Query 015861
Match_columns 399
No_of_seqs 433 out of 1909
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 01:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 100.0 1.1E-52 2.4E-57 417.4 13.3 277 25-321 1-283 (344)
2 PHA03096 p28-like protein; Pro 100.0 2.4E-32 5.1E-37 266.7 5.9 139 141-290 130-278 (284)
3 PHA02926 zinc finger-like prot 99.8 2.9E-21 6.2E-26 180.4 5.8 80 184-268 160-239 (242)
4 PHA02929 N1R/p28-like protein; 99.4 6.8E-14 1.5E-18 134.0 5.3 69 188-268 168-236 (238)
5 KOG1040 Polyadenylation factor 99.0 1E-10 2.2E-15 116.7 2.9 54 3-56 76-130 (325)
6 PF13639 zf-RING_2: Ring finge 99.0 2.2E-10 4.9E-15 81.8 2.2 43 196-255 2-44 (44)
7 PLN03208 E3 ubiquitin-protein 98.8 4.8E-09 1E-13 97.4 4.4 64 187-259 11-79 (193)
8 PF15227 zf-C3HC4_4: zinc fing 98.7 5.7E-09 1.2E-13 74.3 2.9 42 197-254 1-42 (42)
9 PF13920 zf-C3HC4_3: Zinc fing 98.7 5.9E-09 1.3E-13 76.5 3.0 49 193-261 1-50 (50)
10 COG5152 Uncharacterized conser 98.6 9.9E-09 2.1E-13 95.0 1.8 102 131-271 141-249 (259)
11 PF13923 zf-C3HC4_2: Zinc fing 98.6 2E-08 4.2E-13 70.0 2.8 39 197-254 1-39 (39)
12 KOG0823 Predicted E3 ubiquitin 98.6 2.6E-08 5.6E-13 94.4 3.4 57 191-264 44-102 (230)
13 PF12678 zf-rbx1: RING-H2 zinc 98.6 3.1E-08 6.8E-13 78.6 3.0 51 193-255 18-73 (73)
14 KOG1492 C3H1-type Zn-finger pr 98.6 2.4E-08 5.1E-13 94.3 2.4 53 4-58 206-259 (377)
15 cd00162 RING RING-finger (Real 98.6 5.8E-08 1.3E-12 67.4 3.6 44 196-257 1-44 (45)
16 KOG2164 Predicted E3 ubiquitin 98.5 5.7E-08 1.2E-12 100.8 4.6 80 187-285 179-261 (513)
17 PF00097 zf-C3HC4: Zinc finger 98.5 6.5E-08 1.4E-12 67.7 3.1 41 197-254 1-41 (41)
18 KOG0320 Predicted E3 ubiquitin 98.5 7.5E-08 1.6E-12 88.0 2.7 48 193-258 130-177 (187)
19 KOG1677 CCCH-type Zn-finger pr 98.5 2E-07 4.3E-12 93.2 5.8 95 5-155 87-202 (332)
20 KOG0317 Predicted E3 ubiquitin 98.4 1.1E-07 2.3E-12 92.7 3.1 48 192-259 237-284 (293)
21 COG5084 YTH1 Cleavage and poly 98.4 3E-07 6.5E-12 90.3 5.7 55 3-57 103-160 (285)
22 PF12861 zf-Apc11: Anaphase-pr 98.4 3E-07 6.5E-12 75.0 3.8 60 193-260 20-83 (85)
23 PF14634 zf-RING_5: zinc-RING 98.4 2.5E-07 5.4E-12 66.2 2.9 44 196-256 1-44 (44)
24 COG5540 RING-finger-containing 98.3 4.3E-07 9.4E-12 89.0 3.7 56 187-258 316-371 (374)
25 TIGR00599 rad18 DNA repair pro 98.3 7E-07 1.5E-11 91.7 5.4 68 191-283 23-90 (397)
26 KOG1677 CCCH-type Zn-finger pr 98.2 8.7E-07 1.9E-11 88.5 3.8 58 2-59 130-205 (332)
27 COG5243 HRD1 HRD ubiquitin lig 98.2 1.4E-06 2.9E-11 87.6 4.2 58 191-260 284-346 (491)
28 smart00504 Ubox Modified RING 98.2 1.8E-06 4E-11 65.4 3.9 46 194-259 1-46 (63)
29 KOG4628 Predicted E3 ubiquitin 98.2 1E-06 2.2E-11 88.8 2.8 50 195-260 230-279 (348)
30 smart00184 RING Ring finger. E 98.1 2.1E-06 4.6E-11 57.4 2.9 39 197-254 1-39 (39)
31 KOG1492 C3H1-type Zn-finger pr 98.1 1.8E-06 3.9E-11 81.8 2.9 54 2-56 231-284 (377)
32 KOG0287 Postreplication repair 98.0 2.8E-06 6.2E-11 84.4 1.8 45 195-259 24-68 (442)
33 KOG1763 Uncharacterized conser 97.9 9.5E-07 2.1E-11 86.2 -2.1 56 3-58 91-193 (343)
34 COG5574 PEX10 RING-finger-cont 97.9 4.4E-06 9.6E-11 80.7 2.4 49 192-259 213-262 (271)
35 TIGR00570 cdk7 CDK-activating 97.9 1.3E-05 2.8E-10 79.7 4.8 53 193-260 2-55 (309)
36 PF00642 zf-CCCH: Zinc finger 97.8 3.5E-06 7.6E-11 54.4 0.1 24 3-26 2-26 (27)
37 KOG0802 E3 ubiquitin ligase [P 97.8 8.3E-06 1.8E-10 87.3 2.5 52 190-256 287-338 (543)
38 PF04564 U-box: U-box domain; 97.8 3.3E-05 7.2E-10 61.1 4.7 66 193-284 3-70 (73)
39 KOG4172 Predicted E3 ubiquitin 97.8 4E-06 8.7E-11 62.7 -0.6 51 192-262 5-57 (62)
40 PF13445 zf-RING_UBOX: RING-ty 97.8 2.1E-05 4.4E-10 56.5 2.9 35 197-237 1-35 (43)
41 smart00356 ZnF_C3H1 zinc finge 97.7 1.7E-05 3.6E-10 50.4 2.1 24 3-26 3-26 (27)
42 KOG1040 Polyadenylation factor 97.7 2.7E-05 5.9E-10 78.1 3.6 56 1-56 102-158 (325)
43 KOG2177 Predicted E3 ubiquitin 97.7 2E-05 4.3E-10 74.0 2.4 69 190-285 9-77 (386)
44 PF11793 FANCL_C: FANCL C-term 97.7 1.2E-05 2.6E-10 63.4 0.7 65 194-259 2-66 (70)
45 PF14835 zf-RING_6: zf-RING of 97.6 1.2E-05 2.7E-10 62.2 0.3 44 194-258 7-50 (65)
46 KOG2494 C3H1-type Zn-finger pr 97.6 2.2E-05 4.8E-10 77.9 1.4 53 5-58 38-96 (331)
47 KOG1813 Predicted E3 ubiquitin 97.6 1.6E-05 3.4E-10 78.0 0.2 95 131-259 186-286 (313)
48 COG5194 APC11 Component of SCF 97.5 6.3E-05 1.4E-09 60.5 2.9 56 195-261 21-83 (88)
49 smart00356 ZnF_C3H1 zinc finge 97.4 0.00012 2.7E-09 46.3 2.5 25 31-55 3-27 (27)
50 PF00642 zf-CCCH: Zinc finger 97.3 2.6E-05 5.7E-10 50.3 -1.1 24 31-54 2-26 (27)
51 COG5432 RAD18 RING-finger-cont 97.3 0.0001 2.2E-09 72.3 2.3 62 195-282 26-88 (391)
52 KOG1493 Anaphase-promoting com 97.3 6.8E-05 1.5E-09 59.8 0.2 59 194-260 20-82 (84)
53 KOG2494 C3H1-type Zn-finger pr 97.2 0.00013 2.8E-09 72.6 1.2 25 32-56 37-62 (331)
54 KOG4791 Uncharacterized conser 97.1 0.00046 1E-08 71.6 3.9 52 5-57 4-56 (667)
55 KOG0804 Cytoplasmic Zn-finger 97.0 0.00018 4E-09 74.1 0.7 49 192-259 173-222 (493)
56 COG5063 CTH1 CCCH-type Zn-fing 97.0 0.0011 2.3E-08 65.6 5.1 53 5-57 231-300 (351)
57 KOG0978 E3 ubiquitin ligase in 96.9 0.00031 6.7E-09 76.5 1.2 46 195-259 644-689 (698)
58 COG5252 Uncharacterized conser 96.9 0.00013 2.7E-09 69.7 -1.7 55 3-57 84-177 (299)
59 KOG0311 Predicted E3 ubiquitin 96.9 0.00014 3.1E-09 73.0 -1.8 48 193-258 42-89 (381)
60 KOG0824 Predicted E3 ubiquitin 96.8 0.00063 1.4E-08 67.2 1.8 48 191-259 4-53 (324)
61 KOG0825 PHD Zn-finger protein 96.7 0.00061 1.3E-08 74.2 1.5 69 195-280 124-199 (1134)
62 COG5084 YTH1 Cleavage and poly 96.6 0.0034 7.5E-08 62.1 5.9 54 4-57 134-191 (285)
63 KOG4791 Uncharacterized conser 96.5 0.00086 1.9E-08 69.6 0.6 53 4-58 32-87 (667)
64 COG5219 Uncharacterized conser 96.4 0.0016 3.5E-08 72.3 2.3 60 189-261 1464-1525(1525)
65 KOG4159 Predicted E3 ubiquitin 96.4 0.0022 4.7E-08 66.3 3.0 75 192-287 82-157 (398)
66 KOG2660 Locus-specific chromos 96.3 0.0018 3.9E-08 64.7 1.7 58 190-266 11-68 (331)
67 KOG1595 CCCH-type Zn-finger pr 96.2 0.0074 1.6E-07 63.7 5.7 54 4-60 236-296 (528)
68 KOG0828 Predicted E3 ubiquitin 96.2 0.0021 4.6E-08 67.1 1.6 55 193-258 570-633 (636)
69 KOG0827 Predicted E3 ubiquitin 96.0 0.0033 7.1E-08 64.1 2.1 50 195-257 5-54 (465)
70 KOG1645 RING-finger-containing 96.0 0.0068 1.5E-07 62.2 4.0 54 194-260 4-57 (463)
71 KOG1595 CCCH-type Zn-finger pr 95.8 0.0082 1.8E-07 63.4 3.9 52 3-57 200-261 (528)
72 KOG0297 TNF receptor-associate 95.8 0.0044 9.5E-08 64.1 1.9 50 191-260 18-68 (391)
73 PF14608 zf-CCCH_2: Zinc finge 95.6 0.0068 1.5E-07 36.0 1.5 18 6-25 1-18 (19)
74 smart00744 RINGv The RING-vari 95.6 0.012 2.7E-07 43.2 3.1 44 196-255 1-49 (49)
75 KOG2333 Uncharacterized conser 95.3 0.007 1.5E-07 63.5 1.1 53 4-56 76-139 (614)
76 KOG2185 Predicted RNA-processi 95.2 0.01 2.2E-07 60.8 2.1 26 32-57 140-165 (486)
77 KOG1952 Transcription factor N 95.1 0.02 4.3E-07 63.4 4.2 62 189-259 186-247 (950)
78 KOG4265 Predicted E3 ubiquitin 94.9 0.017 3.7E-07 58.4 2.8 47 194-260 290-337 (349)
79 KOG2185 Predicted RNA-processi 94.9 0.011 2.3E-07 60.7 1.2 26 4-29 140-165 (486)
80 PF11789 zf-Nse: Zinc-finger o 94.6 0.026 5.6E-07 42.9 2.3 46 191-253 8-53 (57)
81 KOG1734 Predicted RING-contain 94.6 0.0092 2E-07 58.3 -0.2 67 190-267 220-290 (328)
82 KOG2930 SCF ubiquitin ligase, 94.6 0.03 6.5E-07 47.4 2.9 29 220-259 80-108 (114)
83 KOG1002 Nucleotide excision re 94.5 0.016 3.4E-07 61.3 1.4 54 191-259 533-586 (791)
84 KOG1785 Tyrosine kinase negati 94.4 0.017 3.7E-07 59.2 1.4 50 192-259 367-416 (563)
85 PF05883 Baculo_RING: Baculovi 94.4 0.046 9.9E-07 48.5 3.9 47 185-237 16-69 (134)
86 KOG1941 Acetylcholine receptor 94.3 0.016 3.5E-07 59.2 1.0 50 193-256 364-413 (518)
87 KOG1814 Predicted E3 ubiquitin 94.2 0.048 1E-06 56.2 4.0 58 193-259 183-240 (445)
88 PF14608 zf-CCCH_2: Zinc finge 94.0 0.041 8.8E-07 32.7 1.8 19 34-54 1-19 (19)
89 KOG1428 Inhibitor of type V ad 93.9 0.029 6.2E-07 65.0 1.9 89 165-262 3459-3547(3738)
90 KOG1763 Uncharacterized conser 93.8 0.029 6.3E-07 55.5 1.5 25 130-154 91-115 (343)
91 KOG2879 Predicted E3 ubiquitin 93.3 0.061 1.3E-06 52.8 2.8 54 189-259 234-287 (298)
92 COG5222 Uncharacterized conser 92.8 0.23 5E-06 49.5 6.0 68 195-284 275-342 (427)
93 COG5252 Uncharacterized conser 92.8 0.033 7.1E-07 53.6 0.1 25 130-154 84-108 (299)
94 KOG1812 Predicted E3 ubiquitin 92.3 0.088 1.9E-06 54.4 2.6 55 194-259 146-201 (384)
95 PF04641 Rtf2: Rtf2 RING-finge 92.2 0.26 5.5E-06 48.2 5.6 71 191-281 110-182 (260)
96 PF07800 DUF1644: Protein of u 91.6 0.14 3.1E-06 46.6 2.7 13 247-259 79-91 (162)
97 KOG2932 E3 ubiquitin ligase in 90.6 0.1 2.2E-06 52.2 0.8 34 213-259 101-134 (389)
98 PF14570 zf-RING_4: RING/Ubox 90.5 0.27 5.9E-06 36.2 2.8 47 197-258 1-47 (48)
99 KOG3799 Rab3 effector RIM1 and 90.3 0.25 5.5E-06 43.9 3.0 64 192-268 63-127 (169)
100 COG5063 CTH1 CCCH-type Zn-fing 89.9 0.27 5.8E-06 49.1 3.1 57 3-59 273-342 (351)
101 KOG4275 Predicted E3 ubiquitin 89.7 0.041 8.8E-07 54.5 -2.7 42 194-259 300-342 (350)
102 KOG4739 Uncharacterized protei 89.2 0.14 3E-06 49.4 0.6 45 195-259 4-48 (233)
103 KOG2333 Uncharacterized conser 88.7 0.17 3.6E-06 53.5 0.8 25 32-56 76-103 (614)
104 KOG1039 Predicted E3 ubiquitin 88.7 0.16 3.4E-06 51.8 0.6 25 5-29 9-33 (344)
105 COG5152 Uncharacterized conser 88.1 0.18 3.9E-06 47.5 0.5 26 32-57 141-167 (259)
106 PF10272 Tmpp129: Putative tra 87.6 0.39 8.4E-06 49.3 2.6 38 222-259 312-351 (358)
107 PF10650 zf-C3H1: Putative zin 86.2 0.52 1.1E-05 29.5 1.6 20 34-54 2-22 (23)
108 KOG1001 Helicase-like transcri 86.0 0.32 7E-06 53.8 1.1 46 195-259 455-500 (674)
109 KOG4692 Predicted E3 ubiquitin 85.6 0.53 1.2E-05 47.9 2.3 53 190-262 418-470 (489)
110 KOG1571 Predicted E3 ubiquitin 85.4 0.32 6.8E-06 49.5 0.7 49 192-263 303-351 (355)
111 PF10650 zf-C3H1: Putative zin 84.7 0.56 1.2E-05 29.4 1.3 20 5-25 1-21 (23)
112 PF10367 Vps39_2: Vacuolar sor 83.7 0.49 1.1E-05 39.0 1.0 35 190-231 74-108 (109)
113 KOG4185 Predicted E3 ubiquitin 83.7 0.82 1.8E-05 45.0 2.7 52 194-258 3-54 (296)
114 KOG3039 Uncharacterized conser 82.8 1.2 2.5E-05 43.5 3.2 60 189-264 216-277 (303)
115 PF05290 Baculo_IE-1: Baculovi 81.7 2.5 5.5E-05 37.6 4.6 53 191-259 77-132 (140)
116 KOG4362 Transcriptional regula 81.3 0.43 9.4E-06 52.4 -0.3 50 192-258 19-68 (684)
117 COG5236 Uncharacterized conser 81.2 1.4 3.1E-05 44.9 3.3 54 190-261 57-110 (493)
118 KOG3002 Zn finger protein [Gen 81.2 1.2 2.5E-05 44.8 2.7 67 193-296 47-115 (299)
119 PF14447 Prok-RING_4: Prokaryo 80.4 0.86 1.9E-05 34.5 1.1 45 194-260 7-51 (55)
120 PHA02825 LAP/PHD finger-like p 80.4 2.1 4.6E-05 39.1 3.9 60 192-268 6-71 (162)
121 PHA02862 5L protein; Provision 77.9 1.4 3E-05 39.7 1.9 53 194-260 2-54 (156)
122 KOG0826 Predicted E3 ubiquitin 77.6 1.4 3.1E-05 44.5 2.0 46 192-256 298-343 (357)
123 KOG1815 Predicted E3 ubiquitin 77.2 3.2 6.9E-05 43.7 4.6 43 191-241 67-109 (444)
124 PF04423 Rad50_zn_hook: Rad50 75.7 1 2.2E-05 33.4 0.3 29 250-289 22-50 (54)
125 KOG0298 DEAD box-containing he 74.6 1.1 2.3E-05 52.4 0.3 50 189-257 1148-1197(1394)
126 KOG4445 Uncharacterized conser 74.0 1.1 2.5E-05 44.7 0.3 58 191-260 112-187 (368)
127 PF08746 zf-RING-like: RING-li 73.5 3.3 7.1E-05 29.6 2.5 40 197-254 1-43 (43)
128 COG5175 MOT2 Transcriptional r 71.7 3.3 7.1E-05 42.2 2.9 52 193-259 13-64 (480)
129 KOG1813 Predicted E3 ubiquitin 70.8 1.3 2.9E-05 44.1 -0.1 26 32-57 186-212 (313)
130 KOG0153 Predicted RNA-binding 70.3 2.5 5.5E-05 43.0 1.8 28 128-155 158-185 (377)
131 KOG3053 Uncharacterized conser 70.0 3.2 7E-05 40.7 2.3 71 191-269 17-92 (293)
132 PF12906 RINGv: RING-variant d 68.5 3.5 7.6E-05 29.9 1.7 42 197-254 1-47 (47)
133 COG5220 TFB3 Cdk activating ki 67.5 2 4.2E-05 41.9 0.3 55 191-258 7-63 (314)
134 KOG3268 Predicted E3 ubiquitin 66.5 4.8 0.0001 37.6 2.6 64 195-260 166-229 (234)
135 PF14569 zf-UDP: Zinc-binding 65.6 7.5 0.00016 31.5 3.2 62 191-264 6-67 (80)
136 KOG2034 Vacuolar sorting prote 63.1 3.6 7.8E-05 46.5 1.4 36 192-234 815-850 (911)
137 KOG0801 Predicted E3 ubiquitin 62.5 0.55 1.2E-05 43.0 -4.2 62 153-224 138-201 (205)
138 KOG3800 Predicted E3 ubiquitin 61.2 7.4 0.00016 38.8 3.0 49 196-258 2-50 (300)
139 KOG1940 Zn-finger protein [Gen 61.0 6.6 0.00014 39.0 2.6 95 189-313 153-253 (276)
140 TIGR00622 ssl1 transcription f 59.4 5.6 0.00012 34.4 1.6 89 154-255 16-110 (112)
141 KOG0825 PHD Zn-finger protein 57.4 6.8 0.00015 44.0 2.2 57 194-259 96-154 (1134)
142 KOG4367 Predicted Zn-finger pr 57.0 5.5 0.00012 41.9 1.3 35 192-235 2-36 (699)
143 KOG0153 Predicted RNA-binding 56.8 4.9 0.00011 41.0 1.0 23 5-27 162-184 (377)
144 KOG3899 Uncharacterized conser 55.0 6.6 0.00014 39.3 1.5 39 221-259 325-365 (381)
145 KOG3702 Nuclear polyadenylated 53.1 34 0.00073 37.8 6.5 103 5-156 545-647 (681)
146 PF02891 zf-MIZ: MIZ/SP-RING z 50.6 6.2 0.00014 29.0 0.4 48 195-257 3-50 (50)
147 KOG2202 U2 snRNP splicing fact 43.9 10 0.00022 37.3 0.8 21 5-25 153-173 (260)
148 KOG3970 Predicted E3 ubiquitin 42.6 35 0.00076 33.2 4.2 56 194-259 50-105 (299)
149 KOG2807 RNA polymerase II tran 41.4 19 0.00041 36.7 2.3 85 153-255 290-374 (378)
150 KOG1356 Putative transcription 40.1 7.1 0.00015 44.0 -1.0 35 193-234 228-262 (889)
151 KOG0006 E3 ubiquitin-protein l 39.2 20 0.00044 36.4 2.1 42 191-234 312-355 (446)
152 PF03854 zf-P11: P-11 zinc fin 38.6 13 0.00029 27.5 0.5 32 216-258 14-45 (50)
153 KOG3161 Predicted E3 ubiquitin 37.7 15 0.00033 40.5 1.1 36 195-235 12-47 (861)
154 smart00647 IBR In Between Ring 36.9 6.9 0.00015 29.0 -1.2 39 195-234 19-59 (64)
155 PF04710 Pellino: Pellino; In 36.2 12 0.00026 39.0 0.0 41 214-264 303-343 (416)
156 PLN02189 cellulose synthase 34.6 40 0.00087 39.3 3.8 66 192-270 32-97 (1040)
157 PF10571 UPF0547: Uncharacteri 33.4 25 0.00054 22.5 1.2 9 197-205 3-11 (26)
158 PLN02638 cellulose synthase A 32.9 41 0.00089 39.4 3.5 66 192-270 15-80 (1079)
159 KOG2202 U2 snRNP splicing fact 31.8 21 0.00046 35.1 0.9 26 33-58 153-178 (260)
160 PLN02400 cellulose synthase 28.5 42 0.00091 39.3 2.7 68 190-270 32-99 (1085)
161 PLN02436 cellulose synthase A 28.3 59 0.0013 38.2 3.8 63 190-264 32-94 (1094)
162 KOG1100 Predicted E3 ubiquitin 27.7 27 0.00058 33.3 0.8 39 197-259 161-200 (207)
163 PLN02195 cellulose synthase A 27.4 71 0.0015 37.1 4.2 56 192-259 4-59 (977)
164 KOG4430 Topoisomerase I-bindin 26.3 21 0.00045 38.7 -0.2 62 187-264 253-314 (553)
165 PF14353 CpXC: CpXC protein 24.8 48 0.001 28.5 1.8 30 250-279 3-33 (128)
166 PF07975 C1_4: TFIIH C1-like d 23.7 41 0.00089 25.1 1.0 13 218-230 24-36 (51)
167 PF06844 DUF1244: Protein of u 23.5 47 0.001 26.2 1.4 14 224-237 11-24 (68)
168 KOG4185 Predicted E3 ubiquitin 22.8 28 0.0006 34.2 -0.0 55 192-258 205-266 (296)
169 PF13913 zf-C2HC_2: zinc-finge 22.2 80 0.0017 19.8 2.0 22 154-179 3-24 (25)
170 KOG2114 Vacuolar assembly/sort 22.1 1.5E+02 0.0033 34.0 5.3 41 195-257 841-881 (933)
171 KOG1815 Predicted E3 ubiquitin 21.4 92 0.002 32.8 3.5 43 194-237 226-268 (444)
172 KOG3777 Uncharacterized conser 21.2 65 0.0014 34.2 2.3 39 130-170 170-208 (443)
173 PF10497 zf-4CXXC_R1: Zinc-fin 21.1 49 0.0011 28.1 1.2 35 222-258 37-71 (105)
174 PF01485 IBR: IBR domain; Int 20.8 14 0.00029 27.3 -2.1 18 217-234 42-59 (64)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=417.45 Aligned_cols=277 Identities=31% Similarity=0.624 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCcCCCCCCCCCCcccCCC-CCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 015861 25 HDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSS-SSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKT 103 (399)
Q Consensus 25 Hd~~~~~~~vCr~f~~G~C~~G~~C~y~H~~~~~~~~~~s~~-~~~~~~~~s~~~~~~~~~g~~p~~s~~~qp~~~~~~p 103 (399)
||+......||+||++|+|++|+.|||.|+++.........+ .+..+.... ... ..-|... .+.+
T Consensus 1 ~d~~~~~~tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~~~-~~~--~~~~~~~-----------~~~~ 66 (344)
T KOG1039|consen 1 HDLSLSQETICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAASTG-LSQ--SLIWANA-----------VADA 66 (344)
T ss_pred CccccccchhhhhcccccccccceeeeeccCchhhccccccccccccccccc-cch--hhcccch-----------hhcc
Confidence 677665558999999999999999999999995211111100 000000000 000 0000000 0112
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCccCchhccCCCCCCCCCcccCCCCCCcCCcccCCCCChhHHHHHHHHHH-H-
Q 015861 104 AWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE-K- 181 (399)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~C~f~~~G~C~~G~~C~y~Hg~~c~~C~~~~lhp~~~~~~~~h~~~c~-~- 181 (399)
.++......... .+....+....+...++|+|.+.|.|.+|..|.++|++.|++|+.+.+||++..+++.|.+.|. .
