Query 015854
Match_columns 399
No_of_seqs 286 out of 1745
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:31:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2719 Metalloprotease [Gener 100.0 1.1E-79 2.4E-84 599.8 45.8 388 3-396 6-400 (428)
2 PRK03001 M48 family peptidase; 100.0 1E-37 2.2E-42 300.4 29.7 225 151-393 2-233 (283)
3 PRK03982 heat shock protein Ht 100.0 1.5E-36 3.3E-41 292.9 28.9 229 150-392 2-237 (288)
4 PRK01265 heat shock protein Ht 100.0 1.1E-35 2.4E-40 288.1 30.9 196 188-390 50-252 (324)
5 PRK03072 heat shock protein Ht 100.0 5.9E-33 1.3E-37 267.3 30.0 200 184-396 35-241 (288)
6 PRK02391 heat shock protein Ht 100.0 7.9E-32 1.7E-36 260.0 29.9 194 186-389 43-241 (296)
7 PRK01345 heat shock protein Ht 100.0 3.2E-31 7E-36 258.1 30.5 194 185-391 33-232 (317)
8 PRK02870 heat shock protein Ht 100.0 3.7E-31 7.9E-36 258.0 30.1 192 188-393 79-284 (336)
9 PRK04897 heat shock protein Ht 100.0 4E-31 8.7E-36 255.9 27.9 195 188-392 49-257 (298)
10 PRK05457 heat shock protein Ht 100.0 1.4E-29 3.1E-34 243.1 30.4 187 191-390 46-245 (284)
11 PF01435 Peptidase_M48: Peptid 99.9 4.4E-28 9.5E-33 225.4 4.6 184 192-391 6-202 (226)
12 COG0501 HtpX Zn-dependent prot 99.9 9.9E-23 2.1E-27 197.9 28.1 188 187-389 61-258 (302)
13 COG4783 Putative Zn-dependent 99.7 8E-16 1.7E-20 152.6 17.0 159 207-390 60-234 (484)
14 PF05569 Peptidase_M56: BlaR1 99.6 2.6E-13 5.7E-18 131.9 20.2 141 207-391 131-275 (299)
15 COG4784 Putative Zn-dependent 99.4 5.6E-12 1.2E-16 119.8 14.0 147 213-388 60-217 (479)
16 KOG2661 Peptidase family M48 [ 99.4 8.7E-12 1.9E-16 118.0 14.0 160 197-387 192-365 (424)
17 COG4219 MecR1 Antirepressor re 99.0 9.1E-09 2E-13 98.0 16.2 126 216-385 135-263 (337)
18 PF04228 Zn_peptidase: Putativ 97.5 0.001 2.2E-08 64.4 11.2 74 220-293 100-185 (292)
19 PF06114 DUF955: Domain of unk 97.3 0.0043 9.2E-08 50.9 11.0 35 259-298 28-62 (122)
20 PRK04351 hypothetical protein; 96.9 0.0033 7.1E-08 54.8 7.4 71 214-289 1-72 (149)
21 PF04298 Zn_peptidase_2: Putat 96.8 0.23 4.9E-06 46.0 18.9 86 200-294 17-105 (222)
22 COG1451 Predicted metal-depend 96.6 0.0054 1.2E-07 57.2 6.9 72 217-298 123-195 (223)
23 PF01863 DUF45: Protein of unk 96.5 0.0056 1.2E-07 55.9 6.1 71 217-297 112-183 (205)
24 smart00731 SprT SprT homologue 94.6 0.072 1.6E-06 46.2 5.6 68 217-292 1-73 (146)
25 PF13699 DUF4157: Domain of un 94.6 0.058 1.3E-06 41.8 4.5 62 225-292 9-75 (79)
26 PF10026 DUF2268: Predicted Zn 94.5 0.12 2.7E-06 47.0 7.1 76 218-295 4-82 (195)
27 PF10263 SprT-like: SprT-like 94.3 0.19 4.2E-06 43.7 7.7 32 261-293 44-75 (157)
28 PF13203 DUF2201_N: Putative m 93.7 0.11 2.5E-06 50.2 5.4 40 259-299 42-81 (292)
29 PF04450 BSP: Peptidase of pla 93.0 0.25 5.4E-06 45.4 6.3 47 247-294 61-112 (205)
30 COG3091 SprT Zn-dependent meta 92.6 0.25 5.4E-06 42.7 5.2 68 216-290 4-73 (156)
31 PF12388 Peptidase_M57: Dual-a 92.4 0.23 5E-06 45.6 5.2 30 258-290 116-145 (211)
32 PF02031 Peptidase_M7: Strepto 90.2 0.87 1.9E-05 38.3 5.9 38 248-290 52-89 (132)
33 PRK04860 hypothetical protein; 89.8 0.95 2.1E-05 39.9 6.3 34 258-292 44-77 (160)
34 PF12725 DUF3810: Protein of u 88.8 1.9 4.1E-05 42.4 8.2 18 274-291 192-209 (318)
35 COG4900 Predicted metallopepti 88.3 1.4 2.9E-05 36.1 5.6 71 217-290 7-92 (133)
36 COG2856 Predicted Zn peptidase 85.9 1.4 3E-05 40.7 5.1 29 260-293 59-87 (213)
37 PF08325 WLM: WLM domain; Int 85.4 2.1 4.6E-05 38.7 5.9 69 221-296 27-100 (186)
38 cd04268 ZnMc_MMP_like Zinc-dep 84.3 0.76 1.6E-05 40.1 2.5 31 259-290 72-106 (165)
39 PRK09672 phage exclusion prote 83.8 0.92 2E-05 43.7 3.0 21 275-295 162-182 (305)
40 COG2738 Predicted Zn-dependent 83.8 31 0.00067 31.4 12.3 85 205-298 25-112 (226)
41 COG2321 Predicted metalloprote 81.6 3.9 8.4E-05 39.0 6.1 70 223-292 100-181 (295)
42 PF13485 Peptidase_MA_2: Pepti 80.0 2.8 6.1E-05 34.1 4.3 36 257-296 8-43 (128)
43 cd04279 ZnMc_MMP_like_1 Zinc-d 79.6 1.2 2.5E-05 38.9 1.9 16 275-290 101-116 (156)
44 PF00413 Peptidase_M10: Matrix 79.5 0.8 1.7E-05 39.4 0.8 32 259-290 85-117 (154)
45 cd04269 ZnMc_adamalysin_II_lik 78.5 5 0.00011 36.1 5.8 41 247-290 102-143 (194)
46 cd06455 M3A_TOP Peptidase M3 T 78.2 3.6 7.9E-05 42.7 5.4 50 243-294 213-279 (472)
47 COG3864 Uncharacterized protei 78.2 2.2 4.7E-05 41.4 3.3 38 259-297 51-88 (396)
48 TIGR00181 pepF oligoendopeptid 77.8 1.9 4.2E-05 46.0 3.3 47 243-295 348-395 (591)
49 PF15061 DUF4538: Domain of un 76.0 4.2 9E-05 29.4 3.5 41 186-234 9-49 (58)
50 cd06459 M3B_Oligoendopeptidase 75.6 2.3 4.9E-05 43.2 3.0 49 243-295 191-239 (427)
51 cd04270 ZnMc_TACE_like Zinc-de 75.2 1.9 4E-05 40.8 2.1 18 274-291 163-180 (244)
52 cd06258 Peptidase_M3_like The 75.1 5 0.00011 39.9 5.2 49 245-295 111-171 (365)
53 cd04277 ZnMc_serralysin_like Z 74.7 5.8 0.00013 35.5 5.1 32 259-290 93-125 (186)
54 TIGR02289 M3_not_pepF oligoend 74.4 1.9 4.1E-05 45.7 2.1 74 217-296 272-355 (549)
55 COG3590 PepO Predicted metallo 74.1 0.89 1.9E-05 47.4 -0.4 43 247-291 449-500 (654)
56 PF01432 Peptidase_M3: Peptida 72.6 4.2 9.1E-05 41.9 4.1 56 235-292 186-256 (458)
57 PF14247 DUF4344: Domain of un 71.7 12 0.00026 34.8 6.5 43 247-291 47-105 (220)
58 PF13688 Reprolysin_5: Metallo 71.5 2 4.2E-05 38.8 1.2 17 274-290 138-154 (196)
59 COG1164 Oligoendopeptidase F [ 71.4 2.4 5.1E-05 45.5 2.0 48 246-297 352-399 (598)
60 PF13582 Reprolysin_3: Metallo 70.6 2.2 4.7E-05 35.3 1.2 11 280-290 109-119 (124)
61 PF09768 Peptidase_M76: Peptid 70.5 9.2 0.0002 34.2 5.2 67 216-292 15-85 (173)
62 COG3824 Predicted Zn-dependent 70.4 3.3 7.2E-05 34.4 2.2 30 260-290 85-121 (136)
63 COG1054 Predicted sulfurtransf 70.3 8.8 0.00019 37.2 5.3 43 207-255 9-52 (308)
64 PF14891 Peptidase_M91: Effect 70.2 14 0.00031 32.8 6.5 17 275-291 100-116 (174)
65 PF05572 Peptidase_M43: Pregna 70.2 2.3 5E-05 37.2 1.3 61 236-297 19-89 (154)
66 KOG2290 Rhomboid family protei 69.8 18 0.00039 37.0 7.5 48 66-131 544-591 (652)
67 cd00203 ZnMc Zinc-dependent me 69.3 2.6 5.7E-05 36.6 1.5 16 275-290 93-108 (167)
68 TIGR03793 TOMM_pelo TOMM prope 67.9 26 0.00056 26.9 6.5 55 215-283 15-76 (77)
69 PF13574 Reprolysin_2: Metallo 67.5 2.7 5.9E-05 37.4 1.2 13 278-290 111-123 (173)
70 cd04278 ZnMc_MMP Zinc-dependen 67.2 2.9 6.2E-05 36.4 1.3 33 258-290 84-119 (157)
71 cd04272 ZnMc_salivary_gland_MP 67.1 4.4 9.4E-05 37.5 2.6 39 248-290 119-157 (220)
72 COG4324 Predicted aminopeptida 65.8 5.6 0.00012 37.8 2.9 36 265-300 182-222 (376)
73 KOG1047 Bifunctional leukotrie 65.3 10 0.00023 39.6 5.0 47 235-292 255-302 (613)
74 PF10463 Peptidase_U49: Peptid 65.0 4.2 9.1E-05 37.4 1.9 21 276-296 99-119 (206)
75 cd04267 ZnMc_ADAM_like Zinc-de 63.7 2.8 6E-05 37.7 0.5 16 275-290 130-145 (192)
76 PF08014 DUF1704: Domain of un 63.1 12 0.00027 37.2 5.0 68 213-292 108-180 (349)
77 TIGR02290 M3_fam_3 oligoendope 63.1 4.4 9.5E-05 43.3 2.0 44 245-294 346-391 (587)
78 PF01447 Peptidase_M4: Thermol 63.1 6.9 0.00015 34.1 2.9 40 247-290 108-147 (150)
79 PRK01415 hypothetical protein; 62.7 17 0.00036 34.5 5.6 43 207-255 9-52 (247)
80 cd06460 M32_Taq Peptidase fami 62.2 13 0.00028 37.7 5.0 71 213-294 103-175 (396)
81 PF01431 Peptidase_M13: Peptid 61.5 6.3 0.00014 35.8 2.5 37 258-294 7-52 (206)
82 PF01421 Reprolysin: Reprolysi 61.2 6.2 0.00013 35.7 2.3 16 274-289 127-142 (199)
83 TIGR02414 pepN_proteo aminopep 60.1 16 0.00034 41.0 5.7 18 276-293 281-298 (863)
84 COG2274 SunT ABC-type bacterio 58.8 1.3E+02 0.0028 33.2 12.2 58 115-174 231-288 (709)
85 cd04271 ZnMc_ADAM_fungal Zinc- 58.7 3.5 7.6E-05 38.5 0.3 11 280-290 147-157 (228)
86 PF13583 Reprolysin_4: Metallo 58.3 4.7 0.0001 37.0 1.1 14 276-290 136-149 (206)
87 TIGR02421 QEGLA conserved hypo 58.2 16 0.00034 36.7 4.8 64 213-287 133-197 (366)
88 PRK14015 pepN aminopeptidase N 57.6 18 0.00039 40.6 5.6 18 276-293 294-311 (875)
89 COG1377 FlhB Flagellar biosynt 57.3 1.2E+02 0.0026 30.4 10.7 29 140-168 138-166 (363)
90 PF01433 Peptidase_M1: Peptida 56.8 6.2 0.00013 39.4 1.7 69 219-293 234-310 (390)
91 KOG3314 Ku70-binding protein [ 56.3 12 0.00026 33.0 3.1 39 255-296 71-109 (194)
92 PRK08456 flagellar motor prote 56.2 1.9E+02 0.004 27.5 16.5 68 212-294 70-140 (257)
93 PRK05320 rhodanese superfamily 55.8 15 0.00032 35.0 4.0 55 207-269 7-62 (257)
94 PRK06926 flagellar motor prote 55.5 2E+02 0.0043 27.7 18.3 33 269-302 121-153 (271)
95 PF06262 DUF1025: Possibl zinc 55.2 16 0.00035 29.4 3.5 35 259-293 49-88 (97)
96 PRK08990 flagellar motor prote 54.8 2E+02 0.0042 27.4 15.7 92 212-317 69-161 (254)
97 PF11694 DUF3290: Protein of u 54.5 1.5E+02 0.0032 25.9 10.5 89 150-242 15-104 (149)
98 PRK06298 type III secretion sy 53.1 1.9E+02 0.0042 28.9 11.5 26 216-241 231-263 (356)
99 TIGR00328 flhB flagellar biosy 52.4 2.1E+02 0.0045 28.6 11.6 26 216-241 230-262 (347)
100 PRK08124 flagellar motor prote 52.0 2.2E+02 0.0048 27.1 16.1 47 270-317 118-165 (263)
101 PRK09109 motC flagellar motor 51.7 2.1E+02 0.0046 26.9 17.6 47 270-317 117-164 (246)
102 PRK13109 flhB flagellar biosyn 51.1 2.5E+02 0.0054 28.1 12.0 26 216-241 239-271 (358)
103 smart00235 ZnMc Zinc-dependent 51.0 7.4 0.00016 32.9 1.0 12 279-290 87-98 (140)
104 PRK13267 archaemetzincin-like 50.1 51 0.0011 29.6 6.3 13 277-289 124-136 (179)
105 TIGR02412 pepN_strep_liv amino 49.9 23 0.0005 39.6 5.0 66 220-293 229-302 (831)
106 COG1291 MotA Flagellar motor c 49.9 1.1E+02 0.0025 29.2 8.8 89 201-301 60-148 (266)
107 PRK12721 secretion system appa 49.4 1.5E+02 0.0031 29.7 10.0 26 216-241 230-262 (349)
108 PF02163 Peptidase_M50: Peptid 48.7 11 0.00024 33.7 1.8 13 278-290 7-19 (192)
109 PRK05702 flhB flagellar biosyn 47.9 3E+02 0.0066 27.6 12.0 26 216-241 237-269 (359)
110 PRK09108 type III secretion sy 47.3 1.6E+02 0.0035 29.4 10.0 26 216-241 232-264 (353)
111 TIGR01404 FlhB_rel_III type II 46.5 1.9E+02 0.0041 28.8 10.3 26 216-241 229-261 (342)
112 cd04327 ZnMc_MMP_like_3 Zinc-d 46.3 13 0.00028 33.8 1.9 15 276-290 90-104 (198)
113 cd04276 ZnMc_MMP_like_2 Zinc-d 46.2 13 0.00029 33.9 2.0 31 260-290 92-128 (197)
114 cd06456 M3A_DCP_Oligopeptidase 45.2 32 0.00069 35.3 4.7 51 243-295 160-225 (422)
115 PF10023 DUF2265: Predicted am 45.1 13 0.00027 36.9 1.7 44 249-299 140-189 (337)
116 cd05709 S2P-M50 Site-2 proteas 43.7 14 0.00031 32.7 1.8 13 278-290 8-20 (180)
117 PF09973 DUF2208: Predicted me 43.6 2.8E+02 0.0061 26.0 10.4 25 5-29 25-49 (233)
118 cd04273 ZnMc_ADAMTS_like Zinc- 43.5 4.7 0.0001 36.9 -1.5 36 248-290 115-152 (207)
119 cd06161 S2P-M50_SpoIVFB SpoIVF 42.9 15 0.00032 33.7 1.8 14 277-290 37-50 (208)
120 COG0308 PepN Aminopeptidase N 42.2 43 0.00093 37.6 5.5 76 217-295 245-324 (859)
121 cd06163 S2P-M50_PDZ_RseP-like 42.0 14 0.00031 33.2 1.4 13 279-291 10-22 (182)
122 PF06861 BALF1: BALF1 protein; 41.5 23 0.0005 31.4 2.6 26 271-296 125-150 (182)
123 PF15048 OSTbeta: Organic solu 40.8 56 0.0012 27.5 4.6 33 2-34 32-64 (125)
124 KOG3624 M13 family peptidase [ 39.2 22 0.00048 38.8 2.7 44 247-293 480-533 (687)
125 COG3305 Predicted membrane pro 39.2 2.4E+02 0.0052 23.9 8.1 27 106-132 90-116 (152)
126 cd06164 S2P-M50_SpoIVFB_CBS Sp 38.7 19 0.00041 33.6 1.8 14 277-290 52-65 (227)
127 PF15061 DUF4538: Domain of un 38.4 24 0.00053 25.5 1.9 25 37-61 24-48 (58)
128 PF12315 DUF3633: Protein of u 37.6 24 0.00051 32.5 2.1 19 272-291 88-106 (212)
129 COG4823 AbiF Abortive infectio 37.6 22 0.00047 33.7 1.9 14 275-288 89-102 (299)
130 TIGR02411 leuko_A4_hydro leuko 36.7 22 0.00048 38.2 2.1 29 261-292 265-293 (601)
131 TIGR03296 M6dom_TIGR03296 M6 f 36.3 8.6 0.00019 37.2 -0.9 12 279-290 166-177 (286)
132 PRK12772 bifunctional flagella 36.0 5.3E+02 0.011 27.9 12.4 26 216-241 493-525 (609)
133 PRK12468 flhB flagellar biosyn 35.8 4.8E+02 0.01 26.4 12.1 26 216-241 237-269 (386)
134 PF09471 Peptidase_M64: IgA Pe 35.2 20 0.00043 34.4 1.3 16 274-289 212-227 (264)
135 cd06160 S2P-M50_like_2 Unchara 35.1 24 0.00052 31.8 1.8 14 277-290 40-53 (183)
136 cd06159 S2P-M50_PDZ_Arch Uncha 34.6 23 0.0005 33.9 1.7 14 277-290 117-130 (263)
137 KOG3607 Meltrins, fertilins an 34.4 34 0.00073 37.5 3.1 71 217-290 256-335 (716)
138 COG4227 Antirestriction protei 34.2 23 0.00049 33.7 1.5 35 259-295 186-220 (316)
139 PRK09509 fieF ferrous iron eff 34.2 4.3E+02 0.0093 25.4 17.9 16 215-230 210-225 (299)
140 PF11085 YqhR: Conserved membr 32.9 2.4E+02 0.0053 25.1 7.6 70 154-229 72-141 (173)
141 smart00793 AgrB Accessory gene 32.1 2.3E+02 0.005 25.3 7.7 24 204-227 118-141 (184)
142 cd06162 S2P-M50_PDZ_SREBP Ster 32.0 27 0.00059 33.7 1.7 15 277-291 134-148 (277)
143 PF11391 DUF2798: Protein of u 31.5 1.8E+02 0.004 20.8 5.7 35 137-175 19-53 (60)
144 PRK00523 hypothetical protein; 31.4 77 0.0017 24.0 3.6 22 209-234 35-56 (72)
145 COG0772 FtsW Bacterial cell di 30.9 3E+02 0.0066 27.8 9.1 16 274-289 269-284 (381)
146 cd04275 ZnMc_pappalysin_like Z 30.8 8.1 0.00018 36.1 -2.1 36 261-296 119-156 (225)
147 PF02074 Peptidase_M32: Carbox 29.4 1.3E+02 0.0027 31.7 6.2 63 220-291 210-272 (494)
148 cd06457 M3A_MIP Peptidase M3 m 28.9 37 0.00079 35.2 2.2 20 274-294 245-264 (458)
149 PF14715 FixP_N: N-terminal do 28.7 88 0.0019 22.0 3.4 25 178-202 20-44 (51)
150 PF02687 FtsX: FtsX-like perme 28.4 2.9E+02 0.0063 21.6 11.2 46 130-175 28-74 (121)
151 PF02128 Peptidase_M36: Fungal 27.8 18 0.00038 36.4 -0.4 56 240-296 141-203 (378)
152 PRK08156 type III secretion sy 27.3 6.5E+02 0.014 25.3 19.5 26 216-241 225-257 (361)
153 PRK10699 phosphatidylglyceroph 27.2 4.4E+02 0.0095 24.9 8.8 46 167-213 60-105 (244)
154 COG3965 Predicted Co/Zn/Cd cat 27.1 1.4E+02 0.003 28.7 5.3 27 211-240 226-256 (314)
155 COG3930 Uncharacterized protei 27.0 68 0.0015 31.9 3.4 75 207-288 178-256 (434)
156 PRK11767 SpoVR family protein; 27.0 68 0.0015 33.4 3.6 75 218-296 19-130 (498)
157 PF14521 Aspzincin_M35: Lysine 26.5 1.3E+02 0.0029 25.9 4.9 42 248-289 65-107 (148)
158 COG3763 Uncharacterized protei 26.3 2.3E+02 0.005 21.3 5.3 29 9-37 10-38 (71)
159 PHA02564 V virion protein; Pro 26.2 1E+02 0.0023 26.5 4.1 31 206-236 71-101 (141)
160 COG5504 Predicted Zn-dependent 25.9 45 0.00098 31.6 1.9 30 259-291 124-153 (280)
161 PRK00523 hypothetical protein; 25.3 2.4E+02 0.0052 21.4 5.4 30 8-37 10-39 (72)
162 COG3763 Uncharacterized protei 25.2 1.9E+02 0.0041 21.8 4.7 26 205-234 30-55 (71)
163 KOG3658 Tumor necrosis factor- 24.7 22 0.00047 38.2 -0.4 30 259-289 368-403 (764)
164 PF04138 GtrA: GtrA-like prote 24.6 3.6E+02 0.0078 21.4 8.6 48 130-178 42-90 (117)
165 PF13829 DUF4191: Domain of un 24.5 5.8E+02 0.013 23.8 13.0 58 216-286 87-144 (224)
166 cd04283 ZnMc_hatching_enzyme Z 24.4 34 0.00074 30.8 0.9 12 279-290 78-89 (182)
167 PF15639 Tox-MPTase3: Metallop 24.3 64 0.0014 27.2 2.4 58 235-294 50-116 (135)
168 PRK10911 oligopeptidase A; Pro 24.2 48 0.001 36.2 2.1 21 274-295 460-480 (680)
169 PF10460 Peptidase_M30: Peptid 24.1 58 0.0013 32.7 2.5 19 274-292 135-153 (366)
170 COG4972 PilM Tfp pilus assembl 24.0 96 0.0021 30.7 3.9 59 217-291 58-116 (354)
171 cd04281 ZnMc_BMP1_TLD Zinc-dep 24.0 35 0.00076 31.2 0.9 12 279-290 88-99 (200)
172 PF01400 Astacin: Astacin (Pep 24.0 45 0.00097 30.1 1.6 63 217-290 22-91 (191)
173 cd06158 S2P-M50_like_1 Unchara 23.9 47 0.001 29.7 1.7 13 278-290 9-21 (181)
174 COG1176 PotB ABC-type spermidi 23.8 4.8E+02 0.01 25.3 8.6 29 104-132 67-95 (287)
175 COG4149 ModC ABC-type molybdat 23.2 4.4E+02 0.0096 24.5 7.8 118 107-237 7-134 (225)
176 PRK01844 hypothetical protein; 23.0 2.8E+02 0.006 21.1 5.3 29 9-37 10-38 (72)
177 KOG1046 Puromycin-sensitive am 21.9 49 0.0011 37.3 1.7 21 275-295 321-341 (882)
178 PF05548 Peptidase_M11: Gameto 21.9 44 0.00095 32.8 1.1 11 280-290 152-162 (314)
179 PF10256 Erf4: Golgin subfamil 21.8 2.5E+02 0.0055 22.9 5.6 21 34-54 20-40 (118)
180 COG3402 Uncharacterized conser 21.2 5E+02 0.011 22.9 7.3 43 160-202 27-70 (161)
181 PF11990 DUF3487: Protein of u 20.9 5E+02 0.011 21.7 12.2 79 144-234 22-101 (121)
182 TIGR00054 RIP metalloprotease 20.8 47 0.001 33.9 1.2 12 279-290 15-26 (420)
183 PRK12773 flhB flagellar biosyn 20.8 7.9E+02 0.017 26.6 10.0 26 216-241 528-561 (646)
184 PRK01622 OxaA-like protein pre 20.5 7.3E+02 0.016 23.4 9.3 16 219-234 119-134 (256)
185 PRK06719 precorrin-2 dehydroge 20.2 3.4E+02 0.0075 23.5 6.4 73 214-294 78-156 (157)
186 PF12651 RHH_3: Ribbon-helix-h 20.2 98 0.0021 20.9 2.3 21 216-236 10-30 (44)
No 1
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=100.00 E-value=1.1e-79 Score=599.82 Aligned_cols=388 Identities=51% Similarity=0.849 Sum_probs=373.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CChhhcccCCHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHh
Q 015854 3 FPYMEAVVGFMILMYFFETYLDLRQHAALKLPK-LPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTI-LMDSAILLF 80 (399)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~rq~~~~~~~~-~P~~~~~~~~~~~~~k~~~Y~~~~~~~~~~~~~~~~-~~~~~~l~~ 80 (399)
.+|+.+++++++..+.||+||+.||.+++++++ +|+++++.+|+|+++|||+|+++|.++++++...+. ...+..+++
T Consensus 6 ~~~~~~i~~f~i~~~~~~~yl~~Rq~~~~~~~~~~p~el~~~~~~et~~kar~y~~~k~~f~i~~~~~~~~~~~l~~L~~ 85 (428)
T KOG2719|consen 6 MCRKSIILFFSIFLYLFETYLTERQLKVLKRTKLVPKELGGIIDQETFKKARSYERDKSIFSIFNLLLSLVLLLLLELYL 85 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHhhcCCCHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999998775 999999999999999999999999999999999999 899999999
Q ss_pred chHHHHHHhhhhHHHHhccCCccchhHHHHHHHHHHHHHhhccccHHhhhhhhhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 015854 81 RILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAI 160 (399)
Q Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~lPf~~y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~ 160 (399)
|.+|++|..++++..+ ..+++++++|+.+++.+++++++|+++|++|++|++||+||+|.+.|++|.+|+.++++
T Consensus 86 g~~~~lw~lt~~~~~~-----~~~~~~s~vF~~~~s~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~ 160 (428)
T KOG2719|consen 86 GALPFLWKLTGKFLGK-----AGEIWLSLVFLLLLSIYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGV 160 (428)
T ss_pred hHHHHHHHHHHHHhhh-----hhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHH
Confidence 9999999999887765 34899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCchhHHHHHHHHHHHcCCCCCcEEEE
Q 015854 161 VLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240 (399)
Q Consensus 161 ~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~ 240 (399)
+++.|+++++.+++..+|+++.+|+|.+.++++++++.++|.+|+|+|+|++|+|++++++.||++|++.|+|.++++++
T Consensus 161 ~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi 240 (428)
T KOG2719|consen 161 VLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLLLTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVI 240 (428)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcceEEEccCCCceEEEcHhHHh--h-CCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhc
Q 015854 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ--Q-CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRN 317 (399)
Q Consensus 241 d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~--~-l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~ 317 (399)
|+|+||+++|||++|+++.|||+++|||+. . + ++||+.||+|||+|||+++|+.|+.++.++..++.+.+++.+.+
T Consensus 241 ~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~-~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~~~~~ 319 (428)
T KOG2719|consen 241 DGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHL-NNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFGFLYR 319 (428)
T ss_pred ecCCCCCCCCeeeeeccccceEEEehhhhhhhhcc-ccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999983 2 4 79999999999999999999999999999999999999999999
Q ss_pred CchhhhhcCCCC-chhHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCC
