Query 015861
Match_columns 399
No_of_seqs 433 out of 1909
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.5 1.4E-14 4.7E-19 115.0 3.5 56 2-58 8-64 (77)
2 2rhk_C Cleavage and polyadenyl 99.5 1.1E-14 3.9E-19 114.2 1.6 55 2-57 14-69 (72)
3 2cqe_A KIAA1064 protein; CCCH 99.2 3.2E-12 1.1E-16 105.9 4.1 50 3-57 12-62 (98)
4 1m9o_A Tristetraproline; Cys3H 99.2 6.2E-12 2.1E-16 98.9 2.5 54 3-56 11-75 (77)
5 3d2q_A Muscleblind-like protei 99.2 3.6E-12 1.2E-16 99.2 0.6 54 3-57 5-66 (70)
6 3ztg_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 96.1 6.4 73 191-284 10-82 (92)
7 2e5s_A Otthump00000018578; ZF- 99.1 3.3E-12 1.1E-16 105.9 -2.0 55 3-58 19-81 (98)
8 2kiz_A E3 ubiquitin-protein li 99.1 6.5E-11 2.2E-15 90.3 5.2 57 191-264 11-67 (69)
9 1iym_A EL5; ring-H2 finger, ub 99.1 4.5E-11 1.5E-15 87.1 4.0 52 192-259 3-54 (55)
10 2csy_A Zinc finger protein 183 99.1 8.8E-11 3E-15 92.5 4.6 49 191-259 12-60 (81)
11 1t1h_A Gspef-atpub14, armadill 99.1 1.3E-10 4.6E-15 90.6 5.0 68 191-284 5-74 (78)
12 3ng2_A RNF4, snurf, ring finge 99.0 8.1E-11 2.8E-15 89.8 3.5 58 189-259 5-62 (71)
13 2y43_A E3 ubiquitin-protein li 99.0 1.4E-10 4.9E-15 94.7 5.1 68 193-286 21-90 (99)
14 2ea6_A Ring finger protein 4; 99.0 8.7E-11 3E-15 88.9 3.5 56 191-259 12-67 (69)
15 2djb_A Polycomb group ring fin 99.0 1.4E-10 4.7E-15 89.5 4.6 50 192-260 13-62 (72)
16 2yur_A Retinoblastoma-binding 99.0 1.3E-10 4.4E-15 90.3 4.2 51 191-258 12-62 (74)
17 2xeu_A Ring finger protein 4; 99.0 8.9E-11 3E-15 87.5 2.9 54 193-259 2-55 (64)
18 2ep4_A Ring finger protein 24; 99.0 1.7E-10 5.7E-15 89.1 4.4 54 191-261 12-65 (74)
19 4ayc_A E3 ubiquitin-protein li 99.0 1.5E-10 5.1E-15 100.5 4.5 50 193-262 52-101 (138)
20 2ecl_A Ring-box protein 2; RNF 99.0 1.6E-10 5.5E-15 91.7 4.0 57 193-260 14-76 (81)
21 2ecm_A Ring finger and CHY zin 99.0 2.2E-10 7.4E-15 83.2 4.3 51 192-258 3-53 (55)
22 1chc_A Equine herpes virus-1 r 99.0 2E-10 6.7E-15 87.2 4.2 54 192-264 3-56 (68)
23 2ckl_A Polycomb group ring fin 99.0 2.7E-10 9.2E-15 94.6 4.8 51 192-261 13-63 (108)
24 3lrq_A E3 ubiquitin-protein li 99.0 3.6E-10 1.2E-14 92.9 5.5 50 192-259 20-69 (100)
25 1g25_A CDK-activating kinase a 99.0 2.6E-10 8.9E-15 86.1 4.1 53 193-259 2-54 (65)
26 2d8t_A Dactylidin, ring finger 99.0 2.2E-10 7.5E-15 88.1 2.8 49 191-259 12-60 (71)
27 3d2n_A Muscleblind-like protei 99.0 1.3E-10 4.5E-15 93.4 1.7 54 3-57 8-67 (83)
28 1x4j_A Ring finger protein 38; 99.0 2.9E-10 9.9E-15 88.2 3.4 51 192-259 21-71 (75)
29 2ecy_A TNF receptor-associated 99.0 4.7E-10 1.6E-14 84.9 4.4 50 191-259 12-61 (66)
30 1v87_A Deltex protein 2; ring- 98.9 4.4E-10 1.5E-14 93.8 4.6 67 189-261 20-95 (114)
31 3fl2_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 95.1 4.5 70 192-284 50-119 (124)
32 2ect_A Ring finger protein 126 98.9 4.8E-10 1.6E-14 87.4 3.7 53 191-260 12-64 (78)
33 2l0b_A E3 ubiquitin-protein li 98.9 5.1E-10 1.8E-14 90.5 4.0 51 192-259 38-88 (91)
34 1jm7_A BRCA1, breast cancer ty 98.9 8.2E-10 2.8E-14 91.5 5.3 50 193-259 20-69 (112)
35 2ysl_A Tripartite motif-contai 98.9 7.3E-10 2.5E-14 85.0 4.4 52 191-259 17-68 (73)
36 2cqe_A KIAA1064 protein; CCCH 98.9 1.6E-09 5.6E-14 89.6 5.9 33 22-54 2-35 (98)
37 2ct2_A Tripartite motif protei 98.9 1.5E-09 5.1E-14 86.0 5.3 56 191-259 12-67 (88)
38 2kr4_A Ubiquitin conjugation f 98.8 3E-09 1E-13 85.2 5.8 66 192-284 12-79 (85)
39 1z6u_A NP95-like ring finger p 98.8 1.8E-09 6.3E-14 95.4 4.7 71 193-286 77-147 (150)
40 2egp_A Tripartite motif-contai 98.8 1E-09 3.4E-14 85.4 2.5 56 191-259 9-64 (79)
41 2ysj_A Tripartite motif-contai 98.8 2.3E-09 8E-14 80.2 4.4 47 191-254 17-63 (63)
42 3dpl_R Ring-box protein 1; ubi 98.8 2.1E-09 7.3E-14 90.0 4.5 57 193-260 36-101 (106)
43 2ecw_A Tripartite motif-contai 98.8 2.3E-09 8E-14 83.9 4.4 54 192-259 17-70 (85)
44 1e4u_A Transcriptional repress 98.8 2.8E-09 9.7E-14 84.4 4.6 55 191-260 8-62 (78)
45 2ckl_B Ubiquitin ligase protei 98.8 3E-09 1E-13 94.6 4.7 69 193-283 53-121 (165)
46 2ecj_A Tripartite motif-contai 98.8 3.7E-09 1.3E-13 77.3 4.3 47 191-254 12-58 (58)
47 3l11_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 91.8 1.5 50 192-260 13-62 (115)
48 2yu4_A E3 SUMO-protein ligase 98.8 4.8E-09 1.6E-13 85.5 5.3 75 192-286 5-84 (94)
49 2ecv_A Tripartite motif-contai 98.8 3.3E-09 1.1E-13 83.0 4.2 55 191-259 16-70 (85)
50 4ap4_A E3 ubiquitin ligase RNF 98.8 2E-09 6.9E-14 90.9 2.9 55 192-259 5-59 (133)
51 2rpp_A Muscleblind-like protei 98.8 7.5E-10 2.5E-14 90.1 0.1 53 4-57 17-75 (89)
52 3hct_A TNF receptor-associated 98.8 2.5E-09 8.4E-14 90.3 3.3 50 191-259 15-64 (118)
53 2ecn_A Ring finger protein 141 98.8 9.3E-10 3.2E-14 84.0 0.3 49 191-260 12-60 (70)
54 1m9o_A Tristetraproline; Cys3H 98.8 2.8E-09 9.6E-14 83.6 2.9 28 30-57 10-38 (77)
55 1wgm_A Ubiquitin conjugation f 98.7 8.4E-09 2.9E-13 85.0 5.4 67 192-285 20-89 (98)
56 1jm7_B BARD1, BRCA1-associated 98.7 5.9E-09 2E-13 87.8 4.4 67 192-284 20-86 (117)
57 2kre_A Ubiquitin conjugation f 98.7 8.6E-09 2.9E-13 85.2 5.1 68 192-286 27-96 (100)
58 2rhk_C Cleavage and polyadenyl 98.7 4.7E-09 1.6E-13 82.1 3.3 26 30-55 14-39 (72)
59 1rmd_A RAG1; V(D)J recombinati 98.7 7E-09 2.4E-13 86.9 4.5 47 194-259 23-69 (116)
