Query 015851
Match_columns 399
No_of_seqs 298 out of 2021
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.2E-35 4.2E-40 288.8 29.5 317 59-393 117-444 (529)
2 3ul1_B Importin subunit alpha- 100.0 3E-35 1E-39 284.5 28.1 316 60-393 99-425 (510)
3 3nmw_A APC variant protein; AR 100.0 5.3E-35 1.8E-39 267.0 24.5 281 78-367 47-339 (354)
4 3nmz_A APC variant protein; pr 100.0 1.7E-34 5.7E-39 271.3 24.7 278 82-368 167-456 (458)
5 3nmz_A APC variant protein; pr 100.0 2.8E-33 9.6E-38 263.0 25.1 339 55-394 64-449 (458)
6 3tpo_A Importin subunit alpha- 100.0 3.9E-32 1.3E-36 264.2 30.9 289 60-365 161-452 (529)
7 4b8j_A Importin subunit alpha- 100.0 8.1E-32 2.8E-36 262.4 30.5 308 61-391 117-436 (528)
8 3ul1_B Importin subunit alpha- 100.0 8.3E-32 2.8E-36 260.5 29.4 289 60-365 142-433 (510)
9 3now_A UNC-45 protein, SD10334 100.0 7E-32 2.4E-36 267.2 27.5 287 56-365 416-740 (810)
10 1wa5_B Importin alpha subunit; 100.0 4.4E-31 1.5E-35 257.3 32.1 309 60-391 129-450 (530)
11 4b8j_A Importin subunit alpha- 100.0 6.8E-31 2.3E-35 255.9 31.3 297 61-379 74-383 (528)
12 1wa5_B Importin alpha subunit; 100.0 1.3E-29 4.4E-34 246.9 35.4 298 60-379 86-395 (530)
13 1xm9_A Plakophilin 1; armadill 100.0 4.5E-31 1.5E-35 251.6 23.3 291 63-378 4-382 (457)
14 3now_A UNC-45 protein, SD10334 100.0 4.2E-31 1.4E-35 261.7 23.3 285 59-365 493-785 (810)
15 4hxt_A De novo protein OR329; 100.0 9E-30 3.1E-34 223.7 27.1 245 104-368 2-247 (252)
16 2jdq_A Importin alpha-1 subuni 100.0 1.6E-29 5.5E-34 241.2 30.5 310 61-393 64-385 (450)
17 3l6x_A Catenin delta-1; cateni 100.0 4.7E-30 1.6E-34 246.3 26.1 297 58-377 45-405 (584)
18 3nmw_A APC variant protein; AR 100.0 3.5E-29 1.2E-33 228.6 25.5 249 58-325 70-339 (354)
19 2jdq_A Importin alpha-1 subuni 100.0 9.3E-29 3.2E-33 235.9 29.4 284 60-365 106-393 (450)
20 1xm9_A Plakophilin 1; armadill 100.0 3.2E-29 1.1E-33 238.8 25.3 290 59-366 42-453 (457)
21 4db8_A Armadillo-repeat protei 100.0 8.3E-29 2.8E-33 217.7 24.7 240 104-363 12-252 (252)
22 4hxt_A De novo protein OR329; 100.0 3.6E-28 1.2E-32 213.4 25.8 239 63-323 4-244 (252)
23 3l6x_A Catenin delta-1; cateni 100.0 9.1E-28 3.1E-32 230.5 28.0 292 58-365 87-479 (584)
24 4db8_A Armadillo-repeat protei 100.0 5.4E-28 1.8E-32 212.5 22.7 227 74-320 23-251 (252)
25 1jdh_A Beta-catenin; beta-cate 100.0 1.1E-26 3.8E-31 226.1 28.1 294 60-378 16-319 (529)
26 1jdh_A Beta-catenin; beta-cate 100.0 1.6E-25 5.5E-30 217.9 31.8 296 60-377 58-407 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 7.7E-26 2.6E-30 225.2 28.3 294 60-378 13-316 (644)
28 2z6h_A Catenin beta-1, beta-ca 99.9 2.1E-25 7.1E-30 222.0 29.6 296 60-377 55-404 (644)
29 4db6_A Armadillo repeat protei 99.9 1.5E-25 5E-30 191.3 23.7 201 155-363 10-210 (210)
30 2z6g_A B-catenin; FULL-length, 99.9 7.7E-25 2.6E-29 221.5 27.7 294 60-378 149-452 (780)
31 4db6_A Armadillo repeat protei 99.9 7.2E-25 2.5E-29 187.0 23.0 200 101-320 9-209 (210)
32 2z6g_A B-catenin; FULL-length, 99.9 1.1E-24 3.6E-29 220.5 26.1 281 60-365 191-475 (780)
33 1xqr_A HSPBP1 protein; armadil 99.9 5.9E-24 2E-28 189.0 23.6 191 74-283 51-243 (296)
34 1xqr_A HSPBP1 protein; armadil 99.9 2.1E-23 7.3E-28 185.4 22.3 224 131-362 55-287 (296)
35 3tt9_A Plakophilin-2; cell adh 99.9 7.4E-23 2.5E-27 174.2 17.4 198 158-363 9-230 (233)
36 3opb_A SWI5-dependent HO expre 99.9 9.4E-23 3.2E-27 198.5 20.0 288 55-362 370-728 (778)
37 3tt9_A Plakophilin-2; cell adh 99.9 2E-22 7E-27 171.5 17.4 196 105-320 9-229 (233)
38 3opb_A SWI5-dependent HO expre 99.9 1.2E-21 4.2E-26 190.7 24.7 281 60-365 333-686 (778)
39 3grl_A General vesicular trans 99.7 1.1E-15 3.9E-20 145.2 25.0 288 58-365 57-397 (651)
40 3grl_A General vesicular trans 99.7 1.6E-14 5.6E-19 137.3 24.2 269 77-366 36-346 (651)
41 1oyz_A Hypothetical protein YI 99.6 1.5E-13 5.1E-18 122.1 23.6 238 62-377 24-262 (280)
42 4fdd_A Transportin-1; heat rep 99.5 4.1E-14 1.4E-18 145.3 14.7 279 59-367 172-476 (852)
43 4fdd_A Transportin-1; heat rep 99.5 2.3E-13 7.8E-18 139.8 19.6 277 58-364 125-431 (852)
44 1oyz_A Hypothetical protein YI 99.5 3.2E-12 1.1E-16 113.5 23.3 215 100-378 19-234 (280)
45 3ltm_A Alpha-REP4; protein eng 99.5 5.6E-13 1.9E-17 113.1 16.2 190 103-366 18-207 (211)
46 1b3u_A Protein (protein phosph 99.5 1.7E-12 5.9E-17 127.4 20.0 298 60-395 280-584 (588)
47 3ltj_A Alpharep-4; protein eng 99.5 1.2E-12 4.2E-17 110.1 15.7 184 104-361 14-197 (201)
48 1b3u_A Protein (protein phosph 99.5 6.2E-12 2.1E-16 123.5 21.5 296 59-393 85-387 (588)
49 3ltm_A Alpha-REP4; protein eng 99.4 6.5E-12 2.2E-16 106.5 16.2 188 59-321 17-204 (211)
50 1ibr_B P95, importin beta-1 su 99.4 3.6E-12 1.2E-16 121.3 15.9 282 58-366 125-441 (462)
51 2vgl_B AP-2 complex subunit be 99.4 3.2E-11 1.1E-15 118.5 20.9 300 60-398 120-493 (591)
52 3ltj_A Alpharep-4; protein eng 99.4 5.1E-11 1.7E-15 100.1 19.1 184 61-319 14-197 (201)
53 4gmo_A Putative uncharacterize 99.3 3.3E-11 1.1E-15 120.1 13.5 204 59-277 33-257 (684)
54 1qgr_A Protein (importin beta 99.2 4.9E-10 1.7E-14 115.3 21.6 284 57-365 124-440 (876)
55 1w63_A Adapter-related protein 99.2 3.6E-10 1.2E-14 111.4 18.4 273 60-376 141-431 (618)
56 2vgl_B AP-2 complex subunit be 99.2 2.8E-10 9.6E-15 111.7 17.4 253 73-366 59-315 (591)
57 1qgr_A Protein (importin beta 99.2 3.7E-10 1.3E-14 116.1 18.9 278 58-363 169-480 (876)
58 2bpt_A Importin beta-1 subunit 99.2 8.2E-11 2.8E-15 120.8 12.7 278 59-367 367-673 (861)
59 2bpt_A Importin beta-1 subunit 99.2 5.5E-09 1.9E-13 107.2 26.3 280 58-364 131-442 (861)
60 4gmo_A Putative uncharacterize 99.2 1.6E-10 5.5E-15 115.1 13.7 194 106-319 36-257 (684)
61 1ibr_B P95, importin beta-1 su 99.2 3.1E-10 1.1E-14 107.8 15.0 310 60-395 34-392 (462)
62 1w63_A Adapter-related protein 99.2 1.2E-09 4.2E-14 107.6 18.9 270 73-393 117-409 (618)
63 2db0_A 253AA long hypothetical 99.1 5.8E-08 2E-12 76.6 20.9 217 101-362 29-246 (253)
64 1u6g_C TIP120 protein, CAND1; 98.9 1.9E-08 6.4E-13 107.3 16.4 265 73-367 16-289 (1230)
65 2qk2_A LP04448P; mini spindles 98.9 2.3E-08 7.7E-13 86.4 12.7 189 161-367 19-210 (242)
66 2db0_A 253AA long hypothetical 98.8 2.9E-06 1E-10 67.0 21.5 225 49-320 20-246 (253)
67 2vgl_A Adaptor protein complex 98.8 1E-06 3.4E-11 86.7 23.1 248 73-365 121-401 (621)
68 1u6g_C TIP120 protein, CAND1; 98.8 4.3E-07 1.5E-11 96.9 22.1 281 60-367 373-684 (1230)
69 3b2a_A TON_1937, putative unch 98.8 5.9E-07 2E-11 74.0 17.6 198 157-376 33-233 (265)
70 2vgl_A Adaptor protein complex 98.8 5.5E-07 1.9E-11 88.5 20.2 278 61-376 146-450 (621)
71 1te4_A Conserved protein MTH18 98.7 8.8E-10 3E-14 85.6 -1.0 122 205-360 10-131 (131)
72 2qk1_A Protein STU2; STU2P, XM 98.7 1.4E-07 4.9E-12 81.5 12.6 189 180-369 31-227 (249)
73 4ady_A RPN2, 26S proteasome re 98.6 2.2E-05 7.4E-10 78.9 27.4 243 62-367 430-681 (963)
74 1ho8_A Vacuolar ATP synthase s 98.6 5.8E-06 2E-10 76.3 21.1 232 131-364 183-478 (480)
75 1ho8_A Vacuolar ATP synthase s 98.6 2E-06 6.8E-11 79.3 16.4 233 80-320 185-476 (480)
76 3b2a_A TON_1937, putative unch 98.6 5.6E-06 1.9E-10 68.3 16.7 151 207-366 33-183 (265)
77 2qk2_A LP04448P; mini spindles 98.5 2.9E-07 9.9E-12 79.4 8.4 172 131-320 30-205 (242)
78 3dad_A FH1/FH2 domain-containi 98.4 1.6E-05 5.5E-10 69.8 17.8 183 160-351 121-325 (339)
79 4ady_A RPN2, 26S proteasome re 98.4 9.9E-05 3.4E-09 74.2 25.4 276 62-396 393-674 (963)
80 1te4_A Conserved protein MTH18 98.3 4.6E-08 1.6E-12 75.8 -0.7 122 102-276 10-131 (131)
81 2qk1_A Protein STU2; STU2P, XM 98.3 1.1E-06 3.6E-11 76.0 7.5 183 74-278 27-220 (249)
82 3tjz_B Coatomer subunit gamma; 98.3 2.6E-05 8.8E-10 70.3 16.5 219 107-367 71-321 (355)
83 3tjz_B Coatomer subunit gamma; 98.2 1.3E-05 4.3E-10 72.3 11.3 230 75-358 116-349 (355)
84 3dad_A FH1/FH2 domain-containi 98.2 4.9E-05 1.7E-09 66.8 14.4 156 210-366 121-290 (339)
85 2iw3_A Elongation factor 3A; a 98.1 0.0021 7.1E-08 65.5 27.0 259 61-363 54-325 (986)
86 2fv2_A RCD1 required for cell 98.0 0.0022 7.6E-08 53.8 19.8 206 77-288 15-233 (268)
87 2fv2_A RCD1 required for cell 97.6 0.0012 4E-08 55.5 12.5 177 80-276 73-266 (268)
88 2iw3_A Elongation factor 3A; a 97.6 0.0029 1E-07 64.4 18.0 259 80-376 31-299 (986)
89 1lrv_A LRV, leucine-rich repea 97.4 0.00041 1.4E-08 59.1 8.1 14 73-86 60-73 (244)
90 1wa5_C Importin alpha RE-expor 97.3 0.0032 1.1E-07 65.3 15.1 276 78-370 261-590 (960)
91 2of3_A ZYG-9; multifunctional 97.3 0.0066 2.3E-07 52.1 14.4 141 216-369 96-243 (266)
92 1wa5_C Importin alpha RE-expor 97.3 0.031 1E-06 57.9 21.5 216 130-363 260-526 (960)
93 4ffb_C Protein STU2; tubulin f 97.2 0.015 5.2E-07 50.6 16.5 181 179-366 23-216 (278)
94 1upk_A MO25 protein; transfera 97.2 0.048 1.6E-06 47.9 18.9 204 151-366 72-287 (341)
95 2x19_B Importin-13; nuclear tr 97.2 0.044 1.5E-06 56.7 21.9 221 130-368 463-720 (963)
96 2x1g_F Cadmus; transport prote 97.1 0.026 9E-07 58.5 18.9 221 131-366 479-726 (971)
97 1upk_A MO25 protein; transfera 97.1 0.083 2.8E-06 46.4 18.6 242 98-362 72-332 (341)
98 2x1g_F Cadmus; transport prote 96.9 0.032 1.1E-06 57.8 18.0 260 75-367 256-577 (971)
99 2x19_B Importin-13; nuclear tr 96.8 0.092 3.2E-06 54.3 20.6 102 259-369 459-563 (963)
100 3ibv_A Exportin-T; karyopherin 96.7 0.084 2.9E-06 54.6 18.7 280 75-377 205-541 (980)
101 3ebb_A Phospholipase A2-activa 96.5 0.09 3.1E-06 46.2 15.1 161 135-302 121-287 (304)
102 4ffb_C Protein STU2; tubulin f 96.5 0.1 3.6E-06 45.2 15.4 182 209-397 12-211 (278)
103 1lrv_A LRV, leucine-rich repea 96.5 0.0057 1.9E-07 52.1 6.9 155 94-357 64-218 (244)
104 2of3_A ZYG-9; multifunctional 96.4 0.062 2.1E-06 46.0 13.0 127 180-319 102-235 (266)
105 4hat_C Exportin-1; heat repeat 96.4 0.016 5.4E-07 60.1 10.7 144 219-367 465-623 (1023)
106 3ebb_A Phospholipase A2-activa 96.2 0.14 4.8E-06 45.0 14.4 135 220-357 161-301 (304)
107 3oc3_A Helicase MOT1, MOT1; re 96.2 0.0054 1.9E-07 57.5 5.5 176 180-381 243-420 (800)
108 3ibv_A Exportin-T; karyopherin 96.2 0.092 3.2E-06 54.3 15.2 102 262-369 456-573 (980)
109 3c2g_A SYS-1 protein; beta-cat 96.1 0.074 2.5E-06 46.7 11.6 131 231-363 266-404 (619)
110 3oc3_A Helicase MOT1, MOT1; re 96.0 0.011 3.8E-07 55.4 6.7 238 73-358 184-432 (800)
111 3m1i_C Exportin-1; heat repeat 96.0 0.32 1.1E-05 50.9 18.7 177 180-365 428-621 (1049)
112 3gjx_A Exportin-1; transport, 95.9 1.1 3.9E-05 46.5 21.6 104 262-367 492-600 (1073)
113 4hat_C Exportin-1; heat repeat 95.8 0.032 1.1E-06 57.8 10.0 141 178-323 466-621 (1023)
114 3c2g_A SYS-1 protein; beta-cat 95.6 0.28 9.7E-06 43.2 13.3 134 183-319 261-402 (619)
115 3m1i_C Exportin-1; heat repeat 95.4 0.63 2.1E-05 48.6 17.8 137 223-365 429-572 (1049)
116 3l9t_A Putative uncharacterize 95.0 0.29 9.9E-06 40.8 11.0 131 180-331 86-218 (240)
117 3l9t_A Putative uncharacterize 94.9 0.36 1.2E-05 40.2 11.4 138 209-367 73-212 (240)
118 2f31_A Diaphanous protein homo 94.7 1.6 5.6E-05 36.5 17.5 146 205-351 41-217 (233)
119 3eg5_B Protein diaphanous homo 94.7 2.5 8.4E-05 38.4 19.8 143 206-349 108-281 (383)
120 1lsh_A Lipovitellin (LV-1N, LV 94.3 3.1 0.00011 43.4 19.5 164 209-395 393-573 (1056)
121 3u0r_A Apoptosis inhibitor 5; 94.2 1.2 4E-05 41.2 14.1 131 217-367 38-168 (507)
122 2f31_A Diaphanous protein homo 94.0 2.2 7.4E-05 35.8 14.6 163 146-309 33-217 (233)
123 3u0r_A Apoptosis inhibitor 5; 93.3 1.4 4.8E-05 40.8 12.7 117 180-316 43-159 (507)
124 3eg5_B Protein diaphanous homo 92.8 3.7 0.00013 37.2 15.1 162 146-309 99-283 (383)
125 2bnx_A Diaphanous protein homo 92.1 6.8 0.00023 35.5 19.4 144 206-350 46-220 (386)
126 3gjx_A Exportin-1; transport, 91.9 9.5 0.00033 39.7 18.5 205 131-364 43-277 (1073)
127 2bnx_A Diaphanous protein homo 91.9 7.2 0.00025 35.4 15.8 162 147-309 38-221 (386)
128 1lsh_A Lipovitellin (LV-1N, LV 91.5 1.9 6.3E-05 45.0 12.8 175 158-366 392-580 (1056)
129 3qml_C Protein SLS1, nucleotid 89.7 6.1 0.00021 34.2 12.1 178 180-364 43-249 (315)
130 3qml_C Protein SLS1, nucleotid 89.2 5.4 0.00018 34.5 11.5 145 211-362 26-189 (315)
131 3a6p_A Exportin-5; exportin-5, 86.1 5.9 0.0002 42.0 12.2 226 62-322 13-278 (1204)
132 3a6p_A Exportin-5; exportin-5, 86.1 22 0.00077 37.6 16.6 261 73-364 57-382 (1204)
133 3o2t_A Symplekin; heat repeat, 83.2 26 0.00089 31.6 15.6 153 206-366 62-260 (386)
134 3o2t_A Symplekin; heat repeat, 80.6 22 0.00077 32.0 11.9 129 223-361 41-182 (386)
135 3gs3_A Symplekin, LD45768P; he 72.6 43 0.0015 28.3 19.4 153 206-366 52-247 (257)
136 1mhq_A ADP-ribosylation factor 71.5 10 0.00036 29.0 6.3 75 292-366 39-120 (148)
137 3g2s_A C-terminal fragment of 71.1 12 0.00043 28.6 6.6 75 292-366 49-130 (149)
138 1x5b_A Signal transducing adap 70.3 9.5 0.00033 29.8 5.9 75 292-366 53-129 (163)
139 3ldz_A STAM-1, signal transduc 70.3 5.5 0.00019 30.2 4.5 71 250-320 43-114 (140)
140 3ldz_A STAM-1, signal transduc 70.1 24 0.00081 26.6 8.0 75 292-366 43-118 (140)
141 1x5b_A Signal transducing adap 69.9 7.5 0.00026 30.3 5.3 71 250-320 53-125 (163)
142 1mhq_A ADP-ribosylation factor 69.8 8.7 0.0003 29.4 5.5 71 250-320 39-116 (148)
143 4atg_A TAF6; transcription, TF 66.2 6.5 0.00022 31.7 4.3 130 138-277 27-161 (196)
144 3g2s_A C-terminal fragment of 65.3 14 0.00047 28.4 5.8 71 250-320 49-126 (149)
145 1juq_A ADP-ribosylation factor 64.6 12 0.00041 29.4 5.5 75 292-366 51-132 (171)
146 1juq_A ADP-ribosylation factor 64.1 9 0.00031 30.2 4.7 72 250-321 51-129 (171)
147 3gae_A Protein DOA1; UFD3, CDC 63.2 5.4 0.00019 33.8 3.5 99 180-281 105-220 (253)
148 3pst_A Protein DOA1; protein d 63.1 14 0.00048 33.7 6.3 101 180-283 277-394 (425)
149 3gae_A Protein DOA1; UFD3, CDC 62.9 7 0.00024 33.1 4.1 139 80-238 71-219 (253)
150 3l3f_X Protein DOA1, DOA1/UFD3 60.6 12 0.00043 33.3 5.4 100 180-282 214-330 (362)
151 2xpp_A IWS1, ECU08_0440; trans 57.2 49 0.0017 25.1 7.5 78 281-362 51-136 (145)
152 3pst_A Protein DOA1; protein d 55.3 20 0.00068 32.7 5.9 105 130-237 276-390 (425)
153 3l3f_X Protein DOA1, DOA1/UFD3 52.5 17 0.00057 32.5 4.9 105 130-237 213-327 (362)
154 3zyq_A Hepatocyte growth facto 52.2 27 0.00091 28.9 5.8 75 292-366 46-122 (226)
155 3zyq_A Hepatocyte growth facto 48.9 18 0.00062 29.9 4.3 71 250-320 46-118 (226)
156 3nfq_A Transcription factor IW 46.7 89 0.003 24.3 7.5 81 281-365 66-154 (170)
157 1dvp_A HRS, hepatocyte growth 40.9 37 0.0013 27.8 5.0 70 250-319 43-114 (220)
158 1vsy_5 Proteasome activator BL 40.8 34 0.0012 35.3 5.6 173 181-365 733-927 (997)
159 2npp_B PP2A, B subunit, serine 40.8 2.2E+02 0.0075 26.2 11.0 243 93-365 151-402 (449)
160 1elk_A Target of MYB1; superhe 40.0 45 0.0015 25.7 5.0 71 250-320 54-130 (157)
161 3gs3_A Symplekin, LD45768P; he 38.9 1.7E+02 0.0059 24.5 20.1 145 58-235 13-172 (257)
162 1dvp_A HRS, hepatocyte growth 36.1 61 0.0021 26.4 5.6 74 292-365 43-118 (220)
163 3fga_B Serine/threonine-protei 35.6 2.5E+02 0.0085 25.4 14.0 246 93-366 118-370 (403)
164 1elk_A Target of MYB1; superhe 35.2 76 0.0026 24.3 5.6 74 292-365 54-133 (157)
165 2xpp_A IWS1, ECU08_0440; trans 30.5 1.7E+02 0.006 22.0 9.8 85 145-235 49-135 (145)
166 2b6c_A Hypothetical protein EF 27.1 2.5E+02 0.0085 22.7 11.3 137 211-370 59-196 (220)
167 2b6c_A Hypothetical protein EF 27.0 2.5E+02 0.0085 22.7 9.7 95 180-289 105-199 (220)
168 1vdy_A Hypothetical protein (R 26.0 1.5E+02 0.0052 22.2 5.7 71 292-365 50-133 (140)
169 4atg_A TAF6; transcription, TF 25.9 47 0.0016 26.7 3.0 115 59-193 42-161 (196)
170 1vdy_A Hypothetical protein (R 23.7 2.2E+02 0.0074 21.3 6.1 80 60-145 48-130 (140)
171 1vsy_4 Proteasome activator BL 22.3 5.9E+02 0.02 25.4 10.8 120 242-365 333-458 (799)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.2e-35 Score=288.80 Aligned_cols=317 Identities=22% Similarity=0.331 Sum_probs=272.1
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
..+.+|.|..++.. ++++.+|..|+|+|.+++.+ ++.+..+++.|++|.|+.+|.+++. +++++|+
T Consensus 117 ~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e~A~ 183 (529)
T 3tpo_A 117 RAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQAV 183 (529)
T ss_dssp HTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred HCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 34567777777742 35678999999999999985 7888899999999999999998876 8999999
Q ss_pred HHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 015851 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (399)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (399)
|+|+||+ ++++++..+.+.|+++.|+.+|......... ..+++.++|+|.+++.............+++|.|+.++
T Consensus 184 ~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL 260 (529)
T 3tpo_A 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC---HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH---HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh
Confidence 9999999 7899999999999999999999876433211 16788999999999976555444455568899999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
.+++++++..++++|.+++.+.++....+...|+++.|+.+|.+++..++..++++|+|++.+++..+..+++.|+++.|
T Consensus 261 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L 340 (529)
T 3tpo_A 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF 340 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGH
T ss_pred cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHH
Confidence 99999999999999999999777778888899999999999999999999999999999998888888999999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC---------C
Q 015851 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV---------S 367 (399)
Q Consensus 297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------~ 367 (399)
+.+|.++++.++.+|+|+|+|++.+++.....+.+.|++|.|+.++.+++.++++.|+++|+|++..... +
T Consensus 341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g 420 (529)
T 3tpo_A 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG 420 (529)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Confidence 9999999999999999999999998889999999999999999999999999999999999999986543 4
Q ss_pred cchhHHHHHhhccccHHHHHHHHhhh
Q 015851 368 VLPAILIFIIINECQLEVLAFVLSEM 393 (399)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (399)
.++.++.++. ....+++..++..+
T Consensus 421 ~i~~L~~LL~--~~d~~i~~~~L~aL 444 (529)
T 3tpo_A 421 IIEPLMNLLS--AKDTKIIQVILDAI 444 (529)
T ss_dssp CHHHHHHGGG--CSCHHHHHHHHHHH
T ss_pred CHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 6676665554 33444444444433
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3e-35 Score=284.54 Aligned_cols=316 Identities=22% Similarity=0.333 Sum_probs=270.4
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.+|.|.+++.. ++++.+|.+|+|+|.|++.+ ++++..+++.|++|.|+.+|.+++. +++++|+|
T Consensus 99 ~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e~A~~ 165 (510)
T 3ul1_B 99 AGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQAVW 165 (510)
T ss_dssp TTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHH
T ss_pred CCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHH
Confidence 4567888887742 34578999999999999885 8899999999999999999998766 89999999
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
+|+|++ ++++++..+.+.|+++.|+.++...+..... ..+++.++|+|.+++.............+++|.|+.++.
T Consensus 166 aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~ 242 (510)
T 3ul1_B 166 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 242 (510)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh
Confidence 999999 7799999999999999999999876432211 167889999999999765544444555688999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
+++++++..++++|++|+.+.++....+.+.|+++.|+.+|.+++..++..++++|+|++.+++..+..+++.|+++.|+
T Consensus 243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~ 322 (510)
T 3ul1_B 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC
T ss_pred cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH
Confidence 99999999999999999997777778888999999999999999999999999999999988888889999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC---------Cc
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV---------SV 368 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------~~ 368 (399)
.+|.+++..++.+|+|+|+|++.++++.+..+.+.|+++.|+.++.+++.++++.|+++|.|++..... +.
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~ 402 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCC
Confidence 999999999999999999999988889999999999999999999999999999999999999986553 35
Q ss_pred chhHHHHHhhccccHHHHHHHHhhh
Q 015851 369 LPAILIFIIINECQLEVLAFVLSEM 393 (399)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (399)
++.++.++ .....+++..++..+
T Consensus 403 i~~L~~LL--~~~d~~i~~~~L~aL 425 (510)
T 3ul1_B 403 IEPLMNLL--SAKDTKIIQVILDAI 425 (510)
T ss_dssp HHHHHHGG--GCSCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHH
Confidence 66665544 334444444444433
No 3
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.3e-35 Score=267.03 Aligned_cols=281 Identities=21% Similarity=0.202 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhc
Q 015851 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (399)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~ 156 (399)
..+..|+|+|.+++.++++|+.+++.|++++|+.+|..+... .........++++++|+|+|.||+ .+++++..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~-~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM-YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhccccc-ccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345589999999999999999999999999999999632100 000001124589999999999999 556688877654
Q ss_pred -CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHH
Q 015851 157 -GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRT 233 (399)
Q Consensus 157 -~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~ 233 (399)
|+++.|+.+|.+.+. ++++.++++|.||+.. ++..+..+.+.|++|.|+++| ++.++.+++.|+++|+|
T Consensus 126 ~GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 126 KGCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 569999999997665 8999999999999974 567788888999999999974 66789999999999999
Q ss_pred hhcCChhhHHHHH-hcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHHhhcCCCh
Q 015851 234 LAFKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS 305 (399)
Q Consensus 234 L~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~ 305 (399)
|+.+.++++..+. ..|++|.|+.+|.++++ +++..|+++|.|++. .+++.+..+.+.|+++.|+.+|.+++.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 9986778888887 78999999999987654 599999999999996 568888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 306 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.++++|+++|+|++..+++++..+.+.|++|.|++++.++++.+++.|+++|.||+.+.+.+
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999778899999999999999999999999999999999999999998865
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=271.33 Aligned_cols=278 Identities=22% Similarity=0.212 Sum_probs=239.7
Q ss_pred HHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHh-cCcH
Q 015851 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD-NGAL 159 (399)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~-~~~i 159 (399)
.|+|+|.|++.++++|+.+.+.|++++|+.+|..+.... ........+.++++|+|+|.||+ .++.++..+.. .|++
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~-~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMY-GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhccc-ccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 899999999999999999999999999999995311000 00001113578999999999999 55567777765 4569
Q ss_pred HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcC
Q 015851 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 160 ~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~ 237 (399)
+.|+.+|.+.+. ++++.++|+|.||+.. ++..+..+.+.|+++.|+.+| .+.++.+++.++.+|+||+.+
T Consensus 246 p~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 246 RALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HHHHHGGGCSCH--------HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCH--------HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence 999999997665 8999999999999974 567888889999999999974 567899999999999999986
Q ss_pred ChhhHHHHH-hcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHHhhcCCChHHHH
Q 015851 238 NDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309 (399)
Q Consensus 238 ~~~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 309 (399)
.++++..+. ..|++|.|+.+|.++++ +++..|+++|+||+. .+++.+..+.+.|+++.|+.+|.+++..+++
T Consensus 318 ~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~ 397 (458)
T 3nmz_A 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397 (458)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHH
T ss_pred CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHH
Confidence 678888887 78999999999987654 599999999999996 5788899999999999999999999999999
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSV 368 (399)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (399)
+|+++|+|++..+++++..+.+.|+++.|++++.++++.+++.|+++|.||+.+.+.++
T Consensus 398 ~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 99999999997788999999999999999999999999999999999999999887653
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=262.99 Aligned_cols=339 Identities=17% Similarity=0.178 Sum_probs=260.3
Q ss_pred HhhhhhhHHHHhhhhhcchh----------hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCCh----------HHHHhcc
Q 015851 55 LLSEVSAQVNVLNTTFSWLE----------ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAV----------PALVKHL 113 (399)
Q Consensus 55 ~~~~~~~~~~~L~~~l~~~~----------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l----------~~L~~lL 113 (399)
......+.+|.|.+++...+ .+++.|.+|+|+|.|++.+ |+......+.|++ +.+++++
T Consensus 64 ~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (458)
T 3nmz_A 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQ 143 (458)
T ss_dssp HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34556777777777776322 3478999999999999994 7777777777877 6777777
Q ss_pred cCCC--CcccccC-CCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccC---ccccccHHHHHHHHH
Q 015851 114 QAPP--TSEADRN-LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS---NCSRAVNSVIRRAAD 187 (399)
Q Consensus 114 ~~~~--~~~~~~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~---~~~~~~~~~~~~a~~ 187 (399)
.+.. .+...++ +.+.+ ..+.+|+|+|+|++.++++|..+.+.|++++|+.+|....+. ........+++.++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~-~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~ 222 (458)
T 3nmz_A 144 EAHEPGMDQDKNPMPAPVE-HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222 (458)
T ss_dssp TTTSSSSCCCSCC--CCCT-TTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HhhccccccccCCccchhh-HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH
Confidence 7653 1100000 00011 234599999999998899999999999999999999642100 000001178999999
Q ss_pred HHHHHhhcCchhHHHHHhc-CChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHhh-cCCCHH
Q 015851 188 AITNLAHENSSIKTRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILML-RSEDSA 264 (399)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~ 264 (399)
+|.||+..++..+..+... |++|.|+.+|.+++++++..|+++|+||+.+ +++++..+.+.|++|.|+.+| .++++.
T Consensus 223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~ 302 (458)
T 3nmz_A 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHH
T ss_pred HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHH
Confidence 9999998777677666544 5699999999999999999999999999984 567889999999999999975 567889
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHH-HCCCcHHHHHhhcCCCh----HHHHHHHHHHHHhhc---cChhhHHHHHhcCCHH
Q 015851 265 IHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVR 336 (399)
Q Consensus 265 v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~v~ 336 (399)
++..|+++|+||+...++.+..+. ..|+++.|+.+|.+++. .++++|+++|.|++. .+++++..+.+.|+++
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~ 382 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH
Confidence 999999999999975566667776 78999999999987654 599999999999996 5788999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhccCCC--------CcchhHHHHHhhccccH-HHHHHHHhhhH
Q 015851 337 PLIEMLQSPDVQLREMSAFALGRLAQVITV--------SVLPAILIFIIINECQL-EVLAFVLSEMV 394 (399)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 394 (399)
.|+.+|.+++..+++.|+++|+|++..++. +.+|.++.++...+..+ +....+|..+.
T Consensus 383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999965442 35566555443333322 44555555544
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.9e-32 Score=264.18 Aligned_cols=289 Identities=20% Similarity=0.289 Sum_probs=254.6
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.+|.|..++ .+.+..++..|+|+|++++.+ ++++..+.+.|++++|+.+|...+... ....+++.++|
T Consensus 161 ~Gaip~Lv~LL--~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~-------~~~~~~~~a~~ 231 (529)
T 3tpo_A 161 GGAIPAFISLL--ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLST-------LACGYLRNLTW 231 (529)
T ss_dssp TTHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGG-------SCHHHHHHHHH
T ss_pred CCCHHHHHHHH--cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhH-------hHHHHHHHHHH
Confidence 34677787777 456778999999999999996 899999999999999999998765421 12367889999
Q ss_pred HHHHhcCCh-hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 139 ALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 139 ~L~~l~~~~-~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
+|.+++.+. .........++++.|+.++.+.+. +++..++|+|.+++...+.....+...|+++.|+.+|.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH--------HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH--------HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 999999443 333334446789999999987766 89999999999999877777777888999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
++++.++..++++|+|++.+++.....+++.|+++.|+.+|.++++.++..|+|+|+||+.+++.....+++.|+++.|+
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999998888889999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 298 GLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
.++.+++..++.+|+|+|+|++.+ +++....+.+.|+++.|+++|.+++++++..++++|.|+....+
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999865 45778889999999999999999999999999999999986443
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.1e-32 Score=262.42 Aligned_cols=308 Identities=21% Similarity=0.332 Sum_probs=263.6
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
+.++.|..++... +++.+|..|+|+|.+++.+ ++++..+++.|+++.|+.+|.+++. +++..|+++
T Consensus 117 g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a~~a 183 (528)
T 4b8j_A 117 GVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD------------DVREQAVWA 183 (528)
T ss_dssp TCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred CCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH------------HHHHHHHHH
Confidence 4677777777422 2378999999999999996 8999999999999999999998655 899999999
Q ss_pred HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
|++++ .++.++..+...|+++.|+.++....+. .++..++|+|.+|+...+.... ....++++.|+.++.+
T Consensus 184 L~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~-------~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~ 255 (528)
T 4b8j_A 184 LGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL-------SMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLIHS 255 (528)
T ss_dssp HHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCH-------HHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHTTC
T ss_pred HHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHHCC
Confidence 99999 7788999999999999999999544332 8999999999999976543333 4458999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (399)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (399)
+++.++..++++|++++.+.+.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.
T Consensus 256 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 335 (528)
T 4b8j_A 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLS 335 (528)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999876777778889999999999999999999999999999999888888888999999999999
Q ss_pred hhcCC-ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC---------CCc
Q 015851 299 LLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT---------VSV 368 (399)
Q Consensus 299 lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~ 368 (399)
+|.++ ++.++.+|+|+|+|++.+++.....+.+.|+++.|+.++.++++.++..|+++|.+++.... .+.
T Consensus 336 lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 415 (528)
T 4b8j_A 336 LLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 415 (528)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 99988 89999999999999998777888899999999999999998999999999999999998843 235
Q ss_pred chhHHHHHhhccccHHHHHHHHh
Q 015851 369 LPAILIFIIINECQLEVLAFVLS 391 (399)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~l~ 391 (399)
++.++.++.. ...++...++.