Q 015854 318 STDLFRSFGFDT-QPVLIGLI-IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQVINQYLLPT 395 (399)
Q Consensus 318 ~~~l~~~~G~~~-~~~~i~l~-l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~lg~~~~l~~aL~kL~~~n~~~~~p 395 (399)
++++|.++|+.+ +|..+|++ +|..+++|+..+.+++++..||+.||+||++|.++|++++|++||.||..||++.|.|
T Consensus 320 ~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyqAD~fA~klGYg~~L~~AL~KL~~dnlsf~~~ 399 (428)
T KOG2719|consen 320 NPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQADAFAKKLGYGKDLRQALIKLFVDNLSFPVS 399 (428)
T ss_pred CcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhcCCCCC
Confidence 999999999987 78899997 7888899999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 015854 396 M 396 (399)
Q Consensus 396 ~ 396 (399)
|
T Consensus 400 D 400 (428)
T KOG2719|consen 400 D 400 (428)
T ss_pred c
Confidence 6
No 2
>PRK03001 M48 family peptidase; Provisional
Probab=100.00 E-value=1e-37 Score=300.42 Aligned_cols=225 Identities=18% Similarity=0.275 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCc---hhHHHHHHHHH
Q 015854 151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPE---GELREKIEKLA 227 (399)
Q Consensus 151 d~~k~~~l~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~p~~i~plf~~~~pl~~---~~L~~~i~~l~ 227 (399)
|.+|+.++..+++++++.+.+++.. ..+|+++|++.+++.++..+++|.++.|++|+ +|+++ |++++.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la 77 (283)
T PRK03001 2 NWVKTAMLMAAITALFIVIGGMIGG---SQGMLIALLFALGMNFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELA 77 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHH
Confidence 6789999999999998888888774 45588899999999999999999999999997 77776 69999999999
Q ss_pred HHcCCCCCcEEEEeCCCCCCCcceEEEccCCC-ceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHH
Q 015854 228 SSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTL 306 (399)
Q Consensus 228 ~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~-~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~ 306 (399)
++.|+|.|++|++|+ +++|||++|.+++ ++|+++|||++.+ ++||++||+|||+||++++|..+++....+..+
T Consensus 78 ~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~ 152 (283)
T PRK03001 78 QRAGLPMPKVYLINE----DQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISATMAGA 152 (283)
T ss_pred HHcCCCCCeEEEecC----CCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999999999996 5899999998764 5799999999999 999999999999999999999999766533221
Q ss_pred H-HHHHHHHHhcCchhhhhcCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHH
Q 015854 307 L-QFGGYTLVRNSTDLFRSFGFDTQP-VLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLV 383 (399)
Q Consensus 307 ~-~~~l~~~~~~~~~l~~~~G~~~~~-~~i~l~l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~ 383 (399)
+ .+..+.. ++..++.++.+ ..+..+++. ++.++. ..++.+.+||++|++||++|+++ ++|+++++||+
T Consensus 153 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~SR~~E~~AD~~a~~l~~~p~~l~~AL~ 223 (283)
T PRK03001 153 ISALANFAM------FFGGRDENGRPVNPIAGIAVA-ILAPLA--ASLIQMAISRAREFEADRGGARISGDPQALASALD 223 (283)
T ss_pred HHHHHHHHH------HhcCCCccccccchHHHHHHH-HHHHHH--HHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHHH
Confidence 1 1111111 12222221111 112222222 222322 35677999999999999999998 57999999999
Q ss_pred HHHHHhCCCC
Q 015854 384 KLQVINQYLL 393 (399)
Q Consensus 384 kL~~~n~~~~ 393 (399)
|++++|.+.|
T Consensus 224 Kl~~~~~~~p 233 (283)
T PRK03001 224 KIHRYASGIP 233 (283)
T ss_pred HHHhhhccCC
Confidence 9999988754
No 3
>PRK03982 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.5e-36 Score=292.92 Aligned_cols=229 Identities=24% Similarity=0.254 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccC---CchhHHHHHHHH
Q 015854 150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKL 226 (399)
Q Consensus 150 ~d~~k~~~l~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~p~~i~plf~~~~pl---~~~~L~~~i~~l 226 (399)
.|.+|+.++..+++++++.+.+.. .|..||+++|++.+++.++ .+.+|..+.|.+++++|+ ++|++++.++++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~l 77 (288)
T PRK03982 2 MNQLKTGLLMALLTGLLYAIGYLL---GGSIGPIIAILLALIPNLI-SYYYSDKIVLASYNARIVSEEEAPELYRIVERL 77 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHH-HHHHhHHHHHHhcCCEECChhhhHHHHHHHHHH
Confidence 578899988887777776665532 3678888888887777766 777888899999999998 567899999999
Q ss_pred HHHcCCCCCcEEEEeCCCCCCCcceEEEccCC-CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Q 015854 227 ASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLT 305 (399)
Q Consensus 227 ~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~ 305 (399)
|++.|+|.|++|++|+ +++|||++|.++ ++.|+++|||++.+ ++||++||+|||+||++|+|..+++....+..
T Consensus 78 a~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~ 152 (288)
T PRK03982 78 AERANIPKPKVAIVPT----QTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAATLAG 152 (288)
T ss_pred HHHcCCCCCeEEEEeC----CCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999996 479999999866 45677999999999 99999999999999999999999987765422
Q ss_pred HHHHHHHHHHhcCchhhhhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHH
Q 015854 306 LLQFGGYTLVRNSTDLFRSFGFDT--QPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGL 382 (399)
Q Consensus 306 ~~~~~l~~~~~~~~~l~~~~G~~~--~~~~i~l~l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL 382 (399)
.+. ++...+ ....++..+|... .+..++..++. ++.|+. ..++.+++||++|++||++|+++ ++|+++++||
T Consensus 153 ~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~l~~~~~SR~~E~~AD~~A~~~~~~p~~l~~aL 227 (288)
T PRK03982 153 AIM-YLAQWL-SWGLWFGGGGRDDRNGGNPIGSLLLI-ILAPIA--ATLIQFAISRQREFSADEGGARLTGNPLALANAL 227 (288)
T ss_pred HHH-HHHHHH-HHHHHhcccCccccccchHHHHHHHH-HHHHHH--HHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence 211 111111 1112333333321 12334443333 223332 36778999999999999999999 5899999999
Q ss_pred HHHHHHhCCC
Q 015854 383 VKLQVINQYL 392 (399)
Q Consensus 383 ~kL~~~n~~~ 392 (399)
+||++++.+.
T Consensus 228 ~kL~~~~~~~ 237 (288)
T PRK03982 228 QKLEKGVRYI 237 (288)
T ss_pred HHHHhhhccC
Confidence 9999886543
No 4
>PRK01265 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.1e-35 Score=288.10 Aligned_cols=196 Identities=24% Similarity=0.316 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--cCccCC--chhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccC-CCceE
Q 015854 188 FMFVLSLVMMTLYPVLIAPLFN--KFTPLP--EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRI 262 (399)
Q Consensus 188 ~~~~~~l~~~~~~p~~i~plf~--~~~pl~--~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~-~~~~I 262 (399)
+.+++.++.++++|.++.|+++ +++|.+ +|+|++.++++|++.|+|.|++|++|++ .+|||++|.+ ++++|
T Consensus 50 ~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~----~~NAfa~G~~~~~~~I 125 (324)
T PRK01265 50 FVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVP----FPNAFAYGSPIAGKRI 125 (324)
T ss_pred HHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCC----CCCeEEeccCCCCCEE
Confidence 4455678889999999999996 899987 7899999999999999999999999974 6999999985 57999
Q ss_pred EEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHH
Q 015854 263 VLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHT 342 (399)
Q Consensus 263 vl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i 342 (399)
+++|||++.+ ++||++||+|||+||++|+|+.+++..+.+..++.+...... +..++..+|.++.....++.++..+
T Consensus 126 vvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~ll 202 (324)
T PRK01265 126 AITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSLF--WGGMFGGGGGGRGNNGGLLFLIGIA 202 (324)
T ss_pred EEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccccCCCccchHHHHHHHH
Confidence 9999999999 999999999999999999999999877766554433322211 1223333333221111123334444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhC
Q 015854 343 VIPIQHLVSFGLNLVSRSFEFQADAFAKKL--GYASALRAGLVKLQVINQ 390 (399)
Q Consensus 343 ~~p~~~~~~~l~~~~sR~~E~~AD~~A~~l--g~~~~l~~aL~kL~~~n~ 390 (399)
+.++..+.+++.+++||.+||+||++|++. |+|++|++||+|++....
T Consensus 203 ~~~~~~i~~~l~~aiSR~rEy~AD~~aa~~~tg~p~~LasAL~KL~~~~~ 252 (324)
T PRK01265 203 LMAVSFVFNLLVLSINRMREAYADVNSALTVPGGAENLQTALAKITLSMD 252 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHhccc
Confidence 556666778999999999999999999995 899999999999998654
No 5
>PRK03072 heat shock protein HtpX; Provisional
Probab=100.00 E-value=5.9e-33 Score=267.32 Aligned_cols=200 Identities=19% Similarity=0.208 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--ccCccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCC-Cc
Q 015854 184 YLWAFMFVLSLVMMTLYPVLIAPLF--NKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NK 260 (399)
Q Consensus 184 ~~~~~~~~~~l~~~~~~p~~i~plf--~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~-~~ 260 (399)
+..++.+++.++..+..|..+.... ...+|.++|+|++.++++|+++|+|.|++|++|+ +.+|||++|..+ +.
T Consensus 35 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la~~~g~p~p~vyv~~~----~~~NAFa~G~~~~~~ 110 (288)
T PRK03072 35 IAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQAPAMYRIVRELSTAARQPMPRLYISPT----AAPNAFATGRNPRNA 110 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHHHHcCCCCCCEEEecC----CCCceEEecCCCCCc
Confidence 3344555566677777777666554 3467788999999999999999999999999996 479999999643 44
Q ss_pred eEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCC---chhHHHHH
Q 015854 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDT---QPVLIGLI 337 (399)
Q Consensus 261 ~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~---~~~~i~l~ 337 (399)
.|++++++++.+ ++||++||+|||+||++|+|+.++...+.+...+.+. ... ..++..+|.+. .+..+++.
T Consensus 111 ~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i~~l--~~~---~~~~~~~~~~~~~~~~~~~~~~ 184 (288)
T PRK03072 111 AVCCTEGILQIL-NERELRGVLGHELSHVYNRDILISSVAGALASVITYL--ANM---AMFAGMFGGRRDNDGPNPLALL 184 (288)
T ss_pred EEEecHHHHHhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--HHH---HHHHHHhccccccccchHHHHH
Confidence 689999999999 9999999999999999999999998776554332211 110 01222333321 12233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCCCCCCC
Q 015854 338 IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQVINQYLLPTM 396 (399)
Q Consensus 338 l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n~~~~~p~ 396 (399)
++. ++.|+ ...++.+.+||++||+||++|+++ |+|++|++||+||+++|.+++.|+
T Consensus 185 ~~~-l~~~~--~~~~~~~~~SR~rE~~AD~~A~~l~~~p~~La~AL~KL~~~~~~~~~~~ 241 (288)
T PRK03072 185 LVS-LLGPI--AATVIQLAISRSREYQADESGAELTGDPLALASALRKISGGVQAAPLPP 241 (288)
T ss_pred HHH-HHHHH--HHHHHHHHHHhHHHHHHhHHHHHHhCCHHHHHHHHHHHHhccccCCCCc
Confidence 332 23333 246778999999999999999998 679999999999999988777654
No 6
>PRK02391 heat shock protein HtpX; Provisional
Probab=100.00 E-value=7.9e-32 Score=259.98 Aligned_cols=194 Identities=23% Similarity=0.159 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--ccCccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCC-CceE
Q 015854 186 WAFMFVLSLVMMTLYPVLIAPLF--NKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRI 262 (399)
Q Consensus 186 ~~~~~~~~l~~~~~~p~~i~plf--~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~-~~~I 262 (399)
.++.+++.++..+..|..+.... .+.+|.++|++++.++++|++.|+|.|++|++|+ +++|||++|.++ ++.|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~----~~~NAfa~G~~~~~~~V 118 (296)
T PRK02391 43 VVIAGGFLLAQYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPKPRVAVADS----DVPNAFATGRSPKNAVV 118 (296)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeC----CCCceEEecCCCCCcEE
Confidence 34445556667777777766544 4678889999999999999999999999999995 589999999864 5568
Q ss_pred EEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHH
Q 015854 263 VLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHT 342 (399)
Q Consensus 263 vl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i 342 (399)
++++||++.+ ++||++||+|||+||++++|+.++.+.+.+..+..+. .... .++..++..+.....+..++..+
T Consensus 119 ~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l-~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 192 (296)
T PRK02391 119 CVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLI-VRWG----FYFGGFGGRGGGGGGGGILVVIL 192 (296)
T ss_pred EecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHH----HHhccccCCCCcccchHHHHHHH
Confidence 8999999999 9999999999999999999999998776554433211 1110 01111211111100111111112
Q ss_pred HHH-HHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHh
Q 015854 343 VIP-IQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQVIN 389 (399)
Q Consensus 343 ~~p-~~~~~~~l~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n 389 (399)
+.+ ...+..++.+.+||++||+||++|+++ |+|+++++||.|++.++
T Consensus 193 ~~~~~~~~~~~l~~~~SR~rE~~AD~~Aa~ltg~p~~LasAL~KL~~~~ 241 (296)
T PRK02391 193 VSLVVWAISFLLIRALSRYREFAADRGAAIITGRPSALASALMKISGRM 241 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHccc
Confidence 222 122346778999999999999999998 68999999999999863
No 7
>PRK01345 heat shock protein HtpX; Provisional
Probab=100.00 E-value=3.2e-31 Score=258.06 Aligned_cols=194 Identities=20% Similarity=0.281 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc--CccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCC-Cce
Q 015854 185 LWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKR 261 (399)
Q Consensus 185 ~~~~~~~~~l~~~~~~p~~i~plf~~--~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~-~~~ 261 (399)
..++.+++.++..+..|.++.+.++. .+|.++|+|++.++++|+++|+|.|++|++|+ +++|||++|.++ +++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~----~~~NAFa~G~~~~~~~ 108 (317)
T PRK01345 33 ALVIAAGMNLFSYWNSDKMVLRMYGAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDN----PQPNAFATGRNPENAA 108 (317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHcCCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcC----CCcceEEecCCCCCeE
Confidence 34555667788888899999998875 78888999999999999999999999999996 589999999854 668
Q ss_pred EEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHH-HHHHHHHhcCchhhhhcCCCCch-hHHHHHHH
Q 015854 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQ-FGGYTLVRNSTDLFRSFGFDTQP-VLIGLIIF 339 (399)
Q Consensus 262 Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~G~~~~~-~~i~l~l~ 339 (399)
|++++||++.+ ++||++||+|||+||++++|..++.+...+...+. +..+..+.+... . ....+ ..++.+ +
T Consensus 109 V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~--~---~~~~~~~~i~~~-~ 181 (317)
T PRK01345 109 VAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFGGNR--E---NNNGPLGLVGTL-A 181 (317)
T ss_pred EEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c---cccchHHHHHHH-H
Confidence 99999999999 99999999999999999999999887654422211 111111222100 0 00112 122222 2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCC
Q 015854 340 QHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQVINQY 391 (399)
Q Consensus 340 ~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n~~ 391 (399)
..++.|+. ..++.+.+||++|++||++|+++ ++|++|+++|+|+++.+..
T Consensus 182 ~~~~~~~~--~~l~~~~~SR~rE~~AD~~A~~ltg~p~~L~~AL~KL~~~~~~ 232 (317)
T PRK01345 182 AMIVAPLA--AMLVQMAISRTREYAADRRGAEICGNPLWLASALGKIERGAHG 232 (317)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc
Confidence 22344543 24667899999999999999998 7899999999999987543
No 8
>PRK02870 heat shock protein HtpX; Provisional
Probab=100.00 E-value=3.7e-31 Score=258.02 Aligned_cols=192 Identities=19% Similarity=0.273 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------ccCccCCchhHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCCcceEEEccC-C
Q 015854 188 FMFVLSLVMMTLYPVLIAPLF-------NKFTPLPEGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGFF-K 258 (399)
Q Consensus 188 ~~~~~~l~~~~~~p~~i~plf-------~~~~pl~~~~L~~~i~~l~~~~g~~-~~~i~v~d~s~~s~~~NA~~~G~~-~ 258 (399)
+.++..++.++..+.++.... ++++|.++++|++.++++|+++|+| .|++|++|+ +++|||++|.+ +
T Consensus 79 ~~~~~~~~~y~~~~~~~l~~~~a~~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~----~~~NAFA~G~~~~ 154 (336)
T PRK02870 79 VAVISILVTFQNFDKIMLSGTEYKEITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDA----PYMNAFASGYSEK 154 (336)
T ss_pred HHHHHHHHHHHhhHHHHHHHcCCEEcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcC----CCCceEEecCCCC
Confidence 334445556666666554432 4566777899999999999999999 799999997 47999999986 4
Q ss_pred CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCC---c-hhHH
Q 015854 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDT---Q-PVLI 334 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~---~-~~~i 334 (399)
+++|++++||++.+ ++||++||+|||+||++|+|+.+++....+..++.+. ... .++..+|... . +..+
T Consensus 155 ~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~-~~~-----~~~~~~g~~~~~~~~~~~~ 227 (336)
T PRK02870 155 SAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIV-ADF-----LFYSFMGNRRNSGANRARM 227 (336)
T ss_pred CcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-HHH-----HHHHHhcCCcccccchhHH
Confidence 78999999999999 9999999999999999999998887665543322111 111 1111223211 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCCCC
Q 015854 335 GLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQVINQYLL 393 (399)
Q Consensus 335 ~l~l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n~~~~ 393 (399)
+++++..+ .|+ +..++.+++||.+||+||++|+++ |+|++|++||+|++.+|.+.+
T Consensus 228 ~~l~l~~~-~~~--~~~ll~~~iSR~rEy~AD~~Aa~ltg~p~aLasAL~KL~~~~~~~~ 284 (336)
T PRK02870 228 IILILRYV-LPI--LTVLLMLFLSRTREYMADAGAVELMRDNEPMARALQKISNDHAQND 284 (336)
T ss_pred HHHHHHHH-HHH--HHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHhccccCc
Confidence 33232222 232 235788999999999999999999 679999999999999998866
No 9
>PRK04897 heat shock protein HtpX; Provisional
Probab=100.00 E-value=4e-31 Score=255.95 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCccC---CchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCC-CceEE
Q 015854 188 FMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIV 263 (399)
Q Consensus 188 ~~~~~~l~~~~~~p~~i~plf~~~~pl---~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~-~~~Iv 263 (399)
+.+++.++..+..|. +....++.+|+ ++|+|++.++++|+++|+|.|++|++|+ +.+|||++|.++ ++.|+
T Consensus 49 ~~~~~~~~~~~~~~~-~~~~~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~----~~~NAfa~G~~~~~~~v~ 123 (298)
T PRK04897 49 IGVIYALIMIFQSTN-VVMSMNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDD----PSPNAFATGSSPKNAAVA 123 (298)
T ss_pred HHHHHHHHHHHhhHH-HHHHhCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecC----CCCceEEeccCCCCcEEE
Confidence 333444455555554 44455667777 5789999999999999999999999996 479999999875 45699
Q ss_pred EcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCC----CCchh--HHH-H
Q 015854 264 LYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGF----DTQPV--LIG-L 336 (399)
Q Consensus 264 l~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~----~~~~~--~i~-l 336 (399)
++++|++.+ ++||++||+|||+||++|+|+.+++....+..++.+ +...... ..++..++. .+.+. .+. .
T Consensus 124 vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~~~~-l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (298)
T PRK04897 124 VTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAVALASAITL-LSDIAGR-MMWWGGGSRRRDDDRDGGGLQIILL 200 (298)
T ss_pred eehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHH-HHHhcccccccccccccchhhHHHH
Confidence 999999999 999999999999999999999999877654433321 2111111 011111111 01111 111 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCCC
Q 015854 337 --IIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQVINQYL 392 (399)
Q Consensus 337 --~l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n~~~ 392 (399)
.++..++.|+. ..++.+++||++||+||++|+++ ++|+++++||+||+++|...
