BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015853
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 11/164 (6%)

Query: 12  QSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQ 71
           Q  +PPGFRF+PT+EEL+  YL +K +     L +I ++DL K +PW +  K   G   +
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70

Query: 72  SDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHG 131
            +WYFFS +D+KYP            +WKATG DK+I +  +R+G++K LVFY G+AP G
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130

Query: 132 QKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK 175
            K++WIMHEYRL +              +T+ + WV+CRI+KK+
Sbjct: 131 TKTNWIMHEYRLIEPSRR--------NGSTKLDDWVLCRIYKKQ 166


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 11/164 (6%)

Query: 12  QSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQ 71
           Q  +PPGFRF+PT+EEL+  YL +K +     L +I ++DL K +PW +  K   G   +
Sbjct: 17  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 73

Query: 72  SDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHG 131
            +WYFFS +D+KYP            +WKATG DK+I +  +R+G++K LVFY G+AP G
Sbjct: 74  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 133

Query: 132 QKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK 175
            K++WIMHEYRL +              +T+ + WV+CRI+KK+
Sbjct: 134 TKTNWIMHEYRLIEPSRR--------NGSTKLDDWVLCRIYKKQ 169


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 6/168 (3%)

Query: 9   VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGS 68
              +  +PPGFRFHPT++EL+ +YL +K + +++ + +I +VDL K +PWD+ E+   G+
Sbjct: 9   AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA 68

Query: 69  TPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRA 128
               +WYFF+ +D+KYP            +WKATG DK +    R +G++K LVFY G+A
Sbjct: 69  ---REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKA 125

Query: 129 PHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKD 176
           P G K+DWIMHEYRL    +     +     + + + WV+CR++ KK+
Sbjct: 126 PRGVKTDWIMHEYRLA---DAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170


>pdb|2X9Q|A Chain A, Structure Of The Mycobacterium Tuberculosis Protein,
           Rv2275, Demonstrates That  Cyclodipeptide Synthetases
           Are Related To Type I Trna-Synthetases.
 pdb|2X9Q|B Chain B, Structure Of The Mycobacterium Tuberculosis Protein,
           Rv2275, Demonstrates That  Cyclodipeptide Synthetases
           Are Related To Type I Trna-Synthetases
          Length = 289

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 128 APHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVV------CRIFKKKDHHKTL 181
           A H + +D I    R D  PN    +   + +AT +E ++V      C+I   +  H  +
Sbjct: 26  AAHDENADGITGGTRDDSAPNSRFQLGRRIPEATAQEGFLVRPFTQQCQIIHTEGDHAVI 85

Query: 182 G-SPTSSSINGNRM 194
           G SP +S  +  R+
Sbjct: 86  GVSPGNSYFSRQRL 99


>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
          Length = 479

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 217 ESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSP 254
           +SD P  N+ L++  LG  TG    N PF  +    +P
Sbjct: 128 QSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAP 165


>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
           Escherichia Coli
          Length = 479

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 217 ESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSP 254
           +SD P  N+ L++  LG  TG    N PF  +    +P
Sbjct: 128 QSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAP 165


>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
           Coli: The Ternary Complex With Product Bound (L)-Lactate
           And Nadh.
 pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
           Coli: The Binary Complex With Nadph
          Length = 479

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 217 ESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSP 254
           +SD P  N+ L++  LG  TG    N PF  +    +P
Sbjct: 128 QSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAP 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,182,045
Number of Sequences: 62578
Number of extensions: 479287
Number of successful extensions: 565
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 7
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)