T Consensus 416 i~~L~~lL~~--~d~~v~~~al~ 436 (528)
T 4b8j_A 416 IKPLCDLLIC--PDIRIVTVCLE 436 (528)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHH
Confidence 5665554433 33344444333
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=8.3e-32 Score=260.46 Aligned_cols=289 Identities=20% Similarity=0.292 Sum_probs=253.9
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.+|.|..++ .+.+..++..|+|+|++++.+ +..+..+.+.|++++|+.+|...+.... ...+++.++|
T Consensus 142 ~GaIp~Lv~lL--~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~-------~~~~~~~a~~ 212 (510)
T 3ul1_B 142 GGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL-------ACGYLRNLTW 212 (510)
T ss_dssp TTHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS-------CHHHHHHHHH
T ss_pred CCCHHHHHHHH--cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh-------hHHHHHHHHH
Confidence 45788888888 456778999999999999996 8899999999999999999987654211 2367889999
Q ss_pred HHHHhcCCh-hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 139 ALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 139 ~L~~l~~~~-~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
+|.+++.+. .........++++.|++++.+.+. +++..++|+|.+|+.........+...|+++.|+.+|.
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--------~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH--------HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 999999443 333334446789999999987766 89999999999999877777777888899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
++++.++..++++|+|++.+++..+..+++.|+++.|+.+|.++++.++..|+|+|+||+.+++..+..+.+.|+++.|+
T Consensus 285 ~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv 364 (510)
T 3ul1_B 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999998888899999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 298 GLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
.++.+++..++.+|+|+|+|++.. +++....+.+.|+++.|++++.+++++++..++++|.|+....+
T Consensus 365 ~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999975 45777889999999999999999999999999999999987544
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7e-32 Score=267.25 Aligned_cols=287 Identities=16% Similarity=0.146 Sum_probs=246.3
Q ss_pred hhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChh------------------------------HH---HHHHh
Q 015851 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE------------------------------VV---NWIVE 102 (399)
Q Consensus 56 ~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~------------------------------~~---~~~~~ 102 (399)
.....+++|.|..++. +.+..++..|+++|.|++.+.+ .+ ..+++
T Consensus 416 lv~d~g~Ip~LV~LL~--s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve 493 (810)
T 3now_A 416 LIEDKASIHALMDLAR--GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493 (810)
T ss_dssp HHHCHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHhC--CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence 3444678888888884 4567789999999999998531 22 67889
Q ss_pred CCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (399)
Q Consensus 103 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~ 182 (399)
.|++|.|+++|+++++ .++++|+|+|+|++.+++++..+++.|++++|+.+|.+... ..+
T Consensus 494 aGaVp~LV~LL~s~s~------------~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~--------~~k 553 (810)
T 3now_A 494 EGITTALCALAKTESH------------NSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE--------KGK 553 (810)
T ss_dssp TTHHHHHHHHHTCCCH------------HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH--------HHH
T ss_pred CcCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH--------HHH
Confidence 9999999999998766 89999999999999888999999999999999999988765 889
Q ss_pred HHHHHHHHHHhhcCchhHHH--HHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 183 RRAADAITNLAHENSSIKTR--VRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
+.++|+|.+|+......... ....+++|.|+.+|.++. ...+..|+++|.||+.++++.+..+++.|+++.|+.++.
T Consensus 554 ~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~ 633 (810)
T 3now_A 554 RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633 (810)
T ss_dssp HHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 99999999999643321110 012469999999998764 455678999999999977888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHH-CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRP 337 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~g~v~~ 337 (399)
++++.++..|+++|+||+.+ +..+..+.+ .|.++.|+.++.+.+..++.+|+|+|+|++.+++...+.+.+ .|+++.
T Consensus 634 s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~ 712 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI 712 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999976 556666665 689999999999999999999999999999867888888888 899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 338 LIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
|+.++.+++.++++.|+++|.|++..++
T Consensus 713 Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999998654
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.4e-31 Score=257.26 Aligned_cols=309 Identities=18% Similarity=0.265 Sum_probs=264.6
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.++.|..++... +++.+|..|+|+|.+++.+ ++.+..+++.|+++.|+.+|.+++. +++..|++
T Consensus 129 ~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~ 195 (530)
T 1wa5_B 129 AGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV------------EVKEQAIW 195 (530)
T ss_dssp TTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH------------HHHHHHHH
T ss_pred CCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHH
Confidence 45677777777422 2678999999999999995 7888899999999999999997655 89999999
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
+|++++ .++.++..+...|+++.|+.++.+.+. +++..++|+|.+|+.............++++.|+.++.
T Consensus 196 aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~ 267 (530)
T 1wa5_B 196 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 267 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--------HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT
T ss_pred HHHHHhCCCccchHHHHHcCcHHHHHHHhccCCH--------HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc
Confidence 999999 668899999999999999999987443 89999999999999755222234556899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
++++.++..++++|++|+.+.++....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|+
T Consensus 268 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 347 (530)
T 1wa5_B 268 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR 347 (530)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHH
Confidence 99999999999999999987777888889999999999999999999999999999999988788888889999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC-----------
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV----------- 366 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------- 366 (399)
.+|.++++.++..|+++|+|++.++++....+.+.|+++.|+.++.++++.++..|+++|++++.....
T Consensus 348 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~ 427 (530)
T 1wa5_B 348 LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 427 (530)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHC
Confidence 999999999999999999999987788888888999999999999989999999999999999986432
Q ss_pred CcchhHHHHHhhccccHHHHHHHHh
Q 015851 367 SVLPAILIFIIINECQLEVLAFVLS 391 (399)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (399)
+.++.++..+... ..++...++.
T Consensus 428 ~~l~~L~~ll~~~--~~~v~~~al~ 450 (530)
T 1wa5_B 428 GCIKPLCDLLEIA--DNRIIEVTLD 450 (530)
T ss_dssp TCHHHHHHHTTTC--CHHHHHHHHH
T ss_pred CCHHHHHHHHhCC--CHHHHHHHHH
Confidence 3566665554433 3344444333
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=6.8e-31 Score=255.92 Aligned_cols=297 Identities=19% Similarity=0.261 Sum_probs=257.5
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-h-hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
..++.|...+ .++++.+|..|++.|.+++.. + .....+++.|+++.|+++|.+++. +.++..|++
T Consensus 74 ~~l~~lv~~L--~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-----------~~v~~~A~~ 140 (528)
T 4b8j_A 74 ESLPAMIGGV--YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-----------PQLQFEAAW 140 (528)
T ss_dssp -CHHHHHHHH--TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-----------HHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-----------HHHHHHHHH
Confidence 3456666666 345778999999999999764 3 677888999999999999988652 289999999
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL- 216 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll- 216 (399)
+|++++ .+++.+..+.+.|+++.|+.+|.+.+. +++..++|+|++++.+.+..+..+...|+++.|+.++
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence 999999 569999999999999999999998655 8999999999999988888888888899999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
.+.++.++..++++|++|+.+.+.. ......++++.|+.++.+++++++..|+++|++++...+.....+++.|+++.|
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L 291 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence 6678999999999999999854333 334457899999999999999999999999999998777777888999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhccCCC--------C
Q 015851 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQVITV--------S 367 (399)
Q Consensus 297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~--------~ 367 (399)
+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|.|++...+. +
T Consensus 292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~ 371 (528)
T 4b8j_A 292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG 371 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence 9999999999999999999999987788888899999999999999988 999999999999999975442 4
Q ss_pred cchhHHHHHhhc
Q 015851 368 VLPAILIFIIIN 379 (399)
Q Consensus 368 ~~~~~~~~~~~~ 379 (399)
++|.++..+...
T Consensus 372 ~i~~L~~lL~~~ 383 (528)
T 4b8j_A 372 IIGPLVNLLQTA 383 (528)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHhcC
Confidence 667776666444
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.98 E-value=1.3e-29 Score=246.95 Aligned_cols=298 Identities=18% Similarity=0.277 Sum_probs=257.9
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCC-CCcccccCCCcchHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~-~~~~~~~~~~~~~~~~~~~a 136 (399)
...++.|...+. ++++.+|..|++.|.++... ......+++.|+++.|+++|.++ +. .++..|
T Consensus 86 ~~~i~~lv~~L~--s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------------~v~~~A 151 (530)
T 1wa5_B 86 QQELPQMTQQLN--SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------------MLQLEA 151 (530)
T ss_dssp -CCHHHHHHHHS--CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------------HHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------------HHHHHH
Confidence 344666666663 45678999999999999763 45567788999999999999886 33 899999
Q ss_pred HHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 137 ~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (399)
+++|++++ .+++.+..+++.|+++.|+.+|.+.+. ++++.++++|++++...+..+..+...|+++.|+.+
T Consensus 152 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 99999999 678889999999999999999997655 899999999999998777888888889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHH
Q 015851 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (399)
+.+.++.++..++++|++|+.+...........++++.|+.++.++++.++..|+++|++++...+.....+++.|+++.
T Consensus 224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 303 (530)
T 1wa5_B 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303 (530)
T ss_dssp GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH
Confidence 99999999999999999999854244445556789999999999999999999999999999877777888899999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC--------CC
Q 015851 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT--------VS 367 (399)
Q Consensus 296 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~ 367 (399)
|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++...+ .+
T Consensus 304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~ 383 (530)
T 1wa5_B 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 383 (530)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999999999999999999998777888888999999999999999999999999999999997543 24
Q ss_pred cchhHHHHHhhc
Q 015851 368 VLPAILIFIIIN 379 (399)
Q Consensus 368 ~~~~~~~~~~~~ 379 (399)
++|.++..+...
T Consensus 384 ~l~~L~~lL~~~ 395 (530)
T 1wa5_B 384 LIPPLVKLLEVA 395 (530)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHhcC
Confidence 677776666433
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.98 E-value=4.5e-31 Score=251.58 Aligned_cols=291 Identities=16% Similarity=0.192 Sum_probs=235.7
Q ss_pred HHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (399)
Q Consensus 63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 141 (399)
++.|..++. +.++.+|..|+++|.+++.+ +..+..+++.|++|.|+++|++++. +++..|+++|.
T Consensus 4 l~~lv~~L~--s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~~aL~ 69 (457)
T 1xm9_A 4 IPKAVQYLS--SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAAGALR 69 (457)
T ss_dssp HHHHHHHHH--SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence 445555553 34667899999999999985 6677799999999999999997655 89999999999
Q ss_pred Hhc-CChhhHHHHHhcCcHHHHHHHHh-ccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--
Q 015851 142 LLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-- 217 (399)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~-~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-- 217 (399)
||+ .+++++..+++.|+++.|+++|. +.+. ++++.++|+|+||+.+ +..+..+.. |++|.|+.++.
T Consensus 70 nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~ 139 (457)
T 1xm9_A 70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIP 139 (457)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhcc
Confidence 999 56999999999999999999998 4444 8999999999999976 667777888 99999999993
Q ss_pred ------C--------CCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CCHHHHHHhhcC------CCHHHHHHHHHHHHHh
Q 015851 218 ------F--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGVIGNL 276 (399)
Q Consensus 218 ------~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~L~~l 276 (399)
+ .++.+++.|+++|+||+.+ ++++..+.+. |+++.|+.+|.+ .+..+...++++|.|+
T Consensus 140 ~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 140 FSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp HHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred ccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 2 2467788999999999985 8889999997 999999999985 4567888999999998
Q ss_pred hcCC--------------------------------------------------hhHHHHHHHCCCcHHHHHhhcC-CCh
Q 015851 277 VHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS-CCS 305 (399)
Q Consensus 277 ~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~ 305 (399)
+... +...+.+++.|+++.++.+|.+ .++
T Consensus 219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 298 (457)
T 1xm9_A 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298 (457)
T ss_dssp TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH
Confidence 7310 0111233445667888899874 468
Q ss_pred HHHHHHHHHHHHhhccChhh-----HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC------cchhHHH
Q 015851 306 ESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS------VLPAILI 374 (399)
Q Consensus 306 ~v~~~a~~~L~~l~~~~~~~-----~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~ 374 (399)
.+++.|+|+|+|++.++... +..+.+.|++|.|++++.+++.++++.|+++|.|++.+.... .+|.++.
T Consensus 299 ~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~ 378 (457)
T 1xm9_A 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTR 378 (457)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHH
Confidence 99999999999999764332 233446899999999999999999999999999999876542 5666666
Q ss_pred HHhh
Q 015851 375 FIII 378 (399)
Q Consensus 375 ~~~~ 378 (399)
.+..
T Consensus 379 lL~~ 382 (457)
T 1xm9_A 379 LLTS 382 (457)
T ss_dssp TTTS
T ss_pred hccC
Confidence 5543
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.98 E-value=4.2e-31 Score=261.68 Aligned_cols=285 Identities=18% Similarity=0.203 Sum_probs=246.9
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
..+.+|.|..++. +.++.+|..|+|+|.|++.+++++..+++.|++++|+.+|.+.+. ..++.|+|
T Consensus 493 eaGaVp~LV~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~------------~~k~~Aa~ 558 (810)
T 3now_A 493 NEGITTALCALAK--TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE------------KGKRHATQ 558 (810)
T ss_dssp HTTHHHHHHHHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH------------HHHHHHHH
T ss_pred HCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH------------HHHHHHHH
Confidence 4468888888884 456789999999999999998999999999999999999987655 78999999
Q ss_pred HHHHhc--CChhhHHH-HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851 139 ALGLLA--VKPEHQQL-IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 139 ~L~~l~--~~~~~~~~-i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (399)
+|++++ .+|+..-. ....|++++|+.+|...... ..+..++++|.||+..++..+..+...|+++.|+.+
T Consensus 559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~-------l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~L 631 (810)
T 3now_A 559 ALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTA-------LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631 (810)
T ss_dssp HHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCH-------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 999998 34432110 01235899999999754321 334689999999998777888888899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-CCCc
Q 015851 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGAL 293 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l 293 (399)
+.++++.+++.|+++|+||+. +++....+.+ .|.++.|+.++.+++.+++..|+|+|+|++.+++...+.+++ .|++
T Consensus 632 L~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I 710 (810)
T 3now_A 632 LMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL 710 (810)
T ss_dssp HHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCH
Confidence 999999999999999999998 5777777775 789999999999999999999999999999866777888888 8999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC---CHHHHHHHHHHHHHhhccCC
Q 015851 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---DVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~ 365 (399)
+.|+.+|.+++.+++..|+|+|.|++..+++....+.+.|++++|..+++.+ +.++.+.|..+|.++.....
T Consensus 711 ~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999987788899999999999999999654 79999999999999986544
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=9e-30 Score=223.66 Aligned_cols=245 Identities=31% Similarity=0.371 Sum_probs=228.8
Q ss_pred CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (399)
Q Consensus 104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~ 182 (399)
|.++.|+++|.+++. +++..|+++|.+++ .+++++..+.+.|+++.|+.++.+.+. +++
T Consensus 2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~ 61 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ 61 (252)
T ss_dssp CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence 678999999998765 89999999999999 666799999999999999999998765 899
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
..++++|.+++..++..+..+...|+++.++.++.++++.++..++++|++++..+++.+..+.+.|+++.|+.++.+++
T Consensus 62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99999999999877888888999999999999999999999999999999999778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll 342 (399)
+.++..++++|++++..++..+..+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|++++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999987788878899999999999999999999999999999999987788889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851 343 QSPDVQLREMSAFALGRLAQVITVSV 368 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (399)
.++++.+++.|+++|.|++...++..
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCBCCC
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999887653
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=1.6e-29 Score=241.18 Aligned_cols=310 Identities=19% Similarity=0.259 Sum_probs=261.4
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
+.++.|...+.. ++++.+|..|+++|.+++.+ ++....+++.|+++.|+++|.+++. ++|..|+++
T Consensus 64 ~~i~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~a~~~ 130 (450)
T 2jdq_A 64 GVVARFVEFLKR-KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQAVWA 130 (450)
T ss_dssp THHHHHHHHHTC-TTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred CcHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHHHHHH
Confidence 677777777742 22678999999999999985 7888888899999999999998655 899999999
Q ss_pred HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHHhhc
Q 015851 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~ 217 (399)
|++++ .+++.+..+.+.|+++.|+.++.+..+. +++..++++|++++... +.....+ ..++++.|+.++.
T Consensus 131 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 131 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL-------TMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLF 202 (450)
T ss_dssp HHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH-------HHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTT
T ss_pred HHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHc
Confidence 99999 6678999999999999999999863322 89999999999999654 3322222 2789999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
++++.++..++++|.+++.+.++....+...|+++.|+.++.++++.++..|+++|++++.+.+.....+.+.|+++.|+
T Consensus 203 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 282 (450)
T 2jdq_A 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282 (450)
T ss_dssp CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence 99999999999999999987677788888899999999999999999999999999999988777777888899999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC-C--------Cc
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT-V--------SV 368 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~--------~~ 368 (399)
.++.++++.++..|+++|+|++.++++....+.+.|+++.|+.++.++++.++..|+++|++++.... . +.
T Consensus 283 ~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 362 (450)
T 2jdq_A 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362 (450)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 99999999999999999999998778888888899999999999999999999999999999997632 1 35
Q ss_pred chhHHHHHhhccccHHHHHHHHhhh
Q 015851 369 LPAILIFIIINECQLEVLAFVLSEM 393 (399)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (399)
+|.++..+. +...++...++..+
T Consensus 363 i~~L~~ll~--~~~~~v~~~a~~aL 385 (450)
T 2jdq_A 363 IKPLCDLLT--VMDSKIVQVALNGL 385 (450)
T ss_dssp HHHHHHGGG--SSCHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHH
Confidence 566555443 33344444444433
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=4.7e-30 Score=246.30 Aligned_cols=297 Identities=19% Similarity=0.223 Sum_probs=238.5
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a 136 (399)
+...-++.|..++. +.+..+|..|+++|.+++. +++++..+++.|+||.|+++|.+++. +++++|
T Consensus 45 ~~~~~i~~LV~~L~--s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A 110 (584)
T 3l6x_A 45 WRQPELPEVIAMLG--FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA 110 (584)
T ss_dssp CCCCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred cccccHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence 33445666777663 4567789999999999997 69999999999999999999998765 899999
Q ss_pred HHHHHHhcC--ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851 137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (399)
Q Consensus 137 ~~~L~~l~~--~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (399)
+++|.||+. +++++..+.+.|+|+.|+.+|.+..+. ++++.++++|+||+. ++..+..+.. +++|.|+.
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence 999999994 599999999999999999999975432 889999999999996 5667777774 57999999
Q ss_pred hhc------------------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CCHHHHHHhhcC------CCHHHHHHH
Q 015851 215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA 269 (399)
Q Consensus 215 ll~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a 269 (399)
++. ..++.++..|+++|.||+..+++++..+++. |+++.|+.++++ .+...++.|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 871 2357999999999999999777788888885 557899999874 466899999
Q ss_pred HHHHHHhhcCChh-------------------------HHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccCh
Q 015851 270 VGVIGNLVHSSPN-------------------------IKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 270 ~~~L~~l~~~~~~-------------------------~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
+++|.||+..... ....+++.++++.++.+|. +.++.+++.|+++|.|++.+..
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999854110 0011112234667888886 5678999999999999997642
Q ss_pred ----hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC------cchhHHHHHh
Q 015851 324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS------VLPAILIFII 377 (399)
Q Consensus 324 ----~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~~~~ 377 (399)
..+..+.+.+++|.|+++|.+++..+++.|+++|+||+.+..++ .+|.++..+.
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc
Confidence 23345556889999999999999999999999999999988764 4555555443
No 18
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.5e-29 Score=228.56 Aligned_cols=249 Identities=18% Similarity=0.222 Sum_probs=212.9
Q ss_pred hhhhHHHHhhhhhcc---------hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCC
Q 015851 58 EVSAQVNVLNTTFSW---------LEADRAAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLK 126 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~---------~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~ 126 (399)
...+.++.|..++.. ...++.+|..|+|+|.+++.+ +.++..+... |+||.|+++|.+++.
T Consensus 70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~-------- 141 (354)
T 3nmw_A 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-------- 141 (354)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH--------
T ss_pred HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH--------
Confidence 344566666666631 224577999999999999986 5577777655 559999999997665
Q ss_pred cchHHHHHHHHHHHHHhcC--ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH
Q 015851 127 PFEHEVEKGSAFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (399)
Q Consensus 127 ~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 204 (399)
++++.|+++|.||+. +++++..+.+.|+++.|+++|.+..+. ++++.++++|+||+.+++..+..+.
T Consensus 142 ----~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-------~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 142 ----DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-------STLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp ----HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHccChhhhHHHH
Confidence 899999999999994 578999999999999999986544332 8899999999999976766676676
Q ss_pred -hcCChHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 205 -MEGGIPPLVELLEFTDT----KVQRAAAGALRTLAF---KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (399)
Q Consensus 205 -~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (399)
..|+++.|+.+|.++++ +++..|+++|+||+. .+++++..+.+.|+++.|+.+|.+++.+++..|+++|+|+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 68999999999987654 599999999999996 5789999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh
Q 015851 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (399)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 325 (399)
+..+++.+..+++.|+++.|+.+|.+++..++++|+++|.|++...+..
T Consensus 291 a~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 291 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp TSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred hCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9777888999999999999999999999999999999999999876543
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=9.3e-29 Score=235.89 Aligned_cols=284 Identities=21% Similarity=0.274 Sum_probs=249.5
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.++.|..++. ++++.+|..|+++|.+++.+ +..+..+.+.|+++.|+.++.++.. ++++..+++
T Consensus 106 ~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-----------~~v~~~a~~ 172 (450)
T 2jdq_A 106 AGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-----------LTMTRNAVW 172 (450)
T ss_dssp TTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-----------HHHHHHHHH
T ss_pred CCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-----------HHHHHHHHH
Confidence 567888888874 45788999999999999996 7888899999999999999985322 289999999
Q ss_pred HHHHhcCC--hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 015851 139 ALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (399)
Q Consensus 139 ~L~~l~~~--~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (399)
+|++++.+ +.....+. .++++.|+.++.+.+. +++..++|+|.+++...+.....+...++++.|+.++
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 243 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDT--------DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCH--------HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCH--------HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH
Confidence 99999943 44333333 7899999999986654 8999999999999976666666677889999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|
T Consensus 244 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 99999999999999999999777777788889999999999999999999999999999998778888888899999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 297 IGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 297 ~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+.+|.++++.++.+|+++|+|++.. +++..+.+.+.|+++.|+.++.+++++++..|+++|.+++...+
T Consensus 324 ~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 9999999999999999999999975 56777888899999999999999999999999999999997654
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3.2e-29 Score=238.85 Aligned_cols=290 Identities=16% Similarity=0.167 Sum_probs=237.2
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhccc-CCCCcccccCCCcchHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQ-APPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~~~~~a 136 (399)
..+.+|.|..++. +.++.++..|+++|.+++.+ ++++..+++.|++|.|+++|. +.+. ++++++
T Consensus 42 ~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~------------~~~~~a 107 (457)
T 1xm9_A 42 QLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA------------EIQKQL 107 (457)
T ss_dssp HTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH------------HHHHHH
T ss_pred HcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH------------HHHHHH
Confidence 4567888888884 45778899999999999996 999999999999999999998 5444 899999
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHHHhc--------cccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc-C
Q 015851 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKR--------HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-G 207 (399)
Q Consensus 137 ~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~--------~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~ 207 (399)
+|+|+||+.+++++..+.+ |+++.|+++|.. ...........++.+.++|+|+||+.. +..+..+.+. |
T Consensus 108 ~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g 185 (457)
T 1xm9_A 108 TGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSG 185 (457)
T ss_dssp HHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTT
T ss_pred HHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCC
Confidence 9999999977899999999 999999999942 111000001127888999999999965 7777777776 8
Q ss_pred ChHHHHHhhcC---------------------------------------------------------------------
Q 015851 208 GIPPLVELLEF--------------------------------------------------------------------- 218 (399)
Q Consensus 208 ~i~~L~~ll~~--------------------------------------------------------------------- 218 (399)
+++.|+.+|.+
T Consensus 186 ~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (457)
T 1xm9_A 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCP 265 (457)
T ss_dssp HHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------
T ss_pred CHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCC
Confidence 88888877653
Q ss_pred ------------------------------CCHHHHHHHHHHHHHhhcCChhh-----HHHHHhcCCHHHHHHhhcCCCH
Q 015851 219 ------------------------------TDTKVQRAAAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSEDS 263 (399)
Q Consensus 219 ------------------------------~~~~v~~~a~~~L~~L~~~~~~~-----~~~~~~~~~~~~L~~ll~~~~~ 263 (399)
.++.+++.|+++|+||+.++... +..+.+.|++|.|+.+|.+++.
T Consensus 266 ~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~ 345 (457)
T 1xm9_A 266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345 (457)
T ss_dssp CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCH
T ss_pred ccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCH
Confidence 13566777899999999754332 2233468999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh------HHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 015851 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS------ESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (399)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~ 337 (399)
+++..|+|+|.|++.+ +.. ..++..|+++.|+++|..+++ ++...++++|.|+...+++....+.+.|+++.
T Consensus 346 ~v~~~A~~aL~nls~~-~~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~ 423 (457)
T 1xm9_A 346 DVVRSGASLLSNMSRH-PLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423 (457)
T ss_dssp HHHHHHHHHHHHHHTS-GGG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-HHH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 9999999999999974 455 445566899999999987643 68889999999999888889999999999999
Q ss_pred HHHhhCCC-CHHHHHHHHHHHHHhhccCCC
Q 015851 338 LIEMLQSP-DVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 338 L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~ 366 (399)
|+.++.++ +.++++.|.++|.++..+.+-
T Consensus 424 L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 424 IINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 99999998 999999999999999977653
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=8.3e-29 Score=217.73 Aligned_cols=240 Identities=24% Similarity=0.347 Sum_probs=219.6
Q ss_pred CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (399)
Q Consensus 104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~ 182 (399)
...+.+...|.+++. +++..|+++|.++. .+++.+..+.+.|+++.|+++|.+.+. +++
T Consensus 12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence 467889999998887 78889999997766 677888899999999999999998764 899
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
..++++|.+++..++..+..+...|+++.|+.+|.++++.++..++++|++|+.+.+.....+.+.|+++.|+.++.+++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999878888888999999999999999999999999999999999854444488999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll 342 (399)
+.++..|+++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|+|++..+++.+..+.+.|+++.|++++
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 99999999999999987788888889999999999999999999999999999999987888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcc
Q 015851 343 QSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~ 363 (399)
.++++.+++.|+++|.||+.+
T Consensus 232 ~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 232 SHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp TCSSSHHHHTHHHHHHTTC--
T ss_pred CCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999853
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=3.6e-28 Score=213.39 Aligned_cols=239 Identities=33% Similarity=0.403 Sum_probs=217.9
Q ss_pred HHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (399)
Q Consensus 63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 141 (399)
++.|...+. +.++.+|..|+++|.+++.+ ++++..+.+.|+++.|+++|.+++. +++..++++|+
T Consensus 4 i~~L~~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~------------~v~~~a~~~L~ 69 (252)
T 4hxt_A 4 VEKLVKLLT--STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS------------EVQKEAARALA 69 (252)
T ss_dssp HHHHHHHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH------------HHHHHHHHHHH
Confidence 555666663 34578999999999999986 6799999999999999999998765 89999999999
Q ss_pred Hhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (399)
Q Consensus 142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (399)
+++ .+++++..+.+.|+++.++.++.+.+. +++..++++|.+++..++..+..+...|+++.|+.++.+++
T Consensus 70 ~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 70 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDS--------EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 999 559999999999999999999997654 89999999999999878888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 300 (399)
+.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|+.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999997788888899999999999999999999999999999999987788888999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhhccCh
Q 015851 301 SSCCSESQREAALLLGQFAATDS 323 (399)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~ 323 (399)
.++++.++..|+++|+|++...+
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CCCcHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999997543
No 23
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=9.1e-28 Score=230.47 Aligned_cols=292 Identities=17% Similarity=0.173 Sum_probs=228.4
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 135 (399)
...+.+|.|..++. +.+..+|..|+++|.||+.+ ++++..+++.|+|+.|+.+|.+... .+++++
T Consensus 87 ~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-----------~~~~e~ 153 (584)
T 3l6x_A 87 RKLKGIPVLVGLLD--HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-----------MDLTEV 153 (584)
T ss_dssp HHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-----------HHHHHH
T ss_pred HHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-----------HHHHHH
Confidence 34567888888884 45778999999999999983 8999999999999999999997433 178999
Q ss_pred HHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccc---cC-------ccccccHHHHHHHHHHHHHHhhcCchhHHHHHh
Q 015851 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM---DS-------NCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (399)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~---~~-------~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (399)
++++|++|+.+++++..|++ ++++.|++++.... .. .......++++.++++|.||+..++..+..+..
T Consensus 154 aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~ 232 (584)
T 3l6x_A 154 ITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE 232 (584)
T ss_dssp HHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999988999999996 57999999873110 00 000001278888888888888766555555554
Q ss_pred cC-ChHHHHH----------------------------------------------------------------------
Q 015851 206 EG-GIPPLVE---------------------------------------------------------------------- 214 (399)
Q Consensus 206 ~~-~i~~L~~---------------------------------------------------------------------- 214 (399)
.+ +++.|+.
T Consensus 233 ~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~ 312 (584)
T 3l6x_A 233 CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRI 312 (584)
T ss_dssp STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHH
T ss_pred cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHH
Confidence 32 2334433
Q ss_pred ---hhc-CCCHHHHHHHHHHHHHhhcCCh----hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 215 ---LLE-FTDTKVQRAAAGALRTLAFKND----ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 215 ---ll~-~~~~~v~~~a~~~L~~L~~~~~----~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
+|. +.++.+++.|+++|.||+.+.. ..+..+.+.+++|.|+.+|.++++.++..|+++|+||+.+. ..+ .
T Consensus 313 Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~~~-~ 390 (584)
T 3l6x_A 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNK-E 390 (584)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-SCH-H
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-hHH-H
Confidence 332 2346777888888888876432 22334455788999999999999999999999999999764 444 4
Q ss_pred HHHCCCcHHHHHhhcCC--------ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC--CHHHHHHHHHH
Q 015851 287 VLAAGALQPVIGLLSSC--------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFA 356 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~v~~~a~~~ 356 (399)
++..|+++.|+.+|.++ +.++...|+++|.|++..++++++.+.+.|+++.|+.++.++ .+.+++.|+++
T Consensus 391 ~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~v 470 (584)
T 3l6x_A 391 LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV 470 (584)
T ss_dssp HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHH
Confidence 55789999999999875 457889999999999988899999999999999999999876 89999999999
Q ss_pred HHHhhccCC
Q 015851 357 LGRLAQVIT 365 (399)
Q Consensus 357 L~~l~~~~~ 365 (399)
|+++..+.+
T Consensus 471 L~nl~~~~e 479 (584)
T 3l6x_A 471 LQTIWGYKE 479 (584)
T ss_dssp HHHHHTSHH
T ss_pred HHHHHcCHH
Confidence 999997555
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=5.4e-28 Score=212.52 Aligned_cols=227 Identities=28% Similarity=0.393 Sum_probs=207.5
Q ss_pred hhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851 74 EADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~ 151 (399)
++++++|..|+++|.++.. +++.+..+.+.|+++.|+++|.+++. +++..|+++|++++ .+++++.
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE------------QILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH------------HHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCHHHHH
Confidence 4567789999999988666 58888899999999999999998765 89999999999999 5899999
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (399)
.+.+.|+++.|+.+|.+.+. +++..++++|++++...+.....+...|+++.|+.+|.++++.++..++++|
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 162 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNE--------QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCH--------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999998655 8999999999999976555447788899999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (399)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (399)
++|+.+.++....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|+.++.++++.++.+|
T Consensus 163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 163 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 99999778888889999999999999999999999999999999998788888899999999999999999999999999
Q ss_pred HHHHHHhhc
Q 015851 312 ALLLGQFAA 320 (399)
Q Consensus 312 ~~~L~~l~~ 320 (399)
+++|+|++.
T Consensus 243 ~~~L~~l~~ 251 (252)
T 4db8_A 243 QEALEKLQS 251 (252)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999999974
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=1.1e-26 Score=226.12 Aligned_cols=294 Identities=22% Similarity=0.284 Sum_probs=251.1
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.++.|..++. ++++.+|..|+.+|.+++.++..+..+... |+++.|+++|.+.+. ++++..+++
T Consensus 16 ~~~i~~Lv~lL~--~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~-----------~~~~~~a~~ 82 (529)
T 1jdh_A 16 TRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCTAG 82 (529)
T ss_dssp -CHHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCC-----------HHHHHHHHH
T ss_pred HhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCC-----------HHHHHHHHH
Confidence 445677777663 567889999999999999998888777765 899999999975422 278999999
Q ss_pred HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
+|.+++.+++++..+.+.|+++.|+.++.+.++ +++..++++|.+++..++..+..+...|+++.|+.++.+
T Consensus 83 ~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 83 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence 999999888899999999999999999998664 899999999999998877778888889999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
+++.++..++.+|.+++.++++++..+.+.|+++.|+.+++++ +...+..++.+|++++.+ +..+..+.+.|+++.|+
T Consensus 155 ~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~ 233 (529)
T 1jdh_A 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALG 233 (529)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHH
Confidence 9999999999999999998889999999999999999999865 456777899999999964 67788899999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC--------CCcc
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT--------VSVL 369 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~~~ 369 (399)
.++.++++.++..++++|.|++...+... ...|+++.|++++.+++++++..|+++|++++.+.+ .+.+
T Consensus 234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 310 (529)
T 1jdh_A 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred HHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Confidence 99999999999999999999997543211 124789999999999999999999999999998654 2355
Q ss_pred hhHHHHHhh
Q 015851 370 PAILIFIII 378 (399)
Q Consensus 370 ~~~~~~~~~ 378 (399)
+.++..+..
T Consensus 311 ~~L~~ll~~ 319 (529)
T 1jdh_A 311 EALVRTVLR 319 (529)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666655543
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=1.6e-25 Score=217.93 Aligned_cols=296 Identities=21% Similarity=0.257 Sum_probs=244.8
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
++.++.|.+.+.. ++++.++..|+++|.+++.+++++..+.+.|+++.|+++|.++++ +++..|+++
T Consensus 58 ~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------------~v~~~a~~~ 124 (529)
T 1jdh_A 58 PQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYAITT 124 (529)
T ss_dssp HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred cchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHHHH
Confidence 4567777776631 236778999999999999998899999999999999999998665 899999999
Q ss_pred HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
|.+++ .++..+..+.+.|+++.|+.++.+.+. +++..++.+|.+++..++..+..+...|+++.++.++++
T Consensus 125 L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~ 196 (529)
T 1jdh_A 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196 (529)
T ss_dssp HHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999 557788889999999999999997654 888889999999998888888888889999999999987
Q ss_pred CC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh---------------------------------------h
Q 015851 219 TD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM---------------------------------------L 258 (399)
Q Consensus 219 ~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l---------------------------------------l 258 (399)
++ ...+..++.+|++++. .++++..+.+.|+++.|+.+ +
T Consensus 197 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll 275 (529)
T 1jdh_A 197 YTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH
Confidence 65 5667778888999987 57777777777766555544 4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChh---hHHHHHhcC
Q 015851 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSD---CKVHIVQRG 333 (399)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g 333 (399)
.+++++++..|+++|++++..++..+..+.+.|+++.|+.+|.+ .++.++..|+++|+|++..+++ .+..+.+.|
T Consensus 276 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~ 355 (529)
T 1jdh_A 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC
Confidence 55677888888889999987767788889999999999999975 3479999999999999876443 467888999
Q ss_pred CHHHHHHhhCCCC-HHHHHHHHHHHHHhhccCCC-------CcchhHHHHHh
Q 015851 334 AVRPLIEMLQSPD-VQLREMSAFALGRLAQVITV-------SVLPAILIFII 377 (399)
Q Consensus 334 ~v~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~ 377 (399)
+++.|++++.+++ +.++..++++|+|++....+ +.+|.++..+.
T Consensus 356 ~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred ChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHH
Confidence 9999999998876 69999999999999986543 34566555543
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=7.7e-26 Score=225.18 Aligned_cols=294 Identities=21% Similarity=0.274 Sum_probs=251.3
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.++.|..++. ++++.+|..|+.+|.+++.+...+..++.. |+++.|+++|.+... ++++..|+.
