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHH-hHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHhhhh-c--chhhhch
Confidence 7899999999999954 432222 1222556666666665553 8888888888887742221 1 1122233
Q ss_pred ---HHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 210 ---PPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (399)
Q Consensus 210 ---~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (399)
-.+..+..+.+++.+..+...++.|+.... ..+..+.+ .+....++-.++++++.+.. ||+.....
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~ 413 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT 413 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh
Confidence 345667888999999999988888885322 22223332 22233455556666665544 44444333
No 190
>PRK14707 hypothetical protein; Provisional
Probab=95.39 E-value=5.6 Score=44.49 Aligned_cols=276 Identities=14% Similarity=0.095 Sum_probs=146.7
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCCh
Q 015851 68 TTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP 147 (399)
Q Consensus 68 ~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 147 (399)
+.++.+-++..++..|...-..++.+++.+..+- .-++...+.-++.-... +.++..+...=..+..++
T Consensus 338 NalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~----------~~c~~aa~~LA~~l~~d~ 406 (2710)
T PRK14707 338 NALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDT----------PVCAAAASALAEHVVDDL 406 (2710)
T ss_pred HHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCc----------hHHHHHHHHHHHHhccCh
Confidence 3344344555566666666666777888887664 34455556666654432 245544444445566888
Q ss_pred hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHH
Q 015851 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA 227 (399)
Q Consensus 148 ~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 227 (399)
+.+..+-.. .+..+++-|.+=.+. .+-..+...|.--..++...+..+-..++...|-.+-+-++..+-..+
T Consensus 407 ~l~~~~~~Q-~van~lnalsKWPd~-------~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 407 ELRKGLDPQ-GVSNALNALAKWPDL-------PICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred hhhhhcchh-hHHHHHHHhhcCCcc-------hhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 888876655 466777777776665 455556665555444666655544333433444344455665555455
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChH
Q 015851 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE 306 (399)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 306 (399)
+..|..=..+.++.++.+--.++...|-.+-+.++. .....+.|+.+.+... ......+...++...+-.+-+.++..
T Consensus 479 a~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~-~~l~~~~~~~~~~~~lnalSKwp~s~ 557 (2710)
T PRK14707 479 ASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE-LQLRKAFDAHQVVNTLKALSKWPDKQ 557 (2710)
T ss_pred HHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc-hhhhhhhhhHHHHHHHHhhhcCCchh
Confidence 555544333355554444333333344444344543 4445555555666532 22222222222233333333456667
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCC-HHHHHHHHHHHHHhhccC
Q 015851 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPD-VQLREMSAFALGRLAQVI 364 (399)
Q Consensus 307 v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~-~~v~~~a~~~L~~l~~~~ 364 (399)
....++..|.......+..+..+-.. -|..+++.+. -++ ...+..+.+.-..+....
T Consensus 558 ~C~~A~~~iA~~l~~~~~~~~~L~aq-~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~ 616 (2710)
T PRK14707 558 LCAVAASGLAERLADEPQLPKDLHRQ-GVVIVLNALSKWPDTAVCAEAVNALAERLVDEP 616 (2710)
T ss_pred HHHHHHHHHHHHhhcchhhHHhhhhh-HHHHHHHhhccCCCcHHHHHHHHHHHHHhccCh
Confidence 77777777777765444444444433 4556666664 344 444444445555555433
No 191
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.38 E-value=0.76 Score=44.62 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
.....++..|.....+-|...+ .++..+++++.+++..||..|.+.|..+|.++++....+ ..+|+++|.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHh
Confidence 7888899999999988887655 346779999999999999999999999998766665544 456999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc---CCChHHHHHHHHHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLG 316 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~ 316 (399)
++++.-...+-.+|..+...++.. .+..+...+. +++..+|+.+...|.
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 988776666777777766544433 2344444443 456677888776664
No 192
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.37 E-value=0.74 Score=42.77 Aligned_cols=221 Identities=14% Similarity=0.183 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
.+|+.++.-|+.-+.+++.+..+...|.++.+++.+.+..++ .+...+..++..+...+......+.......
T Consensus 37 s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ 109 (361)
T PF07814_consen 37 SVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALATAAILYVLSRDGLNMHLLLDRDSLR 109 (361)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHHHHHHHHHHccCCcchhhhhchhHHH
Confidence 688899999999999999999999999999999999766653 2444444444444433333333333445556
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh------c---CCCHHHHHHHHHHHHHhh---
Q 015851 211 PLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML------R---SEDSAIHYEAVGVIGNLV--- 277 (399)
Q Consensus 211 ~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll------~---~~~~~v~~~a~~~L~~l~--- 277 (399)
.++.++.... ..+..... .. ...+.....+ ..+..+...+ . .....-+..|+.++-.++
T Consensus 110 ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~ 181 (361)
T PF07814_consen 110 LLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSL 181 (361)
T ss_pred HHHHHhccccccccccchh------hh-hhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHH
Confidence 6677766110 00000000 00 0000000000 0111111111 0 112234444555555552
Q ss_pred -----------cCChhHHHHHHHCCCcHHHHHhhcC----CC------------hHHHHHHHHHHHHhhccChhhHHHHH
Q 015851 278 -----------HSSPNIKKEVLAAGALQPVIGLLSS----CC------------SESQREAALLLGQFAATDSDCKVHIV 330 (399)
Q Consensus 278 -----------~~~~~~~~~~~~~~~l~~L~~lL~~----~~------------~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (399)
...+..+..+...|+++.++..+.. .+ ...-..+..+|-+.+..+++++.++.
T Consensus 182 ~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~ 261 (361)
T PF07814_consen 182 REAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLL 261 (361)
T ss_pred hhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHH
Confidence 1112345666777889988888751 11 11334467788888876677776665
Q ss_pred hc--CCHHHHHH-hhC---CCCHHHHHHHHHHHHHhhccCCC
Q 015851 331 QR--GAVRPLIE-MLQ---SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 331 ~~--g~v~~L~~-ll~---~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.. +.++.+.. ++. .........++..+.|++.+.+.
T Consensus 262 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 262 SHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence 52 23332222 222 23344456778888888887764
No 193
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.35 E-value=0.42 Score=46.32 Aligned_cols=137 Identities=16% Similarity=0.156 Sum_probs=85.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (399)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 291 (399)
++...+ ++...+..|+..|.....+.|+..... +..++.++.+++..||..|+..|..+|..+++....+
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---- 97 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---- 97 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence 444444 578899999999999988888876654 5569999999999999999999999998766665544
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.+.|.++|++.++.....+-.+|..+...++.. .+..+..-+ .+++..+|+.+...|..=...-+..
T Consensus 98 -aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 98 -ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp -HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred -HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 678999999888766666666666665443322 122222222 2467778888888776555544443
No 194
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.26 E-value=1.6 Score=40.91 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=92.8
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHH-HHHhhc
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA-LRTLAF 236 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~-L~~L~~ 236 (399)
++..+++.|.+..++ ..+..++++|..++...+. +-.=...-++..+++.-.+...++...|... +..+++
T Consensus 330 iL~~l~EvL~d~~~~-------~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDE-------IIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred HHHHHHHHHccchhh-------HHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 567778888775443 7788899999999954432 2111112345556666666666665555554 555555
Q ss_pred CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHH
Q 015851 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 316 (399)
+.|..+ +..+..++...|......++..+..++..-+.---..+-.++.|.+++.-.+.+..+|+.|++||.
T Consensus 402 ~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 402 HLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred hCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 444332 333444444456666666777777777433222122234678899999999999999999999998
Q ss_pred Hhhc
Q 015851 317 QFAA 320 (399)
Q Consensus 317 ~l~~ 320 (399)
.+..
T Consensus 474 amv~ 477 (516)
T KOG2956|consen 474 AMVN 477 (516)
T ss_pred HHHH
Confidence 8863
No 195
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.17 Score=47.34 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=89.3
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC---C
Q 015851 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA---G 291 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~ 291 (399)
..+++..++..|++.|+|.+++.|+........ .+..++ .+.+..+.+|.-.+..+|..+...-. ..-+.. +
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~---~~~l~~~~l~ 342 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS---NDDLESYLLN 342 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh---hcchhhhchh
Confidence 355678999999999999999756554444443 344444 44455678999999999988763211 111122 2
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
+.-.+..+..+.+++++..|....+.++... ...+..+.+ .+....|+-.+.++++.+..++-..+..+.
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 3345566677888899999887777666432 234444443 223345555667788887766665555444
No 196
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.14 E-value=0.075 Score=38.34 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=67.4
Q ss_pred cHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhH
Q 015851 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAI 372 (399)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 372 (399)
++..+..+.++.+.+|.++...|..+..... .......+++..+...++++++-|=-+|+.+|..++...++.+++.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4556677888888999999999999986533 23333456788889999999999999999999999999998888887
Q ss_pred HHHHh
Q 015851 373 LIFII 377 (399)
Q Consensus 373 ~~~~~ 377 (399)
+....
T Consensus 83 ~~~y~ 87 (92)
T PF10363_consen 83 LDEYA 87 (92)
T ss_pred HHHHh
Confidence 76654
No 197
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.12 E-value=2 Score=37.24 Aligned_cols=199 Identities=19% Similarity=0.096 Sum_probs=112.4
Q ss_pred hhhhHHHHHHHHHHHHHHcCCh-hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851 73 LEADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~ 150 (399)
+..++..+...+..|..++.+. .+...+ +..+..+.+.+.. +.+.-+.+.+..+- .++..-
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~------------~~~~~~~rLl~~lw~~~~r~f 73 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL------------ELRYVALRLLTLLWKANDRHF 73 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch------------hHHHHHHHHHHHHHHhCchHH
Confidence 4567788899999999999876 443333 5556665555444 33445556666665 332221
Q ss_pred HHHHhcCcHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAA 227 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~--~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a 227 (399)
+.+..++..+... .........++........+..+|...++ .....++.+..++ ++.++.++..+
T Consensus 74 ------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~ala 142 (234)
T PF12530_consen 74 ------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALA 142 (234)
T ss_pred ------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHH
Confidence 2344444431111 00000111225556666788888877765 3345677888888 78889999999
Q ss_pred HHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhcCCC
Q 015851 228 AGALRTLAFKNDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC 304 (399)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~ 304 (399)
+.+|..++.. .+++ ......+.+-++. ..+.+....+..+..+.... +..........++..+.++..+.+
T Consensus 143 le~l~~Lc~~------~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 143 LEALAPLCEA------EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHHH------hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 9999999942 2222 2234555555543 35566665555555544321 112233344455666666665544
Q ss_pred h
Q 015851 305 S 305 (399)
Q Consensus 305 ~ 305 (399)
.
T Consensus 217 ~ 217 (234)
T PF12530_consen 217 V 217 (234)
T ss_pred c
Confidence 3
No 198
>PRK14707 hypothetical protein; Provisional
Probab=95.10 E-value=2.4 Score=47.08 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=155.1
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
..-+..+.+.++.+.++..++..+...-..++.++..+..+ +.-+|..++.-++.-.. +++++..+...
T Consensus 162 ~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~----------~~~c~~aa~~l 230 (2710)
T PRK14707 162 AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPD----------TPDCGNAVSAL 230 (2710)
T ss_pred cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCC----------ChhHHHHHHHH
Confidence 33455555556555566777777777777777777666555 44456666666665444 23566544444
Q ss_pred HHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC
Q 015851 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (399)
Q Consensus 140 L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 219 (399)
-..++.....+..+ +...+-..++.|.+-.+. ..-..+...|..=...++..+..+-..++-..|=.+-+.+
T Consensus 231 a~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~-------~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwp 302 (2710)
T PRK14707 231 AERLADESRLRNEL-KPQELGNALNALSKWADT-------PVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWA 302 (2710)
T ss_pred HHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCC
Confidence 45556665554443 334566777777776654 3334444443332224444444333223333333444556
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (399)
+..+-..|+..|..=..+.++....+ +...+...++.|+ -++..+-..|+.+|..-...++..++.+- ..++..+++
T Consensus 303 d~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lN 380 (2710)
T PRK14707 303 DLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLN 380 (2710)
T ss_pred CchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHh
Confidence 76555555555544443345444333 3333444454444 45555555555555443334455555443 334444554
Q ss_pred hh-cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851 299 LL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (399)
Q Consensus 299 lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 359 (399)
.+ +-++..+...|+..|..-...+++.++.+-..|+-..|-.+.+=++..+...++.+|.-
T Consensus 381 alsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 381 ALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred hhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence 44 46777888888888887666677887777777666666555565676666666665553
No 199
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.09 E-value=2.9 Score=38.94 Aligned_cols=266 Identities=18% Similarity=0.146 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHcC-C-hhHHHHHHhCCChHHHHhcccCCCCcccc--cCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 015851 80 AKRATHVLAELAK-N-EEVVNWIVEGGAVPALVKHLQAPPTSEAD--RNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (399)
Q Consensus 80 ~~~a~~~L~~l~~-~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~--~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~ 154 (399)
....+.++..+.. | |+....-. ...+..+..+|.-+.+.... +.....-..++..++..+...+ ...+.-..++
T Consensus 57 l~lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l 135 (370)
T PF08506_consen 57 LKLILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFL 135 (370)
T ss_dssp HHHHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666665 5 65433211 13344455555544332221 1112223467777777777766 3333222222
Q ss_pred hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH---------HHHHhcCChHHHH------Hhh---
Q 015851 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK---------TRVRMEGGIPPLV------ELL--- 216 (399)
Q Consensus 155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~---------~~~~~~~~i~~L~------~ll--- 216 (399)
..++..+.++|.+-......+ .+...++..|..++. .+..+ ..+...-++|.+. ++.
T Consensus 136 -~~fv~~vw~lL~~~~~~~~~D---~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEdd 210 (370)
T PF08506_consen 136 -PTFVQAVWNLLTKISQQPKYD---ILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDD 210 (370)
T ss_dssp -HHHHHHHHHHHTC--SSGGGH---HHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccC
Confidence 235666666665533322111 566667777777663 22222 1122222222221 111
Q ss_pred ---------cC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHH-hhc--CCCHHHHHHHHHHHHHhhcCChh-
Q 015851 217 ---------EF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLR--SEDSAIHYEAVGVIGNLVHSSPN- 282 (399)
Q Consensus 217 ---------~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~-ll~--~~~~~v~~~a~~~L~~l~~~~~~- 282 (399)
.. +...-|.+|+..+..|+...+.....++. +.+..++. .-. ..+..-+..|+..++.++.....
T Consensus 211 P~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~ 289 (370)
T PF08506_consen 211 PEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT 289 (370)
T ss_dssp HHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B
T ss_pred HHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc
Confidence 11 12446788899999998633322222221 12222222 111 24567788899999999854321
Q ss_pred -----------HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHH
Q 015851 283 -----------IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (399)
Q Consensus 283 -----------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~ 351 (399)
....+....++|.|. -=.+..+-++..|++.+..+-.. -....+.. ++|.++.+|.+++.-|..
T Consensus 290 ~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~--l~~~~l~~--~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 290 KSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ--LPKEQLLQ--IFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp TTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG--S-HHHHHH--HHHHHHHHTTSS-HHHHH
T ss_pred cCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh--CCHHHHHH--HHHHHHHHhCCCCcchhh
Confidence 123444445555554 11145567888899999988643 23333433 699999999999998988
Q ss_pred HHHHHH
Q 015851 352 MSAFAL 357 (399)
Q Consensus 352 ~a~~~L 357 (399)
-|+.++
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 887764
No 200
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.08 E-value=0.64 Score=47.00 Aligned_cols=193 Identities=17% Similarity=0.156 Sum_probs=118.4
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh--HHHHHh
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI--PPLVEL 215 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~l 215 (399)
+|++++ .+++....+.+.|++..+...++..... +++..+++.+.+++...+. +........+ ..+-.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-------~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-------ELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-------hHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHH
Confidence 777888 8899999999999999999999987444 8999999999999964322 1111111111 223334
Q ss_pred hcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcH
Q 015851 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (399)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (399)
+..-+ .+.-..+++.|+.+....++ ....+. -+.+...-..++...... ........-+.+
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~----~~~~~~-----------r~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~ 627 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEK----TTECVF-----------RNSVNELLVEAISRWLTS---EIRVINDRSFFP 627 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCc----Cccccc-----------hHHHHHHHHHHhhccCcc---ceeehhhhhcch
Confidence 44433 47888888888888874333 111111 112222223333333211 111122222222
Q ss_pred HHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHH
Q 015851 295 PVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFAL 357 (399)
Q Consensus 295 ~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L 357 (399)
.+..++. +..+..+.+|.|++.+++..+++..+.+.+.|+++.+.+.-.. ....+...+...+
T Consensus 628 ~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 628 RILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred hHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 2555554 4566889999999999999888888888999999888887643 2334444444433
No 201
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.07 E-value=0.16 Score=42.40 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-hhHHHHHhcCChHH
Q 015851 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPP 211 (399)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~ 211 (399)
...|+..|.-++..|+.+..+.++.+--.+..+|...+.+...+ -++..++++++.|...+. .+-..+....++|.
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fE---yLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFE---YLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccc---eeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 35677777778899999999999876666666666554443332 567789999999997544 44555667799999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc--------CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhc
Q 015851 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--------NALPTLI-LMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--------~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
+++++..+++--+..|+..+..+.- ++.+-+.+++. ..+..++ ++.+.+...+...++++--.++.
T Consensus 194 cLrIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 9999999998888889888888875 56666555542 1112222 23334566777888888887764
No 202
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.06 E-value=0.2 Score=34.29 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (399)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (399)
.+.|+|++++++..+.....+.+.+.++.++++....+.- .++-.+..+|.-++. .....+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-------siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-------SIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-------chHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 3589999999999888888888889999999999887664 788889999999884 555555454444
No 203
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.05 E-value=2.7 Score=43.01 Aligned_cols=180 Identities=13% Similarity=0.175 Sum_probs=112.2
Q ss_pred HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc----CCC----HHHH
Q 015851 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKVQ 224 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v~ 224 (399)
+.+.|++..++.++....+....+ ++....+..|..++ .-+.++..+...++++.|+..+. .+. +.+-
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 446889999999998765432222 67777888888888 45777888888999999888763 433 6777
Q ss_pred HHHHHHHHHhhcCChhhHHHH------HhcC--------CHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 225 RAAAGALRTLAFKNDENKNQI------VECN--------ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 225 ~~a~~~L~~L~~~~~~~~~~~------~~~~--------~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
+..+.++-.|... .....+ .... -+..|+..+.+ .++.+....+++|.+|+.++++....
T Consensus 189 E~LL~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~ 266 (802)
T PF13764_consen 189 EQLLEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDA 266 (802)
T ss_pred HHHHHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHH
Confidence 7777777777652 111111 1111 25666666664 36889999999999999887776555
Q ss_pred HHHCCCcHHHHHh--hc---CCChHHHHHHHHHHHHhhcc---C---hhhHHHHHhcCCHHHHHHhhC
Q 015851 287 VLAAGALQPVIGL--LS---SCCSESQREAALLLGQFAAT---D---SDCKVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 287 ~~~~~~l~~L~~l--L~---~~~~~v~~~a~~~L~~l~~~---~---~~~~~~l~~~g~v~~L~~ll~ 343 (399)
++++ +.+.+++ +. +++..+. +.+++.++.. + ...+..+++.|++...++++.
T Consensus 267 Lv~~--F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~ 329 (802)
T PF13764_consen 267 LVEH--FKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL 329 (802)
T ss_pred HHHH--HHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence 5422 1222221 11 1111222 3333333322 1 245677788888887777774
No 204
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.01 E-value=0.37 Score=40.36 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhc
Q 015851 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (399)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~ 156 (399)
-...|+..|.-++++|+.+.-|.+..+--.+..+|...+.. ++|+ .+|.-++.+++.+. +++.....+...
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~------~~fE-yLRltsLGVIgaLvkNdsq~vi~fLltT 188 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN------SKFE-YLRLTSLGVIGALVKNDSQYVIKFLLTT 188 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC------Cccc-eeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence 34577888888899999999999888766677777654432 2222 67888999999999 555666777788
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-------cCChHHHH-HhhcCCCHHHHHHHH
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-------EGGIPPLV-ELLEFTDTKVQRAAA 228 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~i~~L~-~ll~~~~~~v~~~a~ 228 (399)
.++|.+++++..+++ --+..+..++..+..++...+..... ..++..++ .+.+.+...+...++
T Consensus 189 eivPLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~i 260 (315)
T COG5209 189 EIVPLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAI 260 (315)
T ss_pred hHHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999988775 33344555555555444433321111 11222222 233456677788888
Q ss_pred HHHHHhhcCChhhHH
Q 015851 229 GALRTLAFKNDENKN 243 (399)
Q Consensus 229 ~~L~~L~~~~~~~~~ 243 (399)
++-..|+. ++..+.
T Consensus 261 RcYlRLsd-~p~aR~ 274 (315)
T COG5209 261 RCYLRLSD-KPHARA 274 (315)
T ss_pred HHheeecC-CHhHHH
Confidence 88888876 454443
No 205
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.00 E-value=0.66 Score=47.34 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=117.3
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
+.+-+.+..-+ .+.+...|.+|+..+.....++. ...+.|....+..++.....+. +..+...++.+
T Consensus 252 ~ki~~~l~t~~--~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDa--------N~~v~~~aa~~ 318 (815)
T KOG1820|consen 252 SKITKNLETEM--LSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDA--------NINVVMLAAQI 318 (815)
T ss_pred hhcChHHHHhh--hccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCc--------chhHHHHHHHH
Confidence 33344443333 34566678899999999888755 1223333333333333222111 11567788999
Q ss_pred HHHhc-C-ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 140 LGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 140 L~~l~-~-~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
|..++ . .+..+.. ..+..+.++..+..... .++..+..++-..+...+ ....++.+...++
T Consensus 319 l~~ia~~lr~~~~~~--~~~v~p~lld~lkekk~--------~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 319 LELIAKKLRPLFRKY--AKNVFPSLLDRLKEKKS--------ELRDALLKALDAILNSTP-------LSKMSEAILEALK 381 (815)
T ss_pred HHHHHHhcchhhHHH--HHhhcchHHHHhhhccH--------HHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhc
Confidence 99998 2 2333332 34577888888876655 555555555444442111 2345678899999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 218 FTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
+.++.++......+.......+ .....-.-.+.+|.++....+.+.+||..|..+++.+..
T Consensus 382 ~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 382 GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 9999999887777766665333 222222224578888889899999999999999888764
No 206
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=1.2 Score=45.42 Aligned_cols=160 Identities=15% Similarity=0.070 Sum_probs=92.8
Q ss_pred HHHHHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh---cCchhHHHHHhcCCh
Q 015851 135 GSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGI 209 (399)
Q Consensus 135 ~a~~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i 209 (399)
+|...+..++ +.++.- .+.++.+++.+.+.........+..-..-|+.++++++. .....+. ..+.-.+
T Consensus 391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHH
Confidence 4555555555 222222 346777888887543332222222455667888888874 2222222 2223334
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
+.+...++++.--+|..||+.++..+. .+.+....-..+++...+.|. +++-.|+..|+-+|..+..+.+.....+.
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 455556678778899999999999994 222222222335666777776 67779999999999998865443322121
Q ss_pred --HCCCcHHHHHhhcC
Q 015851 289 --AAGALQPVIGLLSS 302 (399)
Q Consensus 289 --~~~~l~~L~~lL~~ 302 (399)
-.+.++.|+++.+.
T Consensus 543 ~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNE 558 (1010)
T ss_pred hhhhHHHHHHHHHHHh
Confidence 12445556665554
No 207
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.41 Score=45.70 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=75.7
Q ss_pred CCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhH
Q 015851 249 NALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCK 326 (399)
Q Consensus 249 ~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~ 326 (399)
|++..++.. .++.+.+||+.|.-+|+-+|..+.. .+...+++|. +.++.+|...+.+|+-.|++.....