60 2d9n_A Cleavage and polyadenyl 98.7 7.6E-09 2.6E-13 81.7 3.8 27 30-56 8-34 (77)
61 2vje_A E3 ubiquitin-protein li 98.7 7.1E-09 2.4E-13 78.7 2.7 56 190-264 4-61 (64)
62 1bor_A Transcription factor PM 98.7 2.9E-09 9.9E-14 78.5 0.6 46 191-259 3-48 (56)
63 3knv_A TNF receptor-associated 98.6 9.5E-09 3.3E-13 89.9 2.7 50 190-258 27-76 (141)
64 4a0k_B E3 ubiquitin-protein li 98.6 4.4E-09 1.5E-13 89.7 0.2 57 193-260 47-112 (117)
65 4ic3_A E3 ubiquitin-protein li 98.6 1.1E-08 3.8E-13 79.6 2.0 47 193-263 23-70 (74)
66 2c2l_A CHIP, carboxy terminus 98.6 3.3E-08 1.1E-12 93.5 5.3 67 192-284 206-274 (281)
67 4ap4_A E3 ubiquitin ligase RNF 98.6 1.8E-08 6.3E-13 85.0 2.7 56 191-259 69-124 (133)
68 2y1n_A E3 ubiquitin-protein li 98.6 3.9E-08 1.3E-12 99.3 5.4 55 190-263 328-382 (389)
69 2vje_B MDM4 protein; proto-onc 98.5 3.3E-08 1.1E-12 74.7 2.7 54 192-263 5-59 (63)
70 3d2q_A Muscleblind-like protei 98.5 4.1E-08 1.4E-12 76.2 2.9 25 32-56 6-31 (70)
71 1wim_A KIAA0161 protein; ring 98.5 4.9E-08 1.7E-12 79.0 2.3 81 192-285 3-85 (94)
72 3hcs_A TNF receptor-associated 98.4 8.7E-08 3E-12 85.4 3.7 50 191-259 15-64 (170)
73 2d8s_A Cellular modulator of i 98.4 1E-07 3.4E-12 75.8 3.6 54 191-260 12-70 (80)
74 2ecg_A Baculoviral IAP repeat- 98.4 7E-08 2.4E-12 75.1 2.3 47 193-263 24-71 (75)
75 2f42_A STIP1 homology and U-bo 98.4 2.2E-07 7.4E-12 84.7 5.7 67 192-284 104-172 (179)
76 2e5s_A Otthump00000018578; ZF- 98.4 4.6E-08 1.6E-12 80.9 1.0 26 31-56 19-45 (98)
77 2ct0_A Non-SMC element 1 homol 98.3 4.5E-07 1.5E-11 71.2 4.8 54 194-264 15-68 (74)
78 3htk_C E3 SUMO-protein ligase 98.3 4.5E-07 1.6E-11 87.0 4.8 71 191-285 178-252 (267)
79 2yho_A E3 ubiquitin-protein li 98.3 1.6E-07 5.6E-12 74.1 1.4 47 193-263 17-64 (79)
80 3d2n_A Muscleblind-like protei 98.3 3.9E-07 1.3E-11 73.1 3.4 26 31-56 8-34 (83)
81 2rpp_A Muscleblind-like protei 98.2 6.6E-07 2.3E-11 72.7 3.3 38 18-56 4-42 (89)
82 2ea5_A Cell growth regulator w 98.2 1.2E-06 4.2E-11 67.2 3.8 49 191-263 12-61 (68)
83 3u9g_A Zinc finger CCCH-type a 98.0 5.5E-06 1.9E-10 77.5 5.7 22 133-155 177-198 (229)
84 3t6p_A Baculoviral IAP repeat- 97.9 2E-06 6.9E-11 85.7 1.6 48 192-263 293-341 (345)
85 3vk6_A E3 ubiquitin-protein li 97.9 5.9E-06 2E-10 68.2 3.6 47 197-261 4-50 (101)
86 3k1l_B Fancl; UBC, ring, RWD, 97.9 4.1E-06 1.4E-10 83.2 2.4 66 193-259 307-372 (381)
87 2bay_A PRE-mRNA splicing facto 97.7 1.9E-05 6.4E-10 59.4 2.9 52 194-264 3-56 (61)
88 1vyx_A ORF K3, K3RING; zinc-bi 97.7 3E-05 1E-09 58.2 4.0 53 191-260 3-59 (60)
89 3u9g_A Zinc finger CCCH-type a 96.5 0.0011 3.6E-08 62.2 2.6 44 4-57 151-199 (229)
90 2d9m_A Zinc finger CCCH-type d 96.5 0.0024 8.2E-08 49.2 4.0 25 130-154 19-43 (69)
91 2d9m_A Zinc finger CCCH-type d 96.4 0.0011 3.9E-08 51.0 1.6 26 32-57 20-45 (69)
92 3nw0_A Non-structural maintena 95.9 0.013 4.5E-07 55.2 7.1 55 193-265 179-234 (238)
93 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.01 3.5E-07 47.8 1.5 34 193-234 2-38 (101)
94 2fc6_A Nuclear, target of EGR1 94.3 0.053 1.8E-06 39.0 4.3 28 129-156 18-46 (50)
95 2fc6_A Nuclear, target of EGR1 94.0 0.015 5.2E-07 41.8 1.0 25 4-28 20-45 (50)
96 3u1l_A PRE-mRNA-splicing facto 92.7 0.029 9.9E-07 53.0 1.0 24 131-154 70-93 (240)
97 3u1l_A PRE-mRNA-splicing facto 92.2 0.029 9.8E-07 53.0 0.3 27 32-58 70-96 (240)
98 2lhn_A Nuclear polyadenylated 87.4 0.11 3.7E-06 41.1 0.0 42 4-54 9-50 (80)
99 2lhn_A Nuclear polyadenylated 77.0 0.6 2.1E-05 36.8 0.0 41 5-55 32-72 (80)
100 1weo_A Cellulose synthase, cat 73.0 5.7 0.0002 31.9 5.2 58 191-260 13-70 (93)
101 2ko5_A Ring finger protein Z; 69.8 1.4 5E-05 35.7 1.1 44 195-259 29-72 (99)
102 3ql9_A Transcriptional regulat 50.3 16 0.00055 31.1 4.3 50 192-257 55-111 (129)
103 3v33_A Ribonuclease ZC3H12A; r 45.6 4.4 0.00015 37.7 0.0 24 130-155 191-214 (223)
104 2jmo_A Parkin; IBR, E3 ligase, 45.2 2.1 7.3E-05 33.2 -1.9 16 220-235 55-70 (80)
105 2lri_C Autoimmune regulator; Z 41.7 17 0.0006 27.0 2.8 51 192-258 10-60 (66)
106 2ysm_A Myeloid/lymphoid or mix 38.7 8.3 0.00028 31.3 0.6 38 191-234 4-41 (111)
107 1z60_A TFIIH basal transcripti 33.1 21 0.00071 26.3 2.0 43 195-254 16-58 (59)
108 3m62_A Ubiquitin conjugation f 31.7 95 0.0032 34.7 7.7 71 189-285 886-958 (968)
109 1zbd_B Rabphilin-3A; G protein 31.5 35 0.0012 29.0 3.5 67 192-270 53-120 (134)
110 2ct7_A Ring finger protein 31; 27.4 5.3 0.00018 31.2 -2.3 19 219-237 47-65 (86)
111 2lbm_A Transcriptional regulat 23.3 85 0.0029 26.9 4.4 33 191-232 60-92 (142)
112 2cs3_A Protein C14ORF4, MY039 22.1 68 0.0023 25.3 3.2 40 192-237 13-53 (93)
113 3a1b_A DNA (cytosine-5)-methyl 21.2 37 0.0013 29.8 1.8 68 191-268 76-147 (159)
114 2zet_C Melanophilin; complex, 21.2 35 0.0012 29.7 1.5 63 193-269 67-129 (153)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=114.97 Aligned_cols=56 Identities=38% Similarity=0.903 Sum_probs=52.1
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCCCCCccCCC-CCCCCCCCCcCCCCCCCC
Q 015861 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSR 58 (399)
Q Consensus 2 tk~~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~~-G~C~~G~~C~y~H~~~~~ 58 (399)
+|+++|+||++|.|++|++|+|+|++...++++|+||++ |.|. |++|+|+|..+..