T Consensus 67 s~~~s~~~~~~~-~~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~ 145 (344)
T KOG1039|consen 67 SATMSVSSRPVL-TAIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCA 145 (344)
T ss_pred ccccchhcccch-hhhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhccccccc
Confidence 211111110001 1111111222345568899999999999999999999999999999999999999999999883 3
Q ss_pred ---HHHHHHHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 182 ---KQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 182 ---~~~~~~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
..+..++++.+++.+||||||.|.+|+ +++++||||+||.|+||++||++||..+++ ..+++++||+||+.+
T Consensus 146 ~~~~~e~~~a~~~s~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 146 LSSAMERSFALQKSSEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPS 220 (344)
T ss_pred chHhhhhccCcCccccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCcc
Confidence 344568899999999999999999999 899999999999999999999999998886 468899999999999
Q ss_pred ceeecCcccccCchhHHHHHHHHHhhcccCCccccccCCCCCCCCCCceeeccCCCCCccccc
Q 015861 259 YFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHMVKPGSYMWKY 321 (399)
Q Consensus 259 ~~viPs~~wv~~~~eK~~li~~yk~~~~~~~ck~f~~g~g~Cpfg~~C~y~H~~~dg~~~~~~ 321 (399)
.+|+|+.+||..+++|+++|+.|+++|+.++|+||++|.|.||||+.|||+|.+|+|...++.
T Consensus 221 ~~v~pS~~Wv~t~~~k~~li~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~~~~~~ 283 (344)
T KOG1039|consen 221 SFVNPSSFWVETKEEKQKLIEEYEAEMSAKDCKYFSQGLGSCPFGSKCFYKHLLPSGASTDPG 283 (344)
T ss_pred ccccccceeeeecccccccHHHHHHHhhccchhhhcCCCCCCCCCCccccccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999998875
No 2
>PHA03096 p28-like protein; Provisional
Probab=99.97 E-value=2.4e-32 Score=266.72 Aligned_cols=139 Identities=30% Similarity=0.536 Sum_probs=127.3
Q ss_pred CCCCCCCCcccCCCCCCcCCcccCCCCChhHHHHHHHHHHHHHHHHHHHhCcCcccccccccccccCCcccccceeecCC
Q 015861 141 NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSE 220 (399)
Q Consensus 141 ~C~~G~~C~y~Hg~~c~~C~~~~lhp~~~~~~~~h~~~c~~~~~~~~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~ 220 (399)
.|.+|+.|.|+||+.|++||+++|||.|++||.+|.+.|++.|+..... .+|+||||.|++|+ +.+++||+|++
T Consensus 130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~~~-----k~c~ic~e~~~~k~-~~~~~fgil~~ 203 (284)
T PHA03096 130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLLLS-----KICGICLENIKAKY-IIKKYYGILSE 203 (284)
T ss_pred hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHHHH-----hhcccchhhhhhhc-ccccccccccc
Confidence 5899999999999999999999999999999999999999998654332 88999999999998 78999999999
Q ss_pred CCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee----------ecCcccccCchhHHHHHHHHHhhcccCCc
Q 015861 221 CDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV----------IPSVIWYYTPEEKQEIIDSYKSKLKSIDC 290 (399)
Q Consensus 221 C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v----------iPs~~wv~~~~eK~~li~~yk~~~~~~~c 290 (399)
|+|.||+.||+.||..+.. ..+.+.||.||..+.|| |||.+|+.++++|+.|+..||..+++++|
T Consensus 204 c~h~fc~~ci~~wr~~~~~-----~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~~~~K~~l~~~yk~~~~~K~c 278 (284)
T PHA03096 204 IKHEFNIFCIKIWMTESLY-----KETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDDKYDKNLLSFRYKKMHIRKVC 278 (284)
T ss_pred CCcHHHHHHHHHHHHhhhh-----cccCccccchhhHHHHHhhcchhhhccCCchhhhcChHHHHHHHHHHHHhhccccc
Confidence 9999999999999998753 45667778888877788 99999999999999999999999999999
No 3
>PHA02926 zinc finger-like protein; Provisional
Probab=99.83 E-value=2.9e-21 Score=180.37 Aligned_cols=80 Identities=38% Similarity=0.728 Sum_probs=70.9
Q ss_pred HHHHHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 184 ~~~~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
++..+.++|+|.+||||||.+++|+.+++|+||+|++|+|+||+.||++|+++++. .++.++||+||+.+.+|+|
T Consensus 160 ~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~-----~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 160 KYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRE-----TGASDNCPICRTRFRNITM 234 (242)
T ss_pred HHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccc-----cCcCCcCCCCcceeeeecc
Confidence 34567889999999999999999988899999999999999999999999997642 3457899999999999999
Q ss_pred Ccccc
Q 015861 264 SVIWY 268 (399)
Q Consensus 264 s~~wv 268 (399)
|.++.
T Consensus 235 Srf~~ 239 (242)
T PHA02926 235 SKFYK 239 (242)
T ss_pred cccee
Confidence 98763
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.45 E-value=6.8e-14 Score=134.03 Aligned_cols=69 Identities=38% Similarity=0.882 Sum_probs=59.1
Q ss_pred HHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCccc
Q 015861 188 ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIW 267 (399)
Q Consensus 188 a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~w 267 (399)
+...+++.+|+||||.+.+++ ...++||++++|+|+||..||.+|...+. +||+||..+.+|+++.+|
T Consensus 168 ~~~~~~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-----------tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 168 LYNRSKDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEKN-----------TCPVCRTPFISVIKSRFF 235 (238)
T ss_pred hhcCCCCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcCC-----------CCCCCCCEeeEEeeeeee
Confidence 345678899999999977654 44567899999999999999999997643 899999999999999988
Q ss_pred c
Q 015861 268 Y 268 (399)
Q Consensus 268 v 268 (399)
.
T Consensus 236 ~ 236 (238)
T PHA02929 236 T 236 (238)
T ss_pred e
Confidence 5
No 5
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.03 E-value=1e-10 Score=116.68 Aligned_cols=54 Identities=35% Similarity=0.882 Sum_probs=49.3
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCCCCCccCC-CCCCCCCCCCcCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~-~G~C~~G~~C~y~H~~~ 56 (399)
++++|+||++|.|++|+.|.|+|++...+++.|.||. .|.|.+|..|.|.|..+
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCCh
Confidence 5789999999999999999999999667788888885 89999999999999886
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.98 E-value=2.2e-10 Score=81.75 Aligned_cols=43 Identities=40% Similarity=0.994 Sum_probs=34.5
Q ss_pred cccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCC
Q 015861 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (399)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (399)
+|+||++.+... ..+.+++ |+|+||.+||.+|.+.+. +||+||
T Consensus 2 ~C~IC~~~~~~~-----~~~~~l~-C~H~fh~~Ci~~~~~~~~-----------~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG-----EKVVKLP-CGHVFHRSCIKEWLKRNN-----------SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT-----SCEEEET-TSEEEEHHHHHHHHHHSS-----------B-TTTH
T ss_pred CCcCCChhhcCC-----CeEEEcc-CCCeeCHHHHHHHHHhCC-----------cCCccC
Confidence 699999997542 3445666 999999999999998753 899998
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.78 E-value=4.8e-09 Score=97.45 Aligned_cols=64 Identities=30% Similarity=0.783 Sum_probs=44.9
Q ss_pred HHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCC-----ccCcccccCCCCCCCcc
Q 015861 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGM-----DVNTALRACPICRKLSY 259 (399)
Q Consensus 187 ~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~-----~~~~~~~~CP~CR~~s~ 259 (399)
.++...++.+|+||++.+ ..| +++.|+|.||..||.+|......... +..+....||+||..+.
T Consensus 11 ~~~~~~~~~~CpICld~~-~dP--------VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQV-RDP--------VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred eeccCCCccCCccCCCcC-CCc--------EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 345666789999999974 443 56679999999999999864321100 01223468999999875
No 8
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.75 E-value=5.7e-09 Score=74.33 Aligned_cols=42 Identities=38% Similarity=0.903 Sum_probs=29.0
Q ss_pred ccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
|+||++. +.+| ..| .|+|+||.+||.+|.+..+.. ...||+|
T Consensus 1 CpiC~~~-~~~P-------v~l-~CGH~FC~~Cl~~~~~~~~~~-------~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDL-FKDP-------VSL-PCGHSFCRSCLERLWKEPSGS-------GFSCPEC 42 (42)
T ss_dssp ETTTTSB--SSE-------EE--SSSSEEEHHHHHHHHCCSSSS-------T---SSS
T ss_pred CCccchh-hCCc-------ccc-CCcCHHHHHHHHHHHHccCCc-------CCCCcCC
Confidence 8999997 5566 344 699999999999988665421 1589998
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.75 E-value=5.9e-09 Score=76.46 Aligned_cols=49 Identities=31% Similarity=0.748 Sum_probs=36.4
Q ss_pred CcccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v 261 (399)
++..|.||++...+ .++..|+|. ||..|+.+|...+ +.||+||.++..|
T Consensus 1 ~~~~C~iC~~~~~~---------~~~~pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRD---------VVLLPCGHLCFCEECAERLLKRK-----------KKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSS---------EEEETTCEEEEEHHHHHHHHHTT-----------SBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCc---------eEEeCCCChHHHHHHhHHhcccC-----------CCCCcCChhhcCC
Confidence 46789999997332 344469999 9999999999843 4899999987654
No 10
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.64 E-value=9.9e-09 Score=95.04 Aligned_cols=102 Identities=25% Similarity=0.665 Sum_probs=65.3
Q ss_pred CccC-chhccCCCCCCCCCcccCCCCCCcCCcccCCCCChhHHHHHHHHHHHHHHHHHHHhCcC-----ccccccccccc
Q 015861 131 RSIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQ-----EIECSVCLDRV 204 (399)
Q Consensus 131 ~~~C-~f~~~G~C~~G~~C~y~Hg~~c~~C~~~~lhp~~~~~~~~h~~~c~~~~~~~~a~~~s~-----d~~C~ICle~v 204 (399)
+.+| .|-.+|+|.||+.|.|+|...==--|=+.-.-++ . +..++...+. -..|+||-+.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWn------------A--~~Ee~~v~~~~~e~IPF~C~iCKkd- 205 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWN------------A--EYEEAPVISGPGEKIPFLCGICKKD- 205 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhhhcccccchhhc------------c--hhhhcccccCCCCCCceeehhchhh-
Confidence 5789 5779999999999999996431111100000011 1 1122211111 1479999998
Q ss_pred ccCCcccccceeecCCCCCcccHHH-HHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccCc
Q 015861 205 LSKPTAAERKFGLLSECDHPFCISC-IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (399)
Q Consensus 205 ~~k~~~~~~~fgil~~C~H~FC~~C-I~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~~ 271 (399)
|+.| |..+|+|.||-.| |++++... .|-+|-+..+ ..+||...
T Consensus 206 y~sp--------vvt~CGH~FC~~Cai~~y~kg~------------~C~~Cgk~t~----G~f~V~~d 249 (259)
T COG5152 206 YESP--------VVTECGHSFCSLCAIRKYQKGD------------ECGVCGKATY----GRFWVVSD 249 (259)
T ss_pred ccch--------hhhhcchhHHHHHHHHHhccCC------------cceecchhhc----cceeHHhh
Confidence 5544 7788999999999 67777543 7999998765 56787643
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.63 E-value=2e-08 Score=70.04 Aligned_cols=39 Identities=36% Similarity=1.122 Sum_probs=30.8
Q ss_pred ccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
|+||++.+.+ | .++..|+|+||.+||.+|.+.+ .+||+|
T Consensus 1 C~iC~~~~~~-~-------~~~~~CGH~fC~~C~~~~~~~~-----------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-P-------VVVTPCGHSFCKECIEKYLEKN-----------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-E-------EEECTTSEEEEHHHHHHHHHCT-----------SB-TTT
T ss_pred CCCCCCcccC-c-------CEECCCCCchhHHHHHHHHHCc-----------CCCcCC
Confidence 8999998554 3 4677899999999999999863 489998
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.6e-08 Score=94.38 Aligned_cols=57 Identities=28% Similarity=0.815 Sum_probs=45.5
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc--eeecC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~--~viPs 264 (399)
......|.||||...+ .|++-|+|.||..||.+|...... .+.||+|+..+. -|||-
T Consensus 44 ~~~~FdCNICLd~akd---------PVvTlCGHLFCWpClyqWl~~~~~--------~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---------PVVTLCGHLFCWPCLYQWLQTRPN--------SKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCC---------CEEeecccceehHHHHHHHhhcCC--------CeeCCccccccccceEEee
Confidence 4567899999998443 488889999999999999998753 368999996654 46765
No 13
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.58 E-value=3.1e-08 Score=78.61 Aligned_cols=51 Identities=25% Similarity=0.703 Sum_probs=35.6
Q ss_pred CcccccccccccccCC-----cccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCC
Q 015861 193 QEIECSVCLDRVLSKP-----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~-----~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (399)
.+..|+||++.+.+.. +..+.. .++..|+|.|+..||.+|...+. +||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~-i~~~~C~H~FH~~Ci~~Wl~~~~-----------~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECP-IVWGPCGHIFHFHCISQWLKQNN-----------TCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS--EEEETTSEEEEHHHHHHHHTTSS-----------B-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccc-eEecccCCCEEHHHHHHHHhcCC-----------cCCCCC
Confidence 3456999999974321 011233 35556999999999999997653 899998
No 14
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.57 E-value=2.4e-08 Score=94.34 Aligned_cols=53 Identities=30% Similarity=0.773 Sum_probs=34.0
Q ss_pred cccccccc-ccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCCCC
Q 015861 4 RVLCKFFA-HGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (399)
Q Consensus 4 ~~~Cryf~-~G~C~~G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~~C~y~H~~~~~ 58 (399)
.+.||||. +|.|.+|..|+|.|.... ..+|.-|+.|.|.....|..+|...+.
T Consensus 206 avycryynangicgkgaacrfvheptr--kticpkflngrcnkaedcnlsheldpr 259 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPTR--KTICPKFLNGRCNKAEDCNLSHELDPR 259 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccccc--cccChHHhcCccCchhcCCcccccCcc
Confidence 45677765 577777777777775432 456666666666666666666665543
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.56 E-value=5.8e-08 Score=67.40 Aligned_cols=44 Identities=43% Similarity=1.111 Sum_probs=34.7
Q ss_pred cccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCC
Q 015861 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (399)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (399)
+|+||++.+ .++ .+++.|+|.||..|+..|..... ..||+||..