T Consensus 13 ~g~i~~Lv~lL~--~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~-----------~~~~~~A~~ 79 (644)
T 2z6h_A 13 TRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCTAG 79 (644)
T ss_dssp TTTHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-----------HHHHHHHHH
T ss_pred hchHHHHHHHHc--CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-----------HHHHHHHHH
Confidence 345666777663 467889999999999999987777777765 899999999986532 289999999
Q ss_pred HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
+|.+++.+++++..+.+.|+++.|+.+|.+.+. .++..++++|.+++...+..+..+...|+++.|+.+|.+
T Consensus 80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~ 151 (644)
T 2z6h_A 80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 151 (644)
T ss_dssp HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence 999999888899999999999999999998754 899999999999998777777778889999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
+++.++..++.+|.+++.++++++..+.+.|+++.|+.++++. .+.+++.++.+|++++. ++..+..+++.|+++.|+
T Consensus 152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALG 230 (644)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHH
Confidence 9999999999999999987889999999999999999999875 46788999999999996 467789999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC--------Ccc
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV--------SVL 369 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------~~~ 369 (399)
.++.+++..++..++++|.|++...+.. ....++++.|++++.+++++++..|+++|.+|+...+. +.+
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v 307 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 9999999999999999999998654321 11237899999999999999999999999999986532 345
Q ss_pred hhHHHHHhh
Q 015851 370 PAILIFIII 378 (399)
Q Consensus 370 ~~~~~~~~~ 378 (399)
+.++..+..
T Consensus 308 ~~Lv~lL~~ 316 (644)
T 2z6h_A 308 EALVRTVLR 316 (644)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 665555543
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.1e-25 Score=222.04 Aligned_cols=296 Identities=21% Similarity=0.255 Sum_probs=247.3
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
.+.++.|.+.+.. ++++.++..|+.+|.+++.+++++..+.+.|+++.|+++|.+++. .++..|+++
T Consensus 55 ~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~v~~~A~~a 121 (644)
T 2z6h_A 55 PQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYAITT 121 (644)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH------------HHHHHHHHH
T ss_pred cChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH------------HHHHHHHHH
Confidence 4667777776642 246788999999999999998899999999999999999988655 899999999
Q ss_pred HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
|.+++ ..+..+..+.+.|+++.|+.+|.+.+. .++..++.+|.+++..++..+..+...|+++.|+.++.+
T Consensus 122 L~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~ 193 (644)
T 2z6h_A 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193 (644)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence 99999 557788888899999999999998754 788888899999998788888888999999999999988
Q ss_pred CC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh---------------------------------------
Q 015851 219 TD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML--------------------------------------- 258 (399)
Q Consensus 219 ~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll--------------------------------------- 258 (399)
.+ ..++..++.+|++|+. .+.++..+++.|+++.|+.++
T Consensus 194 ~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL 272 (644)
T 2z6h_A 194 YTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 272 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHH
Confidence 65 6788999999999997 678888888888777665544
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhccCh---hhHHHHHhcC
Q 015851 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDS---DCKVHIVQRG 333 (399)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~g 333 (399)
.+++++++..|+++|++|+..++..+..+.+.|+++.|+.+|.+. .+.++..|+++|+|++...+ ..+..+.+.|
T Consensus 273 ~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~ 352 (644)
T 2z6h_A 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc
Confidence 446677888888888888877677788899999999999999863 37999999999999986544 2455688899
Q ss_pred CHHHHHHhhCCCC-HHHHHHHHHHHHHhhccCCC-------CcchhHHHHHh
Q 015851 334 AVRPLIEMLQSPD-VQLREMSAFALGRLAQVITV-------SVLPAILIFII 377 (399)
Q Consensus 334 ~v~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~ 377 (399)
+++.|++++.+++ +.+++.|+++|+|++....+ +.+|.++..+.
T Consensus 353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred ChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 9999999998764 79999999999999986653 35566555553
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.95 E-value=1.5e-25 Score=191.31 Aligned_cols=201 Identities=23% Similarity=0.331 Sum_probs=186.3
Q ss_pred hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (399)
Q Consensus 155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (399)
..+..+.|..+|.+.+. +++..++++|.+++..++..+..+...|+++.|+.+|.++++.++..|+++|+++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35688999999987766 8999999999999988888888899999999999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHH
Q 015851 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (399)
+.++++.+..+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++++.++..|+++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98788999999999999999999999999999999999999998878888889999999999999999999999999999
Q ss_pred HHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 315 L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
|+|++..+++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.+
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 9999987788899999999999999999999999999999999999853
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.94 E-value=7.7e-25 Score=221.52 Aligned_cols=294 Identities=22% Similarity=0.288 Sum_probs=251.8
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+.++.|..++. ++++.+|..|+.+|.+++.+...+..+... |+++.|+++|.+... ++++..|++
T Consensus 149 ~g~ip~Lv~lL~--~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d-----------~~vr~~Aa~ 215 (780)
T 2z6g_A 149 TRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCTSG 215 (780)
T ss_dssp HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCC-----------HHHHHHHHH
T ss_pred hCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCC-----------HHHHHHHHH
Confidence 566777777774 567889999999999999987777777755 899999999986522 289999999
Q ss_pred HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
+|.+++..++++..+.+.|+++.|+.+|++.+. .++..++++|.+|+...+..+..+...|+++.|+.+|.+
T Consensus 216 aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~ 287 (780)
T 2z6g_A 216 TLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287 (780)
T ss_dssp HHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence 999999888889999999999999999998754 899999999999998877888878889999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
++..++..++.+|.+++..+++.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.. +..+..+++.|+++.|+
T Consensus 288 ~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll 366 (780)
T 2z6g_A 288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALG 366 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHH
Confidence 99999999999999999878899999999999999999998765 45677899999999964 66788899999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC--------CCcc
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT--------VSVL 369 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~~~ 369 (399)
.++.+.+..++..++++|.+++...... ....++++.|++++.++++.++..|+++|.+|+...+ .+.+
T Consensus 367 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i 443 (780)
T 2z6g_A 367 LHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443 (780)
T ss_dssp GGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHH
T ss_pred HHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 9999999999999999999999654321 1124679999999999999999999999999998754 2356
Q ss_pred hhHHHHHhh
Q 015851 370 PAILIFIII 378 (399)
Q Consensus 370 ~~~~~~~~~ 378 (399)
+.++..+..
T Consensus 444 ~~Lv~lL~~ 452 (780)
T 2z6g_A 444 EALVRTVLR 452 (780)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666544
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=7.2e-25 Score=187.02 Aligned_cols=200 Identities=28% Similarity=0.381 Sum_probs=184.5
Q ss_pred HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (399)
Q Consensus 101 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~ 179 (399)
...|..+.|..+|++++. +++..|+++|.+++ .+++.+..+.+.|+++.|+++|.+.+.
T Consensus 9 ~~~~~~~~l~~LL~s~~~------------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-------- 68 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQ------------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-------- 68 (210)
T ss_dssp ----CHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------
T ss_pred cccchhHHHHHHhcCCCH------------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--------
Confidence 456889999999998776 89999999999999 889999999999999999999998755
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
+++..++++|++++..++..+..+...|+++.|+.+|.++++.++..|+++|+|++.++++....+.+.|+++.|+.++.
T Consensus 69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 148 (210)
T 4db6_A 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc
Confidence 89999999999999888888888999999999999999999999999999999999878888888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
+++++++..|+++|+|++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus 149 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 149 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998878888899999999999999999999999999999999974
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=1.1e-24 Score=220.51 Aligned_cols=281 Identities=22% Similarity=0.244 Sum_probs=243.3
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
++.++.|...+.. +++..+|..|+++|.+++.+++++..+.+.|+++.|+.+|.+.+. .++..|+++
T Consensus 191 ~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A~~a 257 (780)
T 2z6g_A 191 PQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHAITT 257 (780)
T ss_dssp HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred cChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHHHH
Confidence 4667777777642 237889999999999999998888899999999999999988754 899999999
Q ss_pred HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
|.+++ ..+..+..+.+.|+++.|+.+|.+.+. .++..++.+|.+++..++..+..+...++++.|+.++++
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 99999 667888888899999999999997554 788999999999998788888888888999999999998
Q ss_pred CC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 219 TD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 219 ~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
.+ ...+..++.+|.+|+. .+.++..+++.|+++.|+.++.+.++.++..++++|.+++...... ....++++.|+
T Consensus 330 ~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv 405 (780)
T 2z6g_A 330 YTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLV 405 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHH
Confidence 76 4567788999999997 6788899999999999999999999999999999999999654321 11235789999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC-C-CHHHHHHHHHHHHHhhccCC
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~-~-~~~v~~~a~~~L~~l~~~~~ 365 (399)
.+|.+.++.++..|+++|++++..+++.+..+.+.|+++.|++++.+ + ...++..|+++|++|+...+
T Consensus 406 ~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 406 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999998777888999999999999999975 3 34899999999999987543
No 33
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=5.9e-24 Score=189.03 Aligned_cols=191 Identities=23% Similarity=0.259 Sum_probs=174.0
Q ss_pred hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHh-cccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~ 151 (399)
+.+.+.+..|+..|.+++.+.++...+.+.|++++|+. +|.+++. ++|..|+|+|++++ .++..++
T Consensus 51 ~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~------------~vr~~Aa~~Lg~ia~~n~~~~~ 118 (296)
T 1xqr_A 51 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA------------GLRWRAAQLIGTCSQNVAAIQE 118 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 45567899999999999999888889999999999999 9987665 89999999999999 7889999
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (399)
.+++.|+++.|+.+|++..+. .+++.++|+|+|++.+++.....+...|+++.|+.+|.++++.++..|+++|
T Consensus 119 ~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aL 191 (296)
T 1xqr_A 119 QVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL 191 (296)
T ss_dssp HHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999864332 8999999999999988887777788899999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (399)
.+|+.++++.+..+++.|+++.|+.+|.++++.++..|+++|++|+...+..
T Consensus 192 s~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999988889999999999999999999999999999999999999764443
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.92 E-value=2.1e-23 Score=185.41 Aligned_cols=224 Identities=17% Similarity=0.154 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH-HHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~-~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
+-+..|+..|.+++.+.++...+...|+++.|+. +|.+.+. +++..++|+|++++.+++..+..+...|++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 5788899999999998899999999999999999 9987655 899999999999999899999999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 210 PPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 210 ~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
+.|+.+|++ +++.++..|+++|+||+.+++.....+.+.|+++.|+.+|.+++..++..|+|+|++++.++++.+..++
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999996 4789999999999999988888888899999999999999999999999999999999988888899999
Q ss_pred HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhc--CCHHHH---HHhhCCC--CHHHHHHHHHHHHHhh
Q 015851 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR--GAVRPL---IEMLQSP--DVQLREMSAFALGRLA 361 (399)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--g~v~~L---~~ll~~~--~~~v~~~a~~~L~~l~ 361 (399)
+.|+++.|+.+|.++++.+++.|+.+|+|++...+......... .+...| ++-++.. ..++.+.+..++.++-
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999997644443333221 122222 2233322 4577777777777766
Q ss_pred c
Q 015851 362 Q 362 (399)
Q Consensus 362 ~ 362 (399)
.
T Consensus 287 ~ 287 (296)
T 1xqr_A 287 S 287 (296)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=7.4e-23 Score=174.24 Aligned_cols=198 Identities=25% Similarity=0.343 Sum_probs=173.1
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (399)
.++.++++|.+.+.+. +++..++++|.+++..++..+..+...|+||.|+.+|+++++++++.|+++|.||+.+
T Consensus 9 ~i~~lV~lL~s~~~~~------~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 9 TLERAVSMLEADHMLP------SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CHHHHHHTCCSSCCCH------HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhCCCCchH------HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5899999998876532 6778899999999988888888899999999999999999999999999999999987
Q ss_pred ChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc---------------
Q 015851 238 NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--------------- 301 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--------------- 301 (399)
+++++..+.+.|++|.|+++|. +++.++++.|+.+|+||+.. +..+..+.+ ++++.|+.++.
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCccccccccc
Confidence 8999999999999999999998 57899999999999999864 666777776 46899988763
Q ss_pred -CCChHHHHHHHHHHHHhhccChhhHHHHHhc-CCHHHHHHhhCC------CCHHHHHHHHHHHHHhhcc
Q 015851 302 -SCCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS------PDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 302 -~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 363 (399)
..++.++.+|+++|.|++..+++.|+.+.+. |+++.|+.+++. .+...+++|+.+|+||+..
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1256899999999999998778999999874 778999999963 3668999999999999865
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.4e-23 Score=198.47 Aligned_cols=288 Identities=17% Similarity=0.173 Sum_probs=229.1
Q ss_pred HhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hh--------------------------------------
Q 015851 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EE-------------------------------------- 95 (399)
Q Consensus 55 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~-------------------------------------- 95 (399)
.......+++.|..++.. .++..+...++.+|.|++.+ +.
T Consensus 370 ~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 445566777777777743 23456788999999999873 20
Q ss_pred HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccc
Q 015851 96 VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCS 175 (399)
Q Consensus 96 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~ 175 (399)
++..+.+.|+++.|+.++.+.++ .+|..++++|.+++.++++|..+++.|+++.|+.++.+......
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~------------~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~- 515 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSP------------NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE- 515 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCH------------HHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CC-
T ss_pred HHHHHHHCcCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcch-
Confidence 45567789999999999988765 78999999999999999999999999999999999988764311
Q ss_pred cccHHHHHHHHHHHHHHhhcCchhHHHHHh---cCChHHHHHhhcC-CC-H------------HHHHHHHHHHHHhhcCC
Q 015851 176 RAVNSVIRRAADAITNLAHENSSIKTRVRM---EGGIPPLVELLEF-TD-T------------KVQRAAAGALRTLAFKN 238 (399)
Q Consensus 176 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~-~------------~v~~~a~~~L~~L~~~~ 238 (399)
..+..|+.+|.+++...... ..+.. .++++.|+.+|.. +. . --+..|+.+|.||+..+
T Consensus 516 ----~~k~~AA~ALArLlis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~ 590 (778)
T 3opb_A 516 ----PIRILGCRALTRMLIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE 590 (778)
T ss_dssp ----HHHHHHHHHHHHHHHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHHhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC
Confidence 48899999999999543321 11211 3889999999983 11 1 12779999999999954
Q ss_pred ----hhhHHHHHhc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH-HHHHHCC------CcHHHHHhhcCCChH
Q 015851 239 ----DENKNQIVEC-NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAG------ALQPVIGLLSSCCSE 306 (399)
Q Consensus 239 ----~~~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~------~l~~L~~lL~~~~~~ 306 (399)
++.+..++.. |+++.|..+|.+++..++..|+++++||+.+ +..+ +.+...+ .++.|+.+++..+.+
T Consensus 591 ~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~ 669 (778)
T 3opb_A 591 TSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVE 669 (778)
T ss_dssp SHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHH
T ss_pred cccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHH
Confidence 2446777885 9999999999999999999999999999964 4442 2333222 377899999999999
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhc-CCHHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 015851 307 SQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS--PDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 307 v~~~a~~~L~~l~~~~~~~~~~l~~~-g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 362 (399)
++.+|+|+|+|++..++...+.+.+. ++++.++.++++ +++++++.++.++.|++.
T Consensus 670 ~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 670 SQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987677777778775 899999999987 899999999999999997
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=171.51 Aligned_cols=196 Identities=21% Similarity=0.271 Sum_probs=171.1
Q ss_pred ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (399)
Q Consensus 105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~ 183 (399)
.++.++++|.+++. +++++..|+++|.+++ .+++++..+.+.|++|.|+++|.+.+. ++++
T Consensus 9 ~i~~lV~lL~s~~~----------~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--------~vq~ 70 (233)
T 3tt9_A 9 TLERAVSMLEADHM----------LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--------DVQR 70 (233)
T ss_dssp CHHHHHHTCCSSCC----------CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--------HHHH
T ss_pred cHHHHHHHhCCCCc----------hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58899999998765 2267889999999999 789999999999999999999998665 9999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc---
Q 015851 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--- 259 (399)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~--- 259 (399)
.++|+|.||+..++..+..+.+.|+||.|+.+|. +++.++++.|+.+|+||+. .+.++..+.+. ++|.|+.++.
T Consensus 71 ~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~ 148 (233)
T 3tt9_A 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPF 148 (233)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccc
Confidence 9999999999878888999999999999999998 5789999999999999998 68888888875 6899988653
Q ss_pred -------------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHC-CCcHHHHHhhcC------CChHHHHHHHHHHHHhh
Q 015851 260 -------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA 319 (399)
Q Consensus 260 -------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~ 319 (399)
..+++++.+|.++|.|++..+++.++.+.+. |+++.|+.+++. .+...+++|+.+|.||+
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 1367999999999999998777888999886 567999999974 25588999999999997
Q ss_pred c
Q 015851 320 A 320 (399)
Q Consensus 320 ~ 320 (399)
.
T Consensus 229 ~ 229 (233)
T 3tt9_A 229 Y 229 (233)
T ss_dssp C
T ss_pred h
Confidence 4
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-21 Score=190.66 Aligned_cols=281 Identities=16% Similarity=0.172 Sum_probs=221.5
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccC-CCCcccccCCCcchHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQA-PPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~-~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
..+.+.+.+++... +...+..|++.|..++.+++.+..+++. |++..|++++++ .+. .+...++
T Consensus 333 ~~La~~~~~~L~~~--~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~------------s~~Ygal 398 (778)
T 3opb_A 333 KQLSEIFINAISRR--IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMT------------HCLYGLL 398 (778)
T ss_dssp HHHHHHHHHHTTTC--CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCT------------THHHHHH
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCc------------hHHHHHH
Confidence 34566666666432 2233899999999999999999988866 669999999986 333 5778899
Q ss_pred HHHHHhcC-Chh--------------------------------------hHHHHHhcCcHHHHHHHHhccccCcccccc
Q 015851 138 FALGLLAV-KPE--------------------------------------HQQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (399)
Q Consensus 138 ~~L~~l~~-~~~--------------------------------------~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~ 178 (399)
.+|.|++. .+. ++..+.+.|+++.|+.++.+.+.
T Consensus 399 ~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~------- 471 (778)
T 3opb_A 399 VIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP------- 471 (778)
T ss_dssp HHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCH-------
T ss_pred HHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCH-------
Confidence 99999983 220 35667889999999999988766
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH---HHHHHHHHHHHhhcCChhhHHHHHh---cCCHH
Q 015851 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK---VQRAAAGALRTLAFKNDENKNQIVE---CNALP 252 (399)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~L~~L~~~~~~~~~~~~~---~~~~~ 252 (399)
.+++.++++|.||+ .++..+..+.+.|+++.|+.++.+.+.. .+..|+.+|.+|+.. .+....+-. .|+++
T Consensus 472 -~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis-~np~~~f~~~~~~~aI~ 548 (778)
T 3opb_A 472 -NCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF-TNPGLIFKKYSALNAIP 548 (778)
T ss_dssp -HHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT-SCHHHHSSSSCSTTHHH
T ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc-CCHHHHcCCCccccchH
Confidence 89999999999999 5688899999999999999999987654 899999999999963 222222211 38899
Q ss_pred HHHHhhcC-CCH-------------HHHHHHHHHHHHhhcCC----hhHHHHHHHC-CCcHHHHHhhcCCChHHHHHHHH
Q 015851 253 TLILMLRS-EDS-------------AIHYEAVGVIGNLVHSS----PNIKKEVLAA-GALQPVIGLLSSCCSESQREAAL 313 (399)
Q Consensus 253 ~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~----~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~ 313 (399)
.|+.+|.. +.. --+..|+.+|.||+..+ ++.+..++.+ |+++.|..+|.+.+..++.+|++
T Consensus 549 pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~e 628 (778)
T 3opb_A 549 FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE 628 (778)
T ss_dssp HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999983 211 12779999999999765 2446778886 99999999999999999999999
Q ss_pred HHHHhhccChhhH-HHHHhcC------CHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 314 LLGQFAATDSDCK-VHIVQRG------AVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 314 ~L~~l~~~~~~~~-~~l~~~g------~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+++|++. +++.+ ..+.+.+ .++.|+.++.+++.++|++|+++|.|++...+
T Consensus 629 lI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 629 LISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 9999996 46654 3443322 37899999999999999999999999975444
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=1.1e-15 Score=145.24 Aligned_cols=288 Identities=16% Similarity=0.124 Sum_probs=228.2
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-Chh-----------------HHHHH-HhCCChHHHHhcccCCCC
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEE-----------------VVNWI-VEGGAVPALVKHLQAPPT 118 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~-----------------~~~~~-~~~g~l~~L~~lL~~~~~ 118 (399)
.+...++.|...+....+|.++...++++|.++.. +++ +.+.+ .+.+.++.|+.+|+..+.
T Consensus 57 Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df 136 (651)
T 3grl_A 57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF 136 (651)
T ss_dssp HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH
T ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH
Confidence 34455666666666566788888899999988766 321 22333 356899999999987766
Q ss_pred cccccCCCcchHHHHHHHHHHHHHhc-CChh-hHHHHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc
Q 015851 119 SEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (399)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~-~~~~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 195 (399)
.+|.+++.+|..++ ..++ .++.+.. .++++.|+.+|++..+ .++-.++..|.+|+.+
T Consensus 137 ------------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--------~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 137 ------------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--------VIRNDGVLLLQALTRS 196 (651)
T ss_dssp ------------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--------HHHHHHHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--------HHHHHHHHHHHHHhcC
Confidence 78999999999999 6665 8888885 5999999999998776 7888899999999999
Q ss_pred CchhHHHHHhcCChHHHHHhhcCCCH----HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH------HH
Q 015851 196 NSSIKTRVRMEGGIPPLVELLEFTDT----KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS------AI 265 (399)
Q Consensus 196 ~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~------~v 265 (399)
++.++..+.-.|+++.|+.++..+.. .+...++.+|.||..+++.++..+.+.|+++.|..++..+++ ..
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk 276 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQK 276 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHH
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHH
Confidence 99999988888999999999987553 789999999999999999999999999999999999975432 12
Q ss_pred HHH---HHHHHHHhhcC------ChhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhccChhhHHHHHhcC-
Q 015851 266 HYE---AVGVIGNLVHS------SPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRG- 333 (399)
Q Consensus 266 ~~~---a~~~L~~l~~~------~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g- 333 (399)
..+ ++.++.-++.. ...+...+.+.|+++.+++++... +..++.+|+.+++.+..+++.++..+....
T Consensus 277 ~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v 356 (651)
T 3grl_A 277 VTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356 (651)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC
Confidence 333 55566666543 234567888999999999998754 568999999999999999998888887643
Q ss_pred --------CHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCC
Q 015851 334 --------AVRPLIEMLQS-PDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 334 --------~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 365 (399)
++..|+.++.+ ....+|.+|+.++..+..+.+
T Consensus 357 p~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp SSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 33344444554 568899999999999886654
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.67 E-value=1.6e-14 Score=137.34 Aligned_cols=269 Identities=15% Similarity=0.164 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChh-------
Q 015851 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE------- 148 (399)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~------- 148 (399)
.+-|..|+..|..++++ ++. .+..++++.|+..|+.+.. +.++...++.+|.++. .+++
T Consensus 36 ~eDRR~Av~~Lk~~sk~--y~~-~Vg~~~l~~li~~L~~d~~----------D~e~v~~~LetL~~l~~~~~~~~~~~~~ 102 (651)
T 3grl_A 36 LDDRRNAVRALKSLSKK--YRL-EVGIQAMEHLIHVLQTDRS----------DSEIIGYALDTLYNIISNDEEEEVEENS 102 (651)
T ss_dssp HHHHHHHHHHHHHTTTT--TTT-HHHHHTHHHHHHHHHSCTT----------CHHHHHHHHHHHHHHHCCC---------
T ss_pred hhHHHHHHHHHHHHHHH--hHH-HhhhhhHHHHHHHHhcccc----------cHHHHHHHHHHHHHHhCCCCcccccccc
Confidence 45677999999999875 222 2457789999999988654 3378888999998866 3221
Q ss_pred ----------hHHHH-HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-hHHHHHh-cCChHHHHHh
Q 015851 149 ----------HQQLI-VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRM-EGGIPPLVEL 215 (399)
Q Consensus 149 ----------~~~~i-~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~L~~l 215 (399)
+.+.+ .+.+.++.|+.+|+..+. .++..++..|..|+...+. .++.+.. .++++.|+.+
T Consensus 103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -----CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 22233 356789999999987655 8999999999999987776 7777774 4999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 291 (399)
|++..+.+|..++..|.+|+.++++.++.+.-.|+++.|+.++..+. ..+...++.+|.||...++.+...+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 99999999999999999999988888888888999999999998643 37889999999999999888889999999
Q ss_pred CcHHHHHhhcCCCh------HHHHH---HHHHHHHhhccC------hhhHHHHHhcCCHHHHHHhhCCC--CHHHHHHHH
Q 015851 292 ALQPVIGLLSSCCS------ESQRE---AALLLGQFAATD------SDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSA 354 (399)
Q Consensus 292 ~l~~L~~lL~~~~~------~v~~~---a~~~L~~l~~~~------~~~~~~l~~~g~v~~L~~ll~~~--~~~v~~~a~ 354 (399)
+++.|..+|..+.. ....+ +..++.-++..+ +.++..+.+.|+++.|++++.+. ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999974322 12233 455666666542 25678899999999999999754 678999999
Q ss_pred HHHHHhhccCCC
Q 015851 355 FALGRLAQVITV 366 (399)
Q Consensus 355 ~~L~~l~~~~~~ 366 (399)
.+++.+.+..+.
T Consensus 335 ~tla~~irgN~~ 346 (651)
T 3grl_A 335 NTVSEVIRGCQV 346 (651)
T ss_dssp HHHHHHHTTCHH
T ss_pred HHHHHHHhCCHH
Confidence 999998876653
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.62 E-value=1.5e-13 Score=122.09 Aligned_cols=238 Identities=16% Similarity=0.119 Sum_probs=178.3
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (399)
Q Consensus 62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 141 (399)
.++.|...+ .++++.+|..|++.|.++.. + +.++.|+.++.+++. .+|..|+++|+
T Consensus 24 ~i~~L~~~L--~~~~~~vr~~A~~~L~~~~~-~---------~~~~~L~~~l~d~~~------------~vR~~A~~aL~ 79 (280)
T 1oyz_A 24 NDDELFRLL--DDHNSLKRISSARVLQLRGG-Q---------DAVRLAIEFCSDKNY------------IRRDIGAFILG 79 (280)
T ss_dssp CHHHHHHHT--TCSSHHHHHHHHHHHHHHCC-H---------HHHHHHHHHHTCSSH------------HHHHHHHHHHH
T ss_pred hHHHHHHHH--HcCCHHHHHHHHHHHHccCC-c---------hHHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence 455666666 35678899999999999862 2 347888899987765 79999999999
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHH-HhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851 142 LLAVKPEHQQLIVDNGALSHLVNL-LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (399)
Q Consensus 142 ~l~~~~~~~~~i~~~~~i~~L~~~-L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (399)
.+...+..... .++.|... +.+.+. .++..++++|+++...++... ...++.|+.++.+++
T Consensus 80 ~l~~~~~~~~~-----l~~~L~~~~~~d~~~--------~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~ 141 (280)
T 1oyz_A 80 QIKICKKCEDN-----VFNILNNMALNDKSA--------CVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKS 141 (280)
T ss_dssp HSCCCTTTHHH-----HHHHHHHHHHHCSCH--------HHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSC
T ss_pred HhccccccchH-----HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCC
Confidence 99844322111 22333322 333333 899999999999985443222 245788999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 300 (399)
+.++..++.+|+++.. .+.++.|+.++.++++.++..|+++|+.+....+ .+++.|+.++
T Consensus 142 ~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l 201 (280)
T 1oyz_A 142 TNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEML 201 (280)
T ss_dssp HHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHh
Confidence 9999999999998764 2479999999999999999999999999853322 2467889999
Q ss_pred cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHh
Q 015851 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII 377 (399)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 377 (399)
.++++.++..|+++|+++. ....++.|+.++.+++ ++..|..+|+.+.. ...+|.+...+.
T Consensus 202 ~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~~~~~~L~~~l~ 262 (280)
T 1oyz_A 202 QDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---KTLLPVLDTMLY 262 (280)
T ss_dssp TCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---GGGHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---hhhhHHHHHHHh
Confidence 9999999999999999985 2346888899997654 89999999999865 345776655553
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.54 E-value=4.1e-14 Score=145.29 Aligned_cols=279 Identities=14% Similarity=0.129 Sum_probs=191.7
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
...+++.+...+ .+.+..+|..|+++|.++... +..... .-.++++.+..++.+++. ++|..++
T Consensus 172 ~~~il~~l~~~l--~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~------------~vr~~a~ 236 (852)
T 4fdd_A 172 LNIMIPKFLQFF--KHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEP------------EVRKNVC 236 (852)
T ss_dssp HHHHHHHHTTTT--TCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCH------------HHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCH------------HHHHHHH
Confidence 344566666655 456778999999999988764 221100 012467788887776554 8999999
Q ss_pred HHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH--hcCChHHHHH
Q 015851 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVE 214 (399)
Q Consensus 138 ~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ 214 (399)
++|..++ ..++.-..... +.++.++..+.+.++ +++..++.++..++... ..+..+. ....+|.++.
T Consensus 237 ~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~--------~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~ 306 (852)
T 4fdd_A 237 RALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDE--------NVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVN 306 (852)
T ss_dssp HHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSH--------HHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcH--------HHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHH
Confidence 9999999 55543222111 366777777776543 89999999999998532 2222111 1134566666
Q ss_pred hh-----------cC-----------CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 015851 215 LL-----------EF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV 272 (399)
Q Consensus 215 ll-----------~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 272 (399)
.+ .+ .+..++..+..+|..++...++ .+.. .+++.+...+.+++..+|..|+++
T Consensus 307 ~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~a 382 (852)
T 4fdd_A 307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILV 382 (852)
T ss_dssp HTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 66 22 2235788999999999863222 1222 367788888888999999999999
Q ss_pred HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHH
Q 015851 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 352 (399)
Q Consensus 273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~ 352 (399)
+++++.+...... ..-.++++.++..+.++++.++..|+++|++++...+.......-.++++.|++.+.++++.++..
T Consensus 383 lg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 383 LGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999976543222 122457889999999999999999999999998532211111112356788999998889999999
Q ss_pred HHHHHHHhhccCCCC
Q 015851 353 SAFALGRLAQVITVS 367 (399)
Q Consensus 353 a~~~L~~l~~~~~~~ 367 (399)
|+++|.+++...+..
T Consensus 462 a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 462 ACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhHh
Confidence 999999999876654
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.54 E-value=2.3e-13 Score=139.76 Aligned_cols=277 Identities=14% Similarity=0.150 Sum_probs=191.8
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHH----hCCChHHHHhcccCCCCcccccCCCcchHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIV----EGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~----~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~ 132 (399)
.++.+++.|...+. +.+...+..|+.+|..++.+ +.....-. -.++++.+++++.+++. ++
T Consensus 125 ~wp~ll~~L~~~l~--~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~------------~v 190 (852)
T 4fdd_A 125 NWPDLLPKLCSLLD--SEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP------------KI 190 (852)
T ss_dssp TCTTHHHHHHHHHS--CSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH------------HH
T ss_pred ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH------------HH
Confidence 46678888887774 44667899999999999875 33211100 12357778888876544 89
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (399)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (399)
|..|+++|.++.........-.-.+.++.++..+.+.+. +++..++++|..++...+..-... -.++++.+
T Consensus 191 R~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~--------~vr~~a~~~L~~l~~~~~~~~~~~-l~~l~~~l 261 (852)
T 4fdd_A 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP--------EVRKNVCRALVMLLEVRMDRLLPH-MHNIVEYM 261 (852)
T ss_dssp HHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCH--------HHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHH
Confidence 999999999888332211100011366777777765544 899999999999997655422111 12467888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh---cCCHHHHHHhh-----------cC-----------CCHHHHH
Q 015851 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE---CNALPTLILML-----------RS-----------EDSAIHY 267 (399)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~~~~L~~ll-----------~~-----------~~~~v~~ 267 (399)
+..+.+.++.++..|+.++..++.. ...+. ... ...+|.++..+ .+ .+..++.
T Consensus 262 ~~~~~~~~~~vr~~a~e~l~~l~~~-~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~ 339 (852)
T 4fdd_A 262 LQRTQDQDENVALEACEFWLTLAEQ-PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK 339 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTS-TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcc-hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence 8888999999999999999999863 32222 222 23466676666 22 1224788
Q ss_pred HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (399)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 347 (399)
.|..+|..++...+.. +. ..+++.+...+.++++.+|..|+++|++++.+..+.... .-.++++.++.++.++++
T Consensus 340 ~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 340 CSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp HHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCH
Confidence 9999999998543221 11 135777778888889999999999999999765432222 224578999999999999
Q ss_pred HHHHHHHHHHHHhhccC
Q 015851 348 QLREMSAFALGRLAQVI 364 (399)
Q Consensus 348 ~v~~~a~~~L~~l~~~~ 364 (399)
.||..|++++++++...
T Consensus 415 ~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999853
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.52 E-value=3.2e-12 Score=113.47 Aligned_cols=215 Identities=13% Similarity=0.016 Sum_probs=165.5
Q ss_pred HHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (399)
Q Consensus 100 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~ 179 (399)
....+.++.|+..|.+++. .+|..|+++|+++.. .+.++.|+.++.+.+.
T Consensus 19 ~~~~~~i~~L~~~L~~~~~------------~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~-------- 68 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNS------------LKRISSARVLQLRGG----------QDAVRLAIEFCSDKNY-------- 68 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSH------------HHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSH--------
T ss_pred HHHHhhHHHHHHHHHcCCH------------HHHHHHHHHHHccCC----------chHHHHHHHHHcCCCH--------
Confidence 3456789999999987665 889999999999872 2367889999987655
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll 258 (399)
.++..++++|..+........ ..++.+. .++.++++.++..++++|+++....+... ...++.|+.++
T Consensus 69 ~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l 137 (280)
T 1oyz_A 69 IRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA 137 (280)
T ss_dssp HHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh
Confidence 899999999999874322211 1234444 34677889999999999999985333222 23578899999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 015851 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (399)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L 338 (399)
.++++.++..|+++|+++.. .+.++.|+.++.++++.++..|+++|+.+...++ .+++.|
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L 197 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCF 197 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHH
T ss_pred hCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHH
Confidence 99999999999999998852 2478999999999999999999999999853222 346889
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhh
Q 015851 339 IEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIII 378 (399)
Q Consensus 339 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 378 (399)
..++.++++.+|..|+++|+++. +...++.+...+..
T Consensus 198 ~~~l~d~~~~vR~~A~~aL~~~~---~~~~~~~L~~~l~d 234 (280)
T 1oyz_A 198 VEMLQDKNEEVRIEAIIGLSYRK---DKRVLSVLCDELKK 234 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTT---CGGGHHHHHHHHTS
T ss_pred HHHhcCCCHHHHHHHHHHHHHhC---CHhhHHHHHHHhcC
Confidence 99999999999999999999997 33456766665543
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=5.6e-13 Score=113.14 Aligned_cols=190 Identities=25% Similarity=0.274 Sum_probs=154.5
Q ss_pred CCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (399)
Q Consensus 103 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~ 182 (399)
.+.++.|+.+|.+++. .+|..|+++|+.+.. .+.++.|+.++.+.+. .++
T Consensus 18 ~~~~~~L~~~L~~~~~------------~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~--------~vr 67 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSY------------YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA--------WVR 67 (211)
T ss_dssp GGGHHHHHHHTTCSSH------------HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCH--------HHH
T ss_pred HhHHHHHHHHHcCCCH------------HHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCH--------HHH
Confidence 3568889999987665 899999999998864 2478999999987654 899
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (399)
..++++|..+.. .+.++.|+.+|.++++.++..++.+|+.+.. + +.++.|+.++.+++
T Consensus 68 ~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~ 125 (211)
T 3ltm_A 68 RAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDED 125 (211)
T ss_dssp HHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSS
T ss_pred HHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCC
Confidence 999999988762 3467889999999999999999999998864 2 46899999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (399)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll 342 (399)
+.++..|+++|+++. .+ ..++.|..++.++++.++..|+.+|..+. . ..+++.|..++
T Consensus 126 ~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l 183 (211)
T 3ltm_A 126 WFVRIAAAFALGEIG--DE---------RAVEPLIKALKDEDGWVRQSAADALGEIG--G---------ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--S---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------hhHHHHHHHHH
Confidence 999999999999994 22 35788999999999999999999999984 2 23467888889
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCC
Q 015851 343 QSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++++.||..|..+|.++....++
T Consensus 184 ~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 184 ETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHCCHHHHHHHHHHHHC-------
T ss_pred hCCCHHHHHHHHHHHHhcCCCCCC
Confidence 889999999999999999877654
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.48 E-value=1.7e-12 Score=127.40 Aligned_cols=298 Identities=14% Similarity=0.123 Sum_probs=209.5
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
+.+++.+..++ .++++.+|..|+++|..++.. ++.+.......++|.+..++.+++. .+|..++
T Consensus 280 ~~l~~~l~~~l--~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~------------~vR~~a~ 345 (588)
T 1b3u_A 280 TDLVPAFQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ------------HVKSALA 345 (588)
T ss_dssp HTHHHHHHHHH--TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCH------------HHHHHHH
T ss_pred hHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCH------------HHHHHHH
Confidence 34566666665 456778899999999888764 3322222334567888888877655 7899999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
++|+.++..-... ......++.+..++++.+. +++..++.++..+....... ......+|.+..++.