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPES 64 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTS
T ss_pred CcceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCccc
Confidence 478999999999999999999999998878889999998 9999 8999999998764
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.45 E-value=1.1e-14 Score=114.18 Aligned_cols=55 Identities=38% Similarity=0.921 Sum_probs=51.5
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCCCCCccCCC-CCCCCCCCCcCCCCCCC
Q 015861 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 2 tk~~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~~-G~C~~G~~C~y~H~~~~ 57 (399)
+++++|+||++|.|++|++|+|+|+++..++++|+||++ |.|.+ ++|+|.|..++
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 378899999999999999999999998888899999998 99999 99999999875
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.24 E-value=3.2e-12 Score=105.87 Aligned_cols=50 Identities=36% Similarity=0.877 Sum_probs=46.1
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCCCCCccCC-CCCCCCCCCCcCCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~-~G~C~~G~~C~y~H~~~~ 57 (399)
|+++|+||++|.|++|++|+|+|+ ..+|+||+ .|.|.+|++|+|+|....
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~-----~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS-----SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCccCcccccCcCCCCCCCCCCCC-----CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 789999999999999999999998 67899995 999999999999998543
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.18 E-value=6.2e-12 Score=98.87 Aligned_cols=54 Identities=33% Similarity=0.893 Sum_probs=25.0
Q ss_pred Ccccccccc-ccccCCCCCCCCCCCCCCC---------CCCCCccCC-CCCCCCCCCCcCCCCCC
Q 015861 3 KRVLCKFFA-HGACLKGEHCEFSHDWKDP---------PNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (399)
Q Consensus 3 k~~~Cryf~-~G~C~~G~~C~fsHd~~~~---------~~~vCr~f~-~G~C~~G~~C~y~H~~~ 56 (399)
|+.+|++|+ .|.|++|++|+|+|+.... ++.+|++|. .|.|.+|++|+|+|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 789999996 8999999999999998652 257898664 99999999999999764
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.16 E-value=3.6e-12 Score=99.20 Aligned_cols=54 Identities=33% Similarity=0.790 Sum_probs=46.8
Q ss_pred CccccccccccccCCCC-CCCCCCCCC-------CCCCCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGE-HCEFSHDWK-------DPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~-~C~fsHd~~-------~~~~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
|..+|++|++|.|++|+ .|+|+|+.. ..+.++|++|++|.|.+| .|+|.|..+.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~ 66 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAH 66 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCC-CcCeeCCHHH
Confidence 56799999999999999 599999764 345689999999999998 9999998653
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.15 E-value=4.6e-11 Score=96.12 Aligned_cols=73 Identities=21% Similarity=0.528 Sum_probs=50.7
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~ 270 (399)
..++..|+||++.+ .+| .+++.|+|+||..||.+|..... ...||+||..+.. +.. +..
T Consensus 10 ~~~~~~C~IC~~~~-~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~~--~~~--~~~ 68 (92)
T 3ztg_A 10 IPDELLCLICKDIM-TDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQNDVS--PDA--LIA 68 (92)
T ss_dssp CCTTTEETTTTEEC-SSC-------EECTTTCCEECHHHHHHHHHHCT---------TCCCTTTCCSSCC--TTS--CEE
T ss_pred CCcCCCCCCCChhh-cCc-------eECCCCCCHHHHHHHHHHHHhcC---------CCcCcCCCCcCCC--ccc--cCc
Confidence 34678999999974 455 46666999999999999987543 2489999998621 111 112
Q ss_pred chhHHHHHHHHHhh
Q 015861 271 PEEKQEIIDSYKSK 284 (399)
Q Consensus 271 ~~eK~~li~~yk~~ 284 (399)
...-+++|+.|+..
T Consensus 69 n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 69 NKFLRQAVNNFKNE 82 (92)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 23456788888764
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.3e-12 Score=105.88 Aligned_cols=55 Identities=33% Similarity=0.741 Sum_probs=48.3
Q ss_pred CccccccccccccCCCC-CCCCCCCCCC-------CCCCCCccCCCCCCCCCCCCcCCCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~-~C~fsHd~~~-------~~~~vCr~f~~G~C~~G~~C~y~H~~~~~ 58 (399)
|..+|++|++|.|++|+ .|+|+|+... .+.++|++|++|.|.+| .|+|.|..+..
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence 45799999999999999 8999999753 45689999999999998 99999987653
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=6.5e-11 Score=90.26 Aligned_cols=57 Identities=30% Similarity=0.648 Sum_probs=44.3
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
...+..|+||++.+.... ...++ .|+|.||..||.+|...+. +||+||..+...+|.
T Consensus 11 ~~~~~~C~IC~~~~~~~~-----~~~~~-~C~H~fc~~Ci~~~~~~~~-----------~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGE-----DVRRL-PCMHLFHQVCVDQWLITNK-----------KCPICRVDIEAQLPS 67 (69)
T ss_dssp TTCCCSBTTTTBCCCSSS-----CEEEC-TTSCEEEHHHHHHHHHHCS-----------BCTTTCSBSCSCCCC
T ss_pred CCCCCCCeeCCccccCCC-----cEEEe-CCCCHHHHHHHHHHHHcCC-----------CCcCcCccccCcCCC
Confidence 455678999999865321 23455 5999999999999998753 699999998877765
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.10 E-value=4.5e-11 Score=87.06 Aligned_cols=52 Identities=31% Similarity=0.788 Sum_probs=40.8
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.++.+|+||++.+.+. ....+++.|+|.||..||.+|...+ .+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~-----~~~~~~~~C~H~f~~~Ci~~w~~~~-----------~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-----EEARFLPRCGHGFHAECVDMWLGSH-----------STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTT-----SCCEECSSSCCEECTTHHHHTTTTC-----------CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCC-----CceEECCCCCCcccHHHHHHHHHcC-----------CcCcCCCCEeE
Confidence 4568899999986542 2235677799999999999998654 37999998753
No 10
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.8e-11 Score=92.49 Aligned_cols=49 Identities=24% Similarity=0.632 Sum_probs=39.3
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
...+..|+||++.+. .| ++..|+|+||..||.+|.... ..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~-~p--------~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQ-NP--------VVTKCRHYFCESCALEHFRAT-----------PRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCC-SE--------EECTTSCEEEHHHHHHHHHHC-----------SBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhc-Ce--------eEccCCCHhHHHHHHHHHHCC-----------CcCCCcCcccc
Confidence 345678999999854 33 345699999999999999753 38999999876
No 11
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=1.3e-10 Score=90.58 Aligned_cols=68 Identities=15% Similarity=0.411 Sum_probs=50.7
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCcccc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv 268 (399)
..++..|+||++. +.+| .++ .|+|+||..||.+|..... .+||+||..+.. ++|+.