T Consensus 1 ~C~iC~~~~-~~~-------~~~~~C~H~~c~~C~~~~~~~~~----------~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-REP-------VVLLPCGHVFCRSCIDKWLKSGK----------NTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-hCc-------eEecCCCChhcHHHHHHHHHhCc----------CCCCCCCCc
Confidence 599999986 222 45566999999999999998622 479999975
No 16
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.7e-08 Score=100.82 Aligned_cols=80 Identities=25% Similarity=0.567 Sum_probs=54.2
Q ss_pred HHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHH-HHhhCCCCCCccCcccccCCCCCCCcce--eec
Q 015861 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSYF--VIP 263 (399)
Q Consensus 187 ~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viP 263 (399)
+.+--+.+..|+|||+. . .++++.+|||+||..||.+ |...+ .+.-+.||+||.+++. |-|
T Consensus 179 ~qv~~~t~~~CPICL~~---~------~~p~~t~CGHiFC~~CiLqy~~~s~-------~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 179 FQVYGSTDMQCPICLEP---P------SVPVRTNCGHIFCGPCILQYWNYSA-------IKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred hhhhcCcCCcCCcccCC---C------CcccccccCceeeHHHHHHHHhhhc-------ccCCccCCchhhhccccceee
Confidence 33444559999999997 1 3578889999999999988 66552 2345799999999886 554
Q ss_pred CcccccCchhHHHHHHHHHhhc
Q 015861 264 SVIWYYTPEEKQEIIDSYKSKL 285 (399)
Q Consensus 264 s~~wv~~~~eK~~li~~yk~~~ 285 (399)
- +|..+ .|++-++.+....
T Consensus 243 v-~~e~~--qkke~l~~~~~~n 261 (513)
T KOG2164|consen 243 V-FIEDD--QKKEELKLHQDPN 261 (513)
T ss_pred e-eeccc--cccHHHHHHhccc
Confidence 3 45443 3333355554433
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=6.5e-08 Score=67.67 Aligned_cols=41 Identities=39% Similarity=1.125 Sum_probs=32.1
Q ss_pred ccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
|+||++.+ ..+ .++..|+|.||..||++|.+... ...||+|
T Consensus 1 C~iC~~~~-~~~-------~~~~~C~H~fC~~C~~~~~~~~~---------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF-EDP-------VILLPCGHSFCRDCLRKWLENSG---------SVKCPLC 41 (41)
T ss_dssp ETTTSSBC-SSE-------EEETTTSEEEEHHHHHHHHHHTS---------SSBTTTT
T ss_pred CCcCCccc-cCC-------CEEecCCCcchHHHHHHHHHhcC---------CccCCcC
Confidence 89999974 443 34677999999999999998632 2479998
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.5e-08 Score=87.98 Aligned_cols=48 Identities=35% Similarity=0.845 Sum_probs=39.1
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
.-..|+|||+.+-+|- -+..+|||+||..||+.-++.. ..||+||+..
T Consensus 130 ~~~~CPiCl~~~sek~-------~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkI 177 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKV-------PVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKI 177 (187)
T ss_pred cccCCCceecchhhcc-------ccccccchhHHHHHHHHHHHhC-----------CCCCCccccc
Confidence 3478999999977663 3668999999999999988765 3899999644
No 19
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.46 E-value=2e-07 Score=93.16 Aligned_cols=95 Identities=24% Similarity=0.594 Sum_probs=68.9
Q ss_pred cccccccc-cccCCCCCCCCCCCC-C---------C-------CCCCCCccCC-CCCCCC-CCCCcCCCCCCCCCCcccC
Q 015861 5 VLCKFFAH-GACLKGEHCEFSHDW-K---------D-------PPNNICTYYQ-KGFCSY-GSRCRYEHVKPSRSESAAS 64 (399)
Q Consensus 5 ~~Cryf~~-G~C~~G~~C~fsHd~-~---------~-------~~~~vCr~f~-~G~C~~-G~~C~y~H~~~~~~~~~~s 64 (399)
..|.++.. |.|..|..|+|.|.. . . .++++|++|. .|.|+| |++|+|+|..........
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~- 165 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS- 165 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc-
Confidence 47888875 999999999999975 1 1 2367899998 899999 999999998765331100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCccCchh-ccCCCC
Q 015861 65 SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFA-AAGNCP 143 (399)
Q Consensus 65 ~~~~~~~~~~s~~~~~~~~~g~~p~~s~~~qp~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~C~f~-~~G~C~ 143 (399)
.... ......+..+|++| ..|.|+
T Consensus 166 -----------------------------------------------------~~~~--~~~~~~kt~lC~~f~~tG~C~ 190 (332)
T KOG1677|consen 166 -----------------------------------------------------ENQV--GNPPKYKTKLCPKFQKTGLCK 190 (332)
T ss_pred -----------------------------------------------------chhh--cCCCCCCCcCCCccccCCCCC
Confidence 0000 00113456889655 669999
Q ss_pred CCCCCcccCCCC
Q 015861 144 RGEKCPHIHGDT 155 (399)
Q Consensus 144 ~G~~C~y~Hg~~ 155 (399)
||..|.|+|+..
T Consensus 191 yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 191 YGSRCRFIHGEP 202 (332)
T ss_pred CCCcCeecCCCc
Confidence 999999999976
No 20
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.1e-07 Score=92.71 Aligned_cols=48 Identities=40% Similarity=0.933 Sum_probs=38.7
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..+..|.||||. .+.| ....|||.||..||..|-..+. .||+||..+.
T Consensus 237 ~a~~kC~LCLe~-~~~p--------SaTpCGHiFCWsCI~~w~~ek~-----------eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLEN-RSNP--------SATPCGHIFCWSCILEWCSEKA-----------ECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecC-CCCC--------CcCcCcchHHHHHHHHHHcccc-----------CCCcccccCC
Confidence 345789999998 3344 2345999999999999999875 5999999865
No 21
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.42 E-value=3e-07 Score=90.34 Aligned_cols=55 Identities=40% Similarity=0.915 Sum_probs=49.7
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCC--CCCCccC-CCCCCCCCCCCcCCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPP--NNICTYY-QKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~~C~fsHd~~~~~--~~vCr~f-~~G~C~~G~~C~y~H~~~~ 57 (399)
..++|++|+.|.|+.|..|.|+|+.+... ...|++| +.|.|..|..|.|.|..|.
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~ 160 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPD 160 (285)
T ss_pred CCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCcc
Confidence 56899999999999999999999988766 7889999 7999999999999998854
No 22
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.37 E-value=3e-07 Score=74.96 Aligned_cols=60 Identities=23% Similarity=0.521 Sum_probs=41.7
Q ss_pred CcccccccccccccCC----cccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 193 QEIECSVCLDRVLSKP----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~----~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
+|..||||...+..-- .|++.---++-.|+|.|.+.||.+|.++... ...||+||.+..|
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~--------~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS--------KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC--------CCCCCCcCCeeee
Confidence 4889999998754211 1222211244569999999999999987431 2489999998764
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.37 E-value=2.5e-07 Score=66.21 Aligned_cols=44 Identities=39% Similarity=1.037 Sum_probs=33.0
Q ss_pred cccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCC
Q 015861 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (399)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (399)
.|+||++.+ ++ ++++ +|.+|+|+||.+||.++. .. ...||+||+
T Consensus 1 ~C~~C~~~~-~~----~~~~-~l~~CgH~~C~~C~~~~~-~~----------~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SE----ERRP-RLTSCGHIFCEKCLKKLK-GK----------SVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cC----CCCe-EEcccCCHHHHHHHHhhc-CC----------CCCCcCCCC
Confidence 499999986 21 3344 555699999999999998 22 148999985
No 24
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.3e-07 Score=89.00 Aligned_cols=56 Identities=29% Similarity=0.889 Sum_probs=45.2
Q ss_pred HHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 187 ~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
.++++...++|.|||+.+. | ..++.+|+ |+|.|...||.+|...-. ..||+||+..
T Consensus 316 ~~~ea~~GveCaICms~fi-K----~d~~~vlP-C~H~FH~~Cv~kW~~~y~----------~~CPvCrt~i 371 (374)
T COG5540 316 RAVEADKGVECAICMSNFI-K----NDRLRVLP-CDHRFHVGCVDKWLLGYS----------NKCPVCRTAI 371 (374)
T ss_pred hHHhcCCCceEEEEhhhhc-c----cceEEEec-cCceechhHHHHHHhhhc----------ccCCccCCCC
Confidence 3566778899999999975 4 24588887 999999999999998432 3799999874
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=7e-07 Score=91.67 Aligned_cols=68 Identities=31% Similarity=0.672 Sum_probs=47.0
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~ 270 (399)
......|+||++. +..| ++..|+|+||..||+.|.... ..||+||..+... . +..
T Consensus 23 Le~~l~C~IC~d~-~~~P--------vitpCgH~FCs~CI~~~l~~~-----------~~CP~Cr~~~~~~---~--Lr~ 77 (397)
T TIGR00599 23 LDTSLRCHICKDF-FDVP--------VLTSCSHTFCSLCIRRCLSNQ-----------PKCPLCRAEDQES---K--LRS 77 (397)
T ss_pred cccccCCCcCchh-hhCc--------cCCCCCCchhHHHHHHHHhCC-----------CCCCCCCCccccc---c--Ccc
Confidence 3456899999997 4444 455799999999999998653 2799999986531 0 111
Q ss_pred chhHHHHHHHHHh
Q 015861 271 PEEKQEIIDSYKS 283 (399)
Q Consensus 271 ~~eK~~li~~yk~ 283 (399)
.-.-+.||+.|+.
T Consensus 78 N~~L~~iVe~~~~ 90 (397)
T TIGR00599 78 NWLVSEIVESFKN 90 (397)
T ss_pred chHHHHHHHHHHH
Confidence 2223467777763
No 26
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.22 E-value=8.7e-07 Score=88.54 Aligned_cols=58 Identities=41% Similarity=0.971 Sum_probs=49.1
Q ss_pred CCccccccccc-cccCC-CCCCCCCCCCCC---------------CCCCCCccCCC-CCCCCCCCCcCCCCCCCCC
Q 015861 2 SKRVLCKFFAH-GACLK-GEHCEFSHDWKD---------------PPNNICTYYQK-GFCSYGSRCRYEHVKPSRS 59 (399)
Q Consensus 2 tk~~~Cryf~~-G~C~~-G~~C~fsHd~~~---------------~~~~vCr~f~~-G~C~~G~~C~y~H~~~~~~ 59 (399)
-|+.+|++|.. |.|++ |++|+|.|.... .++.+|.+|++ |.|.||.+|+|.|......
T Consensus 130 ~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 130 YKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred ccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 37899999985 99999 999999996542 24679999995 9999999999999977543
No 27
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.4e-06 Score=87.57 Aligned_cols=58 Identities=26% Similarity=0.763 Sum_probs=44.1
Q ss_pred CcCcccccccccccccCCc-----ccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPT-----AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~-----~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.+.|..|.||||.++..+. ..+..---|+ |+|+|.+.|++.|...+| +||+||.+.-|
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQ-----------TCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQ-----------TCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhcc-----------CCCcccCcccc
Confidence 6788999999999766431 0111112455 999999999999999877 89999998554
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.17 E-value=1.8e-06 Score=65.36 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=36.6
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+..|+||++.+ +.| .+ ..|+|+||.+||.+|.... ..||+|+....
T Consensus 1 ~~~Cpi~~~~~-~~P-------v~-~~~G~v~~~~~i~~~~~~~-----------~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVM-KDP-------VI-LPSGQTYERRAIEKWLLSH-----------GTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcC-CCC-------EE-CCCCCEEeHHHHHHHHHHC-----------CCCCCCcCCCC
Confidence 35799999984 445 34 4699999999999999763 37999998864
No 29
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1e-06 Score=88.76 Aligned_cols=50 Identities=30% Similarity=0.839 Sum_probs=40.6
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.+|.||||. |++ +.+.++|+ |+|.|...||..|..... +.||+|+.....
T Consensus 230 ~~CaIClEd-Y~~----GdklRiLP-C~H~FH~~CIDpWL~~~r----------~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLED-YEK----GDKLRILP-CSHKFHVNCIDPWLTQTR----------TFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecc-ccc----CCeeeEec-CCCchhhccchhhHhhcC----------ccCCCCCCcCCC
Confidence 399999999 554 34668887 999999999999998652 469999996543
No 30
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.11 E-value=2.1e-06 Score=57.36 Aligned_cols=39 Identities=51% Similarity=1.315 Sum_probs=29.3
Q ss_pred ccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
|+||++. ...+ .++ .|+|.||..||..|..... ..||+|
T Consensus 1 C~iC~~~-~~~~-------~~~-~C~H~~c~~C~~~~~~~~~----------~~CP~C 39 (39)
T smart00184 1 CPICLEE-LKDP-------VVL-PCGHTFCRSCIRKWLKSGN----------NTCPIC 39 (39)
T ss_pred CCcCccC-CCCc-------EEe-cCCChHHHHHHHHHHHhCc----------CCCCCC
Confidence 7899998 2222 344 5999999999999997221 379987
No 31
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.09 E-value=1.8e-06 Score=81.75 Aligned_cols=54 Identities=31% Similarity=0.806 Sum_probs=49.3
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCC
Q 015861 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKP 56 (399)
Q Consensus 2 tk~~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~~C~y~H~~~ 56 (399)
|+..+|.-|++|.|.+.+.|..+|.+++++.+.|+||+-|.|. +.+|+|.|..-
T Consensus 231 trkticpkflngrcnkaedcnlsheldprripacryfllgkcn-npncryvhihy 284 (377)
T KOG1492|consen 231 TRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCN-NPNCRYVHIHY 284 (377)
T ss_pred cccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCC-CCCceEEEEee
Confidence 4567899999999999999999999999999999999999998 59999999754
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.97 E-value=2.8e-06 Score=84.43 Aligned_cols=45 Identities=33% Similarity=0.980 Sum_probs=37.2
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+.|+||.|. +.-| ++..|+|+||-=|||+..+.+. .||.|++++.
T Consensus 24 LRC~IC~ey-f~ip--------~itpCsHtfCSlCIR~~L~~~p-----------~CP~C~~~~~ 68 (442)
T KOG0287|consen 24 LRCGICFEY-FNIP--------MITPCSHTFCSLCIRKFLSYKP-----------QCPTCCVTVT 68 (442)
T ss_pred HHHhHHHHH-hcCc--------eeccccchHHHHHHHHHhccCC-----------CCCceecccc
Confidence 569999997 4443 5556999999999999998764 7999999875
No 33
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.94 E-value=9.5e-07 Score=86.22 Aligned_cols=56 Identities=39% Similarity=0.995 Sum_probs=45.7
Q ss_pred CccccccccccccCCCCCCCCCCCCCC------------CCC------------------------CCCccCCC----C-
Q 015861 3 KRVLCKFFAHGACLKGEHCEFSHDWKD------------PPN------------------------NICTYYQK----G- 41 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~~C~fsHd~~~------------~~~------------------------~vCr~f~~----G- 41 (399)
|.++|-||..|.|.+|+.|.|||+++. .+. .||+||+. |
T Consensus 91 KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~k 170 (343)
T KOG1763|consen 91 KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGK 170 (343)
T ss_pred hHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC
Confidence 688999999999999999999999762 111 28999963 2
Q ss_pred -----CCCCCC-CCcCCCCCCCC
Q 015861 42 -----FCSYGS-RCRYEHVKPSR 58 (399)
Q Consensus 42 -----~C~~G~-~C~y~H~~~~~ 58 (399)
.|.+|. .|.|.|..|..
T Consensus 171 YGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 171 YGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred ccceeECCCCCCeeeeeecCCcc
Confidence 499974 89999998863
No 34
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.4e-06 Score=80.72 Aligned_cols=49 Identities=33% Similarity=0.874 Sum_probs=38.2
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHH-HHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..|..|.||||... +| .-..|+|+||+.||.. |-..+. --||+||...+
T Consensus 213 ~~d~kC~lC~e~~~-~p--------s~t~CgHlFC~~Cl~~~~t~~k~----------~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPE-VP--------SCTPCGHLFCLSCLLISWTKKKY----------EFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccC-Cc--------ccccccchhhHHHHHHHHHhhcc----------ccCchhhhhcc
Confidence 44778999999844 44 3446999999999999 987663 25999998654
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.89 E-value=1.3e-05 Score=79.75 Aligned_cols=53 Identities=25% Similarity=0.550 Sum_probs=39.3
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHH-HHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.+..|+||+...+-.| ..+|-|. .|+|.||.+||.. |.... ..||+|++++..
T Consensus 2 d~~~CP~Ck~~~y~np---~~kl~i~-~CGH~~C~sCv~~l~~~~~-----------~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGS-----------GSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCc---ccccccC-CCCCcccHHHHHHHhcCCC-----------CCCCCCCCccch
Confidence 3568999999877665 2344344 6999999999988 64322 379999988764
No 36
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.85 E-value=3.5e-06 Score=54.43 Aligned_cols=24 Identities=46% Similarity=1.144 Sum_probs=17.3
Q ss_pred Cccccccccc-cccCCCCCCCCCCC
Q 015861 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 (399)
Q Consensus 3 k~~~Cryf~~-G~C~~G~~C~fsHd 26 (399)
|+.+|++|+. |.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 6778888876 88888888888886
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.3e-06 Score=87.25 Aligned_cols=52 Identities=31% Similarity=0.671 Sum_probs=40.3
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCC
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (399)
....+..|.||+|.+..-++ ..--.|+ |+|+||..|+++|....+ +||+||.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~---~~~~rL~-C~Hifh~~CL~~W~er~q-----------tCP~CR~ 338 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHN---ITPKRLP-CGHIFHDSCLRSWFERQQ-----------TCPTCRT 338 (543)
T ss_pred hhhcCCeeeeechhhccccc---cccceee-cccchHHHHHHHHHHHhC-----------cCCcchh
Confidence 34558899999999765311 1113565 999999999999999865 8999999
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.78 E-value=3.3e-05 Score=61.13 Aligned_cols=66 Identities=20% Similarity=0.393 Sum_probs=45.2
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCcccccC
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv~~ 270 (399)
++..|+|+.+. +..| .+++ ++|+|+.++|.+|..... ..||+|+..... ++|+
T Consensus 3 ~~f~CpIt~~l-M~dP-------Vi~~-~G~tyer~~I~~~l~~~~----------~~~P~t~~~l~~~~l~pn------ 57 (73)
T PF04564_consen 3 DEFLCPITGEL-MRDP-------VILP-SGHTYERSAIERWLEQNG----------GTDPFTRQPLSESDLIPN------ 57 (73)
T ss_dssp GGGB-TTTSSB--SSE-------EEET-TSEEEEHHHHHHHHCTTS----------SB-TTT-SB-SGGGSEE-------
T ss_pred cccCCcCcCcH-hhCc-------eeCC-cCCEEcHHHHHHHHHcCC----------CCCCCCCCcCCcccceEC------
Confidence 46789999997 5556 5665 779999999999998733 489999887653 4544
Q ss_pred chhHHHHHHHHHhh
Q 015861 271 PEEKQEIIDSYKSK 284 (399)
Q Consensus 271 ~~eK~~li~~yk~~ 284 (399)
..-+..|+.|.+.
T Consensus 58 -~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 58 -RALKSAIEEWCAE 70 (73)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3456788888754
No 39
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4e-06 Score=62.72 Aligned_cols=51 Identities=31% Similarity=0.725 Sum_probs=38.5
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCc-ccHHH-HHHHHhhCCCCCCccCcccccCCCCCCCcceee
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISC-IRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~C-I~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~vi 262 (399)
+-+.+|.||+|.-.+ .+|--|+|. .|+.| ||.|+..+ ..||+||.+..-||
T Consensus 5 ~~~dECTICye~pvd---------sVlYtCGHMCmCy~Cg~rl~~~~~-----------g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 5 QWSDECTICYEHPVD---------SVLYTCGHMCMCYACGLRLKKALH-----------GCCPICRAPIKDVI 57 (62)
T ss_pred ccccceeeeccCcch---------HHHHHcchHHhHHHHHHHHHHccC-----------CcCcchhhHHHHHH
Confidence 345789999998554 366679996 69999 67788644 27999999876444
No 40
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.76 E-value=2.1e-05 Score=56.47 Aligned_cols=35 Identities=26% Similarity=0.730 Sum_probs=20.0
Q ss_pred ccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhC
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~ 237 (399)
|+||.| +.+.. ..--+|+ |+|+||.+||.+|.+..