T Consensus 201 ~~~l~~~i~~~~~--~~ll~~~~SR~rE~~AD~~A~~lt~~p~~La~AL~KL~~~~~~~ 257 (298)
T PRK04897 201 IVSLLLLILAPLA--ATLIQLAISRQREYLADASSVELTRNPQGLISALEKISNSQPMK 257 (298)
T ss_pred HHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccc
Confidence 11222334443 35678899999999999999999 56999999999999987643
No 10
>PRK05457 heat shock protein HtpX; Provisional
Probab=99.97 E-value=1.4e-29 Score=243.14 Aligned_cols=187 Identities=21% Similarity=0.201 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCccC----Cch--hHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCc-eEE
Q 015854 191 VLSLVMMTLYPVLIAPLFNKFTPL----PEG--ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNK-RIV 263 (399)
Q Consensus 191 ~~~l~~~~~~p~~i~plf~~~~pl----~~~--~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~-~Iv 263 (399)
+..++..+..|.++....+ .+++ +++ ++++.++++|++.|+|.|++|++|+ +++|||++|.++++ .|+
T Consensus 46 ~~~~~~~~~~~~i~~~~~~-a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~----~~~NAfa~G~~~~~~~V~ 120 (284)
T PRK05457 46 GGSFISLLMSKWMAKRSTG-AEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYHS----PEINAFATGASKNNSLVA 120 (284)
T ss_pred HHHHHHHHHHHHHHHHhcC-CeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeC----CCceEEEecCCCCCeEEE
Confidence 3445666666766554432 3333 333 4999999999999999999999996 58999999986544 577
Q ss_pred EcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHH-HHHHHHH--HHHHHhcCchhhhhcCCCCch---hHHHHH
Q 015854 264 LYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV-LTLLQFG--GYTLVRNSTDLFRSFGFDTQP---VLIGLI 337 (399)
Q Consensus 264 l~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~-~~~~~~~--l~~~~~~~~~l~~~~G~~~~~---~~i~l~ 337 (399)
++++|++.+ |+||++||+|||+||++++|+.++.+...+ ..++.+. ++..+... ... +-.+.+ ..++..
T Consensus 121 vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~ 195 (284)
T PRK05457 121 VSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDR--FVS--GNEEGNGIGYFIVSI 195 (284)
T ss_pred eehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc--cCcccccHHHHHHHH
Confidence 999999999 999999999999999999999997655433 2222221 11111110 000 101111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Q 015854 338 IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQVINQ 390 (399)
Q Consensus 338 l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~lg~~~~l~~aL~kL~~~n~ 390 (399)
++.. ....+.+++.+++||++||+||++|+++++|+++++||+|++++|.
T Consensus 196 l~~~---~~~~~~~ll~~~~SR~rEy~AD~~Aa~ltgp~~L~~AL~KL~~~~~ 245 (284)
T PRK05457 196 VLEI---VFGILASIIVMWFSRHREFRADAGGAKLAGREKMIAALQRLKTSYE 245 (284)
T ss_pred HHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCc
Confidence 1111 2234457888999999999999999999889999999999999887
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.94 E-value=4.4e-28 Score=225.41 Aligned_cols=184 Identities=39% Similarity=0.592 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhhhccCccCCchhHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHH
Q 015854 192 LSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSL--KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI 269 (399)
Q Consensus 192 ~~l~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~--g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll 269 (399)
.+.++..+++.++.+++++++|.++++|++.+++++++. +.|.+++++++++ ..|||++|.+++++|+|+++++
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~----~~NA~~~g~~~~~~I~v~~~ll 81 (226)
T PF01435_consen 6 VSLLLAFIGPPLIAPLFNKFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDSP----SPNAFATGGGPRKRIVVTSGLL 81 (226)
T ss_dssp TTSTTGHHCCCCHCCHCTC--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--S----SEEEEEETTTC--EEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCC----CCcEEEEccCCCcEEEEeChhh
Confidence 344556677778899999999999999999999999999 8888899999974 5999999998889999999999
Q ss_pred hhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 015854 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHL 349 (399)
Q Consensus 270 ~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i~~p~~~~ 349 (399)
+.+ ++||++||||||+||++++|..+++....+..++.+.+...+.........+++... .+. + +...
T Consensus 82 ~~~-~~~el~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~---~~~~ 149 (226)
T PF01435_consen 82 ESL-SEDELAAVLAHELGHIKHRHILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDI---LGI-----L---IAFL 149 (226)
T ss_dssp HHS-SHHHHHHHHHHHHHHHHTTHCCCCCCHHH-HHHHHHHHHT-----HHHHHHHH---------------------HH
T ss_pred hcc-cHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc---chh-----h---HHHH
Confidence 999 999999999999999999999988666555444333333222222222222211100 000 0 0123
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHcCChHHH-----------HHHHHHHHHHhCC
Q 015854 350 VSFGLNLVSRSFEFQADAFAKKLGYASAL-----------RAGLVKLQVINQY 391 (399)
Q Consensus 350 ~~~l~~~~sR~~E~~AD~~A~~lg~~~~l-----------~~aL~kL~~~n~~ 391 (399)
...+.+.+||++|++||++|+++++.+++ .+++.++...+..
T Consensus 150 ~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~~a~~~~~~~~~~l~~l~~~~~~ 202 (226)
T PF01435_consen 150 FQLLTNAFSRRQEYEADRYAARLGGDPALLARALYKPAAAISALEKLAEANSM 202 (226)
T ss_dssp STT------HHHHHHHHHHHHHH------HHHTTS-TTHHHHHHHHHT-----
T ss_pred HHHhhcchhHHHHHHHHHHHHHhcCCcHHHHHhCCCHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999999665554 7888888773333
No 12
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.9e-23 Score=197.88 Aligned_cols=188 Identities=26% Similarity=0.332 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CccCC--c----hhHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCCcceEEEccC
Q 015854 187 AFMFVLSLVMMTLYPVLIAPLFNK--FTPLP--E----GELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGFF 257 (399)
Q Consensus 187 ~~~~~~~l~~~~~~p~~i~plf~~--~~pl~--~----~~L~~~i~~l~~~~g~~-~~~i~v~d~s~~s~~~NA~~~G~~ 257 (399)
.+.+...++..+..+....-..+. ..+.. . ..+..++++++++.|.+ .+++++.++ +.+|||++|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~~----~~~NAFa~g~~ 136 (302)
T COG0501 61 LLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILET----PQPNAFALGGG 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhceeecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEecC----CCccceecCCC
Confidence 333444555566666555544432 22211 2 33445899999999998 789999994 68999999974
Q ss_pred -CCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHH
Q 015854 258 -KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGL 336 (399)
Q Consensus 258 -~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l 336 (399)
++++|++++||++.+ |+||++||+|||+||++++|..++...........+.+......... .+ + ..+
T Consensus 137 ~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~----~~~ 205 (302)
T COG0501 137 PKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATLALAAGL----LG--E----AAL 205 (302)
T ss_pred CCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHh----hc--c----hHH
Confidence 679999999999999 99999999999999999999999665544433322222222221100 00 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 015854 337 IIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQVIN 389 (399)
Q Consensus 337 ~l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~lg~~~~l~~aL~kL~~~n 389 (399)
................+.+.+||.+|++||++|+++.+++.++++|.|+...+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~~~~l~~aL~kl~~~~ 258 (302)
T COG0501 206 ALLLLLLLLALFLATLLVLAFSRKREYEADRFAAKLTGPEKLASALQKLARLS 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhchhhccChHHHHHHHHHHHhhh
Confidence 11111112223445688999999999999999999977999999999999854
No 13
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.69 E-value=8e-16 Score=152.59 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=110.5
Q ss_pred hhccCccCCchhHHHHHHHHHHH----cCCCCC--cEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHH
Q 015854 207 LFNKFTPLPEGELREKIEKLASS----LKFPLK--KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVA 280 (399)
Q Consensus 207 lf~~~~pl~~~~L~~~i~~l~~~----~g~~~~--~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~A 280 (399)
+-+....++|+++.+.|+++..+ .|.+.. +++++++ +..|||++ ++++|+|+.||+-..+||+|+.+
T Consensus 60 lr~~~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d----~~iNAFA~---~Gg~v~vntGLll~ae~esElag 132 (484)
T COG4783 60 LRGSVPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVND----DSINAFAT---PGGYVVVNTGLLLTAENESELAG 132 (484)
T ss_pred hccCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC----Cccchhhc---CCceEEEehHHHHhcCCHHHHHH
Confidence 33445667899999999876654 455532 6777875 58999999 57899999999999999999999
Q ss_pred HHHHHhhhhhhchHHHHHHHHHHHH---H--HHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 015854 281 VIAHELGHWKLNHTMYSFIAVQVLT---L--LQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLN 355 (399)
Q Consensus 281 VlAHElGH~~~~h~~~~~~~~~~~~---~--~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i~~p~~~~~~~l~~ 355 (399)
|||||+||+..+|..+.+-...-.. . +...+...+.+ - ....+++.. ... ....-..
T Consensus 133 ViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~---------~--~ag~a~iag--~~a-----~~~~g~L 194 (484)
T COG4783 133 VIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAG---------A--DAGMAGIAG--ALA-----GAAQGQL 194 (484)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhC---------c--cccHHHHHH--HHH-----Hhhhhhh
Confidence 9999999999999999987643211 1 11111111111 0 111122110 000 0112357
Q ss_pred HHhHHHHHHHHHHHHHc----CC-hHHHHHHHHHHHHHhC
Q 015854 356 LVSRSFEFQADAFAKKL----GY-ASALRAGLVKLQVINQ 390 (399)
Q Consensus 356 ~~sR~~E~~AD~~A~~l----g~-~~~l~~aL~kL~~~n~ 390 (399)
.+||..|.|||+++... |+ |.+|.+.++|+.....
T Consensus 195 ~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~ 234 (484)
T COG4783 195 NFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQLR 234 (484)
T ss_pred hcchhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh
Confidence 79999999999999986 65 8999999999997543
No 14
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.56 E-value=2.6e-13 Score=131.94 Aligned_cols=141 Identities=23% Similarity=0.341 Sum_probs=113.3
Q ss_pred hhccCccCCchhHHHHHHHHHHHcCCCCC-cEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHH
Q 015854 207 LFNKFTPLPEGELREKIEKLASSLKFPLK-KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHE 285 (399)
Q Consensus 207 lf~~~~pl~~~~L~~~i~~l~~~~g~~~~-~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHE 285 (399)
+..+.++.+|++..+.+++++++.|++.+ ++++.+ ....++++|+. +++|++++++.+.+ +++|+++|++||
T Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~-----~i~sP~~~G~~-~p~I~lP~~~~~~~-~~~el~~il~HE 203 (299)
T PF05569_consen 131 LLRKARPVEDEELQALLEECKEELGIKRPIRIRVSS-----GISSPFVFGFL-RPVIVLPESLLEDL-SEEELRAILLHE 203 (299)
T ss_pred HHHhccccCcHHHHHHHHHHHHHhCCCCceEEEEcC-----CCCCCeeecCc-ceEEEecCcccccc-CHHHHHHHHHHH
Confidence 56778899999999999999999998743 444444 35678899985 68999999999999 999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015854 286 LGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQA 365 (399)
Q Consensus 286 lGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i~~p~~~~~~~l~~~~sR~~E~~A 365 (399)
+.|+|++|.+.+++...+..+. .+.|+. ......+.+.+|+.|
T Consensus 204 l~Hikr~D~~~~~l~~l~~~l~----------------------------------WfnP~~---~~~~~~~~~~~E~~c 246 (299)
T PF05569_consen 204 LAHIKRRDLLWKLLAELLCALH----------------------------------WFNPLV---WLLRRRIRRDRELAC 246 (299)
T ss_pred HHHHHCCChHHHHHHHHHHHHH----------------------------------HhhHHH---HHHHHHHHHHHHHhh
Confidence 9999999999998765433210 112332 245688889999999
Q ss_pred HHHHHHc---CChHHHHHHHHHHHHHhCC
Q 015854 366 DAFAKKL---GYASALRAGLVKLQVINQY 391 (399)
Q Consensus 366 D~~A~~l---g~~~~l~~aL~kL~~~n~~ 391 (399)
|+.+.+. ++..+.+++|.++.+.+..
T Consensus 247 D~~vl~~l~~~~~~~Y~~~Ll~~~~~~~~ 275 (299)
T PF05569_consen 247 DEAVLRNLGKEERKAYAETLLKVAKRSQQ 275 (299)
T ss_pred hHHHHHhcCchhHHHHHHHHHHHHHhhcC
Confidence 9999998 3467899999999988766
No 15
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.39 E-value=5.6e-12 Score=119.79 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=103.6
Q ss_pred cCCchhHHHHHHHHHHHcCCC---C---CcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHh
Q 015854 213 PLPEGELREKIEKLASSLKFP---L---KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHEL 286 (399)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~---~---~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHEl 286 (399)
...|+.+.+.+.++..++-.. + .+|-++|+ +..|||+. +++.++|+.||+....+..|++|||+||+
T Consensus 60 eY~D~Kler~Vari~g~lt~~S~~p~q~YriTilnS----P~INAFAL---PGGYlYitRGLlAland~sEvAAVl~HEm 132 (479)
T COG4784 60 EYRDPKLERMVARIVGALTAVSENPQQTYRITILNS----PNINAFAL---PGGYLYITRGLLALANDSSEVAAVLAHEM 132 (479)
T ss_pred ccCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecC----CCcccccc---CCceEEEehhHHHHcCCHHHHHHHHHhhh
Confidence 356788888888877765321 1 26778884 79999998 78999999999999878899999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015854 287 GHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQAD 366 (399)
Q Consensus 287 GH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i~~p~~~~~~~l~~~~sR~~E~~AD 366 (399)
||+..+|...+.-......+.. .+. .+-.|.+. ..-.++ +.+ ..-...|||.+|.|||
T Consensus 133 gHVtAnHgi~rQ~~e~a~~ia~-----rvv-----a~vl~~~~-agk~A~-----~rG------klrla~fsRnqELqAD 190 (479)
T COG4784 133 GHVTANHGIQRQQREAAEVIAS-----RVV-----AEVLGSDA-AGKQAL-----IRG------KLRLAQFSRNQELQAD 190 (479)
T ss_pred hheecchhHHHHHHHHHHHHHH-----HHH-----HHHhCCcc-hhhHHH-----hhh------hHHHhhhccchhhhhh
Confidence 9999999988765443332211 111 01112110 000111 111 2345889999999999
Q ss_pred HHHHHc----CC-hHHHHHHHHHHHHH
Q 015854 367 AFAKKL----GY-ASALRAGLVKLQVI 388 (399)
Q Consensus 367 ~~A~~l----g~-~~~l~~aL~kL~~~ 388 (399)
..++++ || |.++++.|..|+..
T Consensus 191 ~iG~~~lgeAGYDP~A~~rfl~sm~ay 217 (479)
T COG4784 191 AIGIKMLGEAGYDPYAAARFLQSMAAY 217 (479)
T ss_pred hhhHHHHHhcCCChHHHHHHHHHHHhh
Confidence 999997 54 89999999999764
No 16
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.7e-12 Score=118.03 Aligned_cols=160 Identities=20% Similarity=0.294 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhhccCccCCchh---HHHHHHHHHHHcC----CCC--CcEEEEeCCCCCCCcceEEEccCCCceEEEcHh
Q 015854 197 MTLYPVLIAPLFNKFTPLPEGE---LREKIEKLASSLK----FPL--KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDT 267 (399)
Q Consensus 197 ~~~~p~~i~plf~~~~pl~~~~---L~~~i~~l~~~~g----~~~--~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~ 267 (399)
..-|-.+-.---++.-|-.+|+ +++.+.++.+..+ +.- -+|.|+|+ +.+|||+. ++++|++++|
T Consensus 192 e~~ye~im~eyq~~mLp~~hp~sl~V~~vlk~iIea~~~~~slsgIkWeihVVnd----PipNAFvL---PgGKvfVFtg 264 (424)
T KOG2661|consen 192 ELEYEAIMEEYQNDMLPEKHPRSLAVKEVLKHIIEANKDVPSLSGIKWEIHVVND----PIPNAFVL---PGGKVFVFTG 264 (424)
T ss_pred HHHHHHHHHHhcCccCCcCCchhhHHHHHHHHHHHHhccCCcccCceeEEEEecC----CCCceeec---cCCeEEEEec
Confidence 3334433333335566665554 3333333333333 321 27888886 57999999 6899999999
Q ss_pred HHhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHHHHHHH
Q 015854 268 LIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQ 347 (399)
Q Consensus 268 Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i~~p~~ 347 (399)
+++.++++||+++|||||+||...+|..-++.......++.+.++.+.... .+.- .+
T Consensus 265 iLn~ck~ddglAtvLgHE~aHaVarH~AEki~k~~~~siLgLvlyt~~~a~-----------~~n~--------~L---- 321 (424)
T KOG2661|consen 265 ILNSCKDDDGLATVLGHEIAHAVARHAAEKIGKVHLLSILGLVLYTMIWAI-----------CPND--------KL---- 321 (424)
T ss_pred hhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc-----------cchH--------HH----
Confidence 999998999999999999999999999988766555444333333222110 0100 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHc-----CChHHHHHHHHHHHH
Q 015854 348 HLVSFGLNLVSRSFEFQADAFAKKL-----GYASALRAGLVKLQV 387 (399)
Q Consensus 348 ~~~~~l~~~~sR~~E~~AD~~A~~l-----g~~~~l~~aL~kL~~ 387 (399)
.-.++..-+||++|.|||-.+.-+ -+|.+-....+||+.
T Consensus 322 -l~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvwErM~~ 365 (424)
T KOG2661|consen 322 -LEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVWERMEF 365 (424)
T ss_pred -HHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 012456789999999999998776 368888888888875
No 17
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=9.1e-09 Score=98.03 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHH
Q 015854 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
+.|.++.++++.++...+ ++.+ ..|+ ...+-.++|.+ ..+|++++...+++ ++||++-|++||++|.|+||..
T Consensus 135 e~d~~~~~~~~~~~~~~k--~i~i-r~s~--~i~~P~v~gl~-kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i 207 (337)
T COG4219 135 EVDKRKIVTILKNHQYKK--HILI-RKSK--AIDGPMVFGLV-KPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAI 207 (337)
T ss_pred cccHHHHHHHHHHhhhcc--CeeE-eecc--cCCCceeeccC-cceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHH
Confidence 355667777776666443 4433 3232 46777889986 68999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCh
Q 015854 296 YSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYA 375 (399)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~G~~~~~~~i~l~l~~~i~~p~~~~~~~l~~~~sR~~E~~AD~~A~~lg~~ 375 (399)
.+.+...+..+. .+.|+- .+....+--.+|.+||+.+...-++
T Consensus 208 ~n~i~~~~~~l~----------------------------------WfNP~v---~l~~~~~~~D~E~aCDa~vL~~~~~ 250 (337)
T COG4219 208 INLIVVVLGVLF----------------------------------WFNPLV---HLGKRKIRIDQEIACDAAVLARINP 250 (337)
T ss_pred HHHHHHHHhHHh----------------------------------hcChHH---HHHHHHHHhhHHHHhhHHHHhccCh
Confidence 987543322110 111221 2334666778999999999987432
Q ss_pred ---HHHHHHHHHH
Q 015854 376 ---SALRAGLVKL 385 (399)
Q Consensus 376 ---~~l~~aL~kL 385 (399)
.+.++++.|+
T Consensus 251 ~err~YaEsil~~ 263 (337)
T COG4219 251 EERRTYAESILKL 263 (337)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554
No 18
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=97.49 E-value=0.001 Score=64.35 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCC--CCcEEEEeCCCCCCCcceEE-Ec---cCCCceEEEcHhHHhhCC------ChHHHHHHHHHHhh
Q 015854 220 REKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYM-YG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELG 287 (399)
Q Consensus 220 ~~~i~~l~~~~g~~--~~~i~v~d~s~~s~~~NA~~-~G---~~~~~~Ivl~~~Ll~~l~------~~~El~AVlAHElG 287 (399)
.+..++..++.|.+ .|++.+.+++.+|..-+|-. +| ++..++|++..+.++.++ .+--...|||||.|
T Consensus 100 e~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEyG 179 (292)
T PF04228_consen 100 EDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEYG 179 (292)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 33444555667765 57888887766654433321 12 235789999877665541 12235679999999
Q ss_pred hhhhch
Q 015854 288 HWKLNH 293 (399)
Q Consensus 288 H~~~~h 293 (399)
|...+.
T Consensus 180 HHVQ~l 185 (292)
T PF04228_consen 180 HHVQNL 185 (292)
T ss_pred HHHHHH
Confidence 975543
No 19
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=97.25 E-value=0.0043 Score=50.91 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=28.0
Q ss_pred CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHH
Q 015854 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSF 298 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~ 298 (399)
.+.|+++.. + ++++-..++|||+||+..+|.....
T Consensus 28 ~~~I~in~~----~-~~~~~~f~laHELgH~~~~~~~~~~ 62 (122)
T PF06114_consen 28 NPIIFINSN----L-SPERQRFTLAHELGHILLHHGDETF 62 (122)
T ss_dssp TTEEEEESS----S--HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCEEEECCC----C-CHHHHHHHHHHHHHHHHhhhccccc
Confidence 788889887 4 8999999999999999888876553
No 20
>PRK04351 hypothetical protein; Provisional
Probab=96.92 E-value=0.0033 Score=54.82 Aligned_cols=71 Identities=21% Similarity=0.450 Sum_probs=51.3
Q ss_pred CCchhHHHHHHHHHHHc-CCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhh
Q 015854 214 LPEGELREKIEKLASSL-KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (399)
Q Consensus 214 l~~~~L~~~i~~l~~~~-g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~ 289 (399)
+.+.||.+.+++++.+. +.|.+.-...+..-++ ..-++.. +...|.++..+++.. +++++..||+||+.|+
T Consensus 1 ~~~~~l~~l~~~~s~~~F~~~f~~~v~~n~Rlrt-tgG~~~l---~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 1 MTNQELQRLVEEISLEYFGKPFRHQAYFNKRLRT-TGGRYLL---KDHHIEFNPKMLEEY-GLEELIGIIKHELCHY 72 (149)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEeccchh-hhheeec---CCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHH
Confidence 35789999999999864 6665533334432221 2223322 568899999999988 9999999999999997
No 21
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=96.83 E-value=0.23 Score=45.97 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=55.7
Q ss_pred HHHHHHhhhccCccCCc--h-hHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChH
Q 015854 200 YPVLIAPLFNKFTPLPE--G-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDE 276 (399)
Q Consensus 200 ~p~~i~plf~~~~pl~~--~-~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~ 276 (399)
....+..-|+|+...++ + .=.+.-+.+.++.|+..-+|..+++. -++|.|. ..|.|-++++-.+. +.=
T Consensus 17 aq~~vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~-LtDHYdP------~~k~vrLS~~vy~~--~Si 87 (222)
T PF04298_consen 17 AQWWVKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPGE-LTDHYDP------RNKVVRLSEDVYNG--RSI 87 (222)
T ss_pred HHHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCCC-CCCCcCC------CCCEEEeCCccCCC--CCH
Confidence 33455667777766553 1 12344557788899875566666542 2456543 67888899986643 233
Q ss_pred HHHHHHHHHhhhhhhchH
Q 015854 277 EIVAVIAHELGHWKLNHT 294 (399)
Q Consensus 277 El~AVlAHElGH~~~~h~ 294 (399)
--.||-|||.||..+++.