T Consensus 346 ~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~--------~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~ 412 (588)
T 1b3u_A 346 SVIMGLSPILGKD--NTIEHLLPLFLAQLKDECP--------EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAE 412 (588)
T ss_dssp TTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCH--------HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhc
Confidence 9999998221111 1123367888888876554 89999999998888543221 122456788889999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
+.++.++..++.++..++..... .+....++|.+...+.+++..+|..|+.+++.++..... ......+++.+.
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~ 486 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVL 486 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHH
Confidence 99999999999999998852111 111223678899999999999999999999999853221 122345788888
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-----cchhH
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-----VLPAI 372 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~ 372 (399)
.++.+++..+|..++++++.++..- . .......++|.|.+++.++++.||..++++|..++...+.. +.|.+
T Consensus 487 ~~~~~~~~~~R~~a~~~l~~l~~~~--~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l 563 (588)
T 1b3u_A 487 AMSGDPNYLHRMTTLFCINVLSEVC--G-QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563 (588)
T ss_dssp HTTTCSCHHHHHHHHHHHHHHHHHH--H-HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 8888889999999999999997531 1 12234567899999999999999999999999999765443 23333
Q ss_pred HHHHhhccccHHHHHHHHhhhHh
Q 015851 373 LIFIIINECQLEVLAFVLSEMVL 395 (399)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~~~~ 395 (399)
.. +..+...++...+...+..
T Consensus 564 ~~--l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 564 EK--LTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HH--HTTCSSHHHHHHHHHHHHH
T ss_pred HH--HcCCCchhHHHHHHHHHHH
Confidence 22 3455566777766665544
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.47 E-value=1.2e-12 Score=110.10 Aligned_cols=184 Identities=26% Similarity=0.297 Sum_probs=153.7
Q ss_pred CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (399)
Q Consensus 104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~ 183 (399)
+..+.++++|.+++. .+|..|+++|+.+.. .+.++.|+..+.+.+. .++.
T Consensus 14 ~~~~~~i~~L~~~~~------------~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~--------~vr~ 63 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSY------------YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA--------WVRR 63 (201)
T ss_dssp HHHHHHHHHTTCSCH------------HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH--------HHHH
T ss_pred cchHHHHHHhcCCCH------------HHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCH--------HHHH
Confidence 457788899988776 889999999998874 2478999999976654 8899
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH
Q 015851 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (399)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (399)
.++++|..+.. ...++.|+.+|.++++.++..|+++|+.+.. + ..++.|+.++.++++
T Consensus 64 ~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~ 121 (201)
T 3ltj_A 64 AAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDW 121 (201)
T ss_dssp HHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSH
T ss_pred HHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCH
Confidence 99999988752 2467889999999999999999999998864 2 368889999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~ 343 (399)
.++..|+++|+.+.. .+.++.|..++.++++.++..|+.+|+.+. ++. .++.|..++.
T Consensus 122 ~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~ 179 (201)
T 3ltj_A 122 FVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GER---------VRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--chh---------HHHHHHHHHh
Confidence 999999999999842 236788999999999999999999999983 222 4778888888
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 015851 344 SPDVQLREMSAFALGRLA 361 (399)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~ 361 (399)
++++.++..|..+|..+.
T Consensus 180 d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 180 TGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HCCHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 899999999999998875
No 48
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.45 E-value=6.2e-12 Score=123.46 Aligned_cols=296 Identities=16% Similarity=0.155 Sum_probs=205.1
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
...+++.|...+ .+++..+|..|..+|.+++.. +.. .....+++.+..+..+++. ..|..++
T Consensus 85 ~~~ll~~L~~l~--~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~------------~~R~~a~ 147 (588)
T 1b3u_A 85 VHCLLPPLESLA--TVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWF------------TSRTSAC 147 (588)
T ss_dssp GGGGHHHHHHHT--TSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSH------------HHHHHHG
T ss_pred HHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCc------------HHHHHHH
Confidence 344555555544 356778999999999999885 321 1222346666666655433 7888999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
.+++.++..-... .....++.+..++.+.+. .++..++.+|..++...... ......+|.+..++.
T Consensus 148 ~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~--------~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~ 213 (588)
T 1b3u_A 148 GLFSVCYPRVSSA---VKAELRQYFRNLCSDDTP--------MVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLAS 213 (588)
T ss_dssp GGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHT
T ss_pred HHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhc
Confidence 9999988322111 122356777777765544 89999999999999654321 223567899999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (399)
++++.+|..|+.+|..++...+. ......++|.+..++.+++..+|..++.+|+.++...+. ......+++.++
T Consensus 214 d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~ 287 (588)
T 1b3u_A 214 DEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQ 287 (588)
T ss_dssp CSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHH
Confidence 99999999999999999864322 122334788899999999999999999999999853211 122345789999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC-----Ccchh
Q 015851 298 GLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV-----SVLPA 371 (399)
Q Consensus 298 ~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~ 371 (399)
.+++++++.++..|+.+|..++.... +.+.......++|.+..++.++++.+|..++++|..++...+. .++|.
T Consensus 288 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~ 367 (588)
T 1b3u_A 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 99999999999999999999986432 2222233455788888999999999999999999998864432 23344
Q ss_pred HHHHHhhccccHHHHHHHHhhh
Q 015851 372 ILIFIIINECQLEVLAFVLSEM 393 (399)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~~ 393 (399)
+...+ .+...++...++..+
T Consensus 368 l~~~l--~d~~~~Vr~~a~~~l 387 (588)
T 1b3u_A 368 FLAQL--KDECPEVRLNIISNL 387 (588)
T ss_dssp HHHHH--TCSCHHHHHHHHTTC
T ss_pred HHHHh--CCCchHHHHHHHHHH
Confidence 43333 344445555544433
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=6.5e-12 Score=106.50 Aligned_cols=188 Identities=23% Similarity=0.240 Sum_probs=152.5
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.+..++.|...+ .+.++.+|..|++.|..+.. .+.++.|+.+|.+++. .+|..+++
T Consensus 17 ~~~~~~~L~~~L--~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~------------~vr~~a~~ 72 (211)
T 3ltm_A 17 DPEKVEMYIKNL--QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA------------WVRRAAAD 72 (211)
T ss_dssp CGGGHHHHHHHT--TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCH------------HHHHHHHH
T ss_pred CHhHHHHHHHHH--cCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCH------------HHHHHHHH
Confidence 355567777776 45678899999999998754 3568889999987655 89999999
Q ss_pred HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (399)
Q Consensus 139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (399)
+|+.+.. .+.++.|+..|.+.+. .++..++++|..+.. ...++.|+.++.+
T Consensus 73 aL~~~~~----------~~~~~~L~~~l~~~~~--------~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d 123 (211)
T 3ltm_A 73 ALGQIGD----------ERAVEPLIKALKDEDG--------WVRQSAAVALGQIGD-----------ERAVEPLIKALKD 123 (211)
T ss_dssp HHHHHCC----------GGGHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC
T ss_pred HHHhhCC----------HHHHHHHHHHHcCCCH--------HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC
Confidence 9999873 3478889999987655 899999999998862 2467889999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (399)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (399)
+++.++..++.+|+.+.. + ..++.|..++.++++.++..|+.+|+.+. .+. .++.|..
T Consensus 124 ~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~---------~~~~L~~ 181 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD--E---------RAVEPLIKALKDEDGWVRQSAADALGEIG--GER---------VRAAMEK 181 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SHH---------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--chh---------HHHHHHH
Confidence 999999999999999863 2 36889999999999999999999999994 222 4677888
Q ss_pred hhcCCChHHHHHHHHHHHHhhcc
Q 015851 299 LLSSCCSESQREAALLLGQFAAT 321 (399)
Q Consensus 299 lL~~~~~~v~~~a~~~L~~l~~~ 321 (399)
++.++++.++..|..+|.++...
T Consensus 182 ~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 182 LAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHCCHHHHHHHHHHHHC----
T ss_pred HHhCCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999998753
No 50
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.41 E-value=3.6e-12 Score=121.31 Aligned_cols=282 Identities=11% Similarity=0.062 Sum_probs=187.8
Q ss_pred hhhhHHHHhhhhhcchhh--hHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEA--DRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~--~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~ 133 (399)
.++.+++.|...+. +. ++..|..|+.+|..++.+ ++...... ..+++.+..++.++.. ++.+|
T Consensus 125 ~w~~ll~~L~~~l~--~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~----------~~~vr 191 (462)
T 1ibr_B 125 QWPELIPQLVANVT--NPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP----------SNNVK 191 (462)
T ss_dssp CCTTHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC----------CHHHH
T ss_pred ccHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC----------CHHHH
Confidence 56778888887773 34 677899999999999863 22211111 2367888888887631 12899
Q ss_pred HHHHHHHHHhcCC-hhhHH-HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851 134 KGSAFALGLLAVK-PEHQQ-LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (399)
Q Consensus 134 ~~a~~~L~~l~~~-~~~~~-~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (399)
..|+++++++... .+... .....-.++.+...+.+.+. +++..++.+|..++...+..-.......+++.
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 263 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--------RVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997622 21110 00011124444444433332 88999999999999655432111111156777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHH------------------HHHh---cCCHHHHHHhhcC-------CCH
Q 015851 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKN------------------QIVE---CNALPTLILMLRS-------EDS 263 (399)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~------------------~~~~---~~~~~~L~~ll~~-------~~~ 263 (399)
++..+.+.++.++..++..+..++.. ..... .+.+ ..++|.++..+.. ++.
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~ 342 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDE-EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHH-HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHH-HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccc
Confidence 77888888999999999999988862 10000 0111 2356667777743 234
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhh
Q 015851 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEML 342 (399)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll 342 (399)
.++..|+.+|..++...+.. +. ..+++.+...+.++++.++..|+.+|+.++.+.. +...... ..++|.++.++
T Consensus 343 ~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l 417 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELM 417 (462)
T ss_dssp SHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHh
Confidence 78999999999998643321 11 2356777788888999999999999999997532 2111111 56889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCC
Q 015851 343 QSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++++.||..|+++|++++...++
T Consensus 418 ~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 418 KDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999986654
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.38 E-value=3.2e-11 Score=118.47 Aligned_cols=300 Identities=17% Similarity=0.193 Sum_probs=182.4
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
+.+++.+...+ .+.++.+|..|++++.++.. +|+... +.+.++.+.++|.++++ .++..|+.
T Consensus 120 ~~l~~~l~~~L--~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~d~------------~V~~~A~~ 182 (591)
T 2vgl_B 120 EYLCEPLRKCL--KDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADSNP------------MVVANAVA 182 (591)
T ss_dssp HHHHHHHHHHS--SCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCSCH------------HHHHHHHH
T ss_pred HHHHHHHHHHc--CCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCCCh------------hHHHHHHH
Confidence 44455566666 46788999999999999987 355322 24678999999987665 78999999
Q ss_pred HHHHhc-CChhh---------HHHHHh----c------------------------CcHHHHHHHHhccccCccccccHH
Q 015851 139 ALGLLA-VKPEH---------QQLIVD----N------------------------GALSHLVNLLKRHMDSNCSRAVNS 180 (399)
Q Consensus 139 ~L~~l~-~~~~~---------~~~i~~----~------------------------~~i~~L~~~L~~~~~~~~~~~~~~ 180 (399)
+|..++ .+++. -..+.. . ..++.+..++++.+. .
T Consensus 183 aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~--------~ 254 (591)
T 2vgl_B 183 ALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANS--------A 254 (591)
T ss_dssp HHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTT--------H
T ss_pred HHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCCh--------H
Confidence 999999 44422 111111 0 112222222222222 8
Q ss_pred HHHHHHHHHHHHhhc---CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH---------------
Q 015851 181 VIRRAADAITNLAHE---NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--------------- 242 (399)
Q Consensus 181 ~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--------------- 242 (399)
++..+++++.++... ++.....+ .....+.|+.++. +++.++..|+.+|..+....++..
T Consensus 255 V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~ 332 (591)
T 2vgl_B 255 VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPI 332 (591)
T ss_dssp HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCH
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChH
Confidence 889999999998732 22222212 2345667776654 778999999999988885322211
Q ss_pred ---HH-------HHhcC----CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHH
Q 015851 243 ---NQ-------IVECN----ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (399)
Q Consensus 243 ---~~-------~~~~~----~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 308 (399)
.. +.... +++.|...+.+.+.+++..++++++.++...+... ...++.|+.++...+..++
T Consensus 333 ~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~ 407 (591)
T 2vgl_B 333 YVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVV 407 (591)
T ss_dssp HHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHH
Confidence 00 01111 23334444555667777777777777775433221 2246677777777666777
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCCCcchhHHHHH--hhccccHHH
Q 015851 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITVSVLPAILIFI--IINECQLEV 385 (399)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 385 (399)
.++..++.++....++. ...+++.|+..+. ..++.++..++|+|+.++...++ .+..+..+ ...+....+
T Consensus 408 ~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~~l~~l~~~~~~~~~~v 480 (591)
T 2vgl_B 408 QEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADELLESFLEGFHDESTQV 480 (591)
T ss_dssp HHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHHHHHHHSTTCSSSCHHH
T ss_pred HHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHHHHHHHHHhhccCCHHH
Confidence 77766777665444432 2456777878776 46788888888998888876654 23333222 122334567
Q ss_pred HHHHHhhhHhhhc
Q 015851 386 LAFVLSEMVLLFC 398 (399)
Q Consensus 386 ~~~~l~~~~~~~~ 398 (399)
..+++++++.++.
T Consensus 481 r~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 481 QLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766553
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.38 E-value=5.1e-11 Score=100.09 Aligned_cols=184 Identities=23% Similarity=0.242 Sum_probs=149.7
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L 140 (399)
...+.+.+.+ .+.++.+|..|++.|..+.. .+.++.|+++|.+++. .+|..++++|
T Consensus 14 ~~~~~~i~~L--~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~------------~vr~~a~~~L 69 (201)
T 3ltj_A 14 EKVEMYIKNL--QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA------------WVRRAAADAL 69 (201)
T ss_dssp HHHHHHHHHT--TCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH------------HHHHHHHHHH
T ss_pred cchHHHHHHh--cCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCH------------HHHHHHHHHH
Confidence 3344555555 45678899999999998754 2467889999987655 8999999999
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (399)
Q Consensus 141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (399)
+.+.. .+.++.|+..|.+.+. .++..++++|..+.. ...++.|+.++.+++
T Consensus 70 ~~~~~----------~~~~~~L~~~l~d~~~--------~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~ 120 (201)
T 3ltj_A 70 GQIGD----------ERAVEPLIKALKDEDG--------WVRQSAAVALGQIGD-----------ERAVEPLIKALKDED 120 (201)
T ss_dssp HHHCC----------GGGHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS
T ss_pred HhhCC----------HHHHHHHHHHHcCCCH--------HHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCC
Confidence 99863 2478889999987655 899999999998762 246788999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (399)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 300 (399)
+.++..++++|+.+.. .+.++.|..++.++++.++..|+++|+.+. .+. .++.|..++
T Consensus 121 ~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l 178 (201)
T 3ltj_A 121 WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GER---------VRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--chh---------HHHHHHHHH
Confidence 9999999999999864 247889999999999999999999999993 222 477888889
Q ss_pred cCCChHHHHHHHHHHHHhh
Q 015851 301 SSCCSESQREAALLLGQFA 319 (399)
Q Consensus 301 ~~~~~~v~~~a~~~L~~l~ 319 (399)
.++++.++..|..+|.++-
T Consensus 179 ~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 179 ETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHCCHHHHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 53
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.27 E-value=3.3e-11 Score=120.07 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=156.7
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHH-hcccCCCCcccccCCCcchHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSA 137 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~-~lL~~~~~~~~~~~~~~~~~~~~~~a~ 137 (399)
...++|.|.. + ++.++..|..|+++|.+++.++..+..+...|++..++ .+|.+++. ++|..|+
T Consensus 33 ~~~i~Pll~~-L--~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~A~ 97 (684)
T 4gmo_A 33 EDKILPVLKD-L--KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAAGW 97 (684)
T ss_dssp HHTTHHHHHH-H--SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHHHH
T ss_pred hhhHHHHHHH-c--CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHHHH
Confidence 3456777665 3 45677789999999999999999999999999998765 56777665 8999999
Q ss_pred HHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCc---------c----ccccHHHHHHHHHHHHHHhhcCchhHHH
Q 015851 138 FALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSN---------C----SRAVNSVIRRAADAITNLAHENSSIKTR 202 (399)
Q Consensus 138 ~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~---------~----~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 202 (399)
++|.||+ .+++.+..+...|++++|..++....... . .+..+++...++.+|++||..+......
T Consensus 98 gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~ 177 (684)
T 4gmo_A 98 EILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA 177 (684)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999 57899999999999999999987532110 0 0012356678899999999888777777
Q ss_pred HHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhh
Q 015851 203 VRMEGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~ 277 (399)
+...++++.++..|.+. ..+++..|+.+|.+++.++++....+.+.+....+..++ ...+...+..++++|.|+.
T Consensus 178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 88888999999988543 368999999999999998888888888876543322222 2233445777889999874
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.25 E-value=4.9e-10 Score=115.26 Aligned_cols=284 Identities=11% Similarity=0.067 Sum_probs=189.1
Q ss_pred hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (399)
Q Consensus 57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~ 134 (399)
..++.+++.|...+...+.++.+|..++.+|..++.. ++.... .-..+++.+.+.+.+++. ++++|.
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~----------~~~vr~ 192 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEP----------SNNVKL 192 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCS----------CHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCC----------CHHHHH
Confidence 3467788888887742211677899999999999863 322110 112456777777776532 127899
Q ss_pred HHHHHHHHhcC-ChhhH-HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851 135 GSAFALGLLAV-KPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (399)
Q Consensus 135 ~a~~~L~~l~~-~~~~~-~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (399)
.++++|.++.. ....- ........++.+...+.+.+. +++..++.+|..++...+..-.......+++.+
T Consensus 193 ~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~ 264 (876)
T 1qgr_A 193 AATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--------RVRVAALQNLVKIMSLYYQYMETYMGPALFAIT 264 (876)
T ss_dssp HHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999873 22111 011111245555555543333 889999999999997555432222333678888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChh---------------------hHHHHHhcCCHHHHHHhhcC-------CCHH
Q 015851 213 VELLEFTDTKVQRAAAGALRTLAFKNDE---------------------NKNQIVECNALPTLILMLRS-------EDSA 264 (399)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~---------------------~~~~~~~~~~~~~L~~ll~~-------~~~~ 264 (399)
+..+.+.++.++..++.++.+++..... ...... ...++.++..+.. ++..
T Consensus 265 ~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~ 343 (876)
T 1qgr_A 265 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWN 343 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCC
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccH
Confidence 8888888899999999999988853110 000011 2346677777752 3457
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhC
Q 015851 265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 265 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~ 343 (399)
+|..|..+|..++...+.. ++ ..+++.+...+.++++.+|..|+++++.++.+.. +...... ..+++.++..+.
T Consensus 344 ~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~ 418 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK 418 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC
Confidence 8999999999998542221 11 2356667777888899999999999999986543 3222222 347899999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCC
Q 015851 344 SPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
++++.+|..|+++|.+++...+
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999998754
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.22 E-value=3.6e-10 Score=111.42 Aligned_cols=273 Identities=14% Similarity=0.103 Sum_probs=189.4
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
+.+++.+...+ .+.++.+|..|+.++.++.. +|+... +.++.+..+|.+.++ .++..|+.
T Consensus 141 ~~l~~~l~~~L--~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~------------~V~~~Al~ 201 (618)
T 1w63_A 141 RDLAGEVEKLL--KTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNH------------GVLHTSVV 201 (618)
T ss_dssp HHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCH------------hHHHHHHH
Confidence 34456666666 45678899999999999887 465432 677888888887665 78889999
Q ss_pred HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccC---ccc----cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDS---NCS----RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~---~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
+|..++ .+++....+. ..++.++..|.+.... ... ....-.+..++.+|..++..++... ...++
T Consensus 202 ~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~ 274 (618)
T 1w63_A 202 LLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMND 274 (618)
T ss_dssp HHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHH
T ss_pred HHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHH
Confidence 999999 4454333332 4788888888752000 000 0001567778899999997655422 23445
Q ss_pred HHHHhhc------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851 211 PLVELLE------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 211 ~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (399)
.|..++. +.+..+...+++++..+.. .+... . .+++.|..++.+++++++..|+.+|..++...+.
T Consensus 275 ~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~----~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-- 346 (618)
T 1w63_A 275 ILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLR----V-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-- 346 (618)
T ss_dssp HHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHH----H-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHH----H-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--
Confidence 5555542 2346889999999998764 33221 1 3567888889989999999999999999854332
Q ss_pred HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
++ ......++..+.+++..++..|+.+|..++. +.+...+ ++.|...+.+.+.+++..++.+|+.++...
T Consensus 347 --~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 347 --AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp --HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred --HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 22 2356788889999999999999999999974 3333333 466777887789999999999999999875
Q ss_pred CCC---cchhHHHHH
Q 015851 365 TVS---VLPAILIFI 376 (399)
Q Consensus 365 ~~~---~~~~~~~~~ 376 (399)
+.. +++.++..+
T Consensus 417 ~~~~~~~v~~ll~lL 431 (618)
T 1w63_A 417 APSKRWHIDTIMRVL 431 (618)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH
Confidence 443 455555444
No 56
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.22 E-value=2.8e-10 Score=111.73 Aligned_cols=253 Identities=17% Similarity=0.136 Sum_probs=182.2
Q ss_pred hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (399)
++.+...|.-+...+..++. +++.. .-+++.+.+-|.++++ .+|..|+.+|+++. .++..+
T Consensus 59 ~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~ 120 (591)
T 2vgl_B 59 QTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITE 120 (591)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHH
T ss_pred CCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHH
Confidence 45667777777777777766 35542 2346777777877655 78889999999987 444433
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (399)
. .++.+.+++.+.+. .++..|+.++..+...++.. +...++++.+..+|.++++.++..|+.+|
T Consensus 121 ~-----l~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 121 Y-----LCEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAAL 184 (591)
T ss_dssp H-----HHHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred H-----HHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence 3 35678888876554 89999999999999866642 23356789999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (399)
Q Consensus 232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 311 (399)
..++...++........+.++.|+..+.+.++-.+...+.+++.++..++... ..+++.+..++++.++.++.+|
T Consensus 185 ~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea 259 (591)
T 2vgl_B 185 SEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSA 259 (591)
T ss_dssp HHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHH
T ss_pred HHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHH
Confidence 99997544321000112346667777777888888888999988875433322 2357788888999999999999
Q ss_pred HHHHHHhhcc---ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 312 ALLLGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 312 ~~~L~~l~~~---~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++++..+... +++..+.+. ..+.+.|+.++. +++.+|..|+.+|..++...+.
T Consensus 260 ~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~ 315 (591)
T 2vgl_B 260 VKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPE 315 (591)
T ss_dssp HHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChH
Confidence 9999998642 334433332 335677776664 7889999999999999876654
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.22 E-value=3.7e-10 Score=116.15 Aligned_cols=278 Identities=17% Similarity=0.159 Sum_probs=186.0
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHH-HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 135 (399)
..+.+++.+...+...+.+..+|..|+.+|..+... .... .......+++.+..++.+.+. ++|..
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~ 236 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVA 236 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHH
Confidence 445666666666643222577899999999998763 2211 111111256677777655443 89999
Q ss_pred HHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchh---------------
Q 015851 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--------------- 199 (399)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--------------- 199 (399)
++.+|..++ ..+..-...+....++.++..+.+.++ +++..++..+..++......
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCcc
Confidence 999999998 444432223333577777777765444 78888998888887532100
Q ss_pred ---HHHH--HhcCChHHHHHhhc-------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 015851 200 ---KTRV--RMEGGIPPLVELLE-------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (399)
Q Consensus 200 ---~~~~--~~~~~i~~L~~ll~-------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 267 (399)
.... .....++.++..+. ++++.+|..+..+|..++...++ .+.. .+++.+...+.+++..+|.
T Consensus 309 ~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~ 384 (876)
T 1qgr_A 309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHH
T ss_pred chhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHH
Confidence 0000 11234667777774 23467999999999999863222 1222 3567777788888999999
Q ss_pred HHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh---HHHHHhcCCHHHHHHhhC
Q 015851 268 EAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIVQRGAVRPLIEMLQ 343 (399)
Q Consensus 268 ~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l~~~g~v~~L~~ll~ 343 (399)
.|+++++.++.+.. ..... .-..+++.++..+.++++.++..|+++|++++...+.. ...+ ..+++.|+..+.
T Consensus 385 ~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~ 461 (876)
T 1qgr_A 385 AAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHc
Confidence 99999999986543 22222 22457889999999999999999999999998653321 1111 245778888887
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 015851 344 SPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~ 363 (399)
++ +.++..++++|.+++..
T Consensus 462 ~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHHH
Confidence 74 89999999999999976
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.20 E-value=8.2e-11 Score=120.84 Aligned_cols=278 Identities=14% Similarity=0.144 Sum_probs=187.1
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCCh--hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a 136 (399)
.+.+++.+...+ .+.+...|..|+++++.++.+. +....... .+++.++..+.+++. .+|..+
T Consensus 367 ~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~------------~vr~~a 431 (861)
T 2bpt_A 367 LEPVLEFVEQNI--TADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSL------------QVKETT 431 (861)
T ss_dssp HHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCH------------HHHHHH
T ss_pred HHHHHHHHHHHc--CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcH------------HHHHHH
Confidence 344555555555 3456778999999999999852 33322222 478888898887654 789999
Q ss_pred HHHHHHhcCC--hhh--HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-----chhHHHHHhcC
Q 015851 137 AFALGLLAVK--PEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-----SSIKTRVRMEG 207 (399)
Q Consensus 137 ~~~L~~l~~~--~~~--~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~ 207 (399)
+++|+.++.. +.. ...+ ...++.++..+.+. . .++..++++|.+++... ......+ ..
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~ 498 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PA 498 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HH
T ss_pred HHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HH
Confidence 9999999832 110 1111 12567777777653 2 89999999999998632 1121111 34
Q ss_pred ChHHHHHhhcCCC--HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC---------------CCHHHHHHHH
Q 015851 208 GIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAV 270 (399)
Q Consensus 208 ~i~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~---------------~~~~v~~~a~ 270 (399)
.++.++..+.+.+ +.++..++.+++.++...+........ ..+|.++..+.. ....++..++
T Consensus 499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence 5677888887544 789999999999999754443333333 256666666542 1346788999
Q ss_pred HHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh-HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHH
Q 015851 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (399)
Q Consensus 271 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v 349 (399)
.+|++++...+...... -..+++.++..++..+. .++..++.+++.++.........+.. .++|.+...+.++++.+
T Consensus 578 ~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 578 TVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHH
Confidence 99999986443321111 12457777888887766 88999999999988543333222222 36888999998888999
Q ss_pred HHHHHHHHHHhhccCCCC
Q 015851 350 REMSAFALGRLAQVITVS 367 (399)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~ 367 (399)
+..+..++..++...+..
T Consensus 656 r~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 656 SITAVGFIADISNSLEED 673 (861)
T ss_dssp HHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHhchh
Confidence 999999999999877654
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.19 E-value=5.5e-09 Score=107.20 Aligned_cols=280 Identities=11% Similarity=0.108 Sum_probs=185.1
Q ss_pred hhhhHHHHhhhhhcchhh-hHHHHHHHHHHHHHHcCC--hhHH--HHHHhCCChHHHHhcccCCCCcccccCCCcchHHH
Q 015851 58 EVSAQVNVLNTTFSWLEA-DRAAAKRATHVLAELAKN--EEVV--NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~-~~~~~~~a~~~L~~l~~~--~~~~--~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~ 132 (399)
.++.+++.|...+. +. ++..+..++.++..++.. ++.+ .. ....+++.+...+.++.. ++++
T Consensus 131 ~w~~ll~~L~~~l~--~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~----------~~~v 197 (861)
T 2bpt_A 131 AWPELMKIMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTET----------SKAV 197 (861)
T ss_dssp CCHHHHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCC----------CHHH
T ss_pred ccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCC----------CHHH
Confidence 45678888887773 34 677899999999999874 2211 00 012346667777776521 1389
Q ss_pred HHHHHHHHHHhcC-ChhhH-HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 133 EKGSAFALGLLAV-KPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 133 ~~~a~~~L~~l~~-~~~~~-~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
|..++.+|..+.. -...- ........++.+...+.+.+. +++..++.+|..++...+..-........++
T Consensus 198 r~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~--------~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~ 269 (861)
T 2bpt_A 198 RLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI--------EVQAAAFGCLCKIMSKYYTFMKPYMEQALYA 269 (861)
T ss_dssp HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998752 11110 000011245555555544433 8899999999999864432211122225677
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChh-----------------hHHHHHhcCCHHHHHHhhcCC-------CHHHH
Q 015851 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDE-----------------NKNQIVECNALPTLILMLRSE-------DSAIH 266 (399)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-----------------~~~~~~~~~~~~~L~~ll~~~-------~~~v~ 266 (399)
.+...+.+.++.++..++.++..++..... ...... ..++|.++..+... +..++
T Consensus 270 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r 348 (861)
T 2bpt_A 270 LTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVS 348 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHH
Confidence 778888888999999999999998863111 111112 34677888877642 34799
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCC
Q 015851 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSP 345 (399)
Q Consensus 267 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~ 345 (399)
..+..+|..++...+.... ..+++.+...+.+.++.++..|+++++.++.+.. +....... .+++.|+..+.++
T Consensus 349 ~~a~~~L~~l~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~ 423 (861)
T 2bpt_A 349 MSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ 423 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHccHhHH----HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC
Confidence 9999999999853221111 1246677777788889999999999999986532 33333332 4788999999999
Q ss_pred CHHHHHHHHHHHHHhhccC
Q 015851 346 DVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~ 364 (399)
++.+|..++++++.++...
T Consensus 424 ~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999763
No 60
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.18 E-value=1.6e-10 Score=115.06 Aligned_cols=194 Identities=13% Similarity=0.117 Sum_probs=150.5
Q ss_pred hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH-HhccccCccccccHHHHHH
Q 015851 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNL-LKRHMDSNCSRAVNSVIRR 184 (399)
Q Consensus 106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~-L~~~~~~~~~~~~~~~~~~ 184 (399)
+.++++.|++++. +.|..|+++|++|+.++..+..+...+++..++.- |.+.+. +++..
T Consensus 36 i~Pll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~ 95 (684)
T 4gmo_A 36 ILPVLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAA 95 (684)
T ss_dssp THHHHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHH
T ss_pred HHHHHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHH
Confidence 4456677888777 67889999999999999999999999999887664 555544 99999
Q ss_pred HHHHHHHHhhc-CchhHHHHHhcCChHHHHHhhcCCC---------------------HHHHHHHHHHHHHhhcCChhhH
Q 015851 185 AADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKNDENK 242 (399)
Q Consensus 185 a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~L~~~~~~~~ 242 (399)
++++|.||+.+ .+.+...+...|+++.|..++.... ..+...++.+|++|+.++.+..
T Consensus 96 A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~ 175 (684)
T 4gmo_A 96 GWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH 175 (684)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999965 4566777888899999998875311 2345678899999998778888
Q ss_pred HHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh--hcCCChHHHHHHHHHHHH
Q 015851 243 NQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL--LSSCCSESQREAALLLGQ 317 (399)
Q Consensus 243 ~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l--L~~~~~~v~~~a~~~L~~ 317 (399)
..+...+.++.|+..|.+ ...+++..|+.+|.+++..++.....+.+.+....+..+ +...+...+..++++|.|
T Consensus 176 ~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~N 255 (684)
T 4gmo_A 176 EAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHN 255 (684)
T ss_dssp HHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 888888999999988853 246899999999999998888887777776654332222 223333456778899988
Q ss_pred hh
Q 015851 318 FA 319 (399)
Q Consensus 318 l~ 319 (399)
+.
T Consensus 256 i~ 257 (684)
T 4gmo_A 256 VF 257 (684)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.18 E-value=3.1e-10 Score=107.84 Aligned_cols=310 Identities=11% Similarity=0.061 Sum_probs=197.5
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCCh--hHHHH----------HHhCCChHHHHhcccCCCCcccccCCCc
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNW----------IVEGGAVPALVKHLQAPPTSEADRNLKP 127 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~----------~~~~g~l~~L~~lL~~~~~~~~~~~~~~ 127 (399)
+.+...|..++...+.+..+|..|+..|.++.... ..... -....+-..++..|.+++..
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~-------- 105 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYR-------- 105 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS--------
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCch--------
Confidence 44455555555434456789999999999987531 10000 00112344567777776653
Q ss_pred chHHHHHHHHHHHHHhcCC--hhhHHHHHhcCcHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHhhcC-chhHHH
Q 015851 128 FEHEVEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTR 202 (399)
Q Consensus 128 ~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~i~~L~~~L~~~--~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 202 (399)
+ ..++.+++.++.. |.. .-.+.++.|+..+.+. +. .++..++.+|..++... +..-..
T Consensus 106 ----v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 106 ----P-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp ----S-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred ----h-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhhHh
Confidence 3 4788899988832 321 1256889999999876 33 78899999999999643 211111
Q ss_pred HHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhhHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 203 VRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 203 ~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (399)
. ...+++.++..+.++ ++.+|..|++++.++.....+... .....-+++.+...+.+++++++..++.+|..++..
T Consensus 169 ~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 169 K-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp G-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 1 124678888889887 799999999999998753222110 011111466667777888999999999999999864
Q ss_pred ChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh-----------------HHHHHh---cCCHHHHH
Q 015851 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-----------------KVHIVQ---RGAVRPLI 339 (399)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----------------~~~l~~---~g~v~~L~ 339 (399)
.+......+..++++.++..+.+.++.++..|+..+..++...... ...+.. ..++|.++
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 248 YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 4332111111156777777788888999999999999887531000 000111 33567777
Q ss_pred HhhCC-------CCHHHHHHHHHHHHHhhccCCCCcchhHHHHH--hhccccHHHHHHHHhhhHh
Q 015851 340 EMLQS-------PDVQLREMSAFALGRLAQVITVSVLPAILIFI--IINECQLEVLAFVLSEMVL 395 (399)
Q Consensus 340 ~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 395 (399)
+.+.. .+..+|..|..+|..++...+..+++.++..+ .+.+...+++..++..+..
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~ 392 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 77743 24578999999999999987766666555444 3455566666666655543
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.17 E-value=1.2e-09 Score=107.63 Aligned_cols=270 Identities=18% Similarity=0.178 Sum_probs=188.7
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~ 151 (399)
.+.++.+|..|+++|+++.. ++.. ..+++.+..+|.+.++ .+|..|+.++.++. .+|+..+
T Consensus 117 ~~~n~~vr~lAL~~L~~i~~-~~~~-----~~l~~~l~~~L~~~~~------------~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMGS-SEMC-----RDLAGEVEKLLKTSNS------------YLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHCC-HHHH-----HHHHHHHHHHHHSCCH------------HHHHHHHHHHHHHHHHCGGGGG
T ss_pred CCCCHhHHHHHHHHHHhcCC-HHHH-----HHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHChHHHH
Confidence 45677788899999999874 3332 2457888889988765 89999999999999 6665432
Q ss_pred HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-------------
Q 015851 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------------- 218 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------- 218 (399)
++++.+..++.+.+. .++..++.+|..++..++.....+ ...+|.++.+|.+
T Consensus 179 -----~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp -----GGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred -----HHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCcccccc
Confidence 567777777776554 889999999999996554432222 3678888877653
Q ss_pred --CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851 219 --TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (399)
Q Consensus 219 --~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (399)
.++-.+..++.+|+.++..+++.. ....+.|..++. +.+..+...|++++..+.. .+....