T Consensus 1 CpIc~e-~~~~~----n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEE----NPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTS----S-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCC----CCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 44321 1224565 99999999999998864
No 41
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.75 E-value=1.7e-05 Score=50.40 Aligned_cols=24 Identities=50% Similarity=1.131 Sum_probs=18.6
Q ss_pred CccccccccccccCCCCCCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGEHCEFSHD 26 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~~C~fsHd 26 (399)
|+.+|++|+.|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 556788777788888888888885
No 42
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=97.69 E-value=2.7e-05 Score=78.14 Aligned_cols=56 Identities=32% Similarity=0.837 Sum_probs=47.0
Q ss_pred CCCcccccccc-ccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCC
Q 015861 1 MSKRVLCKFFA-HGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKP 56 (399)
Q Consensus 1 mtk~~~Cryf~-~G~C~~G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~~C~y~H~~~ 56 (399)
|+|...|.||. .|-|.+|..|.|.|.--......|++|..|+|..|..|++.|...
T Consensus 102 ~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~ 158 (325)
T KOG1040|consen 102 LTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERK 158 (325)
T ss_pred hcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcc
Confidence 45666787775 699999999999997644457899999999999999999999653
No 43
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2e-05 Score=74.01 Aligned_cols=69 Identities=25% Similarity=0.578 Sum_probs=47.4
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCccccc
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~ 269 (399)
...++..|.||++.+ ..| .+| .|+|+||..||..|.. . ...||.||.... +..
T Consensus 9 ~~~~~~~C~iC~~~~-~~p-------~~l-~C~H~~c~~C~~~~~~-~----------~~~Cp~cr~~~~-------~~~ 61 (386)
T KOG2177|consen 9 VLQEELTCPICLEYF-REP-------VLL-PCGHNFCRACLTRSWE-G----------PLSCPVCRPPSR-------NLR 61 (386)
T ss_pred hccccccChhhHHHh-hcC-------ccc-cccchHhHHHHHHhcC-C----------CcCCcccCCchh-------ccC
Confidence 345778999999984 444 355 5999999999999776 1 248999994111 233
Q ss_pred CchhHHHHHHHHHhhc
Q 015861 270 TPEEKQEIIDSYKSKL 285 (399)
Q Consensus 270 ~~~eK~~li~~yk~~~ 285 (399)
....-..+++.++..-
T Consensus 62 ~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 62 PNVLLANLVERLRQLR 77 (386)
T ss_pred ccHHHHHHHHHHHhcC
Confidence 4445556777776543
No 44
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.67 E-value=1.2e-05 Score=63.38 Aligned_cols=65 Identities=22% Similarity=0.464 Sum_probs=28.2
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+.+|+||++.+.+... .....---..|+.+|.+.|+.+|..+..........+...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~-~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGE-IPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCC-cCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 5789999998772211 1122222347999999999999987643222112345568999998764
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.65 E-value=1.2e-05 Score=62.18 Aligned_cols=44 Identities=41% Similarity=1.011 Sum_probs=21.7
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
-..|+||.+. +..| ..|.+|.|+||..||+.-.. ..||+|+++.
T Consensus 7 lLrCs~C~~~-l~~p-------v~l~~CeH~fCs~Ci~~~~~-------------~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDI-LKEP-------VCLGGCEHIFCSSCIRDCIG-------------SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S---SS--------B---SSS--B-TTTGGGGTT-------------TB-SSS--B-
T ss_pred hcCCcHHHHH-hcCC-------ceeccCccHHHHHHhHHhcC-------------CCCCCcCChH
Confidence 3579999997 5555 57899999999999966222 2599999864
No 46
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.60 E-value=2.2e-05 Score=77.93 Aligned_cols=53 Identities=32% Similarity=0.656 Sum_probs=44.3
Q ss_pred cccccccccccCCCCC-CCCCCCCCC-----CCCCCCccCCCCCCCCCCCCcCCCCCCCC
Q 015861 5 VLCKFFAHGACLKGEH-CEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (399)
Q Consensus 5 ~~Cryf~~G~C~~G~~-C~fsHd~~~-----~~~~vCr~f~~G~C~~G~~C~y~H~~~~~ 58 (399)
.+||-|++|.|++|+. |+|.|.... -+-..|..|++|.|.+ ++|+|.|.....
T Consensus 38 eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHpp~hl 96 (331)
T KOG2494|consen 38 EVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCSR-ENCKYLHPPQHL 96 (331)
T ss_pred HHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccCc-ccceecCCChhh
Confidence 5899999999999998 999997543 1235699999999995 889999987653
No 47
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.6e-05 Score=78.01 Aligned_cols=95 Identities=20% Similarity=0.570 Sum_probs=60.7
Q ss_pred CccC-chhccCCCCCCCCCcccCCCCCCcCCcccCCC-CChhHHHHHHHHHHHHHHHHHHHhCcCcc---cccccccccc
Q 015861 131 RSIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHP-FRPEEREEHMKSCEKKQKHLEALRRSQEI---ECSVCLDRVL 205 (399)
Q Consensus 131 ~~~C-~f~~~G~C~~G~~C~y~Hg~~c~~C~~~~lhp-~~~~~~~~h~~~c~~~~~~~~a~~~s~d~---~C~ICle~v~ 205 (399)
..+| .|-.+|+|.||+.|.|+|-..+=--|=+ |+- ++..+ +.--.+..-.+. .|.||-+.++
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~DyK~GWq-i~~e~d~~k------------e~~~~~~~D~~~~Pf~c~icr~~f~ 252 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQ-IEFEWDSAK------------EKKRVKIEDIELLPFKCFICRKYFY 252 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhhccccce-eehhhhccc------------cccceecCCcccCCccccccccccc
Confidence 4789 5669999999999999998764332221 111 11110 000011122223 4999999966
Q ss_pred cCCcccccceeecCCCCCcccHHHHHH-HHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 206 SKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 206 ~k~~~~~~~fgil~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+ -|.++|+|.||-.|-.+ .+.. ..|++|-+..+
T Consensus 253 ~---------pVvt~c~h~fc~~ca~~~~qk~------------~~c~vC~~~t~ 286 (313)
T KOG1813|consen 253 R---------PVVTKCGHYFCEVCALKPYQKG------------EKCYVCSQQTH 286 (313)
T ss_pred c---------chhhcCCceeehhhhccccccC------------Ccceecccccc
Confidence 5 37789999999999544 4432 27999998765
No 48
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.53 E-value=6.3e-05 Score=60.49 Aligned_cols=56 Identities=21% Similarity=0.543 Sum_probs=38.7
Q ss_pred ccccccccccccCC-------cccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee
Q 015861 195 IECSVCLDRVLSKP-------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (399)
Q Consensus 195 ~~C~ICle~v~~k~-------~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v 261 (399)
.+|+||-..|++-= ++++.--.+---|+|.|..-||.+|.+++. .||++|+++.+-
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-----------~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-----------VCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-----------CCCCCCceeEEe
Confidence 56888877765421 111211123334999999999999999864 799999987653
No 49
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.40 E-value=0.00012 Score=46.34 Aligned_cols=25 Identities=32% Similarity=1.254 Sum_probs=22.3
Q ss_pred CCCCCccCCCCCCCCCCCCcCCCCC
Q 015861 31 PNNICTYYQKGFCSYGSRCRYEHVK 55 (399)
Q Consensus 31 ~~~vCr~f~~G~C~~G~~C~y~H~~ 55 (399)
+..+|++|++|.|.+|++|+|+|..
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCcC
Confidence 4568999999999999999999963
No 50
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.34 E-value=2.6e-05 Score=50.32 Aligned_cols=24 Identities=29% Similarity=1.136 Sum_probs=18.6
Q ss_pred CCCCCccCCC-CCCCCCCCCcCCCC
Q 015861 31 PNNICTYYQK-GFCSYGSRCRYEHV 54 (399)
Q Consensus 31 ~~~vCr~f~~-G~C~~G~~C~y~H~ 54 (399)
++.+|++|++ |.|.+|++|+|+|.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 4679999985 99999999999996
No 51
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.34 E-value=0.0001 Score=72.27 Aligned_cols=62 Identities=29% Similarity=0.599 Sum_probs=45.9
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee-ecCcccccCchh
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV-IPSVIWYYTPEE 273 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v-iPs~~wv~~~~e 273 (399)
..|-||-+.|.- .++..|+|+||.=|||....... .||+||..+.++ .++..-+
T Consensus 26 lrC~IC~~~i~i---------p~~TtCgHtFCslCIR~hL~~qp-----------~CP~Cr~~~~esrlr~~s~~----- 80 (391)
T COG5432 26 LRCRICDCRISI---------PCETTCGHTFCSLCIRRHLGTQP-----------FCPVCREDPCESRLRGSSGS----- 80 (391)
T ss_pred HHhhhhhheeec---------ceecccccchhHHHHHHHhcCCC-----------CCccccccHHhhhcccchhH-----
Confidence 569999998542 47778999999999999997764 699999988763 3443322
Q ss_pred HHHHHHHHH
Q 015861 274 KQEIIDSYK 282 (399)
Q Consensus 274 K~~li~~yk 282 (399)
.+||+.|+
T Consensus 81 -~ei~es~~ 88 (391)
T COG5432 81 -REINESHA 88 (391)
T ss_pred -HHHHHhhh
Confidence 25666654
No 52
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=6.8e-05 Score=59.83 Aligned_cols=59 Identities=24% Similarity=0.551 Sum_probs=39.6
Q ss_pred cccccccccccccC-C---cccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 194 EIECSVCLDRVLSK-P---TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 194 d~~C~ICle~v~~k-~---~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
+++||||--.+..- | .|++.---++--|.|.|..-||.+|..++.. ...||+||.++.|
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts--------q~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS--------QGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc--------cccCCcchheeEe
Confidence 45899997653211 0 0222222245569999999999999987643 2489999998765
No 53
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.18 E-value=0.00013 Score=72.58 Aligned_cols=25 Identities=28% Similarity=0.800 Sum_probs=22.2
Q ss_pred CCCCccCCCCCCCCCCC-CcCCCCCC
Q 015861 32 NNICTYYQKGFCSYGSR-CRYEHVKP 56 (399)
Q Consensus 32 ~~vCr~f~~G~C~~G~~-C~y~H~~~ 56 (399)
..|||-|++|.|++|++ |+|.|...
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCC
Confidence 46899999999999999 99999544
No 54
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00046 Score=71.57 Aligned_cols=52 Identities=35% Similarity=0.733 Sum_probs=33.5
Q ss_pred cccccccccccCCCCCCCCCCCCCCC-CCCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 5 VLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 5 ~~Cryf~~G~C~~G~~C~fsHd~~~~-~~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
..|.||+.-.|++|+.|.|+|.-+.. ...+|.||+.+.|-. .-|+|.|..-.
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~-k~C~YRHSe~~ 56 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCCR-KVCRYRHSEID 56 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcCcchhhhhhhcCccc-ccccchhhHHh
Confidence 35777777788888888888864432 345677777554432 36777776443
No 55
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.04 E-value=0.00018 Score=74.07 Aligned_cols=49 Identities=41% Similarity=0.954 Sum_probs=37.8
Q ss_pred cCcccccccccccccCCcccccceeecC-CCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLS-ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~-~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.+--+|+||||.+-+.-+ ||++ -|+|+|...|+.+|... +||+||-...
T Consensus 173 tELPTCpVCLERMD~s~~------gi~t~~c~Hsfh~~cl~~w~~~-------------scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTT------GILTILCNHSFHCSCLMKWWDS-------------SCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCcccc------ceeeeecccccchHHHhhcccC-------------cChhhhhhcC
Confidence 344689999999665432 5543 49999999999999864 7999997554
No 56
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.95 E-value=0.0011 Score=65.60 Aligned_cols=53 Identities=34% Similarity=0.883 Sum_probs=45.3
Q ss_pred ccccccc-ccccCC---CCCCCCC---CCCCC---------CCCCCCccCC-CCCCCCCCCCcCCCCCCC
Q 015861 5 VLCKFFA-HGACLK---GEHCEFS---HDWKD---------PPNNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 5 ~~Cryf~-~G~C~~---G~~C~fs---Hd~~~---------~~~~vCr~f~-~G~C~~G~~C~y~H~~~~ 57 (399)
.+|.-|. .|.|.. |+.|.|+ |.++. .++..|.-|+ -|.|.||.+|.|.|....
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~ 300 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChh
Confidence 6898775 699999 9999999 98775 2467899998 699999999999997654
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00031 Score=76.49 Aligned_cols=46 Identities=30% Similarity=0.789 Sum_probs=38.6
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..|+.|-...-+ .|++.|+|+||..||++--..++ +.||.|-..|.
T Consensus 644 LkCs~Cn~R~Kd---------~vI~kC~H~FC~~Cvq~r~etRq----------RKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---------AVITKCGHVFCEECVQTRYETRQ----------RKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchhh---------HHHHhcchHHHHHHHHHHHHHhc----------CCCCCCCCCCC
Confidence 689999975322 68889999999999999777776 68999999885
No 58
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.90 E-value=0.00013 Score=69.73 Aligned_cols=55 Identities=35% Similarity=0.924 Sum_probs=45.2
Q ss_pred CccccccccccccCCCCCCCCCCCCCC-------------------C---------CCCCCccCC----CC------CCC
Q 015861 3 KRVLCKFFAHGACLKGEHCEFSHDWKD-------------------P---------PNNICTYYQ----KG------FCS 44 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~~C~fsHd~~~-------------------~---------~~~vCr~f~----~G------~C~ 44 (399)
|+++|-.|+.+.|.+|+.|.|+|+... . ...||+||+ .| .|.
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CP 163 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCP 163 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCC
Confidence 678999999999999999999998441 0 135899996 33 499
Q ss_pred CC-CCCcCCCCCCC
Q 015861 45 YG-SRCRYEHVKPS 57 (399)
Q Consensus 45 ~G-~~C~y~H~~~~ 57 (399)
+| .+|.|.|..|.
T Consensus 164 ng~~~C~y~H~Lp~ 177 (299)
T COG5252 164 NGNMRCSYIHKLPD 177 (299)
T ss_pred CCCceeeeeeccCc
Confidence 97 69999999886
No 59
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00014 Score=72.96 Aligned_cols=48 Identities=35% Similarity=0.740 Sum_probs=36.5
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
.++.|.|||+.|. +. -....|.|-||.+||-+-..... ..||.||+..
T Consensus 42 ~~v~c~icl~llk-~t-------mttkeClhrfc~~ci~~a~r~gn----------~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSLLK-KT-------MTTKECLHRFCFDCIWKALRSGN----------NECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHHHH-hh-------cccHHHHHHHHHHHHHHHHHhcC----------CCCchHHhhc
Confidence 4678999999754 33 35567999999999977554433 4899999865
No 60
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00063 Score=67.15 Aligned_cols=48 Identities=31% Similarity=0.684 Sum_probs=36.2
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHH--HHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN--WRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~--W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+....+|.||+..-. -| ..| .|+|.||.-||.. |... ++|++||.++.
T Consensus 4 ~~~~~eC~IC~nt~n-~P-------v~l-~C~HkFCyiCiKGsy~ndk------------~~CavCR~pid 53 (324)
T KOG0824|consen 4 RTKKKECLICYNTGN-CP-------VNL-YCFHKFCYICIKGSYKNDK------------KTCAVCRFPID 53 (324)
T ss_pred cccCCcceeeeccCC-cC-------ccc-cccchhhhhhhcchhhcCC------------CCCceecCCCC
Confidence 346778999999833 22 455 5999999999987 4432 47999998875
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.72 E-value=0.00061 Score=74.23 Aligned_cols=69 Identities=22% Similarity=0.376 Sum_probs=51.2
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCc-----cccc
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV-----IWYY 269 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~-----~wv~ 269 (399)
..|+||+-...+. -.+.-..|.|.||..||..|-+..+ +||+||+.|..|++.. -||.
T Consensus 124 ~~CP~Ci~s~~Dq------L~~~~k~c~H~FC~~Ci~sWsR~aq-----------TCPiDR~EF~~v~V~eS~~~~~~vR 186 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQ------LEESEKHTAHYFCEECVGSWSRCAQ-----------TCPVDRGEFGEVKVLESTGIEANVR 186 (1134)
T ss_pred hhhhHHHHHHHHH------hhccccccccccHHHHhhhhhhhcc-----------cCchhhhhhheeeeeccccccceeE
Confidence 3499999875543 2244456999999999999998765 8999999999988864 3443
Q ss_pred --CchhHHHHHHH
Q 015861 270 --TPEEKQEIIDS 280 (399)
Q Consensus 270 --~~~eK~~li~~ 280 (399)
..||++.++++
T Consensus 187 ~lP~EEs~~~~e~ 199 (1134)
T KOG0825|consen 187 CLPSEESENILEK 199 (1134)
T ss_pred ecchhhhhhhhhh
Confidence 35677776655
No 62
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.63 E-value=0.0034 Score=62.06 Aligned_cols=54 Identities=31% Similarity=0.741 Sum_probs=48.9
Q ss_pred ccccccc-cccccCCCCCCCCCCCCCCCCCCCCccCC---CCCCCCCCCCcCCCCCCC
Q 015861 4 RVLCKFF-AHGACLKGEHCEFSHDWKDPPNNICTYYQ---KGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 4 ~~~Cryf-~~G~C~~G~~C~fsHd~~~~~~~vCr~f~---~G~C~~G~~C~y~H~~~~ 57 (399)
...|+|| +.|.|..|..|.|.|...+.....|.+|. .++|..|..|++.|....
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~ 191 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLKR 191 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCcccccccccc
Confidence 5679999 78999999999999988667788999999 799999999999998764
No 63
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00086 Score=69.65 Aligned_cols=53 Identities=21% Similarity=0.633 Sum_probs=35.2
Q ss_pred ccccccccccccCCCCCCCCCCCCCC--CCCCCCccCCCCC-CCCCCCCcCCCCCCCC
Q 015861 4 RVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGF-CSYGSRCRYEHVKPSR 58 (399)
Q Consensus 4 ~~~Cryf~~G~C~~G~~C~fsHd~~~--~~~~vCr~f~~G~-C~~G~~C~y~H~~~~~ 58 (399)
.++|+||+.|.|=+ ..|+|.|.--. ++...|.|+.++. |. .++|-|.|..|+.
T Consensus 32 ~t~C~~w~~~~~C~-k~C~YRHSe~~~kr~e~~CYwe~~p~gC~-k~~CgfRH~~pPL 87 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCR-KVCRYRHSEIDKKRSEIPCYWENQPTGCQ-KLNCGFRHNRPPL 87 (667)
T ss_pred cchhhhhhhcCccc-ccccchhhHHhhhcCcccceeecCCCccC-CCccccccCCCch
Confidence 45788888765332 38888886433 2346688888777 77 4888888877653
No 64
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.41 E-value=0.0016 Score=72.32 Aligned_cols=60 Identities=28% Similarity=0.671 Sum_probs=43.6
Q ss_pred HhCcCcccccccccccc--cCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee
Q 015861 189 LRRSQEIECSVCLDRVL--SKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~--~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v 261 (399)
.+-+--.+|+||..++. +..-|+.| -+-|.|.|..+|+-+|..++.. .+||+||..+.||
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskr----C~TCknKFH~~CLyKWf~Ss~~---------s~CPlCRseitfv 1525 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKR----CATCKNKFHTRCLYKWFASSAR---------SNCPLCRSEITFV 1525 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccc----cchhhhhhhHHHHHHHHHhcCC---------CCCCccccccccC
Confidence 46677789999998754 11112221 2349999999999999987653 4899999877654
No 65
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0022 Score=66.34 Aligned_cols=75 Identities=24% Similarity=0.594 Sum_probs=48.6
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccC-
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT- 270 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~- 270 (399)
..+.+|.||+..++. | |.++|+|+||..||.+=.+.. .-||.||..+.- .+...-...
T Consensus 82 ~sef~c~vc~~~l~~-p--------v~tpcghs~c~~Cl~r~ld~~-----------~~cp~Cr~~l~e-~~~~~~~~~~ 140 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP-P--------VVTPCGHSFCLECLDRSLDQE-----------TECPLCRDELVE-LPALEQALSL 140 (398)
T ss_pred cchhhhhhhHhhcCC-C--------ccccccccccHHHHHHHhccC-----------CCCccccccccc-chHHHHHHHH
Confidence 567899999998664 4 444799999999988833321 379999998753 111111111
Q ss_pred chhHHHHHHHHHhhccc
Q 015861 271 PEEKQEIIDSYKSKLKS 287 (399)
Q Consensus 271 ~~eK~~li~~yk~~~~~ 287 (399)
.-.+.++|.+|......