T Consensus 5 ~~~~~~C~IC~~~-~~~P-------v~~-~CgH~fc~~Ci~~~~~~~~----------~~CP~C~~~~~~~~l~~n~--- 62 (78)
T 1t1h_A 5 FPEYFRCPISLEL-MKDP-------VIV-STGQTYERSSIQKWLDAGH----------KTCPKSQETLLHAGLTPNY--- 62 (78)
T ss_dssp CSSSSSCTTTSCC-CSSE-------EEE-TTTEEEEHHHHHHHHTTTC----------CBCTTTCCBCSSCCCEECT---
T ss_pred CcccCCCCCcccc-ccCC-------EEc-CCCCeecHHHHHHHHHHCc----------CCCCCCcCCCChhhCccCH---
Confidence 3567899999997 4455 455 5999999999999997422 489999998752 44442
Q ss_pred cCchhHHHHHHHHHhh
Q 015861 269 YTPEEKQEIIDSYKSK 284 (399)
Q Consensus 269 ~~~~eK~~li~~yk~~ 284 (399)
.-+++|+.|++.
T Consensus 63 ----~l~~~i~~~~~~ 74 (78)
T 1t1h_A 63 ----VLKSLIALWCES 74 (78)
T ss_dssp ----TTHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 345788988765
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.04 E-value=8.1e-11 Score=89.82 Aligned_cols=58 Identities=33% Similarity=0.720 Sum_probs=42.8
Q ss_pred HhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
...+++.+|+||++.+.+ |...++. .++..|+|+||..||.+|...+ .+||+||..+.
T Consensus 5 ~~~~~~~~C~IC~~~~~~-~~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 62 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSE-IVQNGRL-IVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 62 (71)
T ss_dssp -CCTTCCBCTTTCCBHHH-HHTTTCC-EEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCcccChhhhc-cccccCC-eEeCCCCChHhHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 455678899999998554 2111222 3556799999999999999765 38999999875
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=94.67 Aligned_cols=68 Identities=21% Similarity=0.515 Sum_probs=49.8
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCcccccC
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv~~ 270 (399)
++..|+||++.+. +| .++..|+|+||..||.+|...+ ..||+||..+.. +.|+
T Consensus 21 ~~~~C~IC~~~~~-~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~l~~n------ 75 (99)
T 2y43_A 21 DLLRCGICFEYFN-IA-------MIIPQCSHNYCSLCIRKFLSYK-----------TQCPTCCVTVTEPDLKNN------ 75 (99)
T ss_dssp HHTBCTTTCSBCS-SE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCGGGCEEC------
T ss_pred CCCCcccCChhhC-Cc-------CEECCCCCHhhHHHHHHHHHCC-----------CCCCCCCCcCChhhCCcC------
Confidence 4578999999854 44 4555799999999999999753 389999998763 3332
Q ss_pred chhHHHHHHHHHhhcc
Q 015861 271 PEEKQEIIDSYKSKLK 286 (399)
Q Consensus 271 ~~eK~~li~~yk~~~~ 286 (399)
..-+.+|+.|++.-.
T Consensus 76 -~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 76 -RILDELVKSLNFARN 90 (99)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 334577888776543
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=8.7e-11 Score=88.88 Aligned_cols=56 Identities=30% Similarity=0.726 Sum_probs=41.1
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++.+|+||++.+.+ +....+.+ ++..|+|+||..||.+|...+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSE-IVQNGRLI-VSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHH-HTTTTCCE-EECSSSCEEEHHHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred CCCCCCCcccCccccc-cccccCCe-EeCCCCChhcHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 3467889999998553 21122333 445699999999999999864 37999998764
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=89.45 Aligned_cols=50 Identities=32% Similarity=0.654 Sum_probs=40.6
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.++..|+||++.+.+ | .++..|+|+||..||.+|...+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLID-A-------TTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSS-C-------EECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHC-c-------CEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCc
Confidence 456899999998543 4 4566799999999999999764 379999998764
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=90.33 Aligned_cols=51 Identities=25% Similarity=0.623 Sum_probs=40.3
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
..++..|+||++.+. +| .+++.|+|+||..||.+|...+. ...||+||..+
T Consensus 12 ~~~~~~C~IC~~~~~-~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMT-DA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCT-TC-------EECSSSCCEECTTHHHHHHHHSS---------SSCCSSSCCSS
T ss_pred CCCCCCCcCCChHHh-CC-------eEcCCCCCHHHHHHHHHHHHhcC---------CCcCCCCCCcC
Confidence 345789999999854 45 45666999999999999998653 24899999963
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.02 E-value=8.9e-11 Score=87.54 Aligned_cols=54 Identities=30% Similarity=0.738 Sum_probs=40.3
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
++.+|+||++.+.+ +..+.+.. ++..|+|+||..||.+|...+ .+||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~-~~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSE-IVQNGRLI-VSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHH-HHHTTCCE-EEETTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCT
T ss_pred CCCCCCccChhhhC-ccccCCCE-EeCCCCCchhHHHHHHHHHcC-----------CCCCCCCccCC
Confidence 56889999998543 21122333 445699999999999999864 38999999865
No 18
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=89.13 Aligned_cols=54 Identities=24% Similarity=0.707 Sum_probs=41.8
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v 261 (399)
...+..|+||++.+... ....+|+ |+|.||..||.+|...+ .+||+||..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~-----~~~~~~~-C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPR-----DELGICP-CKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSS-----SCEEEET-TTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCC-----CcEEEcC-CCCEecHHHHHHHHHcC-----------CcCCCcCcccccc
Confidence 45578999999985432 2345565 99999999999999865 2799999987643
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.02 E-value=1.5e-10 Score=100.51 Aligned_cols=50 Identities=34% Similarity=0.835 Sum_probs=39.2
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceee
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~vi 262 (399)
++..|+||++.+. .| .++ .|+|+||..||.+|...+ .+||+||..+....
T Consensus 52 ~~~~C~iC~~~~~-~~-------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI-EA-------VTL-NCAHSFCSYCINEWMKRK-----------IECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS-SE-------EEE-TTSCEEEHHHHHHHTTTC-----------SBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC-Cc-------eEC-CCCCCccHHHHHHHHHcC-----------CcCCCCCCcCCCCC
Confidence 4568999999854 44 345 599999999999998754 37999999876433
No 20
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=91.66 Aligned_cols=57 Identities=23% Similarity=0.595 Sum_probs=41.6
Q ss_pred CcccccccccccccC------CcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 193 QEIECSVCLDRVLSK------PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 193 ~d~~C~ICle~v~~k------~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
++.+|+||++.+.+. +...+....+++.|+|.||..||.+|...+ .+||+||..+.+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----------NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----------CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----------CCCCCcCCCcch
Confidence 567899999986441 000122335666899999999999999765 389999998754
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.01 E-value=2.2e-10 Score=83.25 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=39.6
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
+.+.+|+||++.+.+. +....++ .|+|.||..||.+|...+ .+||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTS----RVVAHVL-PCGHLLHRTCYEEMLKEG-----------YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTT----TSCEEEC-TTSCEEETTHHHHHHHHT-----------CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCC----CcCeEec-CCCCcccHHHHHHHHHcC-----------CcCCCCCCcC
Confidence 4578899999986542 2233444 599999999999999875 3799999875
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.00 E-value=2e-10 Score=87.18 Aligned_cols=54 Identities=26% Similarity=0.710 Sum_probs=42.6
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
..+.+|+||++.+.+ + .++..|+|.||..||.+|...+ .+||+||..+..++..