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~----- 312 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV----- 312 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----
Confidence 478889999999999997554432 234555555553 2345899999999999853 232211
Q ss_pred CCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-cc
Q 015851 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-VL 369 (399)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 369 (399)
.+++.|..++.++++.++..|+.+|..++...+. .+. ...+.++.++.+++..++..|..+|..++....-. ++
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv 387 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMM 387 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHH
Confidence 3567888889988999999999999999854332 222 24678899999999999999999999999865421 23
Q ss_pred hhHHHHHhhccccHHHHHHHHhhh
Q 015851 370 PAILIFIIINECQLEVLAFVLSEM 393 (399)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~l~~~ 393 (399)
+.+... +.+...++...+...+
T Consensus 388 ~eL~~~--l~~~d~e~r~~~v~~I 409 (618)
T 1w63_A 388 KELLYF--LDSCEPEFKADCASGI 409 (618)
T ss_dssp HHHHHH--HHHCCHHHHHHHHHHH
T ss_pred HHHHHH--HHhCCHHHHHHHHHHH
Confidence 333322 2334445554444443
No 63
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.08 E-value=5.8e-08 Score=76.61 Aligned_cols=217 Identities=19% Similarity=0.196 Sum_probs=171.1
Q ss_pred HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (399)
Q Consensus 101 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~ 179 (399)
.+..++..++.+|.++-. .++.+|..++..++ ..|+..+. .+..|+-+++.+...
T Consensus 29 ~d~~~l~~lI~~LDDDlw------------tV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaI------- 84 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLW------------TVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAI------- 84 (253)
T ss_dssp HCHHHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSH-------
T ss_pred hhHHHHHHHHHHhccHHH------------HHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccC-------
Confidence 345678888999987654 78999999999999 77777664 456777777766553
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
.+......+++.++...|..- .+.+|.+..-..-+++.++....++|..+...+|.....+ +.-+..++.
T Consensus 85 pltqeIa~a~G~la~i~Pe~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt 154 (253)
T 2db0_A 85 PLTQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS 154 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS
T ss_pred chHHHHHHHHhHHHHhCHHHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc
Confidence 676778899999998777532 3568888888888999999999999999998888765543 455888999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~ 339 (399)
+++..=+..|+..++.+..+...+ -..++|.|+.+|...+.-+|..|..+|.+++..++..++.+. .-+
T Consensus 155 skd~~Dkl~aLnFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl 223 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRL 223 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHH
T ss_pred CCChHHHHHHHHHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHH
Confidence 999888888888888886443332 245799999999999999999999999999988887665433 345
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhc
Q 015851 340 EMLQSPDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 340 ~ll~~~~~~v~~~a~~~L~~l~~ 362 (399)
.-+.+.+..+.+....+|..+.-
T Consensus 224 ~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 224 EELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHH
Confidence 56678899999999999988763
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.91 E-value=1.9e-08 Score=107.32 Aligned_cols=265 Identities=15% Similarity=0.113 Sum_probs=179.5
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhH-HHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC-ChhhH
Q 015851 73 LEADRAAAKRATHVLAELAKNEEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KPEHQ 150 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~ 150 (399)
.+.|..+|..|...|.+....+.. ...-....+++.+++.|.+.+. .+|..|+.+|+.++. .++
T Consensus 16 ~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 16 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHHHHHHHHHTTSCH--
T ss_pred CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHhCCH--
Confidence 456788899999988887653211 0000111347778888875544 899999999999983 222
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH-----HHHHhcCChHHHHHhhc-CCCHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPPLVELLE-FTDTKVQ 224 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~v~ 224 (399)
..+ ..+++.++..+.+.+. .++..++.+|..++....... ..-.....+|.|...+. ++++.++
T Consensus 82 ~~~--~~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~ 151 (1230)
T 1u6g_C 82 YQV--ETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ 151 (1230)
T ss_dssp HHH--HHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHH--HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence 111 1256677777766554 788889999999886443210 11123467899999998 5789999
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC
Q 015851 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 304 (399)
Q Consensus 225 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 304 (399)
..|+.+|..++...+....... ...++.+...+.++++.+|..|+.+++.++...+.. + -...++.++..|...+
T Consensus 152 ~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKND 226 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCC
Confidence 9999999999853222111111 235677788888889999999999999998653321 1 2345778888776443
Q ss_pred -hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 305 -SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 305 -~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
..++..++.+++.++...+...... -..+++.++..+.+.++.+|..+..++..++...+..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 4567778888888875433321111 1467899999999889999999999999999877765
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.87 E-value=2.3e-08 Score=86.44 Aligned_cols=189 Identities=14% Similarity=0.227 Sum_probs=139.7
Q ss_pred HHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh
Q 015851 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKND 239 (399)
Q Consensus 161 ~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~ 239 (399)
.+.+.+.+.+. ..+..++..|..+....+.....- -..+++.|...+. +.+..++..|+.+++.|+..-.
T Consensus 19 ~l~~~l~s~~w--------~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 19 DFYDKLEEKKW--------TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp THHHHHTCSSH--------HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhhhccCCH--------HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 35566655444 888999999999986533211000 0234677888884 8899999999999999996432
Q ss_pred hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
........ .++|.++..+.+.++.+|..|..+|.+++...+ . . .+++.+...+++.++.++..++..|..+.
T Consensus 90 ~~~~~~~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 90 KRFSNYAS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp GGGHHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22223333 378999999999999999999999999986432 1 1 25788889999999999999999999965
Q ss_pred cc-Chhh-HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 320 AT-DSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 320 ~~-~~~~-~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.. +++. ...... .++|.|..++.++++++|..|..+++.++..-++.
T Consensus 162 ~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 162 TRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp TTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 44 2331 122222 57899999999999999999999999999877754
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.82 E-value=2.9e-06 Score=67.02 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=165.6
Q ss_pred chHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCc
Q 015851 49 SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP 127 (399)
Q Consensus 49 ~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~ 127 (399)
.|+......+-.++++.+.+.+ +++-..+|..|+..+..++.. |+....+ +..|+.+++.+..-
T Consensus 20 ~~eii~~a~~d~~~l~~lI~~L--DDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaI-------- 84 (253)
T 2db0_A 20 LEKILIMAKYDESVLKKLIELL--DDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAI-------- 84 (253)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSH--------
T ss_pred HHHHHHHHHhhHHHHHHHHHHh--ccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccC--------
Confidence 3444444556777787777776 444457899999999999996 7776655 56677777765542
Q ss_pred chHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 015851 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (399)
Q Consensus 128 ~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (399)
.+-+...++++.++ .+|+.... .+|.+..-..-.++ .++....++|..++..+|..- .
T Consensus 85 ---pltqeIa~a~G~la~i~Pe~v~~-----vVp~lfanyrigd~--------kikIn~~yaLeeIaranP~l~-----~ 143 (253)
T 2db0_A 85 ---PLTQEIAKAFGQMAKEKPELVKS-----MIPVLFANYRIGDE--------KTKINVSYALEEIAKANPMLM-----A 143 (253)
T ss_dssp ---HHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHSCCCSH--------HHHHHHHHHHHHHHHHCHHHH-----H
T ss_pred ---chHHHHHHHHhHHHHhCHHHHHh-----hHHHHHHHHhcCCc--------cceecHHHHHHHHHHhChHHH-----H
Confidence 45457889999999 77766543 35566555555543 889999999999999888643 3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
+++.-+..++.++|..=+..|+..+..+......+ +. .++|.|..+|.+.+.-||..|..+|.+++..++..+..
T Consensus 144 ~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~y----v~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki 218 (253)
T 2db0_A 144 SIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKY----VN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV 218 (253)
T ss_dssp HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHH----HG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccc----cC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence 45667889999999888888888888777633322 22 37999999999999999999999999999887775543
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
+..-+.-++.++..++...-..|+.++.
T Consensus 219 ------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 219 ------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3344555777777888777777777764
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.80 E-value=1e-06 Score=86.69 Aligned_cols=248 Identities=17% Similarity=0.178 Sum_probs=163.0
Q ss_pred hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcc--cCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh
Q 015851 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHL--QAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH 149 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~ 149 (399)
.+.++.+|--|+.+|+++.. ++... .+++.+.+++ .+.++ .+|..|+.++.++. .+|+.
T Consensus 121 ~~~n~~ir~lALr~L~~i~~-~e~~~-----~l~~~v~~~l~~~d~~~------------~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVGS-REMAE-----AFAGEIPKILVAGDTMD------------SVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHCC-HHHHH-----HHTTHHHHHHHCSSSCH------------HHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHhhccCC-HHHHH-----HHHHHHHHHHhCCCCCH------------HHHHHHHHHHHHHHHhChhh
Confidence 45678889999999999954 44433 3478888888 55554 89999999999999 56654
Q ss_pred HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH----hhcCC------
Q 015851 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE----LLEFT------ 219 (399)
Q Consensus 150 ~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~~~------ 219 (399)
.. ..++++.+.++|.+.+. .++..++.++..++..++... ...+|.++. ++..+
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~--------~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~ 246 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHL--------GVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQD 246 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCST
T ss_pred cC---chhHHHHHHHHhCCCCc--------cHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccc
Confidence 32 24789999999976554 889999999999997665421 123333333 33221
Q ss_pred -------CHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHhhc---------CCCH--HHHHHHHHHHHHhhcCC
Q 015851 220 -------DTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR---------SEDS--AIHYEAVGVIGNLVHSS 280 (399)
Q Consensus 220 -------~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~L~~ll~---------~~~~--~v~~~a~~~L~~l~~~~ 280 (399)
++-.+...+..|..+... +++....+.+ .++.++..+. +.+. .+..+++.++..+.. .
T Consensus 247 ~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~ 323 (621)
T 2vgl_A 247 YTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-E 323 (621)
T ss_dssp TEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-c
Confidence 567888888888887752 2333333333 2333333221 1122 777788888887752 2
Q ss_pred hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 015851 281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGR 359 (399)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~ 359 (399)
+.... .++..|..+|.++++.++-.|+.+|..++...+. ...+. ...+.++..+. ++|..++..+...|..
T Consensus 324 ~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 324 PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 32222 2456777788778888888888888888765432 12222 24667777777 7888888888888888
Q ss_pred hhccCC
Q 015851 360 LAQVIT 365 (399)
Q Consensus 360 l~~~~~ 365 (399)
++....
T Consensus 396 l~~~~N 401 (621)
T 2vgl_A 396 MCDRSN 401 (621)
T ss_dssp HCCHHH
T ss_pred HcChhh
Confidence 885543
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.79 E-value=4.3e-07 Score=96.90 Aligned_cols=281 Identities=16% Similarity=0.095 Sum_probs=176.7
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--h---------------hHHH--HHHhCCChHHHHhcccCCCCcc
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--E---------------EVVN--WIVEGGAVPALVKHLQAPPTSE 120 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~---------------~~~~--~~~~~g~l~~L~~lL~~~~~~~ 120 (399)
+.+++.+...+ .+.+..+|..++.++..+... . .... .-.-..+++.+.+.+.+++.
T Consensus 373 ~~l~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~-- 448 (1230)
T 1u6g_C 373 KTVSPALISRF--KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV-- 448 (1230)
T ss_dssp TTTHHHHHSTT--SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH--
T ss_pred HHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH--
Confidence 33445444443 344567888888888776541 0 0011 11122355666666776554
Q ss_pred cccCCCcchHHHHHHHHHHHHHhc-CChhh-HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch
Q 015851 121 ADRNLKPFEHEVEKGSAFALGLLA-VKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198 (399)
Q Consensus 121 ~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~-~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 198 (399)
.+|..++.+|+.++ ..+.. ...+ ...++.++..|.+..... +++..++..+..+......
T Consensus 449 ----------~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~------~v~~~a~~~l~~~~~~~~~ 510 (1230)
T 1u6g_C 449 ----------KTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSS------NLKIDALSCLYVILCNHSP 510 (1230)
T ss_dssp ----------HHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCH------HHHHHHHHHHHHHHHSSCG
T ss_pred ----------HHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcc------hHHHHHHHHHHHHHHhCCH
Confidence 67888999999887 32221 1111 235677778887654311 7888899999888753222
Q ss_pred hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-------hHHHHHhcCCHHHHHHhh--cCCCHHHHHHH
Q 015851 199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-------NKNQIVECNALPTLILML--RSEDSAIHYEA 269 (399)
Q Consensus 199 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-------~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a 269 (399)
......-...+|.++..+.+.+..++..+++++..++..... ....+.+ .+++.++..+ .+.+.++|..|
T Consensus 511 ~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-~ll~~ll~~l~~~d~~~~vr~~a 589 (1230)
T 1u6g_C 511 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK-DLFTCTIKRLKAADIDQEVKERA 589 (1230)
T ss_dssp GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH-HHHHHHHHHHSCSSSCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH-HHHHHHHHHHhccCCCHHHHHHH
Confidence 111123357899999999998899998999999988842111 1112222 3677788888 56788999999
Q ss_pred HHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCCCHH
Q 015851 270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQ 348 (399)
Q Consensus 270 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~~~~ 348 (399)
+.+++.++.......... -..+++.|...+.+. ..+..++.++..++.... .... -+-..+++.|...+.+.+..
T Consensus 590 ~~~lg~L~~~~g~~~~~~-~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~-~~~~~i~~~L~~~l~~~~~~ 665 (1230)
T 1u6g_C 590 ISCMGQIICNLGDNLGSD-LPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRA 665 (1230)
T ss_dssp HHHHHHHHHHTGGGCCTH-HHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCH-HHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHhCchhhhh-HHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchH-HHHHHHHHHHHHHHHhCCHH
Confidence 999999985432211100 012344455555433 467788889988874311 1111 22244688899999999999
Q ss_pred HHHHHHHHHHHhhccCCCC
Q 015851 349 LREMSAFALGRLAQVITVS 367 (399)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~ 367 (399)
+|.+++.++..++...+..
T Consensus 666 ~r~~a~~al~~l~~~~~~~ 684 (1230)
T 1u6g_C 666 LKLGTLSALDILIKNYSDS 684 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999999999888754
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.79 E-value=5.9e-07 Score=74.01 Aligned_cols=198 Identities=17% Similarity=0.104 Sum_probs=153.7
Q ss_pred CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (399)
Q Consensus 157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (399)
+.+..|..+|...++ .++..++.+|..+...-+..-....-..+++.++.++.+.|..+.-.|+++|..|..
T Consensus 33 ~~l~~L~~LL~dkD~--------~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 33 RALFLILELAGEDDE--------TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHTTSSCH--------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccch--------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 367888888876665 899999999999997655544445556789999999999999999999999999998
Q ss_pred CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHH
Q 015851 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 316 (399)
+.|-....+.. ....|..++.++++-++.+|+..++.+-..+... +++..+.+++.+.+..++..|..++.
T Consensus 105 ~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 105 DVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp TCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 76655555554 3677889999999999999999999994332221 24677888889999999999999999
Q ss_pred HhhccCh--hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC-CCcchhHHHHH
Q 015851 317 QFAATDS--DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT-VSVLPAILIFI 376 (399)
Q Consensus 317 ~l~~~~~--~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~ 376 (399)
+++.... +.. .+++.-+-.++++.|+.+++.|..++-.+....- ..+++.+...+
T Consensus 176 eia~~S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~ 233 (265)
T 3b2a_A 176 NMLNSSADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKIS 233 (265)
T ss_dssp HHGGGCSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHH
T ss_pred HhhcccCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHH
Confidence 9997542 222 2345567788999999999999999998886543 33455444433
No 70
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.77 E-value=5.5e-07 Score=88.55 Aligned_cols=278 Identities=16% Similarity=0.156 Sum_probs=182.0
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~ 139 (399)
.+++.+.+.+...+.++.+|..|+.++.++.. +|+... ..+.++.+.++|.+.++ .++..|+.+
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~------------~V~~~a~~~ 210 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHL------------GVVTAATSL 210 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCc------------cHHHHHHHH
Confidence 34444444442246788999999999999988 465432 24889999999987665 788999999
Q ss_pred HHHhc-CChhhHHHHHhcCcHHHHHHHHh----ccccC-cc----ccccHHHHHHHHHHHHHHhhc-CchhHHHHHhcCC
Q 015851 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLK----RHMDS-NC----SRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGG 208 (399)
Q Consensus 140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~----~~~~~-~~----~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~ 208 (399)
|..++ .++..- ...++.+++.|. ....+ .. .-+..-.+...+..|..++.. ++.....+.+ .
T Consensus 211 l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~ 283 (621)
T 2vgl_A 211 ITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--C 283 (621)
T ss_dssp HHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--H
T ss_pred HHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--H
Confidence 99998 555421 124455554443 21110 00 000014666777777777753 3333332322 2
Q ss_pred hHHHHHhh---------cCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 209 IPPLVELL---------EFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (399)
Q Consensus 209 i~~L~~ll---------~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (399)
+..++..+ .+.+. .+...+..++..+.. .++... .++..|..++.+++++++..++.+|..++
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~ 357 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLA 357 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 33344322 22233 788888999988864 333222 24667888888899999999999999998
Q ss_pred cCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHH
Q 015851 278 HSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~ 356 (399)
...+.. . ++ ......++..|. +++..++..++..|..++ ++.+...+ +..|...+.+.+.+.+..++.+
T Consensus 358 ~~~~~~-~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~--~~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 358 SSEFSH-E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMC--DRSNAQQI-----VAEMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp TCTTTH-H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC--CHHHHHHH-----HHHHHHHHHHCCHHHHHHHHHH
T ss_pred hccCcH-H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc--ChhhHHHH-----HHHHHHHHHhcCHHHHHHHHHH
Confidence 654321 1 22 345778888888 889999999999999997 35554444 4457777777899999999999
Q ss_pred HHHhhccCCCC---cchhHHHHH
Q 015851 357 LGRLAQVITVS---VLPAILIFI 376 (399)
Q Consensus 357 L~~l~~~~~~~---~~~~~~~~~ 376 (399)
++.++...+.. ++..++..+
T Consensus 428 I~~la~k~~~~~~~~v~~Ll~ll 450 (621)
T 2vgl_A 428 VAILAEKYAVDYTWYVDTILNLI 450 (621)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999765443 344444444
No 71
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.72 E-value=8.8e-10 Score=85.62 Aligned_cols=122 Identities=22% Similarity=0.218 Sum_probs=93.3
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (399)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (399)
....++.+..+|+++++.+|..|+++|+.+.. ..++.|+.+|.++++.+|..|+++|+++. ++.
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~~-- 73 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DER-- 73 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SHH--
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CHH--
Confidence 34678889999999999999999998886643 13688999999999999999999999985 222
Q ss_pred HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 360 (399)
.++.|+..+.++++.++..|+++|+++. ++ ..++.|..+++++++.|+..|..+|..|
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3788899999999999999999999984 22 2478899999999999999999998653
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.4e-07 Score=81.53 Aligned_cols=189 Identities=8% Similarity=0.085 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHH-HhhcCchhHHHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCh-hhHH-HHHhcCCHHHH
Q 015851 180 SVIRRAADAITN-LAHENSSIKTRVRM-EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND-ENKN-QIVECNALPTL 254 (399)
Q Consensus 180 ~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~-~~~~-~~~~~~~~~~L 254 (399)
.-+..++..|.. ++...+........ ...+..|...+ .+.+..++..|+.+|+.|+.+-. .... .... .++|.+
T Consensus 31 ~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~l 109 (249)
T 2qk1_A 31 KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTPL 109 (249)
T ss_dssp HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHHH
Confidence 777888888888 87543332100000 13466777788 68899999999999999996432 2222 2222 268899
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChh---hHHHHHh
Q 015851 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD---CKVHIVQ 331 (399)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~ 331 (399)
+..+.+..+.|+..+..++..++...+.......-..+++.|+..|++.++.++..++.+|..++...+. .....+.
T Consensus 110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 9999999999999999999988854311000000012577888889999999999999999999865432 2223333
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL 369 (399)
Q Consensus 332 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (399)
..++|.|.+++.++++.||..|..++..++..-+++.+
T Consensus 190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 190 DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 57899999999999999999999999999988887633
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.65 E-value=2.2e-05 Score=78.90 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=165.1
Q ss_pred HHHHhhhhhcchh------hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851 62 QVNVLNTTFSWLE------ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (399)
Q Consensus 62 ~~~~L~~~l~~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 135 (399)
.+..|...+...+ ....+|..|+..|+-+..+.... .+++.|...+.+++. .++..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~------------~~~~~ 491 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSA------------TSGEA 491 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCH------------HHHHH
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCH------------HHHHH
Confidence 5666666663221 13568888888988875432111 125567777776554 45668
Q ss_pred HHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 136 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (399)
|+.+|+.+.....+.+ ++..|++.+.+...+ .+++.++..|+.+....+. .++.+++.
T Consensus 492 AalALGli~vGTgn~~------ai~~LL~~~~e~~~e-------~vrR~aalgLGll~~g~~e---------~~~~li~~ 549 (963)
T 4ady_A 492 AALGMGLCMLGTGKPE------AIHDMFTYSQETQHG-------NITRGLAVGLALINYGRQE---------LADDLITK 549 (963)
T ss_dssp HHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCH-------HHHHHHHHHHHHHTTTCGG---------GGHHHHHH
T ss_pred HHHHHhhhhcccCCHH------HHHHHHHHHhccCcH-------HHHHHHHHHHHhhhCCChH---------HHHHHHHH
Confidence 8899998753222222 456666666544332 8889899999988755543 35566666
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851 216 LE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (399)
Q Consensus 216 l~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (399)
|. +.++-+|..++.+++--..+.... ..++.|+..+ .+.+..+|..|+.+|+.+..+.+ ..+
T Consensus 550 L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v 613 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTV 613 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHH
Confidence 65 467888888887776444321111 1355455444 45678999999999999886654 246
Q ss_pred HHHHHhh-cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 294 QPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 294 ~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
+.++.+| ++.++.+|..|+++|+.++.+++.. .+++.|..++++.+..||+.|+.+|+.+.....+.
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 6666654 5788999999999999998765432 13667888899999999999999999999887776
No 74
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.63 E-value=5.8e-06 Score=76.29 Aligned_cols=232 Identities=17% Similarity=0.107 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHHHhccccCc---------cccccHHHHHHHHHHHHHHhhcCchh
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSN---------CSRAVNSVIRRAADAITNLAHENSSI 199 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~--~i~~L~~~L~~~~~~~---------~~~~~~~~~~~a~~~L~~l~~~~~~~ 199 (399)
+.+.-++.+|..|...+++|..+.+.+ .++.++.++...-+.. .......++..++.++|-|+. ++..
T Consensus 183 ~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~ 261 (480)
T 1ho8_A 183 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHH
T ss_pred chHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHH
Confidence 345578999999999999999998654 4677776655431100 111134789999999999995 4445
Q ss_pred HHHHHhcCCh--HHHHHhhcCC-CHHHHHHHHHHHHHhhcCChh----hHH-HHHhcCCHHHHHHhhcC---CCHHHHHH
Q 015851 200 KTRVRMEGGI--PPLVELLEFT-DTKVQRAAAGALRTLAFKNDE----NKN-QIVECNALPTLILMLRS---EDSAIHYE 268 (399)
Q Consensus 200 ~~~~~~~~~i--~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~----~~~-~~~~~~~~~~L~~ll~~---~~~~v~~~ 268 (399)
...+...+.. +.|+..++.. .+++.+.++.+|.|+....++ ... .++..++++ ++..|.. .|+++...
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~ed 340 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQD 340 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHH
Confidence 5555544433 5666667654 489999999999999985421 122 233344444 5555543 46655543
Q ss_pred HHHHHHHhhc------CChhHHHH----------------HHH----------CCCcHHHHHhhcC----------CChH
Q 015851 269 AVGVIGNLVH------SSPNIKKE----------------VLA----------AGALQPVIGLLSS----------CCSE 306 (399)
Q Consensus 269 a~~~L~~l~~------~~~~~~~~----------------~~~----------~~~l~~L~~lL~~----------~~~~ 306 (399)
.-.....|-. +.+++..+ +.. ..++..|+++|.+ .++.
T Consensus 341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~ 420 (480)
T 1ho8_A 341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI 420 (480)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence 3322221110 01122222 221 1257888999973 3567
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 307 v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
+..-||.=|+.++...|.++..+-+.|+-..+.+++.++|++|+..|..|+..+..+.
T Consensus 421 ~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 421 IIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred eEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999999999999999999999999999999999876543
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.58 E-value=2e-06 Score=79.34 Aligned_cols=233 Identities=19% Similarity=0.178 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhCC--ChHHHHhcccCC----CCc-ccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851 80 AKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAP----PTS-EADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL 152 (399)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~----~~~-~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (399)
+.-++.+|..+...+++|..+.+.+ .++.++.++... ... .....+......++.+++.+++-|+.+++..+.
T Consensus 185 ~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~ 264 (480)
T 1ho8_A 185 CYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANE 264 (480)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5578999999999999999998764 366676544421 100 000001122457899999999999999888888
Q ss_pred HHhcCcH--HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-----hHHHHHhcCChHHHHHhhcC---CCHH
Q 015851 153 IVDNGAL--SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-----IKTRVRMEGGIPPLVELLEF---TDTK 222 (399)
Q Consensus 153 i~~~~~i--~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~~i~~L~~ll~~---~~~~ 222 (399)
+...+.. +.|+..++....+ .+.+.++.+|.|+....+. ..+.+...++ +.++..|.. .|++
T Consensus 265 l~~~~i~~~~~L~~i~k~s~KE-------KvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Ded 336 (480)
T 1ho8_A 265 LVQKYLSDFLDLLKLVKITIKE-------KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEE 336 (480)
T ss_dssp HHTTSHHHHHHHHHHHHHCCSH-------HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHH
T ss_pred HHhcchHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHH
Confidence 8877643 5677777776655 8999999999999965521 2223333344 445555543 4555
Q ss_pred HHHHHHHH-------HHHhhc--------------CChhhHH-H--------HHh--cCCHHHHHHhhcC----------
Q 015851 223 VQRAAAGA-------LRTLAF--------------KNDENKN-Q--------IVE--CNALPTLILMLRS---------- 260 (399)
Q Consensus 223 v~~~a~~~-------L~~L~~--------------~~~~~~~-~--------~~~--~~~~~~L~~ll~~---------- 260 (399)
+....-.. +..+++ ..|..+. . +-+ ...+..|+++|.+
T Consensus 337 l~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s 416 (480)
T 1ho8_A 337 LRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAK 416 (480)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccC
Confidence 54433222 222221 1121111 1 211 1246778888873
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
.++.+..-||.=++.++...|..+..+-+-|+=..+++++.+++++++.+|+.++..+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999889998888888999999999999999999999999988764
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.55 E-value=5.6e-06 Score=68.29 Aligned_cols=151 Identities=20% Similarity=0.190 Sum_probs=119.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (399)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (399)
+.+..+..+|.+.|+.++..++.+|..+....++......-..+++.++.++.++++.+.-.|+.+|..+..+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 45778999999999999999999999999854444444433458999999999999999999999999998664432222
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+. .+...+..++.++++-.+.+|+..++.+--.+ .. .+++..+.+++.|.+.+++.++..++.+++..+.+
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc-ch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 21 24778888899999999999999999983211 11 22466788899999999999999999999997764
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.50 E-value=2.9e-07 Score=79.41 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHh-ccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (399)
Q Consensus 131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~-~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (399)
..|..|+..|..+. ..+...... -...++.|...+. +.+. .++..++.++..|+..-...- .-....+
T Consensus 30 ~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~--------~V~~~a~~~l~~la~~l~~~~-~~~~~~i 99 (242)
T 2qk2_A 30 TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNV--------VLVAMAGKCLALLAKGLAKRF-SNYASAC 99 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCH--------HHHHHHHHHHHHHHHHHGGGG-HHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCH--------HHHHHHHHHHHHHHHHHhhhH-HHHHHHH
Confidence 78889999999887 323211000 0124666777774 5443 889999999999995322111 1122457
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhH-HHH
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNI-KKE 286 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~-~~~ 286 (399)
+|.++..+.+.++.+|..+..+|.++.... .. ..+++.+...+++.++.++..++..|+.+.... +.. ...
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYAST-SL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 899999999999999999999999998732 11 125778888999999999999999999965432 221 111
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
.+ ..+++.+..++.+.++++|..|..+++.++.
T Consensus 173 ~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 173 LL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12 2578999999999999999999999999874
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.44 E-value=1.6e-05 Score=69.79 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=136.5
Q ss_pred HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (399)
Q Consensus 160 ~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 239 (399)
..+++.|.+.+. ..++.++.-|..+.+.+......|...+|+..|+......+...+..++.+|.+|.. +.
T Consensus 121 ~~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v 191 (339)
T 3dad_A 121 NAILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FV 191 (339)
T ss_dssp HHHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cc
Confidence 445566665544 567778888888555677777778899999999999999999999999999999998 56
Q ss_pred hhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC----------CCcHHHHHhhc---CCCh
Q 015851 240 ENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCS 305 (399)
Q Consensus 240 ~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~lL~---~~~~ 305 (399)
++...++ ...++..+..++.+.+..|...|+.+|-.++..++.+...+..+ ..++.++.+|+ +.+.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 6665665 46789999999998889999999999999997765444333221 24889999997 7788
Q ss_pred HHHHHHHHHHHHhhccCh--hhHH----HHHhcCCHHHHHHhhCCC--CHHHHH
Q 015851 306 ESQREAALLLGQFAATDS--DCKV----HIVQRGAVRPLIEMLQSP--DVQLRE 351 (399)
Q Consensus 306 ~v~~~a~~~L~~l~~~~~--~~~~----~l~~~g~v~~L~~ll~~~--~~~v~~ 351 (399)
+++.+|...|..+....+ +.+. .+.+.|+-..+...+... ++++++
T Consensus 272 elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 999998887777665544 2122 234466666777777653 555543
No 79
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.43 E-value=9.9e-05 Score=74.21 Aligned_cols=276 Identities=15% Similarity=0.133 Sum_probs=174.6
Q ss_pred HHHHhhhhhcch-hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851 62 QVNVLNTTFSWL-EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (399)
Q Consensus 62 ~~~~L~~~l~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L 140 (399)
.+..|...+... +.++.++..|+..|+-+..+... . ++..|...|.+.+.... ....+.++..|+..|
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-~------~~~lL~~~L~~~~~~~~----~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-D------TTDYLKNIIVENSGTSG----DEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-H------HHHHHHHHHHHHSSCCS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-H------HHHHHHHHHcCcccccc----ccccHHHHHHHHHHH
Confidence 455566655311 45677888999999988775332 1 36677777765441000 000136788899999
Q ss_pred HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-cCC
Q 015851 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFT 219 (399)
Q Consensus 141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~ 219 (399)
+.........+ +++.|...+.+.+. .+.+.++.+|+.+..+..+. .++..|+..+ .+.
T Consensus 462 Gla~~GS~~ee------v~e~L~~~L~dd~~--------~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~ 520 (963)
T 4ady_A 462 GLAAMGSANIE------VYEALKEVLYNDSA--------TSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQ 520 (963)
T ss_dssp HHHSTTCCCHH------HHHHHHHHHHTCCH--------HHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCS
T ss_pred HHHhcCCCCHH------HHHHHHHHHhcCCH--------HHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccC
Confidence 99763222221 46677777775543 45567777887764332221 1133344433 455
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (399)
+..+++.++.+|+.+..+.++ .++.++..|. +.++-+|..++.+++--..+..+. ..++.|++
T Consensus 521 ~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~ 584 (963)
T 4ady_A 521 HGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLH 584 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHH
Confidence 788999999999999876655 3566666665 578899999998887655443332 13565666
Q ss_pred hhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHh-hCCCCHHHHHHHHHHHHHhhccCCC-CcchhHHHH
Q 015851 299 LLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITV-SVLPAILIF 375 (399)
Q Consensus 299 lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~ 375 (399)
.+. +.+..+|..|+.+|+.+..++++ .++.++.+ +++.++.+|..|..+|+.++...++ .++..+..
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~- 654 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP- 654 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH-
T ss_pred HhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH-
Confidence 654 56678999999999998766542 35556664 4678999999999999999977764 22332222
Q ss_pred HhhccccHHHHHHHHhhhHhh
Q 015851 376 IIINECQLEVLAFVLSEMVLL 396 (399)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~ 396 (399)
+..+....|....+.++..+
T Consensus 655 -L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 655 -LTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp -HHTCSSHHHHHHHHHHHHHH
T ss_pred -HccCCCHHHHHHHHHHHHHH
Confidence 34555566666655555443
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.33 E-value=4.6e-08 Score=75.78 Aligned_cols=122 Identities=19% Similarity=0.171 Sum_probs=88.6
Q ss_pred hCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (399)
Q Consensus 102 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~ 181 (399)
....++.+..+|++++.. +|..|+++|+.+... .++.|+..|++.+. .+
T Consensus 10 ~~~~~~~l~~~L~~~~~~------------vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~--------~v 58 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKW------------VRRDVSTALSRMGDE-----------AFEPLLESLSNEDW--------RI 58 (131)
T ss_dssp -----------CCSSCCC------------SSSSCCSSTTSCSST-----------THHHHHHGGGCSCH--------HH
T ss_pred ccccHHHHHHHhcCCCHH------------HHHHHHHHHHHhCch-----------HHHHHHHHHcCCCH--------HH
Confidence 345678889999988774 445788888776532 26888899986554 89
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (399)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~ 261 (399)
+..++++|+++.. ...++.|+.++.++++.++..|+++|+++.. + ..++.|+.+++++
T Consensus 59 R~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~ 116 (131)
T 1te4_A 59 RGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETG 116 (131)
T ss_dssp HHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCC
Confidence 9999999988762 1237889999999999999999999999863 2 3578899999999
Q ss_pred CHHHHHHHHHHHHHh
Q 015851 262 DSAIHYEAVGVIGNL 276 (399)
Q Consensus 262 ~~~v~~~a~~~L~~l 276 (399)
++.++..|+++|+.|
T Consensus 117 ~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 117 TGFARKVAVNYLETH 131 (131)
T ss_dssp CTHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999998754
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.1e-06 Score=76.01 Aligned_cols=183 Identities=10% Similarity=0.141 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHHHHHH-HcCC-hhHHHHHHh-CCChHHHHhcc-cCCCCcccccCCCcchHHHHHHHHHHHHHhcC--C-
Q 015851 74 EADRAAAKRATHVLAE-LAKN-EEVVNWIVE-GGAVPALVKHL-QAPPTSEADRNLKPFEHEVEKGSAFALGLLAV--K- 146 (399)
Q Consensus 74 ~~~~~~~~~a~~~L~~-l~~~-~~~~~~~~~-~g~l~~L~~lL-~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~--~- 146 (399)
+.+...|..|+..|.. +..+ +.......+ ..++..|...+ .+.+. .++..|+.+|+.++. .
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~------------~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI------------QAVALAAQSVELICDKLKT 94 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH------------HHHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH------------HHHHHHHHHHHHHHHhccc
Confidence 3466778899999999 8643 322100001 13466777788 55555 788899999999992 2
Q ss_pred hhhH-HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 015851 147 PEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR 225 (399)
Q Consensus 147 ~~~~-~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 225 (399)
+... ..... .++.++..+++... .++..+..++..++...+.......-...++.|...|.+.++.++.
T Consensus 95 ~~f~~~y~~~--llp~ll~~l~dkk~--------~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~ 164 (249)
T 2qk1_A 95 PGFSKDYVSL--VFTPLLDRTKEKKP--------SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRM 164 (249)
T ss_dssp TTSCHHHHHH--HHHHHHHGGGCCCH--------HHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred ccccHHHHHH--HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHH
Confidence 3333 33222 67888888876655 7888888888888864321110000123567788899999999999
Q ss_pred HHHHHHHHhhcCChh---hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851 226 AAAGALRTLAFKNDE---NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 226 ~a~~~L~~L~~~~~~---~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (399)
.++.+|..+....+. .....+...++|.+.+++.+.++++|..|..+++.++.
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999974432 12223325689999999999999999999999999873
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.31 E-value=2.6e-05 Score=70.30 Aligned_cols=219 Identities=14% Similarity=0.070 Sum_probs=104.6
Q ss_pred HHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHH
Q 015851 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (399)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~ 186 (399)
..+++++.+.+. .+|+-.--.+.+++..++- .+ =++..+.+=+++.++ -++-.|+
T Consensus 71 ~~v~kl~~s~d~------------~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~--------~iR~lAL 125 (355)
T 3tjz_B 71 FAMTKLFQSNDP------------TLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKED--------SYRGPAV 125 (355)
T ss_dssp HHHHGGGGCCCH------------HHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCH--------HHHHHHH
T ss_pred HHHHHHhcCCCH------------HHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcH--------hHHHHHH
Confidence 344556665554 5555555555555533211 11 123344444444333 5555666
Q ss_pred HHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHH
Q 015851 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (399)
Q Consensus 187 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 266 (399)
++|+++.. .+- - ....+.+...+.+.++.|+..|+-+...|....++.. + ++++.+-.++.+.++.+.