T Consensus 88 aAvaVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 88 AAVAVAAHEVGHAIQHAE 105 (222)
T ss_pred HHHHHHHHHHhHHHhccc
Confidence 456789999999988774
No 22
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=96.62 E-value=0.0054 Score=57.16 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccC-CCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHH
Q 015854 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
.++...++..+++.|.+...+.+-+.+++ .|.+ ..+.|.+..- +... +++.+..|++||++|.+..+.-
T Consensus 123 ~~l~~~~~~~~~~l~~~~~~~~ik~~k~~--------WGScs~~~~i~~~~~-l~~~-p~~~i~YVvvHELaHLke~nHs 192 (223)
T COG1451 123 EILEIRLKEYAKKLGVPPRAIKLKNMKRR--------WGSCSKAGEIRFNWR-LVMA-PEEVIDYVVVHELAHLKEKNHS 192 (223)
T ss_pred HHHHHHHHHHHHHhCCCccceeeeeccce--------eeeecCCCcEEeehh-hhcC-CHHHHHHHHHHHHHHHhhhhcc
Confidence 45666777888889999888887765543 4432 3455555555 4457 9999999999999999988865
Q ss_pred HHH
Q 015854 296 YSF 298 (399)
Q Consensus 296 ~~~ 298 (399)
+.+
T Consensus 193 ~~F 195 (223)
T COG1451 193 KRF 195 (223)
T ss_pred HHH
Confidence 554
No 23
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=96.49 E-value=0.0056 Score=55.94 Aligned_cols=71 Identities=27% Similarity=0.296 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEcc-CCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHH
Q 015854 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF-FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~-~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
..+.+.++..+++.|++.+++.+-+... ..|. ..++.|.++..|+. + +++-++.|+.||++|..+.+.-
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~i~ir~~ks--------rWGsc~~~~~I~ln~~L~~-~-P~~~idYVvvHEL~Hl~~~nHs 181 (205)
T PF01863_consen 112 EYLPERLKKYAKKLGLPPPKIKIRDMKS--------RWGSCSSKGNITLNWRLVM-A-PPEVIDYVVVHELCHLRHPNHS 181 (205)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeehhh--------ccccCCCCCcEEeeccccc-C-CccHHHHHHHHHHHHhccCCCC
Confidence 4566777888999999999998877532 2553 35788999998875 6 8999999999999999876654
Q ss_pred HH
Q 015854 296 YS 297 (399)
Q Consensus 296 ~~ 297 (399)
+.
T Consensus 182 ~~ 183 (205)
T PF01863_consen 182 KR 183 (205)
T ss_pred HH
Confidence 44
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=94.64 E-value=0.072 Score=46.24 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHH-cC--CCCCcEEEEeCCCCCCCcceEEEcc--CCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhh
Q 015854 217 GELREKIEKLASS-LK--FPLKKLFVVDGSTRSSHSNAYMYGF--FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 217 ~~L~~~i~~l~~~-~g--~~~~~i~v~d~s~~s~~~NA~~~G~--~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~ 291 (399)
++|.+.++++.++ .+ ++.+.|. .+...++ ..|. .+...|.++..+++.. +++++..||.|||.|...
T Consensus 1 ~~L~~~~~~~n~~~F~~~l~~~~i~-w~~r~~~------~~G~~~~~~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 1 QELTQRLEDASLRVFGRKLPHPKVV-WNKRLRK------TGGRCLLKSAEIRLNPKLLTEN-GRDRLRETLLHELCHAAL 72 (146)
T ss_pred ChHHHHHHHHHHHHHCCCCCCCEEE-Eehhhhh------hhHHhhcCCCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHH
Confidence 3567777776633 33 4444443 3322111 1232 1378899999999988 899999999999999876
Q ss_pred c
Q 015854 292 N 292 (399)
Q Consensus 292 ~ 292 (399)
.
T Consensus 73 ~ 73 (146)
T smart00731 73 Y 73 (146)
T ss_pred H
Confidence 3
No 25
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=94.62 E-value=0.058 Score=41.79 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHcCCCCCcEEEEeC-----CCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhc
Q 015854 225 KLASSLKFPLKKLFVVDG-----STRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (399)
Q Consensus 225 ~l~~~~g~~~~~i~v~d~-----s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~ 292 (399)
++....|.+..+|.+-.+ ..++....||+.| ..|++..+-.+ . +..+=.+++|||++|+...
T Consensus 9 ~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G----~~I~f~~g~~~-~-~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 9 RLERAFGADLSDVRVHTGPAASRAAAALGARAFTVG----NDIYFAPGKYN-P-DSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred HHHHHhCCCccceEEEeCCchhhhhhccCCeEEEEC----CEEEEcCCCcC-C-CCCCcchhHhHHHHHHHhh
Confidence 445577888888877655 2234566777764 78998665432 2 4556678999999998754
No 26
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=94.49 E-value=0.12 Score=47.01 Aligned_cols=76 Identities=25% Similarity=0.158 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEE--eCCCCCCCcc-eEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchH
Q 015854 218 ELREKIEKLASSLKFPLKKLFVV--DGSTRSSHSN-AYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (399)
Q Consensus 218 ~L~~~i~~l~~~~g~~~~~i~v~--d~s~~s~~~N-A~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~ 294 (399)
.+.+.++++.+...-+.-+|++. |...+....+ .+..|.+...+|.++- +-+.. +.+++.+++|||+-|..+.+.
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~-~~~~l~~~iaHE~hH~~r~~~ 81 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDY-SLEELPALIAHEYHHNCRYEQ 81 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcc-cHHHHHHHHHHHHHHHHHHhc
Confidence 35566666666665553355544 3322211111 2223333456777775 44455 889999999999999976543
Q ss_pred H
Q 015854 295 M 295 (399)
Q Consensus 295 ~ 295 (399)
.
T Consensus 82 ~ 82 (195)
T PF10026_consen 82 I 82 (195)
T ss_pred c
Confidence 3
No 27
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=94.32 E-value=0.19 Score=43.74 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.8
Q ss_pred eEEEcHhHHhhCCChHHHHHHHHHHhhhhhhch
Q 015854 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (399)
Q Consensus 261 ~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h 293 (399)
.|.++..+++.. +++|+..+|.|||.|....+
T Consensus 44 ~I~ls~~~~~~~-~~~~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 44 EIRLSPKLLDRN-PEEELIDTLLHEMAHAAAYV 75 (157)
T ss_pred EEEECHHHHHhh-HHHHHHHHHHHHHHHHHhhh
Confidence 899999999987 89999999999999987643
No 28
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=93.68 E-value=0.11 Score=50.23 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=36.8
Q ss_pred CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHHHH
Q 015854 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFI 299 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~~~ 299 (399)
+.+|+++...+..+ +.+|+.+|++||+-|+..+|..+.--
T Consensus 42 g~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~ 81 (292)
T PF13203_consen 42 GRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG 81 (292)
T ss_pred CcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence 45999999999999 99999999999999999999987765
No 29
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=93.03 E-value=0.25 Score=45.43 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=40.3
Q ss_pred CCcceEEEccCCCceEEEcHhHHhhCCCh-----HHHHHHHHHHhhhhhhchH
Q 015854 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKND-----EEIVAVIAHELGHWKLNHT 294 (399)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~-----~El~AVlAHElGH~~~~h~ 294 (399)
...-|+..|-+..+.|.++...+++. ++ +|+.+||-||+.|.-+.+.
T Consensus 61 ~~gVA~t~gd~~~~~I~~S~~~i~~~-~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 61 MDGVAYTSGDDDHKEIHFSARYIAKY-PADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred CCeeEEEecCCCccEEEEeHHHHhhc-ccccchHHHHHHHHHHHHHHHhhcCC
Confidence 57788899866789999999999988 53 5999999999999988665
No 30
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=92.59 E-value=0.25 Score=42.69 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHHcCC--CCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhh
Q 015854 216 EGELREKIEKLASSLKF--PLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~g~--~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~ 290 (399)
+.+|++.+++.....+- +.+++..-..- .+..-||.- ...|-++..+++.. .+|.+..|+.||++|+.
T Consensus 4 ~~~L~~~~~~as~~~~r~~~~p~~~~n~Rg--~taG~ayL~----~~~I~lNP~ll~en-~~~f~~~vV~HELaHl~ 73 (156)
T COG3091 4 NRKLQQCVEQASLKFFRKFFRPKASYNQRG--RTAGGAYLL----KSEIRLNPKLLEEN-GEDFIEQVVPHELAHLH 73 (156)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceehhhhh--hhcchhhcc----ccccccCHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence 35677888887776643 34555543311 122333332 34899999999998 99999999999999974
No 31
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=92.44 E-value=0.23 Score=45.61 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=24.3
Q ss_pred CCceEEEcHhHHhhCCChHHHHHHHHHHhhhhh
Q 015854 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 258 ~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~ 290 (399)
|.+.|.|+ + ++.. +.+..+.|++|||||..
T Consensus 116 P~~~I~I~-~-~~~~-~~~~~~hvi~HEiGH~I 145 (211)
T PF12388_consen 116 PYKFIQIY-G-LSNY-SVNVIEHVITHEIGHCI 145 (211)
T ss_pred CCceEEEE-e-cCCC-chhHHHHHHHHHhhhhc
Confidence 46788884 3 4667 88999999999999965
No 32
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=90.21 E-value=0.87 Score=38.33 Aligned_cols=38 Identities=34% Similarity=0.229 Sum_probs=22.6
Q ss_pred CcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhh
Q 015854 248 HSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 248 ~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~ 290 (399)
.+-|...|.| +.+|++...--+.. +. .. |.+||+||+.
T Consensus 52 ~sya~~~g~G-~G~I~l~~~~~qgy-~~--~R-IaaHE~GHiL 89 (132)
T PF02031_consen 52 GSYASTDGLG-SGYIFLDYQQNQGY-NS--TR-IAAHELGHIL 89 (132)
T ss_dssp --EEEE-SSS--EEEEEEHHHHHHS--H--HH-HHHHHHHHHH
T ss_pred CcccccCCCC-cEEEEechHHhhCC-cc--ce-eeeehhcccc
Confidence 3446666665 67898876544444 33 22 9999999963
No 33
>PRK04860 hypothetical protein; Provisional
Probab=89.80 E-value=0.95 Score=39.94 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhc
Q 015854 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (399)
Q Consensus 258 ~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~ 292 (399)
....|-++..+++.- +++++..||.||++|+.-.
T Consensus 44 ~~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~~~ 77 (160)
T PRK04860 44 QSNEIRLNPVLLLEN-QQAFIDEVVPHELAHLLVY 77 (160)
T ss_pred hcCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHHHH
Confidence 467799999999988 9999999999999998543
No 34
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=88.79 E-value=1.9 Score=42.42 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHhhhhhh
Q 015854 274 NDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 274 ~~~El~AVlAHElGH~~~ 291 (399)
++-++-+.+|||+||.+.
T Consensus 192 p~~~~P~T~~HElAHq~G 209 (318)
T PF12725_consen 192 PPYSLPFTICHELAHQLG 209 (318)
T ss_pred CcccccHHHHHHHHHHhC
Confidence 666889999999999753
No 35
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=88.33 E-value=1.4 Score=36.13 Aligned_cols=71 Identities=27% Similarity=0.292 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHcCCC---CCcEEEEeCCCCCCCcceEE--Ec----------cCCCceEEEcHhHHhhCCChHHHHHH
Q 015854 217 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYM--YG----------FFKNKRIVLYDTLIQQCKNDEEIVAV 281 (399)
Q Consensus 217 ~~L~~~i~~l~~~~g~~---~~~i~v~d~s~~s~~~NA~~--~G----------~~~~~~Ivl~~~Ll~~l~~~~El~AV 281 (399)
++..+.++++..+.|.. ..+++++-+.. ++.-|++ .| ..+.--|-+-..=.+.+ +.+|-.-|
T Consensus 7 ~dve~~~~~~V~~lgLdyi~~~rv~vVys~g--S~~~A~ARIwg~pki~~e~lglnP~YviEl~sekF~rL-s~~ekvKv 83 (133)
T COG4900 7 ADVEADIKNAVVRLGLDYIFQVRVVVVYSPG--SHSKAVARIWGIPKIFQEVLGLNPVYVIELLSEKFKRL-SCAEKVKV 83 (133)
T ss_pred ccHHHHHHHHHHHhCcceeeeeeEEEEECCC--CcceehhhhhcccHHHHHHhCCCCeeeeeeehhhcCCC-ChHHHHHH
Confidence 45567777788888876 35777775332 3444443 33 33334444445556678 89999999
Q ss_pred HHHHhhhhh
Q 015854 282 IAHELGHWK 290 (399)
Q Consensus 282 lAHElGH~~ 290 (399)
++||+.|+-
T Consensus 84 iiHEllHIP 92 (133)
T COG4900 84 IIHELLHIP 92 (133)
T ss_pred HHHHHhcCc
Confidence 999999985
No 36
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=85.89 E-value=1.4 Score=40.74 Aligned_cols=29 Identities=31% Similarity=0.291 Sum_probs=22.9
Q ss_pred ceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhch
Q 015854 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (399)
Q Consensus 260 ~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h 293 (399)
+-|++... . +++.-..++|||+||+..+-
T Consensus 59 ~~I~iN~n----~-~~~r~rFtlAHELGH~llH~ 87 (213)
T COG2856 59 PVIYINAN----N-SLERKRFTLAHELGHALLHT 87 (213)
T ss_pred ceEEEeCC----C-CHHHHHHHHHHHHhHHHhcc
Confidence 46777765 4 78889999999999987543
No 37
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=85.36 E-value=2.1 Score=38.72 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEcc--CCCceEEE--cH-hHHhhCCChHHHHHHHHHHhhhhhhchHH
Q 015854 221 EKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF--FKNKRIVL--YD-TLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 221 ~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~--~~~~~Ivl--~~-~Ll~~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
+.|..++++.++.+..+..+.-. ..+ ..|. .++..|.| -+ .. ..+-+-++|..|+.||++|..++..-
T Consensus 27 ~~v~pIM~~~~~~V~~L~E~~P~----~~~--llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t~lHELaH~~~~~H~ 99 (186)
T PF08325_consen 27 ADVKPIMRKHGWRVGSLEEFYPN----GER--LLGLNVNKGEKICLRLRTPDD-GGFLPYETILGTMLHELAHNVHGPHD 99 (186)
T ss_pred HHHHHHHHHcCcccCeeeccCCC----CCC--CcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHHHHHHHHhcccCCcc
Confidence 34555666778877666555421 111 6665 34555554 22 22 33327899999999999999966543
Q ss_pred H
Q 015854 296 Y 296 (399)
Q Consensus 296 ~ 296 (399)
.
T Consensus 100 ~ 100 (186)
T PF08325_consen 100 D 100 (186)
T ss_pred H
Confidence 3
No 38
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=84.28 E-value=0.76 Score=40.11 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=20.6
Q ss_pred CceEEEcHhHHh----hCCChHHHHHHHHHHhhhhh
Q 015854 259 NKRIVLYDTLIQ----QCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 259 ~~~Ivl~~~Ll~----~l~~~~El~AVlAHElGH~~ 290 (399)
++.|.+.+.-+. .. +.++..++++||+||..
T Consensus 72 ~g~i~~~~~~~~~~~~~~-~~~~~~~~~~HEiGHaL 106 (165)
T cd04268 72 TGEILLARVYLYSSFVEY-SGARLRNTAEHELGHAL 106 (165)
T ss_pred CccEEeeEEEEchhHHHH-HHHHHHHHHHHHHHHHh
Confidence 456665554332 12 35689999999999964
No 39
>PRK09672 phage exclusion protein Lit; Provisional
Probab=83.84 E-value=0.92 Score=43.71 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhhhhhhchHH
Q 015854 275 DEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 275 ~~El~AVlAHElGH~~~~h~~ 295 (399)
-.-+.-|+.||++|+..+|..
T Consensus 162 l~A~a~i~~HEiaHv~~~h~~ 182 (305)
T PRK09672 162 LCALAWILLHEIAHVEFQHSS 182 (305)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 346788999999999888763
No 40
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=83.79 E-value=31 Score=31.37 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=46.0
Q ss_pred HhhhccCccCCch--hH-HHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHH
Q 015854 205 APLFNKFTPLPEG--EL-REKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAV 281 (399)
Q Consensus 205 ~plf~~~~pl~~~--~L-~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AV 281 (399)
..-++|+..+..+ -- .+.-+.+.++.|+..-+|-.+.+. -|+|.. |++|.+-+++.-... +.-.=.||
T Consensus 25 ks~y~KySkV~~s~g~TGaevAr~iLd~nGl~dV~Ve~v~G~-LTDHYD------P~~kvvrLSe~~y~g--~Sia~~aV 95 (226)
T COG2738 25 KSTYKKYSKVRASSGLTGAEVARMILDENGLYDVPVEEVPGT-LTDHYD------PRRKVVRLSEANYYG--PSIAAIAV 95 (226)
T ss_pred HHHHHHHhhccCcCCCcHHHHHHHHHhhcCCccceeeeecCC-cccccC------hhhheeeccccccCC--ccHHHHHH
Confidence 3446666665432 12 223345667778754344444431 123321 244555577765443 33445689
Q ss_pred HHHHhhhhhhchHHHHH
Q 015854 282 IAHELGHWKLNHTMYSF 298 (399)
Q Consensus 282 lAHElGH~~~~h~~~~~ 298 (399)
-|||.||..+.+.-...
T Consensus 96 AAHEVGHAiQd~~~Y~~ 112 (226)
T COG2738 96 AAHEVGHAIQDQEDYAF 112 (226)
T ss_pred HHHHhhHHHhhhcccHH
Confidence 99999998876654443
No 41
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=81.65 E-value=3.9 Score=38.97 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHcCC--CCCcEEEEeCCCCCCCcceE-EEc---cCCCceEEEcHhHHhhCC------ChHHHHHHHHHHhhhhh
Q 015854 223 IEKLASSLKF--PLKKLFVVDGSTRSSHSNAY-MYG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELGHWK 290 (399)
Q Consensus 223 i~~l~~~~g~--~~~~i~v~d~s~~s~~~NA~-~~G---~~~~~~Ivl~~~Ll~~l~------~~~El~AVlAHElGH~~ 290 (399)
...+-++.|- ..|++.....+.+|..-.|- ++| ++..+++++..+..+.|+ .+=--+.|+|||.||..
T Consensus 100 W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHV 179 (295)
T COG2321 100 WMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHV 179 (295)
T ss_pred HHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHH
Confidence 3344455443 35788888877776663332 344 245788999888877762 12345789999999975
Q ss_pred hc
Q 015854 291 LN 292 (399)
Q Consensus 291 ~~ 292 (399)
.+
T Consensus 180 Qn 181 (295)
T COG2321 180 QN 181 (295)
T ss_pred HH
Confidence 44
No 42
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=80.00 E-value=2.8 Score=34.09 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHH
Q 015854 257 FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (399)
Q Consensus 257 ~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~ 296 (399)
+..+.|++.- ..- +++.+..+++||++|.-..+...
T Consensus 8 ~~~~~i~~~~---~~~-~~~~~~~~l~HE~~H~~~~~~~~ 43 (128)
T PF13485_consen 8 PGFNRIVVYF---QGS-DEDWLDRVLAHELAHQWFGNYFG 43 (128)
T ss_pred cCCCEEEEec---CCC-CHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456666543 223 78888999999999998777653
No 43
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=79.59 E-value=1.2 Score=38.87 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhhhhh
Q 015854 275 DEEIVAVIAHELGHWK 290 (399)
Q Consensus 275 ~~El~AVlAHElGH~~ 290 (399)
..++.+|+.||+||..
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 4689999999999975
No 44
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=79.47 E-value=0.8 Score=39.42 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=20.7
Q ss_pred CceEEEcHhHHhhC-CChHHHHHHHHHHhhhhh
Q 015854 259 NKRIVLYDTLIQQC-KNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l-~~~~El~AVlAHElGH~~ 290 (399)
...|.+.+.---.. .+..++..|+.||+||.-
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~v~~HEiGHaL 117 (154)
T PF00413_consen 85 SGDIHFNDDESWTIDDSGNDLQSVAIHEIGHAL 117 (154)
T ss_dssp TTEEEEETTSHEESSSSSEEHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhhhhhhhhhhcccccc
Confidence 44566654422111 156689999999999973
No 45
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=78.46 E-value=5 Score=36.13 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=24.6
Q ss_pred CCcceEEEccCC-CceEEEcHhHHhhCCChHHHHHHHHHHhhhhh
Q 015854 247 SHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 247 ~~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~ 290 (399)
...-|+..|.+. .....+.... .- +..+...++|||+||.-
T Consensus 102 ~~G~A~~g~iC~~~~~~~v~~~~--~~-~~~~~a~~~AHElGH~l 143 (194)
T cd04269 102 TVGLAYVGGMCSPKYSGGVVQDH--SR-NLLLFAVTMAHELGHNL 143 (194)
T ss_pred ceeeeecCCccCCCcceEEEEeC--Cc-chHHHHHHHHHHHHhhc
Confidence 345667777653 3344333221 11 24678899999999975
No 46
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=78.22 E-value=3.6 Score=42.71 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=29.0
Q ss_pred CCCCCCcceEEEccCCCce----------EEEcHhHHhh-------CCChHHHHHHHHHHhhhhhhchH
Q 015854 243 STRSSHSNAYMYGFFKNKR----------IVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNHT 294 (399)
Q Consensus 243 s~~s~~~NA~~~G~~~~~~----------Ivl~~~Ll~~-------l~~~~El~AVlAHElGH~~~~h~ 294 (399)
+++.+.+.|+..|..+.+. .+|.-+.-.. + +-+|+ ..|+||+||..|...
T Consensus 213 ~R~gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll-~~~~V-~TLfHEfGHalH~~l 279 (472)
T cd06455 213 PREGKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLL-RHDEV-ETFFHEFGHVIHHLL 279 (472)
T ss_pred CCCCCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCC-CHHHH-HHHHHHHHHHHHHHh
Confidence 3445678898888743331 2333322211 2 34665 568999999987543
No 47
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.22 E-value=2.2 Score=41.40 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.7
Q ss_pred CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHH
Q 015854 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYS 297 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~ 297 (399)
.-+++.+.....++ +.+|+.|.|-||+-|+..+|+.+.
T Consensus 51 ~~~~y~NPei~~~~-p~~~~~aLl~HEV~Hi~l~Hi~r~ 88 (396)
T COG3864 51 YFTMYFNPEIFLNC-PISEMKALLKHEVYHIMLNHIKRA 88 (396)
T ss_pred ceEEEeCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999 999999999999999999998743
No 48
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=77.80 E-value=1.9 Score=46.02 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCCCcceEEEccC-CCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHH
Q 015854 243 STRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 243 s~~s~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
+++.+.+.||++|.+ +.+.|.++=+ ++.++ ...||||+||.-|....
T Consensus 348 ~r~gK~~Ga~~~~~~~~~p~il~N~~-----~~~~d-v~TLaHElGHa~H~~~~ 395 (591)
T TIGR00181 348 ENKGKRSGAYSIGGYKVKPYILMNWD-----GTLNS-VFTLAHELGHSMHSYFS 395 (591)
T ss_pred CCCCCCCCcccCCCCCCCCeEEEecC-----CCcch-HHHHHHHhhhHHHHHHH
Confidence 344567789999985 3555554311 12333 46799999999877654
No 49
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=75.98 E-value=4.2 Score=29.36 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccCCchhHHHHHHHHHHHcCCCC
Q 015854 186 WAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPL 234 (399)
Q Consensus 186 ~~~~~~~~l~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~ 234 (399)
.++...++++...+||+++.|+.+ +|=+.+.++. .|.|++.
T Consensus 9 ~~~ggfVg~iG~a~Ypi~~~Pmm~-------~eeYk~~Q~~-nR~gI~q 49 (58)
T PF15061_consen 9 LFVGGFVGLIGAALYPIYFRPMMN-------PEEYKKEQKI-NRAGIKQ 49 (58)
T ss_pred hhHHHHHHHHHHHHhhhhcccccC-------hHHHHHHHHH-HHhcccH
Confidence 344455678889999999888765 4445555555 4445543
No 50
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=75.64 E-value=2.3 Score=43.20 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHH
Q 015854 243 STRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 243 s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
+++.+.+-||+.|+++.+...|.-+.-. +.++ ...++||+||..|....
T Consensus 191 ~r~gK~~gaf~~~~~~~~~p~i~~n~~~---~~~~-v~tl~HE~GHa~h~~~~ 239 (427)
T cd06459 191 PRKGKRSGAYCTGLPPGKHPFILMNFNG---TLDD-VFTLAHELGHAFHSYLS 239 (427)
T ss_pred CCCCCCCCeecCCCCCCCCCeEEecCCC---Chhh-HHHHHHHhhHHHHHHHH
Confidence 3444667799999853333333222221 3444 45689999997765544
No 51
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=75.17 E-value=1.9 Score=40.77 Aligned_cols=18 Identities=44% Similarity=0.337 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHHhhhhhh
Q 015854 274 NDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 274 ~~~El~AVlAHElGH~~~ 291 (399)
.+.+.+.++|||+||--.