T Consensus 3 ~~~~~C~IC~~~~~~-~-------~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLEDPSN-Y-------SMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSCCCS-C-------EEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEECC
T ss_pred CCCCCCeeCCccccC-C-------cEecCCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhhhc
Confidence 456789999998543 2 2444699999999999999764 3799999998876655
No 23
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.99 E-value=2.7e-10 Score=94.56 Aligned_cols=51 Identities=27% Similarity=0.666 Sum_probs=41.2
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v 261 (399)
.++..|+||++.+. +| .++..|+|+||..||.+|.... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~-~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI-DA-------TTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS-SE-------EEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHh-Cc-------CEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCcccccc
Confidence 46789999999854 44 4555799999999999999753 4899999987643
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.99 E-value=3.6e-10 Score=92.91 Aligned_cols=50 Identities=28% Similarity=0.800 Sum_probs=40.2
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.++..|+||++.+. .| .++..|+|+||..||.+|...+. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~-~p-------~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLR-DA-------RLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCS-SE-------EECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCccCCcccc-Cc-------cccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCC
Confidence 45688999999854 44 34267999999999999998753 38999999875
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.6e-10 Score=86.08 Aligned_cols=53 Identities=23% Similarity=0.577 Sum_probs=38.9
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
++..|+||++.++.+|. ..+ ++..|+|+||..||.+|..... ..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~---~~~-~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPS---LKL-MVNVCGHTLCESCVDLLFVRGA----------GNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSS---CCE-EECTTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCc---cCe-ecCCCCCHhHHHHHHHHHHcCC----------CcCCCCCCccc
Confidence 46789999994354442 222 3446999999999999975432 47999999875
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.2e-10 Score=88.10 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=39.2
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++.+|+||++.+. +| .++ .|+|+||..||.+|.... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~-~~-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCV-HP-------VSL-PCKHVFCYLCVKGASWLG-----------KRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCS-SE-------EEE-TTTEEEEHHHHHHCTTCS-----------SBCSSSCCBCC
T ss_pred CCCCCCCccCCcccC-CC-------EEc-cCCCHHHHHHHHHHHHCC-----------CcCcCcCchhC
Confidence 456789999999853 33 345 599999999999998653 48999999875
No 27
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.96 E-value=1.3e-10 Score=93.41 Aligned_cols=54 Identities=31% Similarity=0.653 Sum_probs=47.0
Q ss_pred CccccccccccccCCCC-CCCCCCCCCC-----CCCCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 3 k~~~Cryf~~G~C~~G~-~C~fsHd~~~-----~~~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
+..+|++|++|.|.+|+ .|+|+|+... ...++|.+|++|.|.++ .|+|.|..+.
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCC-CcceeCChHH
Confidence 45789999999999997 9999998753 34689999999999987 9999998764
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=2.9e-10 Score=88.21 Aligned_cols=51 Identities=35% Similarity=0.833 Sum_probs=40.1
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.++.+|+|||+.+... ....+|+ |+|.||..||.+|...+ .+||+||..+.
T Consensus 21 ~~~~~C~IC~~~~~~~-----~~~~~l~-C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESR-----QLLRVLP-CNHEFHAKCVDKWLKAN-----------RTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBT-----CEEEEET-TTEEEETTHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCC-----CeEEEEC-CCCHhHHHHHHHHHHcC-----------CcCcCcCCcCC
Confidence 4678899999986542 2345665 99999999999999765 37999998754
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.7e-10 Score=84.89 Aligned_cols=50 Identities=30% Similarity=0.613 Sum_probs=38.8
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++..|+||++.+. +| +...|+|+||..||.+|.... ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~-~p--------~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC-SP--------KQTECGHRFCESCMAALLSSS----------SPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEES-SC--------CCCSSSCCCCHHHHHHHHTTS----------SCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhc-Ce--------eECCCCCHHHHHHHHHHHHhC----------cCCCCCCCcCCC
Confidence 356789999999854 44 334799999999999999632 247999999864
No 30
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.95 E-value=4.4e-10 Score=93.78 Aligned_cols=67 Identities=19% Similarity=0.498 Sum_probs=44.8
Q ss_pred HhCcCcccccccccccccCCc---------ccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 189 LRRSQEIECSVCLDRVLSKPT---------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~---------~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+....+..|+|||+.+..... ......+.+..|+|.||..||.+|...... ....+||+||..+.
T Consensus 20 ~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~------~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK------DGSLQCPSCKTIYG 93 (114)
T ss_dssp CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC------SSCCBCTTTCCBSS
T ss_pred ccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC------CCCCcCCCCCCccC
Confidence 344566799999999643210 011233446679999999999999964321 12358999999876
Q ss_pred ee
Q 015861 260 FV 261 (399)
Q Consensus 260 ~v 261 (399)
..
T Consensus 94 ~~ 95 (114)
T 1v87_A 94 EK 95 (114)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.93 E-value=5.2e-10 Score=95.07 Aligned_cols=70 Identities=19% Similarity=0.404 Sum_probs=47.9
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccCc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~~ 271 (399)
.++..|+||++.+. +| .++ .|+|+||..||..|..... ..||+||..+.. +.. +...
T Consensus 50 ~~~~~C~IC~~~~~-~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~--~~~--~~~n 106 (124)
T 3fl2_A 50 EETFQCICCQELVF-RP-------ITT-VCQHNVCKDCLDRSFRAQV----------FSCPACRYDLGR--SYA--MQVN 106 (124)
T ss_dssp HHHTBCTTTSSBCS-SE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCT--TCC--CCCC
T ss_pred ccCCCCCcCChHHc-Cc-------EEe-eCCCcccHHHHHHHHhHCc----------CCCCCCCccCCC--CCC--CCCC
Confidence 34678999999854 44 344 6999999999999997432 489999998753 011 1223
Q ss_pred hhHHHHHHHHHhh
Q 015861 272 EEKQEIIDSYKSK 284 (399)
Q Consensus 272 ~eK~~li~~yk~~ 284 (399)
..-..+|+.|...
T Consensus 107 ~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 107 QPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccc
Confidence 3455677766543
No 32
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.92 E-value=4.8e-10 Score=87.39 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=40.2
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
...+.+|+||++.+... ....+| .|+|.||..||.+|...+ .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~-----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALG-----ESVRQL-PCNHLFHDSCIVPWLEQH-----------DSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTT-----SCEEEC-TTSCEEETTTTHHHHTTT-----------CSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCC-----CCEEEe-CCCCeecHHHHHHHHHcC-----------CcCcCcCCccCC
Confidence 34578999999985432 123445 499999999999999653 389999998753
No 33
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.92 E-value=5.1e-10 Score=90.46 Aligned_cols=51 Identities=29% Similarity=0.686 Sum_probs=39.8
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..+..|+|||+.+... ....+|+ |+|.||..||.+|...+ .+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~-----~~~~~l~-C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG-----DVATELP-CHHYFHKPCVSIWLQKS-----------GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTT-----CEEEEET-TTEEEEHHHHHHHHTTT-----------CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCC-----CcEEecC-CCChHHHHHHHHHHHcC-----------CcCcCcCccCC
Confidence 4567899999986543 2335666 99999999999999754 38999998753
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=8.2e-10 Score=91.49 Aligned_cols=50 Identities=28% Similarity=0.763 Sum_probs=38.8
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
++..|+||++.+ ..| .+ ..|+|+||..||.+|...+.. ...||+||..+.
T Consensus 20 ~~~~C~IC~~~~-~~p-------~~-~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELI-KEP-------VS-TKCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCC-SSC-------CB-CTTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCC
T ss_pred CCCCCcccChhh-cCe-------EE-CCCCCHHHHHHHHHHHHhCCC--------CCCCcCCCCcCC
Confidence 457899999975 444 23 469999999999999986421 258999999876
No 35
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7.3e-10 Score=85.02 Aligned_cols=52 Identities=33% Similarity=0.837 Sum_probs=39.8
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++..|+||++.+. +| .++ .|+|+||..||.+|..... ....||+||+.+.
T Consensus 17 ~~~~~~C~IC~~~~~-~~-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQ-KP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCS-SE-------EEC-TTCCEEEHHHHHHHCSSSC--------SCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccC-Ce-------EEc-CCCChhhHHHHHHHHHcCC--------CCCCCCCCCCcCC
Confidence 356789999999754 44 345 7999999999999997321 1358999999865
No 36
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.89 E-value=1.6e-09 Score=89.58 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=29.8
Q ss_pred CCCCCCCC-CCCCCCccCCCCCCCCCCCCcCCCC
Q 015861 22 EFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHV 54 (399)
Q Consensus 22 ~fsHd~~~-~~~~vCr~f~~G~C~~G~~C~y~H~ 54 (399)
.|+|+... .++.+|+||++|.|.+|++|+|+|.