T Consensus 126 RtL~~I~~-~~m-~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~ 193 (355)
T 3tjz_B 126 RALCQITD-STM-L-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQ 193 (355)
T ss_dssp HHHHHHCC-TTT-H-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHH
T ss_pred HHHhcCCC-HHH-H-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHH
Confidence 66666652 111 1 1123445556666666666666666666665444422 1 355666666666666666
Q ss_pred HHHHHHHHHhhcCChhHHHHH--------------------------------HHCCCcHHHHHhhcCCChHHHHHHHHH
Q 015851 267 YEAVGVIGNLVHSSPNIKKEV--------------------------------LAAGALQPVIGLLSSCCSESQREAALL 314 (399)
Q Consensus 267 ~~a~~~L~~l~~~~~~~~~~~--------------------------------~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (399)
.+|+.+|..+...+......+ .....++.+..+|++.++.|.-+|+.+
T Consensus 194 ~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 194 YHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 666666666654322110000 112345556666667777788888888
Q ss_pred HHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 315 L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
|..+...... .. ..++..|..++.++++.+|-.|...|..++...|..
T Consensus 274 I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 274 IVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp HTC----------------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred HHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence 8777532111 11 233556666777778888888888888888776653
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.17 E-value=1.3e-05 Score=72.30 Aligned_cols=230 Identities=11% Similarity=0.032 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHH
Q 015851 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i 153 (399)
.++.+|-.|+++|+++...+-. .. +.+.+.+.|.+.++ .+|..|+.+..++. ..|+..+
T Consensus 116 ~N~~iR~lALRtL~~I~~~~m~-~~-----l~~~lk~~L~d~~p------------yVRk~A~l~~~kL~~~~pe~v~-- 175 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDSTML-QA-----IERYMKQAIVDKVP------------SVSSSALVSSLHLLKCSFDVVK-- 175 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTH-HH-----HHHHHHHHHTCSSH------------HHHHHHHHHHHHHTTTCHHHHH--
T ss_pred CcHhHHHHHHHHHhcCCCHHHH-HH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHHHhccCHHHHH--
Confidence 4455566666666665442211 11 23344455555444 55556666666665 4444322
Q ss_pred HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC---CHHHHHHHHHH
Q 015851 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT---DTKVQRAAAGA 230 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~ 230 (399)
+++..+-+++.+.+. -++..++.+|..+...+.. .+..++..+... ++-.+...++.
T Consensus 176 ---~~~~~l~~ll~d~n~--------~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~ 235 (355)
T 3tjz_B 176 ---RWVNEAQEAASSDNI--------MVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRV 235 (355)
T ss_dssp ---TTHHHHHHHTTCSSH--------HHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCc--------cHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHH
Confidence 355555555554443 4555555556555543321 111122222221 23333333333
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHH
Q 015851 231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (399)
Q Consensus 231 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 310 (399)
+..+...++ .-.....++.+..+|++.++.|..+|+.++..+...... . -..++..+..++.++++.++-.
T Consensus 236 l~~~~~~d~----~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~-~~~a~~~L~~fLss~d~niryv 306 (355)
T 3tjz_B 236 ASRQLEDED----GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----E-LAPAVSVLQLFCSSPKAALRYA 306 (355)
T ss_dssp HTCC---------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHH
T ss_pred HHHhccccc----hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----H-HHHHHHHHHHHHcCCCchHHHH
Confidence 333332110 001234556677777788899999999999988542111 1 1345677778888888899999
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (399)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~ 358 (399)
|+..|..+....|..... +-..+.+++.+++..+...|..+|.
T Consensus 307 aLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 307 AVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp HHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHhh
Confidence 999998888655533221 3446778888888888777766554
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.16 E-value=4.9e-05 Score=66.78 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=125.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH-
Q 015851 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL- 288 (399)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 288 (399)
..+++.|.+.+.+.++.++.-|..+...+.+...+++..+++..|+++....+...+..++.++.++..+ ......++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchhC
Confidence 3456677788888899999999995555789999999999999999999999999999999999999864 44554555
Q ss_pred HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhc----------CCHHHHHHhhC---CCCHHHHHHHHH
Q 015851 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR----------GAVRPLIEMLQ---SPDVQLREMSAF 355 (399)
Q Consensus 289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~----------g~v~~L~~ll~---~~~~~v~~~a~~ 355 (399)
...++..+..++.+....+.+.|+..|..++..++.+...+.+. .-++.|+.+|+ +.+.+++..|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 44578899999998888999999999999988766554444331 13678999997 689999999998
Q ss_pred HHHHhhccCCC
Q 015851 356 ALGRLAQVITV 366 (399)
Q Consensus 356 ~L~~l~~~~~~ 366 (399)
.|-.+-...+.
T Consensus 280 LIN~lL~~apd 290 (339)
T 3dad_A 280 LINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHhcCCC
Confidence 88877776664
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.11 E-value=0.0021 Score=65.47 Aligned_cols=259 Identities=19% Similarity=0.193 Sum_probs=177.7
Q ss_pred hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC----hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a 136 (399)
.+++.|.+.+..+.+. +.|+..+..++.. +..-..++ +.++.++..+.+... .+|..|
T Consensus 54 ~~~~~~~~~~~~k~~~----~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~------------~v~~aa 115 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA----ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK------------EIQSVA 115 (986)
T ss_dssp HHHHHHHHHHTSHHHH----HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH------------HHHHHH
T ss_pred hHHHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch------------HHHHHH
Confidence 4566666655433222 6899999999853 12212222 678888888877665 688888
Q ss_pred HHHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851 137 AFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (399)
Q Consensus 137 ~~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (399)
..+...+. .+|.... ..+|.|+..|..... |.....++.++..|+...+ .+....-...+|.+.+
T Consensus 116 ~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~ 182 (986)
T 2iw3_A 116 SETLISIVNAVNPVAIK-----ALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSE 182 (986)
T ss_dssp HHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHh
Confidence 88888877 4554432 258999999976543 3788889999999996553 2222334578999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhc--CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--hhHHHHHHHC
Q 015851 215 LLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS--PNIKKEVLAA 290 (399)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~ 290 (399)
.+.+..+++...|..++-.++. +|.+. ...+|.|++.+.+++. ...+...|+..+.-. +.-.-.+
T Consensus 183 ~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~--- 251 (986)
T 2iw3_A 183 TMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI--- 251 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH---
T ss_pred hcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH---
Confidence 9999999999999999988886 22222 2479999999998744 444555555544321 1221222
Q ss_pred CCcHHHHHhhcCCChHHHHHHHHHHHHhhcc--ChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhcc
Q 015851 291 GALQPVIGLLSSCCSESQREAALLLGQFAAT--DSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 363 (399)
.+|.|.+-|......+++.++.++.|||.- +|.....++ ..++|-|.+... -.+|++|+.|..++..|-+.
T Consensus 252 -~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 252 -MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp -HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 367777888888889999999999999964 333333333 346777777664 47999999999888888543
No 86
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.95 E-value=0.0022 Score=53.80 Aligned_cols=206 Identities=12% Similarity=0.112 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchH-HHHHHHHHHHHHhcCChhhHHHH
Q 015851 77 RAAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEH-EVEKGSAFALGLLAVKPEHQQLI 153 (399)
Q Consensus 77 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~-~~~~~a~~~L~~l~~~~~~~~~i 153 (399)
++.|+.|+..|+.--.. ++....+... |.+..|++=+-+..+..... ..+... .-..+|...|..+|.+|+.|..+
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp-~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPP-TLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTB-CCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCc-ccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 34578888888876654 6655566655 66666654222211111000 000111 22356777778888999999999
Q ss_pred HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (399)
Q Consensus 154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (399)
.++.+.-.|.-+|+..+.....+ -++-.++++++.+.. +++++-..+...+.+|.+++.++.+++-.+..|...+.
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE---~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlq 170 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFE---YLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQ 170 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHH---HHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcch---hhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 99998888888888776554332 678889999999996 44556666778899999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhc--------CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 233 TLAFKNDENKNQIVEC--------NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 233 ~L~~~~~~~~~~~~~~--------~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
.+.. ++.+-..++.. .++..++ .+.+++++.+.++.+++-..++.+ +..+..+.
T Consensus 171 KIL~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL~ 233 (268)
T 2fv2_A 171 KILL-DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREALR 233 (268)
T ss_dssp HHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHhc-cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 9997 56666655541 1222222 334567889999999999999853 55555443
No 87
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.59 E-value=0.0012 Score=55.47 Aligned_cols=177 Identities=13% Similarity=0.174 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhcC
Q 015851 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (399)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~~ 157 (399)
...|+..|-.+++||+.|..|.+..+.-.|..+|+..+.. .+|+ -+|..++.+++.+. ++++....+.+.+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~------r~fE-~LRLtsLGVIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKT------RPFE-YLRLTSLGVIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCS------HHHH-HHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCC------Ccch-hhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence 4577777888899999999999999999999999876542 2222 78999999999999 7788888889999
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH------HHHh-cCChHH-HHHhhcCCCHHHHHHHHH
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRM-EGGIPP-LVELLEFTDTKVQRAAAG 229 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i~~-L~~ll~~~~~~v~~~a~~ 229 (399)
++|..++.++.+++ --+..|..++..+..++..... .+.. ..++.. +..+.+++++.+..+..+
T Consensus 146 iiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiir 217 (268)
T 2fv2_A 146 IIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVR 217 (268)
T ss_dssp HHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99999999998876 4445566666666644432221 1111 122322 334456788999999999
Q ss_pred HHHHhhcCChhhHHHHHhc-------CCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851 230 ALRTLAFKNDENKNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNL 276 (399)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~v~~~a~~~L~~l 276 (399)
+-..|+. ++..++.+... |.+. .++ .+|+.++.+-...+.|+
T Consensus 218 cYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 218 CYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 9999998 78777766542 2222 222 35778887777777766
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.59 E-value=0.0029 Score=64.40 Aligned_cols=259 Identities=13% Similarity=0.131 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCC----hhhHHHHHh
Q 015851 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK----PEHQQLIVD 155 (399)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~i~~ 155 (399)
+..|...+.++..+.... .....+++..+...+.+... . +.|+.++..++.. +..-..++
T Consensus 31 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~------------~--~~a~~~~~~~~~~~~~~~~~e~~~~- 94 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKT------------A--ANAMQAVAHIANQSNLSPSVEPYIV- 94 (986)
T ss_dssp HHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHH------------H--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred HHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCC------------H--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence 346666777765431100 01112566777777765322 1 5889999999822 22323333
Q ss_pred cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 015851 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTL 234 (399)
Q Consensus 156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L 234 (399)
+.++.++....+... .++..+-.++..+...-+.... ..++|.|+..|.+. .+..+..|+.++..|
T Consensus 95 -~~~~~~~~~~~dk~~--------~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 95 -QLVPAICTNAGNKDK--------EIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp -TTHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 467777777765554 6777777777777753332111 34588899988765 589999999999999
Q ss_pred hcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHH
Q 015851 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (399)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 314 (399)
+...++.... .-..++|.+...+.+..++|...|..++..+|..-.+ .. -..++|.|++.+..++. ..++...
T Consensus 162 ~~~~~~~~~~-~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n-~d---~~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 162 VDAAKDQVAL-RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN-KD---IERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHHSHHHHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC-TT---TGGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHHhHHHHHH-hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC-cc---hhhhHHHHHHHhcChhh--hHHHHHH
Confidence 9744332222 2245899999999999999999999999999853211 11 13578999999988743 4455555
Q ss_pred HHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-----cchhHHHHH
Q 015851 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-----VLPAILIFI 376 (399)
Q Consensus 315 L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~ 376 (399)
|+.-+-........+.- ++|.|.+-|......+.+.++-++.|+|+--++- ++|+++--+
T Consensus 235 l~~~tfv~~v~~~~l~~--~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 235 LGATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGL 299 (986)
T ss_dssp HTTCCCCSCCCHHHHHH--HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHH
T ss_pred hhcCeeEeeecchhHHH--HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHH
Confidence 55544333333333332 3788888888889999999999999999866542 566655444
No 89
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.43 E-value=0.00041 Score=59.14 Aligned_cols=14 Identities=7% Similarity=-0.149 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHH
Q 015851 73 LEADRAAAKRATHV 86 (399)
Q Consensus 73 ~~~~~~~~~~a~~~ 86 (399)
.++++.+|..++..
T Consensus 60 ~d~~~~VR~~AA~~ 73 (244)
T 1lrv_A 60 ADPFWERRAIAVRY 73 (244)
T ss_dssp TCSSHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHh
Confidence 45567777777763
No 90
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.33 E-value=0.0032 Score=65.30 Aligned_cols=276 Identities=13% Similarity=0.081 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015851 78 AAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN 156 (399)
Q Consensus 78 ~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 156 (399)
.++..++.+|..+.. .++..... -..+++..++++.+.... .....++..++..+..++..+..+..+...
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~-------~~~~~~~~~al~fl~~~~~~~~~~~~~~~~ 332 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQ-------PKYDILVSKSLSFLTAVTRIPKYFEIFNNE 332 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSC-------TTSHHHHHHHHHHHHHHHTSHHHHGGGCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC-------cCcHHHHHHHHHHHHHHhCcHhHHHHHcCc
Confidence 467788888888775 33322211 123455556665432110 112378889999999888655544332111
Q ss_pred CcHHHHH-----HHHhcc-ccCc----c----------ccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 015851 157 GALSHLV-----NLLKRH-MDSN----C----------SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (399)
Q Consensus 157 ~~i~~L~-----~~L~~~-~~~~----~----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (399)
+.++.++ ..+.-. ++.. + .......+..+..+|..++...+. .+. ..+++.+...+
T Consensus 333 ~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l 408 (960)
T 1wa5_C 333 SAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFV 408 (960)
T ss_dssp HHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHH
Confidence 2334333 233210 0100 0 011124667778888888864431 111 12334444445
Q ss_pred c------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-----CCHHH----HHHhhcCC---CHHHHHHHHHHHHHhhc
Q 015851 217 E------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-----NALPT----LILMLRSE---DSAIHYEAVGVIGNLVH 278 (399)
Q Consensus 217 ~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-----~~~~~----L~~ll~~~---~~~v~~~a~~~L~~l~~ 278 (399)
. ++++..+..|+.+++.++.+.... ...... ...+. ++..+.++ ++-+|..|+|+++.++.
T Consensus 409 ~~~~~~~~~~w~~reaal~algaia~~~~~~-~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~ 487 (960)
T 1wa5_C 409 DQYMSDPSKNWKFKDLYIYLFTALAINGNIT-NAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRN 487 (960)
T ss_dssp HHHHC----CHHHHHHHHHHHHHHHBSSCCB-TTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHHHhccc-cCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHh
Confidence 4 567889999999999998631100 000000 12222 23334555 88999999999999985
Q ss_pred CChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-------h-hHHHHHh--cCCHHHHHHhhCCCC--
Q 015851 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-------D-CKVHIVQ--RGAVRPLIEMLQSPD-- 346 (399)
Q Consensus 279 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------~-~~~~l~~--~g~v~~L~~ll~~~~-- 346 (399)
.-+. . .-..+++.++..|.++++.++..|+++|.+++.... + .+..+.. ..+++.|..++....
T Consensus 488 ~~~~--~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~ 563 (960)
T 1wa5_C 488 QLTK--A--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSS 563 (960)
T ss_dssp GSCH--H--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCC
T ss_pred hCCH--H--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCC
Confidence 4221 1 123457788888888889999999999999986311 1 1222211 234566666665531
Q ss_pred -HH--HHHHHHHHHHHhhccCCCCcch
Q 015851 347 -VQ--LREMSAFALGRLAQVITVSVLP 370 (399)
Q Consensus 347 -~~--v~~~a~~~L~~l~~~~~~~~~~ 370 (399)
.. ....+..+|..++....+.+.|
T Consensus 564 ~~~~~~~e~l~~al~~vv~~~~~~~~p 590 (960)
T 1wa5_C 564 PEKLAENEFLMRSIFRVLQTSEDSIQP 590 (960)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTTGG
T ss_pred CCcccccHHHHHHHHHHHHHHHHhhhh
Confidence 11 2345667777766655554443
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.32 E-value=0.0066 Score=52.08 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=101.9
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCh----hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851 216 LEFTDTKVQRAAAGALRTLAFKND----ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~----~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 291 (399)
+.+.++.+...++.+|..+...-. .....-. .-++|.|+.-+.+..+.+|..+-.++..+..-.+.. .
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~ 167 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------K 167 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------H
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------H
Confidence 346788888888888877753110 1111111 236899999998889999998888887775321211 1
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCH---HHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV---RPLIEMLQSPDVQLREMSAFALGRLAQVITVSV 368 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v---~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (399)
+++.++.-+.+.+...+.+++..+..+... .+.. ....+ +.+.+++.+.|..||.+|..++..+-...++++
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~--~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITN--AGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--HCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHh--cCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 466778888899999999999988888643 1211 24468 999999999999999999999999998887753
Q ss_pred c
Q 015851 369 L 369 (399)
Q Consensus 369 ~ 369 (399)
.
T Consensus 243 ~ 243 (266)
T 2of3_A 243 W 243 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 92
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.26 E-value=0.031 Score=57.93 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHhc-CChh-hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851 130 HEVEKGSAFALGLLA-VKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~-~~~~-~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (399)
..++.+++.+|..+. ..++ ....+. ..++..++.+......... ..+...++..+..++. .+..+..+....
T Consensus 260 ~~vk~~~~~~l~~l~~~~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~---~~~~~~al~fl~~~~~-~~~~~~~~~~~~ 333 (960)
T 1wa5_C 260 IKVKSSIQELVQLYTTRYEDVFGPMIN--EFIQITWNLLTSISNQPKY---DILVSKSLSFLTAVTR-IPKYFEIFNNES 333 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHCCSCTTS---HHHHHHHHHHHHHHHT-SHHHHGGGCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCcCc---HHHHHHHHHHHHHHhC-cHhHHHHHcCch
Confidence 357788888888887 4433 222211 2455566666532111111 1777888888888774 222221111011
Q ss_pred ChHH-----HHHhhc----C-----CC--------------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 208 GIPP-----LVELLE----F-----TD--------------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 208 ~i~~-----L~~ll~----~-----~~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
.++. ++..+. + ++ ...|..|..+|..++...+ ..+... +++.+...+.
T Consensus 334 ~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~~-~l~~i~~~l~ 409 (960)
T 1wa5_C 334 AMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTNI-FLAHMKGFVD 409 (960)
T ss_dssp HHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHHH-HHHHHHHHHH
Confidence 2222 222221 0 11 2467788888888886433 222221 3344444454
Q ss_pred ------CCCHHHHHHHHHHHHHhhcCChh------------HHHHHHHCCCcHHHHHhhcCC---ChHHHHHHHHHHHHh
Q 015851 260 ------SEDSAIHYEAVGVIGNLVHSSPN------------IKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQF 318 (399)
Q Consensus 260 ------~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l 318 (399)
+++...+..|+.+++.++.+... ....++ ...++..|.++ ++.+|..|+|+|+.+
T Consensus 410 ~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~ 485 (960)
T 1wa5_C 410 QYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTF 485 (960)
T ss_dssp HHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHT
T ss_pred HhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHH
Confidence 45567889999999999753110 111111 12233445555 789999999999999
Q ss_pred hccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 319 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
+..- .... -..+++.+++.+.++++.|+..|+.+|.++++.
T Consensus 486 ~~~~--~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 486 RNQL--TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp GGGS--CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HhhC--CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 8642 1222 223577888888888899999999999999974
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.015 Score=50.64 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHhhcCchhH--HHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-----hHHHHHhcC
Q 015851 179 NSVIRRAADAITNLAHENSSIK--TRVR--MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----NKNQIVECN 249 (399)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~~--~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-----~~~~~~~~~ 249 (399)
|..+..++..|..+....+... .... -....+.+-..+.+.|..++..++.++..++..... ......-..
T Consensus 23 WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (278)
T 4ffb_C 23 WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIST 102 (278)
T ss_dssp HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH
Confidence 4788888888877775433211 1111 113456667788899999999999999988753211 111112234
Q ss_pred CHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc-Chh--h
Q 015851 250 ALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSD--C 325 (399)
Q Consensus 250 ~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~--~ 325 (399)
++|.|+. .+.+..+.++..+..++..++...... .. +++.+...+.+.++.++.+++..|..+... +.. .
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~ 176 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN 176 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 6777774 577888999999998888776432111 11 256677788899999999999888887642 111 1
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 326 ~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
....+ ..+++.+..++.+.++.||..|..++..+...-++
T Consensus 177 ~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 177 VQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred chhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 11111 12456788889999999999999999999876553
No 94
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.23 E-value=0.048 Score=47.91 Aligned_cols=204 Identities=13% Similarity=0.094 Sum_probs=148.2
Q ss_pred HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH----HHHHh-cCChHHHHHhhcCCCHHHHH
Q 015851 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK----TRVRM-EGGIPPLVELLEFTDTKVQR 225 (399)
Q Consensus 151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~ll~~~~~~v~~ 225 (399)
+.+...+.+..|+..|..-+- +.+..+..+..++.......+ ..+.. ...+..|+.-- +++++.-
T Consensus 72 ~ei~~~dll~~Li~~l~~L~f--------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl 141 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDF--------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIAL 141 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCH--------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHH
T ss_pred HHHHHhCHHHHHHHhcccCCc--------hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHh
Confidence 345566788888888887765 888889999999886543322 12221 12222233222 2355555
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC---CcHHHHHhhcC
Q 015851 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSS 302 (399)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~ 302 (399)
.+-..|+.... ++.....+...+.+-.+...++.++-++...|..++..+-..........+..+ ++...-.+|.+
T Consensus 142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 66666777776 678888888877788888899999999999999999988765555555555543 56777788999
Q ss_pred CChHHHHHHHHHHHHhhccChhhH----HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 303 CCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 303 ~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++.-++..++..|+.+... ..+. +.+.+..-+..+..+|++++..++-.|-.+...+..++..
T Consensus 221 ~NYVTkRQSlKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 221 ENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred CcchhHHHHHHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 9999999999999999853 4332 3333456688999999999999999999999999876554
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.19 E-value=0.044 Score=56.75 Aligned_cols=221 Identities=13% Similarity=0.103 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (399)
+..++.++++++.++...... ....++.++..+..-..+. ..++..++++++.++..-..... .-..++
T Consensus 463 w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~-----~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl 531 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISN-----VQLADTVMFTIGALSEWLADHPV--MINSVL 531 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCS-----HHHHHHHHHHHHHTHHHHHHCHH--HHTTTH
T ss_pred hHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCc-----HHHHHHHHHHHHHHHHHHHhCHH--HHHHHH
Confidence 467889999999999432210 1234555665553322111 17889999999999853221111 235788
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hHH
Q 015851 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIK 284 (399)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~ 284 (399)
+.++..|.+ +.++..|+.+|.+++..... .+.. ..++..+..++.. -+...+..+..+++.++...+ +..
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRECKY---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHTGG---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 888888865 88999999999999963222 1211 1234444555554 256888889999999875433 222
Q ss_pred HHHHHCCCcHHHHHhhc----C-CChHHHHH---HHHHHHHhhcc-C---h------------------hhHHHHHhcCC
Q 015851 285 KEVLAAGALQPVIGLLS----S-CCSESQRE---AALLLGQFAAT-D---S------------------DCKVHIVQRGA 334 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~----~-~~~~v~~~---a~~~L~~l~~~-~---~------------------~~~~~l~~~g~ 334 (399)
... -..+++.+...+. . .+++.+.. ...+|+.+... . + ..... ....+
T Consensus 607 ~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 684 (963)
T 2x19_B 607 LKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQV 684 (963)
T ss_dssp HHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHH
Confidence 222 2334444444432 2 24444443 33344333321 0 0 00111 22335
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhhccCCCCc
Q 015851 335 VRPLIEMLQ--SPDVQLREMSAFALGRLAQVITVSV 368 (399)
Q Consensus 335 v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (399)
++.+..++. ..+..+.+.++.++..++...+..+
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~ 720 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF 720 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc
Confidence 666666663 3578899999999999887666543
No 96
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.08 E-value=0.026 Score=58.48 Aligned_cols=221 Identities=10% Similarity=0.048 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (399)
.-++.++.+++.++....... ...++.++.++..-.... ....++..++++++.++..-..... .-..+++
T Consensus 479 ~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d---~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl~ 549 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEK---LNVKLLGTALETMGSYCNWLMENPA--YIPPAIN 549 (971)
T ss_dssp HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTT---SCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccc---cCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHH
Confidence 678899999999984432211 234555555543222100 0017899999999999853221111 1123456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hHHHHH
Q 015851 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKKEV 287 (399)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 287 (399)
.++..| + +.++..|++++.+++........... ..++..+..++.. -+...+..+..+++.++...+ ......
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 677667 3 77999999999999964332221122 2355666677776 357888889999999875322 222221
Q ss_pred HHCCCcHHHHHh----hcCC--ChHHHHHHHHHHHHhhcc----Ch------------hhHHHHHhcCCHHHHHHhhC--
Q 015851 288 LAAGALQPVIGL----LSSC--CSESQREAALLLGQFAAT----DS------------DCKVHIVQRGAVRPLIEMLQ-- 343 (399)
Q Consensus 288 ~~~~~l~~L~~l----L~~~--~~~v~~~a~~~L~~l~~~----~~------------~~~~~l~~~g~v~~L~~ll~-- 343 (399)
+ ...+++++.. ++.. +.+.+.....++..++.. .+ +.... ....+++.+..++.
T Consensus 626 ~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 626 L-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMW 703 (971)
T ss_dssp H-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhc
Confidence 1 2234444433 3332 333334444444443311 00 00011 12456777777774
Q ss_pred CCCHHHHHHHHHHHHHhhccCCC
Q 015851 344 SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
..+..+.+.++.+++.++..-..
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~~~~ 726 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITNLRS 726 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHhhhh
Confidence 24789999999999998765443
No 97
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.05 E-value=0.083 Score=46.43 Aligned_cols=242 Identities=13% Similarity=0.150 Sum_probs=162.8
Q ss_pred HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChh----hHHHHHhcCcHHHHHHHHhccccC
Q 015851 98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE----HQQLIVDNGALSHLVNLLKRHMDS 172 (399)
Q Consensus 98 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~----~~~~i~~~~~i~~L~~~L~~~~~~ 172 (399)
..+...+.+..|+..|..-+- +.|..+..++.++. .... ..+.+.. - +.++..|-.+.+.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~f------------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~ 136 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDF------------EGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYES 136 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCH------------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGS
T ss_pred HHHHHhCHHHHHHHhcccCCc------------hhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhcc
Confidence 455667888888888876544 88889999999988 3332 2334443 1 4444444444433
Q ss_pred ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc---C
Q 015851 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---N 249 (399)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~ 249 (399)
. ++...+-..|..+. ..+.....+...+.+-.+.+.+..++-++...|..++..|...+......++.. .
T Consensus 137 ~------diAl~~G~mLReci-r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~ 209 (341)
T 1upk_A 137 P------EIALNCGIMLRECI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDR 209 (341)
T ss_dssp T------TTHHHHHHHHHHHH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHH
T ss_pred c------hhHhHHHHHHHHHH-HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHH
Confidence 2 45555556666666 455555556677778888899999999999999999999988777777777663 3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH----HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC---
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV----LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD--- 322 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--- 322 (399)
++..+-++|.+++--++..++..|+.+... ..+...+ -+..-+..++.+|++.+..++-+|..+.--+.+..
T Consensus 210 Ff~~y~~Ll~S~NYVTkRQSlKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~ 288 (341)
T 1upk_A 210 FFSEYEKLLHSENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT 288 (341)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC
Confidence 577788899999999999999999999854 3332222 23356888999999999999999998888777642
Q ss_pred hhhHHHHHh--cCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 015851 323 SDCKVHIVQ--RGAVRPLIEMLQS--PDVQLREMSAFALGRLAQ 362 (399)
Q Consensus 323 ~~~~~~l~~--~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 362 (399)
+.....+.. ..++..|-++..+ .|..-...=...+..|..
T Consensus 289 ~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~ 332 (341)
T 1upk_A 289 QPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD 332 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHh
Confidence 233344443 2333444444433 345555554444444443
No 98
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.94 E-value=0.032 Score=57.82 Aligned_cols=260 Identities=8% Similarity=0.010 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHHHHHcCChh--HHHHHHhCCChHHHHhcc-------cCCCCcccccCCCcchHHHHHHHHHHHHHhc-
Q 015851 75 ADRAAAKRATHVLAELAKNEE--VVNWIVEGGAVPALVKHL-------QAPPTSEADRNLKPFEHEVEKGSAFALGLLA- 144 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~l~~L~~lL-------~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~- 144 (399)
.++..+..|+.+|..+...+. .+...+. ..++.++.+. .+.+.. ..+.....++.+..++
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~---------~~~~~~~l~~l~~~~~~ 325 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKREND---------NEDIIVHIYMLFVSSVE 325 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCS---------CSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhccccc---------chHHHHHHHHHHHHHHH
Confidence 466789999999999987422 1111111 1233333321 221210 0145556677776666
Q ss_pred CChhh-H-----------HHHHhcCcHHHHHHHHhc----cccCccccccHHHHHHHHHHHHHHhhc---------Cchh
Q 015851 145 VKPEH-Q-----------QLIVDNGALSHLVNLLKR----HMDSNCSRAVNSVIRRAADAITNLAHE---------NSSI 199 (399)
Q Consensus 145 ~~~~~-~-----------~~i~~~~~i~~L~~~L~~----~~~~~~~~~~~~~~~~a~~~L~~l~~~---------~~~~ 199 (399)
..+.. . ..+. ..++.++.+... ..++ ++...+++.+..++.. .+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~-------~v~~~~l~fw~~l~~~~~~~~~~~~~~~~ 396 (971)
T 2x1g_F 326 RHSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEE-------SCSTMALAFWYMLQDEVFAMSNDEQKHKC 396 (971)
T ss_dssp HTHHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTC-------TTHHHHHHHHHHHHHHHHC-------CHH
T ss_pred HHHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcch-------hhhHHHHHHHHHHHHHHHhcccccchHHH
Confidence 22221 1 1111 244555554433 1121 6778888888777641 1111
Q ss_pred HHHHH--hcCChHHHHHhhcCC--------C-------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--
Q 015851 200 KTRVR--MEGGIPPLVELLEFT--------D-------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-- 260 (399)
Q Consensus 200 ~~~~~--~~~~i~~L~~ll~~~--------~-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-- 260 (399)
...+. -...++.++..+..+ + ...|..+..+|..++...++ .+... +++.+-..+..
T Consensus 397 ~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~~-~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 397 WEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND---YILEI-LAAMLDEAIADLQ 472 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT---HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHH-HHHHHHHHHHhcc
Confidence 11111 113445555555322 1 13566677777777653221 11111 12222233322
Q ss_pred ---CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh---c--CCChHHHHHHHHHHHHhhccChhhHHHHHhc
Q 015851 261 ---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL---S--SCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (399)
Q Consensus 261 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (399)
.+...++.++.+++.++.+..... ...++.++.++ . ..++.++..++++++.++..-....+.+ .
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~ 545 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--P 545 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--H
T ss_pred CCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 455789999999999986533221 12344444433 3 2478999999999999885311211111 1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 333 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.+++.|+..+ + +.++..|+.++.++++.....
T Consensus 546 ~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 546 PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence 2456666666 2 779999999999999876543
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.85 E-value=0.092 Score=54.31 Aligned_cols=102 Identities=10% Similarity=0.079 Sum_probs=70.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh---cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 015851 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL---SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (399)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v 335 (399)
.+.+...++.++++++.++.+..... ...++.++..+ ..+++.++..++++++.++..-.... .+. ..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 45577889999999999986533211 12344444443 33577899999999999985322222 222 3578
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851 336 RPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL 369 (399)
Q Consensus 336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (399)
+.++..+++ +.|+..|+.++.++++.....+.
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~ 563 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLP 563 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 888888854 88999999999999987665433
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.71 E-value=0.084 Score=54.58 Aligned_cols=280 Identities=12% Similarity=0.096 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc---CChhhHH
Q 015851 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQ 151 (399)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~ 151 (399)
.++.++..++.+|......-.. ..++..+.++.+.++|.+ + +++..|+.+|..+. .+++.+.
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~--~------------~~r~~A~ecL~ei~~k~~~~~~k~ 269 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQI--E------------ELRCAACETMTEIVNKKMKPLEKL 269 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTS--H------------HHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCC--h------------HHHHHHHHHHHHHHHcCCChhhHH
Confidence 4567888999999998884221 344566788888888874 2 78999999999988 3344444
Q ss_pred HHHhcCcHHHHHHHHhc-cccCccccccHHHHHHHHHHHHHHhh------cCc-----hhHHH--HHhcCChHHHHHhhc
Q 015851 152 LIVDNGALSHLVNLLKR-HMDSNCSRAVNSVIRRAADAITNLAH------ENS-----SIKTR--VRMEGGIPPLVELLE 217 (399)
Q Consensus 152 ~i~~~~~i~~L~~~L~~-~~~~~~~~~~~~~~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~i~~L~~ll~ 217 (399)
.++..=.+...+..+.. ..+. ++.+..+..+..++. ..+ ..+.. -.-.+.++.++.++.
T Consensus 270 ~li~~l~L~~~~~~l~~~~~D~-------d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~ 342 (980)
T 3ibv_A 270 NLLNILNLNLFFSKSQEQSTDP-------NFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLS 342 (980)
T ss_dssp HHHHHHHHHHHHCC-----CCH-------HHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHhcccccH-------HHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhC
Confidence 33332111222222221 1111 555444444433321 121 11111 112367899999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCh---------hhHHHHHhcCCHHHHHHhhcCC------C----------HHHHHHHHHH
Q 015851 218 FTDTKVQRAAAGALRTLAFKND---------ENKNQIVECNALPTLILMLRSE------D----------SAIHYEAVGV 272 (399)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~---------~~~~~~~~~~~~~~L~~ll~~~------~----------~~v~~~a~~~ 272 (399)
+++.++...++..+..+..... .....+.. ..++.++.-+..+ + .+.|......
T Consensus 343 ~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l 421 (980)
T 3ibv_A 343 DDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIF 421 (980)
T ss_dssp CSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHH
Confidence 9988888777777666553110 11111111 1344444444321 1 1455555533
Q ss_pred HHHhhcCChhHHHHHHHCCCcHHHHHhhc---CCChHHHHHHHHHHHHhhccChhhHHHHH-h----cCCHHHHHHhhC-
Q 015851 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHIV-Q----RGAVRPLIEMLQ- 343 (399)
Q Consensus 273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~----~g~v~~L~~ll~- 343 (399)
+..++.-.+...-...-.-+.+.+.+.+. +.++...+.++.+|+.++++-........ . ..+++.+..++.
T Consensus 422 ~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s 501 (980)
T 3ibv_A 422 QDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS 501 (980)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC
Confidence 33333222222111000011122223332 34568889999999999875332111110 0 123455666654
Q ss_pred ----CCCHHHHHHHHHHHHHhhccCC--CCcchhHHHHHh
Q 015851 344 ----SPDVQLREMSAFALGRLAQVIT--VSVLPAILIFII 377 (399)
Q Consensus 344 ----~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~ 377 (399)
.+++.|+..++++++..+..-. ..+++.++..+.
T Consensus 502 ~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll 541 (980)
T 3ibv_A 502 QVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFV 541 (980)
T ss_dssp STTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHh
Confidence 6789999999999999998654 346676666543
No 101
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.53 E-value=0.09 Score=46.17 Aligned_cols=161 Identities=11% Similarity=0.044 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCcHHHHHHHH-hccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc--CChHH
Q 015851 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLL-KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPP 211 (399)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L-~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~ 211 (399)
-++-.|.-+..+|.....+.+.+.-..++..+ ....+... . ..+..+++++.|+.. ++..+..+... .+++.
T Consensus 121 PvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~-p---~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~ 195 (304)
T 3ebb_A 121 PALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGK-P---ANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSH 195 (304)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSC-H---HHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCC-h---HHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHH
Confidence 44555555556676666665443333444222 22111111 1 457889999999995 44444444432 34555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhh--HHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851 212 LVELLEFTDTKVQRAAAGALRTLAFKNDEN--KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (399)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (399)
+...+.+.+..++..++..+.|++...-.. .+.. ...+..+..+++ ..+.+....++.+|+++...+.+..+...
T Consensus 196 ~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak 273 (304)
T 3ebb_A 196 AIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK 273 (304)
T ss_dssp HHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 666666778999999999999999731110 0110 113344445554 35889999999999999976555444444
Q ss_pred HCCCcHHHHHhhcC
Q 015851 289 AAGALQPVIGLLSS 302 (399)
Q Consensus 289 ~~~~l~~L~~lL~~ 302 (399)
.-|+-..+-++...