T Consensus 141 ~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 141 NRLLCKLITKFLEGSSS 157 (398)
T ss_pred HHHHHHHHHHhhhhhhc
Confidence 23444677776666554
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.30 E-value=0.0018 Score=64.67 Aligned_cols=58 Identities=28% Similarity=0.620 Sum_probs=45.8
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcc
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI 266 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~ 266 (399)
+...-++|.+|-..+.+- -+++.|-|+||.+||.+..... +.||+|.+..+-..|...
T Consensus 11 ~~n~~itC~LC~GYliDA--------TTI~eCLHTFCkSCivk~l~~~-----------~~CP~C~i~ih~t~pl~n 68 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDA--------TTITECLHTFCKSCIVKYLEES-----------KYCPTCDIVIHKTHPLLN 68 (331)
T ss_pred hcccceehhhccceeecc--------hhHHHHHHHHHHHHHHHHHHHh-----------ccCCccceeccCcccccc
Confidence 445668999999987764 2566799999999998877653 489999999887776644
No 67
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.20 E-value=0.0074 Score=63.75 Aligned_cols=54 Identities=24% Similarity=0.603 Sum_probs=45.1
Q ss_pred ccccccccccccCCCCCCCCCCCCCC-------CCCCCCccCCCCCCCCCCCCcCCCCCCCCCC
Q 015861 4 RVLCKFFAHGACLKGEHCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60 (399)
Q Consensus 4 ~~~Cryf~~G~C~~G~~C~fsHd~~~-------~~~~vCr~f~~G~C~~G~~C~y~H~~~~~~~ 60 (399)
-++|.-|.+|.|.+||+|.|.|..-. .++..|+.- |.|.. .-|-|+|.......
T Consensus 236 ~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~R-rvCfFAH~~eqLR~ 296 (528)
T KOG1595|consen 236 STPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG--GYCPR-RVCFFAHSPEQLRP 296 (528)
T ss_pred CccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC--CCCcc-ceEeeecChHHhcc
Confidence 46899999999999999999997654 467889886 89997 88999998776643
No 68
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0021 Score=67.08 Aligned_cols=55 Identities=25% Similarity=0.746 Sum_probs=38.2
Q ss_pred CcccccccccccccCCccc---------ccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 193 QEIECSVCLDRVLSKPTAA---------ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~---------~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
....|.|||..|--..+.+ .|.| +++.|.|+|...|+.+|...-. ..||+||.+.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nY-m~tPC~HifH~~CL~~WMd~yk----------l~CPvCR~pL 633 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNY-MLTPCHHIFHRQCLLQWMDTYK----------LICPVCRCPL 633 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccc-cccchHHHHHHHHHHHHHhhhc----------ccCCccCCCC
Confidence 3467999998764222111 1123 5566999999999999998432 3799999874
No 69
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0033 Score=64.07 Aligned_cols=50 Identities=34% Similarity=1.004 Sum_probs=38.5
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCC
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (399)
..|.||.+. +| ..+-.|-+..|+|+|...|+.+|...... .+.||+||..
T Consensus 5 A~C~Ic~d~---~p--~~~~l~~i~~cGhifh~~cl~qwfe~~Ps--------~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDG---RP--NDHELGPIGTCGHIFHTTCLTQWFEGDPS--------NRGCPICQIK 54 (465)
T ss_pred ceeeEeccC---Cc--cccccccccchhhHHHHHHHHHHHccCCc--------cCCCCceeec
Confidence 579999554 33 35566777779999999999999987542 3799999943
No 70
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0068 Score=62.17 Aligned_cols=54 Identities=30% Similarity=0.685 Sum_probs=43.2
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
..+|+|||+.+. .+++.+..+|- |+|.|=-+||++|.- + +.+..||.|.....+
T Consensus 4 g~tcpiclds~~---~~g~hr~vsl~-cghlFgs~cie~wl~-k--------~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYT---TAGNHRIVSLQ-CGHLFGSQCIEKWLG-K--------KTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeee---ecCceEEeeec-ccccccHHHHHHHHh-h--------hhhhhCcccCChhHH
Confidence 468999999854 35788887775 999999999999994 2 235689999887764
No 71
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.81 E-value=0.0082 Score=63.44 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=39.8
Q ss_pred CccccccccccccCCCCCCCCCCCCC-C---------CCCCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGEHCEFSHDWK-D---------PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~~C~fsHd~~-~---------~~~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
|+..|. ++.|.-+-.|+|.|..+ + ....+|.-|.+|.|..||.|-|+|....
T Consensus 200 Kir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfE 261 (528)
T KOG1595|consen 200 KIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFE 261 (528)
T ss_pred eecccC---CccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceeh
Confidence 444553 34788889999999433 2 1357899999999999999999997654
No 72
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.79 E-value=0.0044 Score=64.06 Aligned_cols=50 Identities=26% Similarity=0.754 Sum_probs=40.2
Q ss_pred CcCcccccccccccccCCcccccceeec-CCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil-~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
..++..|.||+.++.+ | +. +.|+|.||..||.+|....+ .||.||.....
T Consensus 18 ~~~~l~C~~C~~vl~~-p--------~~~~~cgh~fC~~C~~~~~~~~~-----------~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRD-P--------VQTTTCGHRFCAGCLLESLSNHQ-----------KCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccC-C--------CCCCCCCCcccccccchhhccCc-----------CCcccccccch
Confidence 3567899999998554 4 44 48999999999999998743 79999887653
No 73
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.64 E-value=0.0068 Score=36.05 Aligned_cols=18 Identities=50% Similarity=1.172 Sum_probs=11.3
Q ss_pred ccccccccccCCCCCCCCCC
Q 015861 6 LCKFFAHGACLKGEHCEFSH 25 (399)
Q Consensus 6 ~Cryf~~G~C~~G~~C~fsH 25 (399)
+|+||.. |++|++|.|+|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 3666654 66666666666
No 74
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.58 E-value=0.012 Score=43.16 Aligned_cols=44 Identities=23% Similarity=0.659 Sum_probs=30.9
Q ss_pred cccccccccccCCcccccceeecCCCC-----CcccHHHHHHHHhhCCCCCCccCcccccCCCCC
Q 015861 196 ECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (399)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~-----H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (399)
.|-||++. .+. +..+ ++ .|. |.+..+|+.+|...+. ..+||+|.
T Consensus 1 ~CrIC~~~-~~~----~~~l-~~-PC~C~G~~~~vH~~Cl~~W~~~~~---------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDE----GDPL-VS-PCRCKGSLKYVHQECLERWINESG---------NKTCEICK 49 (49)
T ss_pred CccCCCCC-CCC----CCee-Ee-ccccCCchhHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence 48899982 211 1222 44 475 9999999999998764 24899995
No 75
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.27 E-value=0.007 Score=63.48 Aligned_cols=53 Identities=32% Similarity=0.807 Sum_probs=42.4
Q ss_pred cccccccccc---ccCCCCCCCCCCCCCC----C---CCCCCccCC-CCCCCCCCCCcCCCCCC
Q 015861 4 RVLCKFFAHG---ACLKGEHCEFSHDWKD----P---PNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (399)
Q Consensus 4 ~~~Cryf~~G---~C~~G~~C~fsHd~~~----~---~~~vCr~f~-~G~C~~G~~C~y~H~~~ 56 (399)
..+|.-..+| .|..|++|+|.||++. + -.+-|..|. .|+|.+|-.|||+-...
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhccc
Confidence 4678877776 7999999999999763 1 136799997 79999999999974433
No 76
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.19 E-value=0.01 Score=60.82 Aligned_cols=26 Identities=27% Similarity=0.829 Sum_probs=23.4
Q ss_pred CCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 32 NNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 32 ~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
+.+|+||+.|.|+||.+|||+|...-
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccchHhhccccccCcccccccCccc
Confidence 57899999999999999999997653
No 77
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.14 E-value=0.02 Score=63.39 Aligned_cols=62 Identities=29% Similarity=0.685 Sum_probs=44.6
Q ss_pred HhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.....-.+|-||.|.|... ...|.--+ |-|+|.+.||++|..+....+ ..+-.||.|+..+.
T Consensus 186 ~l~~~~yeCmIC~e~I~~t----~~~WSC~s-CYhVFHl~CI~~WArs~ek~~----~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRT----APVWSCKS-CYHVFHLNCIKKWARSSEKTG----QDGWRCPACQSVSK 247 (950)
T ss_pred HHhcCceEEEEeeeecccc----CCceecch-hhhhhhHHHHHHHHHHhhhcc----CccccCCcccchhc
Confidence 3445668999999998653 23555554 999999999999998854322 24468999995443
No 78
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.017 Score=58.43 Aligned_cols=47 Identities=32% Similarity=0.737 Sum_probs=37.0
Q ss_pred cccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
..+|-|||....+ -.||+ |.|. -|-+|-..-|-.. ..||+||..+.-
T Consensus 290 gkeCVIClse~rd--------t~vLP-CRHLCLCs~Ca~~Lr~q~-----------n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRD--------TVVLP-CRHLCLCSGCAKSLRYQT-----------NNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcc--------eEEec-chhhehhHhHHHHHHHhh-----------cCCCccccchHh
Confidence 6899999998443 26776 9996 6999999888433 379999998763
No 79
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=94.90 E-value=0.011 Score=60.74 Aligned_cols=26 Identities=46% Similarity=0.893 Sum_probs=23.3
Q ss_pred ccccccccccccCCCCCCCCCCCCCC
Q 015861 4 RVLCKFFAHGACLKGEHCEFSHDWKD 29 (399)
Q Consensus 4 ~~~Cryf~~G~C~~G~~C~fsHd~~~ 29 (399)
-.+|.||+.|.|+.|.+|+|||.+..
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccchHhhccccccCcccccccCccc
Confidence 36899999999999999999998654
No 80
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.57 E-value=0.026 Score=42.88 Aligned_cols=46 Identities=20% Similarity=0.518 Sum_probs=29.5
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI 253 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~ 253 (399)
......|+|.+.. ++.| ..-..|+|+|-.+.|.+|.+.+. ...||+
T Consensus 8 ~~~~~~CPiT~~~-~~~P-------V~s~~C~H~fek~aI~~~i~~~~---------~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQP-FEDP-------VKSKKCGHTFEKEAILQYIQRNG---------SKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB--SSE-------EEESSS--EEEHHHHHHHCTTTS----------EE-SC
T ss_pred cEeccCCCCcCCh-hhCC-------cCcCCCCCeecHHHHHHHHHhcC---------CCCCCC
Confidence 4456899999997 5556 45558999999999999994332 358998
No 81
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.0092 Score=58.32 Aligned_cols=67 Identities=25% Similarity=0.591 Sum_probs=44.7
Q ss_pred hCcCcccccccccccccCCcc---cccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce-eecCc
Q 015861 190 RRSQEIECSVCLDRVLSKPTA---AERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF-VIPSV 265 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~---~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~-viPs~ 265 (399)
...+|..|.||-..+...-.. -|+.| .| +|+|+|...|||.|---.. .-+||-|+..... -.+|+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty-~L-sCnHvFHEfCIrGWcivGK---------kqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTY-KL-SCNHVFHEFCIRGWCIVGK---------KQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhhe-ee-ecccchHHHhhhhheeecC---------CCCCchHHHHhhHhhhccC
Confidence 345678899998876543200 01233 23 4999999999999986432 2389999987763 45666
Q ss_pred cc
Q 015861 266 IW 267 (399)
Q Consensus 266 ~w 267 (399)
-|
T Consensus 289 pW 290 (328)
T KOG1734|consen 289 PW 290 (328)
T ss_pred cc
Confidence 66
No 82
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.03 Score=47.42 Aligned_cols=29 Identities=31% Similarity=0.779 Sum_probs=25.4
Q ss_pred CCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 220 ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 220 ~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.|+|.|.+-||.+|.++++ .||+|-+.-.
T Consensus 80 ~CNHaFH~hCisrWlktr~-----------vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-----------VCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-----------cCCCcCccee
Confidence 5999999999999999876 7999987643
No 83
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.52 E-value=0.016 Score=61.28 Aligned_cols=54 Identities=31% Similarity=0.650 Sum_probs=40.5
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.-.+.+|+||-|. .+. .|.+.|-|+||.-||..+..+-.. .+ ..+||.|-+...
T Consensus 533 nk~~~~C~lc~d~-aed--------~i~s~ChH~FCrlCi~eyv~~f~~----~~--nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDP-AED--------YIESSCHHKFCRLCIKEYVESFME----NN--NVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCCh-hhh--------hHhhhhhHHHHHHHHHHHHHhhhc----cc--CCCCcccccccc
Confidence 3456899999997 333 478899999999999998876421 12 259999987654
No 84
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.45 E-value=0.017 Score=59.22 Aligned_cols=50 Identities=30% Similarity=0.757 Sum_probs=37.4
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
|.-..|-||-|. +| -.-|- .|+|..|-.|+..|..+... -+||.||-.+.
T Consensus 367 sTFeLCKICaen--dK------dvkIE-PCGHLlCt~CLa~WQ~sd~g---------q~CPFCRcEIK 416 (563)
T KOG1785|consen 367 STFELCKICAEN--DK------DVKIE-PCGHLLCTSCLAAWQDSDEG---------QTCPFCRCEIK 416 (563)
T ss_pred chHHHHHHhhcc--CC------Ccccc-cccchHHHHHHHhhcccCCC---------CCCCceeeEec
Confidence 444579999996 33 22455 49999999999999966531 37999997765
No 85
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.43 E-value=0.046 Score=48.48 Aligned_cols=47 Identities=23% Similarity=0.607 Sum_probs=31.3
Q ss_pred HHHHHhCc-Cccccccccccccc-CCcccccceeecC-----CCCCcccHHHHHHHHhhC
Q 015861 185 HLEALRRS-QEIECSVCLDRVLS-KPTAAERKFGLLS-----ECDHPFCISCIRNWRSSS 237 (399)
Q Consensus 185 ~~~a~~~s-~d~~C~ICle~v~~-k~~~~~~~fgil~-----~C~H~FC~~CI~~W~~~~ 237 (399)
+++..+-. ..++|.||++.|.+ +. ...++ +=-|.||.+|+.+|++.+
T Consensus 16 ~lf~~~w~~~~~EC~IC~~~I~~~~G------vV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 16 RLFNDQWPRCTVECQICFDRIDNNDG------VVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred HHHHHHccccCeeehhhhhhhhcCCC------EEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 44444443 47999999999887 21 12222 234899999999996443
No 86
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.35 E-value=0.016 Score=59.23 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=40.1
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCC
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (399)
.+.-||.|-|.+-.|+. +.--|+ |.|+|.++|+.+....+. .++||-||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e----~LqALp-CsHIfH~rCl~e~L~~n~---------~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNE----RLQALP-CSHIFHLRCLQEILENNG---------TRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcc----cccccc-hhHHHHHHHHHHHHHhCC---------CCCCccHHH
Confidence 45789999999988863 344565 999999999999885443 579999993
No 87
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.048 Score=56.23 Aligned_cols=58 Identities=26% Similarity=0.650 Sum_probs=41.3
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.-..|.||++.-. +-..|-.|+ |+|+||.+|.+.+-...-.+++ ++ ...||.+.-.+.
T Consensus 183 slf~C~ICf~e~~-----G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~-v~--~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 183 SLFDCCICFEEQM-----GQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQ-VS--CLKCPDPKCGSV 240 (445)
T ss_pred hcccceeeehhhc-----Ccceeeecc-cchHHHHHHHHHHHHHhhhcce-ee--eecCCCCCCccc
Confidence 3467999999733 235677776 9999999999998876543332 22 237999887653
No 88
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=93.97 E-value=0.041 Score=32.70 Aligned_cols=19 Identities=26% Similarity=0.873 Sum_probs=16.2
Q ss_pred CCccCCCCCCCCCCCCcCCCC
Q 015861 34 ICTYYQKGFCSYGSRCRYEHV 54 (399)
Q Consensus 34 vCr~f~~G~C~~G~~C~y~H~ 54 (399)
.|+||.. |.+|++|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4888865 999999999993
No 89
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.90 E-value=0.029 Score=65.02 Aligned_cols=89 Identities=22% Similarity=0.506 Sum_probs=54.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCcc
Q 015861 165 HPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDV 244 (399)
Q Consensus 165 hp~~~~~~~~h~~~c~~~~~~~~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~ 244 (399)
||-.--..++|--.|+-- .+ ++..+..|.+|-||+..-+..+. +|-.+|+|+|.+.|.|.-...+-.. ...
T Consensus 3459 H~CGGvkNEE~CLPCl~C-dk-s~tkQD~DDmCmICFTE~L~AAP------~IqL~C~HiFHlqC~R~vLE~RW~G-PRI 3529 (3738)
T KOG1428|consen 3459 HPCGGVKNEEHCLPCLHC-DK-SATKQDADDMCMICFTEALSAAP------AIQLDCSHIFHLQCCRRVLENRWLG-PRI 3529 (3738)
T ss_pred CcccCccchhhccccccc-Ch-hhhhcccCceEEEEehhhhCCCc------ceecCCccchhHHHHHHHHHhcccC-Cee
Confidence 343334455565555431 12 23355678889999987665432 6878999999999987644433211 001
Q ss_pred CcccccCCCCCCCcceee
Q 015861 245 NTALRACPICRKLSYFVI 262 (399)
Q Consensus 245 ~~~~~~CP~CR~~s~~vi 262 (399)
--.-.+||+|..+.+-++
T Consensus 3530 tF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3530 TFGFISCPICKNKINHIV 3547 (3738)
T ss_pred EEeeeecccccchhhhHH
Confidence 111348999999987544
No 90
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=93.77 E-value=0.029 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.854 Sum_probs=22.4
Q ss_pred CCccCchhccCCCCCCCCCcccCCC
Q 015861 130 DRSICSFAAAGNCPRGEKCPHIHGD 154 (399)
Q Consensus 130 ~~~~C~f~~~G~C~~G~~C~y~Hg~ 154 (399)
+..+|-||..|.|..|+.|.|.|+.
T Consensus 91 KSvvCafFk~g~C~KG~kCKFsHdl 115 (343)
T KOG1763|consen 91 KSVVCAFFKQGTCTKGDKCKFSHDL 115 (343)
T ss_pred hHHHHHHHhccCCCCCCcccccchH
Confidence 3478999999999999999999974
No 91
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.061 Score=52.83 Aligned_cols=54 Identities=26% Similarity=0.558 Sum_probs=38.2
Q ss_pred HhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
...+.+.+|+||-+.-. -| +-+. .|+|+||.-||.+=+.... ..+||.|-....
T Consensus 234 s~~t~~~~C~~Cg~~Pt-iP------~~~~-~C~HiyCY~Ci~ts~~~~a---------sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPT-IP------HVIG-KCGHIYCYYCIATSRLWDA---------SFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCC-CC------eeec-cccceeehhhhhhhhcchh---------hcccCccCCCCc
Confidence 34567899999999722 22 3343 5999999999988554321 258999987654
No 92
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.80 E-value=0.23 Score=49.47 Aligned_cols=68 Identities=22% Similarity=0.452 Sum_probs=44.5
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccCchhH
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEK 274 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~~~eK 274 (399)
+.|+.|--.+. .| .-.+.|+|.||-.||..-.-... +.||.|-..-- ++-+ ...+.+|
T Consensus 275 LkCplc~~Llr-np-------~kT~cC~~~fc~eci~~al~dsD----------f~CpnC~rkdv-lld~---l~pD~dk 332 (427)
T COG5222 275 LKCPLCHCLLR-NP-------MKTPCCGHTFCDECIGTALLDSD----------FKCPNCSRKDV-LLDG---LTPDIDK 332 (427)
T ss_pred ccCcchhhhhh-Cc-------ccCccccchHHHHHHhhhhhhcc----------ccCCCcccccc-hhhc---cCccHHH
Confidence 78999988644 34 23368999999999998665554 47999976421 2222 2233456
Q ss_pred HHHHHHHHhh
Q 015861 275 QEIIDSYKSK 284 (399)
Q Consensus 275 ~~li~~yk~~ 284 (399)
++-|+.+.++
T Consensus 333 ~~EvE~~lkk 342 (427)
T COG5222 333 KLEVEKALKK 342 (427)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 93
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=92.78 E-value=0.033 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.788 Sum_probs=22.3
Q ss_pred CCccCchhccCCCCCCCCCcccCCC
Q 015861 130 DRSICSFAAAGNCPRGEKCPHIHGD 154 (399)
Q Consensus 130 ~~~~C~f~~~G~C~~G~~C~y~Hg~ 154 (399)
+..+|-.|.++.|..|+.|.|+|+.