T Consensus 2 ~~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 2 SSGSSGELPKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccccCCCCCCCccCcccccCcCCCCCCCCCCCC
Confidence 48999876 5789999999999999999999996
No 37
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=86.01 Aligned_cols=56 Identities=27% Similarity=0.683 Sum_probs=41.7
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++.+|+||++.+.+. ++...++ .|+|+||..||.+|...+. ....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEE----QLRPKLL-HCGHTICRQCLEKLLASSI--------NGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTT----SSCEEEC-SSSCEEEHHHHHHHHHHCS--------SCBCCTTTCCCBC
T ss_pred ccCCCCCccCCcccccc----CCCeEEC-CCCChhhHHHHHHHHHcCC--------CCcCCCCCCCccc
Confidence 45678999999985542 2223455 5999999999999998752 1358999999865
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=3e-09 Score=85.24 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=50.1
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCccccc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv~ 269 (399)
.++..|+||++. +..| .+++ |||+||..||.+|.... .+||+||.++.. ++|+
T Consensus 12 p~~~~CpI~~~~-m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~~l~pn----- 66 (85)
T 2kr4_A 12 PDEFRDPLMDTL-MTDP-------VRLP-SGTVMDRSIILRHLLNS-----------PTDPFNRQMLTESMLEPV----- 66 (85)
T ss_dssp CTTTBCTTTCSB-CSSE-------EECT-TSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC-----
T ss_pred chheECcccCch-hcCC-------eECC-CCCEECHHHHHHHHhcC-----------CCCCCCcCCCChHhcchH-----
Confidence 467899999997 5566 5665 99999999999999753 389999998652 4444
Q ss_pred CchhHHHHHHHHHhh
Q 015861 270 TPEEKQEIIDSYKSK 284 (399)
Q Consensus 270 ~~~eK~~li~~yk~~ 284 (399)
..-..+|+.|++.
T Consensus 67 --~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 67 --PELKEQIQAWMRE 79 (85)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3356788888754
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.83 E-value=1.8e-09 Score=95.39 Aligned_cols=71 Identities=25% Similarity=0.457 Sum_probs=49.3
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccCch
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE 272 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~~~ 272 (399)
++..|+||++.+. .| .+ ..|+|+||..||.+|..... ..||+||..+..- .. +....
T Consensus 77 ~~~~C~IC~~~~~-~p-------v~-~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~---~~-l~~n~ 133 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QP-------VT-TECFHNVCKDCLQRSFKAQV----------FSCPACRHDLGQN---YI-MIPNE 133 (150)
T ss_dssp HHTBCTTTSSBCS-SE-------EE-CTTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT---CC-CCBCH
T ss_pred cCCEeecCChhhc-CC-------EE-cCCCCchhHHHHHHHHHhCC----------CcCCCCCccCCCC---CC-CCCCH
Confidence 4678999999754 44 34 46999999999999997542 4799999987632 01 11223
Q ss_pred hHHHHHHHHHhhcc
Q 015861 273 EKQEIIDSYKSKLK 286 (399)
Q Consensus 273 eK~~li~~yk~~~~ 286 (399)
.-+.||+.|+....
T Consensus 134 ~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 134 ILQTLLDLFFPGYS 147 (150)
T ss_dssp HHHHHHHHHSTTTT
T ss_pred HHHHHHHHHhhHhh
Confidence 45578887765443
No 40
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.83 E-value=1e-09 Score=85.40 Aligned_cols=56 Identities=29% Similarity=0.685 Sum_probs=41.3
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++.+|+||++.+ .+| .++ .|+|+||..||.+|....... ......||+||..+.
T Consensus 9 ~~~~~~C~IC~~~~-~~p-------~~l-~CgH~fC~~Ci~~~~~~~~~~----~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELL-TEP-------LSL-DCGHSLCRACITVSNKEAVTS----MGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEEC-SSC-------CCC-SSSCCCCHHHHSCCCCCCSSS----CCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCccc-CCe-------eEC-CCCCHHHHHHHHHHHHhcccC----CCCCCcCCCCCCcCC
Confidence 35678999999984 444 344 699999999999998764211 122468999999875
No 41
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=80.18 Aligned_cols=47 Identities=36% Similarity=0.941 Sum_probs=36.3
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
..++..|+||++.+. +| .++ .|+|+||..||.+|..... ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~-~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ-KP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS-SC-------EEC-TTSSEECHHHHHHHHHHCS--------SCCCCSCC
T ss_pred CccCCCCCcCCchhC-Ce-------EEe-CCCCcchHHHHHHHHHcCC--------CCCcCcCC
Confidence 356789999999854 44 355 6999999999999998532 13589998
No 42
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.82 E-value=2.1e-09 Score=89.97 Aligned_cols=57 Identities=21% Similarity=0.552 Sum_probs=40.2
Q ss_pred CcccccccccccccCC---------cccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 193 QEIECSVCLDRVLSKP---------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~---------~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
++.+|+||++.+.+.- .+++..-.++..|+|.||..||.+|...+ .+||+||..+.|
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-----------SBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-----------CcCcCCCCccee
Confidence 5678999999865430 01122223444699999999999999764 389999998654
No 43
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.82 E-value=2.3e-09 Score=83.89 Aligned_cols=54 Identities=30% Similarity=0.743 Sum_probs=40.5
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.++..|+||++.+ .+| .++ .|+|+||..||.+|...... ......||+||..+.
T Consensus 17 ~~~~~C~IC~~~~-~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELL-KEP-------VSA-DCNHSFCRACITLNYESNRN-----TDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCC-SSC-------EEC-TTSCCBCHHHHHHHHHHSBC-----TTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhh-Ccc-------eeC-CCCCHHHHHHHHHHHHhccC-----CCCCCCCCCCCCcCC
Confidence 4578999999984 444 344 59999999999999987421 112368999999875
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.81 E-value=2.8e-09 Score=84.38 Aligned_cols=55 Identities=24% Similarity=0.546 Sum_probs=39.7
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
..++.+|+||||.+..+ +..|.-+ .|+|.||..||.+|.... ...||+||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~----d~~~~p~-~CGH~fC~~Cl~~~~~~~----------~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEID----DINFFPC-TCGYQICRFCWHRIRTDE----------NGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTT----TTTCCSS-TTSCCCCHHHHHHHTTSS----------CSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccc----ccccccc-CCCCCcCHHHHHHHHhcC----------CCCCCCCCCccCC
Confidence 35678999999976432 2233333 499999999999976432 2489999998763
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.79 E-value=3e-09 Score=94.63 Aligned_cols=69 Identities=28% Similarity=0.503 Sum_probs=46.5
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccCch
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE 272 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~~~ 272 (399)
++..|+||++.+. +| .++..|+|+||..||.+|..... ..||+||..+... .. +....
T Consensus 53 ~~~~C~IC~~~~~-~p-------~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~---~~-l~~~~ 110 (165)
T 2ckl_B 53 SELMCPICLDMLK-NT-------MTTKECLHRFCADCIITALRSGN----------KECPTCRKKLVSK---RS-LRPDP 110 (165)
T ss_dssp HHHBCTTTSSBCS-SE-------EEETTTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCCSG---GG-EEECH
T ss_pred CCCCCcccChHhh-Cc-------CEeCCCCChhHHHHHHHHHHhCc----------CCCCCCCCcCCCc---cc-CCcCH
Confidence 4578999999855 34 45557999999999999997532 4799999986320 00 11223
Q ss_pred hHHHHHHHHHh
Q 015861 273 EKQEIIDSYKS 283 (399)
Q Consensus 273 eK~~li~~yk~ 283 (399)
.-+.||+.++.