T Consensus 274 ~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 274 SLGVDSQIKKYSSV 287 (304)
T ss_dssp HTTHHHHGGGGGGC
T ss_pred HcCHHHHHHHHHhC
Confidence 44444444444444
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.1 Score=45.24 Aligned_cols=182 Identities=13% Similarity=0.164 Sum_probs=115.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH--HHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh---
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--- 281 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--- 281 (399)
+| +-+-|.+.++..|..|+..|..+....+... ..... ....+.+.+.+.+.+..+...++.++..++....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 45 5678899999999999999988876433221 11111 2346677788889999999999999998874221
Q ss_pred --hHHHHHHHCCCcHHHHH-hhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851 282 --NIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (399)
Q Consensus 282 --~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~ 358 (399)
.......-..+++.|+. .+.+....++..+..++..++...... .. +++.+...+.+.++.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111222345666665 477778889888888887776432111 11 2355667788899999999999999
Q ss_pred HhhccCCCCcc------hhHHHHH--hhccccHHHHHHHHhhhHhhh
Q 015851 359 RLAQVITVSVL------PAILIFI--IINECQLEVLAFVLSEMVLLF 397 (399)
Q Consensus 359 ~l~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 397 (399)
.+....+...+ +.++..+ .+.+..-.|+......++.++
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88776443322 1122111 344555566666666655544
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.48 E-value=0.0057 Score=52.06 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=95.0
Q ss_pred hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCc
Q 015851 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN 173 (399)
Q Consensus 94 ~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~ 173 (399)
+..|......-....+..++++++. .||..++..| . .+.+..++++.+.
T Consensus 64 ~~VR~~AA~~l~~~~l~~L~~D~~~------------~VR~~aA~~L---~--------------~~~L~~ll~D~d~-- 112 (244)
T 1lrv_A 64 WERRAIAVRYSPVEALTPLIRDSDE------------VVRRAVAYRL---P--------------REQLSALMFDEDR-- 112 (244)
T ss_dssp HHHHHHHHTTSCGGGGGGGTTCSSH------------HHHHHHHTTS---C--------------SGGGGGTTTCSCH--
T ss_pred HHHHHHHHHhCCHHHHHHHccCcCH------------HHHHHHHHHC---C--------------HHHHHHHHcCCCH--
Confidence 6677766665445566667676665 6777777542 1 1234445554444
Q ss_pred cccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHH
Q 015851 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (399)
Q Consensus 174 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~ 253 (399)
.++..++..+ . .+.+..+++++++.+|..++.. +. .+.
T Consensus 113 ------~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~ 150 (244)
T 1lrv_A 113 ------EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGR 150 (244)
T ss_dssp ------HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGG
T ss_pred ------HHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHH
Confidence 6776666532 1 1245566778888888888762 11 123
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 015851 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (399)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 333 (399)
+..+++++++.||..++.. +. .+.+..++.++++.|+..++..+
T Consensus 151 l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------ 194 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------------ 194 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------------
T ss_pred HHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------------
Confidence 4456677888888877774 11 12344566777888888777642
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHH
Q 015851 334 AVRPLIEMLQSPDVQLREMSAFAL 357 (399)
Q Consensus 334 ~v~~L~~ll~~~~~~v~~~a~~~L 357 (399)
..+.|..++.++++.||..++..+
T Consensus 195 ~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 195 RGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp CGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHcC
Confidence 124566677777888887777764
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.42 E-value=0.062 Score=46.05 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhh----cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHH
Q 015851 180 SVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~ 255 (399)
.+...++.+|..+.. .+..... ....-++|.|++-+.++...+|..+-.++..+..-.+. ..+++.++
T Consensus 102 ~v~~~~L~~L~~l~~~l~~~~y~~~~-~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~ 173 (266)
T 2of3_A 102 AALIKVLELCKVIVELIRDTETPMSQ-EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLL 173 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHH
Confidence 666667777666642 1111111 11134679999999999999999988888776641111 23567788
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc---HHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL---QPVIGLLSSCCSESQREAALLLGQFA 319 (399)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~v~~~a~~~L~~l~ 319 (399)
.-+.+.+..+|..++..+..+...... . ....+ +.+..++.+++..+|..|..++..+-
T Consensus 174 ~g~ksKN~R~R~e~l~~l~~li~~~G~--~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 174 DALKSKNARQRSECLLVIEYYITNAGI--S---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHCS--G---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhcCC--C---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888899999999999999998742111 1 23478 99999999999999999999888664
No 105
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.36 E-value=0.016 Score=60.10 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (399)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 293 (399)
.++..++.++++++.++.+..+....-.-..+++.|+.++.+ +...++..++|+++..+..-..... . =..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence 568999999999999997544332222222367788888763 2334666788999887642111111 1 12345
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh----------cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ----------RGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~----------~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 363 (399)
..+++.+..+++.++..||+++.++|. +++..+.. ..++..+......-++.-+..+..+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 556666767778999999999999984 45555532 12233344444445777778999999999998
Q ss_pred CCCC
Q 015851 364 ITVS 367 (399)
Q Consensus 364 ~~~~ 367 (399)
.++.
T Consensus 620 ~~~~ 623 (1023)
T 4hat_C 620 ERSV 623 (1023)
T ss_dssp CCSH
T ss_pred CCCH
Confidence 8753
No 106
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.21 E-value=0.14 Score=44.96 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--HHHHHHHCCCcHH
Q 015851 220 DTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQP 295 (399)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~l~~ 295 (399)
.+..+-.++++++|+-. ++.++..+... .+++.+...+.+++..++..++.++.|++..... .... ...++..
T Consensus 161 ~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~ 237 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSL 237 (304)
T ss_dssp CHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHH
Confidence 46678999999999998 67777766652 3455555555667889999999999999853110 0011 0113444
Q ss_pred HHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHH
Q 015851 296 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFAL 357 (399)
Q Consensus 296 L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L 357 (399)
+..++. ..+.+..-.++.+|+++...+.+..+.....|+-..+-++... ..++|.+.+...+
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 445554 3577888889999999997655555544455666666666654 4566666554443
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.19 E-value=0.0054 Score=57.45 Aligned_cols=176 Identities=17% Similarity=0.103 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
.+++.++.+|+.+ .+-+.- ..++..++..+..+.++++..++-.|..+.. .... -.++++.++..|.
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~--Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED--KDGLCRKLVSLLS 309 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC--HHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH--HHHHHHHHHhhcC
Confidence 7999999999998 544432 3344555555577889999999999998821 1111 1346788888999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh--HHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~ 337 (399)
+.+++|+..|+.+|.-++ .+..... ++..+...|.+-+. .........|+.++...+. .-.....+|.
T Consensus 310 D~DDDVRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPR 379 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKD 379 (800)
T ss_dssp CSSHHHHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGG
T ss_pred CcccHHHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHH
Confidence 999999999999999998 2332222 24555555543211 2223344566666654321 1112478999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhhccc
Q 015851 338 LIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINEC 381 (399)
Q Consensus 338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 381 (399)
|..++.++-+.||.++..+|..+. ..+++..+-+-+++++.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL---~~~~LRLIFQNILLE~n 420 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS---EESIDFLVAEVVLIEEK 420 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC---CHHHHHHHHHHHHHCSC
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhCCc
Confidence 999999999999999999998887 33345555555555555
No 108
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.17 E-value=0.092 Score=54.27 Aligned_cols=102 Identities=13% Similarity=-0.021 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHH-HHCCCc----HHHHHhhc-----CCChHHHHHHHHHHHHhhccChhhHHHHHh
Q 015851 262 DSAIHYEAVGVIGNLVHSSPNIKKEV-LAAGAL----QPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (399)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l----~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 331 (399)
+-..++.++.+|+.++.+-....... -....+ +.+..+++ .+++.++..++++++..+..-..+
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~------ 529 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE------ 529 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC------
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------
Confidence 34678889999999886533211110 011223 44444444 567899999999999988643221
Q ss_pred cCCHHHHHHhh------CCCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851 332 RGAVRPLIEML------QSPDVQLREMSAFALGRLAQVITVSVL 369 (399)
Q Consensus 332 ~g~v~~L~~ll------~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (399)
...++.++..+ .++++.|+..|+.++.++++.......
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~ 573 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV 573 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh
Confidence 23445544444 356788999999999999998887533
No 109
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.09 E-value=0.074 Score=46.73 Aligned_cols=131 Identities=10% Similarity=0.116 Sum_probs=99.4
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHH
Q 015851 231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQR 309 (399)
Q Consensus 231 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~ 309 (399)
|.+|..+..+...-+++..++..+....+.++.++....+..|-..+.. ... ...--.+.+|.++..+. +++.++.-
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL-~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KAL-AKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGG-GTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHH-hhccccccchHHHHHhccCCCcceEE
Confidence 4566666777888899999999999999999999999999999888632 111 11111346777787776 67778888
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-C------CCHHHHHHHHHHHHHhhcc
Q 015851 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-S------PDVQLREMSAFALGRLAQV 363 (399)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~------~~~~v~~~a~~~L~~l~~~ 363 (399)
...+.|+|..++....++..+..|+++.|...+. . .+..-++.|+.+++|.-+.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRa 404 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRT 404 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHH
Confidence 9999999999887777788888999999998873 1 3555667777777766543
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.03 E-value=0.011 Score=55.41 Aligned_cols=238 Identities=14% Similarity=0.129 Sum_probs=138.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhC--CChHHHHhccc-C-----CCCcccccCCCcchHHHHHHHHHHHHHh
Q 015851 73 LEADRAAAKRATHVLAELAKN-EEVVNWIVEG--GAVPALVKHLQ-A-----PPTSEADRNLKPFEHEVEKGSAFALGLL 143 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~--g~l~~L~~lL~-~-----~~~~~~~~~~~~~~~~~~~~a~~~L~~l 143 (399)
-++.-++|.-|+-.|+.+.+. .......... ++.-.|+.++. + .++.+.. .||+.|+.+|+.+
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVA--------PVRETaAQtLGaL 255 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVA--------PVRDAAAYLLSRI 255 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBC--------HHHHHHHHHHHHH
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeee--------ehHHHHHHHHHHH
Confidence 355678999999999998762 2110000001 11222222221 1 1112222 7899999999998
Q ss_pred cCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 015851 144 AVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (399)
Q Consensus 144 ~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (399)
- .-+.. ..++..++..+.. ..|+++.-++-.|.++...-. . -.++++.++.-|.+.+.+|
T Consensus 256 ~-hLp~e-----~~IL~qLV~~l~~--------~~WEVRHGGLLGLKYL~DLL~---~---Ld~Vv~aVL~GL~D~DDDV 315 (800)
T 3oc3_A 256 Y-PLIGP-----NDIIEQLVGFLDS--------GDWQVQFSGLIALGYLKEFVE---D---KDGLCRKLVSLLSSPDEDI 315 (800)
T ss_dssp T-TTSCS-----CCHHHHHTTGGGC--------SCHHHHHHHHHHHHHTGGGCC---C---HHHHHHHHHHHTTCSSHHH
T ss_pred H-hCChh-----HHHHHHHHhhcCC--------CCeeehhhhHHHHHHHHHHHH---H---HHHHHHHHHhhcCCcccHH
Confidence 3 22111 2334444432222 346999999999999821111 1 2456788888899999999
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CH-HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc
Q 015851 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (399)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (399)
+..|+.+|.-++. ++....+ +..+...|.+- |- .........|+.|+..... ...+...+|.|..++.
T Consensus 316 RAVAAetLiPIA~--p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLR 385 (800)
T 3oc3_A 316 KLLSAELLCHFPI--TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFT 385 (800)
T ss_dssp HHHHHHHHTTSCC--SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGT
T ss_pred HHHHHHHhhhhcc--hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhc
Confidence 9999999998882 3322222 33344444332 11 2233344455555543221 1112367899999999
Q ss_pred CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (399)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~ 358 (399)
++-+.||..++.+|..+. +....+.+. .+++-..+++++..+..+-.
T Consensus 386 HtITSVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 386 SPVPEVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CSSHHHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence 999999999999998886 233333222 23555678888888777664
No 111
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.02 E-value=0.32 Score=50.87 Aligned_cols=177 Identities=12% Similarity=0.074 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l 257 (399)
+....+..+|..++...+. .+. .-+.+.+-..+. +.++..++.++++++.++.........-.-..+++.+..+
T Consensus 428 ~~~~~~~~~L~~l~~~~~~---~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l 503 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVI---DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHH---HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence 3444566677777643321 111 112234444444 3568899999999999986433221111111244445554
Q ss_pred hcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH--
Q 015851 258 LRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV-- 330 (399)
Q Consensus 258 l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-- 330 (399)
... +.+-++..++++++..+..-...... -..+++.++..|.++++.++..|++++.+++.. +...+.
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~--l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~---~~~~l~~~ 578 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQ 578 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH---HTHHHHSC
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHhhcc
Confidence 332 23345556889999876321111111 123567777788888899999999999999853 333433
Q ss_pred --------hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 331 --------QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 331 --------~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
-..++..+..++..-+.+-......+++.++...+
T Consensus 579 ~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 579 QPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp CTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 12234444455555555556677788888876655
No 112
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.90 E-value=1.1 Score=46.48 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC-----hHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 015851 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (399)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~ 336 (399)
+-.....++|+++.++..-......-.-..+++.|+.+...+. ..++...+++++..+..-..+-+.+.. .+.
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~--vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT--VVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--HHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH--HHH
Confidence 3566777888888886432211111111234555555554331 234555667888776542233232222 467
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 337 PLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.|++.+.++++.|+.+|+.++..++..-...
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888889999999999999999876643
No 113
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.83 E-value=0.032 Score=57.83 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHH
Q 015851 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (399)
Q Consensus 178 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 252 (399)
.|..++.++++++.++.........-.-..+++.|+.++.+ +...++..++++++..+..-... ..+.. ..+.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~-~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-TVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHH-HHHH
Confidence 46888999999999995444322323334667888888764 22345566778888776521111 11222 1445
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH------CCCcHHHHHh----hcCCChHHHHHHHHHHHHhhccC
Q 015851 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGL----LSSCCSESQREAALLLGQFAATD 322 (399)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~ 322 (399)
.|+..+.++++.++..|++++.+++.. ++..+.. ...++.++.. +..-++.-...+..+++.+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 566666667889999999999999853 3333432 1234444433 33345566677778888887653
Q ss_pred h
Q 015851 323 S 323 (399)
Q Consensus 323 ~ 323 (399)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 3
No 114
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.64 E-value=0.28 Score=43.16 Aligned_cols=134 Identities=15% Similarity=0.245 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CC
Q 015851 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SE 261 (399)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~ 261 (399)
..+...|.-|. ++...-+-++...++..+......++.++.+..+..|...+. ....+..-. ...+|.++..+. ++
T Consensus 261 tR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD-aksL~~t~L-~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD-AKALAKTPL-ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT-CGGGGTSCC-TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc-hHHHhhccc-cccchHHHHHhccCC
Confidence 33444444444 677777778889999999999999999999999999999886 232221111 346888887776 67
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC-------ChHHHHHHHHHHHHhh
Q 015851 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFA 319 (399)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~L~~l~ 319 (399)
+.++.....+.|+|...+....+...+..|++..|-..+... +..-+..||..++|..
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 889999999999999988777778888999999888876421 2234455666665544
No 115
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.37 E-value=0.63 Score=48.64 Aligned_cols=137 Identities=10% Similarity=0.081 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (399)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 300 (399)
.+..+..+|..++.-.+. .+... +.+.+-..+.+ .+...+..++++++.++.........-.-..+++.+..+.
T Consensus 429 ~~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 344566677776642221 11111 23344444442 4668899999999999754322211111112344444432
Q ss_pred cC-----CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 301 SS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 301 ~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
.. +.+.++..++++++.++..-..+...+. .+++.++..+.++++.|+..|+.++.++++..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 2334555688999988743222222222 346778888888899999999999999998755
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.00 E-value=0.29 Score=40.78 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCCHHHHHHh
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILM 257 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~~~~~~L~~l 257 (399)
+++..++..|+.+ ... ...++.+.. +..+++..|+..++.++..++. ..++ ..++.+...
T Consensus 86 eVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W 147 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEW 147 (240)
T ss_dssp HHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHH
Confidence 8888898888777 211 123555665 5567789999999999999985 3333 267888899
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh
Q 015851 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (399)
Q Consensus 258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 331 (399)
..+++..+|..|...+.--+.. +..+.. -.-+++.+-.+..+++.-|++..++.|..++..+|+-...+++
T Consensus 148 ~~d~n~~VRR~Ase~~rpW~~~-~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 148 LKSSNLHTRRAATEGLRIWTNR-PYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHCSSHHHHHHHHHHTCSGGGS-TTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHhhHHHhcc-chhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 9999999999988876432211 110000 0013555556666788899999999999999888877666555
No 117
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.92 E-value=0.36 Score=40.19 Aligned_cols=138 Identities=13% Similarity=0.017 Sum_probs=97.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CChhHHHH
Q 015851 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVH-SSPNIKKE 286 (399)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 286 (399)
++....+..++..++|..|+..|+.+ ... ...++.+.. +-.+++=.|+..++.++..++. ..++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 34455566777789999999988877 311 124566666 4446677999999999999884 33332
Q ss_pred HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
.++.+..+..+++..+|..|...+.-.+.. +..+ ....-+++.|-.+..+++.-||+...+.|..+++..|+
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 577888999999999999988876543322 1100 00112456666677789999999999999999999886
Q ss_pred C
Q 015851 367 S 367 (399)
Q Consensus 367 ~ 367 (399)
-
T Consensus 212 ~ 212 (240)
T 3l9t_A 212 L 212 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 118
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.70 E-value=1.6 Score=36.50 Aligned_cols=146 Identities=14% Similarity=0.220 Sum_probs=96.7
Q ss_pred hcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHH
Q 015851 205 MEGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGV 272 (399)
Q Consensus 205 ~~~~i~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~ 272 (399)
..+|+..|+..|.. .+...+..++.||..+.. +..+...+.. .+.+..++..|.++++.++..++..
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leL 119 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence 35677777766642 135678889999999997 6667766666 5678999999999999999999999
Q ss_pred HHHhhcCCh-hH-HHHHH----------HCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh------hHHHHHhcC
Q 015851 273 IGNLVHSSP-NI-KKEVL----------AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD------CKVHIVQRG 333 (399)
Q Consensus 273 L~~l~~~~~-~~-~~~~~----------~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~g 333 (399)
|..+|..+. .+ ...++ +..-+..+++.+.. .+.+.+..+...+..+....++ .+..+...|
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 998886543 22 22222 23356778888874 4456666666666666544332 233455677
Q ss_pred CHHHHHHhhCCCCHHHHH
Q 015851 334 AVRPLIEMLQSPDVQLRE 351 (399)
Q Consensus 334 ~v~~L~~ll~~~~~~v~~ 351 (399)
+.+.+-++-..+++.+..
T Consensus 200 l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 200 LHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHhccCCHHHHH
Confidence 777776665555655543
No 119
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.68 E-value=2.5 Score=38.41 Aligned_cols=143 Identities=15% Similarity=0.231 Sum_probs=97.1
Q ss_pred cCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 015851 206 EGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVI 273 (399)
Q Consensus 206 ~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L 273 (399)
.+|+..|+..|. ..+...+..+++||..+.. +..+...+.. ...+..++..+.++.+.++..++..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 566777777763 1245788899999999997 5667666666 57799999999999999999999999
Q ss_pred HHhhcCCh-hH-HHHHH----------HCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh------hHHHHHhcCC
Q 015851 274 GNLVHSSP-NI-KKEVL----------AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD------CKVHIVQRGA 334 (399)
Q Consensus 274 ~~l~~~~~-~~-~~~~~----------~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~g~ 334 (399)
..+|.... .+ ...++ +..-+..++..|.. .+.+.+..+...|..+....++ .+..+...|+
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 266 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 266 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence 99986543 22 22222 23457888888886 4556666666666666654332 2334556777
Q ss_pred HHHHHHhhCCCCHHH
Q 015851 335 VRPLIEMLQSPDVQL 349 (399)
Q Consensus 335 v~~L~~ll~~~~~~v 349 (399)
.+.+-++=..+++.+
T Consensus 267 ~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 267 HQVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHHTTSCCHHH
T ss_pred HHHHHHHhcCCChhH
Confidence 777766444344433
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.33 E-value=3.1 Score=43.38 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=95.3
Q ss_pred hHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHH----HHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 015851 209 IPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT----LILMLRSEDSAIHYEAVGVIGNLVHSS 280 (399)
Q Consensus 209 i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~----L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (399)
+..+..++.+ .++.++..++-+++.|....-... ..+....++. +...+...+.+-+..++.+|+|+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~-~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT-VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC-SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 4445566654 457788888888887775110000 0111122333 4444556778888899999999963
Q ss_pred hhHHHHHHHCCCcHHHHHhhcC-------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh--CCCCHHHHH
Q 015851 281 PNIKKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLRE 351 (399)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll--~~~~~~v~~ 351 (399)
+. .++.|..++.. ....++..|+++|.+++...+... -+.++++. ...++++|.
T Consensus 470 p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHH
T ss_pred hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHH
Confidence 43 35666666632 234788899999999975443322 23455555 456888888
Q ss_pred HHHHHHHHhhccCCCCcchhHHHHHhhccccHHHHHHHHhhhHh
Q 015851 352 MSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVL 395 (399)
Q Consensus 352 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 395 (399)
+|...|... +++...+..+...+ ..|...+|..++.+.|-.
T Consensus 533 aA~~~Lm~t--~P~~~~l~~ia~~l-~~E~~~QV~sfv~S~l~s 573 (1056)
T 1lsh_A 533 RSCIVFFES--KPSVALVSMVAVRL-RREPNLQVASFVYSQMRS 573 (1056)
T ss_dssp HHHHHHHHT--CCCHHHHHHHHHHH-TTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--CcCHHHHHHHHHHH-hhCchHHHHHHHHHHHHH
Confidence 887777432 23322333333222 344566777777766543
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.23 E-value=1.2 Score=41.22 Aligned_cols=131 Identities=15% Similarity=0.056 Sum_probs=91.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (399)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (399)
..+++..++.|+..|.....+.|+..... +..++.++.+++..+|..|+..|..+|.. +.... +.+.|
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL 105 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADIL 105 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHH
Confidence 34579999999999999988888876654 55699999999999999999999999975 33333 46788
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367 (399)
Q Consensus 297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (399)
.++|++.++......-.+|..+...++.. .+..+..-+..+++.+|+.+...|..=...-+..
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~ 168 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDE 168 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchh
Confidence 99999888766555556666665444322 1222333333346778888887776655554443
No 122
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.96 E-value=2.2 Score=35.77 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=96.6
Q ss_pred ChhhHHHHHhcCcHHHHHHHHhccccCccc---cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH
Q 015851 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222 (399)
Q Consensus 146 ~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 222 (399)
.....+.+ ..+|+..|+.+|......... +...+.+..++.+|..+..........+.....+..+...|.++++.
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 111 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 111 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 34455555 467888888888764321110 11236778899999999844444444444457789999999999999
Q ss_pred HHHHHHHHHHHhhcCCh-hh-HHHHH----------hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------H
Q 015851 223 VQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------I 283 (399)
Q Consensus 223 v~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~ 283 (399)
++..++..|..++.... ++ ...+. +..-+..++..+.. .+.+.+..+...+-.+..+.++ .
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 191 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 191 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999998887433 24 33332 22345567777764 4456665555555555544332 2
Q ss_pred HHHHHHCCCcHHHHHhhcCCChHHHH
Q 015851 284 KKEVLAAGALQPVIGLLSSCCSESQR 309 (399)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~~~~~v~~ 309 (399)
+..+...|+.+.+-.+=...++.+..
T Consensus 192 R~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 192 RSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHCChHHHHHHHhccCCHHHHH
Confidence 33444555554444333334444433
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.26 E-value=1.4 Score=40.75 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
...+.++..|.....+-|..++. ++..+++++.+++..||..|.+.|..+|.+ +... .+..+|+++|+
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~QlLq 110 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHHHh
Confidence 78888999999999888876653 467799999999999999999999999974 4433 24667999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 316 (399)
.+++.-....-.+|..+...++.. .+..+...+.+++..+|+.+...|.
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHH
Confidence 888766666666666665444433 2333444444445666666665553
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.81 E-value=3.7 Score=37.25 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=99.7
Q ss_pred ChhhHHHHHhcCcHHHHHHHHhccccCccc---cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH
Q 015851 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222 (399)
Q Consensus 146 ~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 222 (399)
.....+.|. .+|+..|+.+|......... .........++.+|..+..........+.....+..+...+.+.++.
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 177 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 177 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchH
Confidence 344555665 67899999998753211100 11126778888999998844444444444457889999999999999
Q ss_pred HHHHHHHHHHHhhcCCh-hh-HHHHH----------hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------H
Q 015851 223 VQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------I 283 (399)
Q Consensus 223 v~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~ 283 (399)
++..++..|..+|.... .+ ...++ +..-+..++..|.. .+.+.+..+...+-.+..+.++ .
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 257 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 257 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999997543 33 33332 23446778888876 4566666555555555544332 2
Q ss_pred HHHHHHCCCcHHHHHhhcC-CChHHHH
Q 015851 284 KKEVLAAGALQPVIGLLSS-CCSESQR 309 (399)
Q Consensus 284 ~~~~~~~~~l~~L~~lL~~-~~~~v~~ 309 (399)
+..+...|+.+.+-. |+. .++.+..
T Consensus 258 R~ef~~~Gl~~il~~-lr~~~~~~L~~ 283 (383)
T 3eg5_B 258 RSELMRLGLHQVLQE-LREIENEDMKV 283 (383)
T ss_dssp HHHHHHTTHHHHHHH-HTTSCCHHHHH
T ss_pred HHHHHHCChHHHHHH-HhcCCChhHHH
Confidence 344445665555554 553 4444443
No 125
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.06 E-value=6.8 Score=35.52 Aligned_cols=144 Identities=14% Similarity=0.231 Sum_probs=95.5
Q ss_pred cCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 015851 206 EGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVI 273 (399)
Q Consensus 206 ~~~i~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L 273 (399)
.+|+..|+..|.. .+......+++||..+.. +..+...+.. .+++..+...+.++++.++..++..|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 4566666666531 135778899999999997 5666666665 57789999999999999999999999
Q ss_pred HHhhcCCh-hH-HHHHH----------HCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChh------hHHHHHhcCC
Q 015851 274 GNLVHSSP-NI-KKEVL----------AAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD------CKVHIVQRGA 334 (399)
Q Consensus 274 ~~l~~~~~-~~-~~~~~----------~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~g~ 334 (399)
..+|..+. .+ ...++ +..-+..++..+. +.+.+.+..++..+..+....++ .+..+...|+
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88886543 22 22222 2345677888886 44556666666666666654332 3345566777
Q ss_pred HHHHHHhhCCCCHHHH
Q 015851 335 VRPLIEMLQSPDVQLR 350 (399)
Q Consensus 335 v~~L~~ll~~~~~~v~ 350 (399)
.+.+-++-...++.+.
T Consensus 205 ~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 205 HQVLQELREIENEDMK 220 (386)
T ss_dssp HHHHHHHTTCCCHHHH
T ss_pred HHHHHHHhccCChhHH
Confidence 7776655554555443
No 126
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.93 E-value=9.5 Score=39.67 Aligned_cols=205 Identities=10% Similarity=0.021 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-----chhHHHHHh
Q 015851 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-----SSIKTRVRM 205 (399)
Q Consensus 131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~ 205 (399)
+.|.+|-..|..+-.+|+... .+..+|....+. .++..++.+|.+..... +..+. ...
T Consensus 43 ~~r~qA~~~L~q~q~sp~aw~---------~~~~iL~~s~~~-------~vR~fAa~~L~~~I~~~W~~L~~e~~~-~LR 105 (1073)
T 3gjx_A 43 AQQRMAQEVLTHLKEHPDAWT---------RVDTILEFSQNM-------NTKYYGLQILENVIKTRWKILPRNQCE-GIK 105 (1073)
T ss_dssp HHHHHHHHHHHTSSCCSCHHH---------HHTCC---CCSH-------HHHHHHHHHHHHHHHHTGGGSCHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCchHHH---------HHHHHhcCCCCH-------HHHHHHHHHHHHHHHhhhhhCCHHHHH-HHH
Confidence 567788888877776665433 333444443222 88888999999988532 12222 222
Q ss_pred cCChHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851 206 EGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (399)
Q Consensus 206 ~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (399)
...+..+...... .++.++...+.++..++... ++ .....++-++..+.. ++......+.+|..+...
T Consensus 106 ~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-----~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EE 179 (1073)
T 3gjx_A 106 KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-----HWPTFISDIVGASRT-SESLCQNNMVILKLLSEE 179 (1073)
T ss_dssp HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-----hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence 3344444443322 24677888888888888631 11 134567777777654 345556677777776532
Q ss_pred ---C------hh----HHHHHHHCCCcHHHHHh----hc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH-HH
Q 015851 280 ---S------PN----IKKEVLAAGALQPVIGL----LS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL-IE 340 (399)
Q Consensus 280 ---~------~~----~~~~~~~~~~l~~L~~l----L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L-~~ 340 (399)
. .. .+..+.. -++.++.+ |. ..++.+...+..+|..+.+.- ....+.+.++++.+ ..
T Consensus 180 V~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~ 255 (1073)
T 3gjx_A 180 VFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYK 255 (1073)
T ss_dssp HTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHH
T ss_pred HHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHH
Confidence 0 00 1112222 24555544 33 456677788888888887543 33467788888888 46
Q ss_pred hhCCCCHHHHHHHHHHHHHhhccC
Q 015851 341 MLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 341 ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
++ +++.++..|+.+|..+....
T Consensus 256 ~L--~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 256 FL--NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp TS--SSHHHHHHHHHHHHHHHHSC
T ss_pred hc--CChHHHHHHHHHHHHHHhcc
Confidence 66 47889999999999988753
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.86 E-value=7.2 Score=35.37 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=97.7
Q ss_pred hhhHHHHHhcCcHHHHHHHHhccccCccc---cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 015851 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (399)
Q Consensus 147 ~~~~~~i~~~~~i~~L~~~L~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (399)
....+.|. .+|+..|+.+|......... +........++.+|..+..........+....++..+...+.+.++.+
T Consensus 38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 34444554 56788888888654221110 112377788999999998544444444445578899999999999999
Q ss_pred HHHHHHHHHHhhcCCh-hh-HHHHH----------hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------HH
Q 015851 224 QRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IK 284 (399)
Q Consensus 224 ~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~ 284 (399)
+..++..|..+|.... .+ ...+. +..-+..++..+.. .+.+.+..+...+-.+..+.++ .+
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR 196 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 196 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999998887443 23 33322 22345567777763 4556666555555555544332 23
Q ss_pred HHHHHCCCcHHHHHhhcCCChHHHH
Q 015851 285 KEVLAAGALQPVIGLLSSCCSESQR 309 (399)
Q Consensus 285 ~~~~~~~~l~~L~~lL~~~~~~v~~ 309 (399)
..+...|+.+.+-.+=...++.+..
T Consensus 197 ~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 197 SELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHCChHHHHHHHhccCChhHHH
Confidence 4455566555554443344544443
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.49 E-value=1.9 Score=45.04 Aligned_cols=175 Identities=15% Similarity=0.109 Sum_probs=107.3
Q ss_pred cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh----cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (399)
Q Consensus 158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (399)
.+..+..+++....... ..+...++-+++.|.. .++.+..... ..+...+.+.+...+..-+..++++|+|
T Consensus 392 ~l~~~~~l~~~~~~~~~----~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNR----PILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTC----HHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccC----HHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 45556666655431110 0455666666666653 2221111000 1122334445566778888999999999
Q ss_pred hhcCChhhHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh--cCCC
Q 015851 234 LAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCC 304 (399)
Q Consensus 234 L~~~~~~~~~~~~~~~~~~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~ 304 (399)
+-. + ..++.|.+++.. ....++..|+++|.+++...+... -+.++++. ...+
T Consensus 467 ~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~ 527 (1056)
T 1lsh_A 467 AGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIK 527 (1056)
T ss_dssp HTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSC
T ss_pred cCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCC
Confidence 996 3 246667777642 245788999999999986544332 34466666 3567
Q ss_pred hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
+++|..|+..|.... .+... +..+...+. +++.+|.......|.++++....
T Consensus 528 ~EvRiaA~~~Lm~t~-P~~~~---------l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 528 SELRIRSCIVFFESK-PSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHHHHHTC-CCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred hHHHHHHHHHHHHHC-cCHHH---------HHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 799999999887643 11222 334444453 57899999999999999987765
No 129
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.66 E-value=6.1 Score=34.20 Aligned_cols=178 Identities=13% Similarity=0.084 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhc--CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLI 255 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~ 255 (399)
+-...++..|.-++. +-..-..+..+ ..+..|+ +.....+.+++.++++|+.....+|.....+.+ ..++..+.
T Consensus 43 ~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 43 ARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 467788888888884 44333344432 3333444 233456789999999999999988888777766 34444433
Q ss_pred Hhhc----C---CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhcc---Ch
Q 015851 256 LMLR----S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAAT---DS 323 (399)
Q Consensus 256 ~ll~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~---~~ 323 (399)
.-|. . ....+...-+++|.-|...+... ....+..|.+++... ++.++..++..+..+-.. ..
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~~~~~~ 195 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKADMYEN 195 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcccccccc
Confidence 3332 2 24467788888999888653222 245678888887766 788999888877766521 00
Q ss_pred ------hhHHHHHh--c---CCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccC
Q 015851 324 ------DCKVHIVQ--R---GAVRPLIEMLQS--PDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 324 ------~~~~~l~~--~---g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 364 (399)
..++.+-+ . +....+-+++++ .+..-.+.--..|.+|-+..
T Consensus 196 ~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~ 249 (315)
T 3qml_C 196 DDTNLILFKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIF 249 (315)
T ss_dssp ------------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhc
Confidence 11111110 1 123445566653 34444555667777777655
No 130
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.24 E-value=5.4 Score=34.52 Aligned_cols=145 Identities=11% Similarity=0.126 Sum_probs=94.1
Q ss_pred HHHHhhcCC------CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChh
Q 015851 211 PLVELLEFT------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 211 ~L~~ll~~~------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
.+..+++++ +......|+..|..++. .-..-..+.+.. .+.|-.++ ....+.+++.|.++|+...+++|.
T Consensus 26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~ 103 (315)
T 3qml_C 26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPP 103 (315)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHH
Confidence 345555555 34567888889999987 344444455422 34444433 345678999999999999999998
Q ss_pred HHHHHHHC--CCcHHHHHhhcC-------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC--CHHHHH
Q 015851 283 IKKEVLAA--GALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLRE 351 (399)
Q Consensus 283 ~~~~~~~~--~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~v~~ 351 (399)
....+... .++..+..-|.. ....+.+.-+.+|..|... +.. + ....+..|.+++... ++.++.
T Consensus 104 Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~-~~~---F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 104 VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVT-SED---L-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCC-STT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcC-hHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence 87777653 445555544432 2336667777888888754 321 1 234567777777655 899999
Q ss_pred HHHHHHHHhhc
Q 015851 352 MSAFALGRLAQ 362 (399)
Q Consensus 352 ~a~~~L~~l~~ 362 (399)
.+...+..+-.
T Consensus 179 Kvl~li~d~f~ 189 (315)
T 3qml_C 179 KVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 88888877663
No 131
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=86.13 E-value=5.9 Score=41.99 Aligned_cols=226 Identities=11% Similarity=0.031 Sum_probs=122.1
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (399)
Q Consensus 62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 141 (399)
+...+...++ ++.+...|..|-..|.++-.+|+ +...+...|.+... ++.+|..|+.+|.
T Consensus 13 l~~~l~~~~~-p~~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~----------~~~vR~~A~~~Lk 72 (1204)
T 3a6p_A 13 LVKAVTVMMD-PNSTQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQ----------VAIVRHFGLQILE 72 (1204)
T ss_dssp HHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTS----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCC----------CHHHHHHHHHHHH
Confidence 3444444432 22355678888888877655432 23333333332111 2378999999999
Q ss_pred Hhc-C-----ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851 142 LLA-V-----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (399)
Q Consensus 142 ~l~-~-----~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (399)
+.. . .++.+..+. ..++..+....... .+....++...+.++..++..+-. . .-.++++.++.+
T Consensus 73 ~~I~~~W~~l~~e~k~~Ir-----~~ll~~l~~~~~~~-~~~~~~vr~kla~~la~Ia~~d~p--~--~Wp~ll~~L~~~ 142 (1204)
T 3a6p_A 73 HVVKFRWNGMSRLEKVYLK-----NSVMELIANGTLNI-LEEENHIKDALSRIVVEMIKREWP--Q--HWPDMLIELDTL 142 (1204)
T ss_dssp HHHHHSGGGSCHHHHHHHH-----HHHHHHHHHSSCCT-TSSCHHHHHHHHHHHHHHHHHHST--T--TCTTHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHH-----HHHHHHHHhhcccc-ccccHHHHHHHHHHHHHHHHHhCc--c--cchHHHHHHHHH
Confidence 875 2 233333332 23444444321100 000017788888899888854211 0 124667888888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC---C---hhhH-----HHHHhc--CCHHHHHHhhcC-------------------CCH
Q 015851 216 LEFTDTKVQRAAAGALRTLAFK---N---DENK-----NQIVEC--NALPTLILMLRS-------------------EDS 263 (399)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~---~---~~~~-----~~~~~~--~~~~~L~~ll~~-------------------~~~ 263 (399)
+.+ ++.....++.+|..|+.. . ...+ ..+.+. .+++.+..++.. .+.