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 455566665 5667889999999999998865433 3555666665 6677899999999998887533221
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 327 ~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
++..|-.++.+++.-||+.|+.+++.+.....++
T Consensus 622 -------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 622 -------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred -------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 2556667888889999999999999887666654
No 208
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.58 E-value=0.98 Score=43.07 Aligned_cols=157 Identities=11% Similarity=0.178 Sum_probs=115.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhcCChhHH
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS----AIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~~~~ 284 (399)
...+++.+.+++...+..+...|..++. .+.....++...++..|.+++.+++. ++....+.++..+....- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 4567888889888888889999999998 78899999999999999999987643 566666666666543211 10
Q ss_pred HHHHHCCCcHHHHHhhc--CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 285 KEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
-......++.....+.+ .-+..+-..|+..|-++..+++.....+.+.--+..|+..++..+..++..|...+..+-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 11112233444444442 2334566778888888888777778888888889999999998899998888888888877
Q ss_pred cCCCC
Q 015851 363 VITVS 367 (399)
Q Consensus 363 ~~~~~ 367 (399)
..++.
T Consensus 243 ~a~~~ 247 (713)
T KOG2999|consen 243 KAPDD 247 (713)
T ss_pred hCChH
Confidence 77764
No 209
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=2.6 Score=41.97 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (399)
+.+.|....+++...+...++... .+++.|+..+.+.++......+..+.......+..+.. ++..++..
T Consensus 372 ~~~yRqlLiktih~cav~Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~ 441 (948)
T KOG1058|consen 372 NGKYRQLLIKTIHACAVKFPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLET 441 (948)
T ss_pred chHHHHHHHHHHHHHhhcChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHh
Confidence 356788889999988876666443 35788999999988887777777777766555555443 35556655
Q ss_pred hc-CCChHHHHHHHHHHHHhhccChhhHH--HHHh--cCCHHHHHH
Q 015851 300 LS-SCCSESQREAALLLGQFAATDSDCKV--HIVQ--RGAVRPLIE 340 (399)
Q Consensus 300 L~-~~~~~v~~~a~~~L~~l~~~~~~~~~--~l~~--~g~v~~L~~ 340 (399)
+. -.+.++...|+|.++..|....+.+. ..++ .|=+|.+..
T Consensus 442 ~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~s 487 (948)
T KOG1058|consen 442 FPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCS 487 (948)
T ss_pred hhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceehH
Confidence 54 24557888999999999876543332 2222 455555443
No 210
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.55 E-value=8.4 Score=41.71 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=81.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (399)
.+..++..+..+...+|..|+.||..+...++... ....+-..+..-+...+..||+.|+..++......++....+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 56778888888889999999999999987654432 112233344444556777999999999998877667665555
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.+ .+..-+.++...||+.+..+++.+|...|+
T Consensus 894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 894 YD-----QIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 44 355555677888999999999999998887
No 211
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.52 E-value=0.93 Score=46.27 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=105.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
.+.|..+...++.+|..|+.........+. .+.+|.++..+......++..+..++-.++...+. ....+.+
T Consensus 305 kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I 376 (815)
T KOG1820|consen 305 KDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAI 376 (815)
T ss_pred cCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHH
Confidence 456778888899999999876555533333 34788888888888888888888877776642221 2357788
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 297 IGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
+.++.+.++.++.+....+........ .....-.-.+++|.++....+.+.+||.+|..++..+.+.....
T Consensus 377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 889999999999997777776665433 22233333567889999999999999999999999998877754
No 212
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.42 Score=42.16 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=98.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
+...+..|.+.++.....++..+..|+..+++....+... ++-.+++-+++....|...||.+++.|..........
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445667788899999999999999998776655555544 5667778888888899999999999998543332222
Q ss_pred HCCCcHHHHHhhc----CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 289 AAGALQPVIGLLS----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 289 ~~~~l~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
.+..++..|. ..+..+++.|-.+|..++..- .. ..+++.|+..+.+.++.++..++.+..++...-
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v--tp-----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV--TP-----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc--Ch-----HHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 3444444432 344578888989999887432 11 123566777777778888887777666655443
No 213
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=4 Score=40.41 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
.+...+...+..+-+.+.... + -.+.+..+++-..+++..||..++..|+.++. .......-+-.+....+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D--l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED--L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh--H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHh
Confidence 455555555555554333221 2 24556667777788889999999999999986 3333334444556677777777
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQ 317 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~ 317 (399)
+..+.||..|+.+|+.+-....+- +..++..+..+++ .++++||..|+..|.+
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 889999999999999997322111 1235667777776 5777999887665543
No 214
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=6.6 Score=39.38 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 239 (399)
.+...++.++.++....+. . + ...+..+--+++++...+|..|.++|..++...|
T Consensus 260 mV~~EaArai~~l~~~~~r--~-l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSR--E-L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHHHHhhccccCHh--h-c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 5677788888888754332 1 1 1267777778889999999999999999997544
No 215
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.08 E-value=0.4 Score=39.87 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=62.9
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCChhHHHHHHH-CCCcHHHHHhhcCCChHH
Q 015851 238 NDENKNQIVECNALPTLILMLRS---------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSES 307 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v 307 (399)
.......|++.||+..|+.+|.. .+......++.|+..|... ..+...++. .+++..+...|.+++..+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 34567888899999999988852 3557889999999999854 555666665 678999999999999999
Q ss_pred HHHHHHHHHHhh
Q 015851 308 QREAALLLGQFA 319 (399)
Q Consensus 308 ~~~a~~~L~~l~ 319 (399)
+..++..|+.+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 216
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.90 E-value=0.8 Score=37.01 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=84.1
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
-|.+++.|.+++... .+..+|.+++++|+.+.. ||...+.+....- .- --..... ....
T Consensus 8 yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~------------~~~~--- 67 (160)
T PF11865_consen 8 YPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSND------------ESTD--- 67 (160)
T ss_pred hHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccc------------cchh---
Confidence 477788888888643 568899999999999988 7665443221111 00 0000000 0111
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
..+.+....+ ..+...-.-++..|++.|++.+-. .-...+..++.++... ...+-.-.-..++|.++..++
T Consensus 68 ~~l~~~~~~~-~~ee~y~~vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i~ 138 (160)
T PF11865_consen 68 ISLPMMGISP-SSEEYYPTVVINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVIR 138 (160)
T ss_pred hHHhhccCCC-chHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHHH
Confidence 1111111111 122222233678888888877654 4445667777777632 222222333567899999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 015851 218 FTDTKVQRAAAGALRTLA 235 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~ 235 (399)
+.+...++...+-|+.|.
T Consensus 139 ~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 139 TCPDSLREFYFQQLADLV 156 (160)
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 877788887777776665
No 217
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.72 E-value=5.5 Score=36.54 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=117.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhc--CCHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC--NALPTLILMLRSE-----D--------SAIHYEAVGV 272 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~--~~~~~L~~ll~~~-----~--------~~v~~~a~~~ 272 (399)
++.+...|.+..+.+...+++.|..++. ........+... -..+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888899999999999998 444566666552 2345666666421 1 2788888876
Q ss_pred HHHhh-cCChhHHHHHHH-CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh----hhHHHHHhcCCHHHHHHhhCCCC
Q 015851 273 IGNLV-HSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD 346 (399)
Q Consensus 273 L~~l~-~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~~~g~v~~L~~ll~~~~ 346 (399)
+..+. ..++..+..++. .+.+..+.+.|...++++....+.+|..-.-.++ ..+..+.....+..|..+-...+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 66655 445556666665 4568888899988888999998888885433333 34556777778889999777666
Q ss_pred H----HHHHHHHHHHHHhhccCCCCcc
Q 015851 347 V----QLREMSAFALGRLAQVITVSVL 369 (399)
Q Consensus 347 ~----~v~~~a~~~L~~l~~~~~~~~~ 369 (399)
+ .++..+-..|..+|.+...++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~ 244 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVC 244 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcccc
Confidence 6 8999999999999987776643
No 218
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.57 E-value=2.8 Score=45.08 Aligned_cols=169 Identities=12% Similarity=0.148 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
..+.++...++...+-.+. + .+.+..++..+..+.+.+|..|++||..+...++.. +....+-..+..-+.+..
T Consensus 795 ~~a~li~~~la~~r~f~~s-f--D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss 868 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSFSQS-F--DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS 868 (1692)
T ss_pred hhHHHHHHHHHhhhHHHHh-h--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch
Confidence 3445555555543332111 1 245777888888888999999999999999854432 112222233444556778
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll 342 (399)
..||..|+..+|......++..... -..+.+-+..++..||+.+...+..+|...|+-- .+.+. ...++.-.
T Consensus 869 asVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~-~i~~~--cakmlrRv 940 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFS-KIVDM--CAKMLRRV 940 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh-hHHHH--HHHHHHHh
Confidence 8999999999998776666654433 3456666677888999999999999997655432 22221 22222333
Q ss_pred CCCCHHHHHHHHHHHHHhhccCC
Q 015851 343 QSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
++....|++.+..++.++=....
T Consensus 941 ~DEEg~I~kLv~etf~klWF~p~ 963 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLWFTPV 963 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhccCC
Confidence 34344477777777777655444
No 219
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.56 E-value=0.17 Score=42.18 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=64.5
Q ss_pred CChhhHHHHHhcCcHHHHHHHHhccccCccc-cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 015851 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS-RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (399)
Q Consensus 145 ~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (399)
........|++.||+..|+.+|......... ....++...++.+|..+..........+...+++..|+..|.+++..+
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 3345667788899999999998764332111 122367888999999999544444444445688999999999999999
Q ss_pred HHHHHHHHHHhh
Q 015851 224 QRAAAGALRTLA 235 (399)
Q Consensus 224 ~~~a~~~L~~L~ 235 (399)
+..++..|..++
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 220
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.09 E-value=2.5 Score=42.92 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=114.3
Q ss_pred HHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH--HH
Q 015851 86 VLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALS--HL 162 (399)
Q Consensus 86 ~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~--~L 162 (399)
+|.++..+ ++.+..+.+.|++..+...++.-+.. +++..+...+.+++...+.+........+. .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-----------~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f 562 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-----------ELHRKILGLLGNLAEVLELRELLMIFEFIDFSVF 562 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-----------hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 56677764 99999999999999999999875332 789999999999995554444333222222 33
Q ss_pred HHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH
Q 015851 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242 (399)
Q Consensus 163 ~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 242 (399)
-.++...+.. +....++++|+.+..+.+.... . ..-+.+...-..++..... ..
T Consensus 563 ~~~~~~w~~~-------ersY~~~siLa~ll~~~~~~~~----~-----------~~r~~~~~~l~e~i~~~~~----~~ 616 (699)
T KOG3665|consen 563 KVLLNKWDSI-------ERSYNAASILALLLSDSEKTTE----C-----------VFRNSVNELLVEAISRWLT----SE 616 (699)
T ss_pred HHHHhhcchh-------hHHHHHHHHHHHHHhCCCcCcc----c-----------cchHHHHHHHHHHhhccCc----cc
Confidence 3333333321 5567777887777754432000 0 0012222222222222221 11
Q ss_pred HHHHhcCCHHH-HHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC-ChHHHHHHHHHHH
Q 015851 243 NQIVECNALPT-LILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLG 316 (399)
Q Consensus 243 ~~~~~~~~~~~-L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~ 316 (399)
..+.-...+.. +.+++. +..+..+.+|+|++.+++...+++...+...++++.+...-... -..++..+...+.
T Consensus 617 ~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 617 IRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred eeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 11111112222 444444 45678899999999999988888878888889888887764322 3344444444443
No 221
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.07 E-value=2.6 Score=34.71 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhcC-ChhhH----HHHHh-------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851 223 VQRAAAGALRTLAFK-NDENK----NQIVE-------CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (399)
Q Consensus 223 v~~~a~~~L~~L~~~-~~~~~----~~~~~-------~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (399)
+|..|+.+|..++.. ++... ..+.- ......+.-++.++++.+|..|+.++..|-.+........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577778888777763 11110 11111 1223445556778899999999999999987654433332221
Q ss_pred C-------------------CcHHHHHhhcC-CChHHHHHHHHHHHHhhccChhhH--HHHHhcCCHHHHHHhhCCCCHH
Q 015851 291 G-------------------ALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCK--VHIVQRGAVRPLIEMLQSPDVQ 348 (399)
Q Consensus 291 ~-------------------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~g~v~~L~~ll~~~~~~ 348 (399)
+ .-..|+..|+. .+..+....+.++..+....|-.+ ..+.. .++..+..++.+.|+.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCc
Confidence 1 22334444543 455777788889998887655322 11211 2345555666778999
Q ss_pred HHHHHHHHHHHhhccCC
Q 015851 349 LREMSAFALGRLAQVIT 365 (399)
Q Consensus 349 v~~~a~~~L~~l~~~~~ 365 (399)
++..+..+++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876554
No 222
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.02 E-value=0.61 Score=45.76 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=111.3
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (399)
++.+++|.|+++++..+..+|-..+.-+-+... .....+++..++|.+..-+.+.++.+|...+.++..|+..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 445789999999999999999877766665553 344567778899999999999999999999999998873211
Q ss_pred HHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
...+....+..+..+-...+..+|.+..-+|+.++...... ....-.+..+.+-++++-..-|.++..++..-...
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred -hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 12333334444444444455678888888888776442111 12222334455556666666777777777766654
Q ss_pred CCC-----CcchhHHHHHhhccccH
Q 015851 364 ITV-----SVLPAILIFIIINECQL 383 (399)
Q Consensus 364 ~~~-----~~~~~~~~~~~~~~~~~ 383 (399)
.+. +++|.+.-....+++.+
T Consensus 478 ~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 478 FDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cchhhhhhhccccccccccCcccch
Confidence 443 35555544444455444
No 223
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.01 E-value=1.6 Score=42.15 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=79.8
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHH
Q 015851 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (399)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 307 (399)
...+.......|++ ..+++ |++..++.-+.+++..||..++.+|+.+... -..+...+-.+.+..|.+-+-...+.+
T Consensus 72 ~~f~~Y~~~~dpeg-~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~V 148 (885)
T COG5218 72 KRFFEYDMPDDPEG-EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAV 148 (885)
T ss_pred HHHHHhcCCCChhh-hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33333344334444 33333 4667777777889999999999999998754 333456666778888888888888899
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHH
Q 015851 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFA 356 (399)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~ 356 (399)
|.+|+.+|+.+-.. ..+.+- .....|+.+++ +++.+||+.|...
T Consensus 149 R~eAv~~L~~~Qe~-~~neen----~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 149 RREAVKVLCYYQEM-ELNEEN----RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred HHHHHHHHHHHHhc-cCChHH----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999988632 222111 11335566664 6788888776543
No 224
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.00 E-value=0.39 Score=34.62 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=56.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
+...+..+.++.+.+|..++..|..|..... .......+++..+...++++++-+--+|..+|..++...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445667788889999999999999998443 22223356788888999999999999999999999865554
No 225
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.97 E-value=0.67 Score=45.44 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=102.8
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChh
Q 015851 208 GIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 208 ~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
+-|.+.+...+ .++.++..|.-+|..+.--..++ +. .-+|.++..+. +++|.+|.+|.-.++.++.+...
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34555566555 67899998888877655322222 22 24788998887 78999999999999998765333
Q ss_pred HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
.... .-..|.+-|...+..+++.+..++.++...+ .+.-.|-.+.+..++.+++.++...|-..+..++.
T Consensus 968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 2222 2345666677788899999999999987533 22335677888899999999999999888888886
Q ss_pred cCC
Q 015851 363 VIT 365 (399)
Q Consensus 363 ~~~ 365 (399)
...
T Consensus 1038 KdN 1040 (1128)
T COG5098 1038 KDN 1040 (1128)
T ss_pred ccc
Confidence 555
No 226
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.87 E-value=5.6 Score=38.46 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 015851 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~ 152 (399)
+...+.|..++..|..+......+..... ..+...+...... +--..-+.+|..|+ ++.+. .
T Consensus 40 ~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~-----------~d~~~~l~aL~~LT~~Grdi--~ 102 (464)
T PF11864_consen 40 NQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND-----------DDFDLRLEALIALTDNGRDI--D 102 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc-----------hhHHHHHHHHHHHHcCCcCc--h
Confidence 44567888888888888775333111111 1122223322111 11224455566666 33333 2
Q ss_pred HHhcCcHHHHHHHHhcccc-------------Ccccc------ccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851 153 IVDNGALSHLVNLLKRHMD-------------SNCSR------AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~-------------~~~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (399)
..+.+..+.|...+..... ....+ .........+..+.|+...+...-..-.-.+.+..++
T Consensus 103 ~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~ 182 (464)
T PF11864_consen 103 FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQIC 182 (464)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2456677777777753220 00000 0002334455555555543332111112234455555
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851 214 ELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (399)
Q Consensus 214 ~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (399)
.+... .++.....++..+..+..+..-. .+.++.++..|.+ +..++...+-.++.||+.+. ...
T Consensus 183 ~iC~~Ts~~~di~~~L~vldaii~y~~iP------~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~-~g~------ 249 (464)
T PF11864_consen 183 TICKSTSSEDDIEACLSVLDAIITYGDIP------SESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSH-LGH------ 249 (464)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHcCcCC------hHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCc-cHH------
Confidence 55433 33444566666666555421111 1223334444432 22366777778889998542 221
Q ss_pred CCcHHHHHhhcC------CChHHHHHHHHHHHHhhccChhhH-HHHHhc--CCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 291 GALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCK-VHIVQR--GAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 291 ~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~--g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
.++..|..+|.+ .+..+...|+..+..+..+..+.. ..+--. -+++.+...++.+++.+-......+.++-
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 246777777732 334566788888888886642222 222222 26778888887766666555555555555
No 227
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.77 E-value=1.1 Score=39.84 Aligned_cols=157 Identities=17% Similarity=0.111 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhCC--ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015851 80 AKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (399)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~ 157 (399)
+.-++..++-++.++.....+...+ +...+..++....... .+..+.-+++++.|+..++..+..+....
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~ml~lR~l~NlF~~~~~~~~~~~~~ 151 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSS--------PPANQMLALRLLANLFSHPPGRQLLLSHF 151 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTS--------SHHHHHHHHHHHHHHTTSCCCHHHHHCTH
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCC--------cHHHHHHHHHHHHHhhCCCccHHHHHhcc
Confidence 5578888988888987777665553 3556666665543221 23678889999999998888888877643
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH-HHHHhcCChHHHHHhh-cC-CCHHHHHHHHHHHHHh
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TRVRMEGGIPPLVELL-EF-TDTKVQRAAAGALRTL 234 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll-~~-~~~~v~~~a~~~L~~L 234 (399)
. ..++..+......... ....++..++..+.|++......+ ..-.....+..+.+.+ .. .+++....++-+|++|
T Consensus 152 ~-~~i~~~~~~~~~~~~~-~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL 229 (268)
T PF08324_consen 152 D-SSILELLSSLLSSLLD-SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTL 229 (268)
T ss_dssp H-TCHHHHCHCCCTTS-H-HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 2 1344444333222100 001788889999999984111100 0000112345555533 22 5799999999999999
Q ss_pred hcCChhhHHHHHh
Q 015851 235 AFKNDENKNQIVE 247 (399)
Q Consensus 235 ~~~~~~~~~~~~~ 247 (399)
... +.......+
T Consensus 230 ~~~-~~~~~~~~~ 241 (268)
T PF08324_consen 230 LSS-SDSAKQLAK 241 (268)
T ss_dssp HCC-SHHHHHHCC
T ss_pred hcc-ChhHHHHHH
Confidence 974 444444444
No 228
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.75 E-value=11 Score=37.56 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=91.4
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhH
Q 015851 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (399)
...++|.|...+++.+..++..++..+...+..-+ ..++..-++|.+..+. .+.+..++..++.|++.+...
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---- 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---- 459 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----
Confidence 35667888888899999999999999998886322 3455556788887764 356789999999999998722
Q ss_pred HHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCC
Q 015851 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (399)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~ 346 (399)
.....-...+.++....+..++.+......+..++....... ..+....++|.++.+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 122221233445555556778888777777766666443333 45555677888888776544
No 229
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.71 E-value=1.3 Score=39.33 Aligned_cols=144 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChhhHHHHHhcC--cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc-C-ChH
Q 015851 135 GSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-G-GIP 210 (399)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~i~~~~--~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~-~i~ 210 (399)
-+.-.+.-+..++.....+...+ ....+..++........ ...+..+++++.|+..+... +..+... + .+-
T Consensus 82 P~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 82 PALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSP----PANQMLALRLLANLFSHPPG-RQLLLSHFDSSIL 156 (268)
T ss_dssp HHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSS----HHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCHH
T ss_pred hHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCc----HHHHHHHHHHHHHhhCCCcc-HHHHHhcccchHH
Confidence 45555555557777766665443 24555666555443211 16778899999999965544 3334333 3 333
Q ss_pred HHHHhhcCC----CHHHHHHHHHHHHHhhcCChhhH-HHHHhcCCHHHHHHhhc-C-CCHHHHHHHHHHHHHhhcCChhH
Q 015851 211 PLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR-S-EDSAIHYEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 211 ~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~ll~-~-~~~~v~~~a~~~L~~l~~~~~~~ 283 (399)
..+..+... +..++..++..+.|++...-... ..-.....+..++..+. . .++++...++.++|++...++..
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 333333333 68899999999999986211111 00011113444555332 2 68999999999999999654443
No 230
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.49 E-value=1.4 Score=35.91 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=79.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC--CCcHHHHHhhcCCCh-HHHHHHHHHHHHhhcc---Ch
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSSCCS-ESQREAALLLGQFAAT---DS 323 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~-~v~~~a~~~L~~l~~~---~~ 323 (399)
.+..+.++|++++++-|+.++..+..++..++ ...+.++ ..+..++..|+.+++ .+.+.++.+|..+... .+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45668889999999999999999998885432 2333333 357888899986554 6677777777777643 34
Q ss_pred hhHHHHHhc---CCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcch
Q 015851 324 DCKVHIVQR---GAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLP 370 (399)
Q Consensus 324 ~~~~~l~~~---g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (399)
+..+++... ++++.+++++++ ......+..+|..+....+.-+-|
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp 151 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRP 151 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccc
Confidence 544444432 344555555543 567788999999988877764333
No 231
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.34 E-value=3.8 Score=39.68 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
.+.......+.+.-.++|.... ++ .|.+..++.-+.+++..+|...++.|+.++. .-......+-.|.+..|.+-+-
T Consensus 66 Ril~fl~~f~~Y~~~~dpeg~~-~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~ 142 (885)
T COG5218 66 RILSFLKRFFEYDMPDDPEGEE-LV-AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLF 142 (885)
T ss_pred HHHHHHHHHHHhcCCCChhhhH-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHh
Confidence 3444444444444445555433 22 4567777788888999999999999999886 3444445566677777877777
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLL 315 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L 315 (399)
+..+.||..|+.+|+.+-....+.... ....|..+++ .++.++|..|+.-|
T Consensus 143 DRE~~VR~eAv~~L~~~Qe~~~neen~-----~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 143 DREKAVRREAVKVLCYYQEMELNEENR-----IVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred cchHHHHHHHHHHHHHHHhccCChHHH-----HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 888999999999999986422221111 2345666665 45668887765543
No 232
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.30 E-value=3.3 Score=40.90 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=125.9
Q ss_pred HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (399)
...++++.+++++...+. .++...+.-+-.... .....+....++|.+..-+.+.++.+|...+.++..
T Consensus 327 yq~~i~p~l~kLF~~~Dr--------~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~ 395 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDR--------QIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAV 395 (690)
T ss_pred cccchhhhHHHHhcCcch--------HHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 345688999999988776 666555555444443 223356778889999999999999999999999998
Q ss_pred hhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHH
Q 015851 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (399)
Q Consensus 234 L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 313 (399)
|+.. =+.. ......+..+.++-.+.+..+|.+..-+|+.++...... ....-....+..-+.++-...|..+.+
T Consensus 396 La~k--L~~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~ 469 (690)
T KOG1243|consen 396 LAPK--LSKR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVL 469 (690)
T ss_pred HHhh--hchh-hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhH
Confidence 8852 1111 333334555555555667789999999999987542221 122223455666677776677888888
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
++....... +... +...++|.+..+..+++..+|..|-.++..+-.