T Consensus 111 ~l~~~i~~~~~ 121 (165)
T 2ckl_B 111 NFDALISKIYP 121 (165)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHc
Confidence 34567776654
No 46
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3.7e-09 Score=77.31 Aligned_cols=47 Identities=38% Similarity=0.950 Sum_probs=35.2
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
..++..|+||++.+. +| .++ .|+|+||..||.+|..... ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~-~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK-EP-------VII-ECGHNFCKACITRWWEDLE--------RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS-SC-------CCC-SSCCCCCHHHHHHHTTSSC--------CSCCCSCC
T ss_pred cccCCCCccCCcccC-cc-------EeC-CCCCccCHHHHHHHHHhcC--------CCCCCCCC
Confidence 346789999999854 44 344 6999999999999976421 13589998
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.79 E-value=1.1e-09 Score=91.80 Aligned_cols=50 Identities=26% Similarity=0.769 Sum_probs=39.4
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.++..|+||++.+. +| .++ .|+|+||..||.+|..... ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~-~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EP-------VTL-PCNHTLCKPCFQSTVEKAS----------LCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SC-------EEC-TTSCEECHHHHCCCCCTTT----------SBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ce-------eEc-CCCCHHhHHHHHHHHhHCc----------CCCCCCCcccCc
Confidence 34678999999854 45 455 6999999999999986432 489999998763
No 48
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=4.8e-09 Score=85.46 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=53.6
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCC--CCCC---cceeecCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKL---SYFVIPSVI 266 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~---s~~viPs~~ 266 (399)
.++..|+||++. +..| .+++.|+|+||..||.+|...... .+...+||+ |+.. ..-++|+.
T Consensus 5 ~~~~~CPI~~~~-~~dP-------V~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~~~L~pn~- 70 (94)
T 2yu4_A 5 SSGFTCPITKEE-MKKP-------VKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRKSDLIQDE- 70 (94)
T ss_dssp SSCCBCTTTCSB-CSSE-------EEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCGGGEEECH-
T ss_pred CcEeECcCcCch-hcCC-------EEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCHhhCcCCH-
Confidence 467899999997 5566 566579999999999999875310 011358999 9954 44566663
Q ss_pred cccCchhHHHHHHHHHhhcc
Q 015861 267 WYYTPEEKQEIIDSYKSKLK 286 (399)
Q Consensus 267 wv~~~~eK~~li~~yk~~~~ 286 (399)
.-..+|+.|++...
T Consensus 71 ------~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 71 ------ALRRAIENHNKKRH 84 (94)
T ss_dssp ------HHHHHHHHHHTTCC
T ss_pred ------HHHHHHHHHHHHhc
Confidence 35678999986654
No 49
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=3.3e-09 Score=83.01 Aligned_cols=55 Identities=29% Similarity=0.751 Sum_probs=40.2
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++.+|+||++.+. +| .++ .|+|+||..||.+|...... ......||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~-~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLT-QP-------LSL-DCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCS-SC-------BCC-SSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccC-Cc-------eeC-CCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccC
Confidence 345789999999854 44 344 69999999999999876210 011358999999876
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=2e-09 Score=90.95 Aligned_cols=55 Identities=29% Similarity=0.724 Sum_probs=41.0
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+++.+|+||++.+.+ |..++ +..++..|+|+||..||.+|...+ .+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~-~~~~~-~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSE-IVQNG-RLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHH-HHHTT-CCEEEETTCCEEEHHHHHHHHTTC-----------SBCTTTCCBCT
T ss_pred CCCCCCcccChhhhC-ccccc-cCeEecCCCChhhHHHHHHHHHhC-----------CCCCCCCCcCc
Confidence 567899999998543 21111 223555799999999999999754 38999999886
No 51
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.78 E-value=7.5e-10 Score=90.12 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=46.7
Q ss_pred ccccccccccccCCCC-CCCCCCCCCC-----CCCCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 4 RVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 4 ~~~Cryf~~G~C~~G~-~C~fsHd~~~-----~~~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
..+|++|++|.|.+|+ .|+|+|..+. ...++|.+|++|.|.++ .|+|.|..+.
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCC-CcceecCHHH
Confidence 5689999999999998 9999998763 35689999999999986 9999998764
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=2.5e-09 Score=90.29 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=39.5
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++..|+||++.+. .| .++ .|+|+||..||.+|...+. .+||+||..+.
T Consensus 15 ~~~~~~C~IC~~~~~-~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 64 (118)
T 3hct_A 15 LESKYECPICLMALR-EA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILL 64 (118)
T ss_dssp CCGGGBCTTTCSBCS-SE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCC
T ss_pred CCCCCCCCcCChhhc-Ce-------EEC-CcCChhhHHHHHHHHhhCC----------CCCCCCCCCcC
Confidence 355689999999854 43 344 6999999999999998653 28999999865
No 53
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=9.3e-10 Score=83.99 Aligned_cols=49 Identities=39% Similarity=0.901 Sum_probs=38.7
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
..++..|+||++.+.+ .++ .|+|.||..||.+|...+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---------LIL-PCAHSFCQKCIDKWSDRH-----------RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS---------EEE-TTTEEECHHHHHHSSCCC-----------SSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC---------ccc-CCCCcccHHHHHHHHHCc-----------CcCCCcCCcccC
Confidence 3557899999998432 355 599999999999998743 489999988763
No 54
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.76 E-value=2.8e-09 Score=83.56 Aligned_cols=28 Identities=29% Similarity=0.812 Sum_probs=24.4
Q ss_pred CCCCCCccCC-CCCCCCCCCCcCCCCCCC
Q 015861 30 PPNNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 30 ~~~~vCr~f~-~G~C~~G~~C~y~H~~~~ 57 (399)
.++.+|++|+ .|.|.+|++|+|+|....
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 4578999996 999999999999997654
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.74 E-value=8.4e-09 Score=84.98 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=50.2
Q ss_pred cCcccccccccccccCCcccccceeecCCCC-CcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCcccc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECD-HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~-H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv 268 (399)
.++..|+||++. +..| .++ .|+ |+||..||.+|.... .+||+||.++.. ++|+
T Consensus 20 p~~~~CpI~~~~-m~dP-------V~~-~cG~htf~r~cI~~~l~~~-----------~~cP~~~~~l~~~~L~pn---- 75 (98)
T 1wgm_A 20 CDEFLDPIMSTL-MCDP-------VVL-PSSRVTVDRSTIARHLLSD-----------QTDPFNRSPLTMDQIRPN---- 75 (98)
T ss_dssp CTTTBCTTTCSB-CSSE-------EEC-TTTCCEEEHHHHHHHTTTS-----------CBCTTTCSBCCTTTSEEC----
T ss_pred cHhcCCcCcccc-ccCC-------eEC-CCCCeEECHHHHHHHHHhC-----------CCCCCCCCCCChhhceEc----
Confidence 457899999997 5566 455 599 999999999998752 389999998752 3333
Q ss_pred cCchhHHHHHHHHHhhc
Q 015861 269 YTPEEKQEIIDSYKSKL 285 (399)
Q Consensus 269 ~~~~eK~~li~~yk~~~ 285 (399)
..-..+|+.|++.-
T Consensus 76 ---~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 76 ---TELKEKIQRWLAER 89 (98)
T ss_dssp ---HHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHc
Confidence 34567888887653
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=5.9e-09 Score=87.78 Aligned_cols=67 Identities=21% Similarity=0.591 Sum_probs=46.3
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccCc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~~ 271 (399)
.++..|+||++.+ ..| .++..|+|+||..||..|.. ..||+||..+.. +. +...
T Consensus 20 ~~~~~C~IC~~~~-~~p-------v~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~--~~---~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNIL-REP-------VCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWI--QD---LKIN 73 (117)
T ss_dssp HHTTSCSSSCSCC-SSC-------BCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSC--SS---CCCC
T ss_pred hhCCCCCCCChHh-hCc-------cEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCcc--cc---cccc
Confidence 3578999999985 445 45547999999999999985 279999998742 11 1122
Q ss_pred hhHHHHHHHHHhh
Q 015861 272 EEKQEIIDSYKSK 284 (399)
Q Consensus 272 ~eK~~li~~yk~~ 284 (399)
..-..||+.|+..
