BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015859
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDN|A Chain A, Crystal Structure Of The Hmg-Coa Lyase From Brucella
           Melitensis, Northeast Structural Genomics Target Lr35.
 pdb|1YDN|B Chain B, Crystal Structure Of The Hmg-Coa Lyase From Brucella
           Melitensis, Northeast Structural Genomics Target Lr35.
 pdb|1YDN|C Chain C, Crystal Structure Of The Hmg-Coa Lyase From Brucella
           Melitensis, Northeast Structural Genomics Target Lr35.
 pdb|1YDN|D Chain D, Crystal Structure Of The Hmg-Coa Lyase From Brucella
           Melitensis, Northeast Structural Genomics Target Lr35
          Length = 295

 Score = 32.0 bits (71), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 232 DTRELW------DGLTLPEIMPNSKGAEKGSDQFWKLLSKPMDNKRGGSGS-------EM 278
           D+RE+       DG+    ++PN KG E  +      ++  +    G S +       E 
Sbjct: 59  DSREVXAGIRRADGVRYSVLVPNXKGYEAAAAAHADEIAVFISASEGFSKANINCTIAES 118

Query: 279 LERRNPLALAHFANHPA-KGMVPNVMICPYDFPLT 312
           +ER +P+  A   +  A +G V  V+ CPYD P+T
Sbjct: 119 IERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVT 153


>pdb|2XS6|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Pik3r2
          Length = 214

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)

Query: 66  SLSDQQQQVLDNIHSQIKRFCLSMDEILLLPEKNVPIESSAQSNAAPRRSGLSFAVGPTA 125
           SLSD  Q     +   IK F L++   L+ P      E+SA++     R  L  A GP  
Sbjct: 74  SLSDVDQWDTAALADGIKSFLLALPAPLVTP------EASAEA-----RRALREAAGPVG 122

Query: 126 RPTDSPVVPQTRQLTRTELSQRL 148
              + P +P  R LT   L Q L
Sbjct: 123 PALEPPTLPLHRALTLRFLLQHL 145


>pdb|4EX4|A Chain A, The Structure Of Glcb From Mycobacterium Leprae
 pdb|4EX4|B Chain B, The Structure Of Glcb From Mycobacterium Leprae
          Length = 735

 Score = 28.9 bits (63), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 211 PYLITRYDGTVINAQPWGSGWDTRELWDGLTLPEIMPNSKGAEKGSD 257
           P L  R+     NA+ WGS      L+D L   + +P ++GAEKGS+
Sbjct: 124 PVLNARFALNAANAR-WGS------LYDALYGTDTIPETEGAEKGSE 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,210,206
Number of Sequences: 62578
Number of extensions: 463923
Number of successful extensions: 906
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 6
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)