T Consensus 470 ~l~at~~~~-~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 470 ALAATQEYF-DQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred HHhhccccc-chhh--hhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 887665432 2211 234467777777788888888888877776553
No 233
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=9.3 Score=37.01 Aligned_cols=129 Identities=22% Similarity=0.291 Sum_probs=83.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChhhHHHHHh
Q 015851 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (399)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 331 (399)
.+-.++.+.++-+|.....+++---.+.. ..+++..+++. .+..+.++++.|+.+|+-+|..+++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~------ 586 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL------ 586 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcch------
Confidence 34456677778888777766654322222 13567788887 67788899999999999988654433
Q ss_pred cCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhhccc--cHHHHHHHHhhhHhhhc
Q 015851 332 RGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINEC--QLEVLAFVLSEMVLLFC 398 (399)
Q Consensus 332 ~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 398 (399)
++-.+++| .+.++.||...+.+|+-.|..+..+.---++.- ++.+. .++-.+.+-..|.++.|
T Consensus 587 ---lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~-L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 587 ---LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEA-LMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred ---hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHH-HhhCcHHHHHHHHHHHHHHHHhhc
Confidence 44455555 467899999999999999988876533222222 23332 33444444456666665
No 234
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.17 E-value=7.4 Score=39.24 Aligned_cols=200 Identities=21% Similarity=0.199 Sum_probs=109.2
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHH
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALRT 233 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~ 233 (399)
++..+.+++....-.. ..+...|..+........ ...+..+..++++ .++.++..|+-+++.
T Consensus 396 av~~i~~~I~~~~~~~---------~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~ 461 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD---------DEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGS 461 (618)
T ss_dssp HHHHHHHHHHTT-S-H---------HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCH---------HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHH
Confidence 5667777777644321 224455555553221111 1234455666654 356788888888888
Q ss_pred hhcCChhh---------HHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851 234 LAFKNDEN---------KNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (399)
Q Consensus 234 L~~~~~~~---------~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 300 (399)
+....-.. ....+....++.+...+. ..+.+-+..++.+|+|+.. +. .++.+..++
T Consensus 462 lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~---------~i~~l~~~i 530 (618)
T PF01347_consen 462 LVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PE---------SIPVLLPYI 530 (618)
T ss_dssp HHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG---------GHHHHHTTS
T ss_pred HhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--ch---------hhHHHHhHh
Confidence 87521111 111222345666666555 4567888899999999952 33 467777777
Q ss_pred cCC---ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhccCCCCcchhHHHH
Q 015851 301 SSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITVSVLPAILIF 375 (399)
Q Consensus 301 ~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 375 (399)
... +..+|..|+++|..++...++.. .+.|+.+.. ..++++|.+|..+|.. .+++...+..+..
T Consensus 531 ~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~--~~P~~~~l~~i~~- 599 (618)
T PF01347_consen 531 EGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR--CNPSPSVLQRIAQ- 599 (618)
T ss_dssp TTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH--T---HHHHHHHHH-
T ss_pred hhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh--cCCCHHHHHHHHH-
Confidence 655 56899999999998865444322 345566664 4578898888766554 2233223333322
Q ss_pred HhhccccHHHHHHHHhhh
Q 015851 376 IIINECQLEVLAFVLSEM 393 (399)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~ 393 (399)
.+-.|...+|..++.+.|
T Consensus 600 ~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHTT-S-HHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHhc
Confidence 234566678888877654
No 235
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.15 E-value=8.3 Score=34.41 Aligned_cols=206 Identities=15% Similarity=0.125 Sum_probs=142.9
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH-----HHHhcCChHHHHHhhcCCCHHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-----RVRMEGGIPPLVELLEFTDTKVQR 225 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~~~i~~L~~ll~~~~~~v~~ 225 (399)
+.+.++|.+..+++.+....- +-+..++.+..++-....+.+. .......+..++.--.. .+++.-
T Consensus 73 qef~~~~~l~~lI~~l~~l~f--------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL 143 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEF--------ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIAL 143 (342)
T ss_pred HHHHhCCchHHHHHhhhcccc--------hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHH
Confidence 456678899999999988766 6677788888887753322221 11222344444444111 366666
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCC----cHHHHHhhc
Q 015851 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA----LQPVIGLLS 301 (399)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~lL~ 301 (399)
.+...|..... ++...+.+....-+...-..+..+.-++...|..+...+.........++...+. .+.--.++.
T Consensus 144 ~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~ 222 (342)
T KOG1566|consen 144 TCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLR 222 (342)
T ss_pred HHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhc
Confidence 66666666665 5666777777777888888888887788888888888877655555566665543 333556788
Q ss_pred CCChHHHHHHHHHHHHhhccCh---hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 302 SCCSESQREAALLLGQFAATDS---DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+++.-++..+...++.+.-..+ ...+.+.....+..+..+|++++..++-.|-..-+.+..+...
T Consensus 223 s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 223 SENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred ccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 9999999999999998875432 2333444456789999999999999999999999888877664
No 236
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.68 E-value=5.6 Score=39.51 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=84.7
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh-cCCChHHHHHHHHHHHHhhccChh
Q 015851 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSD 324 (399)
Q Consensus 246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 324 (399)
+...++|.|...+++.+..++..++..+..++..-+ ...+..-++|.+..+. .+.+..++.+++.|+..+.. .-
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--~l 460 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--RL 460 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH--HH
Confidence 344578889999999999999999999999985433 3455566778777773 46777999999999999872 11
Q ss_pred hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 325 ~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.+..+.+ .+.++.+..+..++.+......+..++.-..+.
T Consensus 461 D~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 461 DKAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 2222233 366677777788999999999998888877776
No 237
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=12 Score=39.17 Aligned_cols=260 Identities=21% Similarity=0.156 Sum_probs=152.5
Q ss_pred HHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHH
Q 015851 84 THVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH 161 (399)
Q Consensus 84 ~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~ 161 (399)
..+|..+..+ .++...|.+..++..++.++-++ +.|...++++..|- .+|.-. ....+-.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind--------------ehRSslLrivscLitvdpkqv----hhqelma 724 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--------------EHRSSLLRIVSCLITVDPKQV----HHQELMA 724 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--------------HHHHHHHHHHHHHhccCcccc----cHHHHHH
Confidence 5677787775 88888999999999999888432 44555666666665 444311 1123556
Q ss_pred HHHHHhccccC----ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC----------CCHHHHHHH
Q 015851 162 LVNLLKRHMDS----NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAA 227 (399)
Q Consensus 162 L~~~L~~~~~~----~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a 227 (399)
++..|++.--. ...+-...+....+++++.+...+-..+..+.+.+++..|...|.. ++..+-...
T Consensus 725 lVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyikl 804 (2799)
T KOG1788|consen 725 LVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKL 804 (2799)
T ss_pred HHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHH
Confidence 66777663211 1111112566777888888887777778888889998888776632 122222222
Q ss_pred HHHH---HHhhc-CChhhHHHHHhcCCHHHHHHhhcC--------------------------CCHHHHHHHHHHHHHhh
Q 015851 228 AGAL---RTLAF-KNDENKNQIVECNALPTLILMLRS--------------------------EDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 228 ~~~L---~~L~~-~~~~~~~~~~~~~~~~~L~~ll~~--------------------------~~~~v~~~a~~~L~~l~ 277 (399)
...| ..++. .++.++..+...=..+.+..+|.. ++-.--..||..+-.+-
T Consensus 805 fkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfele 884 (2799)
T KOG1788|consen 805 FKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELE 884 (2799)
T ss_pred HHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcc
Confidence 2222 22221 133333322221112222222221 11111122222222111
Q ss_pred ----c-CC-----hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC---C
Q 015851 278 ----H-SS-----PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---S 344 (399)
Q Consensus 278 ----~-~~-----~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~---~ 344 (399)
. +. ...++.+...|++..++..+-...+..+.+-...+..++..++.+...+...|+++.|+.++. +
T Consensus 885 dnifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypfls 964 (2799)
T KOG1788|consen 885 DNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLS 964 (2799)
T ss_pred cceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhc
Confidence 0 00 123467788899999999988888899999999999999888889888888999999999884 4
Q ss_pred CCHHHHHHHHHHHHHhh
Q 015851 345 PDVQLREMSAFALGRLA 361 (399)
Q Consensus 345 ~~~~v~~~a~~~L~~l~ 361 (399)
++......+..++..++
T Consensus 965 gsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 965 GSSPFLSHALKIVEMLG 981 (2799)
T ss_pred CCchHhhccHHHHHHHh
Confidence 44445555555555554
No 238
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.60 E-value=0.43 Score=40.60 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcC-------cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH-HH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNG-------ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TR 202 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~-------~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~ 202 (399)
.-|+.|+.+|..|+....|.+.+...+ .+..|++++....+. -.++.+...|.+|+..+.... ..
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~-------v~REfAvvlL~~La~~~~~~~r~i 211 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQ-------VCREFAVVLLSNLAQGDEAAARAI 211 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHhcccHHHHHHH
Confidence 457899999999996666666555443 445566666655543 788999999999998776655 44
Q ss_pred HHhcCChHHHHHhhcCCCHH
Q 015851 203 VRMEGGIPPLVELLEFTDTK 222 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~ 222 (399)
..+.+.|..|+.++++.+..
T Consensus 212 A~q~~~i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 212 AMQKPCISHLIAFIEDAEQN 231 (257)
T ss_pred HHhhchHHHHHHHHHHHHHH
Confidence 55678999999998875543
No 239
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.33 E-value=1.6 Score=35.26 Aligned_cols=144 Identities=12% Similarity=0.136 Sum_probs=82.4
Q ss_pred ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (399)
Q Consensus 105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~ 183 (399)
.++.|+++|+.+.. +.+|+.+.++|+.|. -+|--.+.+.... + .....+... ....
T Consensus 11 LL~~L~~iLk~e~s-----------~~iR~E~lr~lGilGALDP~~~k~~~~~~--~------~~~~~~~~~----~~~~ 67 (160)
T PF11865_consen 11 LLDILLNILKTEQS-----------QSIRREALRVLGILGALDPYKHKSIQKSL--D------SKSSENSND----ESTD 67 (160)
T ss_pred HHHHHHHHHHhCCC-----------HHHHHHHHHHhhhccccCcHHHhcccccC--C------ccccccccc----cchh
Confidence 46778888887743 389999999999998 5553333221111 1 000000000 1111
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
... .+. ......+......++..|+..|++++ ..-+..+..++.++.......+..+.. .++|.++..++..+
T Consensus 68 ~~l---~~~--~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~~ 141 (160)
T PF11865_consen 68 ISL---PMM--GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTCP 141 (160)
T ss_pred hHH---hhc--cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhCC
Confidence 111 111 11111223445567888999998877 445566778887777532222333333 47899999998777
Q ss_pred HHHHHHHHHHHHHhh
Q 015851 263 SAIHYEAVGVIGNLV 277 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~ 277 (399)
...++....-|+.|.
T Consensus 142 ~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 142 DSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788887777777664
No 240
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.93 E-value=15 Score=34.94 Aligned_cols=125 Identities=11% Similarity=0.147 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCC----hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851 133 EKGSAFALGLLAVK----PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (399)
Q Consensus 133 ~~~a~~~L~~l~~~----~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (399)
|-.|+-....+..+ ..++..+.++-+.+.+-+++...+.+..+.+. -.+..++.+|...|+. ++....--.-..
T Consensus 28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~-Vy~~i~itvLacFC~~-pElAsh~~~v~~ 105 (698)
T KOG2611|consen 28 RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDD-VYLQISITVLACFCRV-PELASHEEMVSR 105 (698)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHH-HHHHHHHHHHHHHhCC-hhhccCHHHHHh
Confidence 44566666666633 34566788887888888888776554444331 4556678888888853 332211112245
Q ss_pred hHHHHHhhcCC-C------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851 209 IPPLVELLEFT-D------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (399)
Q Consensus 209 i~~L~~ll~~~-~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (399)
||.+.+.++.. + ..+...+..+|..++. .+.+...++..|+++.+.++-.-
T Consensus 106 IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 106 IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhC
Confidence 88888888642 2 2377888999999998 58888999999999999987654
No 241
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=90.88 E-value=11 Score=33.57 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=137.4
Q ss_pred HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH----HHHHh-cCcHHHHHHHHhcccc
Q 015851 98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ----QLIVD-NGALSHLVNLLKRHMD 171 (399)
Q Consensus 98 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~----~~i~~-~~~i~~L~~~L~~~~~ 171 (399)
..+.+.|.+..+++-+..-+- +.+..++.+..++- .....+ +.+.. ...+..| +.. ..
T Consensus 73 qef~~~~~l~~lI~~l~~l~f------------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~l---v~~-~~ 136 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEF------------ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNL---VKG-YE 136 (342)
T ss_pred HHHHhCCchHHHHHhhhcccc------------hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHH---Hhh-hc
Confidence 456688999999998887665 67778888888887 332222 22221 2223333 332 22
Q ss_pred CccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCC-
Q 015851 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA- 250 (399)
Q Consensus 172 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~- 250 (399)
... ++...+-..|..+. ..+.....+....-+......+..++-++...|..+...+...+.....++.....
T Consensus 137 ~~~-----~iaL~cg~mlrEci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d 210 (342)
T KOG1566|consen 137 NTP-----EIALTCGNMLRECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYD 210 (342)
T ss_pred cch-----HHHHHHHHHHHHHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChh
Confidence 100 45544444455544 44555556777777888888888888899999999999988866666666665333
Q ss_pred ---HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH---HHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851 251 ---LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (399)
Q Consensus 251 ---~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (399)
.+..-.++.+++--++..+..+++.+-.+.++. .+.+.+...+..++.+|+.++..++.+|--+-.-+.+.
T Consensus 211 ~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 211 NFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred hhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 344667888888889999999999987654433 22333446788999999999999999999888877754
No 242
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.70 E-value=2.4 Score=34.99 Aligned_cols=109 Identities=24% Similarity=0.230 Sum_probs=74.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC-----CH--------------HHHHHhhcC-CCHHHHHHH
Q 015851 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-----AL--------------PTLILMLRS-EDSAIHYEA 269 (399)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~-----~~--------------~~L~~ll~~-~~~~v~~~a 269 (399)
+.+.-++.++++++|..|+.++..|..+...+-...-+.+ +. ..|+..|+. .+..+....
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4455556788999999999999999986544433333211 11 114444443 467788899
Q ss_pred HHHHHHhhcCChhHHHHHHHCCCc----HHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851 270 VGVIGNLVHSSPNIKKEVLAAGAL----QPVIGLLSSCCSESQREAALLLGQFAAT 321 (399)
Q Consensus 270 ~~~L~~l~~~~~~~~~~~~~~~~l----~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (399)
+.++..+....+..+- ..|.+ ..+..++.+.++.++..+..+++.+.+.
T Consensus 123 lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 9999999877665432 23444 4445556788889999999999988754
No 243
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.51 E-value=16 Score=34.79 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCC----hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851 78 AAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (399)
Q Consensus 78 ~~~~~a~~~L~~l~~~----~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 153 (399)
+.|..|+-...+.+.+ ..+++.+++.-|.+.+-.+|.+.+.. ++.+ +.-.+..+..+|.-+|..|+....-
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p--~dcp---d~Vy~~i~itvLacFC~~pElAsh~ 100 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGP--GDCP---DDVYLQISITVLACFCRVPELASHE 100 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCC--CCCc---HHHHHHHHHHHHHHHhCChhhccCH
Confidence 3467888888888874 45666788888888888888764331 0000 1134556777788888888765322
Q ss_pred HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
--.+.||.+++++....+... .+...+...+-.+|..++.+ +.....+...|+++.+.++-.-
T Consensus 101 ~~v~~IP~llev~~~~~d~d~-e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 101 EMVSRIPLLLEVMSKGIDTDY-EDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred HHHHhhhHHHHHHHhcCCCch-hhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhC
Confidence 222369999999987655421 11124777888889888865 5555668889999999876443
No 244
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=22 Score=35.85 Aligned_cols=282 Identities=13% Similarity=0.074 Sum_probs=150.6
Q ss_pred hhHHHHhhhhhc----ch-h-hhHHHHHHHHHHHHHHcC--C-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchH
Q 015851 60 SAQVNVLNTTFS----WL-E-ADRAAAKRATHVLAELAK--N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (399)
Q Consensus 60 ~~~~~~L~~~l~----~~-~-~~~~~~~~a~~~L~~l~~--~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 130 (399)
.+.++.+...+. .+ + +++.-.+.|++.++++.. + +.....+.+.-+++.++..+++...
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------------ 474 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------------ 474 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc------------
Confidence 445555555552 11 1 344556677777777765 3 3333445555667777777777665
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc--CC
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GG 208 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~ 208 (399)
-++..|+..+..+. .+......-..+.+...+.+++..- .++..++-++..+..++ .....+.++ +.
T Consensus 475 fL~Srace~is~~e--eDfkd~~ill~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~t 543 (970)
T COG5656 475 FLKSRACEFISTIE--EDFKDNGILLEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPET 543 (970)
T ss_pred chHHHHHHHHHHHH--HhcccchHHHHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHH
Confidence 57789999999986 2222222233456667777777433 67788888888888544 444444433 33
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHH-HhhcCChhhHHHHHhc---CCHHHHHHhhcCCC------HHHHHHHHHHHHHhhc
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVEC---NALPTLILMLRSED------SAIHYEAVGVIGNLVH 278 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~-~L~~~~~~~~~~~~~~---~~~~~L~~ll~~~~------~~v~~~a~~~L~~l~~ 278 (399)
+..|+.+-..-+.++.......+. ..+..-.....++... .++.....++..++ .+=+..|.+.|..+..
T Consensus 544 mekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~s 623 (970)
T COG5656 544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIES 623 (970)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHH
Confidence 444444444444555554444432 2221111122222221 12333333343321 1334456666655431
Q ss_pred --CChhHHHHH---HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH-HHHHH
Q 015851 279 --SSPNIKKEV---LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREM 352 (399)
Q Consensus 279 --~~~~~~~~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~-~v~~~ 352 (399)
-+-+++..+ +.....|.+--.|.+.-.+.-.+|+..+-+++-...+.. =..-|+.+.+.+++.+... .-...
T Consensus 624 miLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee 701 (970)
T COG5656 624 MILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEE 701 (970)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHH
Confidence 011111211 122344444445666667888888888888764322221 1223566777777766553 55678
Q ss_pred HHHHHHHhhccCCC
Q 015851 353 SAFALGRLAQVITV 366 (399)
Q Consensus 353 a~~~L~~l~~~~~~ 366 (399)
+.-++.|+..-+.+
T Consensus 702 ~~~al~nfityG~~ 715 (970)
T COG5656 702 VADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHHHhCcc
Confidence 88899998877654
No 245
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.96 E-value=0.79 Score=39.06 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHhCC-------ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChh-
Q 015851 78 AAAKRATHVLAELAKNEEVVNWIVEGG-------AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE- 148 (399)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g-------~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~- 148 (399)
+-|..|+++|++++-.+.+.+.+...+ ++..|++++..... +-+|+-|+-.|.+|+ .+..
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~-----------~v~REfAvvlL~~La~~~~~~ 207 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRED-----------QVCREFAVVLLSNLAQGDEAA 207 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHhcccHHH
Confidence 458899999999998777766665544 45566677765443 378999999999999 3333
Q ss_pred hHHHHHhcCcHHHHHHHHhcccc
Q 015851 149 HQQLIVDNGALSHLVNLLKRHMD 171 (399)
Q Consensus 149 ~~~~i~~~~~i~~L~~~L~~~~~ 171 (399)
.+..-.+.++|..|+.++.+...
T Consensus 208 ~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 208 ARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHhhchHHHHHHHHHHHHH
Confidence 44555578899999999987653
No 246
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=4.7 Score=35.81 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=93.2
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (399)
.+...+..|.+.+. +.....+..|..|+..++..-.... +.+|-.+++-+++....+-+.|+.++..+.+.
T Consensus 89 al~~~l~~L~s~dW--------~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ 159 (334)
T KOG2933|consen 89 ALKQALKKLSSDDW--------EDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSS 159 (334)
T ss_pred HHHHHHHHhchHHH--------HHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 34555566666554 6667777777777765543222111 34566777778888889999999999999874
Q ss_pred ChhhHHHHHhcCCHHHHHHh-hc---CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHH
Q 015851 238 NDENKNQIVECNALPTLILM-LR---SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~l-l~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 313 (399)
..+..... +..++.. +. .++.-++..|-.+|-.++.+-... .+++.|+..+.+.++.++..++.
T Consensus 160 ln~~i~~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 160 LNNSIDQE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAAL 227 (334)
T ss_pred HHHHHHHH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhc
Confidence 33333332 3333332 32 245568889999998887542222 24778888888888899999888
Q ss_pred HHHHhhc
Q 015851 314 LLGQFAA 320 (399)
Q Consensus 314 ~L~~l~~ 320 (399)
+..++..
T Consensus 228 ~~~~~v~ 234 (334)
T KOG2933|consen 228 CFSRCVI 234 (334)
T ss_pred cccccce
Confidence 8777654
No 247
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.60 E-value=2.7 Score=41.52 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=101.6
Q ss_pred hHHHHhhhhhcc--hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhccc-CCCCcccccCCCcchHHHHHHH
Q 015851 61 AQVNVLNTTFSW--LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQ-APPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 61 ~~~~~L~~~l~~--~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~~~~~a 136 (399)
++-|...+.++. .-.|+++|..|.-+|..++. ..+++.. -+|.|+..+. ++.+ .+|.+|
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P------------~IR~Na 954 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIP------------RIRANA 954 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCc------------ceeccc
Confidence 345555555542 23678899999999999877 5555443 3788888887 5555 566689
Q ss_pred HHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (399)
+-.|+.++ ......+. ...+|.+-|.+.+. .+++.++.++.+|.-.. ++.-.|-++.+..+
T Consensus 955 VvglgD~~vcfN~~~de-----~t~yLyrrL~De~~--------~V~rtclmti~fLilag-----q~KVKGqlg~ma~~ 1016 (1128)
T COG5098 955 VVGLGDFLVCFNTTADE-----HTHYLYRRLGDEDA--------DVRRTCLMTIHFLILAG-----QLKVKGQLGKMALL 1016 (1128)
T ss_pred eeeccccceehhhhhHH-----HHHHHHHHhcchhh--------HHHHHHHHHHHHHHHcc-----ceeeccchhhhHhh
Confidence 88888887 22222221 34566666766655 89999999999998543 24446888999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 015851 216 LEFTDTKVQRAAAGALRTLAF 236 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~ 236 (399)
|.+++.++...|-..+-.++.
T Consensus 1017 L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 1017 LTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred ccCCcchHHHHHHHHHHHHHh
Confidence 999999999999888888886
No 248
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.49 E-value=1.8 Score=43.62 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=91.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChh-
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPN- 282 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~- 282 (399)
.+..+.+++.+....-.. +...|..+..........+ +..+..++.. +++.++..|+-+++.+....-.
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 345566666664432222 3344444443221222222 3334445543 4567888888888888732100
Q ss_pred --------HHHHHHHCCCcHHHHHhhc----CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC---CH
Q 015851 283 --------IKKEVLAAGALQPVIGLLS----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---DV 347 (399)
Q Consensus 283 --------~~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~---~~ 347 (399)
.....+....++.+...+. ..+...+.-++.+|+|+-. +. .++.|..++.+. +.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~---------~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PE---------SIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG---------GHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--ch---------hhHHHHhHhhhccccch
Confidence 0112223346666666665 3455777778889999842 22 366677777554 78
Q ss_pred HHHHHHHHHHHHhhccCCCCcchhHHHHHhhccccHHHHHHHH
Q 015851 348 QLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVL 390 (399)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (399)
.+|..|+++|..++...++.+.+.++....-.+...+++.++.