T Consensus 163 ~~~~~a~t~AHElGHnlG 180 (244)
T cd04270 163 PTKESDLVTAHELGHNFG 180 (244)
T ss_pred chhHHHHHHHHHHHHhcC
Confidence 345678999999999753
No 52
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=75.07 E-value=5 Score=39.95 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=31.3
Q ss_pred CCCCcceEEEccCC-----CceEEEcHhHHhh-------CCChHHHHHHHHHHhhhhhhchHH
Q 015854 245 RSSHSNAYMYGFFK-----NKRIVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 245 ~s~~~NA~~~G~~~-----~~~Ivl~~~Ll~~-------l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
..+...|+++++.+ .+.+.|....-.. + +.+++. .+.||+||..|....
T Consensus 111 ~gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v~-tl~HE~GHa~h~~l~ 171 (365)
T cd06258 111 KGKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLL-GHDDIN-TLFHEFGHAVHFLLI 171 (365)
T ss_pred CCCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcC-CHHHHH-HHHHHHhHHHHHHHh
Confidence 34567888888752 4556665554331 3 556665 478999999876543
No 53
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=74.70 E-value=5.8 Score=35.50 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=20.9
Q ss_pred CceEEEcHhHHhhC-CChHHHHHHHHHHhhhhh
Q 015854 259 NKRIVLYDTLIQQC-KNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l-~~~~El~AVlAHElGH~~ 290 (399)
...|.+...-.... ........++.||+||..
T Consensus 93 ~g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaL 125 (186)
T cd04277 93 GGDIWFNSSYDTNSDSPGSYGYQTIIHEIGHAL 125 (186)
T ss_pred cceeEEecCcccccCCCChhhHHHHHHHHHHHh
Confidence 34677765543221 134678999999999975
No 54
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=74.44 E-value=1.9 Score=45.71 Aligned_cols=74 Identities=23% Similarity=0.195 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHcCCCCCcE-------EEEe-CCCCCCCcceEEEccCC--CceEEEcHhHHhhCCChHHHHHHHHHHh
Q 015854 217 GELREKIEKLASSLKFPLKKL-------FVVD-GSTRSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHEL 286 (399)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i-------~v~d-~s~~s~~~NA~~~G~~~--~~~Ivl~~~Ll~~l~~~~El~AVlAHEl 286 (399)
+++.+.+.+..++.|....++ ..+| .+++.+.+.||++|+++ .+.|.++=+ ++.+++ .+|+||+
T Consensus 272 e~~~~~~~~~~~~l~~~~~e~~~~~~~~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~Nf~-----~t~~dv-~TL~HEl 345 (549)
T TIGR02289 272 DFLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFN-----GTSGDI-DVLTHEA 345 (549)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhcCccccCCCCCCCCCcccCCCCCCCCcEEEEeCC-----CChhHH-HHHHHHh
Confidence 455666666666655443222 1233 34456778999999764 454543211 144444 4689999
Q ss_pred hhhhhchHHH
Q 015854 287 GHWKLNHTMY 296 (399)
Q Consensus 287 GH~~~~h~~~ 296 (399)
||.-|....+
T Consensus 346 GHa~H~~~s~ 355 (549)
T TIGR02289 346 GHAFHVYESR 355 (549)
T ss_pred hHHHHHHHhc
Confidence 9998776443
No 55
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=74.12 E-value=0.89 Score=47.37 Aligned_cols=43 Identities=35% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCcceEEEccCCCceEEEcHhHHhh--CC-------ChHHHHHHHHHHhhhhhh
Q 015854 247 SHSNAYMYGFFKNKRIVLYDTLIQQ--CK-------NDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~--l~-------~~~El~AVlAHElGH~~~ 291 (399)
...|||-- +....||.+..+|+. .+ +---|-|||||||||--.
T Consensus 449 q~VNAYYn--p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFD 500 (654)
T COG3590 449 QTVNAYYN--PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFD 500 (654)
T ss_pred HHhhhhcC--CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhccccc
Confidence 46899876 346678888887754 10 223589999999999643
No 56
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=72.63 E-value=4.2 Score=41.87 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=32.1
Q ss_pred CcEEEEeCCCCCCCcceEEEccCCC--------ceEEEcHhHHh-------hCCChHHHHHHHHHHhhhhhhc
Q 015854 235 KKLFVVDGSTRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLN 292 (399)
Q Consensus 235 ~~i~v~d~s~~s~~~NA~~~G~~~~--------~~Ivl~~~Ll~-------~l~~~~El~AVlAHElGH~~~~ 292 (399)
..+|+=--+++.+...|+..++.++ +..+|.-+.-. .+ +.+++ -.|+||+||..|.
T Consensus 186 g~~ylDl~~R~gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v-~tLfHE~GHa~H~ 256 (458)
T PF01432_consen 186 GYIYLDLYPRPGKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLL-SHDDV-ETLFHEFGHAMHS 256 (458)
T ss_dssp EEEEEEES--TTS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B--SHHHH-HHHHHHHHHHHHH
T ss_pred hcccccchhcCCCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCcc-ChhhH-HHHHHHHhHHHHH
Confidence 3455543455567788999987544 45555444333 13 56777 6799999998764
No 57
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=71.72 E-value=12 Score=34.77 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCcceEEEccCCCceEEEcHhHHhhCC--------C--------hHHHHHHHHHHhhhhhh
Q 015854 247 SHSNAYMYGFFKNKRIVLYDTLIQQCK--------N--------DEEIVAVIAHELGHWKL 291 (399)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~l~--------~--------~~El~AVlAHElGH~~~ 291 (399)
+..|||.- |..+.|.+.-.+++... + .+-+..++.||+||..-
T Consensus 47 Ge~nA~yd--Pe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAlI 105 (220)
T PF14247_consen 47 GEDNAFYD--PENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHALI 105 (220)
T ss_pred CCCCCccC--CCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999876 35778888776654310 1 23467899999999643
No 58
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=71.53 E-value=2 Score=38.76 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHHhhhhh
Q 015854 274 NDEEIVAVIAHELGHWK 290 (399)
Q Consensus 274 ~~~El~AVlAHElGH~~ 290 (399)
+..+-.-++|||+||.-
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 46778889999999964
No 59
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=71.41 E-value=2.4 Score=45.47 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=30.1
Q ss_pred CCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHHH
Q 015854 246 SSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYS 297 (399)
Q Consensus 246 s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~~ 297 (399)
.+.+-||+.|..++....|.-+...++ .=..+|+||+||..|......
T Consensus 352 gKrsGaYs~~~~~~~~p~IlmN~~gt~----~dV~TLaHElGHs~Hs~~s~~ 399 (598)
T COG1164 352 GKRSGAYSIGFYKGDHPFILMNYDGTL----RDVFTLAHELGHSVHSYFSRK 399 (598)
T ss_pred CCCCCcccCCCCCCCCCeEEEeCCCch----hHHHHHHHHccHHHHHHHHhc
Confidence 467889999985434444433322222 224689999999988754443
No 60
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=70.56 E-value=2.2 Score=35.29 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=9.9
Q ss_pred HHHHHHhhhhh
Q 015854 280 AVIAHELGHWK 290 (399)
Q Consensus 280 AVlAHElGH~~ 290 (399)
.+++||+||.-
T Consensus 109 ~~~~HEiGH~l 119 (124)
T PF13582_consen 109 DTFAHEIGHNL 119 (124)
T ss_dssp THHHHHHHHHT
T ss_pred eEeeehhhHhc
Confidence 89999999964
No 61
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=70.50 E-value=9.2 Score=34.19 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHHHcCCC---CCcEEEEeCCCCCCCcceEEEccCC-CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhh
Q 015854 216 EGELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~---~~~i~v~d~s~~s~~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~ 291 (399)
.|.++-.++++ ++.|-+ .+.|...+-+. -...|+.+ .+.|+|=..-+ .+.++++-+|+|||-|.-.
T Consensus 15 sp~v~fl~~~~-~~~gc~~~~~~~i~c~~C~~------~~~Ggf~p~~~~I~lC~N~~---~~~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 15 SPTVRFLMEAL-KKLGCPPVPPRHIKCEPCDS------SVSGGFDPSKKGIVLCQNRI---RSQGHLEDTLTHELIHAYD 84 (173)
T ss_pred CcHHHHHHHHH-HHcCCCCCCCCCeEEEECcC------CCcCCccCCCCCEEEeeCCC---CCHHHHHHHHHHHHHHHHH
Confidence 35555566665 445544 34555555421 13445544 77788876644 3899999999999999764
Q ss_pred c
Q 015854 292 N 292 (399)
Q Consensus 292 ~ 292 (399)
.
T Consensus 85 ~ 85 (173)
T PF09768_consen 85 H 85 (173)
T ss_pred H
Confidence 4
No 62
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=70.44 E-value=3.3 Score=34.44 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=22.2
Q ss_pred ceEEEcHh-HHhhCCCh------HHHHHHHHHHhhhhh
Q 015854 260 KRIVLYDT-LIQQCKND------EEIVAVIAHELGHWK 290 (399)
Q Consensus 260 ~~Ivl~~~-Ll~~l~~~------~El~AVlAHElGH~~ 290 (399)
.||.+|.. +++.+ .+ |++.-|+-||+||.-
T Consensus 85 ~rItlYRrailDyw-ae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 85 DRITLYRRALLDYW-AENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred ceeeeeHHHHHHHH-hhhhhhHhhHhhhhhhhhhhhhc
Confidence 67888887 56666 33 467788999999963
No 63
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=70.30 E-value=8.8 Score=37.15 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=37.0
Q ss_pred hhccCccCCchh-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEc
Q 015854 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 255 (399)
Q Consensus 207 lf~~~~pl~~~~-L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G 255 (399)
.+.+|+|++||+ +++.+.++|++.|+. .+|++-+ ...|+.+.|
T Consensus 9 a~Y~f~~i~dp~~~~~~l~~~~~~~~vk-GrillA~-----EGINgtvsG 52 (308)
T COG1054 9 AYYKFVPIEDPEALRDPLLALCKALGVK-GRILLAH-----EGINGTVSG 52 (308)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCce-eEEEEcc-----CCcceeEec
Confidence 467899999875 889999999999997 5888877 479999987
No 64
>PF14891 Peptidase_M91: Effector protein
Probab=70.21 E-value=14 Score=32.77 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHhhhhhh
Q 015854 275 DEEIVAVIAHELGHWKL 291 (399)
Q Consensus 275 ~~El~AVlAHElGH~~~ 291 (399)
+.+=..+|+|||+|..+
T Consensus 100 ~~~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 100 PRPPFVVLYHELIHAYD 116 (174)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34557899999999753
No 65
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=70.20 E-value=2.3 Score=37.24 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=27.7
Q ss_pred cEEEEeCCCCC-CCcceEEEccCCC-------ceEEEcHhHHh-hCCChHHHHHHHHHHhhhhh-hchHHHH
Q 015854 236 KLFVVDGSTRS-SHSNAYMYGFFKN-------KRIVLYDTLIQ-QCKNDEEIVAVIAHELGHWK-LNHTMYS 297 (399)
Q Consensus 236 ~i~v~d~s~~s-~~~NA~~~G~~~~-------~~Ivl~~~Ll~-~l~~~~El~AVlAHElGH~~-~~h~~~~ 297 (399)
+|+|++..... ...++-...+|.. ..|++....+. .. +.....-+++||+|||- ..|++..
T Consensus 19 NIwv~~~~~~~g~~~~~G~A~~P~~~~~~~~~~~vv~~~~~l~~~~-~~~~~g~TltHEvGH~LGL~HtF~~ 89 (154)
T PF05572_consen 19 NIWVVNDLYDGGGTSILGYAYFPWSGMSDNGTDGVVINYRYLGGNN-SQYNFGKTLTHEVGHWLGLYHTFGG 89 (154)
T ss_dssp EEEEES-EE-TTS-EESEEE--TTS-GGG-SEEEEGGGSSSSTT---TTS-SSHHHHHHHHHHTT---TT--
T ss_pred EEEEecccccCCCCCCCeEEeCCCCCCCCCCCCEEEEcCcccCCCC-CccccccchhhhhhhhhcccccccC
Confidence 78888732111 1223333334322 23444433332 23 55667899999999997 4566554
No 66
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=69.79 E-value=18 Score=36.97 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHhhhhHHHHhccCCccchhHHHHHHHHHHHHHhhccccHHhhhh
Q 015854 66 HEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYST 131 (399)
Q Consensus 66 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~lPf~~y~~ 131 (399)
+....++..+++++-|+.||+.|++. +|-.++.++.+++-+|.--+++
T Consensus 544 ~a~~~Lia~~L~L~iGliPWiDN~aH------------------lfG~i~GLl~s~~~~PYi~Fg~ 591 (652)
T KOG2290|consen 544 RAFFHLIATLLVLCIGLIPWIDNWAH------------------LFGTIFGLLTSIIFLPYIDFGD 591 (652)
T ss_pred HHHHHHHHHHHHHHhccccchhhHHH------------------HHHHHHHHHHHHHhhccccccc
Confidence 45566777778888899999987642 3446677788888888433333
No 67
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=69.32 E-value=2.6 Score=36.61 Aligned_cols=16 Identities=50% Similarity=0.565 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHhhhhh
Q 015854 275 DEEIVAVIAHELGHWK 290 (399)
Q Consensus 275 ~~El~AVlAHElGH~~ 290 (399)
..+...+++||+||.-
T Consensus 93 ~~~~~~~~~HElGH~L 108 (167)
T cd00203 93 TKEGAQTIAHELGHAL 108 (167)
T ss_pred cccchhhHHHHHHHHh
Confidence 4578999999999975
No 68
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=67.90 E-value=26 Score=26.94 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=33.9
Q ss_pred CchhHHHHH----HHHHHHcCCCCC---cEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHH
Q 015854 215 PEGELREKI----EKLASSLKFPLK---KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIA 283 (399)
Q Consensus 215 ~~~~L~~~i----~~l~~~~g~~~~---~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlA 283 (399)
.|++.++++ ...+++.|+..+ +|.|++.+. . ..++||+..=-..+ |++||.+|-+
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~---~----------~~~lVlP~~P~~~l-se~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESP---T----------VLYLVLPVNPDIEL-TDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCC---C----------eEEEEecCCCCCCC-CHHHHHHhhC
Confidence 477777766 566777798754 788888641 2 22333321111178 9999999853
No 69
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=67.52 E-value=2.7 Score=37.42 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhh
Q 015854 278 IVAVIAHELGHWK 290 (399)
Q Consensus 278 l~AVlAHElGH~~ 290 (399)
-.-++|||+||.-
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 3445999999965
No 70
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=67.24 E-value=2.9 Score=36.42 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=21.2
Q ss_pred CCceEEEcHhHHhhC---CChHHHHHHHHHHhhhhh
Q 015854 258 KNKRIVLYDTLIQQC---KNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 258 ~~~~Ivl~~~Ll~~l---~~~~El~AVlAHElGH~~ 290 (399)
..+.|.+.+.-.-.. .+...+..|+.||+||.-
T Consensus 84 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 84 IGGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHAL 119 (157)
T ss_pred cceeEEECCCcccccCCCCccchHHHHHHHHhcccc
Confidence 356676665422111 034679999999999963
No 71
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=67.08 E-value=4.4 Score=37.45 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=23.2
Q ss_pred CcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhh
Q 015854 248 HSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 248 ~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~ 290 (399)
..-|+.-|.+...++.+... .- ...+-..++|||+||.-
T Consensus 119 ~G~A~~g~~C~~~~~~~~~d---~~-~~~~~~~~~AHElGH~l 157 (220)
T cd04272 119 GGYAYVGGACTENRVAMGED---TP-GSYYGVYTMTHELAHLL 157 (220)
T ss_pred cceEeecCccCCCceeEeec---CC-CCcccHHHHHHHHHHHh
Confidence 35677777754344433211 11 11355899999999975
No 72
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=65.82 E-value=5.6 Score=37.76 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=26.5
Q ss_pred cHhHHhhC--CChHHHHHHHHHHhhhhh---hchHHHHHHH
Q 015854 265 YDTLIQQC--KNDEEIVAVIAHELGHWK---LNHTMYSFIA 300 (399)
Q Consensus 265 ~~~Ll~~l--~~~~El~AVlAHElGH~~---~~h~~~~~~~ 300 (399)
.|.|++.+ +++++++..|-||++|-| ++|...+-.+
T Consensus 182 dDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNEsF 222 (376)
T COG4324 182 DDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNESF 222 (376)
T ss_pred ccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhHHH
Confidence 35565543 389999999999999976 6777666443
No 73
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=65.27 E-value=10 Score=39.63 Aligned_cols=47 Identities=32% Similarity=0.354 Sum_probs=33.3
Q ss_pred CcEEEEeCCCCCCCcceEEEccCCCce-EEEcHhHHhhCCChHHHHHHHHHHhhhhhhc
Q 015854 235 KKLFVVDGSTRSSHSNAYMYGFFKNKR-IVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (399)
Q Consensus 235 ~~i~v~d~s~~s~~~NA~~~G~~~~~~-Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~ 292 (399)
-++.++..|-. +.|+- ++. ..++.+|+. .++-+.-|||||++|---|
T Consensus 255 yDllvlPpSFP-------~gGME-NPcltF~TpTlla---GDrsl~~vIaHEIAHSWtG 302 (613)
T KOG1047|consen 255 YDLLVLPPSFP-------FGGME-NPCLTFVTPTLLA---GDRSLVDVIAHEIAHSWTG 302 (613)
T ss_pred ceEEEecCCCC-------ccccc-Ccceeeecchhhc---CCcchhhHHHHHhhhhhcc
Confidence 37888876532 23442 344 468889886 6788899999999997544
No 74
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=65.05 E-value=4.2 Score=37.39 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhhhchHHH
Q 015854 276 EEIVAVIAHELGHWKLNHTMY 296 (399)
Q Consensus 276 ~El~AVlAHElGH~~~~h~~~ 296 (399)
--+..+++||++|+..+|...
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~ 119 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGD 119 (206)
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 457789999999999999866
No 75
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=63.66 E-value=2.8 Score=37.69 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHhhhhh
Q 015854 275 DEEIVAVIAHELGHWK 290 (399)
Q Consensus 275 ~~El~AVlAHElGH~~ 290 (399)
..+...++|||+||.-
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 4577889999999986
No 76
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=63.11 E-value=12 Score=37.21 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=45.1
Q ss_pred cCCchhHHHHHHHHHHHc----CCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhh-
Q 015854 213 PLPEGELREKIEKLASSL----KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG- 287 (399)
Q Consensus 213 pl~~~~L~~~i~~l~~~~----g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElG- 287 (399)
.++..+..+.+++.+++. +++ .+|.+-|+ -.++|.+. +++|.|..+. .+ ++.++++.+-||+|
T Consensus 108 ~~~a~~~~~~~~~~~~~y~~~~~~~-~~V~~sdd----l~a~A~v~----~~~l~I~~~~--~f-s~~~l~~L~~HEigv 175 (349)
T PF08014_consen 108 TLDAEEAVSRLQERLKKYFGKEGFE-VKVELSDD----LLARAMVS----GDRLKINKNA--MF-SERDLEALLHHEIGV 175 (349)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCce-EEEEEcCC----cchhhccc----CCeeEEcCCC--Cc-CHHHHHHHHHHhhhh
Confidence 355677777787777776 443 24444443 34677655 3558887753 35 99999999999996
Q ss_pred hhhhc
Q 015854 288 HWKLN 292 (399)
Q Consensus 288 H~~~~ 292 (399)
|+...
T Consensus 176 H~lt~ 180 (349)
T PF08014_consen 176 HLLTT 180 (349)
T ss_pred hhccc
Confidence 65433
No 77
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=63.08 E-value=4.4 Score=43.29 Aligned_cols=44 Identities=23% Similarity=0.411 Sum_probs=27.5
Q ss_pred CCCCcceEEEccCC--CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchH
Q 015854 245 RSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (399)
Q Consensus 245 ~s~~~NA~~~G~~~--~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~ 294 (399)
+.+.+.||+.|+++ .++|.++=+ . +.+++ ..++||+||..|...
T Consensus 346 ~gK~~Ga~~~~~~~~~~p~i~~N~~--~---~~~~v-~TL~HE~GHa~H~~l 391 (587)
T TIGR02290 346 PGKRGGAFCTGFPPSKEPRVLMNYD--G---SRRDV-STLAHELGHAYHSEL 391 (587)
T ss_pred CCCCCCcccCCCCCCCCCEEEEecC--C---CchhH-HHHHHHhhHHHHHHH
Confidence 34677899998753 344444311 1 33343 468999999998643
No 78
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=63.07 E-value=6.9 Score=34.12 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhh
Q 015854 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~ 290 (399)
.-.|||--| .+++..|+--..+.+--.=.=|+|||++|-.
T Consensus 108 ~~~NAfW~g----~~m~yGdG~~~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 108 NYNNAFWNG----SQMVYGDGDGQIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp STT-EEE-S----SSEEEE---SSSBS-GGG-HHHHHHHHHHHH
T ss_pred CccCccccC----CEEEEECCCCcccccCccccceeeecccccc
Confidence 578999875 5788888743223111222349999999954
No 79
>PRK01415 hypothetical protein; Validated
Probab=62.73 E-value=17 Score=34.50 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=36.7
Q ss_pred hhccCccCCchh-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEc
Q 015854 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 255 (399)
Q Consensus 207 lf~~~~pl~~~~-L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G 255 (399)
.|++|+|++|++ +++.+.++|++.|+. .+|++-+ ...|+.+.|
T Consensus 9 ~fY~f~~i~~~~~~~~~l~~~~~~~~~~-G~i~la~-----EGIN~tisg 52 (247)
T PRK01415 9 SAYSFVNIEEPANLIPKLLLIGKRKYVR-GTILLAN-----EGFNGSFSG 52 (247)
T ss_pred EEEccccCCCHHHHHHHHHHHHHHcCCe-eEEEEcc-----CccceEeeC
Confidence 578999999866 889999999999986 6888876 378999987
No 80
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=62.19 E-value=13 Score=37.74 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=42.1
Q ss_pred cCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHH--HHHHHHhhhhh
Q 015854 213 PLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIV--AVIAHELGHWK 290 (399)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~--AVlAHElGH~~ 290 (399)
+.+...=++.-+++++..|+..++-. +|.+ .+.|+.|+++ ..+.|+...- ..|=+. .-++||+||-.
T Consensus 103 ~~~~~~Q~~~~~~~~~~~g~df~~gr-iD~s-----~hpF~~~~~~-~dvRItt~y~----~~d~~~~l~t~iHE~GHal 171 (396)
T cd06460 103 PFPEEKQEALGRELLEALGFDFDRGR-LDVS-----AHPFTGGLGP-GDVRITTRYD----ENDFRSALFSTIHETGHAL 171 (396)
T ss_pred CCCHHHHHHHHHHHHHHhCCcccCCe-eecC-----CCCCCCCCCC-CCceEEeeeC----CcchHHHHHHHHHHhhHHH
Confidence 34444444556688899999875544 4542 3458888743 2444444321 122233 35789999998
Q ss_pred hchH
Q 015854 291 LNHT 294 (399)
Q Consensus 291 ~~h~ 294 (399)
+...
T Consensus 172 ye~~ 175 (396)
T cd06460 172 YEQG 175 (396)
T ss_pred HHhc
Confidence 8873
No 81
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=61.53 E-value=6.3 Score=35.77 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=25.4
Q ss_pred CCceEEEcHhHHhhC--C-------ChHHHHHHHHHHhhhhhhchH
Q 015854 258 KNKRIVLYDTLIQQC--K-------NDEEIVAVIAHELGHWKLNHT 294 (399)
Q Consensus 258 ~~~~Ivl~~~Ll~~l--~-------~~~El~AVlAHElGH~~~~h~ 294 (399)
...+|+++.+++..- + +-.-+-+||||||+|.-..+.
T Consensus 7 ~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g 52 (206)
T PF01431_consen 7 RFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEG 52 (206)
T ss_dssp TTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTG
T ss_pred ccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 467788888776431 0 223578999999999875544
No 82
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=61.17 E-value=6.2 Score=35.71 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHhhhh
Q 015854 274 NDEEIVAVIAHELGHW 289 (399)
Q Consensus 274 ~~~El~AVlAHElGH~ 289 (399)
+......++|||+||.
