Query 015853
Match_columns 399
No_of_seqs 207 out of 1010
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.4E-57 1.2E-61 413.4 15.2 163 9-177 9-171 (174)
2 1ut7_A No apical meristem prot 100.0 2.9E-56 9.8E-61 406.1 15.0 157 10-177 12-168 (171)
3 1ldd_A APC2WHB, anaphase promo 27.4 31 0.0011 27.0 2.2 28 15-43 36-64 (74)
4 1r7l_A Phage protein; structur 21.7 38 0.0013 28.5 1.8 20 302-321 8-28 (110)
5 1cmb_A Met APO-repressor; DNA- 17.8 87 0.003 25.7 3.0 39 22-64 50-88 (104)
6 2k2d_A Ring finger and CHY zin 11.5 50 0.0017 25.9 0.0 17 303-319 13-29 (79)
7 3dz1_A Dihydrodipicolinate syn 10.5 1.1E+02 0.0037 29.3 1.9 20 13-34 107-126 (313)
8 1f6k_A N-acetylneuraminate lya 10.2 1E+02 0.0036 29.0 1.7 21 13-34 104-124 (293)
9 2ehh_A DHDPS, dihydrodipicolin 9.9 1.1E+02 0.0037 28.9 1.7 20 13-33 100-119 (294)
10 2ojp_A DHDPS, dihydrodipicolin 9.9 1.1E+02 0.0037 28.8 1.7 20 13-33 101-120 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.4e-57 Score=413.39 Aligned_cols=163 Identities=45% Similarity=1.001 Sum_probs=137.7
Q ss_pred cCCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCceecCCCCCCCCcchhhhhccCCCCCCeEEEEecCCCCCCCCC
Q 015853 9 VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGT 88 (399)
Q Consensus 9 ~n~~s~LPPGFRF~PTDEELV~~YLr~Kv~g~pl~~~vI~evDVY~~ePWeL~~~~~~G~~~e~eWYFFspr~kKyp~G~ 88 (399)
+.++..|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+|++.+..| +++||||+++++||++|.
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~ 85 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGS 85 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----C
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCC
Confidence 34567999999999999999999999999999999999999999999999999987654 689999999999999999
Q ss_pred cccccCCCceeeeCCCCeEEecCCeEeeEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCccccccccCCCCCCCCCeEE
Q 015853 89 RTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVV 168 (399)
Q Consensus 89 R~nRatg~G~WKatG~dK~I~s~g~~IG~KKtLvFYkgrap~g~KT~WiMhEYrL~~~~~~~~~~s~~~~~~~~~d~~VL 168 (399)
|+||+|++||||+||+++.|.+++++||+||+|+||+|++|++.||+|+||||+|.+...... .........++|||
T Consensus 86 R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~---~~~~~~~~~~~wVl 162 (174)
T 3ulx_A 86 RPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAA---GAKKGSLRLDDWVL 162 (174)
T ss_dssp CSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--------------CCSSEEE
T ss_pred CceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccc---ccccCCCCCCCEEE
Confidence 999999999999999999999889999999999999999999999999999999998754310 00111245789999
Q ss_pred EEEEEeCCC
Q 015853 169 CRIFKKKDH 177 (399)
Q Consensus 169 CRIykK~~~ 177 (399)
||||+|++.
T Consensus 163 Crvf~K~~~ 171 (174)
T 3ulx_A 163 CRLYNKKNE 171 (174)
T ss_dssp EEEEESCC-
T ss_pred EEEEEcCCC
Confidence 999999863
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.9e-56 Score=406.15 Aligned_cols=157 Identities=47% Similarity=1.006 Sum_probs=133.1
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCceecCCCCCCCCcchhhhhccCCCCCCeEEEEecCCCCCCCCCc
Q 015853 10 NGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTR 89 (399)
Q Consensus 10 n~~s~LPPGFRF~PTDEELV~~YLr~Kv~g~pl~~~vI~evDVY~~ePWeL~~~~~~G~~~e~eWYFFspr~kKyp~G~R 89 (399)
..+..|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+|++.+..| +++||||+++++||++|.|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R 88 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSR 88 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCc
Confidence 3567899999999999999999999999999999999999999999999999987544 7899999999999999999
Q ss_pred ccccCCCceeeeCCCCeEEecCCeEeeEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCccccccccCCCCCCCCCeEEE
Q 015853 90 TNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVC 169 (399)
Q Consensus 90 ~nRatg~G~WKatG~dK~I~s~g~~IG~KKtLvFYkgrap~g~KT~WiMhEYrL~~~~~~~~~~s~~~~~~~~~d~~VLC 169 (399)
+||+|++||||+||+++.|+.++.+||+||+|+||+|++|++.||+|+||||+|...... ......++||||
T Consensus 89 ~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~--------~~~~~~~~~VlC 160 (171)
T 1ut7_A 89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR--------NGSTKLDDWVLC 160 (171)
T ss_dssp CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------------CCEEEE
T ss_pred ccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc--------cCcccCCCEEEE
Confidence 999999999999999999998889999999999999999999999999999999987532 012456899999
Q ss_pred EEEEeCCC
Q 015853 170 RIFKKKDH 177 (399)
Q Consensus 170 RIykK~~~ 177 (399)
|||+|+..