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 8999999999999888887777777777766555555554444
No 249
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.38 E-value=25 Score=35.14 Aligned_cols=163 Identities=21% Similarity=0.210 Sum_probs=93.6
Q ss_pred hHHHHHhhcCC----CHHHHHHHHHHHHHhhcC---ChhhHHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhh
Q 015851 209 IPPLVELLEFT----DTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 209 i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~l~ 277 (399)
+..+..++.++ .+.++..++-+++++... +...+...+-...++.+...|. ..+.+-+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 45566776653 456777777777777741 1111101111224555555443 345666778899999995
Q ss_pred cCChhHHHHHHHCCCcHHHHHhhc---CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC--CCCHHHHHH
Q 015851 278 HSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREM 352 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~v~~~ 352 (399)
. +.. +..+..++. ..+..+|..|+++|..++...+... -+.|+.+.. ..++++|.+
T Consensus 475 ~--~~~---------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 H--PSS---------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred C--hhH---------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHHH
Confidence 3 332 334444443 2356899999999998875444322 234555553 468889887
Q ss_pred HHHHHHHhhccCCCCcchhHHHHHhhccccHHHHHHHHhhh
Q 015851 353 SAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEM 393 (399)
Q Consensus 353 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (399)
|..+|... +++...+..+.. .+..|...+|..++.+.|
T Consensus 536 A~~~lm~t--~P~~~~l~~ia~-~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 536 AVLVLMET--KPSVALLQRIAE-LLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHhc--CCCHHHHHHHHH-HHhhcCcHHHHHHhHHhh
Confidence 77665443 222222333322 244566778888887764
No 250
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.13 E-value=22 Score=37.39 Aligned_cols=249 Identities=16% Similarity=0.146 Sum_probs=131.9
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (399)
Q Consensus 62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L 140 (399)
.+++|..+. .+.++...+...+..+..+-. +|++-...-+.--+|.++--+..-.. .+|...+.+|
T Consensus 467 AvqmLqdiF-LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs------------slqvkiLkil 533 (2799)
T KOG1788|consen 467 AVQMLQDIF-LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS------------SLQVKILKIL 533 (2799)
T ss_pred HHHHHHHHH-HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh------------HHHHHHHHHH
Confidence 344444433 244566678888888888876 68887766677788888777765544 4444444444
Q ss_pred HHhc---CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 141 GLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 141 ~~l~---~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
..-. .....++. -.|.-+|+.+-.. .+....+.....|...+...+..+.+-|++..|-..++
T Consensus 534 EyAVtvvncvPeqEL-------lSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlk 599 (2799)
T KOG1788|consen 534 EYAVTVVNCVPEQEL-------LSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLK 599 (2799)
T ss_pred HHHHhhhccCcHHHH-------HHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3322 11122221 1233333332221 23333333333333334444444444444444433321
Q ss_pred ---------------------------------------------CCC---H--HH---HHHHHHHHHHhhcCChhhHHH
Q 015851 218 ---------------------------------------------FTD---T--KV---QRAAAGALRTLAFKNDENKNQ 244 (399)
Q Consensus 218 ---------------------------------------------~~~---~--~v---~~~a~~~L~~L~~~~~~~~~~ 244 (399)
+++ + .+ ......+|-.|...+.++...
T Consensus 600 qhkll~gpdqysgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqkl 679 (2799)
T KOG1788|consen 600 QHKLLRGPDQYSGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKL 679 (2799)
T ss_pred HhhhccCcchhhhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHH
Confidence 110 0 00 112244555666666777777
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--------C----hHHHHHHH
Q 015851 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------C----SESQREAA 312 (399)
Q Consensus 245 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--------~----~~v~~~a~ 312 (399)
+.+..++..++..+ -+++-|...++++..+....+... ++.-+-.++..|+++ + ........
T Consensus 680 FreanGvklilpfl--indehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~Isgeqyklhfsllcdlm 753 (2799)
T KOG1788|consen 680 FREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLM 753 (2799)
T ss_pred HHhhcCceEEEEee--echHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHH
Confidence 77777766666655 235667777777777765444321 111233444445431 1 23445566
Q ss_pred HHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~ 343 (399)
++++.+...+...+..+.+.+++..|...+.
T Consensus 754 GalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 754 GALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred HHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 7788877556667778888888888877773
No 251
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.85 E-value=9.5 Score=38.07 Aligned_cols=140 Identities=23% Similarity=0.213 Sum_probs=79.7
Q ss_pred hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC----ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (399)
Q Consensus 106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~ 181 (399)
+..+..++.++... -.+.++..|..+++.+.. +.......+...+++.+...|.......+. +-
T Consensus 395 l~~l~~l~~~~~~~--------~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~ 462 (574)
T smart00638 395 LKALFELAESPEVQ--------KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE----EE 462 (574)
T ss_pred HHHHHHHhcCcccc--------ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc----hh
Confidence 45555666654321 123677777777777662 111110111223667777777653221110 44
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-C--CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-F--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (399)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll 258 (399)
+...+.+|+|+.... .++.+..++. + .+..+|..|+++|..++...+.. +-+.++.++
T Consensus 463 ~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~ 523 (574)
T smart00638 463 IQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIY 523 (574)
T ss_pred eeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHH
Confidence 566788888887321 2233444443 2 34689999999999888533332 345566666
Q ss_pred cC--CCHHHHHHHHHHHHHh
Q 015851 259 RS--EDSAIHYEAVGVIGNL 276 (399)
Q Consensus 259 ~~--~~~~v~~~a~~~L~~l 276 (399)
.+ .++++|..|+.+|...
T Consensus 524 ~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 524 LNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred cCCCCChHHHHHHHHHHHhc
Confidence 54 5678998888887655
No 252
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.80 E-value=15 Score=31.83 Aligned_cols=188 Identities=19% Similarity=0.116 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851 130 HEVEKGSAFALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (399)
++++...+.+|..++.+. .+... ++..+..+.+.... +....+.+.+..+...++... +.
T Consensus 15 ~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~--------~~~~~~~rLl~~lw~~~~r~f------~~ 75 (234)
T PF12530_consen 15 PELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL--------ELRYVALRLLTLLWKANDRHF------PF 75 (234)
T ss_pred hHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch--------hHHHHHHHHHHHHHHhCchHH------HH
Confidence 378889999999999544 33222 33444444444433 444566777777776555332 22
Q ss_pred hHHHHHh--------hcC--CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhh
Q 015851 209 IPPLVEL--------LEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 209 i~~L~~l--------l~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~ 277 (399)
+..++.. ..+ ...+.......++..++...++ .....++.+..++ .+.++.++..++.+|..++
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 2222222 111 2245555556778888875555 2233567788888 7888899999999999998
Q ss_pred cCChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHhhCCCC
Q 015851 278 HSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSPD 346 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~~~ 346 (399)
... .. .+ ......+..-+.. ..+.+....+..+..+....-+ ....-....++..+.++..+.+
T Consensus 151 ~~~--vv-d~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 151 EAE--VV-DF--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHh--hc-cH--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 321 11 11 1123333343432 3334444434333333322111 1122234455666666665544
No 253
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.36 E-value=22 Score=33.26 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=116.3
Q ss_pred cchHHHHHHHHHHHHHhcCChhhHHHHHhcC---cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHH
Q 015851 127 PFEHEVEKGSAFALGLLAVKPEHQQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (399)
Q Consensus 127 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~---~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 203 (399)
+++..+..+|+++|+.+..+++....+.+.- .+...+..+.....+. .+....+|+|..--. .+ .+
T Consensus 57 p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K------~i~~~~l~~ls~Q~f-~~----~~ 125 (372)
T PF12231_consen 57 PFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPK------SICTHYLWCLSDQKF-SP----KI 125 (372)
T ss_pred CcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCC-CC----cc
Confidence 4455888999999999998888776655432 3445555554444332 555556666554332 22 13
Q ss_pred HhcCChHHHHHhh---c--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 204 RMEGGIPPLVELL---E--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 204 ~~~~~i~~L~~ll---~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
.....+..++..+ . -++..+....+.++.++....+.....-.. --+|.++..+-+....++..|..++..+..
T Consensus 126 ~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 126 MTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred cchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3333444444443 2 345678889999999999754443222211 246677766666677777776666655542
Q ss_pred CChh---HH---HHHHHCCC---------cHHHHHhhcC-CChHHHHHHHHHHHHhhccChh--hHHHHHhcCCHHHHHH
Q 015851 279 SSPN---IK---KEVLAAGA---------LQPVIGLLSS-CCSESQREAALLLGQFAATDSD--CKVHIVQRGAVRPLIE 340 (399)
Q Consensus 279 ~~~~---~~---~~~~~~~~---------l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~~g~v~~L~~ 340 (399)
.-+. .. ....+... .+.|..++.+ .+.......=.++.-+. +++. .-..+ ...+...-.
T Consensus 205 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~--n~wL~v~e~ 281 (372)
T PF12231_consen 205 CLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHL--NEWLKVPEK 281 (372)
T ss_pred HhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhH--hHHHHHHHH
Confidence 1111 11 11112122 2235555555 22222111111222222 2221 11111 123444455
Q ss_pred hhCCCCHHHHHHHHHHHHHhhc
Q 015851 341 MLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
..+++++.++..|..+=..+..
T Consensus 282 cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 282 CFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 6678899999988866665554
No 254
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.80 E-value=22 Score=36.63 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=54.0
Q ss_pred HHHHHCCCcHHHHHhhcCC--------ChHHHHHHHHHHHHhhccChhhHHHHHhc--------CCHHHHHHhhC---C-
Q 015851 285 KEVLAAGALQPVIGLLSSC--------CSESQREAALLLGQFAATDSDCKVHIVQR--------GAVRPLIEMLQ---S- 344 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--------g~v~~L~~ll~---~- 344 (399)
..+...+++..++.+.+.+ ..+....|..+|..++. -|+.+..+... .++..++..-. +
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 3455567777777776532 23567778888887775 36666665432 24455555442 2
Q ss_pred CCHHHHHHHHHHHHHhhccCCC
Q 015851 345 PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++++++.|..+|.|+....|.
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~ 695 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPT 695 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCC
Confidence 4899999999999999987753
No 255
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.04 E-value=5 Score=41.28 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=91.4
Q ss_pred CcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH
Q 015851 126 KPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (399)
Q Consensus 126 ~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 204 (399)
..+.+.++.++.-+|+++| .+..... ..+|.|++-|.....- .++-+..-+++.+|.+. .+.
T Consensus 941 ~~~~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~Y-----Tam 1003 (1529)
T KOG0413|consen 941 AMFSDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSY-----TAM 1003 (1529)
T ss_pred cccchHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHH-----HHH
Confidence 3445688999999999999 5544433 2689999988876553 56666667777777532 233
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCC-HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA-LPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
....+|.+...|.++++-+|+.+.-.|.+|.+. + .+...|. +=.++..+-+.+++++..|-.+++.+..
T Consensus 1004 ~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~--~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPSVIVRRQTIILLARLLQF--G---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh--h---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999962 1 1222222 2233333345678888888888887763
No 256
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=86.82 E-value=30 Score=33.24 Aligned_cols=239 Identities=13% Similarity=0.068 Sum_probs=113.7
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHH----HH--------HhCCChHHHHhcccCCCCcccccCCC
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVN----WI--------VEGGAVPALVKHLQAPPTSEADRNLK 126 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~--------~~~g~l~~L~~lL~~~~~~~~~~~~~ 126 (399)
.+++++.-.+++-........|..|+..|..+..++...- .. .-..+|..+.++++.+..-
T Consensus 40 ~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~i------- 112 (589)
T PF11229_consen 40 GNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVI------- 112 (589)
T ss_pred hhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHHHHHHHHHHHcCcccc-------
Confidence 4444443333332122334566777777777665321100 10 1124677777777655432
Q ss_pred cchHHHHHHHHHHHHHhc----CC-------hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc
Q 015851 127 PFEHEVEKGSAFALGLLA----VK-------PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (399)
Q Consensus 127 ~~~~~~~~~a~~~L~~l~----~~-------~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 195 (399)
.++.+++|.|++|- .. |..-..+-+..++...+.++-......+..-.......++..|....
T Consensus 113 ----glQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vg-- 186 (589)
T PF11229_consen 113 ----GLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVG-- 186 (589)
T ss_pred ----ccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcC--
Confidence 57889999999874 11 11222334555666666666433221110000134444444443332
Q ss_pred CchhHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 015851 196 NSSIKTR-VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG 274 (399)
Q Consensus 196 ~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~ 274 (399)
+..+.. +--.-.+..|+++ +..++++..++.....=+. ...+...++..-..|.++.-++.. .+.+.+.-+.
T Consensus 187 -eS~qyPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaq-SSqsAa~fLg~WlsPpli~sLs~~---tk~~L~~Sl~ 259 (589)
T PF11229_consen 187 -ESYQYPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQ-SSQSAAMFLGSWLSPPLIHSLSVN---TKKYLFESLS 259 (589)
T ss_pred -CCCCCCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhcc-ccccHHHHHHhhcCcchhhhhhHH---HHHHHHHHHH
Confidence 111100 1111234455555 3357788777765544444 455666777776777776666543 3333333333
Q ss_pred HhhcC-ChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851 275 NLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (399)
Q Consensus 275 ~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (399)
....+ .++..+.+.+.-+++.+-..-.-.++++...+..-|..
T Consensus 260 ~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsq 303 (589)
T PF11229_consen 260 LWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQ 303 (589)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Confidence 33322 23333444433333333322223445666666655554
No 257
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.15 E-value=9.3 Score=31.01 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=68.3
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhhcCCC-HHHHHHHHHHHHHh
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTD-TKVQRAAAGALRTL 234 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L 234 (399)
.+..+..+|.+.+. .-+..++..+.-.+..++. +.+.. ...+..++..++.++ +.+...++.+|..|
T Consensus 26 l~~ri~~LL~s~~~--------~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 26 LVTRINSLLQSKSA--------YSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHhCCCCh--------hhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45566777776655 5556677777777754422 23322 245788888888866 56777777777766
Q ss_pred hc---CChhhHHHHHhc---CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851 235 AF---KNDENKNQIVEC---NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (399)
Q Consensus 235 ~~---~~~~~~~~~~~~---~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 281 (399)
.. +.++..+++... ++++.++++++. ......++.+|..+....+
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 64 455656565543 334455555553 4566677777777664333
No 258
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=86.10 E-value=29 Score=32.36 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=88.2
Q ss_pred HHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--
Q 015851 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-- 217 (399)
Q Consensus 140 L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-- 217 (399)
+-+++.+++-. .+.+.+-.+.+-+-+...+.. .-+..|+..+..|+...+..-..+ +...+-.++.
T Consensus 194 ~Pnl~~~e~D~-ElfEddP~EYIrrd~e~sd~~-------TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y 261 (370)
T PF08506_consen 194 FPNLCLREEDE-ELFEDDPEEYIRRDLEGSDSD-------TRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQY 261 (370)
T ss_dssp HHHHS--HHHH-HHHHHSHHHHHHHHSCSS----------SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred cCccCCCHHHH-HHHccCHHHHHHhhccccccC-------CcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Confidence 44555433322 233344455555554432211 566788889999985322211111 1122223332
Q ss_pred ----CCCHHHHHHHHHHHHHhhcCChh------------hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851 218 ----FTDTKVQRAAAGALRTLAFKNDE------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (399)
Q Consensus 218 ----~~~~~v~~~a~~~L~~L~~~~~~------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 281 (399)
+.++.-+..|+..++.|+..... +...+....++|-|. --.+..+-++..|++.+......-+
T Consensus 262 ~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~ 340 (370)
T PF08506_consen 262 ASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP 340 (370)
T ss_dssp HH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-
T ss_pred hhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC
Confidence 34578889999999999974321 223444444555554 1123467789999999988864322
Q ss_pred hHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHH
Q 015851 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (399)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 315 (399)
. ..+ .++++.++.+|.+++.-+...|+.++
T Consensus 341 ~--~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 K--EQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp H--HHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred H--HHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2 222 34799999999999999999998775
No 259
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=85.71 E-value=68 Score=36.63 Aligned_cols=270 Identities=14% Similarity=0.125 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHHHcCC----hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 76 DRAAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
+..+...|+..|..++.. ++....-.+..++.++..++.+... .++++..+.++.++.... .
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~-----------~eVrE~ILeCv~qmI~s~---~ 1215 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNA-----------VEIRELIIRCVSQMVLSR---V 1215 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHHHHHHHH---H
Confidence 455778888888887652 2322233355677888887775433 288999999999887211 1
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-h----HHHHHhcCChHHHHHhhcCC-CHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-I----KTRVRMEGGIPPLVELLEFT-DTKVQR 225 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~i~~L~~ll~~~-~~~v~~ 225 (399)
.-+.. +=+.++.++.....+.. ..+...+..++..+..+.-. . ...+ ...|..+..+.... +.++--
T Consensus 1216 ~nIkS-GWktIF~VLs~aa~d~~----e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL 1288 (1780)
T PLN03076 1216 NNVKS-GWKSMFMVFTTAAYDDH----KNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISL 1288 (1780)
T ss_pred hhhhc-CcHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccH
Confidence 11223 34555555553211110 06777777777776642111 0 0111 12334444444333 356666
Q ss_pred HHHHHHHHhhcCChhh------------------------HHH--------HHhcCCHHHHH---HhhcCCCHHHHHHHH
Q 015851 226 AAAGALRTLAFKNDEN------------------------KNQ--------IVECNALPTLI---LMLRSEDSAIHYEAV 270 (399)
Q Consensus 226 ~a~~~L~~L~~~~~~~------------------------~~~--------~~~~~~~~~L~---~ll~~~~~~v~~~a~ 270 (399)
.|+..|++++..-.+. ... ......+|.|. .+..++.++||..|+
T Consensus 1289 ~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~AL 1368 (1780)
T PLN03076 1289 NAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSAL 1368 (1780)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7777777663210000 000 00011233333 334567889999999
Q ss_pred HHHHHhhcCC-----hhHHHHHHHCCCcHHHHHhhcCC-------------------ChH----HHHHHHHHHHHhhccC
Q 015851 271 GVIGNLVHSS-----PNIKKEVLAAGALQPVIGLLSSC-------------------CSE----SQREAALLLGQFAATD 322 (399)
Q Consensus 271 ~~L~~l~~~~-----~~~~~~~~~~~~l~~L~~lL~~~-------------------~~~----v~~~a~~~L~~l~~~~ 322 (399)
.+|-.+.... +.....+. .+++-+++..++.. +.+ ....+..+|.+++.--
T Consensus 1369 qtLF~iL~~yG~~Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf 1447 (1780)
T PLN03076 1369 QVLFDTLRNHGHLFSLPLWERVF-ESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF 1447 (1780)
T ss_pred HHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9987765321 11222222 24455555444311 001 1122333444443211
Q ss_pred hhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 323 SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 323 ~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
......+.. .+++..|..++..++..+.+.+..+|.+|......+
T Consensus 1448 t~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1448 VKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 111122211 334555555666788999999999999999877764
No 260
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.00 E-value=45 Score=33.52 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=64.7
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (399)
.+.+..+|...+..|..++.....++.-+-.++...+..-+.+..+ .+|.+|+.+|..+-.++..-
T Consensus 95 Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep------------~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 95 ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP------------NVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc------------hHHHHHHHHHHHHhcCCCCC--
Confidence 4556778999999999988854444444445666777776666665 68999999999998433221
Q ss_pred HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHH
Q 015851 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189 (399)
Q Consensus 153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L 189 (399)
+..++..+..+++..+.+ ++++.++..|
T Consensus 161 --e~~v~n~l~~liqnDpS~-------EVRRaaLsnI 188 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSD-------EVRRAALSNI 188 (892)
T ss_pred --cccHHHHHHHHHhcCCcH-------HHHHHHHHhh
Confidence 133577788888776654 8888765533
No 261
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=84.59 E-value=8.7 Score=28.03 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=54.6
Q ss_pred HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (399)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~ 358 (399)
....+..|+.+++.++.....++...|..++. .+.....+.+-|++..|-++-..-++..+...-..+.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 34578899999998888889999999999885 5778888999999999888776667766665555543
No 262
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.37 E-value=25 Score=35.15 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhc--CChhh----HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh----cCchhH
Q 015851 131 EVEKGSAFALGLLA--VKPEH----QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIK 200 (399)
Q Consensus 131 ~~~~~a~~~L~~l~--~~~~~----~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~ 200 (399)
.+|.+|+..+.++. .+|+. .+.+++. -...+..+|.++.. .++..+..-+....+ --|..
T Consensus 189 ~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p--------~VRS~a~~gv~k~~s~fWe~iP~~- 258 (1005)
T KOG1949|consen 189 EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYP--------MVRSTAILGVCKITSKFWEMIPPT- 258 (1005)
T ss_pred hhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCc--------hHHHHHHHHHHHHHHHHHHHcCHH-
Confidence 78889999999988 56654 3333432 46678888887766 455444333333222 11110
Q ss_pred HHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 201 TRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (399)
+ -...+..+..-+.. ...++|......|-.+.. +|... -+.+. ++|.+-..|.++.+.||..+...|..|-..
T Consensus 259 --i-~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh-~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 259 --I-LIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSH-PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred --H-HHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccch-hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 1 11223333333333 336889988888888886 44432 22222 466666777788899999998888877421
Q ss_pred ChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
....+.+---++.++.-|...+..+.+.-+..|.+.+
T Consensus 333 ---ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 333 ---RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred ---hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 1122333334555666666655555555555555444
No 263
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.64 E-value=21 Score=31.86 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=50.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH-HHHHhcCCHHHHHHhh----c--------CCCHHHHHHHHHHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILML----R--------SEDSAIHYEAVGVI 273 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~ll----~--------~~~~~v~~~a~~~L 273 (399)
-++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-..+ . .+...+...+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 568999999999999999999999999997433332 2366677666554433 3 23446777777777
Q ss_pred HHhh
Q 015851 274 GNLV 277 (399)
Q Consensus 274 ~~l~ 277 (399)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 264
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.59 E-value=31 Score=30.47 Aligned_cols=215 Identities=12% Similarity=0.083 Sum_probs=114.3
Q ss_pred hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
.++|...|.+|+..|..+... +... ....-+..|++++.+.-. ++.....++.++..|........
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~----------D~~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD----------DHACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc----------cHhhHHHHHHHHHHHHhCcCCCh
Confidence 567888999999999988774 3211 111224444444433211 11333344666666552222111
Q ss_pred HHHhcCcHHHHHHHHhcc-ccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAG 229 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~ 229 (399)
+....+++.+... +..... ...+..+...+..+.......- .-...+.+..++..+.. .||...-.+..
T Consensus 76 -----~~~~~i~~~l~~~~~~q~~~---q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~ 146 (262)
T PF14500_consen 76 -----ESAVKILRSLFQNVDVQSLP---QSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFK 146 (262)
T ss_pred -----hhHHHHHHHHHHhCChhhhh---HHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHH
Confidence 1122333332221 111100 1567777788888875432211 11234567777777765 46888877777
Q ss_pred HHHHhhcCChhhHHHHHhcCCHHHHHHhhc--------C--CCH--HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 230 ALRTLAFKNDENKNQIVECNALPTLILMLR--------S--EDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~--------~--~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
.+..+....+- ....+-+-..+. . +++ -.+..-...|.+....++... .-.++.|+
T Consensus 147 l~~~i~~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~Ll 214 (262)
T PF14500_consen 147 LLKVILQEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLL 214 (262)
T ss_pred HHHHHHHhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHH
Confidence 77777653331 122333333332 1 122 233334444444333334332 23689999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcc
Q 015851 298 GLLSSCCSESQREAALLLGQFAAT 321 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~ 321 (399)
+-|.++.+.++..++.+|..++..
T Consensus 215 eKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 215 EKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 265
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=83.57 E-value=34 Score=31.02 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhc-------C----CHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChh
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKNQIVEC-------N----ALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-------~----~~~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
...+|.+|+.++.....++++.+..+++. + ....+...|- +.|+--.+.|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 46889999999999998888888777652 0 1112444443 33565677899999999988777
Q ss_pred HHHHHHHC------------CCcHHHHHhhcC-----CChHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHhhC-
Q 015851 283 IKKEVLAA------------GALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQ- 343 (399)
Q Consensus 283 ~~~~~~~~------------~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~g~v~~L~~ll~- 343 (399)
.+..+..- ..++.+..+|.. .++.++..-+..|.-....++.....+.. .+.++.|+....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 76665432 145556666543 35566666666777777777877776665 468899999763
Q ss_pred --CCCHHHHHHHHHHHHHhhccC
Q 015851 344 --SPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 344 --~~~~~v~~~a~~~L~~l~~~~ 364 (399)
+.+.-|+-.++..|+.+.+.+
T Consensus 211 ~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHT-
T ss_pred CCCCcchHHHHHHHHHHHHHHhc
Confidence 457778888888888887744
No 266
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=83.47 E-value=21 Score=29.41 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=52.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
..+|.+..=|...+...+..|...+..+.......+-..+-...+.++...|++.++++...++.+|..++..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 457777777777666666677777777664412222233335677788888999999999999999999965444
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.45 E-value=10 Score=29.42 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=61.1
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHhhCC---CCHHHHHHHHHHHHHhhccCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++..|.+-|+++++.++..|+..|-.+...... ....+....++..|++++.. .++.|+..+...+...+...++
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 577888888999999999999999988876544 45566666788889999864 5889999999999999987665
No 268
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=9.7 Score=38.15 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=95.4
Q ss_pred cCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhc--CChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851 248 CNALPTLILMLRS--------EDSAIHYEAVGVIGNLVH--SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (399)
Q Consensus 248 ~~~~~~L~~ll~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (399)
.|+++-+...|.. +++.-.+.|++.++++.. ..+.....+.+.=+++.++..++++.--.+..||..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4678888888832 223444566777777653 222333444444567777778888877899999999998
Q ss_pred hhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-----cchhHH-HHHh-hccccHHHHHHHH
Q 015851 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-----VLPAIL-IFII-INECQLEVLAFVL 390 (399)
Q Consensus 318 l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~-~~~~-~~~~~~~~~~~~l 390 (399)
+.. +-...-.-..+.+...+++++++-.|+-.|+-|+.-+..+..-+ .+|..+ +++. ..+-+++++..+.