T Consensus 127 ~~~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 127 SGLSFAVIIAHELGHN 142 (199)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6778899999999995
No 83
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=60.07 E-value=16 Score=41.00 Aligned_cols=18 Identities=44% Similarity=0.383 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhhch
Q 015854 276 EEIVAVIAHELGHWKLNH 293 (399)
Q Consensus 276 ~El~AVlAHElGH~~~~h 293 (399)
+.++.|+|||++|--.|+
T Consensus 281 ~~i~~VIaHElaHqWfGN 298 (863)
T TIGR02414 281 ERIESVIAHEYFHNWTGN 298 (863)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 458899999999966553
No 84
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=58.84 E-value=1.3e+02 Score=33.17 Aligned_cols=58 Identities=14% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHHhhccccHHhhhhhhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015854 115 VMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIV 174 (399)
Q Consensus 115 ~~l~~~~~~lPf~~y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~~l~~~l~~~~~~l~ 174 (399)
..++..++.||.+||++...-+- .++..--.-+.+.+-+.+++.++-.+++.+...++
T Consensus 231 ~~~~~hll~Lpl~~f~~r~~Ge~--~sR~~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm 288 (709)
T COG2274 231 GRFFRHLLRLPLSYFEKRSVGEI--ISRVRELEQIREFLTGSILTLIIDLLFALIFLAVM 288 (709)
T ss_pred HHHHHHHHcCcHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888875432110 01122222344555555555555555554444443
No 85
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=58.69 E-value=3.5 Score=38.52 Aligned_cols=11 Identities=55% Similarity=0.752 Sum_probs=9.7
Q ss_pred HHHHHHhhhhh
Q 015854 280 AVIAHELGHWK 290 (399)
Q Consensus 280 AVlAHElGH~~ 290 (399)
.++|||+||--
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 58999999975
No 86
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=58.30 E-value=4.7 Score=36.99 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhh
Q 015854 276 EEIVAVIAHELGHWK 290 (399)
Q Consensus 276 ~El~AVlAHElGH~~ 290 (399)
++. -+++||+||.-
T Consensus 136 ~~~-~~~aHEiGH~l 149 (206)
T PF13583_consen 136 NGY-QTFAHEIGHNL 149 (206)
T ss_pred ccc-hHHHHHHHHHh
Confidence 344 44999999976
No 87
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=58.21 E-value=16 Score=36.66 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=45.5
Q ss_pred cCCchhHHHHHHHHHHHcCCCC-CcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhh
Q 015854 213 PLPEGELREKIEKLASSLKFPL-KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (399)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~-~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElG 287 (399)
+++.++..+.+++.+++.+... .+|.+-|+ -.++|.+. +++|.|..+. .+ ++.++++++-||+|
T Consensus 133 ~~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~----l~a~a~v~----~~~l~i~~~a--~f-s~~~l~~L~~HEig 197 (366)
T TIGR02421 133 PVSATEAAEILQQRLEDYFGEETIRVTLSDD----LPAGAMVS----GDKLKLNSDA--MF-SERDLEALIHHEIG 197 (366)
T ss_pred CcCHHHHHHHHHHHHHHhCCCCceEEEECcc----hhHHHhcc----CCeEEECCCC--Cc-CHHHHHHHHHHhHH
Confidence 3556788999999999988752 23333332 23567665 3478888764 35 99999999999999
No 88
>PRK14015 pepN aminopeptidase N; Provisional
Probab=57.64 E-value=18 Score=40.64 Aligned_cols=18 Identities=44% Similarity=0.383 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhhhch
Q 015854 276 EEIVAVIAHELGHWKLNH 293 (399)
Q Consensus 276 ~El~AVlAHElGH~~~~h 293 (399)
..++.|+|||++|--.|+
T Consensus 294 ~~i~~vIaHElaHqWFGN 311 (875)
T PRK14015 294 ERIESVIAHEYFHNWTGN 311 (875)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 348899999999966554
No 89
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.29 E-value=1.2e+02 Score=30.39 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 015854 140 FNKQTIWLFFRDMIKGMILAIVLGPPIVS 168 (399)
Q Consensus 140 ~~~~t~~~~~~d~~k~~~l~~~l~~~l~~ 168 (399)
|+-+|...+++..+|..+++.+....+-.
T Consensus 138 Fs~~~~vEllKsllKi~~v~~v~~~~l~~ 166 (363)
T COG1377 138 FSLQTLVELLKSLLKIVLVGLVAYFVLKN 166 (363)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777665555443
No 90
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=56.82 E-value=6.2 Score=39.35 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHH-hh--CC---ChHHHHHHHHHHhhhhh
Q 015854 219 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI-QQ--CK---NDEEIVAVIAHELGHWK 290 (399)
Q Consensus 219 L~~~i~~l~~~~g~~--~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll-~~--l~---~~~El~AVlAHElGH~~ 290 (399)
..+.++-+.+..|.| .+++-++-.+. -..++ +..-+-|.+.+..+ .. .. ...++..++|||++|--
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~--~~~~~----me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqW 307 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPD--FPFGG----MENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQW 307 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST---SSSE----E--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhhccccceecceeEEEEec--ccccc----ccccccccccccccccCcccccchhhhhhHHHHHHHHHHHH
Confidence 445566666777865 44543433210 11122 21233455555432 11 00 23579999999999975
Q ss_pred hch
Q 015854 291 LNH 293 (399)
Q Consensus 291 ~~h 293 (399)
-++
T Consensus 308 fGn 310 (390)
T PF01433_consen 308 FGN 310 (390)
T ss_dssp BTT
T ss_pred hcc
Confidence 544
No 91
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=56.34 E-value=12 Score=32.99 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=30.7
Q ss_pred ccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHHH
Q 015854 255 GFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (399)
Q Consensus 255 G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~~ 296 (399)
|+.+++-|++-..-+. +.+++.-|++||+-|.-..|-++
T Consensus 71 Gy~~~~gIvlCqN~l~---~q~h~n~vv~HElIH~fDd~r~~ 109 (194)
T KOG3314|consen 71 GYTPGRGIVLCQNRLT---IQDHVNQVVIHELIHAFDDCRAK 109 (194)
T ss_pred CccCCCceEEeccccc---hHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666998887542 78999999999999998777665
No 92
>PRK08456 flagellar motor protein MotA; Validated
Probab=56.16 E-value=1.9e+02 Score=27.54 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=39.0
Q ss_pred ccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhH---HhhCCChHHHHHHHHHHhhh
Q 015854 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTL---IQQCKNDEEIVAVIAHELGH 288 (399)
Q Consensus 212 ~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~L---l~~l~~~~El~AVlAHElGH 288 (399)
...+..++.+.+.+++++...+ ...-.+...++. .+. ++.+++ .+.. +++|++.++-.|+..
T Consensus 70 ~~~~~~~li~~l~~l~~~~r~~--g~laLe~~~~~~-~~~-----------fl~~gL~~~~~g~-~~~~i~~~le~ei~~ 134 (257)
T PRK08456 70 PGVNLNERIKQLVELATLARKD--GVLALEGRVAQI-EDE-----------FLKNGLSMLVDGK-DLEEIKESMEIQIEE 134 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhhh--hHHHHhhcccCc-HHH-----------HHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 3445567888888888877543 222222111111 111 112232 2345 889999999999998
Q ss_pred hhhchH
Q 015854 289 WKLNHT 294 (399)
Q Consensus 289 ~~~~h~ 294 (399)
..++|.
T Consensus 135 ~~~~~~ 140 (257)
T PRK08456 135 MEEYYH 140 (257)
T ss_pred HHHHHH
Confidence 777765
No 93
>PRK05320 rhodanese superfamily protein; Provisional
Probab=55.77 E-value=15 Score=34.99 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=42.3
Q ss_pred hhccCccCCchh-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHH
Q 015854 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI 269 (399)
Q Consensus 207 lf~~~~pl~~~~-L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll 269 (399)
.|++|+|++|++ +++.+.++|++.|+. .+|++-+ ...|+-+.| +..+|-...+.+
T Consensus 7 ~~Y~f~~i~~~~~~~~~~~~~~~~~~~~-G~i~ia~-----eGiN~t~~g--~~~~id~~~~~l 62 (257)
T PRK05320 7 AAYKFVSLDDPETLRPLVLARCEALGLK-GTILLAP-----EGINLFLAG--TREAIDAFYAWL 62 (257)
T ss_pred EEEceeecCCHHHHHHHHHHHHHHCCCe-EEEEEcC-----CCceEEEEe--eHHHHHHHHHHH
Confidence 578999999865 889999999999986 6888876 378999987 345554444444
No 94
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=55.47 E-value=2e+02 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=26.0
Q ss_pred HhhCCChHHHHHHHHHHhhhhhhchHHHHHHHHH
Q 015854 269 IQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (399)
Q Consensus 269 l~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~ 302 (399)
++.. +++|++.++-+|+.+...+|..-.-.+..
T Consensus 121 vDG~-~~~~i~~iLe~ei~~~~~r~~~~~~v~~~ 153 (271)
T PRK06926 121 IDGW-EPETIRDIMMAEIAAMEERHRKGRRIFEK 153 (271)
T ss_pred HCCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556 99999999999999999888765554443
No 95
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=55.16 E-value=16 Score=29.41 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=22.1
Q ss_pred CceEEEcHhH-HhhCCChH----HHHHHHHHHhhhhhhch
Q 015854 259 NKRIVLYDTL-IQQCKNDE----EIVAVIAHELGHWKLNH 293 (399)
Q Consensus 259 ~~~Ivl~~~L-l~~l~~~~----El~AVlAHElGH~~~~h 293 (399)
..+|+|+..= .+.+.+.+ ++.-++-||+||+-.-+
T Consensus 49 p~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~ 88 (97)
T PF06262_consen 49 PDRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGIS 88 (97)
T ss_dssp -EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3789988874 44444544 56677889999976543
No 96
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=54.80 E-value=2e+02 Score=27.39 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=49.3
Q ss_pred ccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhh
Q 015854 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 212 ~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~ 291 (399)
++.+..++-+.+-+++++..-+ .+.-.+.. ...|.|+- +-+ +-+.+.- +++|++.++-.|+....+
T Consensus 69 ~~~~~~~~i~~l~~la~~aR~~--GllaLE~~---~i~d~f~~-----~~l---~l~vdg~-~~~~i~~~l~~~~~~~~~ 134 (254)
T PRK08990 69 KIDKPEDLIEQIVEMADAARKG--GFLALEEA---EISNSFMQ-----KGV---DLLVDGH-DGDVVRAALEKDIALTEE 134 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHhhc--cHhhhhcc---ccchHHHH-----HHH---HHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 3444567777777777665332 22222221 12333221 100 1123345 899999999999999888
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHHHhc
Q 015854 292 NHTMYSFIAVQVL-TLLQFGGYTLVRN 317 (399)
Q Consensus 292 ~h~~~~~~~~~~~-~~~~~~l~~~~~~ 317 (399)
+|-...-.+..+. ..-.+.+++.+.+
T Consensus 135 ~~~~~~~~l~~~a~~aP~lGllGTVlG 161 (254)
T PRK08990 135 RHETGIGIFRAFGDVAPAMGMIGTLIG 161 (254)
T ss_pred HHHhHhHHHHHHHHHhHHHHHHHHHHH
Confidence 8876665554432 2223444454443
No 97
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=54.55 E-value=1.5e+02 Score=25.86 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCccCCchhHHHHHHHHHH
Q 015854 150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLF-NKFTPLPEGELREKIEKLAS 228 (399)
Q Consensus 150 ~d~~k~~~l~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~p~~i~plf-~~~~pl~~~~L~~~i~~l~~ 228 (399)
.|.++-.++..++.+.++.++.++=.+....+-=...+++..+ +++..+. +...- ++-..-+-+..-.-++.+|+
T Consensus 15 ~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~l-l~l~giq---~~~y~~~~~~~~q~~~~~~fi~~vA~ 90 (149)
T PF11694_consen 15 NDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLL-LLLIGIQ---YSDYQQNQNQHSQSSQMVHFIESVAK 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHH-HHHHHHH---HHHHHHHhhhHhHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666665542222221111 1111111 11111 11111223567778999999
Q ss_pred HcCCCCCcEEEEeC
Q 015854 229 SLKFPLKKLFVVDG 242 (399)
Q Consensus 229 ~~g~~~~~i~v~d~ 242 (399)
+.|++.++|++-..
T Consensus 91 ~~~V~~~~v~VNst 104 (149)
T PF11694_consen 91 DLGVSKEEVYVNST 104 (149)
T ss_pred HhCCChheEEEecc
Confidence 99999999998653
No 98
>PRK06298 type III secretion system protein; Validated
Probab=53.08 E-value=1.9e+02 Score=28.94 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 231 dP~iK~rrR~~~re~~~~~m~~~V~~AdVVItN 263 (356)
T PRK06298 231 NPEIKGRRRQIAQEIAYEDTSSQVKHASAVVSN 263 (356)
T ss_pred CHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEEC
Confidence 788999888776643 45555777776
No 99
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=52.42 E-value=2.1e+02 Score=28.59 Aligned_cols=26 Identities=12% Similarity=0.418 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 230 dP~iK~rrR~~~re~a~~~m~~~V~~AdVVItN 262 (347)
T TIGR00328 230 DPEVKGRIRQMQREAARRRMMQEVPKADVVITN 262 (347)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEEC
Confidence 788998888777653 45556787777
No 100
>PRK08124 flagellar motor protein MotA; Validated
Probab=51.98 E-value=2.2e+02 Score=27.15 Aligned_cols=47 Identities=19% Similarity=0.059 Sum_probs=30.4
Q ss_pred hhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHHH-HHHHHHHHHHHhc
Q 015854 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVL-TLLQFGGYTLVRN 317 (399)
Q Consensus 270 ~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~~-~~~~~~l~~~~~~ 317 (399)
+.- +++|++.++-.|+....++|-...-....+. ..-.+.+++.+.+
T Consensus 118 ~g~-~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~AP~lGllGTVlG 165 (263)
T PRK08124 118 DGQ-SPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIG 165 (263)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 345 8999999999999988887766555554332 2233444554443
No 101
>PRK09109 motC flagellar motor protein; Reviewed
Probab=51.67 E-value=2.1e+02 Score=26.93 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=30.5
Q ss_pred hhCCChHHHHHHHHHHhhhhhhchHHHHHHHHHH-HHHHHHHHHHHHhc
Q 015854 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV-LTLLQFGGYTLVRN 317 (399)
Q Consensus 270 ~~l~~~~El~AVlAHElGH~~~~h~~~~~~~~~~-~~~~~~~l~~~~~~ 317 (399)
+.. ++|+++.++-.|+.....+|-...-.+..+ ...-.+.+++.+.+
T Consensus 117 ~g~-~~~~i~~~le~~i~~~~~r~~~~~~~l~~~a~~AP~lGllGTVlG 164 (246)
T PRK09109 117 DGA-EPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMG 164 (246)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHHHHHHHHHH
Confidence 355 899999999999999988876555444433 22223444554443
No 102
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=51.11 E-value=2.5e+02 Score=28.14 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=19.7
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 239 dP~iK~r~Rq~~re~~~~~m~~~V~~AdVVItN 271 (358)
T PRK13109 239 DPSVKARLRSLAQDRARNRMLANVPRATLVIAN 271 (358)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEEC
Confidence 789999988877754 45556788877
No 103
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=50.96 E-value=7.4 Score=32.94 Aligned_cols=12 Identities=58% Similarity=0.722 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhh
Q 015854 279 VAVIAHELGHWK 290 (399)
Q Consensus 279 ~AVlAHElGH~~ 290 (399)
.+|++||+||..
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 469999999964
No 104
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=50.15 E-value=51 Score=29.58 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhh
Q 015854 277 EIVAVIAHELGHW 289 (399)
Q Consensus 277 El~AVlAHElGH~ 289 (399)
-+.-...||+||.
T Consensus 124 R~~k~~~HElGH~ 136 (179)
T PRK13267 124 RVRKEVTHELGHT 136 (179)
T ss_pred HHHHHHHHHHHHH
Confidence 4455589999997
No 105
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=49.92 E-value=23 Score=39.57 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCC--CCcE--EEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhC-CC---hHHHHHHHHHHhhhhhh
Q 015854 220 REKIEKLASSLKFP--LKKL--FVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQC-KN---DEEIVAVIAHELGHWKL 291 (399)
Q Consensus 220 ~~~i~~l~~~~g~~--~~~i--~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l-~~---~~El~AVlAHElGH~~~ 291 (399)
++.++-+.+..|+| .++. ..+++ .++ -|+-.-+.|...+..+..- .+ .+.+..|+|||++|---
T Consensus 229 ~~~l~~~e~~fg~pYP~~k~d~V~vP~------f~~--GaMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWF 300 (831)
T TIGR02412 229 RQGLAFFHRKFGYPYPFKKYDQIFVPE------FNA--GAMENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWF 300 (831)
T ss_pred HHHHHHHHHHhCCCCCcccCCEEEcCC------CCC--CcccccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34555566677865 3333 33332 121 1222234455555544211 02 34577899999999766
Q ss_pred ch
Q 015854 292 NH 293 (399)
Q Consensus 292 ~h 293 (399)
|+
T Consensus 301 Gn 302 (831)
T TIGR02412 301 GD 302 (831)
T ss_pred CC
Confidence 53
No 106
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=49.90 E-value=1.1e+02 Score=29.18 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=49.0
Q ss_pred HHHHHhhhccCccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHH
Q 015854 201 PVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVA 280 (399)
Q Consensus 201 p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~A 280 (399)
|..+.-.|.+.++....|+-..+-++++++.-. .+.-+++. .....|.|.. ++=|+ +++.- +++|+++
T Consensus 60 ~k~~~~~F~~~k~~~~~~li~~l~~la~~~Rk~--GllaLE~~-~~~~~d~Fi~---~glrl-----iVdG~-~~~~I~~ 127 (266)
T COG1291 60 PKALKEAFRKPKKEDYVDLIALLYELAEKARKE--GLLALEAL-ADEIEDPFIK---DGLRL-----IVDGN-DPEEIEA 127 (266)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHh--hHHHHHHH-HHhccchHHH---HhHHH-----HhcCC-CHHHHHH
Confidence 334444666565555566666666666654211 11112211 1134555543 11122 23344 7999999
Q ss_pred HHHHHhhhhhhchHHHHHHHH
Q 015854 281 VIAHELGHWKLNHTMYSFIAV 301 (399)
Q Consensus 281 VlAHElGH~~~~h~~~~~~~~ 301 (399)
++=-|+.+..++|..-.-.+.
T Consensus 128 ~me~Ei~~~ee~~~~~a~~~~ 148 (266)
T COG1291 128 LMEEEIETMEERHEKPAHAFT 148 (266)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 999999999888866554444
No 107
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=49.39 E-value=1.5e+02 Score=29.70 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 230 dP~iK~rrR~~~re~~~~~m~~~V~~AdVVItN 262 (349)
T PRK12721 230 DPEIKQKRRELQSEIQSGSLANNVKKSTAVVRN 262 (349)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEc
Confidence 789999988877643 45556788776
No 108
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=48.66 E-value=11 Score=33.72 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.9
Q ss_pred HHHHHHHHhhhhh
Q 015854 278 IVAVIAHELGHWK 290 (399)
Q Consensus 278 l~AVlAHElGH~~ 290 (399)
+.+++.||+||..
T Consensus 7 ~i~i~~HE~gH~~ 19 (192)
T PF02163_consen 7 LISIVLHELGHAL 19 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 4678999999975
No 109
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=47.85 E-value=3e+02 Score=27.56 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 237 dP~iK~rrR~~~re~a~~~m~~~V~~AdVVItN 269 (359)
T PRK05702 237 DPEVKGRIRQLQREMARRRMMAAVPKADVVITN 269 (359)
T ss_pred CHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEEC
Confidence 788999888877653 45556777776
No 110
>PRK09108 type III secretion system protein HrcU; Validated
Probab=47.32 E-value=1.6e+02 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 232 dP~iK~rrRq~~re~a~~~m~~~V~~AdvVItN 264 (353)
T PRK09108 232 DPHIKGERKRLARELAFAPPRQRVARANVVVVN 264 (353)
T ss_pred CHHHHHHHHHHHHHHHHhHHhccCCCCcEEEEC
Confidence 789999888876653 44555777776
No 111
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=46.52 E-value=1.9e+02 Score=28.76 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 229 dP~iK~r~R~~~re~~~~~m~~~V~~AdVVitN 261 (342)
T TIGR01404 229 DPEIKSKRRELHQEILSEQLKSDVKRSTLVVAN 261 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEC
Confidence 788998888877543 45555777776
No 112
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=46.28 E-value=13 Score=33.76 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhh
Q 015854 276 EEIVAVIAHELGHWK 290 (399)
Q Consensus 276 ~El~AVlAHElGH~~ 290 (399)
.+..+++.||+||..
T Consensus 90 ~~~~~~i~HElgHaL 104 (198)
T cd04327 90 PEFSRVVLHEFGHAL 104 (198)
T ss_pred hhHHHHHHHHHHHHh
Confidence 466789999999976
No 113
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=46.24 E-value=13 Score=33.89 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=21.6
Q ss_pred ceEEEcHhHHhhCC------ChHHHHHHHHHHhhhhh
Q 015854 260 KRIVLYDTLIQQCK------NDEEIVAVIAHELGHWK 290 (399)
Q Consensus 260 ~~Ivl~~~Ll~~l~------~~~El~AVlAHElGH~~ 290 (399)
..|.++.+.+.... ..+-+..+++||+||..
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~l 128 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTL 128 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44668777765431 22458899999999975
No 114
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=45.18 E-value=32 Score=35.25 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=30.3
Q ss_pred CCCCCCcceEEEccCCC--------ceEEEcHhHHh-------hCCChHHHHHHHHHHhhhhhhchHH
Q 015854 243 STRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 243 s~~s~~~NA~~~G~~~~--------~~Ivl~~~Ll~-------~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
++..+..+|+..++.++ +.+++.-+.-. .+ +.+|+. .+.||+||.-|....
T Consensus 160 ~R~~K~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL-~~~~v~-tLfHEfGHalH~~ls 225 (422)
T cd06456 160 AREGKRGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALL-THDEVT-TLFHEFGHALHHLLT 225 (422)
T ss_pred CCCCCCCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCcc-CHHHHH-HHHHHHHHHHHHHHh
Confidence 34456788888887432 33344333221 13 556665 588999999876544
No 115
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=45.14 E-value=13 Score=36.86 Aligned_cols=44 Identities=32% Similarity=0.434 Sum_probs=30.7
Q ss_pred cceEEE-ccCCCceEEEcHhHHhhC--CChHHHHHHHHHHhhhh---hhchHHHHHH
Q 015854 249 SNAYMY-GFFKNKRIVLYDTLIQQC--KNDEEIVAVIAHELGHW---KLNHTMYSFI 299 (399)
Q Consensus 249 ~NA~~~-G~~~~~~Ivl~~~Ll~~l--~~~~El~AVlAHElGH~---~~~h~~~~~~ 299 (399)
.-||.| |+. .|.+++.+ .++.|++.+|-||++|- ..+|+..+=-
T Consensus 140 V~AYSTLGwF-------~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FNEs 189 (337)
T PF10023_consen 140 VPAYSTLGWF-------DDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFNES 189 (337)
T ss_pred cccccccccc-------CCcccccccCCCchHHHHHHHHHHhhceeecCCCchhhHH
Confidence 456655 543 45565553 28899999999999995 4777776643
No 116
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=43.67 E-value=14 Score=32.67 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhhh
Q 015854 278 IVAVIAHELGHWK 290 (399)
Q Consensus 278 l~AVlAHElGH~~ 290 (399)
+.+|..||+||..