T Consensus 143 ~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1204)
T 3a6p_A 143 SKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANC 221 (1204)
T ss_dssp HHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhH
Confidence 866 566678888888888742 0 0111 112221 123333333432 123
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHCC--CcHHHHHhhcCCChHHHHHHHHHHHHhhccC
Q 015851 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (399)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 322 (399)
.+...++.++.+....-+. ..+.+.. .++.+..++. ++.++..|+.+|..+....
T Consensus 222 ~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 222 RVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 4666777777765543222 2333332 6677776665 4578899999999998653
No 132
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=86.10 E-value=22 Score=37.58 Aligned_cols=261 Identities=13% Similarity=0.078 Sum_probs=140.3
Q ss_pred hhhhHHHHHHHHHHHHHHcC------ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--
Q 015851 73 LEADRAAAKRATHVLAELAK------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-- 144 (399)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-- 144 (399)
.+.+..+|..|+..|.+... +++.+.. +...++..+.+.-..... ..+.++...+.++..++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~-Ir~~ll~~l~~~~~~~~~---------~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY-LKNSVMELIANGTLNILE---------EENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH-HHHHHHHHHHHSSCCTTS---------SCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHhhcccccc---------ccHHHHHHHHHHHHHHHHH
Confidence 34567889999999988753 2333333 333445544433211100 01378889999999988
Q ss_pred CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc---C---chhH-----HHHHhc--CChHH
Q 015851 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE---N---SSIK-----TRVRME--GGIPP 211 (399)
Q Consensus 145 ~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~---~~~~-----~~~~~~--~~i~~ 211 (399)
..|+. -.+.++.+++++... . ...+.++.+|..++.+ . ...+ ..+... .+++.
T Consensus 127 d~p~~-----Wp~ll~~L~~~~~~~-~--------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~ 192 (1204)
T 3a6p_A 127 EWPQH-----WPDMLIELDTLSKQG-E--------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSF 192 (1204)
T ss_dssp HSTTT-----CTTHHHHHHHHHHTC-H--------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHH
T ss_pred hCccc-----chHHHHHHHHHhcCC-H--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33422 246788888888652 1 4466678888888742 0 1111 111111 12223
Q ss_pred HHHhhcC-------------------CCHHHHHHHHHHHHHhhcCChhhHHHHHhcC--CHHHHHHhhcCCCHHHHHHHH
Q 015851 212 LVELLEF-------------------TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAV 270 (399)
Q Consensus 212 L~~ll~~-------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~ 270 (399)
+..++.+ .+..+...++.++.+....-+ ...+.+.. .++.+..++. +++++..|+
T Consensus 193 ~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ 268 (1204)
T 3a6p_A 193 LLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAA 268 (1204)
T ss_dssp HHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHH
Confidence 3333322 123466777777776554222 22333332 6666666655 478899999
Q ss_pred HHHHHhhcCC--hhHHHHHHHC---CCcHHHHHhhc--------CCChHHHHHHHHHHHHhhccChhhHHHHH-------
Q 015851 271 GVIGNLVHSS--PNIKKEVLAA---GALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVHIV------- 330 (399)
Q Consensus 271 ~~L~~l~~~~--~~~~~~~~~~---~~l~~L~~lL~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~------- 330 (399)
.+|..++... +..+..++.. ..+..++..+. ..+.++.+..+..+..+.. .....+.
T Consensus 269 ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~ 345 (1204)
T 3a6p_A 269 ECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVET 345 (1204)
T ss_dssp HHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCC
T ss_pred HHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccC
Confidence 9999998533 2222222210 11234444432 1123556666666666652 1111111
Q ss_pred ---hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851 331 ---QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 331 ---~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 364 (399)
-.++++.++.+..+++..+...+...-..+.++.
T Consensus 346 ~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 346 PSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp CTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred hhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence 0245777888887888888777776666566553
No 133
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=83.18 E-value=26 Score=31.59 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=103.6
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
.++++.++.+-.+.+.++|...+..|...+....+.. ...++.|..++.++++.+.+.++.+.+++- +...+
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~ 133 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQ 133 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHH
Confidence 5778889999888899999999999988886433332 234667888888889999998888887773 22223
Q ss_pred HHHHCCC---------------cHHHHHhhcCCChHHHHHHHHHHHHhhc----cChh----------------------
Q 015851 286 EVLAAGA---------------LQPVIGLLSSCCSESQREAALLLGQFAA----TDSD---------------------- 324 (399)
Q Consensus 286 ~~~~~~~---------------l~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~---------------------- 324 (399)
.+...+. -..++.++.+.+..++..+...+..+.- ...+
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 3333322 2345566677888999999887776541 1101
Q ss_pred -hHHHHHh--cCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCCC
Q 015851 325 -CKVHIVQ--RGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 325 -~~~~l~~--~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
....+.. .+.+..|++.+.+ .++-....+..+|..|++.-|.
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~ 260 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM 260 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH
Confidence 0112221 4677888888875 3455667788999999988875
No 134
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=80.60 E-value=22 Score=32.01 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc
Q 015851 223 VQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (399)
Q Consensus 223 v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 301 (399)
.+...+.-+..|..+ ++. .-..+++.++.+-.+.+.++|...+..|...+....+... .+++.|..+|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc
Confidence 344555555555442 221 2235788888888888999999999999988865444422 35778888888
Q ss_pred CCChHHHHHHHHHHHHhhc-------cCh---hhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851 302 SCCSESQREAALLLGQFAA-------TDS---DCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (399)
Q Consensus 302 ~~~~~v~~~a~~~L~~l~~-------~~~---~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 361 (399)
+.++.+.+.+..+.+++-. .++ +.....++ ..+-..++.++.+.+..++-.+.+.+-.+.
T Consensus 111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 8888888887776665520 011 11223332 223456777778889999999998887655
No 135
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=72.59 E-value=43 Score=28.26 Aligned_cols=153 Identities=10% Similarity=0.122 Sum_probs=95.5
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (399)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (399)
..+++.++.+..+.+.++|+..+..|...+...++.. ...++.|..+++++++.+.+.++.+.+++- +...+
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY---~~~l~ 123 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIY---KNGLQ 123 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHH
Confidence 3456677777777788999999999988885433322 234667888888889999998888777763 11122
Q ss_pred HHHHC---------------CCcHHHHHhhcCCChHHHHHHHHHHHHhhc----cChh--------------------hH
Q 015851 286 EVLAA---------------GALQPVIGLLSSCCSESQREAALLLGQFAA----TDSD--------------------CK 326 (399)
Q Consensus 286 ~~~~~---------------~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~--------------------~~ 326 (399)
.+... .+=..++.++.+.+..++..+...+..+.- .+++ ..
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~ 203 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRR 203 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCH
Confidence 22222 223455666778888999999887776541 1111 01
Q ss_pred HHHHh--cCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhccCCC
Q 015851 327 VHIVQ--RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 327 ~~l~~--~g~v~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~ 366 (399)
..+.. .+.+..|++.+.++ +..........|..+++.-|.
T Consensus 204 ~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~ 247 (257)
T 3gs3_A 204 EKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPI 247 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcH
Confidence 12221 45566666666543 344455667777777776654
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.50 E-value=10 Score=28.96 Aligned_cols=75 Identities=11% Similarity=-0.041 Sum_probs=60.6
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCC------CCHHHHHHHHHHHHHhhccC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~ 364 (399)
++..+.+-|.++++.++..|+..|-.+.... +.-...+....++..|++++.. .++.|+..+...+...+...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4677778888999999999999888887653 3455677778888899998863 47899999999999999876
Q ss_pred CC
Q 015851 365 TV 366 (399)
Q Consensus 365 ~~ 366 (399)
++
T Consensus 119 ~~ 120 (148)
T 1mhq_A 119 PE 120 (148)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.14 E-value=12 Score=28.57 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=59.9
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCC------CCHHHHHHHHHHHHHhhccC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~ 364 (399)
++..|.+-|.+.++.++..|+..|-.+..... .....+....++..|++++.. .++.|+..+...+...+...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46677788889999999999998888876443 444667777788889998853 57899999999999999876
Q ss_pred CC
Q 015851 365 TV 366 (399)
Q Consensus 365 ~~ 366 (399)
++
T Consensus 129 ~~ 130 (149)
T 3g2s_A 129 PE 130 (149)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=70.33 E-value=9.5 Score=29.75 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=58.0
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++..|.+-|.+.++.++..|+..|-.+.... ..-...+....++..|++++.. .++.|+..+...+...+....+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567777788899999999999888887653 3444566667778888888864 6789999999999998876554
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.29 E-value=5.5 Score=30.21 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=54.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 320 (399)
++..+.+-|.+.++.++..|+..|-.+..+.. .....+.+..++..+..++...++.|+..+...+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999988876443 334455556678888888877888999998888877763
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.09 E-value=24 Score=26.63 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=57.0
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++..+.+-|.+.++.++..|+..|-.+.... +.-...+....++..+.+++...++.|+..+...+...+....+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4667777788889999999988888777543 33344555666777788888777899999999999998865543
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.92 E-value=7.5 Score=30.34 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=54.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-|.+.++.++..|+..|-.+..+. ......+.+..+++.|+.++.. .++.|+..+...|...+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4556788888899999999999998888653 3444456566788888888874 567898888888777764
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.77 E-value=8.7 Score=29.43 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=55.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhcC------CChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-+.+.++.++..|+..|-.+..+. ......+.+..++..|+.++.. .+..|+..++..|...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999988653 4455666677889999998863 467899998888887764
No 143
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=66.22 E-value=6.5 Score=31.69 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=75.7
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (399)
Q Consensus 138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (399)
.+|..|..++...+ .+|.+++++.+.-..... +.......+.....|. .++...-...-+..+|.++.++-
T Consensus 27 ~aL~sL~~D~gL~~------LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl-~N~~l~lepYlH~LipsvLtCll 97 (196)
T 4atg_A 27 IAIECLEKESGLQQ------LVPYFIQHISELILKSFK--EAEVLKTCIALYFSLI-KNKHVFIDPYLHQILPSLLTCVI 97 (196)
T ss_dssp HHHHHHHHCSSCTT------THHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH-HCTTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhh------hHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHH
Confidence 35555554444433 678888777654211100 1266677777777777 45543332333456777777653
Q ss_pred C---CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 015851 218 F---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLV 277 (399)
Q Consensus 218 ~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~ 277 (399)
. +...+|..|+..+..++....... .-....+...+.+.+.++ +.....-|+..|..+.
T Consensus 98 ~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 98 GKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 3 223799999999999997322111 112233455566666543 5577777888887773
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=65.34 E-value=14 Score=28.35 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=55.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhcC------CChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-+.+.++.++..|+..|-.+..+.. .....+.+..++..|+.++.. .++.|+..++..|...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45668888889999999999999998886443 344556667788899999863 567899998888887764
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=64.64 E-value=12 Score=29.42 Aligned_cols=75 Identities=9% Similarity=-0.006 Sum_probs=60.1
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCC------CCHHHHHHHHHHHHHhhccC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQVI 364 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~ 364 (399)
++..|.+-|.+.++.++..|+..|-.|..... .-...+....++..|++++.. .+..|+..+...+...+...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 35678888889999999999999988886543 444567777888889998852 46899999999999999876
Q ss_pred CC
Q 015851 365 TV 366 (399)
Q Consensus 365 ~~ 366 (399)
..
T Consensus 131 ~~ 132 (171)
T 1juq_A 131 PE 132 (171)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=64.14 E-value=9 Score=30.15 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=55.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhcC------CChHHHHHHHHHHHHhhcc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAAT 321 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~ 321 (399)
++..|.+-+.+.++.++..|+.+|-.+..+.. .....+.+..++..|+.++.. .+..|+..++..|...+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35668888889999999999999999886543 344456667788999998862 3568999988888887643
No 147
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=63.19 E-value=5.4 Score=33.75 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh----cC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL----EF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 251 (399)
..+..+++++.|+..+....+..+........+++.+ .+ .+..++..++..+.|++...-..+. +....
T Consensus 105 ~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~ 181 (253)
T 3gae_A 105 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELL 181 (253)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHH
T ss_pred hHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHH
Confidence 6788899999999965553454443322233344333 22 2567888999999999963111110 12233
Q ss_pred HHHHHhhcC---------CCHHHHHHHHHHHHHhhcCCh
Q 015851 252 PTLILMLRS---------EDSAIHYEAVGVIGNLVHSSP 281 (399)
Q Consensus 252 ~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~ 281 (399)
..++..+.. .+++....++-++|++...++
T Consensus 182 ~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 182 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp HHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 445554442 377899999999999986443
No 148
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=63.14 E-value=14 Score=33.71 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 251 (399)
..+..+++++.|+..+....+..+........+++.+. ..+..++..++..+.|++...-..+ .+....
T Consensus 277 an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~ 353 (425)
T 3pst_A 277 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELL 353 (425)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHH
T ss_pred hHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHH
Confidence 77788999999999654433433322222344554432 1245788899999999996311100 012234
Q ss_pred HHHHHhhc---------CCCHHHHHHHHHHHHHhhcCChhH
Q 015851 252 PTLILMLR---------SEDSAIHYEAVGVIGNLVHSSPNI 283 (399)
Q Consensus 252 ~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~ 283 (399)
..++.++. ..+++....++.+|++|....+..
T Consensus 354 ~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~ 394 (425)
T 3pst_A 354 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 394 (425)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 45555555 258899999999999998654443
No 149
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=62.89 E-value=7 Score=33.08 Aligned_cols=139 Identities=8% Similarity=0.010 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChh-hHHHHHhcCc
Q 015851 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPE-HQQLIVDNGA 158 (399)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~ 158 (399)
+.-++..++-+..++... +.+..++....++. .+..+.-++++++|+..++. .+..+.....
T Consensus 71 ~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~-----------~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~ 133 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNK-----------NITLTMLTVRILVNCFNNENWGVKLLESNQV 133 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCS-----------SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHH
T ss_pred cchHHHHHHHHHcCCchH------HHHHHHHHHhcCCC-----------chhHHHHHHHHHHHcccCCchHHHHHhcchh
Confidence 446788888877765432 22332222221111 23678899999999998887 5666654323
Q ss_pred HHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc---------CCCHHHHHHHHH
Q 015851 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE---------FTDTKVQRAAAG 229 (399)
Q Consensus 159 i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~ 229 (399)
...++..+...-.+........++..++..+.|++......+. +......+++++. ..+++....++-
T Consensus 134 ~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~Lv 210 (253)
T 3gae_A 134 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTV 210 (253)
T ss_dssp HTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 4444444422111100001117888889999999952111000 0122234444443 136788899999
Q ss_pred HHHHhhcCC
Q 015851 230 ALRTLAFKN 238 (399)
Q Consensus 230 ~L~~L~~~~ 238 (399)
+|++|....
T Consensus 211 AlGtL~~~~ 219 (253)
T 3gae_A 211 AYGNLATVE 219 (253)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhCc
Confidence 999999743
No 150
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=60.61 E-value=12 Score=33.30 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh----c----CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCH
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL----E----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 251 (399)
..+..+++++.|+..+....+..+........+++.+ . ..+..++..++..+.|++......+ .+....
T Consensus 214 ~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~ 290 (362)
T 3l3f_X 214 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELL 290 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHH
T ss_pred hHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHH
Confidence 7788899999999965443343332211123333333 1 2246788899999999996311100 012234
Q ss_pred HHHHHhhc---------CCCHHHHHHHHHHHHHhhcCChh
Q 015851 252 PTLILMLR---------SEDSAIHYEAVGVIGNLVHSSPN 282 (399)
Q Consensus 252 ~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~ 282 (399)
..++.++. ..+++....++.+|++|....+.
T Consensus 291 ~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 291 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45666555 25889999999999999864443
No 151
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=57.21 E-value=49 Score=25.05 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=61.0
Q ss_pred hhHHHHHHHCCCcHHHHHhhcC------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHH
Q 015851 281 PNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREM 352 (399)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~ 352 (399)
......+++.|++..+-.+|.- ++..++.....+|.++- -.+..+.+.|+-..+..+-++ ..++.++.
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~l 126 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRAS 126 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHH
Confidence 4556888999999999999962 46689999999999883 446778888777777666654 57889999
Q ss_pred HHHHHHHhhc
Q 015851 353 SAFALGRLAQ 362 (399)
Q Consensus 353 a~~~L~~l~~ 362 (399)
|...+...++
T Consensus 127 a~~Li~~WsR 136 (145)
T 2xpp_A 127 AKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887764
No 152
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=55.26 E-value=20 Score=32.69 Aligned_cols=105 Identities=7% Similarity=-0.013 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcC-cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~-~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (399)
+..+..+++++.|+..++.....++... ....++..+...-..........++..++..+.|++......+. ....
T Consensus 276 ~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el 352 (425)
T 3pst_A 276 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 352 (425)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTH
T ss_pred hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 3678899999999998888544444332 24555555532211000001117888888999999952111000 0122
Q ss_pred hHHHHHhhc---------CCCHHHHHHHHHHHHHhhcC
Q 015851 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~ 237 (399)
...+.+++. ..+++....++-+|++|...
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 344555554 24788999999999999963
No 153
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=52.53 E-value=17 Score=32.47 Aligned_cols=105 Identities=7% Similarity=-0.013 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcC-cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (399)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~-~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (399)
+..+..+++++.|+..++.....++... ....++..+...-..........++..++..+.|++......+. ....
T Consensus 213 ~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el 289 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 289 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTH
T ss_pred hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 3678899999999998888544444322 23344444422110000001117888888999999952111000 0123
Q ss_pred hHHHHHhhc---------CCCHHHHHHHHHHHHHhhcC
Q 015851 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFK 237 (399)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~ 237 (399)
...+.+++. ..+++....++-+|++|...
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 345555554 25788999999999999963
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.23 E-value=27 Score=28.86 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=57.2
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (399)
++..|.+-|.+.++.++..|+..|-.+.... ..-...+....++..|.+++. ..++.|+..+...+...+....+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4667778888999999999999888887542 334555666677777777775 46789999999999999876544
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.91 E-value=18 Score=29.88 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=53.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-|.+.++.++..|+.+|-.+..+.. .....+.+..+++.|..++. ..+..|+..++..|...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45668888889999999999999988875433 33455556667777888776 3567899998888887764
No 156
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=46.72 E-value=89 Score=24.34 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=62.3
Q ss_pred hhHHHHHHHCCCcHHHHHhhcC------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHH
Q 015851 281 PNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREM 352 (399)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~ 352 (399)
......+++.|++..+-.+|.- ++..++.....+|.++- .....+...|+=..+..+-++ ..++.+..
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 5566789999999999999862 45689999999999873 345677777776666655544 57889999
Q ss_pred HHHHHHHhhccCC
Q 015851 353 SAFALGRLAQVIT 365 (399)
Q Consensus 353 a~~~L~~l~~~~~ 365 (399)
|...+...++.--
T Consensus 142 a~~Li~~WsRpI~ 154 (170)
T 3nfq_A 142 AEKLIAEWTRPII 154 (170)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.94 E-value=37 Score=27.79 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=52.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-HHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhh
Q 015851 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFA 319 (399)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~ 319 (399)
++..|.+-|.+.++.++..|+..|-.+..+... ....+.+..+++.|..++. ..+..++..++..+...+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 455677788889999999999999998865433 3345555667888888876 345688888887777665
No 158
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=40.80 E-value=34 Score=35.30 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcC-ChHHHHHhhcCCCH-HHHHH-HHHHHHHhhcCChhhHHHHHhcCCHHHHHHh
Q 015851 181 VIRRAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDT-KVQRA-AAGALRTLAFKNDENKNQIVECNALPTLILM 257 (399)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~-~v~~~-a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l 257 (399)
....++.-|...........-.-.-.+ .+|.++.+....+. ++... +..++..++. .+-....+-.. +..+...
T Consensus 733 ~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~-~~~~~~~~~~~--l~~l~~~ 809 (997)
T 1vsy_5 733 RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGY-MPIRKNHVAAI--VDYVCSS 809 (997)
T ss_dssp HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS-SCCCHHHHHHH--HHHSSCT
T ss_pred HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc-CCCCHHHHHHH--HHHHHHH
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC-hHHHHHHHHHHHHhhccC-h-hhHHHHHhcC
Q 015851 258 LR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATD-S-DCKVHIVQRG 333 (399)
Q Consensus 258 l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~-~-~~~~~l~~~g 333 (399)
.. +++- .|..++..+..+...+--....-....+...++.+|.++. .+||+.|+.+|+.+..+. + .....++..
T Consensus 810 ~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~- 887 (997)
T 1vsy_5 810 NVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIER- 887 (997)
T ss_dssp TTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHH-
T ss_pred HhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHH-
Q ss_pred CHHHHHHhhCCCCH---------------HHHHHHHHHHHHhhccCC
Q 015851 334 AVRPLIEMLQSPDV---------------QLREMSAFALGRLAQVIT 365 (399)
Q Consensus 334 ~v~~L~~ll~~~~~---------------~v~~~a~~~L~~l~~~~~ 365 (399)
+-..-.. ..++.|+-+|+.+....|
T Consensus 888 -------f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~P 927 (997)
T 1vsy_5 888 -------FAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFP 927 (997)
T ss_dssp -------HTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCS
T ss_pred -------HHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCC
No 159
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=40.77 E-value=2.2e+02 Score=26.18 Aligned_cols=243 Identities=8% Similarity=-0.019 Sum_probs=0.0
Q ss_pred ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhcccc
Q 015851 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMD 171 (399)
Q Consensus 93 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~ 171 (399)
++......++...+..|+.+++++++ .=|...-.+|..+- .....|..+... +-..+.+++.....
T Consensus 151 ~~~~~k~~id~~Fi~~Ll~lfdSeDp------------RERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~ 217 (449)
T 2npp_B 151 QPNIAKKYIDQKFVLQLLELFDSEDP------------RERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEH 217 (449)
T ss_dssp CSTTGGGTSCHHHHHHHHHTTTSSTH------------HHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSC
T ss_pred ChhhhhhhCCHHHHHHHHHHcCCCCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCC
Q ss_pred CccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCC
Q 015851 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 250 (399)
Q Consensus 172 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 250 (399)
. .=....+.+++.+..+-..--..-...-....|+.+.+... .........++......++.....++..
T Consensus 218 ~-------nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~-- 288 (449)
T 2npp_B 218 H-------NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMA-- 288 (449)
T ss_dssp C-------SCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHH--
T ss_pred C-------CCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHH--
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH
Q 015851 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (399)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 330 (399)
|++.==..+..=...-+.-|..+...-+.....-+...+...+...+.+++..|.+.|+....| +.....+.
T Consensus 289 ---LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~ 360 (449)
T 2npp_B 289 ---LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLIS 360 (449)
T ss_dssp ---HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHH
T ss_pred ---HHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHH
Q ss_pred h--cCCHHHHHHhhCCC-----CHHHHHHHHHHHHHhhccCC
Q 015851 331 Q--RGAVRPLIEMLQSP-----DVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 331 ~--~g~v~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~ 365 (399)
+ ..++|.+..-+... +..|+..+..++..+..-++
T Consensus 361 ~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 361 DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp TTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred hchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCH
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=39.97 E-value=45 Score=25.65 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=51.4
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHH-HHHhhcC---CChHHHHHHHHHHHHhhc
Q 015851 250 ALPTLILMLR-SEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQP-VIGLLSS---CCSESQREAALLLGQFAA 320 (399)
Q Consensus 250 ~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~-L~~lL~~---~~~~v~~~a~~~L~~l~~ 320 (399)
++..|.+-+. +.++.++..|+..|-.+..+. +.....+.+..+++. |+.++.. ++..|+..+...|...+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3556777887 478999999999999888654 444445666678887 7787742 345888888888777763
No 161
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=38.94 E-value=1.7e+02 Score=24.48 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=88.6
Q ss_pred hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC--ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (399)
Q Consensus 58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 135 (399)
...++++.|.+.-...+ ..+...+.-...+.- +|..-..+ ++.++++..+.+. ++|+.
T Consensus 13 ~~~~v~~lln~A~~~~~---~~kl~~L~qa~el~~~~dp~ll~~~-----l~~il~~~~~~~~------------~vrk~ 72 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASP---STKCELLAKVQETVLGSCAELAEEF-----LESVLSLAHDSNM------------EVRKQ 72 (257)
T ss_dssp HHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHGGGGCSCH------------HHHHH
T ss_pred HHHHHHHHHHHhhhcCc---HHHHHHHHHHHHHHHccCHhHHHHH-----HHHHHHhccCChH------------HHHHH
Confidence 45667777776653222 256666776777554 35544444 6777777655433 89999
Q ss_pred HHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-------cCch----hHHHH
Q 015851 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-------ENSS----IKTRV 203 (399)
Q Consensus 136 a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-------~~~~----~~~~~ 203 (399)
.+..+...+ ..++.... .++.|..++.+.+. .+.+.+..+..++-. .++. .....
T Consensus 73 ~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d~--------~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W 139 (257)
T 3gs3_A 73 VVAFVEQVCKVKVELLPH-----VINVVSMLLRDNSA--------QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAW 139 (257)
T ss_dssp HHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 999999988 55544332 56677777775333 666666665544431 1221 11111
Q ss_pred Hhc-CChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851 204 RME-GGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (399)
Q Consensus 204 ~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (399)
..- ..-..++.++.+.+..++..+...+-.+.
T Consensus 140 ~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 140 NILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 111 22356777788899999999998887765
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.14 E-value=61 Score=26.44 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=56.2
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCC
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
++..|.+-|.+.++.++..|+..|-.+..... .-...+....++..|.+++. ..+..|+..+...+...+....
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 45667777888999999999999988886543 34455666667788888775 4578999999999988886544
No 163
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=35.65 E-value=2.5e+02 Score=25.36 Aligned_cols=246 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccC
Q 015851 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (399)
Q Consensus 93 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~ 172 (399)
++......++...+..|+.+++++++ .=|...-.+|.++-..--....++...+-..+.+++.....-
T Consensus 118 ~~~~~k~~id~~Fi~~Ll~lfdSeDp------------rER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~ 185 (403)
T 3fga_B 118 QPNIAKKYIDQKFVLQLLELFDSEDP------------RERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHH 185 (403)
T ss_dssp CHHHHTTTSCHHHHHHHHHGGGCSCH------------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ChhhHHhhcCHHHHHHHHHHcCCCCh------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccC
Q ss_pred ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCH
Q 015851 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNAL 251 (399)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 251 (399)
.=....+.+++.+..+-..--..-...-....|+.+-+... .........++......++.....++..
T Consensus 186 -------~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~--- 255 (403)
T 3fga_B 186 -------NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMA--- 255 (403)
T ss_dssp -------TTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHH---
T ss_pred -------CCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHH---
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHH-----HHhhccChhhH
Q 015851 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL-----GQFAATDSDCK 326 (399)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L-----~~l~~~~~~~~ 326 (399)
|++.=-..+..=...-+.-+..+...-+.....-+...+...+...+.+++..|.+.|+... .++...+....
T Consensus 256 --LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~I 333 (403)
T 3fga_B 256 --LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKI 333 (403)
T ss_dssp --HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHH
T ss_pred --HHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHH
Q ss_pred HHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhccCCC
Q 015851 327 VHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQVITV 366 (399)
Q Consensus 327 ~~l~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~ 366 (399)
-.++ ++.|.+..... +..++..+..++..+..-++.
T Consensus 334 lPii----~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 334 LPIM----FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHHH----HHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHH----HHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHH
No 164
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.19 E-value=76 Score=24.32 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=54.8
Q ss_pred CcHHHHHhhc-CCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHH-HHHhhC---CCCHHHHHHHHHHHHHhhccCC
Q 015851 292 ALQPVIGLLS-SCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRP-LIEMLQ---SPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 292 ~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~-L~~ll~---~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
++..|.+-|+ ++++.++..|+..|-.+.... +.-...+....++.. |++++. .++..|+..+...+...+....
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 4566777786 578899999999888887653 444556667777877 778774 2456899999999998887543
No 165
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=30.53 E-value=1.7e+02 Score=22.01 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=59.5
Q ss_pred CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--CHH
Q 015851 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTK 222 (399)
Q Consensus 145 ~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~ 222 (399)
.....+..+++.|++..+-..|.--++.. -+...++...+.+|.++-.. ++.+..+|.-..++.+-+++ .++
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgs--LP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvv~~l~k~~~et~~ 122 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKS--MPNIKIRKRLLDVLKTMKIH----KEHLVTSGVGKIVYFYSINPKESKE 122 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSC--CCCHHHHHHHHHHHHTSCCC----HHHHHHHCHHHHHHHHHHCTTSCHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCC--CCCHHHHHHHHHHHHHCCCC----HHHhhcCCCCcchhhhhcCCccCHH
Confidence 44567888999999999999998654432 23358999999999988522 44566666666666665554 477
Q ss_pred HHHHHHHHHHHhh
Q 015851 223 VQRAAAGALRTLA 235 (399)
Q Consensus 223 v~~~a~~~L~~L~ 235 (399)
.+..|-..+..-+
T Consensus 123 nk~la~~Li~~Ws 135 (145)
T 2xpp_A 123 VRASAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887777665443
No 166
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=27.07 E-value=2.5e+02 Score=22.67 Aligned_cols=137 Identities=8% Similarity=-0.070 Sum_probs=79.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 015851 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (399)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (399)
.+..+..++.-+.+..|+..+........+.. ++.+-..+.. ++=.+....+.+++.+....+..
T Consensus 59 ~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~--------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------ 124 (220)
T 2b6c_A 59 EIEAYYQKTEREYQYVAIDLALQNVQRFSLEE--------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------ 124 (220)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH--------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG------
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH--------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH------
Confidence 34555666777788888777776542111111 1112222222 33344544445566654333332
Q ss_pred CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL 369 (399)
Q Consensus 290 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (399)
+.+.+..+..+++.-++..|+..+.... .......+ ++.+-.++.+++.-|+++..|+|..++...++...
T Consensus 125 --~~~~i~~W~~s~~~w~rR~ai~~~l~~~--~~~~~~~~-----~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~ 195 (220)
T 2b6c_A 125 --LPTIFALFYGAENFWNRRVALNLQLMLK--EKTNQDLL-----KKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVE 195 (220)
T ss_dssp --HHHHHHHHTTCSSHHHHHHHHHTTTTCG--GGCCHHHH-----HHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHHHH--HCCCHHHH-----HHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 2456778888888888888776543221 11121111 34444577888999999999999999998876444
Q ss_pred h
Q 015851 370 P 370 (399)
Q Consensus 370 ~ 370 (399)
+
T Consensus 196 ~ 196 (220)
T 2b6c_A 196 E 196 (220)
T ss_dssp H
T ss_pred H
Confidence 4
No 167
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=26.95 E-value=2.5e+02 Score=22.65 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (399)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (399)
++....+.++..+....+. ...+.+...+.+++.-+++.|...+. .......... .++.+-.++.
T Consensus 105 d~~D~~a~~~~~~~~~~~~--------~~~~~i~~W~~s~~~w~rR~ai~~~l--~~~~~~~~~~-----~~~i~~~~~~ 169 (220)
T 2b6c_A 105 DSVDAWRKFFGSWVALHLT--------ELPTIFALFYGAENFWNRRVALNLQL--MLKEKTNQDL-----LKKAIIYDRT 169 (220)
T ss_dssp HHHHHHHHHHHHHHHHSGG--------GHHHHHHHHTTCSSHHHHHHHHHTTT--TCGGGCCHHH-----HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHChH--------HHHHHHHHHHcCCCHHHHHHHHHHHH--HHHHCCCHHH-----HHHHHHHhCC
Confidence 4444444455555533332 12355777888999888888876542 2211111111 2455555777
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 015851 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (399)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (399)
+++.-|+....|+|..++..+++....++.
T Consensus 170 d~~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 170 TEEFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 888899999999999999877776555553
No 168
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=26.05 E-value=1.5e+02 Score=22.20 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=47.0
Q ss_pred CcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhC----CCC--------HHHHHHHHHHHH
Q 015851 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ----SPD--------VQLREMSAFALG 358 (399)
Q Consensus 292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~----~~~--------~~v~~~a~~~L~ 358 (399)
+++.|.+-|...++.++..|+.+|-.|+..+. ..+..+... +. +++.+. .++ ..||..|..++.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~--~~-~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN--SV-AVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT--TH-HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh--HH-HHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47788888888889999999999999996544 444444443 12 233332 112 457888888777
Q ss_pred HhhccCC
Q 015851 359 RLAQVIT 365 (399)
Q Consensus 359 ~l~~~~~ 365 (399)
.|-....
T Consensus 127 ll~d~~~ 133 (140)
T 1vdy_A 127 AIFSEEN 133 (140)
T ss_dssp HHTCCSS
T ss_pred HHhCcCC
Confidence 7765443
No 169
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=25.93 E-value=47 Score=26.67 Aligned_cols=115 Identities=15% Similarity=0.046 Sum_probs=60.5
Q ss_pred hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (399)
Q Consensus 59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~ 138 (399)
.|.++.++.+-....-.|...-...+.....+..++...-...-+-.+|+++.++-...... ..+|..|+.
T Consensus 42 lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~---------~~LRd~AA~ 112 (196)
T 4atg_A 42 VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVD---------DDVRKMSAD 112 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCC---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCH---------HHHHHHHHH
Confidence 34444444333321222555555666666666665432222222335777777665433211 179999999
Q ss_pred HHHHhcC--C---hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHh
Q 015851 139 ALGLLAV--K---PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193 (399)
Q Consensus 139 ~L~~l~~--~---~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~ 193 (399)
.|..++. + +..+. ..+..+.+.+.++..+. ....-|+..|..+-
T Consensus 113 lL~~I~~~~~~~y~~L~~-----RI~~tl~k~l~dp~~~l------~t~YGAi~GL~~lG 161 (196)
T 4atg_A 113 IVKYIYDTYSRSYKTLAP-----RVLKTLKGVWMDPNRSE------DSQYGALYCLSILS 161 (196)
T ss_dssp HHHHHHHHHTTTSTTHHH-----HHHHHHHHHHTCTTSCH------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCccCchHHH-----HHHHHHHHHHcCCCCCh------HHHHHHHHHHHHhH
Confidence 9999982 1 22222 24556666666554321 44555555555555
No 170
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.75 E-value=2.2e+02 Score=21.34 Aligned_cols=80 Identities=9% Similarity=0.055 Sum_probs=48.3
Q ss_pred hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (399)
Q Consensus 60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a 136 (399)
..+++.|.+-+. +.++.+..+|+.+|-.++.+ +.++..+... ..|..+.++=-.+++.- .......||..|
T Consensus 48 ~eim~~L~kRL~--~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~----G~d~g~~VR~~A 121 (140)
T 1vdy_A 48 KEFSEFILKRLD--NKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLK----GDALNKAVRETA 121 (140)
T ss_dssp HHHHHHHHHHHT--SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTT----SSCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCccc----ccchhHHHHHHH
Confidence 567777776664 34566899999999999984 6666666655 33444444333222100 012234677777
Q ss_pred HHHHHHhcC
Q 015851 137 AFALGLLAV 145 (399)
Q Consensus 137 ~~~L~~l~~ 145 (399)
-.++..|..
T Consensus 122 kEl~~ll~d 130 (140)
T 1vdy_A 122 HETISAIFS 130 (140)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 777776663
No 171
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.32 E-value=5.9e+02 Score=25.39 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC---CChHHHHHHHHHHHHh
Q 015851 242 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---CCSESQREAALLLGQF 318 (399)
Q Consensus 242 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~l 318 (399)
++.+++. ..|.+...+.+.+..+...+..+|.+|+.-.|.+. .++-.++++.+..-|.+ ..+.-...++.+|..+
T Consensus 333 ~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~-~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~ 410 (799)
T 1vsy_4 333 HEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNA-YLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRV 410 (799)
T ss_dssp HHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcc-ceehHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 3444443 45555566678899999999999999998666332 22223445555566655 3334334455565555
Q ss_pred hc---cChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851 319 AA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT 365 (399)
Q Consensus 319 ~~---~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 365 (399)
+. ..+..+.++.. ++..++.-+..+|+.--..+...+..++..-+
T Consensus 411 ~r~lv~~~~yr~hl~~--lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 411 IRFIVMDKLYRVHITN--VLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHHHTTSTTGGGHHHH--HHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhcCcccHHHHHH--HHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 42 11222222221 13333344456788777788888888876554
Done!