T Consensus 487 ~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 487 IEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 843 22222222334566777888888889999999999888777532 334443 4443 3444888888888
Q ss_pred hhhHhhh
Q 015851 391 SEMVLLF 397 (399)
Q Consensus 391 ~~~~~~~ 397 (399)
.+|+.-+
T Consensus 564 e~fVe~f 570 (970)
T COG5656 564 ESFVEYF 570 (970)
T ss_pred HHHHHHh
Confidence 8877543
No 269
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.98 E-value=6.5 Score=31.01 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=61.8
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++..|.+-|.++++.++..|+..|-.+.... ......+.+.+++..|.+++. ..++.|+..+...+...+....+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 5777888888899999999999888887653 445667778889999999996 57889999999999999976654
No 270
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.51 E-value=8.2 Score=30.02 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=57.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-HHHHHHHCCCcHHHHHhhcC---CChHHHHHHHHHHHHhhcc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSS---CCSESQREAALLLGQFAAT 321 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~l~~~ 321 (399)
++..|.+-|.++++.++..|+.+|-.+..+... ....+.+..++..|+.++.. .++.++..+...+.+.+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466788888899999999999999999876544 55556666888889999875 4678999999988888753
No 271
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.73 E-value=9.4 Score=29.97 Aligned_cols=75 Identities=9% Similarity=0.021 Sum_probs=61.0
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCC------CCHHHHHHHHHHHHHhhccC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~ 364 (399)
++..+.+-|+++++.++..|+..|-.+.... ......+...+++..|++++.. .+..|+..+...+...+...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5677888888999999999999888887643 4556777788889999999952 57899999999999999766
Q ss_pred CC
Q 015851 365 TV 366 (399)
Q Consensus 365 ~~ 366 (399)
++
T Consensus 119 ~~ 120 (139)
T cd03567 119 PH 120 (139)
T ss_pred cc
Confidence 53
No 272
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.36 E-value=8.1 Score=38.38 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=93.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcC-Chhh----HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851 210 PPLVELLEFTDTKVQRAAAGALRTLAFK-NDEN----KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~----~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (399)
|.|..-|+-.|..+|..|+..+.++--- .|+. ...+++. -...|.++|+++-+.+|..|..-+..+... .
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f- 251 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK---F- 251 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H-
Confidence 5566667888999999999999887631 2222 2223332 356788999999999999888777666421 1
Q ss_pred HHHHHCC----CcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851 285 KEVLAAG----ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (399)
Q Consensus 285 ~~~~~~~----~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 359 (399)
-.++-.. .+..++.-+. ....++|......|..+.. +|..-. +.+. ++|.|-..|++++..||.+++..|..
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~-~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHP-LLEQ-LLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccchh-HHHH-HHHhcchhhhccchhHHHHHHHHHHH
Confidence 1111111 2222332232 3444788888888888874 343322 2222 35677777888899999999988887
Q ss_pred hhccCC
Q 015851 360 LAQVIT 365 (399)
Q Consensus 360 l~~~~~ 365 (399)
+-..-.
T Consensus 329 ik~vra 334 (1005)
T KOG1949|consen 329 IKAVRA 334 (1005)
T ss_pred HHhhhh
Confidence 764433
No 273
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=81.04 E-value=28 Score=32.43 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=92.2
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc----------CCCHHHHHHHHHHHHHhhc
Q 015851 210 PPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----------SEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 210 ~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~v~~~a~~~L~~l~~ 278 (399)
..+...|.++. +..+...+.++.-|+. ....-..+.....+..|+.+.. ..+..+..+++.+|.|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 44566666655 4455666666766665 2333222222223333443322 1345889999999999999
Q ss_pred CChhHHHHHHHCCCcHHHHHhhcCC-----ChHHHHHHHHHHHHhhccChhhHHHH-HhcCCHHHHHHhhCC--------
Q 015851 279 SSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVHI-VQRGAVRPLIEMLQS-------- 344 (399)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~g~v~~L~~ll~~-------- 344 (399)
+++..+...........+.+.+... ...+...-...|.-++.-..+.+..+ .+.++++.+.+.+.+
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 9888888888888777777665321 11233333334444443345565554 568888999888853
Q ss_pred -CC------HHHHHHHHHHHHHhhccCCC
Q 015851 345 -PD------VQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 345 -~~------~~v~~~a~~~L~~l~~~~~~ 366 (399)
.. ......+..++.|+..++..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~~~k 235 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCDSDK 235 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeecccc
Confidence 11 12445666677777776664
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.95 E-value=8.5 Score=30.43 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=59.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-+.+.++.++..|+..|-.++.+.. .....+.+.+++..|..++.. .++.|+..+...|...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56678888889999999999999999986544 455677788899999999987 777999999998888864
No 275
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.56 E-value=8.2 Score=30.45 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=58.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-|.++++.++..|+..|-.+..+. ......+.+.++++.|..++. ..++.|+..++..+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 5667888888999999999999999988653 445667778889999999987 5677899999988888774
No 276
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.16 E-value=9.2 Score=30.23 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=62.5
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++..|.+-|.++++.++..|+..|-.+..... .....+...+++..|.+++.. .++.|+..+...+...+....+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 56777777888999999999998888886543 455677788899999999976 7999999999999999976664
No 277
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.07 E-value=25 Score=34.00 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=76.4
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc----------CCCHHHHHHH
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------FTDTKVQRAA 227 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~v~~~a 227 (399)
.+|+++.++...-.......+.++....+...+.|. +++.+.-..+-+..+|.++.++- ++...+|..|
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA 318 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA 318 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence 567777777654322111122367777888888888 67776555555677887777652 2347799999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 015851 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLV 277 (399)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~ 277 (399)
+..+..++....+.... ....++..+.+.+.++ ......-++..|..+.
T Consensus 319 A~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 99999999754433333 5556777788777664 4466666666666664
No 278
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=79.99 E-value=7.6 Score=35.81 Aligned_cols=129 Identities=20% Similarity=0.202 Sum_probs=75.8
Q ss_pred HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-
Q 015851 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE- 217 (399)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~- 217 (399)
+|..|..++...+ .+|.+++++...-...... +.......+..+..|. .++...-..+-+..+|.++.++-
T Consensus 198 aL~sL~tD~gl~~------LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl-~N~~l~le~Ylh~Lip~vltclv~ 269 (343)
T cd08050 198 ALQSLRTDPGLQQ------LLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALL-DNPNLHLEPYLHQLIPSVLTCLVA 269 (343)
T ss_pred HHHHhccCCCchh------hhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHh-cCCCCchHHhHHHHHHHHHHHhhh
Confidence 4444554444433 6788888876542211100 1266777788888888 56666555555668888887762
Q ss_pred ---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHh
Q 015851 218 ---------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED--SAIHYEAVGVIGNL 276 (399)
Q Consensus 218 ---------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~a~~~L~~l 276 (399)
.+...+|..|+..|..++......... +...+...+.+.+.++. .....-|+..|..+
T Consensus 270 ~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 270 KQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 133689999999999999743222111 22334445555555432 23466666666655
No 279
>PRK09169 hypothetical protein; Validated
Probab=79.29 E-value=1.3e+02 Score=34.92 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=42.0
Q ss_pred HhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc
Q 015851 65 VLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (399)
Q Consensus 65 ~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~ 144 (399)
.+.+.++.+.++..++..+...=..++.++..+..+-..+ +..++.-|+..... +.++..+..+-..|.
T Consensus 167 ~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~-va~~lnalSKwp~~----------~~cr~a~~~lA~rL~ 235 (2316)
T PRK09169 167 LLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQE-VANALNALSKWPDS----------PRCRNAAERLAERLA 235 (2316)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHH-HHHHHHHHhcCCCc----------HHHHHHHHHHHHHHh
Confidence 3334444333444455554444444555566665543333 33334444433221 134443433334444
Q ss_pred CChhhHHHHHhcCcHHHHHHHHhccccC
Q 015851 145 VKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (399)
Q Consensus 145 ~~~~~~~~i~~~~~i~~L~~~L~~~~~~ 172 (399)
.++..+..+- .--+..+++-|++=.+.
T Consensus 236 ~~~~l~~~l~-~q~va~~LNAlSKWp~~ 262 (2316)
T PRK09169 236 DEPGLLQSLR-AQEVALLLNALSKWPDD 262 (2316)
T ss_pred cChHHHHhcC-HHHHHHHHHHHhcCCCC
Confidence 5555443322 22345555555554443
No 280
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=79.15 E-value=40 Score=29.44 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=71.6
Q ss_pred cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHH
Q 015851 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRT 233 (399)
Q Consensus 156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~ 233 (399)
..+++.++++++.+++....-...-+.+....++..++ .|-+..|.+++.+++ .-+|..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 44789999999766542100000012222223333333 456777888888876 5689999999999
Q ss_pred hhcCChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcC-ChhHHHHHHHCCCcHH
Q 015851 234 LAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQP 295 (399)
Q Consensus 234 L~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~ 295 (399)
++...+..+..+++. +..++.. +..++..+...-+..+..|... .-..+..+.+.|.++.
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 999888888888775 4444433 5444444444444444444311 1123345556676654
No 281
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=78.49 E-value=33 Score=32.58 Aligned_cols=253 Identities=10% Similarity=0.062 Sum_probs=126.6
Q ss_pred HHHHHHHHcCChhH--HHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcH
Q 015851 83 ATHVLAELAKNEEV--VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL 159 (399)
Q Consensus 83 a~~~L~~l~~~~~~--~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i 159 (399)
+-..|..+..++.. ....+....+..|+.++.++++.. |.....+|.++- ..+..|..+.. ...
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rE------------R~~lk~~l~~iy~k~~~~r~~Ir~-~i~ 176 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRE------------RDYLKTILHRIYGKFPNLRSFIRK-SIN 176 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHH------------HHHHHHHHHHHHHH-TTTHHHHHH-HHH
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHH------------HHHHHHHHHHHHHHhhhhHHHHHH-HHH
Confidence 34445555443222 223445566888999999988744 446666777766 45555555443 245
Q ss_pred HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-hhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcC
Q 015851 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFK 237 (399)
Q Consensus 160 ~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~ 237 (399)
..+.+++...... .-....+..++.+..+-. ..++.. ..-....++.+.+... .........++......
T Consensus 177 ~~~~~fi~e~~~~-------~gI~elLeil~sii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k 248 (409)
T PF01603_consen 177 NIFYRFIYETERH-------NGIAELLEILGSIINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK 248 (409)
T ss_dssp HHHHHHHHTTS---------STHHHHHHHHHHHHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccc-------cCHHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 5666666644332 223446667777664321 111100 0111233344444444 34455666666666654
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (399)
++.....+++. +++.=-..+..=....+.-+..+...-+.....-+...+...+...+++.+..|.+.|+..+.|
T Consensus 249 dp~l~~~~i~~-----llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 249 DPSLAEPVIKG-----LLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp -GGGHHHHHHH-----HHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred CchhHHHHHHH-----HHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 55443333221 2222112333323334444555543322222222233456777777889999998888765433
Q ss_pred hhccChhhHHHHHh--cCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhccCCC
Q 015851 318 FAATDSDCKVHIVQ--RGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 318 l~~~~~~~~~~l~~--~g~v~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+.....+.+ ..++|.+..-+.. =+..|+..|..++..+..-++.
T Consensus 324 -----~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 324 -----EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp -----HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHH
T ss_pred -----HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHH
Confidence 222222211 2245666665532 2677999999999999876653
No 282
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=77.53 E-value=56 Score=29.69 Aligned_cols=141 Identities=22% Similarity=0.140 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhc-----------CChHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChhhH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRME-----------GGIPPLVELLE------FTDTKVQRAAAGALRTLAFKNDENK 242 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~i~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~ 242 (399)
+++..++.++.....+++..+..+... .....|...|- +.|+--.-.|+.+|..+..+++..+
T Consensus 53 ~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~K 132 (312)
T PF04869_consen 53 DLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEAK 132 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 788999999999998888888777642 11223444444 3345445678889999998888887
Q ss_pred HHHHhc--C----------CHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC-CcHHHHHhhc---
Q 015851 243 NQIVEC--N----------ALPTLILMLR-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIGLLS--- 301 (399)
Q Consensus 243 ~~~~~~--~----------~~~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~--- 301 (399)
+.+..- | .++.+..+|. ..++.++..-+..|.....+++.....++..+ .++.|+....
T Consensus 133 e~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~ 212 (312)
T PF04869_consen 133 EQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSS 212 (312)
T ss_dssp HHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--T
T ss_pred HHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCC
Confidence 776542 1 2444555543 34677777777788777777788888888775 6899998754
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 015851 302 SCCSESQREAALLLGQFAA 320 (399)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~ 320 (399)
+.+.-++--++..|+-+-.
T Consensus 213 ~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 213 SEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 2344556556666665544
No 283
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=77.17 E-value=64 Score=30.18 Aligned_cols=268 Identities=14% Similarity=0.076 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHhCC---ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGG---AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
.+..+-.+|+.+|+.+..+++....+-+.. ++...+..+.++... -.+....+|+|..--..+.
T Consensus 58 ~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~----------K~i~~~~l~~ls~Q~f~~~--- 124 (372)
T PF12231_consen 58 FDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP----------KSICTHYLWCLSDQKFSPK--- 124 (372)
T ss_pred cchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHcCCCCCc---
Confidence 366788899999999999887766554443 344444555443321 1444555555554333332
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc-CChHHHHHhhcCCCHHHHHHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEFTDTKVQRAAAGA 230 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~ 230 (399)
++....+..++..+..-.+..... .+....+.++.++....+.. ++... ..++.++..+-+....++..|...
T Consensus 125 -~~~~~~~~~l~~~l~~i~~~~~s~---si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l 198 (372)
T PF12231_consen 125 -IMTSDRVERLLAALHNIKNRFPSK---SIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISL 198 (372)
T ss_pred -ccchhhHHHHHHHHHHhhccCCch---hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 334445556666555433211111 78888999999999766542 22222 367788877777777787776665
Q ss_pred HHHhhcCCh---hhHHH---HHh----cC-----CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHH
Q 015851 231 LRTLAFKND---ENKNQ---IVE----CN-----ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (399)
Q Consensus 231 L~~L~~~~~---~~~~~---~~~----~~-----~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (399)
+..+...-+ ..... ..+ .+ ..+.|..++.+.+......=+|...-+.-+.+....--.-...+..
T Consensus 199 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 199 LLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKV 278 (372)
T ss_pred HHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHH
Confidence 554442111 11111 111 11 2233555555533322222233222222122211000111123333
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhc---cChhhHHHHHhcCCHHHHHHhhC-CCCH----HHHHHHHHHHHHhhc
Q 015851 296 VIGLLSSCCSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQ-SPDV----QLREMSAFALGRLAQ 362 (399)
Q Consensus 296 L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~v~~L~~ll~-~~~~----~v~~~a~~~L~~l~~ 362 (399)
.-..++++++.++..|..+-..+.. .++......... +..++..-++ .... .++..+...++++-.
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 3345667888888888765554442 222222222222 2233333343 2233 677777777777664
No 284
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.75 E-value=85 Score=31.37 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHh----CCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 76 DRAAAKRATHVLAELAKNEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~----~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
..+.+.-|+.+|+-+..+......+.. ...+..++..+.. ++..+..++++|.|+..++..++
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~-------------~~an~ll~vR~L~N~f~~~~g~~ 623 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA-------------DPANQLLVVRCLANLFSNPAGRE 623 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc-------------chhHHHHHHHHHHHhccCHHHHH
Confidence 345666788888887776433333322 2344555555541 22567789999999998888888
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRA 226 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~ 226 (399)
.+... ...++..+.......+ ..++........|++.---. .-.+.++.+.+...+.. ++-+....
T Consensus 624 ~~~s~--~~~i~~~~~~~~s~~~----knl~ia~atlaln~sv~l~~---~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR 694 (745)
T KOG0301|consen 624 LFMSR--LESILDPVIEASSLSN----KNLQIALATLALNYSVLLIQ---DNEQLEGKEVLLSAISTLLEPVDDLEAIYR 694 (745)
T ss_pred HHHHH--HHHHhhhhhhhhcccc----hhHHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHhhcccchhHHHHHH
Confidence 77653 3333333322211110 05555555555555521000 00113445555444432 22345667
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (399)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (399)
++.+|++|+. .+.....+...-.+..+++-+++
T Consensus 695 ~l~AlgtL~t-~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 695 LLVALGTLMT-VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHhhcc-ccHHHHHHHHhcCHHHHHHHHHH
Confidence 7889999998 46666666666667777766654
No 285
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=76.74 E-value=5.1 Score=29.67 Aligned_cols=40 Identities=33% Similarity=0.337 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCc
Q 015851 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS 119 (399)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 119 (399)
...++..|..++..|+.-..+++.|+++.|+++|.+++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~D 102 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTD 102 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcc
Confidence 3567888899999999988999999999999999998874
No 286
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=76.67 E-value=63 Score=32.95 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCCC
Q 015851 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 304 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.+..|..++..|+.+....+.....+.+..+++.|+++|. +.+..+...|+.+|..|-=.-++.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch
Confidence 3468889999999999887888889999999999999996 678888889999988887666654
No 287
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.96 E-value=17 Score=28.58 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=57.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhcC------CChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~ 320 (399)
++..+.+-+.++++.++..|+.+|-.+..+. ......+...+++..|++++.. .+..|+...+..+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667888889999999999999999988643 4455677788899999999953 467899998888887764
No 288
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=75.68 E-value=92 Score=31.23 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (399)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 347 (399)
.|+--++-++.+.+-. ..+ .+..+-++|..+++.+|+..-.+++-++..+|.. +++..|-++.++.+.
T Consensus 622 ~avLgiAliAMgeeig-~eM----~lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~ 689 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIG-SEM----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDL 689 (878)
T ss_pred chhhhhhhhhhhhhhh-hHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcch
Confidence 4444445555543322 222 4677778888899999999889999888777644 346788899999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcchhHH
Q 015851 348 QLREMSAFALGRLAQVITVSVLPAIL 373 (399)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~~~~~~ 373 (399)
++..++..+++-+...+.|.=+..++
T Consensus 690 eva~naIfamGLiGAGTnNARla~mL 715 (878)
T KOG2005|consen 690 EVAMNAIFAMGLIGAGTNNARLAQML 715 (878)
T ss_pred HHHHHHHHHhccccCCcchHHHHHHH
Confidence 99999999999999888875344433
No 289
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.64 E-value=18 Score=37.51 Aligned_cols=130 Identities=17% Similarity=0.257 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (399)
+.++..+.-+|++++..++.... ..+|.|++=|... ...+|.+..-+++.+|.+ ..+.....+|.+..-
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~-----YTam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS-----YTAMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH-----HHHHHHHhhHHHHHH
Confidence 55788888889998875444322 3578888888754 457888888888888753 223334578999999
Q ss_pred hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcC--CHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 300 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g--~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
|..+++-+|+++.-.|++|...+ .+.-.| ++..++.++ +.+++++.-|-..++.+-....+
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999997531 121222 223344444 56899999999999988765443
No 290
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.53 E-value=32 Score=30.74 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=48.5
Q ss_pred ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChh-hH-HHHHhcCcHHHHHHHHhcccc----Ccccccc
Q 015851 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPE-HQ-QLIVDNGALSHLVNLLKRHMD----SNCSRAV 178 (399)
Q Consensus 105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~-~~i~~~~~i~~L~~~L~~~~~----~~~~~~~ 178 (399)
++|.++.++++... ..|..++.+|..+..+.. .. ..+...|..+.+-+.+...-. .......
T Consensus 120 iiP~iL~llDD~~~------------~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 120 IIPPILNLLDDYSP------------EIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HHhhHHHHhcCCCH------------HHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 58999999998766 889999999999984322 22 345566755555444432110 0000111
Q ss_pred HHHHHHHHHHHHHHhh
Q 015851 179 NSVIRRAADAITNLAH 194 (399)
Q Consensus 179 ~~~~~~a~~~L~~l~~ 194 (399)
..+...+..+|..|+.
T Consensus 188 ~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 188 LELLQAAYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2677777788888753
No 291
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=74.65 E-value=18 Score=30.57 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=52.8
Q ss_pred hhHHHHHhcCcHHHHHHHHhccccCc----------cccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 148 EHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 148 ~~~~~i~~~~~i~~L~~~L~~~~~~~----------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
..+..+.+.|++..++.+|....... ......++...+...|..++.++...+..+..+ ++.+...+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 45566778899999999998754432 111223678889999999999888888777655 443333333
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
......-..+..++..+..++++....+.+.. +..++.++..... ...-+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr--~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGR--QPRYLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCC--ChHHHHHHhhhcc
Confidence 22221223456667777776777666665553 7788888766322 2224555666654
No 292
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.05 E-value=6.2 Score=35.74 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChhhHHHHHh
Q 015851 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (399)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (399)
....+++||...+.++..+...+|++.++.-. .+.+|-+++....++.+|...+.++++.+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 66789999999999999999999999888764 4567999999999999999977777776655
No 293
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.53 E-value=33 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=52.3
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 015851 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273 (399)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 273 (399)
....+..|++.+..++......++..+..++. ++.....+.+-|+++.|.++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566778888888887789999999999997 688888889999999877777666666665544443
No 294
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=72.52 E-value=1e+02 Score=30.26 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHh--c-cccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK--R-HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~--~-~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (399)
++...|-..|..+..+-+ +...+..|..+.. . ..+.........++...+..|..=.. . .-.-..
T Consensus 252 ~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~---A---a~~~~~ 319 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI---A---ATSFPN 319 (501)
T ss_pred hHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH---H---HhCCcc
Confidence 677788888888884422 2335666666666 2 11111111112555554444433210 0 001123
Q ss_pred ChHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCChhhH----HHHHhcCCHHHHHH----hhcCCCHHHHHHHHHHHH
Q 015851 208 GIPPLVELLEFT--DTKVQRAAAGAL---RTLAFKNDENK----NQIVECNALPTLIL----MLRSEDSAIHYEAVGVIG 274 (399)
Q Consensus 208 ~i~~L~~ll~~~--~~~v~~~a~~~L---~~L~~~~~~~~----~~~~~~~~~~~L~~----ll~~~~~~v~~~a~~~L~ 274 (399)
.+..+..-+.+. +..++..++..+ .....+..... ...+..+++|.+-. --...+.+.|..+..+||
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 334444445555 567777777777 44444333222 22344566665510 112346789999999999
Q ss_pred HhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (399)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 321 (399)
.|+...+... .-+-+.+..|..-|..+.++++...-.+|+.++..
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9997655432 12345788888888888889998888888888754
No 295
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=72.16 E-value=90 Score=36.62 Aligned_cols=161 Identities=19% Similarity=0.129 Sum_probs=96.3
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
..+.+.+..+...+.++...++..+...+++++..++...-.....-.+..+-.+..+....+......-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 34445566666777788889999999999999987774433222222222222222222222222333222222222122
Q ss_pred HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhh
Q 015851 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLA 361 (399)
Q Consensus 283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~ 361 (399)
.. ...-...+..++..+..++..+...+..++..||.......+...+ ..++.+.+.+. ..+..-+.++.+++.++.
T Consensus 641 ~i-~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 641 LI-SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HH-HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 11 1122334566666677777788888899999998765433444445 56677777775 456777889999999999
Q ss_pred ccCC
Q 015851 362 QVIT 365 (399)
Q Consensus 362 ~~~~ 365 (399)
....