T Consensus 161 rv~~k~~~ 168 (171)
T 1ut7_A 161 RIYKKQSS 168 (171)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99999864
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=27.44 E-value=31 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCCCceeCC-ChHHHHHHHHHHHhcCCCCC
Q 015853 15 VPPGFRFHP-TEEELLHYYLRKKVSSEKID 43 (399)
Q Consensus 15 LPPGFRF~P-TDEELV~~YLr~Kv~g~pl~ 43 (399)
.|.|+.|.. |++||-. ||-.||..+.+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 477999998 8899887 799999887653
No 4
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=21.70 E-value=38 Score=28.50 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHhhhcC-Ccc
Q 015853 302 LTSWAALDRLVASQLNG-QTE 321 (399)
Q Consensus 302 ~~dw~~ld~~vas~l~~-~~e 321 (399)
..+=|.+|||+|+++.| +.+
T Consensus 8 ~m~~Re~drLIAeKvmGwkv~ 28 (110)
T 1r7l_A 8 AMKPRDINKLIASKIFGYEIK 28 (110)
T ss_dssp SCCHHHHHHHHHHHTTCCCEE
T ss_pred cCChHHHHHHHHHHhcceeee
Confidence 35668899999999999 544
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=17.81 E-value=87 Score=25.70 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCceecCCCCCCCCcchhhhh
Q 015853 22 HPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64 (399)
Q Consensus 22 ~PTDEELV~~YLr~Kv~g~pl~~~vI~evDVY~~ePWeL~~~~ 64 (399)
|-|..||++.-...-..|+|+|.+ .|+-+..|.+||+..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 678889988777778899999864 788888999998754
No 6
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=11.51 E-value=50 Score=25.94 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=0.0
Q ss_pred CChHHHHHHHHhhhcCC
Q 015853 303 TSWAALDRLVASQLNGQ 319 (399)
Q Consensus 303 ~dw~~ld~~vas~l~~~ 319 (399)
.-|+.||..||+|-..+
T Consensus 13 ~~~~~lD~~ia~~pmP~ 29 (79)
T 2k2d_A 13 RYWRQLDDEVAQTPMPS 29 (79)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHhCCCCH
Confidence 35999999999988764
No 7
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=10.48 E-value=1.1e+02 Score=29.27 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCCCCCceeCCChHHHHHHHHH
Q 015853 13 SQVPPGFRFHPTEEELLHYYLR 34 (399)
Q Consensus 13 s~LPPGFRF~PTDEELV~~YLr 34 (399)
.-+||- |.||+++|+.||-.
T Consensus 107 lv~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 107 MIAPPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp EECCCT--TCCSHHHHHHHHHH
T ss_pred EECCCC--CCCCHHHHHHHHHH
Confidence 457774 56999999998743
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=10.16 E-value=1e+02 Score=28.96 Aligned_cols=21 Identities=33% Similarity=0.535 Sum_probs=15.9
Q ss_pred CCCCCCceeCCChHHHHHHHHH
Q 015853 13 SQVPPGFRFHPTEEELLHYYLR 34 (399)
Q Consensus 13 s~LPPGFRF~PTDEELV~~YLr 34 (399)
.-+||-| |.||+++|+.||-.
T Consensus 104 lv~~P~y-~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 104 SAVTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp EEECCCS-SCCCHHHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHHHH
Confidence 3467654 88999999998743
No 9
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=9.91 E-value=1.1e+02 Score=28.87 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=15.5
Q ss_pred CCCCCCceeCCChHHHHHHHH
Q 015853 13 SQVPPGFRFHPTEEELLHYYL 33 (399)
Q Consensus 13 s~LPPGFRF~PTDEELV~~YL 33 (399)
.-+||- .|.||+++|+.||-
T Consensus 100 lv~~P~-y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 100 LVVVPY-YNKPTQRGLYEHFK 119 (294)
T ss_dssp EEECCC-SSCCCHHHHHHHHH
T ss_pred EECCCC-CCCCCHHHHHHHHH
Confidence 346664 48899999999884
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=9.87 E-value=1.1e+02 Score=28.82 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.5
Q ss_pred CCCCCCceeCCChHHHHHHHH
Q 015853 13 SQVPPGFRFHPTEEELLHYYL 33 (399)
Q Consensus 13 s~LPPGFRF~PTDEELV~~YL 33 (399)
.-+||-| |.||+++|+.||-
T Consensus 101 lv~~P~y-~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 101 LTVTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp EEECCCS-SCCCHHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHHH
Confidence 3467754 8899999999874
Done!