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ 108 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGK 108 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcch
Confidence 4578999999999999999999984
No 94
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.088 Score=54.42 Aligned_cols=55 Identities=27% Similarity=0.565 Sum_probs=37.9
Q ss_pred cccccccc-cccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 194 EIECSVCL-DRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 194 d~~C~ICl-e~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..+|+||+ +.+. .+..|- ...|+|-||..|.++....+... .....||.=+=.+.
T Consensus 146 ~~~C~iC~~e~~~-----~~~~f~-~~~C~H~fC~~C~k~~iev~~~~-----~~~~~C~~~~C~~~ 201 (384)
T KOG1812|consen 146 KEECGICFVEDPE-----AEDMFS-VLKCGHRFCKDCVKQHIEVKLLS-----GTVIRCPHDGCESR 201 (384)
T ss_pred cccCccCcccccc-----HhhhHH-HhcccchhhhHHhHHHhhhhhcc-----CCCccCCCCCCCcc
Confidence 57899999 5422 245566 55799999999999999877533 34557865433333
No 95
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.23 E-value=0.26 Score=48.21 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=49.3
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCcccc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv 268 (399)
......|+|....+-. ..+|..|-.|||+|+.++|.+-. .. ..||+|-++|.- |||-.
T Consensus 110 ~~~~~~CPvt~~~~~~-----~~~fv~l~~cG~V~s~~alke~k--~~----------~~Cp~c~~~f~~~DiI~Ln--- 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNG-----KHKFVYLRPCGCVFSEKALKELK--KS----------KKCPVCGKPFTEEDIIPLN--- 169 (260)
T ss_pred CCceeECCCCCcccCC-----ceeEEEEcCCCCEeeHHHHHhhc--cc----------ccccccCCccccCCEEEec---
Confidence 3456789999988632 36899999999999999999985 11 269999999873 44431
Q ss_pred cCchhHHHHHHHH
Q 015861 269 YTPEEKQEIIDSY 281 (399)
Q Consensus 269 ~~~~eK~~li~~y 281 (399)
...++.+.+.+..
T Consensus 170 p~~ee~~~l~~~~ 182 (260)
T PF04641_consen 170 PPEEELEKLRERM 182 (260)
T ss_pred CCccHHHHHHHHH
Confidence 1233555554443
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.55 E-value=0.14 Score=46.59 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=10.6
Q ss_pred ccccCCCCCCCcc
Q 015861 247 ALRACPICRKLSY 259 (399)
Q Consensus 247 ~~~~CP~CR~~s~ 259 (399)
....||+||-.+.
T Consensus 79 ~~L~CPLCRG~V~ 91 (162)
T PF07800_consen 79 PELACPLCRGEVK 91 (162)
T ss_pred ccccCccccCcee
Confidence 4678999999875
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.1 Score=52.19 Aligned_cols=34 Identities=29% Similarity=0.809 Sum_probs=26.3
Q ss_pred cceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 213 RKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 213 ~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..||-+..|.|+||++|-|.-. .|.||.|-..+.
T Consensus 101 ~IYGRmIPCkHvFCl~CAr~~~-------------dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 101 AIYGRMIPCKHVFCLECARSDS-------------DKICPLCDDRVQ 134 (389)
T ss_pred eeeecccccchhhhhhhhhcCc-------------cccCcCcccHHH
Confidence 3678888999999999976322 368999976654
No 98
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.50 E-value=0.27 Score=36.17 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=22.1
Q ss_pred ccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
|++|+|.+-. .++.|.-= .|++..|+.|-.+-+.... ..||-||++.
T Consensus 1 cp~C~e~~d~----~d~~~~PC-~Cgf~IC~~C~~~i~~~~~----------g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE----TDKDFYPC-ECGFQICRFCYHDILENEG----------GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C----CCTT--SS-TTS----HHHHHHHTTSS-----------SB-TTT--B-
T ss_pred CCCccccccc----CCCccccC-cCCCcHHHHHHHHHHhccC----------CCCCCCCCCC
Confidence 7899998632 24454333 5999999999766664321 3899999875
No 99
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=0.25 Score=43.87 Aligned_cols=64 Identities=20% Similarity=0.604 Sum_probs=35.5
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhh-CCCCCCccCcccccCCCCCCCcceeecCcccc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSS-SPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~-~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv 268 (399)
..|.+|+||+..-+ ..+|+|. |.-|-.+.-.. ...-...++++.-.|-.||+....+..+..|+
T Consensus 63 ~ddatC~IC~KTKF------------ADG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf 127 (169)
T KOG3799|consen 63 GDDATCGICHKTKF------------ADGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWF 127 (169)
T ss_pred CcCcchhhhhhccc------------ccccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHH
Confidence 56789999999833 3467774 33342221111 11111123566667888877766666666664
No 100
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=89.90 E-value=0.27 Score=49.10 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=46.2
Q ss_pred Cccccccccc-cccCCCCCCCCCCCCCC-----------CCCCCCccCC-CCCCCCCCCCcCCCCCCCCC
Q 015861 3 KRVLCKFFAH-GACLKGEHCEFSHDWKD-----------PPNNICTYYQ-KGFCSYGSRCRYEHVKPSRS 59 (399)
Q Consensus 3 k~~~Cryf~~-G~C~~G~~C~fsHd~~~-----------~~~~vCr~f~-~G~C~~G~~C~y~H~~~~~~ 59 (399)
++.+|.-|.. |.|.+|..|.|.|.-.. .....|+-++ .|.|.+|.+|.++|.+...+
T Consensus 273 rTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~ 342 (351)
T COG5063 273 RTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLD 342 (351)
T ss_pred ccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhh
Confidence 5788998874 99999999999996432 1346798887 68999999999999887643
No 101
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=0.041 Score=54.47 Aligned_cols=42 Identities=31% Similarity=0.826 Sum_probs=30.0
Q ss_pred cccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+..|.|||+...+ -++..|+|. -|.+|-.. ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D---------CvfLeCGHmVtCt~CGkr---------------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---------CVFLECGHMVTCTKCGKR---------------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---------eEEeecCcEEeehhhccc---------------cccCchHHHHHH
Confidence 6789999998554 345569995 58888432 236999998654
No 102
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.20 E-value=0.14 Score=49.41 Aligned_cols=45 Identities=31% Similarity=0.918 Sum_probs=31.1
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+.|+-|.-. | +...| .|++|.|+||..|...=. ...||+||+...
T Consensus 4 VhCn~C~~~----~--~~~~f-~LTaC~HvfC~~C~k~~~-------------~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRF----P--SQDPF-FLTACRHVFCEPCLKASS-------------PDVCPLCKKSIR 48 (233)
T ss_pred EEecccccc----C--CCCce-eeeechhhhhhhhcccCC-------------ccccccccceee
Confidence 568888764 2 23456 455799999999975321 127999999865
No 103
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=88.70 E-value=0.17 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.874 Sum_probs=20.4
Q ss_pred CCCCccCCCC---CCCCCCCCcCCCCCC
Q 015861 32 NNICTYYQKG---FCSYGSRCRYEHVKP 56 (399)
Q Consensus 32 ~~vCr~f~~G---~C~~G~~C~y~H~~~ 56 (399)
..+|.-...| .|.||++|+|.|...
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ 103 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIE 103 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHH
Confidence 4578877765 799999999999754
No 104
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=0.16 Score=51.83 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=23.4
Q ss_pred cccccccccccCCCCCCCCCCCCCC
Q 015861 5 VLCKFFAHGACLKGEHCEFSHDWKD 29 (399)
Q Consensus 5 ~~Cryf~~G~C~~G~~C~fsHd~~~ 29 (399)
++|+||..|.|+.|+.|+|+|++.+
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcccccccccceeeeeccCch
Confidence 7999999999999999999998763
No 105
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=88.09 E-value=0.18 Score=47.52 Aligned_cols=26 Identities=31% Similarity=1.077 Sum_probs=22.9
Q ss_pred CCCCccCC-CCCCCCCCCCcCCCCCCC
Q 015861 32 NNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 32 ~~vCr~f~-~G~C~~G~~C~y~H~~~~ 57 (399)
..||+.|. +|+|-||+.|.|+|.+.+
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 45899885 999999999999998865
No 106
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.59 E-value=0.39 Score=49.27 Aligned_cols=38 Identities=21% Similarity=0.568 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHhhCCCCCCccC--cccccCCCCCCCcc
Q 015861 222 DHPFCISCIRNWRSSSPTSGMDVN--TALRACPICRKLSY 259 (399)
Q Consensus 222 ~H~FC~~CI~~W~~~~~~~~~~~~--~~~~~CP~CR~~s~ 259 (399)
.-..|++|+-+|..++|+..-... ...-.||+||++|-
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 334489999999999885321111 13458999999864
No 107
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=86.17 E-value=0.52 Score=29.51 Aligned_cols=20 Identities=30% Similarity=1.034 Sum_probs=10.3
Q ss_pred CCccCCCC-CCCCCCCCcCCCC
Q 015861 34 ICTYYQKG-FCSYGSRCRYEHV 54 (399)
Q Consensus 34 vCr~f~~G-~C~~G~~C~y~H~ 54 (399)
+|.|-+.| .|. .+.|.|+|.
T Consensus 2 lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCccccCCCeeC-CCCCCcccc
Confidence 45555554 554 255555553
No 108
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.99 E-value=0.32 Score=53.77 Aligned_cols=46 Identities=30% Similarity=0.857 Sum_probs=34.1
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..|.||++ .+. .++..|+|.||.+|+.+-...... ..||+||....
T Consensus 455 ~~c~ic~~--~~~--------~~it~c~h~~c~~c~~~~i~~~~~---------~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDS--------FFITRCGHDFCVECLKKSIQQSEN---------APCPLCRNVLK 500 (674)
T ss_pred cccccccc--ccc--------ceeecccchHHHHHHHhccccccC---------CCCcHHHHHHH
Confidence 89999999 443 366679999999999884433321 27999997653
No 109
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.59 E-value=0.53 Score=47.93 Aligned_cols=53 Identities=23% Similarity=0.597 Sum_probs=40.9
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceee
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~vi 262 (399)
-.++|..|+||.-.-.+ ++...|+|.-|..||.+-.-.. +.|=.|+++..-+|
T Consensus 418 p~sEd~lCpICyA~pi~---------Avf~PC~H~SC~~CI~qHlmN~-----------k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPIN---------AVFAPCSHRSCYGCITQHLMNC-----------KRCFFCKTTVIDVI 470 (489)
T ss_pred CCcccccCcceecccch---------hhccCCCCchHHHHHHHHHhcC-----------CeeeEecceeeehh
Confidence 35899999999986332 5667799999999998876544 36999998876444
No 110
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.44 E-value=0.32 Score=49.54 Aligned_cols=49 Identities=33% Similarity=0.629 Sum_probs=34.5
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
+....|.||++..++ +..+ .|+|+-| |+---..- .+||+||.....+++
T Consensus 303 ~~p~lcVVcl~e~~~--------~~fv-pcGh~cc--ct~cs~~l------------~~CPvCR~rI~~~~k 351 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS--------AVFV-PCGHVCC--CTLCSKHL------------PQCPVCRQRIRLVRK 351 (355)
T ss_pred CCCCceEEecCCccc--------eeee-cCCcEEE--chHHHhhC------------CCCchhHHHHHHHHH
Confidence 445689999998544 2455 5999977 88765532 369999987765443
No 111
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=84.68 E-value=0.56 Score=29.37 Aligned_cols=20 Identities=40% Similarity=0.944 Sum_probs=17.4
Q ss_pred ccccccccc-ccCCCCCCCCCC
Q 015861 5 VLCKFFAHG-ACLKGEHCEFSH 25 (399)
Q Consensus 5 ~~Cryf~~G-~C~~G~~C~fsH 25 (399)
.+|.|-+.| .|.. +.|.|.|
T Consensus 1 ~lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 1 PLCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCCccccCCCeeCC-CCCCccc
Confidence 479999987 9974 8999999
No 112
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.68 E-value=0.49 Score=38.98 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=28.7
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHH
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIR 231 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~ 231 (399)
.-+.+..|+||-..|..+ .|.+.+ |+|+|+..|++
T Consensus 74 ~i~~~~~C~vC~k~l~~~------~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNS------VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCc------eEEEeC-CCeEEeccccc
Confidence 346678899999998764 588887 88999999985
No 113
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.68 E-value=0.82 Score=45.00 Aligned_cols=52 Identities=27% Similarity=0.640 Sum_probs=38.6
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
-.+|.||=+.+-.- ..++.-.+|. |+|+||-.|+.+-..... -.||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~--~~~~~p~~l~-c~h~~c~~c~~~l~~~~~----------i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSE--DGDHIPRVLK-CGHTICQNCASKLLGNSR----------ILCPFCRETT 54 (296)
T ss_pred CCceeecCcccccc--CcccCCcccc-cCceehHhHHHHHhcCce----------eeccCCCCcc
Confidence 35799999985443 3445555665 999999999988776542 3689999986
No 114
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.75 E-value=1.2 Score=43.50 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=46.2
Q ss_pred HhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc--eeecC
Q 015861 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~--~viPs 264 (399)
...|+-..|+||-+.+.+ .+ .-++|..|+|+||++|..+..... ..||+|-.+.. -||+-
T Consensus 216 ~a~s~ryiCpvtrd~LtN-t~----~ca~Lr~sg~Vv~~ecvEklir~D-----------~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 216 IAASKRYICPVTRDTLTN-TT----PCAVLRPSGHVVTKECVEKLIRKD-----------MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred hhhccceecccchhhhcC-cc----ceEEeccCCcEeeHHHHHHhcccc-----------ccccCCCCcCcccceEee
Confidence 445678899999998654 32 568999999999999999988643 37999988765 25543
No 115
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.66 E-value=2.5 Score=37.59 Aligned_cols=53 Identities=26% Similarity=0.754 Sum_probs=39.1
Q ss_pred CcCcccccccccccccCCcccccceeecCC--CCCcccHHHHHH-HHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSE--CDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~--C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
...-.+|.||-|.-. |.+| +-|+ |+-.-|--|--+ |.-.+. -..||+|++.|.
T Consensus 77 d~~lYeCnIC~etS~------ee~F-LKPneCCgY~iCn~Cya~LWK~~~~---------ypvCPvCkTSFK 132 (140)
T PF05290_consen 77 DPKLYECNICKETSA------EERF-LKPNECCGYSICNACYANLWKFCNL---------YPVCPVCKTSFK 132 (140)
T ss_pred CCCceeccCcccccc------hhhc-CCcccccchHHHHHHHHHHHHHccc---------CCCCCccccccc
Confidence 346689999999733 3455 3333 999999999766 886653 358999999875
No 116
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.31 E-value=0.43 Score=52.43 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=36.6
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
-+..+|+||++.++++ ++..|+|.||..|+..-...+.. -..||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~p---------~~~kc~~~~l~~~~n~~f~~~~~--------~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP---------SLLKCDHIFLKFCLNKLFESKKG--------PKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeecc---------chhhhhHHHHhhhhhceeeccCc--------cccchhhhhhh
Confidence 3578999999998874 66789999999998763222211 25799999543
No 117
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.25 E-value=1.4 Score=44.85 Aligned_cols=54 Identities=22% Similarity=0.633 Sum_probs=39.4
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v 261 (399)
+..++..|-||-+.+. |.-+..|+|.-|.-|--.-|.--. .+.||+||+.-.-|
T Consensus 57 tDEen~~C~ICA~~~T---------Ys~~~PC~H~~CH~Ca~RlRALY~---------~K~C~~CrTE~e~V 110 (493)
T COG5236 57 TDEENMNCQICAGSTT---------YSARYPCGHQICHACAVRLRALYM---------QKGCPLCRTETEAV 110 (493)
T ss_pred cccccceeEEecCCce---------EEEeccCCchHHHHHHHHHHHHHh---------ccCCCccccccceE
Confidence 4566788999999753 344455999999999766554321 36899999887654
No 118
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=81.16 E-value=1.2 Score=44.81 Aligned_cols=67 Identities=24% Similarity=0.649 Sum_probs=44.8
Q ss_pred CcccccccccccccCCcccccceeecCCC--CCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccC
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSEC--DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C--~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~ 270 (399)
+=.+|+||.+.|. .| |.. | +|.-|.+|-.+-. ..||.||..+..+ -+
T Consensus 47 ~lleCPvC~~~l~-~P--------i~Q-C~nGHlaCssC~~~~~--------------~~CP~Cr~~~g~~-R~------ 95 (299)
T KOG3002|consen 47 DLLDCPVCFNPLS-PP--------IFQ-CDNGHLACSSCRTKVS--------------NKCPTCRLPIGNI-RC------ 95 (299)
T ss_pred hhccCchhhccCc-cc--------cee-cCCCcEehhhhhhhhc--------------ccCCccccccccH-HH------
Confidence 3467999999854 44 553 7 5999999976322 3799999987632 11
Q ss_pred chhHHHHHHHHHhhcccCCccccccC
Q 015861 271 PEEKQEIIDSYKSKLKSIDCKHFNFG 296 (399)
Q Consensus 271 ~~eK~~li~~yk~~~~~~~ck~f~~g 296 (399)
-..+++|+. .-.||||-+.|
T Consensus 96 -~amEkV~e~-----~~vpC~~~~~G 115 (299)
T KOG3002|consen 96 -RAMEKVAEA-----VLVPCKNAKLG 115 (299)
T ss_pred -HHHHHHHHh-----ceecccccccC
Confidence 234455544 23889987755
No 119
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=80.45 E-value=0.86 Score=34.49 Aligned_cols=45 Identities=31% Similarity=0.622 Sum_probs=33.3
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
+..|-.|... -.+ +++..|+|.-|..|-.-|+.+ .||.|-+++.+
T Consensus 7 ~~~~~~~~~~-~~~--------~~~~pCgH~I~~~~f~~~rYn-------------gCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFV-GTK--------GTVLPCGHLICDNCFPGERYN-------------GCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccc-ccc--------cccccccceeeccccChhhcc-------------CCCCCCCcccC
Confidence 4556666664 222 667779999999998888754 59999998763
No 120
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=80.43 E-value=2.1 Score=39.10 Aligned_cols=60 Identities=18% Similarity=0.442 Sum_probs=40.3
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcc---cHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee---ecCc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPF---CISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV---IPSV 265 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~F---C~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v---iPs~ 265 (399)
..+..|=||.+.- + + +. -.=.|..+. ..+|+++|.+.+. ..+|++|..++++. -|-.
T Consensus 6 ~~~~~CRIC~~~~-~-~---~~---~PC~CkGs~k~VH~sCL~rWi~~s~---------~~~CeiC~~~Y~i~~~~kpl~ 68 (162)
T PHA02825 6 LMDKCCWICKDEY-D-V---VT---NYCNCKNENKIVHKECLEEWINTSK---------NKSCKICNGPYNIKKNYKKCT 68 (162)
T ss_pred CCCCeeEecCCCC-C-C---cc---CCcccCCCchHHHHHHHHHHHhcCC---------CCcccccCCeEEEEEecCCCc
Confidence 3567899999871 1 1 11 133466644 8999999998764 35899999998864 2444
Q ss_pred ccc
Q 015861 266 IWY 268 (399)
Q Consensus 266 ~wv 268 (399)
.|.
T Consensus 69 ~W~ 71 (162)
T PHA02825 69 KWR 71 (162)
T ss_pred ccc
Confidence 554
No 121
>PHA02862 5L protein; Provisional
Probab=77.91 E-value=1.4 Score=39.71 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=33.1
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
+..|=||.+.- +. +.++-.=.+=.---..+|+.+|.+.++ ..+||+|+.++.+
T Consensus 2 ~diCWIC~~~~-~e----~~~PC~C~GS~K~VHq~CL~~WIn~S~---------k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-DE----RNNFCGCNEEYKVVHIKCMQLWINYSK---------KKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-CC----CcccccccCcchhHHHHHHHHHHhcCC---------CcCccCCCCeEEE
Confidence 45799999972 11 111111011134456899999997654 3689999999863
No 122
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=77.62 E-value=1.4 Score=44.53 Aligned_cols=46 Identities=26% Similarity=0.601 Sum_probs=34.7
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCC
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (399)
.....|+||+..+.+ | -+|.-=|-+||..||-++....+ .||+=-.