T Consensus 719 s~~~ 722 (2341)
T KOG0891|consen 719 SSTG 722 (2341)
T ss_pred cccc
Confidence 8766
No 296
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=72.03 E-value=70 Score=28.23 Aligned_cols=212 Identities=10% Similarity=0.064 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
.+|..|+..|+.+. .-|... ....-+..|+.+..+.-++. .....++..+..|.......... ....+
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~------~~~~~~l~gl~~L~~~~~~~~~~--~~~i~ 82 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDH------ACVQPALKGLLALVKMKNFSPES--AVKIL 82 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccH------hhHHHHHHHHHHHHhCcCCChhh--HHHHH
Confidence 78889999999877 333221 12223566666654433222 34444566666666322211111 11222
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
..+.+-.. .-....|..+...+..+.....+.... ...+++..+++.++. .||.-...+...+..+....+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~----- 156 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD----- 156 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-----
Confidence 23332222 223567888888888888743333221 223567788888875 478777777777776654322
Q ss_pred HHHCCCcHHHHHhhc-------CC---Ch-HH-HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHH
Q 015851 287 VLAAGALQPVIGLLS-------SC---CS-ES-QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~-------~~---~~-~v-~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~ 354 (399)
+ ....+.+.+.+. .+ ++ .+ ++.-...|.++....+. ...-++|.|++-|.++.+.++..+.
T Consensus 157 -~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 157 -I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred -c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 1 233444444432 11 11 22 33333455555433222 2334688999999999999999999
Q ss_pred HHHHHhhccCCC
Q 015851 355 FALGRLAQVITV 366 (399)
Q Consensus 355 ~~L~~l~~~~~~ 366 (399)
.+|..++..-+.
T Consensus 230 ~tL~~c~~~y~~ 241 (262)
T PF14500_consen 230 QTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHCCH
Confidence 999998876664
No 297
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=71.87 E-value=56 Score=27.08 Aligned_cols=148 Identities=15% Similarity=0.136 Sum_probs=89.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
..++.++++..+++..++..|+..+.-+....-.+ -...+|.++.+..++++.++..|...+..+....+.....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34677888889999999999999999888631111 1136899999999999999999999999997544433322
Q ss_pred HHHCCCcHHHHHhhc---CCChH-H---HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--------CCHHHHH
Q 015851 287 VLAAGALQPVIGLLS---SCCSE-S---QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--------PDVQLRE 351 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~---~~~~~-v---~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--------~~~~v~~ 351 (399)
-... ++..-..+-. ..... . ......-+..+...+...++.++. .|++.+.. ..+.-..
T Consensus 83 ~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHH
Confidence 2222 2333333321 11111 1 334445566666555556665544 34444432 1334455
Q ss_pred HHHHHHHHhhccCC
Q 015851 352 MSAFALGRLAQVIT 365 (399)
Q Consensus 352 ~a~~~L~~l~~~~~ 365 (399)
....+..|||.-+-
T Consensus 157 ~~~Fla~nLA~l~y 170 (187)
T PF12830_consen 157 FLLFLAENLATLPY 170 (187)
T ss_pred HHHHHHHHHhcCCC
Confidence 56666667775443
No 298
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.67 E-value=21 Score=27.78 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=57.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhc
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 278 (399)
.++..|..-|.++++.++..|+..|-.+... .+....++.+.+++..|.+++... .+.|+..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3466788889999999999999999999874 345667777888999999998864 33489999888887763
No 299
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=71.25 E-value=96 Score=29.48 Aligned_cols=135 Identities=12% Similarity=0.061 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
.....++......++.....+ +..++..--..++.=....+.-+..+....+...-.-+....+..+..++++++
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344444444444444332211 233343333344444445555566665533322222222336778888899999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHCC---CcHHHHHhhc-----CCChHHHHHHHHHHHHhhccChhhHHH
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVH 328 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~ 328 (399)
-.|.+.|+....| +.. ..++... +++.+...|. +-+..++..|..++..+...+++....
T Consensus 311 ~qVAErAl~~w~n-----~~~-~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 311 FQVAERALYFWNN-----EYF-LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHGGGGS-----HHH-HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHCC-----HHH-HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9998888765432 221 1222221 4566665553 335689999999999888766654443
No 300
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.01 E-value=18 Score=28.07 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=55.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhcCCCh--HHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~~L~~l~~ 320 (399)
++..|.+-|.++++.++..|+..|-.+..+. ......+.+.+++..|..++..... .++..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4566888888999999999999999998653 4455677788899999999875432 388888888887764
No 301
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=70.82 E-value=60 Score=26.93 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=84.6
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (399)
.++.++++..+.+. .++..++.++..+....= +--...+|.++.+..++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~--------~vr~~Al~~l~~il~qGL-----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDD--------SVRLAALQVLELILRQGL-----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcCC-----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 45666665555555 788888888877774221 11124689999999999999999999999999876
Q ss_pred ChhhHHHHHhcCCHHHHHH---hhcCCCH-HH---HHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC-------
Q 015851 238 NDENKNQIVECNALPTLIL---MLRSEDS-AI---HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------- 303 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~---ll~~~~~-~v---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------- 303 (399)
++.....-...| +..-.. .+..+.. .. ....+.-+..+..++...+.. ++..+++.+...
T Consensus 76 ~~s~v~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~ 149 (187)
T PF12830_consen 76 HESLVESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSE 149 (187)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccc
Confidence 655443333332 222211 1222111 11 444555666666544444443 356666666532
Q ss_pred -ChHHHHHHHHHHHHhhcc
Q 015851 304 -CSESQREAALLLGQFAAT 321 (399)
Q Consensus 304 -~~~v~~~a~~~L~~l~~~ 321 (399)
.+.-.....++..|++.-
T Consensus 150 ~~~~~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 150 SSPSDLDFLLFLAENLATL 168 (187)
T ss_pred cchhHHHHHHHHHHHHhcC
Confidence 234445566666666643
No 302
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.06 E-value=1.2e+02 Score=30.29 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHH---hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc--CCHHHH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVR---MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTL 254 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~~~~L 254 (399)
+++..++.+|..+..+.......+. ...++..++..+. .++..+-.++++|.|+-. ++.+.+.+... ..+..+
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPV 636 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhh
Confidence 4455566666666654443322222 1223444444444 557788899999999998 46666655543 111222
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc---CC--ChHHHHHHHHHHHHhhccChhhHHHH
Q 015851 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SC--CSESQREAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~--~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (399)
...=..++..++........|.+.. ..+.-.+.+..+.+...+. .+ +.+..-..+.+|++++.. +.....+
T Consensus 637 ~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~-~~~~~~~ 712 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV-DASVIQL 712 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc-cHHHHHH
Confidence 2221223445555444444444321 1111111344555554443 22 223344466789999865 4444555
Q ss_pred HhcCCHHHHHHhhC
Q 015851 330 VQRGAVRPLIEMLQ 343 (399)
Q Consensus 330 ~~~g~v~~L~~ll~ 343 (399)
...--+..+.+-++
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 55444555555554
No 303
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=69.80 E-value=76 Score=27.73 Aligned_cols=89 Identities=18% Similarity=0.289 Sum_probs=55.8
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh--HHHHHHHHHHHHhhccChh
Q 015851 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSD 324 (399)
Q Consensus 247 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~ 324 (399)
+..++|.++++++.++..+- ..++......-...-..+-.|-++.|..++.+++. -+|..|+.+|..++..++.
T Consensus 71 e~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 34679999999986654211 12223221111122233345667888888876654 6788899999999988888
Q ss_pred hHHHHHhcCCHHHHHHh
Q 015851 325 CKVHIVQRGAVRPLIEM 341 (399)
Q Consensus 325 ~~~~l~~~g~v~~L~~l 341 (399)
.|..+++. +..++..
T Consensus 147 ~Re~vi~~--f~~ll~~ 161 (249)
T PF06685_consen 147 SREEVIQY--FRELLNY 161 (249)
T ss_pred CHHHHHHH--HHHHHHH
Confidence 88887775 4444443
No 304
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=69.21 E-value=74 Score=27.36 Aligned_cols=131 Identities=20% Similarity=0.149 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC-------------H-----HHHHHHHHHHHHhhcCCh
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-------------S-----AIHYEAVGVIGNLVHSSP 281 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~-------------~-----~v~~~a~~~L~~l~~~~~ 281 (399)
+......+|..+..|.. .+++.....+.+.++.+...|..-+ + .+...=...||.++. ++
T Consensus 77 ~~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred chHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 36667778888888887 5787777778888888888775321 1 122223346788875 47
Q ss_pred hHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 282 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
.+...+-+.++...+.++....+. ..-....|.++=-..+...+ ..|-+.|.+++..+|..|..-|+.+.
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 777888889999999999886543 11122244454221122222 24556788889999999999998876
Q ss_pred c
Q 015851 362 Q 362 (399)
Q Consensus 362 ~ 362 (399)
+
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 4
No 305
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=68.97 E-value=7.3 Score=28.85 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 015851 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (399)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 267 (399)
....+..+..|+. .|+....+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4556778888887 789999999999999999999998876543
No 306
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.58 E-value=76 Score=32.84 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHH-HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh--hhHHHHHhcCC-----
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGA----- 334 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~g~----- 334 (399)
..+......+|..++..+++....+. +.+....++.++-+++.++...|...|......+. +..+.+.+...
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ 574 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLS 574 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHH
Confidence 46677788899999977776666655 46889999999999999999999999999874321 34444444322
Q ss_pred --HHHHHHhhC----CCCHHHHHHHHHHHHHhhccC
Q 015851 335 --VRPLIEMLQ----SPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 335 --v~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~ 364 (399)
...|..+.+ .+-+.+.+....+|..||...
T Consensus 575 ai~~~l~~~~~~~~~~p~pr~vr~~~DIi~~Lcdp~ 610 (727)
T PF12726_consen 575 AINWSLRQLTKLKFFEPCPRMVRCLMDIIEVLCDPV 610 (727)
T ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHcCCC
Confidence 222333332 234556666666666666543
No 307
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=68.24 E-value=78 Score=27.24 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccC-CCcchH-----HHHHHHHHHHHHhcCChhh
Q 015851 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRN-LKPFEH-----EVEKGSAFALGLLAVKPEH 149 (399)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~-~~~~~~-----~~~~~a~~~L~~l~~~~~~ 149 (399)
+...-.-++..+..+...++....+.+.+.++-+.+.|...++...... ..-|.+ .+-..=...++.++.++..
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 3455566778888888888888888899999999998876633211111 112221 2233344678889999999
Q ss_pred HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHH
Q 015851 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (399)
Q Consensus 150 ~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 229 (399)
.+.+-+.++...+.++....+.+ ++... ++.+|-...+.... ..|-..|.+++..+|..|..
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~~-------~l~kl---il~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~ 218 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSRD-------DLLKL---ILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATK 218 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCchH-------HHHHH---HHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999876442 44433 44444322221111 12456688899999999999
Q ss_pred HHHHhhc
Q 015851 230 ALRTLAF 236 (399)
Q Consensus 230 ~L~~L~~ 236 (399)
.|+.+..
T Consensus 219 ~L~~llr 225 (226)
T PF14666_consen 219 HLRVLLR 225 (226)
T ss_pred HHHHHhc
Confidence 9988764
No 308
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=68.23 E-value=65 Score=32.86 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccCh
Q 015851 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
.+..|..++..|+.+....+.....+.+...++.|+..|. ..+..+...|+.+|..+.-.-+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 4577888999999999888888899999999999999997 4566777788888888874433
No 309
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.96 E-value=94 Score=35.20 Aligned_cols=151 Identities=22% Similarity=0.147 Sum_probs=73.9
Q ss_pred ChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHH------Hhh
Q 015851 208 GIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---DSAIHYEAVGVIG------NLV 277 (399)
Q Consensus 208 ~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~------~l~ 277 (399)
.+..+..+..+++ |.+++.++.++..+...........++. .+..+..++-+. +.++...--+++. ++.
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ali 1037 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALI 1037 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHH
Confidence 3556677766655 6999999999998886333322222222 333344444332 2233322222222 211
Q ss_pred c-------CChh-HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHH
Q 015851 278 H-------SSPN-IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (399)
Q Consensus 278 ~-------~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v 349 (399)
. .+.. ....-.....+-...-++.++++.++.++..++.++-...+. .+--.-+|+.|+.++.+...-.
T Consensus 1038 ttlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr---~~n~~~lV~~L~~~l~s~~~i~ 1114 (2067)
T KOG1822|consen 1038 TTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR---HVNLDSLVLQLCSLLSSSYLIL 1114 (2067)
T ss_pred HhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch---hccHHHHHHHHHHHhcchhhhh
Confidence 1 1110 000111111122222234456778888899998888654432 2222334666777666555445
Q ss_pred HHHHHHHHHHhhc
Q 015851 350 REMSAFALGRLAQ 362 (399)
Q Consensus 350 ~~~a~~~L~~l~~ 362 (399)
|.....+++.+..
T Consensus 1115 r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1115 RRASFSCLRQLVQ 1127 (2067)
T ss_pred hhhHHhhhhHHhH
Confidence 5555555555543
No 310
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=67.13 E-value=89 Score=36.65 Aligned_cols=200 Identities=17% Similarity=0.105 Sum_probs=104.6
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (399)
+.+..+...+....- .++..+...+++++..++...........+..+-++-.+....+......-+..+..
T Consensus 565 ~~lr~~~~al~~~~l--------~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENF--------AIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII 636 (2341)
T ss_pred hhHHHHHHHhhhhhh--------hhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence 344444444444433 677888888888886665322111111222222222222222222222222222222
Q ss_pred CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHH
Q 015851 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLL 315 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L 315 (399)
..+......++ ..+..++..+.+.+..+...+..+++.|+.....-.....+ ..++.+.+.+.. .+..-+..+.+++
T Consensus 637 ~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l 714 (2341)
T KOG0891|consen 637 SSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKAL 714 (2341)
T ss_pred HHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHh
Confidence 22222222222 24566777777888888899999999998654322222333 455666666653 4446677788999
Q ss_pred HHhhccChhhHH-HHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCCC
Q 015851 316 GQFAATDSDCKV-HIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 316 ~~l~~~~~~~~~-~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++.+...-... .....-++..+...+.. ...-++..+...++++....+.
T Consensus 715 ~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 715 GQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred hhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 999864322211 12223344455555543 3555777888888866655553
No 311
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=65.55 E-value=39 Score=31.02 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~--~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 201 (399)
.+|..|..++..+...+.....+...+ ++..|++++..+..-+. +++..|+.+|..++.+......
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~-----~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPM-----DIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHHHhccccHHH
Confidence 456667777777777777888887777 99999999987764332 8999999999999976655544
No 312
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.92 E-value=1.2e+02 Score=33.33 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=31.8
Q ss_pred HHHHHHHhhccChhhHHHHHhc-CCH---HHHHH----hhCCCCHHHHHHHHHHHHHhh
Q 015851 311 AALLLGQFAATDSDCKVHIVQR-GAV---RPLIE----MLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~-g~v---~~L~~----ll~~~~~~v~~~a~~~L~~l~ 361 (399)
.+.+|+.++.-.+++++.+... |+. +.+++ +..+.++++.-.|..++..+.
T Consensus 1073 ~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1073 SCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 5566777765556777766653 222 33333 334678888888887777655
No 313
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=64.04 E-value=7.5 Score=20.55 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHh
Q 015851 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (399)
Q Consensus 132 ~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~ 167 (399)
+|..|+++|+.+... .+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd~----------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHhc
Confidence 577899999999852 25677776664
No 314
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=63.98 E-value=1.2e+02 Score=27.87 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHH
Q 015851 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPP 211 (399)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~ 211 (399)
|.....+|..+... . ....++..+..++.++..+ ......+.++..=+..- .. ....++..
T Consensus 4 r~~~~~~L~~l~~~-~-----~s~~i~~~l~~~~~KE~nE-------~aL~~~l~al~~~~~~~~~~-----~~~~~~~~ 65 (339)
T PF12074_consen 4 RVLHASMLSSLPSS-S-----LSSKIVQGLSPLLSKESNE-------AALSALLSALFKHLFFLSSE-----LPKKVVDA 65 (339)
T ss_pred HHHHHHHHHhCCCc-c-----hHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHHHHHhCcC-----CCHHHHHH
Confidence 34455666666541 1 2233667777888776553 33444444433322111 11 11234555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCCHHHHHHhhcC----CCHHH----HHHHHHHHHHhhcCChh
Q 015851 212 LVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS----EDSAI----HYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~~L~~ll~~----~~~~v----~~~a~~~L~~l~~~~~~ 282 (399)
+..=+.+..+.+|+.-+..++.+..... .....+.. .++|.|+..++. +-+.. ...|...+. +......
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~ 143 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLD 143 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccch
Confidence 6666777777799888888888875111 11122222 366777776642 22211 112222222 2110000
Q ss_pred HHHH------HHHCCCcHHHH---HhhcC-CChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHhhCCC--CHHH
Q 015851 283 IKKE------VLAAGALQPVI---GLLSS-CCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSP--DVQL 349 (399)
Q Consensus 283 ~~~~------~~~~~~l~~L~---~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~~--~~~v 349 (399)
.... .+..+-=+.++ ++.+. .+.+.....+.++..+...... ..... ....-..++.++.++ .+.+
T Consensus 144 ~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~v 222 (339)
T PF12074_consen 144 KIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKV 222 (339)
T ss_pred hhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHH
Confidence 0000 00000000100 12222 3344445555555555432111 11111 122345677777666 8899
Q ss_pred HHHHHHHHHHhhccCCC
Q 015851 350 REMSAFALGRLAQVITV 366 (399)
Q Consensus 350 ~~~a~~~L~~l~~~~~~ 366 (399)
|+.|..++..+....+.
T Consensus 223 R~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 223 RRAALSALKKLYASNPE 239 (339)
T ss_pred HHHHHHHHHHHHHhChH
Confidence 99999999988877764
No 315
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=63.36 E-value=66 Score=31.53 Aligned_cols=172 Identities=19% Similarity=0.088 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 248 (399)
++...+-..|..+...-+ +..++..|..+.. -.++.++...+..|..-.. ..-...
T Consensus 252 ~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~~~~ 318 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AATSFP 318 (501)
T ss_pred hHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHhCCc
Confidence 676777777777764311 2233444555544 1346677766665543211 000112
Q ss_pred CCHHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCChhHH----HHHHHCCCcHHHHH----hhcCCChHHHHHHHHHH
Q 015851 249 NALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSPNIK----KEVLAAGALQPVIG----LLSSCCSESQREAALLL 315 (399)
Q Consensus 249 ~~~~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~~~----~~~~~~~~l~~L~~----lL~~~~~~v~~~a~~~L 315 (399)
.++..+..-+.++ +..++..++..+ ........... ...+..++.+.+-. --...+...|..+..+|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 2334444444444 556766666666 44443222222 22233444444410 01134557888899999
Q ss_pred HHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 316 ~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+.++...+... .-+.+.+..|.+-+.+++++++.....||..++..-..
T Consensus 399 G~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 399 GLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 99997765432 12456678888888888999999999999998865553
No 316
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=62.77 E-value=41 Score=26.17 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (399)
-++...+.++..++..+ |.. -...++.++.++.+ ++......+.+|..+..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~e 54 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQS-SPQHLELVLRILRILPE 54 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHH
Confidence 45667777777777533 111 13456777777777 46666666666666664
No 317
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=62.38 E-value=89 Score=25.83 Aligned_cols=81 Identities=22% Similarity=0.155 Sum_probs=51.7
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (399)
.++.+++-|..... .....|...+..|.......+-.-.-...+..+-..|.+.++++...++.+|..|...
T Consensus 39 ~Lpif~dGL~Et~~--------Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 39 YLPIFFDGLRETEH--------PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHhhhhccCc--------cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 55666666665544 4445566666666644222223333456777888889999999999999999999654
Q ss_pred ChhhHHHHH
Q 015851 238 NDENKNQIV 246 (399)
Q Consensus 238 ~~~~~~~~~ 246 (399)
.+..-..++
T Consensus 111 ~~~vG~aLv 119 (183)
T PF10274_consen 111 SDMVGEALV 119 (183)
T ss_pred hhhhhHHHH
Confidence 343333333
No 318
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=60.76 E-value=1.4e+02 Score=27.45 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhHHHHHHHC-CC-cHHHHHhhcCC-----C--------hHHHHHHHH-
Q 015851 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA-GA-LQPVIGLLSSC-----C--------SESQREAAL- 313 (399)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~~-l~~L~~lL~~~-----~--------~~v~~~a~~- 313 (399)
++.+.+.|.+....+...++..|..++. ........+... ++ .+.+.+++... . +.+|...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888889999999999997 554555666543 22 34455555321 1 277878775
Q ss_pred HHHHhhccChhhHHHHHh-cCCHHHHHHhhCCCCHHHHHHHHHHHHH-hhccC
Q 015851 314 LLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGR-LAQVI 364 (399)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~-~g~v~~L~~ll~~~~~~v~~~a~~~L~~-l~~~~ 364 (399)
+|+.+...++..++.+.+ .+.+..+.+-+...++++......+|.. +..+.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~ 190 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS 190 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC
Confidence 455555455666666665 6778888898988889999999999985 44333
No 319
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=60.61 E-value=39 Score=31.00 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHhCC--ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851 78 AAAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (399)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~ 151 (399)
.+|..|+.++..+..++.....++..+ ++.-|+++++.++. +.. ++|..|..+|.-++ ..+...+
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~-v~~--------~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK-VPM--------DIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC-CCH--------HHHHHHHHHHHHHHhccccHHH
Confidence 356666666766666778888888877 99999999987663 222 89999999999999 4444444
No 320
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.25 E-value=1.2e+02 Score=26.74 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HcCChhHHHHHHhCCChHHHHhcccCCC----CcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH
Q 015851 90 LAKNEEVVNWIVEGGAVPALVKHLQAPP----TSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNL 165 (399)
Q Consensus 90 l~~~~~~~~~~~~~g~l~~L~~lL~~~~----~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~ 165 (399)
+.++.+.|-.+.-.+.+|.++.-++++. . .--..++..|+.+| +....+.|.+.
T Consensus 97 lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~------------~~~~~~A~~La~~a----------~~~~~~~La~i 154 (262)
T PF14225_consen 97 LIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPD------------QECIEIAEALAQVA----------EAQGLPNLARI 154 (262)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHhccccccccc------------HHHHHHHHHHHHHH----------HhCCCccHHHH
Q ss_pred HhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHH
Q 015851 166 LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI 245 (399)
Q Consensus 166 L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 245 (399)
+.......- ++..+....++..|..-..-+-.... +..++.+|.++.+-++...+..|..+..+.+-.+.
T Consensus 155 l~~ya~~~f-r~~~dfl~~v~~~l~~~f~P~~~~~~-------l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-- 224 (262)
T PF14225_consen 155 LSSYAKGRF-RDKDDFLSQVVSYLREAFFPDHEFQI-------LTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-- 224 (262)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHhCchhHHHH-------HHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (399)
...+.+..+.++++.+.-.-.-..+..+..++.+
T Consensus 225 ~~~dlispllrlL~t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 225 HGADLISPLLRLLQTDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred cchHHHHHHHHHhCCccHHHHHHHHHHHHhhccc
No 321
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.69 E-value=2.9e+02 Score=31.75 Aligned_cols=189 Identities=16% Similarity=0.092 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHH------HHHHHHhhcCch--h
Q 015851 130 HEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA------DAITNLAHENSS--I 199 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~------~~L~~l~~~~~~--~ 199 (399)
..+...+....+.+. .++..+..+.+. ++..+.-.+..... .++..+. .++.+++...-. .
T Consensus 798 ls~Idta~~lfg~vfp~v~~k~~~~ile~--~~esi~~sk~~r~q-------sV~~~a~t~~al~s~lk~l~e~~~~~~l 868 (2067)
T KOG1822|consen 798 LSLIDTAVSLFGSVFPHVNNKIRLSILEH--FPESIKQSKSARQQ-------SVQVNAVTWQALLSALKYLAEFKGATSL 868 (2067)
T ss_pred hHHHHHHHHHHHHhccCccHHHHHHHHHH--HHHHhhhhccchhH-------HHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 356667778888887 445555555542 33333333333111 3333333 345555532221 1
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 015851 200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 200 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 278 (399)
-...+..-.+..++..+...++..+..+..+++.++...++ ..++. +..+.+..-+. ..++-.|..-.-+++.+-.