T Consensus 8 ~i~i~iHE~gH~~ 20 (180)
T cd05709 8 LISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999986
No 117
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=43.63 E-value=2.8e+02 Score=26.02 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 015854 5 YMEAVVGFMILMYFFETYLDLRQHA 29 (399)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~rq~~ 29 (399)
|..++++..++-..+-.....|..|
T Consensus 25 ~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 25 YFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5667788888888888888888888
No 118
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=43.55 E-value=4.7 Score=36.87 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=21.2
Q ss_pred CcceEEEccCC-CceEEEc-HhHHhhCCChHHHHHHHHHHhhhhh
Q 015854 248 HSNAYMYGFFK-NKRIVLY-DTLIQQCKNDEEIVAVIAHELGHWK 290 (399)
Q Consensus 248 ~~NA~~~G~~~-~~~Ivl~-~~Ll~~l~~~~El~AVlAHElGH~~ 290 (399)
..-|++-|.+. .....+. ++ .-....++|||+||.-
T Consensus 115 ~G~A~~ggiC~~~~s~~i~~~~-------~~~~a~~~aHElGH~L 152 (207)
T cd04273 115 LGLAPVGGMCSPSRSCSINEDT-------GLSSAFTIAHELGHVL 152 (207)
T ss_pred eEEeccccCCCCCcceEEEcCC-------CceeEEeeeeechhhc
Confidence 34577777653 3333332 22 1234689999999965
No 119
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=42.90 E-value=15 Score=33.71 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhh
Q 015854 277 EIVAVIAHELGHWK 290 (399)
Q Consensus 277 El~AVlAHElGH~~ 290 (399)
=..+|+.||+||..
T Consensus 37 l~~~v~iHElgH~~ 50 (208)
T cd06161 37 LFLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 45689999999974
No 120
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=42.18 E-value=43 Score=37.64 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHcCCCC--Cc-EEEEeCCCCCCCcceEEEccCCCceEEEc-HhHHhhCCChHHHHHHHHHHhhhhhhc
Q 015854 217 GELREKIEKLASSLKFPL--KK-LFVVDGSTRSSHSNAYMYGFFKNKRIVLY-DTLIQQCKNDEEIVAVIAHELGHWKLN 292 (399)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~--~~-i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~-~~Ll~~l~~~~El~AVlAHElGH~~~~ 292 (399)
.++++.++-..+..|.|. ++ +.-++...-...-|.-.+.+. .+.+... ++.-+. +-+.++.|+|||++|--.|
T Consensus 245 ~~~~~~~~~~e~~fg~~y~l~~~~V~v~~f~~GaMEN~Gl~tf~-~~~ll~~~~~at~~--~~~~~~~viaHElaHqWfG 321 (859)
T COG0308 245 DETKRSIEFYEEYFGLPYALPIDIVAVPDFSAGAMENWGLVTFR-EKYLLADPETATDS--DYENVEEVIAHELAHQWFG 321 (859)
T ss_pred HHHHHHhhhHHHhcCCCCCCcccEEeccCCCCccccccceeEEe-eeEEeeCcccchhH--HHHHHHHHHHHHHhhhccc
Confidence 345666666667778773 32 333332211122333222221 2333333 122221 3467888999999997766
Q ss_pred hHH
Q 015854 293 HTM 295 (399)
Q Consensus 293 h~~ 295 (399)
+..
T Consensus 322 nlV 324 (859)
T COG0308 322 NLV 324 (859)
T ss_pred cee
Confidence 543
No 121
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=42.05 E-value=14 Score=33.24 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=10.4
Q ss_pred HHHHHHHhhhhhh
Q 015854 279 VAVIAHELGHWKL 291 (399)
Q Consensus 279 ~AVlAHElGH~~~ 291 (399)
..|+-||+||.--
T Consensus 10 ~~v~iHElGH~~~ 22 (182)
T cd06163 10 ILIFVHELGHFLV 22 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 4688999999753
No 122
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=41.47 E-value=23 Score=31.36 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.7
Q ss_pred hCCChHHHHHHHHHHhhhhhhchHHH
Q 015854 271 QCKNDEEIVAVIAHELGHWKLNHTMY 296 (399)
Q Consensus 271 ~l~~~~El~AVlAHElGH~~~~h~~~ 296 (399)
++++++|-.++++|++||+...|-.-
T Consensus 125 ~l~~d~e~~s~v~~~lA~Fy~~~r~~ 150 (182)
T PF06861_consen 125 NLLNDHENASLVSHALAHFYLRYRRA 150 (182)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999998887543
No 123
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=40.81 E-value=56 Score=27.46 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 015854 2 VFPYMEAVVGFMILMYFFETYLDLRQHAALKLP 34 (399)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~rq~~~~~~~ 34 (399)
.-||.+.++++..+..++...|.-|+.+.-+++
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnr 64 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRSIQANRNR 64 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 358999999999999999999999999987654
No 124
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=39.20 E-value=22 Score=38.76 Aligned_cols=44 Identities=32% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCcceEEEccCCCceEEEcHhHHhh----------CCChHHHHHHHHHHhhhhhhch
Q 015854 247 SHSNAYMYGFFKNKRIVLYDTLIQQ----------CKNDEEIVAVIAHELGHWKLNH 293 (399)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~~~Ll~~----------l~~~~El~AVlAHElGH~~~~h 293 (399)
...||+-. +.++.|++.-++++. + +-.-+-.|||||++|--..+
T Consensus 480 ~~~na~Y~--~~~N~i~~pa~ilq~P~f~~~~P~~~-nyg~iG~vigHEl~H~FD~~ 533 (687)
T KOG3624|consen 480 AQVNAFYS--PEKNEIVFPAGLLQPPFFDLSYPDYL-NYGGIGFVIGHELTHGFDDQ 533 (687)
T ss_pred ceeecccc--CCCceEEEehhcccCCCCCcccchhh-hhHHHHHHHHHHHhhccccc
Confidence 45666554 346788888888874 3 44568899999999965443
No 125
>COG3305 Predicted membrane protein [Function unknown]
Probab=39.16 E-value=2.4e+02 Score=23.94 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhhccccHHhhhhh
Q 015854 106 LHTLSFLAGVMLWSQLTDLPFSLYSTF 132 (399)
Q Consensus 106 ~~~~~f~~~~~l~~~~~~lPf~~y~~f 132 (399)
|+...+.-.+.++++.+.|||+.|.-+
T Consensus 90 W~~k~W~e~fa~vs~aIyLPfeVy~l~ 116 (152)
T COG3305 90 WLLKRWGEYFAVVSTAIYLPFEVYDLA 116 (152)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 444455556778899999999999776
No 126
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=38.68 E-value=19 Score=33.59 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhh
Q 015854 277 EIVAVIAHELGHWK 290 (399)
Q Consensus 277 El~AVlAHElGH~~ 290 (399)
=..+|+.||+||..
T Consensus 52 l~~~v~iHElgH~~ 65 (227)
T cd06164 52 LFASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 45789999999974
No 127
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=38.38 E-value=24 Score=25.48 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=20.3
Q ss_pred ChhhcccCCHHHHHHHHHHhhhhhh
Q 015854 37 PKTLEGVISQEKFEKSRGYSLDKSH 61 (399)
Q Consensus 37 P~~~~~~~~~~~~~k~~~Y~~~~~~ 61 (399)
|--+.+.+++|+|+|.|.++++...
T Consensus 24 pi~~~Pmm~~eeYk~~Q~~nR~gI~ 48 (58)
T PF15061_consen 24 PIYFRPMMNPEEYKKEQKINRAGIK 48 (58)
T ss_pred hhhcccccChHHHHHHHHHHHhccc
Confidence 5556778999999999999997543
No 128
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=37.59 E-value=24 Score=32.47 Aligned_cols=19 Identities=32% Similarity=0.181 Sum_probs=15.9
Q ss_pred CCChHHHHHHHHHHhhhhhh
Q 015854 272 CKNDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 272 l~~~~El~AVlAHElGH~~~ 291 (399)
| +..-..+|+|||++|.-.
T Consensus 88 L-Prll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 88 L-PRLLTGSILAHELMHAWL 106 (212)
T ss_pred C-CHHHHhhHHHHHHHHHHh
Confidence 5 777789999999999754
No 129
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=37.56 E-value=22 Score=33.71 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhhh
Q 015854 275 DEEIVAVIAHELGH 288 (399)
Q Consensus 275 ~~El~AVlAHElGH 288 (399)
+-|+..|+||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 66899999999999
No 130
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=36.69 E-value=22 Score=38.19 Aligned_cols=29 Identities=41% Similarity=0.360 Sum_probs=20.1
Q ss_pred eEEEcHhHHhhCCChHHHHHHHHHHhhhhhhc
Q 015854 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (399)
Q Consensus 261 ~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~ 292 (399)
..+.+.+++. .+.+...|+|||++|---|
T Consensus 265 ltf~~~~ll~---~d~s~~~viaHElAHqWfG 293 (601)
T TIGR02411 265 LTFATPTLIA---GDRSNVDVIAHELAHSWSG 293 (601)
T ss_pred ceeecccccc---CChhhhhhHHHHHHhhccC
Confidence 3455566653 4455678999999997655
No 131
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=36.26 E-value=8.6 Score=37.16 Aligned_cols=12 Identities=75% Similarity=0.905 Sum_probs=10.4
Q ss_pred HHHHHHHhhhhh
Q 015854 279 VAVIAHELGHWK 290 (399)
Q Consensus 279 ~AVlAHElGH~~ 290 (399)
.+|++||+||.-
T Consensus 166 igv~~HE~gH~l 177 (286)
T TIGR03296 166 VGVIAHELGHDL 177 (286)
T ss_pred eeeeehhhhccc
Confidence 699999999953
No 132
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=36.03 E-value=5.3e+02 Score=27.86 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 493 dP~iK~r~R~~~re~~~~~m~~~V~~AdvVitN 525 (609)
T PRK12772 493 DPQIKAKIKQKQREMAMQRMMQEVPKATVVVTN 525 (609)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEC
Confidence 788999888877654 45555777776
No 133
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=35.79 E-value=4.8e+02 Score=26.43 Aligned_cols=26 Identities=12% Similarity=0.390 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 237 dP~iK~r~Rq~~re~a~~~m~~~V~~AdVVItN 269 (386)
T PRK12468 237 DPHVKGRIRQQQRAMARRRMMVDVPKADVIVTN 269 (386)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEEC
Confidence 788999888777653 45555777776
No 134
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=35.17 E-value=20 Score=34.36 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHHhhhh
Q 015854 274 NDEEIVAVIAHELGHW 289 (399)
Q Consensus 274 ~~~El~AVlAHElGH~ 289 (399)
+.+....|+.||+||-
T Consensus 212 ~~~~~~~v~vHE~GHs 227 (264)
T PF09471_consen 212 DNPSFKQVVVHEFGHS 227 (264)
T ss_dssp TSTTHHHHHHHHHHHH
T ss_pred Ccccccceeeeecccc
Confidence 4447899999999994
No 135
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=35.09 E-value=24 Score=31.80 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhhh
Q 015854 277 EIVAVIAHELGHWK 290 (399)
Q Consensus 277 El~AVlAHElGH~~ 290 (399)
=+.++..||+||..
T Consensus 40 l~~~l~iHElgH~~ 53 (183)
T cd06160 40 LLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 45678899999975
No 136
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=34.61 E-value=23 Score=33.86 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhh
Q 015854 277 EIVAVIAHELGHWK 290 (399)
Q Consensus 277 El~AVlAHElGH~~ 290 (399)
=..+|+.||+||..
T Consensus 117 L~isv~iHElgHa~ 130 (263)
T cd06159 117 LVVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999975
No 137
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=34 Score=37.53 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHH---H-cC--CCCCcEEEEe--CCCCCCCcceEEEccCC-CceEEEcHhHHhhCCChHHHHHHHHHHhh
Q 015854 217 GELREKIEKLAS---S-LK--FPLKKLFVVD--GSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (399)
Q Consensus 217 ~~L~~~i~~l~~---~-~g--~~~~~i~v~d--~s~~s~~~NA~~~G~~~-~~~Ivl~~~Ll~~l~~~~El~AVlAHElG 287 (399)
+++.+.+++..+ . .. .+.+..+++- ....+....||+.|+.. ..+.-+... - .- +....+.|+|||||
T Consensus 256 ~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~-~-~~-~~~~~a~v~Ahelg 332 (716)
T KOG3607|consen 256 EDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKF-H-SD-ILLAFAVVLAHELG 332 (716)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeec-C-cc-cchhHHHHHHHHHH
Confidence 466666666553 1 11 2334444443 23344667888888853 233323111 1 11 46788999999999
Q ss_pred hhh
Q 015854 288 HWK 290 (399)
Q Consensus 288 H~~ 290 (399)
|..
T Consensus 333 H~l 335 (716)
T KOG3607|consen 333 HNL 335 (716)
T ss_pred hhc
Confidence 964
No 138
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=34.21 E-value=23 Score=33.69 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=23.4
Q ss_pred CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhhchHH
Q 015854 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~~h~~ 295 (399)
...|-+.+. +...+...-.+.+.||+|||..+-..
T Consensus 186 ~D~Iq~p~~--~aF~da~~yyaTl~HElghwtgh~~r 220 (316)
T COG4227 186 SDSIQLPPF--EAFRDAINYYATLLHELGHWTGHEAR 220 (316)
T ss_pred cCeeccCCh--hhccchHhHHHHHHHHhccccCchhh
Confidence 344444442 23336778899999999999866443
No 139
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=34.21 E-value=4.3e+02 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHHHc
Q 015854 215 PEGELREKIEKLASSL 230 (399)
Q Consensus 215 ~~~~L~~~i~~l~~~~ 230 (399)
+|++..+++++..++.
T Consensus 210 ~~~~~~~~I~~~i~~~ 225 (299)
T PRK09509 210 LPDEERQEIIDIVTSW 225 (299)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4677888888888764
No 140
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=32.93 E-value=2.4e+02 Score=25.11 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCchhHHHHHHHHHHH
Q 015854 154 KGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASS 229 (399)
Q Consensus 154 k~~~l~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~ 229 (399)
.+.++-.++.+....+-+.+.++....|.=.+.+ +++..+.=....|+|...+|+.+=+....+.++|-=
T Consensus 72 igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG------~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~Ciy 141 (173)
T PF11085_consen 72 IGIVFIGVFSIVAALLYYALLKKFKGPWPGILYG------LAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIY 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH------HHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHH
Confidence 3444444555555556666788876655422222 222222223456788788888877777788888753
No 141
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=32.10 E-value=2.3e+02 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.3
Q ss_pred HHhhhccCccCCchhHHHHHHHHH
Q 015854 204 IAPLFNKFTPLPEGELREKIEKLA 227 (399)
Q Consensus 204 i~plf~~~~pl~~~~L~~~i~~l~ 227 (399)
.+|.-++-+|+.++|.+.+.+..+
T Consensus 118 ~APv~~~~kpi~~~e~~k~lk~~s 141 (184)
T smart00793 118 YAPADTEKQPVIPEKLKKKLKKKS 141 (184)
T ss_pred cCCcccccCCCCCHHHHHHHHHHH
Confidence 468888999999888877665443
No 142
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=32.05 E-value=27 Score=33.65 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhhh
Q 015854 277 EIVAVIAHELGHWKL 291 (399)
Q Consensus 277 El~AVlAHElGH~~~ 291 (399)
=+.+|+.||+||..-
T Consensus 134 l~isvvvHElgHal~ 148 (277)
T cd06162 134 LLISGVVHEMGHGVA 148 (277)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367899999999753
No 143
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=31.46 E-value=1.8e+02 Score=20.83 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=18.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015854 137 RHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175 (399)
Q Consensus 137 ~~g~~~~t~~~~~~d~~k~~~l~~~l~~~l~~~~~~l~~ 175 (399)
..|++. .|+..+.++..++..+..|....+--+++
T Consensus 19 n~G~~~----~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~ 53 (60)
T PF11391_consen 19 NVGFSD----GFFSRWLKAWLIAWPVAFPISLIVAPLVR 53 (60)
T ss_pred HhCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457776 34444445555555555555554444444
No 144
>PRK00523 hypothetical protein; Provisional
Probab=31.44 E-value=77 Score=24.01 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=11.9
Q ss_pred ccCccCCchhHHHHHHHHHHHcCCCC
Q 015854 209 NKFTPLPEGELREKIEKLASSLKFPL 234 (399)
Q Consensus 209 ~~~~pl~~~~L~~~i~~l~~~~g~~~ 234 (399)
.+-.|+++. .|+.+..+.|-++
T Consensus 35 ~~NPpine~----mir~M~~QMGqKP 56 (72)
T PRK00523 35 RENPPITEN----MIRAMYMQMGRKP 56 (72)
T ss_pred HHCcCCCHH----HHHHHHHHhCCCc
Confidence 334455544 4555666666654
No 145
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=30.95 E-value=3e+02 Score=27.79 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHhhhh
Q 015854 274 NDEEIVAVIAHELGHW 289 (399)
Q Consensus 274 ~~~El~AVlAHElGH~ 289 (399)
..|=+-||+|+|+|=+
T Consensus 269 hTDFIfavi~EE~G~i 284 (381)
T COG0772 269 HTDFIFAVIGEEFGFI 284 (381)
T ss_pred ccchhHHHHHHHHHHH
Confidence 7889999999999965
No 146
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=30.78 E-value=8.1 Score=36.05 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEcHhHHhhC-CChHHHHHHHHHHhhhhh-hchHHH
Q 015854 261 RIVLYDTLIQQC-KNDEEIVAVIAHELGHWK-LNHTMY 296 (399)
Q Consensus 261 ~Ivl~~~Ll~~l-~~~~El~AVlAHElGH~~-~~h~~~ 296 (399)
.|++....+..- ..+....-++.||+|||- ..|++.
T Consensus 119 Gvvi~~~~~~~~~~~~~n~g~t~~HEvGH~lGL~HtF~ 156 (225)
T cd04275 119 GVVINPSSLPGGSAAPYNLGDTATHEVGHWLGLYHTFQ 156 (225)
T ss_pred eEEEeccccCCCCcccccccceeEEeccceeeeeeeec
Confidence 455544444322 012355678999999986 345443
No 147
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=29.40 E-value=1.3e+02 Score=31.68 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhh
Q 015854 220 REKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 220 ~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~ 291 (399)
++.-+++++..|++..+-.+ |.| .|+ |.+|++ .+.+-|+...-+. +.-.=..=..||.||-..
T Consensus 210 ~~~~~~~~~~~G~d~~~grl-d~s---~HP--Ft~~~~-~~DvRiTTry~e~--d~~~~l~s~iHE~GHalY 272 (494)
T PF02074_consen 210 KAFSRELLEYLGFDFDRGRL-DES---AHP--FTTGFG-PNDVRITTRYDED--DFLSALFSTIHETGHALY 272 (494)
T ss_dssp HHHHHHHHHHHT--GCGEEE-EE----SS---EEEEEE-TTEEEEEE--BTT--BTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceEE-ecC---CCC--CCCCCC-CCceeeecccccc--cHHHHHHHHHHHHHHHHH
Confidence 34556788899999887665 432 455 456654 3566677664332 222222233599999754
No 148
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=28.87 E-value=37 Score=35.15 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHhhhhhhchH
Q 015854 274 NDEEIVAVIAHELGHWKLNHT 294 (399)
Q Consensus 274 ~~~El~AVlAHElGH~~~~h~ 294 (399)
+.+|+. .|+||+||..|+-.
T Consensus 245 ~~~~v~-TLfHEfGHalH~~l 264 (458)
T cd06457 245 SPHEVE-TLFHEMGHAMHSML 264 (458)
T ss_pred CHHHHH-HHHHHHhHHHHHHH
Confidence 777876 68999999988544
No 149
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=28.69 E-value=88 Score=22.01 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Q 015854 178 GPYLAIYLWAFMFVLSLVMMTLYPV 202 (399)
Q Consensus 178 ~~~~~l~~~~~~~~~~l~~~~~~p~ 202 (399)
.+.||+++....++++++-.+.||.
T Consensus 20 lP~ww~~~f~~tivfa~~Y~~~yp~ 44 (51)
T PF14715_consen 20 LPRWWLWLFYGTIVFAVGYLVLYPG 44 (51)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888888777887777777773
No 150
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=28.36 E-value=2.9e+02 Score=21.56 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=30.8
Q ss_pred hhhhhhhccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015854 130 STFVIEARHGFNKQTI-WLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175 (399)
Q Consensus 130 ~~f~le~~~g~~~~t~-~~~~~d~~k~~~l~~~l~~~l~~~~~~l~~ 175 (399)
+++.+-+.-|+++... +.++.+.+....++.+++.++.........
T Consensus 28 ~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~ 74 (121)
T PF02687_consen 28 REIAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLI 74 (121)
T ss_pred HHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678865554 567777777777787777777766666544
No 151
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=27.76 E-value=18 Score=36.36 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=36.8
Q ss_pred EeCCCCCCCcceEEE----ccCCCceEEEcHhHH---hhCCChHHHHHHHHHHhhhhhhchHHH
Q 015854 240 VDGSTRSSHSNAYMY----GFFKNKRIVLYDTLI---QQCKNDEEIVAVIAHELGHWKLNHTMY 296 (399)
Q Consensus 240 ~d~s~~s~~~NA~~~----G~~~~~~Ivl~~~Ll---~~l~~~~El~AVlAHElGH~~~~h~~~ 296 (399)
.+....+..-||.+. |.++.-+.+++++-- -.- +-+.=..|++||.||-......-
T Consensus 141 a~aQDgsg~NNAnf~TPpDG~~prMqMylw~~~~~~~p~r-Dg~~D~~Ii~HEy~HGiSnRLvg 203 (378)
T PF02128_consen 141 AEAQDGSGTNNANFATPPDGQPPRMQMYLWTPSTPASPNR-DGDFDNGIIAHEYGHGISNRLVG 203 (378)
T ss_pred EEeccCCCcCCceeecCCCCCCceeeEEEecCCCCcCCCC-CcccccCeeEEeecccccccccC
Confidence 333333567788876 444567788887644 222 44556789999999987765544
No 152
>PRK08156 type III secretion system protein SpaS; Validated
Probab=27.34 E-value=6.5e+02 Score=25.28 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 225 dP~iK~r~R~~~re~a~~rm~~~Vp~AdVVItN 257 (361)
T PRK08156 225 NPEIKSKRREAHQEILSEQVKSDIRNSRLIVAN 257 (361)
T ss_pred CHHHHHHHHHHHHHHHHhHHhccCCCCcEEEEC
Confidence 788999888777654 45556788776
No 153
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=27.15 E-value=4.4e+02 Score=24.93 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 015854 167 VSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTP 213 (399)
Q Consensus 167 ~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~p~~i~plf~~~~p 213 (399)
+.+.+....+.+...++...+.. ++.++.....-..+.+.+.+.+|
T Consensus 60 l~~~~~~~~r~~~k~~l~l~~~l-~~~i~~~~~~k~~iK~~~~epRP 105 (244)
T PRK10699 60 LCGWFLWCLRFRLKAALVLFAIL-AAAILVGQGVKSWIKERVQEPRP 105 (244)
T ss_pred HHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCc
Confidence 33344344455556555544332 33333333335678888888888
No 154
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=27.12 E-value=1.4e+02 Score=28.66 Aligned_cols=27 Identities=33% Similarity=0.641 Sum_probs=16.5
Q ss_pred CccCCchhHHHHHH----HHHHHcCCCCCcEEEE
Q 015854 211 FTPLPEGELREKIE----KLASSLKFPLKKLFVV 240 (399)
Q Consensus 211 ~~pl~~~~L~~~i~----~l~~~~g~~~~~i~v~ 240 (399)
.+|. |+++.++ ++.+|.|++..+.|+-
T Consensus 226 mtP~---el~q~ies~~~~~v~k~~f~~~~~yvA 256 (314)
T COG3965 226 MTPN---ELQQSIESHAHEIVEKYGFPSYHVYVA 256 (314)
T ss_pred cCcH---HHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 4554 5555554 5566778887666643
No 155
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.96 E-value=68 Score=31.88 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=42.8
Q ss_pred hhccCccCCchhHHHHHHHHH----HHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHH
Q 015854 207 LFNKFTPLPEGELREKIEKLA----SSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVI 282 (399)
Q Consensus 207 lf~~~~pl~~~~L~~~i~~l~----~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVl 282 (399)
+..+-++.+++|+....+.=+ ++.+- .-++|.-+. .+-..-|.+-|- .-+++.|....+ + +++++.+++
T Consensus 178 L~~~~k~~e~~E~~~~~qa~~~~v~k~~e~-~i~~~~~~~--~g~~Ara~v~~d-~pp~lli~~~t~--~-~~~~V~~Ll 250 (434)
T COG3930 178 LKDEPKTLEAKEVVPILQADLNTVFKEEEE-MIRVYESDT--AGFVARAEVRDD-LPPTLLIRRDTL--M-EERRVRALL 250 (434)
T ss_pred HhhCCccccccccchHHHHHHHHHHHHhhh-eeeeeecCc--cchhhhHhhcCC-CCcceeehhhhh--c-CHHHHHHHH
Confidence 345666777888755544332 22211 224555442 122344444442 124677766654 5 899999999
Q ss_pred HHHhhh
Q 015854 283 AHELGH 288 (399)
Q Consensus 283 AHElGH 288 (399)
.||+|-
T Consensus 251 ~HEigV 256 (434)
T COG3930 251 SHEIGV 256 (434)
T ss_pred Hhhhhe
Confidence 999994
No 156
>PRK11767 SpoVR family protein; Provisional
Probab=26.95 E-value=68 Score=33.45 Aligned_cols=75 Identities=24% Similarity=0.276 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHcCCCC--CcEEEEeCCCCCCCcceEEE-ccC------------------------CC-ceEEEcHh--
Q 015854 218 ELREKIEKLASSLKFPL--KKLFVVDGSTRSSHSNAYMY-GFF------------------------KN-KRIVLYDT-- 267 (399)
Q Consensus 218 ~L~~~i~~l~~~~g~~~--~~i~v~d~s~~s~~~NA~~~-G~~------------------------~~-~~Ivl~~~-- 267 (399)
+..++|+++|++.|+.. .++-|++.. ...+|++. |+| +. --|||++.