T Consensus 298 ~~~~~CpvClk~r~N-p-------tvl~vSGyVfCY~Ci~~Yv~~~~-----------~CPVT~~ 343 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN-P-------TVLEVSGYVFCYPCIFSYVVNYG-----------HCPVTGY 343 (357)
T ss_pred CccccChhHHhccCC-C-------ceEEecceEEeHHHHHHHHHhcC-----------CCCccCC
Confidence 345789999999665 3 35555699999999999998543 7997443
No 123
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.23 E-value=3.2 Score=43.70 Aligned_cols=43 Identities=21% Similarity=0.634 Sum_probs=32.9
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSG 241 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~ 241 (399)
...+..|+||++.+.. .-+...|+|.||..|++.....+-..+
T Consensus 67 ~~~~~~c~ic~~~~~~--------~~~~~~c~H~~c~~cw~~yl~~kI~~~ 109 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--------EIIGLGCGHPFCPPCWTGYLGTKIHEG 109 (444)
T ss_pred CCccccCCcccCCCcc--------hhhhcCCCcHHHHHHHHHHhhheeecc
Confidence 3456899999998432 245567999999999999998875443
No 124
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=75.70 E-value=1 Score=33.44 Aligned_cols=29 Identities=34% Similarity=0.793 Sum_probs=20.3
Q ss_pred cCCCCCCCcceeecCcccccCchhHHHHHHHHHhhcccCC
Q 015861 250 ACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKSID 289 (399)
Q Consensus 250 ~CP~CR~~s~~viPs~~wv~~~~eK~~li~~yk~~~~~~~ 289 (399)
.||+|..++. .+.+++||+.|+..+..++
T Consensus 22 ~CPlC~r~l~-----------~e~~~~li~~~~~~i~~~~ 50 (54)
T PF04423_consen 22 CCPLCGRPLD-----------EEHRQELIKKYKSEIEELP 50 (54)
T ss_dssp E-TTT--EE------------HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCC-----------HHHHHHHHHHHHHHHHhhh
Confidence 8999998763 4677999999998887553
No 125
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=74.55 E-value=1.1 Score=52.39 Aligned_cols=50 Identities=32% Similarity=0.823 Sum_probs=40.0
Q ss_pred HhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCC
Q 015861 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (399)
...+.-..|.||++.+... |....|+|.+|-.|+.-|..++. .||+|...
T Consensus 1148 ~~~~~~~~c~ic~dil~~~--------~~I~~cgh~~c~~c~~~~l~~~s-----------~~~~~ksi 1197 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQ--------GGIAGCGHEPCCRCDELWLYASS-----------RCPICKSI 1197 (1394)
T ss_pred HHhhcccchHHHHHHHHhc--------CCeeeechhHhhhHHHHHHHHhc-----------cCcchhhh
Confidence 4556677999999986543 55557999999999999998864 79999843
No 126
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=73.98 E-value=1.1 Score=44.73 Aligned_cols=58 Identities=26% Similarity=0.614 Sum_probs=39.6
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHH------------------HHhhCCCCCCccCcccccCC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN------------------WRSSSPTSGMDVNTALRACP 252 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~------------------W~~~~~~~~~~~~~~~~~CP 252 (399)
.-....|.|||=-+-+++ -| +.+.|.|-|.+.|+-. |++... .+....||
T Consensus 112 n~p~gqCvICLygfa~~~-----~f-t~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~------~~~eavcp 179 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSP-----AF-TVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMK------EQVEAVCP 179 (368)
T ss_pred CCCCCceEEEEEeecCCC-----ce-eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHhhhhh
Confidence 345678999999988776 24 4456999999999754 443221 12233599
Q ss_pred CCCCCcce
Q 015861 253 ICRKLSYF 260 (399)
Q Consensus 253 ~CR~~s~~ 260 (399)
+||....+
T Consensus 180 Vcre~i~~ 187 (368)
T KOG4445|consen 180 VCRERIKI 187 (368)
T ss_pred Hhhhhccc
Confidence 99987754
No 127
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=73.52 E-value=3.3 Score=29.56 Aligned_cols=40 Identities=23% Similarity=0.678 Sum_probs=21.9
Q ss_pred ccccccccccCCcccccceeecC---CCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLS---ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~---~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
|.+|.++|.. |+.= +|+=.+...|+.++.+.... ..||.|
T Consensus 1 C~~C~~iv~~---------G~~C~~~~C~~r~H~~C~~~y~r~~~~---------~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---------GQRCSNRDCNVRLHDDCFKKYFRHRSN---------PKCPNC 43 (43)
T ss_dssp -TTT-SB-SS---------SEE-SS--S--EE-HHHHHHHTTT-SS----------B-TTT
T ss_pred CcccchhHee---------eccCCCCccCchHHHHHHHHHHhcCCC---------CCCcCC
Confidence 7789998765 5543 38889999999997665431 379987
No 128
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=71.70 E-value=3.3 Score=42.19 Aligned_cols=52 Identities=25% Similarity=0.580 Sum_probs=36.7
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
++..|+.|||.+.- .++.|--- .|+.-.|.=|-..-|..-+ ..||-||....
T Consensus 13 eed~cplcie~mdi----tdknf~pc-~cgy~ic~fc~~~irq~ln----------grcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDI----TDKNFFPC-PCGYQICQFCYNNIRQNLN----------GRCPACRRKYD 64 (480)
T ss_pred ccccCccccccccc----ccCCcccC-CcccHHHHHHHHHHHhhcc----------CCChHhhhhcc
Confidence 34559999998532 35556444 4999999999777665532 37999998764
No 129
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.81 E-value=1.3 Score=44.12 Aligned_cols=26 Identities=35% Similarity=1.088 Sum_probs=22.7
Q ss_pred CCCCccCC-CCCCCCCCCCcCCCCCCC
Q 015861 32 NNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 32 ~~vCr~f~-~G~C~~G~~C~y~H~~~~ 57 (399)
..+|+-|. +|+|.||+.|.|.|.+..
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhh
Confidence 45899996 999999999999998875
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.32 E-value=2.5 Score=43.04 Aligned_cols=28 Identities=39% Similarity=0.841 Sum_probs=24.1
Q ss_pred CCCCccCchhccCCCCCCCCCcccCCCC
Q 015861 128 PADRSICSFAAAGNCPRGEKCPHIHGDT 155 (399)
Q Consensus 128 ~~~~~~C~f~~~G~C~~G~~C~y~Hg~~ 155 (399)
.....+|+|+..|.|.+|++|.|.|-..
T Consensus 158 rn~p~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 158 RNRPHICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred CCCCccccceeeccccccccccccccCC
Confidence 3445789999999999999999999754
No 131
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.96 E-value=3.2 Score=40.73 Aligned_cols=71 Identities=20% Similarity=0.399 Sum_probs=48.8
Q ss_pred CcCcccccccccccccCCcccccceeecCCC-----CCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSEC-----DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV 265 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C-----~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~ 265 (399)
...|..|=||+..=.+. ++=.-...| .|--.-+|+..|.+.++. + .+...-+||+|++..-.|.|..
T Consensus 17 ~e~eR~CWiCF~TdeDn-----~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~--n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 17 QELERCCWICFATDEDN-----RLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-G--NPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred cccceeEEEEeccCccc-----chhhhcccccccCccHHHHHHHHHHHHhHHhc-C--CCCceeechhhcchheeecccc
Confidence 34567899999972221 221123335 466788999999998874 1 1234568999999999999987
Q ss_pred cccc
Q 015861 266 IWYY 269 (399)
Q Consensus 266 ~wv~ 269 (399)
-|+.
T Consensus 89 ~~~~ 92 (293)
T KOG3053|consen 89 GPFD 92 (293)
T ss_pred ChHH
Confidence 7654
No 132
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=68.48 E-value=3.5 Score=29.89 Aligned_cols=42 Identities=33% Similarity=0.750 Sum_probs=25.0
Q ss_pred ccccccccccCCcccccceeecCCCC--C---cccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECD--H---PFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~--H---~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
|=||++.-.+.+ .++..|. = .-..+|+++|...+. ..+|++|
T Consensus 1 CrIC~~~~~~~~-------~li~pC~C~Gs~~~vH~~CL~~W~~~~~---------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-------PLISPCRCKGSMKYVHRSCLERWIRESG---------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--------EE-SSS-SSCCGSEECCHHHHHHHHHT----------SB-TTT
T ss_pred CeEeCCcCCCCC-------ceecccccCCCcchhHHHHHHHHHHhcC---------CCcCCCC
Confidence 669999744321 2344454 2 446789999999753 2469987
No 133
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=67.45 E-value=2 Score=41.87 Aligned_cols=55 Identities=31% Similarity=0.659 Sum_probs=43.2
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCC--CCCCCc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP--ICRKLS 258 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP--~CR~~s 258 (399)
+.+|..|+||-...|-.| +-+|-|-|.|-|-.|-+|...-.+..+ ..|| .|-+..
T Consensus 7 ~~~d~~CPvCksDrYLnP---dik~linPECyHrmCESCvdRIFs~Gp----------AqCP~~gC~kIL 63 (314)
T COG5220 7 EMEDRRCPVCKSDRYLNP---DIKILINPECYHRMCESCVDRIFSRGP----------AQCPYKGCGKIL 63 (314)
T ss_pred hhhcccCCccccccccCC---CeEEEECHHHHHHHHHHHHHHHhcCCC----------CCCCCccHHHHH
Confidence 346778999999989877 456777888999999999988776544 3799 886543
No 134
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.52 E-value=4.8 Score=37.58 Aligned_cols=64 Identities=20% Similarity=0.490 Sum_probs=40.5
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
..||||+..-++-..+ +.. .--..|+..|..-|+..|.+.-..+...-+-+-..||-|-.+...
T Consensus 166 ~~cgicyayqldGTip-Dqt-CdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIP-DQT-CDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccc-ccc-ccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 5799998765542211 111 122359999999999999986433222223355689999987653
No 135
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=65.57 E-value=7.5 Score=31.53 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=26.4
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
......|-||-|.|--.. ....|..-..|+-.-|..|..-=|+.. ...||+|++.+...--+
T Consensus 6 ~~~~qiCqiCGD~VGl~~--~Ge~FVAC~eC~fPvCr~CyEYErkeg----------~q~CpqCkt~ykr~kgs 67 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTE--NGEVFVACHECAFPVCRPCYEYERKEG----------NQVCPQCKTRYKRHKGS 67 (80)
T ss_dssp --SS-B-SSS--B--B-S--SSSB--S-SSS-----HHHHHHHHHTS-----------SB-TTT--B----TT-
T ss_pred hcCCcccccccCccccCC--CCCEEEEEcccCCccchhHHHHHhhcC----------cccccccCCCcccccCC
Confidence 345578999999987654 466899999999999999986555432 24899999887654333
No 136
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.05 E-value=3.6 Score=46.50 Aligned_cols=36 Identities=28% Similarity=0.590 Sum_probs=29.4
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHH
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (399)
..+..|.||+-.++.+| |-+-+ |+|.|..+||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~p------F~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKP------FYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCc------ceeee-ccchHHHHHHHHHH
Confidence 45678999999999886 65665 99999999987643
No 137
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=0.55 Score=43.02 Aligned_cols=62 Identities=24% Similarity=0.470 Sum_probs=38.5
Q ss_pred CCCCCcCCcccCCCCChhHHHHHHHHHHHHHHH--HHHHhCcCcccccccccccccCCcccccceeecCCCCCc
Q 015861 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKH--LEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP 224 (399)
Q Consensus 153 g~~c~~C~~~~lhp~~~~~~~~h~~~c~~~~~~--~~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~ 224 (399)
|..|++|.|.++. .| .+-|.--|..+-+. -+.+.....-+|.||||.+.. ....+-|+ |-=+
T Consensus 138 g~KCPvC~K~V~s-Dd---~e~HlvMCLtkPrlsYNdDVL~ddkGECvICLEdL~~-----GdtIARLP-CLCI 201 (205)
T KOG0801|consen 138 GMKCPVCHKVVPS-DD---AEIHLVMCLTKPRLSYNDDVLKDDKGECVICLEDLEA-----GDTIARLP-CLCI 201 (205)
T ss_pred CccCCccccccCC-Cc---ceEEEEEEecccccccccchhcccCCcEEEEhhhccC-----CCceeccc-eEEE
Confidence 5779999998762 22 34466666554432 244555566799999999654 23456666 5433
No 138
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.17 E-value=7.4 Score=38.85 Aligned_cols=49 Identities=29% Similarity=0.651 Sum_probs=38.7
Q ss_pred cccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
.|++|-..+|-.|. -+.....|+|.-|-+|...-....+ ..||.|-+..
T Consensus 2 ~Cp~CKt~~Y~np~----lk~~in~C~H~lCEsCvd~iF~~g~----------~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD----LKLMINECGHRLCESCVDRIFSLGP----------AQCPECMVIL 50 (300)
T ss_pred CCcccccceecCcc----ceeeeccccchHHHHHHHHHHhcCC----------CCCCcccchh
Confidence 59999999888763 4455567999999999988776554 3799998764
No 139
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=61.04 E-value=6.6 Score=39.04 Aligned_cols=95 Identities=26% Similarity=0.556 Sum_probs=60.8
Q ss_pred HhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccc
Q 015861 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv 268 (399)
++.+.+..|+||.|.++.- ...-+.++ |+|.--+.|.+.-.... ..||+|-+ .... +.+|=
T Consensus 153 ~e~~~~~ncPic~e~l~~s----~~~~~~~~-CgH~~h~~cf~e~~~~~-----------y~CP~C~~-~~d~--~~~~~ 213 (276)
T KOG1940|consen 153 VERSSEFNCPICKEYLFLS----FEDAGVLK-CGHYMHSRCFEEMICEG-----------YTCPICSK-PGDM--SHYFR 213 (276)
T ss_pred hhhcccCCCchhHHHhccc----cccCCccC-cccchHHHHHHHHhccC-----------CCCCcccc-hHHH--HHHHH
Confidence 4455666699999998763 33445665 99999999988877654 48999998 3321 23331
Q ss_pred cCchhHHHHHHH------HHhhcccCCccccccCCCCCCCCCCceeeccCC
Q 015861 269 YTPEEKQEIIDS------YKSKLKSIDCKHFNFGNGNCPFGTSCFYKHMVK 313 (399)
Q Consensus 269 ~~~~eK~~li~~------yk~~~~~~~ck~f~~g~g~Cpfg~~C~y~H~~~ 313 (399)
--+++|.. |+..+..+-|+ .|.+|.+=.|--++-
T Consensus 214 ----~~d~~l~~~~~p~~y~~~~~~i~cn-------dC~~~~~~k~~~l~~ 253 (276)
T KOG1940|consen 214 ----KLDKELAGSPMPEEYKNKTQDILCN-------DCGSGTNVKYHILYH 253 (276)
T ss_pred ----HHHHHHhcCCCCchhhchhheeecc-------CCCCCCccceehhhh
Confidence 12234544 77777766554 566666555554443
No 140
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.45 E-value=5.6 Score=34.41 Aligned_cols=89 Identities=20% Similarity=0.371 Sum_probs=48.9
Q ss_pred CCCCcCCcccCCCCChhHHHHHHHHHHHHHHHHHHHhCcCcccccccccccccCCcc------cccceeecCCCCCcccH
Q 015861 154 DTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTA------AERKFGLLSECDHPFCI 227 (399)
Q Consensus 154 ~~c~~C~~~~lhp~~~~~~~~h~~~c~~~~~~~~a~~~s~d~~C~ICle~v~~k~~~------~~~~fgil~~C~H~FC~ 227 (399)
..|.+||+..+.+..-+ |+=|----...-++....+......|--|+..+.+.+.. ..-+|. =+.|.+.||+
T Consensus 16 ~~CpiCgLtLVss~HLA-RSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~-C~~C~~~FC~ 93 (112)
T TIGR00622 16 VECPICGLTLILSTHLA-RSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYV-CAVCKNVFCV 93 (112)
T ss_pred CcCCcCCCEEeccchHH-HhhhccCCCcccccccccccCCCCcccCcCCCCCCccccccccccccccee-CCCCCCcccc
Confidence 56889999866555443 222210000101010001122335699999987654320 112343 3569999999
Q ss_pred HHHHHHHhhCCCCCCccCcccccCCCCC
Q 015861 228 SCIRNWRSSSPTSGMDVNTALRACPICR 255 (399)
Q Consensus 228 ~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (399)
+|=.-|-..- ..||-|-
T Consensus 94 dCD~fiHe~L-----------h~CPGC~ 110 (112)
T TIGR00622 94 DCDVFVHESL-----------HCCPGCI 110 (112)
T ss_pred ccchhhhhhc-----------cCCcCCC
Confidence 9976666543 4799986
No 141
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=57.43 E-value=6.8 Score=43.98 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=36.2
Q ss_pred cccccccccccccCCcccccceeec--CCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLL--SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil--~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
...|.||.-.+-. + ...|+|+ .+|.|.||..||.+|++.-- ..++.-.|+.|..-+.
T Consensus 96 s~Ss~~C~~E~S~-~---~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~-----~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSP-D---VDSSNICPVQTHVENQCPNCLKSCNDQLE-----ESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCC-c---ccccCcCchhhhhhhhhhHHHHHHHHHhh-----ccccccccccHHHHhh
Confidence 3455555544221 2 2234554 48999999999999998643 2344567888876554
No 142
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=57.02 E-value=5.5 Score=41.89 Aligned_cols=35 Identities=34% Similarity=0.804 Sum_probs=28.0
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHh
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (399)
.+++.|+||... |+.| -||+ |+|..|.-|-+.-.-
T Consensus 2 eeelkc~vc~~f-~~ep-------iil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSF-YREP-------IILP-CSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhh-ccCc-------eEee-cccHHHHHHHHhhcc
Confidence 467899999985 7766 4665 999999999987543
No 143
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=56.83 E-value=4.9 Score=41.03 Aligned_cols=23 Identities=35% Similarity=1.070 Sum_probs=14.6
Q ss_pred cccccccccccCCCCCCCCCCCC
Q 015861 5 VLCKFFAHGACLKGEHCEFSHDW 27 (399)
Q Consensus 5 ~~Cryf~~G~C~~G~~C~fsHd~ 27 (399)
-+|-||+.|.|++|..|.|.|+.