T Consensus 869 g~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhk 945 (2067)
T KOG1822|consen 869 GPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHK 945 (2067)
T ss_pred CHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 11122223344566677788999999999999999973222 12221 12333443343 3455555444444544432
Q ss_pred CChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChhhHHHHH
Q 015851 279 SSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIV 330 (399)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (399)
........-.-...+..+..+.++ .+|.++..++.++..++.........++
T Consensus 946 yvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v 998 (2067)
T KOG1822|consen 946 YVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV 998 (2067)
T ss_pred hccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH
Confidence 211110000012235566666654 4558999999988888755433333333
No 322
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.90 E-value=1.1e+02 Score=31.67 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=72.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH-
Q 015851 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV- 330 (399)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~- 330 (399)
..+...+.+++..+....+.++.+++.-..-.... ...-++.-..-.+..-..+......+|..++..+++....+.
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 34555556677777777788887776321100000 111222222222222234566677899999988887666655
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 331 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+.+....+..++-+++.++.++|...|+.......
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 58899999999999999999999999999885333
No 323
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=58.20 E-value=37 Score=28.63 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 300 (399)
..+...+...|..++.++.+++..+.+. ++.+...+.......-..+..++..+..++......+.+. .+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 4678899999999999999998888775 4434444333222223456777777776666655554433 488888888
Q ss_pred cCCChHHHHHHHHHHHHhhc
Q 015851 301 SSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~ 320 (399)
...+. ...-...|..++.
T Consensus 152 ~~~gr--~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHGR--QPRYLDFLSSLCV 169 (207)
T ss_dssp --------------------
T ss_pred HHcCC--ChHHHHHHhhhcc
Confidence 76331 1223344555543
No 324
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=57.84 E-value=22 Score=27.92 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=53.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhcCCC-hH---HHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC-SE---SQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~-~~---v~~~a~~~L~~l~~ 320 (399)
++..|.+-|.++++.++..|+.+|-.+..+. +.....+.+..++..|..++.... .. |+..+...|.....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4566888888999999999999999998765 445556666678889999887433 33 78888877777664
No 325
>PRK09169 hypothetical protein; Validated
Probab=55.10 E-value=4.2e+02 Score=31.28 Aligned_cols=19 Identities=16% Similarity=-0.018 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCChhhHH
Q 015851 133 EKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~ 151 (399)
.-+++++|+.....+.++.
T Consensus 291 vAN~LNALSKwp~~~~cr~ 309 (2316)
T PRK09169 291 VANALNALSKWPDTEACRQ 309 (2316)
T ss_pred HHHHHHHHHhCCCchHHHH
Confidence 3355555555555554444
No 326
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.69 E-value=17 Score=33.04 Aligned_cols=64 Identities=8% Similarity=-0.039 Sum_probs=50.8
Q ss_pred HHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH
Q 015851 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (399)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 204 (399)
+..+.+++++ .++++++.+.+.|+++.++.--.-++.++ -+++.+..++.+|..++...+..+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nP------fi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNP------FIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCCh------HHHHHHHHHHHHHHhcchhhHHHHh
Confidence 4677999999 89999999999999988775544333322 7889999999999998888777554
No 327
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=53.57 E-value=55 Score=30.32 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=61.7
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++..+.+-|.+.++.|...|+..+..|.... ...+..+....+...|..++. +..+.|++.....+...+....+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 5788888899999999999999888887653 356677888889999999998 67899999988888888874443
No 328
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=53.13 E-value=20 Score=19.17 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHh
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~ 167 (399)
.+|..|+++|+++.... +++.|++.++
T Consensus 2 ~vR~~aa~aLg~~~~~~----------a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLGDEE----------AVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcCCHh----------HHHHHHHHhc
Confidence 57889999999985321 4555666554
No 329
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=51.88 E-value=54 Score=35.35 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=67.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh-ccChhhHHH
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA-ATDSDCKVH 328 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 328 (399)
..|.+...+.+.+..++..++++++.+........-. -++..++.++...+.-++..++..+..+. ........
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~----~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~- 891 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMA----TVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLV- 891 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccc-
Confidence 3567777778889999999999999997542222111 24555666666555555555554443332 21111111
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 329 l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
-...=++++|+..+.+....+|.+|..+...+-.-
T Consensus 892 ~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 892 PYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred ccceeehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 11123567888888888888999999888877643
No 330
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=51.56 E-value=1.1e+02 Score=23.45 Aligned_cols=71 Identities=8% Similarity=0.122 Sum_probs=47.1
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccChh-hHHHHHh-cCCHHHHHHhhCC--------CCHHHHHHHHHHHHHhh
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQ-RGAVRPLIEMLQS--------PDVQLREMSAFALGRLA 361 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~-~g~v~~L~~ll~~--------~~~~v~~~a~~~L~~l~ 361 (399)
++..|.+-|+..++.|+..++.+|..++..++. .+..+.. ...|..+..+-.. ....||..|-.++..|-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 467788888888899999999999999977653 3444443 2334444444331 23457888877777664
Q ss_pred c
Q 015851 362 Q 362 (399)
Q Consensus 362 ~ 362 (399)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 3
No 331
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=51.11 E-value=2e+02 Score=26.41 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
+++-....++++..+..+.+.....-.....-..++.++-+. ..++|..|+.++..+...++.. +...++..+-
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 445555666777666654332211111223456688888777 8899999999999998765553 3333456666
Q ss_pred Hhhc
Q 015851 298 GLLS 301 (399)
Q Consensus 298 ~lL~ 301 (399)
.++.
T Consensus 251 ~~l~ 254 (339)
T PF12074_consen 251 KWLS 254 (339)
T ss_pred HHHH
Confidence 6654
No 332
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.96 E-value=2.1e+02 Score=26.87 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=74.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (399)
.+.-++..+++.+..++..|+.-|..+...++.....- -..+++.+..+..+.+..+|.....++-++....-......
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 45667888899999999999999988887544433221 23356667777778888899888888887653211111111
Q ss_pred HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
.-.=+++.+...+.+-.+.++.-+...+.-+....+
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 111123333344556677888888888888776543
No 333
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=49.38 E-value=2.6e+02 Score=27.15 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC------CCCHHHHHHHHHHHHHhhccCCC
Q 015851 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 306 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+....+-.++.||+.. ..+.. .+..|+.+|. ..+..+.+.|+..+..+.-..+.
T Consensus 230 ~l~~~~w~~m~nL~~S-~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~ 289 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKS-HLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE 289 (464)
T ss_pred ccchhHHHHHHHHHcC-ccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc
Confidence 5555666688888742 22222 2556777772 24566778889999888877743
No 334
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=48.68 E-value=1.2e+02 Score=23.82 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=55.4
Q ss_pred CcHHHHHhhc-CCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHH-HHHhhCC---CCHHHHHHHHHHHHHhhccCC
Q 015851 292 ALQPVIGLLS-SCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRP-LIEMLQS---PDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 292 ~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~-L~~ll~~---~~~~v~~~a~~~L~~l~~~~~ 365 (399)
++..|.+-|. +.++.+...|+..|-.+.... ......+...+++.. |++++.. .+..|+..+...+...+....
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 4566666666 467888888888877777543 355567777888987 8999863 356899999999999997654
Q ss_pred C
Q 015851 366 V 366 (399)
Q Consensus 366 ~ 366 (399)
+
T Consensus 119 ~ 119 (141)
T cd03565 119 G 119 (141)
T ss_pred C
Confidence 3
No 335
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=48.43 E-value=18 Score=21.55 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (399)
Q Consensus 189 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (399)
|..+...++.. +....+...+...+.++++.+|..|..+|
T Consensus 3 l~~iv~~dp~l---l~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTL---LDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccc---cchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44555444432 22334566777788899999999887653
No 336
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.58 E-value=1.7e+02 Score=32.18 Aligned_cols=164 Identities=19% Similarity=0.210 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc----CC---CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 252 (399)
+++...+.++.++....-+ ..+ ++ -+.+.++++ .. ...+.+.+..+|.-++.+.-.....-+=.+.+.
T Consensus 857 evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 6667777777777742221 111 22 333333332 22 346777777778777763222111112233455
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHH----HCCCcHHHHHhhcCCChHHHHHHHHH--HHHhhccChhh
Q 015851 253 TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVL----AAGALQPVIGLLSSCCSESQREAALL--LGQFAATDSDC 325 (399)
Q Consensus 253 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~L~~lL~~~~~~v~~~a~~~--L~~l~~~~~~~ 325 (399)
.+...-.. .|..+.-.|++.+|++...-.......- .+..+..+.. ..+...+--+++|. +.+++... +.
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~-~d 1008 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLC-ED 1008 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHh-cc
Confidence 55554443 5667888888888888632111011111 1223333333 23334555566663 22333221 22
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHH
Q 015851 326 KVHIVQRGAVRPLIEMLQSPDVQLRE 351 (399)
Q Consensus 326 ~~~l~~~g~v~~L~~ll~~~~~~v~~ 351 (399)
-+.-+..|+++.+.+++.+.......
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCCh
Confidence 23344567777777777654444433
No 337
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.35 E-value=2.5e+02 Score=28.86 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.+++.|..+...+=+.++..++.++.+|...-|+....+ +..|++-+.+++..+...|...|-+|....|+
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 356666666666667999999999999987767665544 45677888888899999999999988888887
No 338
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=47.22 E-value=4.1e+02 Score=30.84 Aligned_cols=180 Identities=11% Similarity=0.058 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhcCchhHH---HHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHH
Q 015851 180 SVIRRAADAITNLAHENSSIKT---RVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~ 255 (399)
++...++..|..++..--...+ .-.+..++..+..++.+ .+.+++...+.++.++...... -+.. +++.+.
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS-GWktIF 1226 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS-GWKSMF 1226 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc-CcHHHH
Confidence 5666677777676642111111 11223456666665554 5589999999999999863221 2233 555555
Q ss_pred Hhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHH--C----CCcHHHHHhhcCC-ChHHHHHHHHHHHHhhccC--
Q 015851 256 LMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--A----GALQPVIGLLSSC-CSESQREAALLLGQFAATD-- 322 (399)
Q Consensus 256 ~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~----~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-- 322 (399)
.++. ++++.+...|-.++..+... ....+.. . ..+..+..+-... +.++-..|...|++++..-
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
Confidence 5554 56778888888888777632 1111110 1 2334444444332 3566677777777652110
Q ss_pred -h------------------------hhHHHH-----HhcCCHHHHHHh---hCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 323 -S------------------------DCKVHI-----VQRGAVRPLIEM---LQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 323 -~------------------------~~~~~l-----~~~g~v~~L~~l---l~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
+ +....+ ....-+|.|..+ ..+..++||..|+..|..+-...+..
T Consensus 1304 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1304 GDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred ccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 0 000000 001223444433 45789999999999998887665543
No 339
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=47.09 E-value=3e+02 Score=30.26 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
.+++.++++|..+..+..... -...+..+..++..++.+++.-.+..+.....-..+....+. ..+++..+.-|.
T Consensus 144 pVre~caq~L~~~l~~~~~s~----~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDESL----IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLE 218 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhHh----hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence 688889999988885433211 123466777777777777766655555443321111111111 235667777888
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhH-HHHHHHCCCcHHHHHhhcCCCh--HHHHHHHHHHHHhhccChhhHH----HHHhc
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKV----HIVQR 332 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~----~l~~~ 332 (399)
+.+..++..|+..+.-++...... .+.+ ..++..+...+..-+. .-.......+..++... +... .-.+.
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~ 295 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEV 295 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhh
Confidence 888999999998887765322111 0111 1123333333321111 00111112233333221 1111 11225
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 333 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
|++|.+...+.+.-..++.++...+..+.+..+.
T Consensus 296 ~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~q 329 (1549)
T KOG0392|consen 296 GLVPRLWPFLRHTISSVRRAALETLAMLLEADDQ 329 (1549)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999988888999999999999887654
No 340
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=46.67 E-value=2.2e+02 Score=25.72 Aligned_cols=134 Identities=10% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHHhcCcHHHHHHHHhccccCc---------------cccccHHHHHHHHHHHHHHhhcCchhH--------------
Q 015851 150 QQLIVDNGALSHLVNLLKRHMDSN---------------CSRAVNSVIRRAADAITNLAHENSSIK-------------- 200 (399)
Q Consensus 150 ~~~i~~~~~i~~L~~~L~~~~~~~---------------~~~~~~~~~~~a~~~L~~l~~~~~~~~-------------- 200 (399)
+..+.+.|.+|.|-++++.-.... .+.+...++.+-++.+.++|.++....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 456778899999888886532110 122445688889999999996442211
Q ss_pred -------HHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChh--hHHHHHhcCCHHHHHHhhcCC---CHHHH
Q 015851 201 -------TRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLRSE---DSAIH 266 (399)
Q Consensus 201 -------~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~~~~L~~ll~~~---~~~v~ 266 (399)
..-...|.+..++..+..+ +...+...+.++-....+.+. -+..+.+.|.++.++..+-++ +.++.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1111345667777776653 466788888999888886555 233466789999999876543 45788
Q ss_pred HHHHHHHHHhhcCChhH
Q 015851 267 YEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 267 ~~a~~~L~~l~~~~~~~ 283 (399)
...-..||.+...+...
T Consensus 162 Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHHHCCCHHH
Confidence 99999999999876554
No 341
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.67 E-value=70 Score=35.01 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=89.9
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
.+++|.|..-|.+++..+|..|...++.+... +...-.=-....+..++.-+.+.+.++|..++....++-.+++....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~-~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD-KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 36778888888889999999999999999873 22211100123456666677788899999999988887766554432
Q ss_pred HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
... ....+- ....++.++.....++..+. . .+..-.+... ++..+...+.+....||..|...|..+-++
T Consensus 337 ~~~---~~~~l~--~~~~D~~~rir~~v~i~~~~-v-~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALR--ERDLDEDVRVRTQVVIVACD-V-MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHH--hhcCChhhhheeeEEEEEee-h-hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 111111 12334444433322222221 1 1111122222 556666667788999999999988877764
No 342
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.57 E-value=37 Score=26.91 Aligned_cols=27 Identities=44% Similarity=0.559 Sum_probs=15.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 335 VRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 335 v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
+++|+.++.+.+..+...|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 566777777667777777777776544
No 343
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.37 E-value=48 Score=34.51 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=62.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAF---KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
+.....+|++++..+|..++.+|..-.- ..++.- .-.-+..+|.++..+..+++-+...|+.++.+++....+...
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~L-lPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLL-LPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhH-hHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455667888889999999888764332 122211 112245789999999999999999999999999876555444
Q ss_pred HHHHCCCcHHHHHhhc
Q 015851 286 EVLAAGALQPVIGLLS 301 (399)
Q Consensus 286 ~~~~~~~l~~L~~lL~ 301 (399)
.=.-..++|.+-.++.
T Consensus 884 sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334556666665554
No 344
>PLN03205 ATR interacting protein; Provisional
Probab=45.57 E-value=2.7e+02 Score=26.24 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=91.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhhHHHHHhcCCHH---HHHHhh-cCCCHHHHHHHHHHHHHhhcCC
Q 015851 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALP---TLILML-RSEDSAIHYEAVGVIGNLVHSS 280 (399)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~~~---~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 280 (399)
.+.+|+.+..-++..+...+++.|..+..+ +....+.-.+.+.+. .+.+.. .+..+.++..|+.++--|...+
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 356778888888888877777777666653 222222233333222 222222 2356678888888777766543
Q ss_pred hh--HHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChhhHHHHH---------------------hcC---
Q 015851 281 PN--IKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIV---------------------QRG--- 333 (399)
Q Consensus 281 ~~--~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~---------------------~~g--- 333 (399)
.. .+..+....++..+-.+|+. ....++++|.-.|.-+.. .+..-..+. ..|
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSs 482 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGK 482 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHHHH
Confidence 32 23445455677788888874 445788887765544432 121111111 111
Q ss_pred CHHHHHHhhC-----CCCHHHHHHHHHHHHHhhccCCCC
Q 015851 334 AVRPLIEMLQ-----SPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 334 ~v~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
++.-|-+++. ..+-++++.++..|.-++..+..+
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~G 521 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSG 521 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCC
Confidence 1223333342 257788999999999999877754
No 345
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=43.63 E-value=22 Score=33.99 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (399)
+-.+..+.++++++.+..++++++.+ .+++.... +...-..++.++..+.+++-+.+..++.-+.
T Consensus 333 lk~~~a~~n~~l~~qa~~~v~~~~~~-~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 333 LKSLCAHKNPELQRQALLAVGNLAFC-LENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHhcccChHHHHHHHHHHHHheec-ccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 34445678899999999999999985 44444433 3445566777887777777777777776664
No 346
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.32 E-value=1.6e+02 Score=23.00 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=58.4
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCC-CCHH---HHHHHHHHHHHhhccCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQ---LREMSAFALGRLAQVIT 365 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~-~~~~---v~~~a~~~L~~l~~~~~ 365 (399)
++..|.+-|.++++.++..|+..|-.+.... +.....+....++..|.+++.+ .... |++.+...|...+....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 4677888888999999999999999888654 3555667777888899998853 3333 89999999999987764
No 347
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=42.51 E-value=64 Score=25.61 Aligned_cols=124 Identities=14% Similarity=0.154 Sum_probs=79.2
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc--CChhHHHHHHHCCCcHHHHHh-hcCCChHHHHHHHH
Q 015851 238 NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH--SSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAAL 313 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~ 313 (399)
+++..+.+++...+..+++++.. ....++...+..++-+.. .++.....+.+.+.+..++.. +.-.+.++...=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 34566778888899999999887 455666666666655543 234445566777888877766 33445566666555
Q ss_pred HHHHhhcc-ChhhHHHHHh--cCCHHHHHHh---hCCCCHHHHHHHHHHHHHhh
Q 015851 314 LLGQFAAT-DSDCKVHIVQ--RGAVRPLIEM---LQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 314 ~L~~l~~~-~~~~~~~l~~--~g~v~~L~~l---l~~~~~~v~~~a~~~L~~l~ 361 (399)
.|-.++-. +++....+.. .+-.|.+... ..+++..+|.++...+-++.
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 56666533 3344444443 3456666554 46788888888877776664
No 348
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=42.40 E-value=36 Score=32.65 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=47.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
.+-.+..+.+++++..|..++++++.+....+..+-+...-..+++++..+.+++-+.++.++..+-
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3444445678999999999999999875444322223334456777777788888888888887765
No 349
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=42.18 E-value=2.6e+02 Score=25.27 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=91.4
Q ss_pred HHHHhCCChHHHHhcccCCCCcccc---cC--------CCcchHHHHHHHHHHHHHhcCChhhHHH--------------
Q 015851 98 NWIVEGGAVPALVKHLQAPPTSEAD---RN--------LKPFEHEVEKGSAFALGLLAVKPEHQQL-------------- 152 (399)
Q Consensus 98 ~~~~~~g~l~~L~~lL~~~~~~~~~---~~--------~~~~~~~~~~~a~~~L~~l~~~~~~~~~-------------- 152 (399)
..+.+.|+||.|-++++.-...... +. .-.-+..++.+-++.+.++++...+...
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 4677889999988877643221110 00 0111236889999999999963322211
Q ss_pred --------HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch--hHHHHHhcCChHHHHHhhcCC---
Q 015851 153 --------IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVELLEFT--- 219 (399)
Q Consensus 153 --------i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~~--- 219 (399)
--+.|.+..+++.+..+..+. ..+-..+.++-...+..+. -+..+...|.++.++..+-++
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s------~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~ 156 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDS------SYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCM 156 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccc
Confidence 113467777888887665443 5667777788888865554 344566779999998876654
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHH
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKN 243 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~ 243 (399)
+..+.....-.|+.|...+.....
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHH
Confidence 356889999999999987665433
No 350
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=41.99 E-value=1.5e+02 Score=22.87 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=41.4
Q ss_pred hhhhhHHHHhhhhhcchhhh--HHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCC
Q 015851 57 SEVSAQVNVLNTTFSWLEAD--RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPP 117 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~ 117 (399)
...+.+++.+...+...... ......++.++......... ..+...+.++.+.++|.++.
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~-~~i~~~~~l~~~~~~l~~~~ 139 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI-ELIINSNLLNLIFQLLQSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H-HHHHSSSHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH-HHhccHHHHHHHHHHcCCHH
Confidence 44667777777777533221 67888999999998884222 34556789999999996543
No 351
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.65 E-value=97 Score=23.33 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=48.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (399)
+++.|+.-|.+++++|...|..+|...+... .....++... |. +..|. ..+...+..+.+ .+.+.+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~~--p~-l~~L~-------~~g~~Ll~~~lS-~~~Gf~~L 76 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSLR--PS-LDHLG-------DIGSPLLLRFLS-TPSGFRYL 76 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHcC--cH-HHHHH-------HcCHHHHHHHHc-chHHHHHh
Confidence 5788999999999999999999999998654 4444444322 11 22221 112223444443 35555555
Q ss_pred HhcCCHHHHHHhh
Q 015851 330 VQRGAVRPLIEML 342 (399)
Q Consensus 330 ~~~g~v~~L~~ll 342 (399)
.+.|.+..-++--
T Consensus 77 ~~~~~v~~El~~W 89 (115)
T PF14663_consen 77 NEIGYVEKELDKW 89 (115)
T ss_pred cchhHHHHHHHHH
Confidence 5555555444433
No 352
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.38 E-value=85 Score=29.01 Aligned_cols=125 Identities=11% Similarity=-0.004 Sum_probs=68.8
Q ss_pred ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCcc--ccccHHHH
Q 015851 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNC--SRAVNSVI 182 (399)
Q Consensus 105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~--~~~~~~~~ 182 (399)
.+|.++.++...-.... .+ +-.......++...|..++...-...-...++.++.++-...-... ..+.|.++
T Consensus 211 LlPyf~~fI~~~v~~n~----~~-nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LR 285 (343)
T cd08050 211 LLPYFVRFIAEGVTVNL----DQ-NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALR 285 (343)
T ss_pred hhhHHHHHHHHHHHhhh----cc-cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHH
Confidence 56777777654311000 00 1245566777777777777654433333378888877754332211 34567999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHhh
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLA 235 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~L~ 235 (399)
..++..|..++......... ....++..+.+.+.++. ...+.-|+..|..+.
T Consensus 286 d~AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 286 DYAARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 99999999999533221111 12233445555555443 333666666665553
No 353
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=2.4e+02 Score=26.40 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=80.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 329 (399)
.+.-|+..+.+.+.++|..|+.-|..+..+.+.... .--..+++.+..++...+..+|......+-++...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 355677788889999999999998887654333321 1223467777788878888888888877777553221111111
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSV 368 (399)
Q Consensus 330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (399)
.-.=+++.+...|.+-.+++|..+...|..+...-++.+
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 111234566666677899999999999999998887653
No 354
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=41.02 E-value=82 Score=22.25 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=41.3
Q ss_pred hcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHH
Q 015851 205 MEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIG 274 (399)
Q Consensus 205 ~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~ 274 (399)
+..++.++..++.+ .+.++|...+.++.++..... .-+.+ +.+.+...+. ++++.+...|-.++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456667777544 578999999999999997322 22344 3555555553 456667666665543
No 355
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=40.78 E-value=1.9e+02 Score=23.26 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=50.9
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHH-hhcCCC--HHHHHHHHHHHHHhhcC
Q 015851 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSED--SAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~-ll~~~~--~~v~~~a~~~L~~l~~~ 279 (399)
+......+.+...+.++++.+...+++++..+.......-+.-.+ -+++.++. ++.++. ..-+..++.++..++..
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 445567788888888878999999999999999632222111111 23444444 666543 46778899999999864
No 356
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=39.76 E-value=3.4e+02 Score=27.16 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHh
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILM 257 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~~l 257 (399)
.++..+...|+--+..-| ..+..-.++...-+.|.+.+..+|.....++..|+.+.+.. ..+.+ ..+-..++.+
T Consensus 290 ~IRv~c~~~L~dwi~lvP---~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~-d~ir~f~eRFk~rILE~ 365 (740)
T COG5537 290 VIRVLCSMSLRDWIGLVP---DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT-DAIRRFVERFKDRILEF 365 (740)
T ss_pred HHHHHHHHHHHHHHhcch---HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH
Confidence 455555555555554434 24455557788888899999999999999999999854433 22222 2345556666
Q ss_pred hcCCCHHHHHHHHHHHHHhh
Q 015851 258 LRSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 258 l~~~~~~v~~~a~~~L~~l~ 277 (399)
+..+..-||..+...+..+.