T Consensus 19 ~~~~~I~~iA~~~GLD~yp~~~EIi~~e---qml~~~as~GmP~rY~HWsfGk~y~~~~~~Y~~gl~glaYEiVINSnPc 95 (498)
T PRK11767 19 RYLDEIERVAKEYGLDTYPNQIEVITAE---QMMDAYSSVGMPINYRHWSFGKHFIETEQLYRRGQMGLAYEIVINSNPC 95 (498)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEECHH---HHHHHHHhcCCCCCCCcccccHHHHHHHHHHhcCCCCCceEEEecCchH
Confidence 34678889999999873 355555532 13333332 221 11 23677665
Q ss_pred ---HHhhCCChHHHHHHHHH-Hhhhh---hhchHHH
Q 015854 268 ---LIQQCKNDEEIVAVIAH-ELGHW---KLNHTMY 296 (399)
Q Consensus 268 ---Ll~~l~~~~El~AVlAH-ElGH~---~~~h~~~ 296 (399)
|++.- |.-.=+-|+|| ++||. ||+...+
T Consensus 96 iAyLme~N-tl~~q~LViAHv~yGHndFFKNN~~F~ 130 (498)
T PRK11767 96 IAYLMEEN-TMTMQALVIAHACYGHNSFFKNNYLFR 130 (498)
T ss_pred HHHHhccC-cHHHHHHHHHHHHHhhhhhhhccHHhh
Confidence 55555 66778899999 79994 4554444
No 157
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=26.47 E-value=1.3e+02 Score=25.86 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=25.3
Q ss_pred CcceEEEccCCCceEEEcHhHHhhC-CChHHHHHHHHHHhhhh
Q 015854 248 HSNAYMYGFFKNKRIVLYDTLIQQC-KNDEEIVAVIAHELGHW 289 (399)
Q Consensus 248 ~~NA~~~G~~~~~~Ivl~~~Ll~~l-~~~~El~AVlAHElGH~ 289 (399)
..-|++..-.+...|.|-....+.- ...+--+++|.||+.|+
T Consensus 65 ~~~a~~~~~~~~~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 65 NTYAYVYPDSPTYTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp SSSEEE-TTST-TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred ceEEEEECCCCceEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 3444444322335799988877631 14577899999999994
No 158
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.32 E-value=2.3e+02 Score=21.35 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 015854 9 VVGFMILMYFFETYLDLRQHAALKLPKLP 37 (399)
Q Consensus 9 ~~~~~~~~~~~~~~l~~rq~~~~~~~~~P 37 (399)
+.+.+++..+...|+..||.++.-+.++|
T Consensus 10 ivl~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 10 IVLALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33445555667788999999988777766
No 159
>PHA02564 V virion protein; Provisional
Probab=26.18 E-value=1e+02 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=24.8
Q ss_pred hhhccCccCCchhHHHHHHHHHHHcCCCCCc
Q 015854 206 PLFNKFTPLPEGELREKIEKLASSLKFPLKK 236 (399)
Q Consensus 206 plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~ 236 (399)
-+..+..|-.|.+-...++.+|+++|+++.+
T Consensus 71 ~iI~rwAP~~ENnT~aYi~~Vs~~~GV~~~~ 101 (141)
T PHA02564 71 SLIARWAPSNENDTRAYATAVANAMGVPPQA 101 (141)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHCCCCCC
Confidence 3456788888888889999999999998543
No 160
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.93 E-value=45 Score=31.58 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=21.8
Q ss_pred CceEEEcHhHHhhCCChHHHHHHHHHHhhhhhh
Q 015854 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~ 291 (399)
.+.|+++-+ ... |..++.|++|||.-|..+
T Consensus 124 ~~ki~l~l~--p~~-~~~~v~aliaHE~HH~~R 153 (280)
T COG5504 124 PGKIMLWLV--PSS-TITSVPALIAHEYHHNCR 153 (280)
T ss_pred CceEEEEEe--cCC-CccchHHHHHHHHHhhhe
Confidence 355665543 225 889999999999999764
No 161
>PRK00523 hypothetical protein; Provisional
Probab=25.32 E-value=2.4e+02 Score=21.38 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 015854 8 AVVGFMILMYFFETYLDLRQHAALKLPKLP 37 (399)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~rq~~~~~~~~~P 37 (399)
++++.+++..+...|+..|+.+++-+.++|
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~~NPp 39 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 334456666677789999999987766666
No 162
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.24 E-value=1.9e+02 Score=21.81 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=13.7
Q ss_pred HhhhccCccCCchhHHHHHHHHHHHcCCCC
Q 015854 205 APLFNKFTPLPEGELREKIEKLASSLKFPL 234 (399)
Q Consensus 205 ~plf~~~~pl~~~~L~~~i~~l~~~~g~~~ 234 (399)
...+.+-.|+.++.++. +..+.|.++
T Consensus 30 ~k~lk~NPpine~~iR~----M~~qmGqKp 55 (71)
T COG3763 30 KKQLKDNPPINEEMIRM----MMAQMGQKP 55 (71)
T ss_pred HHHHhhCCCCCHHHHHH----HHHHhCCCc
Confidence 33445556666555444 445556554
No 163
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=24.69 E-value=22 Score=38.15 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=23.9
Q ss_pred CceEEEcHhHHhh------CCChHHHHHHHHHHhhhh
Q 015854 259 NKRIVLYDTLIQQ------CKNDEEIVAVIAHELGHW 289 (399)
Q Consensus 259 ~~~Ivl~~~Ll~~------l~~~~El~AVlAHElGH~ 289 (399)
++...|+.|+... . .+.|..-++|||+||-
T Consensus 368 G~~~sLNtGi~T~~NYg~~V-p~kvs~lt~AHEiGHN 403 (764)
T KOG3658|consen 368 GKKRSLNTGISTSVNYGKRV-PTKVSDLTLAHEIGHN 403 (764)
T ss_pred cceEEeecceeeeeecCCcc-Ccchhheeehhhhccc
Confidence 4677888887643 3 6789999999999994
No 164
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=24.64 E-value=3.6e+02 Score=21.42 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=23.5
Q ss_pred hhhhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcC
Q 015854 130 STFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIII-IVQKGG 178 (399)
Q Consensus 130 ~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~~l~~~l~~~~~~-l~~~~~ 178 (399)
-+|.+.+++=|+++..... .++.....+..+++.++-.+..+ +.+..+
T Consensus 42 ~~f~ln~~~tF~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 90 (117)
T PF04138_consen 42 FNFILNRRFTFRSRGRSSR-WRQFLRFFVVYLLGLLLNTLILWLLVDWLG 90 (117)
T ss_pred HHHHHHHHHhccCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556677777766665544 33333333334444444444433 344433
No 165
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.46 E-value=5.8e+02 Score=23.79 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHh
Q 015854 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHEL 286 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHEl 286 (399)
.+.-...++++-+ |...++=.-+| .+-+|-.-+.|+.+-|.+.+| +..-+.-.++-|=
T Consensus 87 pGAa~avL~~lr~--~W~~~~pVa~n-----r~qD~V~R~vGrpGVvLVgEG------~~~Rv~~Ll~~E~ 144 (224)
T PF13829_consen 87 PGAAGAVLDNLRR--GWRVTEPVAVN-----RTQDAVHRVVGRPGVVLVGEG------PPSRVKKLLAQEK 144 (224)
T ss_pred CchHHHHHHhhcC--CcccCCceeec-----CccceEEEecCCCcEEEEecC------CHHHHHHHHHHHH
Confidence 4666667776655 44433322233 245576667777788888888 6666677777664
No 166
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=24.45 E-value=34 Score=30.79 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhh
Q 015854 279 VAVIAHELGHWK 290 (399)
Q Consensus 279 ~AVlAHElGH~~ 290 (399)
.+++.||+||..
T Consensus 78 ~G~i~HEl~HaL 89 (182)
T cd04283 78 KGIIQHELLHAL 89 (182)
T ss_pred cchHHHHHHHHh
Confidence 589999999975
No 167
>PF15639 Tox-MPTase3: Metallopeptidase toxin 3
Probab=24.26 E-value=64 Score=27.24 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=35.7
Q ss_pred CcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHH---------HHHHHHHHhhhhhhchH
Q 015854 235 KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEE---------IVAVIAHELGHWKLNHT 294 (399)
Q Consensus 235 ~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~E---------l~AVlAHElGH~~~~h~ 294 (399)
|.|.|.... ..+.--.+++..++..|-|...++++++...+ +.+-+-||+-||-+.|.
T Consensus 50 P~IkI~~~~--~~~A~G~t~p~~~~~~i~I~~~lV~~~Ek~~~~~r~~~~~~v~~TlLHEliHw~~~q~ 116 (135)
T PF15639_consen 50 PYIKITPLV--GGTAYGYTTPDDGSQVIRIDGDLVNMFEKGPGERRAGNVYLVGSTLLHELIHWGDDQN 116 (135)
T ss_pred CEEEEeecc--cceeeeeecCCCCCcEEEeeHHHhhhhhcCCcccccceEEEeehHHHHHHHHhcchhc
Confidence 456655431 11222223333356778899999988733232 56778999999987653
No 168
>PRK10911 oligopeptidase A; Provisional
Probab=24.21 E-value=48 Score=36.22 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHhhhhhhchHH
Q 015854 274 NDEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 274 ~~~El~AVlAHElGH~~~~h~~ 295 (399)
+.+|+. .|.||+||..|+..-
T Consensus 460 ~~~~v~-tlfHEfGHalH~~ls 480 (680)
T PRK10911 460 THDEVI-TLFHEFGHGLHHMLT 480 (680)
T ss_pred CHHHHH-HHHHHHhHHHHHHHh
Confidence 557876 789999999875543
No 169
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=24.14 E-value=58 Score=32.71 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHhhhhhhc
Q 015854 274 NDEEIVAVIAHELGHWKLN 292 (399)
Q Consensus 274 ~~~El~AVlAHElGH~~~~ 292 (399)
..+...+.||||+-|..|-
T Consensus 135 ~~~~~~sTlAHEfQHmInf 153 (366)
T PF10460_consen 135 GPDTVYSTLAHEFQHMINF 153 (366)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3688999999999998854
No 170
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.04 E-value=96 Score=30.69 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCCCceEEEcHhHHhhCCChHHHHHHHHHHhhhhhh
Q 015854 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (399)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~~~ 291 (399)
+.+-+.++++.++.|+..+++..-- -.++.. .|.|-++++ + +++|++.-+-||.+|+.-
T Consensus 58 ~av~~~Lk~ala~~gi~~k~aa~AV------P~s~ai-----tk~i~vp~~----l-de~eL~~~V~~ea~~y~P 116 (354)
T COG4972 58 DAVASALKRALAKLGIKSKNAATAV------PGSAAI-----TKTIPVPDE----L-DEKELEDQVESEASRYIP 116 (354)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhc------Ccccee-----eEEeccCCc----c-cHHHHHHHHHHHHhhcCC
Confidence 5677899999999999876654311 011111 355666665 5 999999999999999864
No 171
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=24.02 E-value=35 Score=31.23 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhh
Q 015854 279 VAVIAHELGHWK 290 (399)
Q Consensus 279 ~AVlAHElGH~~ 290 (399)
.+++.||++|..
T Consensus 88 ~Gti~HEl~HaL 99 (200)
T cd04281 88 FGIVVHELGHVI 99 (200)
T ss_pred CchHHHHHHHHh
Confidence 589999999975
No 172
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=24.02 E-value=45 Score=30.10 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHcCCCC------CcEEEEeCCCCCCCcceEEEccC-CCceEEEcHhHHhhCCChHHHHHHHHHHhhhh
Q 015854 217 GELREKIEKLASSLKFPL------KKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (399)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~------~~i~v~d~s~~s~~~NA~~~G~~-~~~~Ivl~~~Ll~~l~~~~El~AVlAHElGH~ 289 (399)
..+++.++.+.+...+.. ...++.-.+ ....--..|.. ....|.|.+ .+ .-.+++.||+||.
T Consensus 22 ~~I~~Am~~~e~~TcI~F~~~~~~~~~~i~~~~---~~gC~S~vG~~~g~q~i~l~~----~c----~~~~~i~HEl~Ha 90 (191)
T PF01400_consen 22 QRIRKAMDEWEKNTCIRFVERTENEDDYISFSN---GSGCWSYVGRQGGEQTINLGD----GC----FSVGTILHELGHA 90 (191)
T ss_dssp HHHHHHHHHHHHHSSEEEEE-SSSSSSEEEEES---SSSEEEESS--SSEEEEEE-T----TC-----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCceEEEeec---CccccchhhhcCcceeEEecc----ee----CCccchHHHHHHH
Confidence 456777777777765431 112222111 22333344542 233444542 23 2357999999997
Q ss_pred h
Q 015854 290 K 290 (399)
Q Consensus 290 ~ 290 (399)
.
T Consensus 91 L 91 (191)
T PF01400_consen 91 L 91 (191)
T ss_dssp H
T ss_pred H
Confidence 5
No 173
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=23.95 E-value=47 Score=29.74 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhh
Q 015854 278 IVAVIAHELGHWK 290 (399)
Q Consensus 278 l~AVlAHElGH~~ 290 (399)
+.++..||+||-.
T Consensus 9 ~~~i~~HE~aHa~ 21 (181)
T cd06158 9 LLAITLHEFAHAY 21 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4588999999976
No 174
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=23.76 E-value=4.8e+02 Score=25.30 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHhhccccHHhhhhh
Q 015854 104 EILHTLSFLAGVMLWSQLTDLPFSLYSTF 132 (399)
Q Consensus 104 ~~~~~~~f~~~~~l~~~~~~lPf~~y~~f 132 (399)
-+++++...++.+++.-++..|..||-.-
T Consensus 67 v~~~Sl~iA~~~T~~~lligyP~Ay~la~ 95 (287)
T COG1176 67 VLLRSLWIAALVTLICLLLGYPVAYFLAR 95 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888888889999999999999988553
No 175
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=23.16 E-value=4.4e+02 Score=24.52 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhhccccHHhhhhhhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh---HHH
Q 015854 107 HTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY---LAI 183 (399)
Q Consensus 107 ~~~~f~~~~~l~~~~~~lPf~~y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~~l~~~l~~~~~~l~~~~~~~---~~l 183 (399)
+.+.--+-.+.+++++.+|....-.|.+.++.+. .+..+-+++.--++..|.+.+.+.++-..++- -++
T Consensus 7 ~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~--------~k~ll~~lv~LPLVLPPtV~G~~LLi~fgr~g~iG~~l 78 (225)
T COG4149 7 TALLLSLKVALISTLLLLPLGIALAYLLARRRFR--------GKSLLESLVLLPLVLPPVVLGFLLLVLFGRNGFIGQFL 78 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--------cchHHHHHHHccccCCchHHHHHHHHHHcCcCchHHHH
Confidence 3333345566777777888888788888776553 23333333333334444444444443322211 122
Q ss_pred HHHH-HHH------HHHHHHHHHHHHHHHhhhccCccCCchhHHHHHHHHHHHcCCCCCcE
Q 015854 184 YLWA-FMF------VLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKL 237 (399)
Q Consensus 184 ~~~~-~~~------~~~l~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i 237 (399)
+-|. ..+ ++.--..+..|.+..|+-+.++-++ +++++-++..|-..-++
T Consensus 79 ~~~~g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id-----~~le~aA~tlGas~~~v 134 (225)
T COG4149 79 EDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAID-----RELEEAARTLGASRWEV 134 (225)
T ss_pred HHHcCCcEEEeeHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hhHHHHHHHcCCChhhh
Confidence 2211 111 1111234456877888777666553 34566677777664444
No 176
>PRK01844 hypothetical protein; Provisional
Probab=22.96 E-value=2.8e+02 Score=21.06 Aligned_cols=29 Identities=7% Similarity=-0.030 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 015854 9 VVGFMILMYFFETYLDLRQHAALKLPKLP 37 (399)
Q Consensus 9 ~~~~~~~~~~~~~~l~~rq~~~~~~~~~P 37 (399)
.++.+++..+...|+..|+.+++-+.++|
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34556666677789999999887766666
No 177
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=49 Score=37.29 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhhhhhchHH
Q 015854 275 DEEIVAVIAHELGHWKLNHTM 295 (399)
Q Consensus 275 ~~El~AVlAHElGH~~~~h~~ 295 (399)
.+.++-|+|||++|---|...
T Consensus 321 k~~va~vIaHElAHQWFGNLV 341 (882)
T KOG1046|consen 321 KQRVAEVIAHELAHQWFGNLV 341 (882)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 567999999999997766543
No 178
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=21.85 E-value=44 Score=32.85 Aligned_cols=11 Identities=64% Similarity=0.794 Sum_probs=9.3
Q ss_pred HHHHHHhhhhh
Q 015854 280 AVIAHELGHWK 290 (399)
Q Consensus 280 AVlAHElGH~~ 290 (399)
+++.||+||=.
T Consensus 152 ~~~~HElgHN~ 162 (314)
T PF05548_consen 152 ATIMHELGHNL 162 (314)
T ss_pred HHHHHHhhhhc
Confidence 59999999943
No 179
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=21.84 E-value=2.5e+02 Score=22.85 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.2
Q ss_pred CCCChhhcccCCHHHHHHHHH
Q 015854 34 PKLPKTLEGVISQEKFEKSRG 54 (399)
Q Consensus 34 ~~~P~~~~~~~~~~~~~k~~~ 54 (399)
+..|.+|.+++++++|++.-+
T Consensus 20 ~~~P~~L~~~is~~ef~~iI~ 40 (118)
T PF10256_consen 20 TEYPGELSGYISPEEFEEIIN 40 (118)
T ss_pred ccCCHhhcCCCCHHHHHHHHH
Confidence 468999999999999998744
No 180
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=5e+02 Score=22.86 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH-HHHHHHHHH
Q 015854 160 IVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLS-LVMMTLYPV 202 (399)
Q Consensus 160 ~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~-l~~~~~~p~ 202 (399)
.++..++..++.+..-..-+.|+.+..+..+++. ++..++.|.
T Consensus 27 l~Ll~av~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~ 70 (161)
T COG3402 27 LVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQ 70 (161)
T ss_pred HHHHHHHHHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 3444445554444444334556665555444433 344445553
No 181
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=20.92 E-value=5e+02 Score=21.69 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCchhHHHHH
Q 015854 144 TIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKI 223 (399)
Q Consensus 144 t~~~~~~d~~k~~~l~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~p~~i~plf~~~~pl~~~~L~~~i 223 (399)
|-.+...-...+.++++++++|+..+.- ||......+++..++..++.+.+++++. +=+ +|.-++..+
T Consensus 22 T~~El~~~a~~~~~~g~~~gl~la~~~g---------~~a~~pt~~ll~~~~~v~~gg~~l~rlK-RGK--P~~yl~r~l 89 (121)
T PF11990_consen 22 TADELGLAAGVGFVAGLVVGLPLALLTG---------WWAMIPTGALLGPILGVFVGGKLLARLK-RGK--PEGYLYRRL 89 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHH-cCC--chhHHHHHH
Confidence 3334444444455555555555444322 2322223333334455666666666653 233 367899999
Q ss_pred HHHHHHcC-CCC
Q 015854 224 EKLASSLK-FPL 234 (399)
Q Consensus 224 ~~l~~~~g-~~~ 234 (399)
+...++.| +..
T Consensus 90 ~~~l~~~g~l~~ 101 (121)
T PF11990_consen 90 QWRLARRGPLGG 101 (121)
T ss_pred HHHHHHhcccCC
Confidence 98888877 543
No 182
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=20.83 E-value=47 Score=33.95 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhh
Q 015854 279 VAVIAHELGHWK 290 (399)
Q Consensus 279 ~AVlAHElGH~~ 290 (399)
..|+-||+||+-
T Consensus 15 ~~v~~HE~gH~~ 26 (420)
T TIGR00054 15 VLIFVHELGHFL 26 (420)
T ss_pred HHHHHHhHHHHH
Confidence 357889999974
No 183
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.81 E-value=7.9e+02 Score=26.64 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHc--------CCCCCcEEEEe
Q 015854 216 EGELREKIEKLASSL--------KFPLKKLFVVD 241 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~--------g~~~~~i~v~d 241 (399)
||+++.+++++.++. ++|..++.+.|
T Consensus 528 DPeIKaRRRqlqREmar~rRMm~~VpkADVVITN 561 (646)
T PRK12773 528 DRSLQARRRQLARDMMNKRKMLAKVPEADVVITN 561 (646)
T ss_pred CHHHHHHHHHHHHHHHhhcchhhcCCCCcEEEEC
Confidence 788888887655432 44555777776
No 184
>PRK01622 OxaA-like protein precursor; Validated
Probab=20.47 E-value=7.3e+02 Score=23.44 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCCC
Q 015854 219 LREKIEKLASSLKFPL 234 (399)
Q Consensus 219 L~~~i~~l~~~~g~~~ 234 (399)
++++.+++.++.|+++
T Consensus 119 ~~~e~~~Lyk~~gi~P 134 (256)
T PRK01622 119 YQKEMMELYKSGNINP 134 (256)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 5667778888888864
No 185
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=20.20 E-value=3.4e+02 Score=23.46 Aligned_cols=73 Identities=10% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCcceEEEccCC--CceEEEcH----hHHhhCCChHHHHHHHHHHhh
Q 015854 214 LPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK--NKRIVLYD----TLIQQCKNDEEIVAVIAHELG 287 (399)
Q Consensus 214 l~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~~s~~~NA~~~G~~~--~~~Ivl~~----~Ll~~l~~~~El~AVlAHElG 287 (399)
.+|+++...+.+.|++.+ + +.+.|+. ...|.++...-+ .-.|.|+. ..+.+. =.++++.++-+++|
T Consensus 78 T~d~e~N~~i~~~a~~~~-~---vn~~d~~---~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~-lr~~ie~~l~~~~~ 149 (157)
T PRK06719 78 TNQHAVNMMVKQAAHDFQ-W---VNVVSDG---TESSFHTPGVIRNDEYVVTISTSGKDPSFTKR-LKQELTSILPKLIK 149 (157)
T ss_pred CCCHHHHHHHHHHHHHCC-c---EEECCCC---CcCcEEeeeEEEECCeEEEEECCCcChHHHHH-HHHHHHHHhhHHHH
Confidence 357899999999998742 2 3455543 235555543321 23344542 233333 38999999999999
Q ss_pred hhhhchH
Q 015854 288 HWKLNHT 294 (399)
Q Consensus 288 H~~~~h~ 294 (399)
++...|-
T Consensus 150 ~~a~~~~ 156 (157)
T PRK06719 150 KISRTHK 156 (157)
T ss_pred HHHhhcc
Confidence 9988873
No 186
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=20.20 E-value=98 Score=20.86 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHcCCCCCc
Q 015854 216 EGELREKIEKLASSLKFPLKK 236 (399)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~ 236 (399)
++++.+.+++++++.|+|..+
T Consensus 10 ~~el~~~L~~ls~~t~i~~S~ 30 (44)
T PF12651_consen 10 DKELYEKLKELSEETGIPKSK 30 (44)
T ss_pred CHHHHHHHHHHHHHHCCCHHH
Confidence 689999999999999998543
Done!