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEk 184 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEK 184 (377)
T ss_pred ccccceeeccccccccccccccC
Confidence 35666666666666666666654
No 144
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.04 E-value=6.6 Score=39.30 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=26.6
Q ss_pred CCCcccHHHHHHHHhhCCCCCCcc--CcccccCCCCCCCcc
Q 015861 221 CDHPFCISCIRNWRSSSPTSGMDV--NTALRACPICRKLSY 259 (399)
Q Consensus 221 C~H~FC~~CI~~W~~~~~~~~~~~--~~~~~~CP~CR~~s~ 259 (399)
|.-..|.+|+-+|.-.+|..--.. -...-+||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 667788999999998877310000 023458999999864
No 145
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=53.05 E-value=34 Score=37.83 Aligned_cols=103 Identities=24% Similarity=0.486 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 015861 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVP 84 (399)
Q Consensus 5 ~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~~C~y~H~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~~ 84 (399)
..|+|+.. |. +..|.|.|.... .+|+-|-. |.+++.|.|.|..-...-.-..+.-...++.+--......++
T Consensus 545 ~~Cky~~~--Ct-~a~Ce~~HPtaa---~~~~s~p~--k~fa~~~~ks~p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip 616 (681)
T KOG3702|consen 545 TRCKYGPA--CT-SAECEFAHPTAA---ENAKSLPN--KKFASKCLKSHPGCKFGKKCTASDCNYSHAGRRIPVQPTRIP 616 (681)
T ss_pred ccccCCCc--CC-chhhhhcCCcch---hhhhcccc--ccccccceecccccccccccccccCcccccCCCCCCccccCC
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCccCchhccCCCCCCCCCcccCCCCC
Q 015861 85 GVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTC 156 (399)
Q Consensus 85 g~~p~~s~~~qp~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~C~f~~~G~C~~G~~C~y~Hg~~c 156 (399)
..++.. ....+|.| .|.|.. -.|+|.|...|
T Consensus 617 ~~~~~~--------------------------------------ti~~~CrY--~pnCrn-m~C~F~HPk~c 647 (681)
T KOG3702|consen 617 PPFPGG--------------------------------------TIRGLCRY--RPNCRN-MQCKFYHPKTC 647 (681)
T ss_pred CCCCCC--------------------------------------Ccccccee--ccCcCC-ccccccCCccc
No 146
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=50.59 E-value=6.2 Score=28.98 Aligned_cols=48 Identities=27% Similarity=0.633 Sum_probs=21.8
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCC
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (399)
+.|+|-...|. -| +-..+|.|.-|++ +..|...... +..-.||+|.++
T Consensus 3 L~CPls~~~i~-~P-------~Rg~~C~H~~CFD-l~~fl~~~~~------~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR-IP-------VRGKNCKHLQCFD-LESFLESNQR------TPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S-SE-------EEETT--SS--EE-HHHHHHHHHH------S---B-TTT---
T ss_pred eeCCCCCCEEE-eC-------ccCCcCcccceEC-HHHHHHHhhc------cCCeECcCCcCc
Confidence 56889888754 34 5566899998865 3445443321 112479999863
No 147
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=43.89 E-value=10 Score=37.30 Aligned_cols=21 Identities=33% Similarity=0.925 Sum_probs=11.1
Q ss_pred cccccccccccCCCCCCCCCC
Q 015861 5 VLCKFFAHGACLKGEHCEFSH 25 (399)
Q Consensus 5 ~~Cryf~~G~C~~G~~C~fsH 25 (399)
.+|+.|..+.|.+|..|.|.|
T Consensus 153 a~C~~~e~~~C~rG~~CnFmH 173 (260)
T KOG2202|consen 153 AICGQFERTECSRGGACNFMH 173 (260)
T ss_pred hhhcccccccCCCCCcCcchh
Confidence 345555555555555555555
No 148
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.57 E-value=35 Score=33.16 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=38.0
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+-.|..|--.+.+.. -+-..|-|.|..+|+..|...-... ....-..||-|-+.+.
T Consensus 50 ~pNC~LC~t~La~gd-------t~RLvCyhlfHW~ClneraA~lPan---TAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGD-------TTRLVCYHLFHWKCLNERAANLPAN---TAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCc-------ceeehhhhhHHHHHhhHHHhhCCCc---CCCCcccCCCCCCccC
Confidence 456888877755543 2444799999999999998754310 1112357999988753
No 149
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=41.44 E-value=19 Score=36.69 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=45.8
Q ss_pred CCCCCcCCcccCCCCChhHHHHHHHHHHHHHHHHHHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHH
Q 015861 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232 (399)
Q Consensus 153 g~~c~~C~~~~lhp~~~~~~~~h~~~c~~~~~~~~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~ 232 (399)
+..|++|+....... .-.|+-|--.-.+...+........+.-|=-|.+....++ +|.-- .|.+.||++|=.=
T Consensus 290 P~eCpiC~ltLVss~-hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~-----~y~C~-~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 290 PIECPICSLTLVSSP-HLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSG-----RYRCE-SCKNVFCLDCDVF 362 (378)
T ss_pred CccCCccceeEecch-HHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCC-----cEEch-hccceeeccchHH
Confidence 467999998743222 2223333211111111111122223444999977655443 55544 5999999999554
Q ss_pred HHhhCCCCCCccCcccccCCCCC
Q 015861 233 WRSSSPTSGMDVNTALRACPICR 255 (399)
Q Consensus 233 W~~~~~~~~~~~~~~~~~CP~CR 255 (399)
--.+- -.||-|-
T Consensus 363 iHesL-----------h~CpgCe 374 (378)
T KOG2807|consen 363 IHESL-----------HNCPGCE 374 (378)
T ss_pred HHhhh-----------hcCCCcC
Confidence 44332 2699986
No 150
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=40.12 E-value=7.1 Score=44.04 Aligned_cols=35 Identities=20% Similarity=0.585 Sum_probs=25.9
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHH
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (399)
....|-.|.-.++.- --+=+.|+|.||+.|++.|.
T Consensus 228 ~~~mC~~C~~tlfn~-------hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLFNI-------HWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhcccccce-------eEEccccCCeeeecchhhcc
Confidence 345688888775531 24556799999999999993
No 151
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=39.22 E-value=20 Score=36.39 Aligned_cols=42 Identities=21% Similarity=0.529 Sum_probs=26.4
Q ss_pred CcCccccc--ccccccccCCcccccceeecCCCCCcccHHHHHHHH
Q 015861 191 RSQEIECS--VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (399)
Q Consensus 191 ~s~d~~C~--ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (399)
....+.|+ -|---++-. |..|+.---.+|+-+||..|...+.
T Consensus 312 q~gGVlCP~pgCG~gll~E--PD~rkvtC~~gCgf~FCR~C~e~yh 355 (446)
T KOG0006|consen 312 QMGGVLCPRPGCGAGLLPE--PDQRKVTCEGGCGFAFCRECKEAYH 355 (446)
T ss_pred ecCCEecCCCCCCcccccC--CCCCcccCCCCchhHhHHHHHhhhc
Confidence 33456664 354444433 4566655566699999999998554
No 152
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=38.59 E-value=13 Score=27.45 Aligned_cols=32 Identities=41% Similarity=0.818 Sum_probs=22.0
Q ss_pred eecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 216 GLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 216 gil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
|++.-=+|-.|+.|+..-.+.+. .||+|..+.
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~-----------~C~iC~~~L 45 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSD-----------RCPICGKPL 45 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSS-----------EETTTTEE-
T ss_pred CeeeecchhHHHHHHHHHhcccc-----------CCCcccCcC
Confidence 56653379999999998887654 799998764
No 153
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=15 Score=40.48 Aligned_cols=36 Identities=22% Similarity=0.617 Sum_probs=27.9
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHh
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (399)
..|.||+..++. ++.--+...|+|+-|..|..+--.
T Consensus 12 l~c~ic~n~f~~-----~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVV-----QRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHH-----HhcCcccccccchHHHHHHHhHhh
Confidence 569999877654 345567778999999999988654
No 154
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=36.92 E-value=6.9 Score=28.97 Aligned_cols=39 Identities=18% Similarity=0.497 Sum_probs=24.2
Q ss_pred cccc--ccccccccCCcccccceeecCCCCCcccHHHHHHHH
Q 015861 195 IECS--VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (399)
Q Consensus 195 ~~C~--ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (399)
.-|+ =|--.|...... ......-+.|+|.||+.|-..|-
T Consensus 19 ~~CP~~~C~~~~~~~~~~-~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEE-GCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred cCCCCCCCcceEEecCCC-CCCeeECCCCCCeECCCCCCcCC
Confidence 3477 675554432111 22334555799999999998885
No 155
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.20 E-value=12 Score=39.00 Aligned_cols=41 Identities=29% Similarity=0.768 Sum_probs=0.0
Q ss_pred ceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 214 KFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 214 ~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
-|..| +|+|++=. ..|-..+.. ....+.||+||+...| +|-
T Consensus 303 P~VYl-~CGHVhG~---h~Wg~~~~~-----~~~~r~CPlCr~~g~~-V~L 343 (416)
T PF04710_consen 303 PWVYL-NCGHVHGY---HNWGQDSDR-----DPRSRTCPLCRQVGPY-VPL 343 (416)
T ss_dssp ---------------------------------------------------
T ss_pred ceeec-cccceeee---ccccccccc-----ccccccCCCccccCCc-eeE
Confidence 34444 79998754 467654321 2236899999999987 443
No 156
>PLN02189 cellulose synthase
Probab=34.55 E-value=40 Score=39.32 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=46.2
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccC
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~ 270 (399)
.....|-||-|.|--. .....|..-..|+-.-|..|..-=|+.. ..+||+|++.+...-.|. ||..
T Consensus 32 ~~~~~C~iCgd~vg~~--~~g~~fvaC~~C~fpvCr~Cyeyer~eg----------~q~CpqCkt~Y~r~kgs~-~v~g 97 (1040)
T PLN02189 32 LDGQVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYERREG----------TQNCPQCKTRYKRLKGSP-RVEG 97 (1040)
T ss_pred ccCccccccccccCcC--CCCCEEEeeccCCCccccchhhhhhhcC----------CccCcccCCchhhccCCC-CcCC
Confidence 3456899999997654 3466887777899999999994333222 248999999988554343 3443
No 157
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=33.44 E-value=25 Score=22.50 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.5
Q ss_pred ccccccccc
Q 015861 197 CSVCLDRVL 205 (399)
Q Consensus 197 C~ICle~v~ 205 (399)
|+-|-..|-
T Consensus 3 CP~C~~~V~ 11 (26)
T PF10571_consen 3 CPECGAEVP 11 (26)
T ss_pred CCCCcCCch
Confidence 555555443
No 158
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=32.92 E-value=41 Score=39.39 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=46.1
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccC
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~ 270 (399)
.....|-||-|.|--.. ...-|.--..|+-.-|..|-.==|+.. ..+||+|++.+...-.|. +|..
T Consensus 15 ~~~qiCqICGD~vg~~~--~Ge~FVAC~eC~FPVCrpCYEYEr~eG----------~q~CPqCktrYkr~kgsp-rv~g 80 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTV--DGEPFVACDVCAFPVCRPCYEYERKDG----------NQSCPQCKTKYKRHKGSP-AILG 80 (1079)
T ss_pred cCCceeeecccccCcCC--CCCEEEEeccCCCccccchhhhhhhcC----------CccCCccCCchhhhcCCC-CcCc
Confidence 34558999999987653 456788878899999999983322221 248999999988554443 3554
No 159
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=31.81 E-value=21 Score=35.07 Aligned_cols=26 Identities=35% Similarity=0.763 Sum_probs=23.2
Q ss_pred CCCccCCCCCCCCCCCCcCCCCCCCC
Q 015861 33 NICTYYQKGFCSYGSRCRYEHVKPSR 58 (399)
Q Consensus 33 ~vCr~f~~G~C~~G~~C~y~H~~~~~ 58 (399)
.+|..|..+.|.+|..|-|.|.+...
T Consensus 153 a~C~~~e~~~C~rG~~CnFmH~k~~s 178 (260)
T KOG2202|consen 153 AICGQFERTECSRGGACNFMHVKRLS 178 (260)
T ss_pred hhhcccccccCCCCCcCcchhhhhhh
Confidence 37999999999999999999998653
No 160
>PLN02400 cellulose synthase
Probab=28.45 E-value=42 Score=39.33 Aligned_cols=68 Identities=21% Similarity=0.380 Sum_probs=47.1
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCccccc
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~ 269 (399)
+......|-||-|.|--.. ....|..-..|+-.-|..|- +...... ..+||+|++.+...-.| -+|.
T Consensus 32 ~~~~gqiCqICGD~VG~t~--dGe~FVAC~eCaFPVCRpCY-EYERkeG---------nq~CPQCkTrYkR~Kgs-prV~ 98 (1085)
T PLN02400 32 KNLNGQICQICGDDVGVTE--TGDVFVACNECAFPVCRPCY-EYERKDG---------TQCCPQCKTRYRRHKGS-PRVE 98 (1085)
T ss_pred cccCCceeeecccccCcCC--CCCEEEEEccCCCccccchh-heecccC---------CccCcccCCccccccCC-CCCC
Confidence 3344568999999987653 45688888889999999998 3332211 24899999998865433 3454
Q ss_pred C
Q 015861 270 T 270 (399)
Q Consensus 270 ~ 270 (399)
.
T Consensus 99 G 99 (1085)
T PLN02400 99 G 99 (1085)
T ss_pred c
Confidence 4
No 161
>PLN02436 cellulose synthase A
Probab=28.31 E-value=59 Score=38.16 Aligned_cols=63 Identities=24% Similarity=0.479 Sum_probs=44.8
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
+......|-||-|.|--. .....|.-=..|+-.-|..|..-=|+.. ..+||+|++.+...-.|
T Consensus 32 ~~~~~~iCqICGD~Vg~t--~dGe~FVACn~C~fpvCr~Cyeyer~eg----------~~~Cpqckt~Y~r~kgs 94 (1094)
T PLN02436 32 QELSGQTCQICGDEIELT--VDGEPFVACNECAFPVCRPCYEYERREG----------NQACPQCKTRYKRIKGS 94 (1094)
T ss_pred cccCCccccccccccCcC--CCCCEEEeeccCCCccccchhhhhhhcC----------CccCcccCCchhhccCC
Confidence 334556899999998654 3466787777799999999994333222 24899999998854433
No 162
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.66 E-value=27 Score=33.25 Aligned_cols=39 Identities=44% Similarity=0.878 Sum_probs=26.5
Q ss_pred ccccccccccCCcccccceeecCCCCC-cccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDH-PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H-~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
|=+|-+. +.. .+|..|+| .+|-.|=.. .+.||+|+.+..
T Consensus 161 Cr~C~~~--------~~~-VlllPCrHl~lC~~C~~~---------------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER--------EAT-VLLLPCRHLCLCGICDES---------------LRICPICRSPKT 200 (207)
T ss_pred ceecCcC--------Cce-EEeecccceEeccccccc---------------CccCCCCcChhh
Confidence 8888875 223 45555998 477777433 247999998754
No 163
>PLN02195 cellulose synthase A
Probab=27.45 E-value=71 Score=37.13 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=42.1
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
|....|-||-|.|--.. ....|.--..|+-.-|..|..==|+.. ...||+|++.+.
T Consensus 4 ~~~~~c~~cgd~~~~~~--~g~~fvaC~eC~~pvCrpCyeyer~eg----------~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDS--NGEAFVACHECSYPLCKACLEYEIKEG----------RKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCC--CCCeEEEeccCCCccccchhhhhhhcC----------CccCCccCCccc
Confidence 44568999999876553 456788888899999999994333322 248999999987
No 164
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=26.31 E-value=21 Score=38.72 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=46.0
Q ss_pred HHHhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 187 ~a~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
+..+......|++|+..-..+ + .=|++.+|+|-+|..|+..|....+ .|+.|++.+.+++-.
T Consensus 253 ~~deq~~~~~~~~~~~~~~~~----e-qk~l~~~~~~~~g~tsl~~e~~~~~-----------v~~~~~tk~~~~~~e 314 (553)
T KOG4430|consen 253 ELDEQENKNACGLCLSEADAK----E-QKGLEGNNQRQTGATSLMEEEAVES-----------VCPLRVTKVRTISKE 314 (553)
T ss_pred hhhhhhcccchhhchhhHhHH----H-hhhhhhcccchhhhhhhhhhhhhhh-----------hhhcccccccccccc
Confidence 333345567899999863322 1 2289999999999999999997654 699999998875543
No 165
>PF14353 CpXC: CpXC protein
Probab=24.75 E-value=48 Score=28.53 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=21.2
Q ss_pred cCCCCCCCcceeecCccccc-CchhHHHHHH
Q 015861 250 ACPICRKLSYFVIPSVIWYY-TPEEKQEIID 279 (399)
Q Consensus 250 ~CP~CR~~s~~viPs~~wv~-~~~eK~~li~ 279 (399)
+||.|...+.+-+...+-+. +.+-|++|++
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~ 33 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILD 33 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc
Confidence 79999999998776654332 3455777764
No 166
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.74 E-value=41 Score=25.09 Aligned_cols=13 Identities=38% Similarity=1.099 Sum_probs=7.5
Q ss_pred cCCCCCcccHHHH
Q 015861 218 LSECDHPFCISCI 230 (399)
Q Consensus 218 l~~C~H~FC~~CI 230 (399)
=+.|.+.||++|=
T Consensus 24 C~~C~~~FC~dCD 36 (51)
T PF07975_consen 24 CPKCKNHFCIDCD 36 (51)
T ss_dssp -TTTT--B-HHHH
T ss_pred CCCCCCccccCcC
Confidence 3579999999993
No 167
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=23.48 E-value=47 Score=26.17 Aligned_cols=14 Identities=29% Similarity=1.042 Sum_probs=10.1
Q ss_pred cccHHHHHHHHhhC
Q 015861 224 PFCISCIRNWRSSS 237 (399)
Q Consensus 224 ~FC~~CI~~W~~~~ 237 (399)
-||..|+-+|-...
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999998764
No 168
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.84 E-value=28 Score=34.18 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=38.9
Q ss_pred cCcccccccccccccCCcccccceeecCC-------CCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSE-------CDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~-------C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
..+..|.||....... .....-.++.. |+|+.|..||..-..... ..||.||...
T Consensus 205 ~~~~~c~ic~~~~~~n--~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~----------~~cp~~~~~~ 266 (296)
T KOG4185|consen 205 IIEKLCEICERIYSEN--DEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG----------IKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHHHhhcc--ccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh----------hcCCccccee
Confidence 3457899999874422 12344456665 999999999998776532 4899999753
No 169
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=22.19 E-value=80 Score=19.76 Aligned_cols=22 Identities=45% Similarity=1.143 Sum_probs=16.4
Q ss_pred CCCCcCCcccCCCCChhHHHHHHHHH
Q 015861 154 DTCPTCGKQCLHPFRPEEREEHMKSC 179 (399)
Q Consensus 154 ~~c~~C~~~~lhp~~~~~~~~h~~~c 179 (399)
..|+.||+. +.++.-..|.+.|
T Consensus 3 ~~C~~CgR~----F~~~~l~~H~~~C 24 (25)
T PF13913_consen 3 VPCPICGRK----FNPDRLEKHEKIC 24 (25)
T ss_pred CcCCCCCCE----ECHHHHHHHHHhc
Confidence 368899986 4567777888776
No 170
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.06 E-value=1.5e+02 Score=34.04 Aligned_cols=41 Identities=27% Similarity=0.656 Sum_probs=29.3
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCC
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (399)
..|.+|--. ++-|. |-=.|+|.|...|.. .+. ..||.|+..
T Consensus 841 skCs~C~~~-LdlP~-------VhF~CgHsyHqhC~e----~~~----------~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGT-LDLPF-------VHFLCGHSYHQHCLE----DKE----------DKCPKCLPE 881 (933)
T ss_pred eeecccCCc-cccce-------eeeecccHHHHHhhc----cCc----------ccCCccchh
Confidence 478888765 45552 333599999999998 222 379999983
No 171
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.35 E-value=92 Score=32.82 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=28.1
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhC
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~ 237 (399)
...|+.|.-.|.... ....--..-.+|.|.||.-|+..|....
T Consensus 226 tk~CP~c~~~iek~~-gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDG-GCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccC-CccccccccCCcCCeeceeeeccccccc
Confidence 344999999865432 1111111222499999999999999764
No 172
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.15 E-value=65 Score=34.23 Aligned_cols=39 Identities=21% Similarity=0.540 Sum_probs=30.5
Q ss_pred CCccCchhccCCCCCCCCCcccCCCCCCcCCcccCCCCChh
Q 015861 130 DRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPE 170 (399)
Q Consensus 130 ~~~~C~f~~~G~C~~G~~C~y~Hg~~c~~C~~~~lhp~~~~ 170 (399)
+++.|+|..+ |.||..|.|.|+..+.-..+.++-++.+.
T Consensus 170 ~~q~Cpygkk--ctyg~kck~~h~~~~~~~qr~v~~e~~a~ 208 (443)
T KOG3777|consen 170 NKQPCPYGKK--CTYGGKCKFYHPEIARGPQRSVLDEFTAS 208 (443)
T ss_pred cccCCCcccc--cCCCCceeecccccccccccccccccccc
Confidence 4677998655 89999999999999987777666555443
No 173
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.14 E-value=49 Score=28.08 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=23.2
Q ss_pred CCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 222 DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 222 ~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
.=.||..||..+-.....+.+ ....-.||.||..=
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~--~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVL--EDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHh--cCCceECCCCCCee
Confidence 778999999998765432111 12235799999843
No 174
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=20.79 E-value=14 Score=27.28 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=14.7
Q ss_pred ecCCCCCcccHHHHHHHH
Q 015861 217 LLSECDHPFCISCIRNWR 234 (399)
Q Consensus 217 il~~C~H~FC~~CI~~W~ 234 (399)
+=+.|++.||..|-..|-
T Consensus 42 ~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 42 TCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp CTTSCCSEECSSSTSESC
T ss_pred ECCCCCCcCccccCcccC
Confidence 444599999999998884
Done!