T Consensus 366 ~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 366 LRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HhhccchhhHHHHHHHHHHH
Confidence 66655558888887777664
No 357
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.40 E-value=48 Score=26.27 Aligned_cols=27 Identities=41% Similarity=0.352 Sum_probs=14.0
Q ss_pred cHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 293 LQPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
+.+|+.+|.+.+..+...|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 556666666666666666666666544
No 358
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=37.82 E-value=2e+02 Score=22.59 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=53.2
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHH-HHHhhcC---CChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQP-VIGLLSS---CCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~-L~~lL~~---~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-|.+ .++.++..|+..|-.++.+. ......+...+++.. |+.++.. .+..++..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45567776664 68889999999998888654 345567777889997 9999863 345888888888887764
No 359
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=37.72 E-value=2.7e+02 Score=27.18 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=51.6
Q ss_pred hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC-------------hhhHHHHHhcCCHHHHHHhhcC-CCH
Q 015851 199 IKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKN-------------DENKNQIVECNALPTLILMLRS-EDS 263 (399)
Q Consensus 199 ~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~-------------~~~~~~~~~~~~~~~L~~ll~~-~~~ 263 (399)
..+.+...++|+.|+.+|.. .++.++..|+.+|..|..-. ......+.....+..|+..+-. ...
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~ 133 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGG 133 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCc
Confidence 33445567999999999974 45789999998888776411 2234455566677777765442 335
Q ss_pred HHHHHHHHHHHHhhc
Q 015851 264 AIHYEAVGVIGNLVH 278 (399)
Q Consensus 264 ~v~~~a~~~L~~l~~ 278 (399)
.....++.++..+.+
T Consensus 134 s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 134 SSLVNGVSILIELIR 148 (475)
T ss_pred chHHHHHHHHHHHHH
Confidence 556666666666653
No 360
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=37.33 E-value=1.4e+02 Score=27.91 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=57.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 320 (399)
++..+.+-|++.++.|...|+..+..++.+. ...+..+....+...|..++. +..+.+++....++.+++.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999988644 345666777888999999998 6777888888778877774
No 361
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=36.78 E-value=1.3e+02 Score=22.65 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=27.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 334 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
+++.|+.-+.+++++|...|..+|...+...
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 4678888888999999999999999999877
No 362
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.99 E-value=6.6e+02 Score=28.03 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=55.4
Q ss_pred CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 290 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.+++|.|...|.+.+..+|..|...++.+... +...-.=-........+.-+.+.+..||.+++....++-.+.+.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~-~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD-KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 36888899999999999999999999999853 32221101234455666666788899999888888877766554
No 363
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=1.5e+02 Score=31.26 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=60.5
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh--cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (399)
++..-.++|.+.+- .++..++.+|..... ......-.-..+...|.++..+...++-+...|+.++.+++
T Consensus 804 Il~r~~~~LS~e~l--------~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESL--------RIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHhcchhH--------HHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 44445555555544 666667766655442 11111112233566788999999999999999999999999
Q ss_pred cCChhhHHHHHhcCCHHHHHHhhcC
Q 015851 236 FKNDENKNQIVECNALPTLILMLRS 260 (399)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (399)
....+....-.-..++|.+-.++.+
T Consensus 876 ~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 876 KYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8666654433333477777766543
No 364
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.44 E-value=1.9e+02 Score=30.94 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHH--HHhcCCHHHHHHh
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ--IVECNALPTLILM 257 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~--~~~~~~~~~L~~l 257 (399)
+++..++..|+.-....| ..+.....+..+-+.|.+.+..||..++.+|-.|... ++.... .....+=..++.+
T Consensus 302 ~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~-~~~~~~L~lFtsRFK~RIVeM 377 (1048)
T KOG2011|consen 302 DIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK-DEDKDKLELFTSRFKDRIVEM 377 (1048)
T ss_pred HHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHH
Confidence 566666666666555444 3567777888999999999999999999999999984 333222 2223455567777
Q ss_pred h-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851 258 L-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (399)
Q Consensus 258 l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 317 (399)
. .+-+..|+...+..+..... + .++...-+..+.+++-..++.++..|...+..
T Consensus 378 adrd~~~~Vrav~L~~~~~~~~--~----g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 378 ADRDRNVSVRAVGLVLCLLLSS--S----GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HhhhcchhHHHHHHHHHHHHhc--c----cccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 6 34456677666555544421 1 12222335566777777777777777765553
No 365
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=33.52 E-value=1.1e+02 Score=24.31 Aligned_cols=123 Identities=13% Similarity=0.212 Sum_probs=80.3
Q ss_pred ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC---ChhhHHHHHhcCcHHHHHHHHhcc
Q 015851 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV---KPEHQQLIVDNGALSHLVNLLKRH 169 (399)
Q Consensus 93 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~i~~~~~i~~L~~~L~~~ 169 (399)
+++.-+.+.+...+..++++++..... .++.+...++.-+-. ++..--.+...+.+..++..--+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~-----------~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~ 83 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSS-----------SVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDF 83 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCh-----------HHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCC
Confidence 366778888999999999999883332 677788888887773 333444556677787777765544
Q ss_pred ccCccccccHHHHHHHHHHHHHHhhc--CchhHHHHHh--cCChHHHHH---hhcCCCHHHHHHHHHHHHHh
Q 015851 170 MDSNCSRAVNSVIRRAADAITNLAHE--NSSIKTRVRM--EGGIPPLVE---LLEFTDTKVQRAAAGALRTL 234 (399)
Q Consensus 170 ~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~--~~~i~~L~~---ll~~~~~~v~~~a~~~L~~L 234 (399)
+++ |+...=...|..++.. ....+ .+.. .+-+|...+ +..+++.-+|.++-...-|+
T Consensus 84 ~~e-------e~l~yYIsfLK~lSlkln~~tv~-fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 84 SDE-------EVLSYYISFLKTLSLKLNKDTVQ-FFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred Ccc-------hhHHHHHHHHHHHHhhcCCCcee-EeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 444 8888888888888842 11111 1222 245665544 45677777777766665554
No 366
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.24 E-value=4.6e+02 Score=25.57 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=49.0
Q ss_pred HHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccC-------------hhhHHHHHhcCCHHHHHHhhCC-CCHHH
Q 015851 285 KEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATD-------------SDCKVHIVQRGAVRPLIEMLQS-PDVQL 349 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~-------------~~~~~~l~~~g~v~~L~~ll~~-~~~~v 349 (399)
.-+.+.++++.|+.+|. ..++.++.+|+.+|..+...+ ....+.+.....+..|++.+-. .....
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcch
Confidence 33446788899999886 445577888887766664321 1234456666777777776642 33444
Q ss_pred HHHHHHHHHHhhccC
Q 015851 350 REMSAFALGRLAQVI 364 (399)
Q Consensus 350 ~~~a~~~L~~l~~~~ 364 (399)
...++.++..+-+..
T Consensus 136 lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 136 LVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555666666555444
No 367
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.08 E-value=5.6e+02 Score=26.38 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=44.9
Q ss_pred HHHHH-HHHHcC---ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhc
Q 015851 82 RATHV-LAELAK---NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (399)
Q Consensus 82 ~a~~~-L~~l~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~ 156 (399)
.+.++ +..+++ +......+...|++.-.+.-+...-..+..+.....-......+.++|.+.+ .++.++..++..
T Consensus 476 lamet~vl~lsSk~~~d~~k~elr~Lg~lq~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~yLis~ 555 (865)
T KOG2152|consen 476 LAMETLVLILSSKRAGDWFKSELRNLGGLQHIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGYLISL 555 (865)
T ss_pred hhhheeEEEEeccccchhHHHHHHhcchHHHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHHHHhc
Confidence 34444 344444 2556667788898888887665433222221111111123367888888888 788898888766
Q ss_pred C
Q 015851 157 G 157 (399)
Q Consensus 157 ~ 157 (399)
|
T Consensus 556 g 556 (865)
T KOG2152|consen 556 G 556 (865)
T ss_pred c
Confidence 5
No 368
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=32.15 E-value=1.1e+02 Score=25.02 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHhh
Q 015851 346 DVQLREMSAFALGRLA 361 (399)
Q Consensus 346 ~~~v~~~a~~~L~~l~ 361 (399)
++.||..|+..|..+.
T Consensus 84 d~~VR~yAV~~L~~~s 99 (171)
T cd00872 84 DEHVREFAVRCLEKLS 99 (171)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 4444554444444433
No 369
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=31.49 E-value=1.3e+02 Score=21.15 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=40.1
Q ss_pred cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh----hcCCCHHHHHHHHHHH
Q 015851 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL----LEFTDTKVQRAAAGAL 231 (399)
Q Consensus 156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----l~~~~~~v~~~a~~~L 231 (399)
...+.++..++...... ++++..+.++..+...... -..+| -+.+... ..++++.+...|..++
T Consensus 16 ~~fL~Pf~~i~~~~~~~-------~vre~il~ci~qil~~~~~----~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSI-------DVRELILECILQILQSRGE----NIKSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHhHH----HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34677788877555433 8999999999999853321 12233 3444433 3455677777776665
Q ss_pred H
Q 015851 232 R 232 (399)
Q Consensus 232 ~ 232 (399)
.
T Consensus 84 ~ 84 (86)
T PF09324_consen 84 Q 84 (86)
T ss_pred h
Confidence 3
No 370
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=31.46 E-value=2.8e+02 Score=22.32 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH-HCC-CcHHHHH-hhcCCC--hHHHHHHHHHHHHhh
Q 015851 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-AAG-ALQPVIG-LLSSCC--SESQREAALLLGQFA 319 (399)
Q Consensus 245 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~-~l~~L~~-lL~~~~--~~v~~~a~~~L~~l~ 319 (399)
+++....+.+.+.+.++++.+-..+++++..+... .+..+. +-+ ++..++. ++.+.+ ..-+.-++.++..++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 44556788888888777799999999999999743 222211 112 3455554 555433 366677888999998
Q ss_pred cc
Q 015851 320 AT 321 (399)
Q Consensus 320 ~~ 321 (399)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 64
No 371
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.98 E-value=1.1e+02 Score=27.62 Aligned_cols=54 Identities=28% Similarity=0.310 Sum_probs=42.8
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--------------hhHHHHHhcCCHHHHHHhhc
Q 015851 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--------------ENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--------------~~~~~~~~~~~~~~L~~ll~ 259 (399)
...+..++.-|.+.+...+..|+++|..++.|.- .+...+.+.|+++.+..+|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567778888899999999999999999997532 24455677899999988885
No 372
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.79 E-value=2.2e+02 Score=21.08 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=47.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhh----c--CCChHHHHHHHHHHHHh
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLL----S--SCCSESQREAALLLGQF 318 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL----~--~~~~~v~~~a~~~L~~l 318 (399)
++..|.+-|.+.++.+...|+.+|-.++.+. +.....+....++..++.+. . ..+..++..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4556777778889999999999999998644 44555566666666665431 1 23557787777766654
No 373
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.49 E-value=5.4e+02 Score=25.41 Aligned_cols=125 Identities=10% Similarity=-0.041 Sum_probs=73.8
Q ss_pred hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccc--cCccccccHHHHH
Q 015851 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM--DSNCSRAVNSVIR 183 (399)
Q Consensus 106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~--~~~~~~~~~~~~~ 183 (399)
+|.++.++...-..- -.+-+-.+.....+....|.+||...-.-.-...+|.++.++-... ......+.|.++.
T Consensus 241 lPyFv~fIae~vs~n----i~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 241 LPYFVTFIAEGVSVN----IVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHhhheeec----cccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHH
Confidence 566666665432210 0111235667778888888888876543333336777777764332 1123344578999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 015851 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLA 235 (399)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~ 235 (399)
.++..+..+|.+...... -.+..++..+.+.+.++ ......-++..|..+.
T Consensus 317 fAA~ll~~i~k~f~~~y~-~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTLYN-NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 999999999964443332 24455666677776665 3566666666666555
No 374
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=29.47 E-value=1.6e+02 Score=21.07 Aligned_cols=58 Identities=16% Similarity=0.000 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHhh
Q 015851 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLA 235 (399)
Q Consensus 177 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~L~ 235 (399)
+.+.++..++..|..++........ -....++..+.+.+.+++ ...+.-|+..|..+.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~-~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYP-TLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3569999999999999964332211 123345666777776544 567777777777774
No 375
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.14 E-value=6.7e+02 Score=26.06 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh
Q 015851 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (399)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 325 (399)
.++++|..+-.++=++++..++.++.++..+.++.-. .++..++.-|..++..+...|...|.+|...-|..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 3566666666666779999999999998877666533 34677888888888889899999888887654443
No 376
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=28.79 E-value=4.1e+02 Score=23.47 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=57.4
Q ss_pred hhHHHHHhcCcHH-HHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHH
Q 015851 148 EHQQLIVDNGALS-HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA 226 (399)
Q Consensus 148 ~~~~~i~~~~~i~-~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 226 (399)
..+..+.+.+.++ .|+-+|....++. .+...++..|.+|+. ... .. .+-. ..+...+..
T Consensus 31 ~v~r~lg~~~iv~~DLiPiL~~~~~~~------~l~~~~l~LLV~LT~-P~~----~~-~~~~--------~~~~~~~~~ 90 (266)
T PF04821_consen 31 DVRRQLGEWNIVQKDLIPILISYKDDD------KLFLACLRLLVNLTW-PIE----LL-VESQ--------PKDKNQRRN 90 (266)
T ss_pred HHHHHHHHhchhhhhHHHHHHhccCch------HHHHHHHHHHHHhCC-CHH----Hh-ccCC--------CCChHHHHH
Confidence 3455666666666 5777776665432 666777777777772 110 00 0000 012222222
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcC
Q 015851 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~ 279 (399)
.......+. .++..+.+.+++..++..+.. .+..+....+..+.|+..-
T Consensus 91 ~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 91 IPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAI 150 (266)
T ss_pred HHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 222222222 355666666677766665521 2346778888888888743
No 377
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.59 E-value=1.4e+02 Score=21.36 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 276 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l 276 (399)
+++..+|..|+..|..++...... ..-++..+...+.+.+.++ ......-|+..|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999742222 2223334666777777654 446777788888777
No 378
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=26.93 E-value=2.3e+02 Score=22.58 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=43.5
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITVSVL 369 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (399)
.++.++..+...++....++...|..-...++.. -+.++. -+++.||+-|+..|..+..+.-..++
T Consensus 40 ~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~------------aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~yl 107 (152)
T cd00864 40 ALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED------------ALELLSPKYPDPVVRQYAVRVLESASDDELLLYL 107 (152)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH------------HHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4666666666666665555555555433222221 223332 25678888888888775555444566
Q ss_pred hhHHHHHhhcc
Q 015851 370 PAILIFIIINE 380 (399)
Q Consensus 370 ~~~~~~~~~~~ 380 (399)
|.+++.+.-+.
T Consensus 108 pQLVQaLkye~ 118 (152)
T cd00864 108 PQLVQALKYEP 118 (152)
T ss_pred HHHHHHHhccc
Confidence 77766665544
No 379
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=26.74 E-value=5.8e+02 Score=24.54 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=25.2
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (399)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 239 (399)
.+...+|.+...|..+-.+..-.+...|+.|....+
T Consensus 114 ~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345667888888888777777777777777776433
No 380
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=26.48 E-value=2.8e+02 Score=20.80 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=42.2
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 208 ~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (399)
.+|.+.+.|. +..++.+..+.-.++.|+.. -.....+++. .+..+++....... ...++.+|..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k-~~L~~~~l~~-l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASK-VPLSDEVLNA-LMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhh-cCCcHHHHHH-HHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 4677888888 66789999999999999973 3333333332 22223322222222 47788888888743
No 381
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.72 E-value=2.5e+02 Score=31.65 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (399)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (399)
.++.+.++.++..+......+=... ..+.+..++..|+..+.+++..-...|+.+|..|+...+...... +..+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l 515 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFL 515 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHH
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
..++..+..=+..-......+|+.++... .....-+...+.-.+.+.+.+.+...++..+-....+...
T Consensus 516 ~giLD~l~~Ls~~qiR~lf~il~~La~~~-~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~ 584 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIRKLFDILCTLAFSD-SSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKH 584 (1426)
T ss_dssp HGGGGGGGG--HHHHHHHHHHHHHHHHHH-SS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCC-cccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
No 382
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.69 E-value=1.1e+03 Score=26.96 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=114.2
Q ss_pred hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHHHhccccC
Q 015851 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDS 172 (399)
Q Consensus 94 ~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~~~i~~L~~~L~~~~~~ 172 (399)
.+.+..+++.|.+..+..-+++.++ .+|..|.+++...-.+-++. +.+.+.-.+..++.+.+....+
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~------------~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e 1496 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDP------------SMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRE 1496 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC
Confidence 4445478888999888888887766 78888888888777555553 4444444567777777776655
Q ss_pred ccccccHHHHHHHHHHHHHHhhcCc--h----h-----HHHHHhcCChHHHHHhhcCCCHH---HHHHHHHHHHHhhcCC
Q 015851 173 NCSRAVNSVIRRAADAITNLAHENS--S----I-----KTRVRMEGGIPPLVELLEFTDTK---VQRAAAGALRTLAFKN 238 (399)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~l~~~~~--~----~-----~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~L~~L~~~~ 238 (399)
+..+-. .+...-..-...++ -.| . . .....+-.++|.+-+.+.+..++ .|......+..... .
T Consensus 1497 ~~~Rl~-si~alF~A~~~~il-l~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glk-s 1573 (1758)
T KOG1791|consen 1497 SDPRLI-SICALFIAFFSDIL-LVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLK-S 1573 (1758)
T ss_pred CCcchh-hHHHHHHHHHHHHH-cCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhc-C
Confidence 433210 11111111112222 111 0 0 01233446677777776654433 45555555555554 3
Q ss_pred hhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC
Q 015851 239 DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 303 (399)
+...+.....+++..++....++ +.+.+...+.+|++-+.-.......+-..|...-+..++.++
T Consensus 1574 ~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1574 CPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred chhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcccc
Confidence 34444555667777777777764 456666778888877654333334444567788888888754
No 383
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=24.63 E-value=2.5e+02 Score=23.49 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=67.4
Q ss_pred hHHHHHhhcC-CCHHHHHHH-HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 209 IPPLVELLEF-TDTKVQRAA-AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 209 i~~L~~ll~~-~~~~v~~~a-~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
++.+-..+.. ++..+.... ..+++.+.... ....+.+...+.++++-++..++.++...... ....
T Consensus 87 ~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~- 154 (213)
T PF08713_consen 87 LELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD- 154 (213)
T ss_dssp HHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-
T ss_pred HHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-
Confidence 3445555554 346555554 33444444311 23567788888999998888887777655533 1111
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhc
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (399)
..+..+...+.+++..++....|+|..++..+++....++..
T Consensus 155 ----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 155 ----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp ----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 134455566778888999999999999998887766655553
No 384
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.59 E-value=2.2e+02 Score=27.60 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=52.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-HHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhh
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFA 319 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~ 319 (399)
++..|.+.+.+.++.++..|+.+|-.+..+... ....+.+.++++.++...... +..||..++..|-...
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 566778888888889999999988877755444 334778889999999988754 5588888877775443
No 385
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.21 E-value=3.2e+02 Score=20.26 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=48.8
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhh------CCCCHHHHHHHHHHHHHhh
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEML------QSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll------~~~~~~v~~~a~~~L~~l~ 361 (399)
++..|.+-|.++++.+...|+..|-.++..+. .....+....++..++++. ...+..||..+...+...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 46677777888899999999999998886543 4455565665555554431 1347788888888776654
No 386
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.10 E-value=1.4e+02 Score=24.59 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=50.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcch
Q 015851 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLP 370 (399)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 370 (399)
+.+..+..+++.-++..+..++...... ..... ..++.+-.++.+++..|+.+..++|..++...++..++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 6778888899988888887777666532 11111 12344555556788889999999999999987765444
No 387
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=22.86 E-value=2.1e+02 Score=23.99 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=52.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
...+.+...+.++++-.++.++-++...... .... ..+..+...+.+++.-++....|+|..++..+++....
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4456677888899998898887776555542 1111 23444555667788899999999999999877776555
Q ss_pred HHHC
Q 015851 287 VLAA 290 (399)
Q Consensus 287 ~~~~ 290 (399)
.+..
T Consensus 193 ~l~~ 196 (213)
T PF08713_consen 193 FLQK 196 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 388
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.73 E-value=1.3e+02 Score=23.74 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=26.1
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 331 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
...+-..+..++.++++++|+.|..||...-.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34456678889999999999999999988654
No 389
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=22.14 E-value=2.4e+02 Score=26.68 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=21.1
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHH
Q 015851 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVN 98 (399)
Q Consensus 62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 98 (399)
++|+|.-+....+.+.....-|+-++.-++.|+...+
T Consensus 401 VvPiL~iLy~a~~~NSHHvYmaLIvlLILsEDdgFnk 437 (695)
T KOG2225|consen 401 VVPILRILYDATSNNSHHVYMALIVLLILSEDDGFNK 437 (695)
T ss_pred HHHHHHHHhcCCcCCccchHHHHHHHHHhcccchhhH
Confidence 4566555544444454445566777777777654433
No 390
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.05 E-value=2.1e+02 Score=25.66 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=40.3
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--------------hHHHHHHHCCCcHHHHHhhc
Q 015851 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--------------NIKKEVLAAGALQPVIGLLS 301 (399)
Q Consensus 248 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~~~~~~~l~~L~~lL~ 301 (399)
...+..++.-|.+++...|..|+++|..++.+.- .+...+.+.|+++.+..+|+
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456678888888888899999999999885421 22345567899999998885
No 391
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=21.88 E-value=2.1e+02 Score=27.61 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhcCChhh-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851 221 TKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (399)
...|..++.+|+.++..-+.. ...+.+ +.|+..|++....-|..|+.++...+...........-..+.+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 456889999999998743222 111111 268888988887778888888888775332211100011234566666
Q ss_pred hcCCC
Q 015851 300 LSSCC 304 (399)
Q Consensus 300 L~~~~ 304 (399)
|..+.
T Consensus 177 L~~~~ 181 (441)
T PF12054_consen 177 LENPE 181 (441)
T ss_pred HcCCC
Confidence 66443
No 392
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=21.80 E-value=7.2e+02 Score=23.90 Aligned_cols=35 Identities=9% Similarity=0.221 Sum_probs=25.3
Q ss_pred hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc
Q 015851 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS 197 (399)
Q Consensus 155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 197 (399)
+...+|.+..+|+.+-. +...++...|+.|....+
T Consensus 115 E~~L~P~f~~ILq~dV~--------EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 115 EEALFPPFQEILQQDVQ--------EFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHHHTT-T--------TTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHcCC
Confidence 44578888888887766 677778888888875444
No 393
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.51 E-value=2.8e+02 Score=22.52 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=39.0
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITVSVL 369 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (399)
+++.++.-..-.++....++...|.....-++ ..-+.+|. -.++.||..|+..|..+..+.--.++
T Consensus 47 aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~------------~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL 114 (166)
T cd00870 47 ALTKFLKSVNWSDEQEVKQALELMPKWAKIDI------------EDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYL 114 (166)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCH------------HHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444444444455555555555554432221 12233332 24677888887777775543333455
Q ss_pred hhHHHHHhhcc
Q 015851 370 PAILIFIIINE 380 (399)
Q Consensus 370 ~~~~~~~~~~~ 380 (399)
|.+++.+.-+.
T Consensus 115 ~QLVQaLKyE~ 125 (166)
T cd00870 115 LQLVQALKYEN 125 (166)
T ss_pred HHHHHHHHhcc
Confidence 65555554443
No 394
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=8.2e+02 Score=24.36 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=55.9
Q ss_pred cHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhH
Q 015851 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAI 372 (399)
Q Consensus 293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 372 (399)
+..+-..+..+++.+|...-.+++-+...+|..+ ++..|-+..++++..+..++..+++-+...+.|.-+..+
T Consensus 643 lRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~-------vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaql 715 (881)
T COG5110 643 LRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMN-------VFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQL 715 (881)
T ss_pred HHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchH-------HHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHH
Confidence 4555666777888888888888888876666442 367788888889999999999999988888777544444
Q ss_pred HH
Q 015851 373 LI 374 (399)
Q Consensus 373 ~~ 374 (399)
++
T Consensus 716 Lr 717 (881)
T COG5110 716 LR 717 (881)
T ss_pred HH
Confidence 33
Done!