T Consensus 74 ~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 74 RQLDSMIQLCSKL 86 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2344666666543
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.73 E-value=8.6e-09 Score=85.25 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=51.3
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCccccc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv~ 269 (399)
.++..|+||++. +..| .+++ |||+||..||.+|.... .+||+||.++.. ++|+
T Consensus 27 p~~~~CpI~~~~-m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~~L~pn----- 81 (100)
T 2kre_A 27 PDEFRDPLMDTL-MTDP-------VRLP-SGTIMDRSIILRHLLNS-----------PTDPFNRQTLTESMLEPV----- 81 (100)
T ss_dssp STTTBCTTTCSB-CSSE-------EEET-TTEEEEHHHHHHHTTSC-----------SBCSSSCCBCCTTSSEEC-----
T ss_pred cHhhCCcCccCc-ccCC-------eECC-CCCEEchHHHHHHHHcC-----------CCCCCCCCCCChhhceEC-----
Confidence 457899999997 5566 5666 99999999999999742 389999998752 3443
Q ss_pred CchhHHHHHHHHHhhcc
Q 015861 270 TPEEKQEIIDSYKSKLK 286 (399)
Q Consensus 270 ~~~eK~~li~~yk~~~~ 286 (399)
..-..+|+.|++.-.
T Consensus 82 --~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 82 --PELKEQIQAWMREKQ 96 (100)
T ss_dssp --HHHHHHHHHHHHTTT
T ss_pred --HHHHHHHHHHHHHhh
Confidence 345678888876543
No 58
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.73 E-value=4.7e-09 Score=82.08 Aligned_cols=26 Identities=23% Similarity=0.741 Sum_probs=23.8
Q ss_pred CCCCCCccCCCCCCCCCCCCcCCCCC
Q 015861 30 PPNNICTYYQKGFCSYGSRCRYEHVK 55 (399)
Q Consensus 30 ~~~~vCr~f~~G~C~~G~~C~y~H~~ 55 (399)
.+..+|+||++|.|.+|+.|+|+|..
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~ 39 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEY 39 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCcccc
Confidence 56789999999999999999999964
No 59
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.72 E-value=7e-09 Score=86.93 Aligned_cols=47 Identities=30% Similarity=0.735 Sum_probs=37.9
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
+..|+||++.+. +| +...|+|+||..||.+|..... .+||+||..+.
T Consensus 23 ~~~C~IC~~~~~-~p--------~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILA-DP--------VETSCKHLFCRICILRCLKVMG----------SYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCS-SE--------EECTTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCCCcHhc-Cc--------EEcCCCCcccHHHHHHHHhHCc----------CcCCCCCCCCC
Confidence 578999999854 44 3347999999999999998642 37999999865
No 60
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=7.6e-09 Score=81.73 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=24.1
Q ss_pred CCCCCCccCCCCCCCCCCCCcCCCCCC
Q 015861 30 PPNNICTYYQKGFCSYGSRCRYEHVKP 56 (399)
Q Consensus 30 ~~~~vCr~f~~G~C~~G~~C~y~H~~~ 56 (399)
.+..+|+||++|.|.+|++|+|+|...
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYD 34 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred CcceeCHhHccCcCCCCCCCCCccccc
Confidence 467899999999999999999999653
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.67 E-value=7.1e-09 Score=78.71 Aligned_cols=56 Identities=18% Similarity=0.570 Sum_probs=41.6
Q ss_pred hCcCcccccccccccccCCcccccceeec-CCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil-~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
...++.+|.|||+...+ + .++ ..|+|. ||..|+.+|...+ ..||+||..+..+|+-
T Consensus 4 ~~~~~~~C~IC~~~~~~-~-------~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKN-G-------CIVHGKTGHLMACFTCAKKLKKRN-----------KPCPVCRQPIQMIVLT 61 (64)
T ss_dssp -CGGGSCCTTTSSSCSC-E-------EEEETTEEEEEECHHHHHHHHHTT-----------CCCTTTCCCCCEEEEE
T ss_pred CCCCcCCCCcCCCCCCC-E-------EEECCCCCChhhHHHHHHHHHHcC-----------CcCCCcCcchhceEee
Confidence 34567899999997332 1 232 259999 8999999998643 3799999998877653
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=2.9e-09 Score=78.54 Aligned_cols=46 Identities=30% Similarity=0.674 Sum_probs=36.1
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++..|+||++.+ .+| .+|+ |+|+||..||.+|. ..||+||..+.
T Consensus 3 e~~~~~C~IC~~~~-~~p-------~~l~-CgH~fC~~Ci~~~~--------------~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEA-KCP-------KLLP-CLHTLCSGCLEASG--------------MQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSC-BCC-------SCST-TSCCSBTTTCSSSS--------------SSCSSCCSSSS
T ss_pred cccCCCceEeCCcc-CCe-------EEcC-CCCcccHHHHccCC--------------CCCCcCCcEee
Confidence 35678999999974 444 4554 99999999998842 37999999875
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.63 E-value=9.5e-09 Score=89.92 Aligned_cols=50 Identities=26% Similarity=0.708 Sum_probs=39.4
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
...++..|+||++.+. .| +...|+|+||..||.+|..... ..||+||...
T Consensus 27 ~l~~~~~C~IC~~~~~-~p--------v~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR-RP--------FQAQCGHRYCSFCLASILSSGP----------QNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCS-SE--------EECTTSCEEEHHHHHHHGGGSC----------EECHHHHHTT
T ss_pred cCCcCcCCCCCChhhc-Cc--------EECCCCCccCHHHHHHHHhcCC----------CCCCCCCCcc
Confidence 3456789999999854 44 4457999999999999987542 4899999975
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.62 E-value=4.4e-09 Score=89.70 Aligned_cols=57 Identities=21% Similarity=0.535 Sum_probs=0.9
Q ss_pred CcccccccccccccCCc---------ccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 193 QEIECSVCLDRVLSKPT---------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~---------~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.+..|+||++.+.+.-. +++..-.++..|+|.||..||..|...+. +||+||..+.|
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-----------~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-----------VCPLDNREWEF 112 (117)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-----------cCCCCCCeeee
Confidence 35689999999754210 01122234457999999999999998643 79999998654
No 65
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.60 E-value=1.1e-08 Score=79.61 Aligned_cols=47 Identities=28% Similarity=0.709 Sum_probs=37.4
Q ss_pred CcccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
++..|.||++.+.+ + .++ .|+|. ||..||.+| . .||+||..+..++.
T Consensus 23 ~~~~C~iC~~~~~~-~-------~~~-pCgH~~~C~~C~~~~----~-----------~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-I-------VFV-PCGHLVTCKQCAEAV----D-----------KCPMCYTVITFKQK 70 (74)
T ss_dssp HHTBCTTTSSSBCC-E-------EEE-TTCCBCCCHHHHTTC----S-----------BCTTTCCBCSEEEE
T ss_pred cCCCCCCCCCCCCC-E-------EEc-CCCChhHHHHhhhcC----c-----------cCCCcCcCccCcEE
Confidence 46789999998443 2 344 69999 999999999 1 79999999887654
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=3.3e-08 Score=93.48 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=50.3
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc--eeecCccccc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIWYY 269 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~--~viPs~~wv~ 269 (399)
..+..|+||++. +..| .+++ |+|+||..||..|..... .+||+||.++. -++|+
T Consensus 206 ~~~~~c~i~~~~-~~dP-------v~~~-~gh~f~~~~i~~~~~~~~----------~~cP~~~~~~~~~~l~~n----- 261 (281)
T 2c2l_A 206 PDYLCGKISFEL-MREP-------CITP-SGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQEQLIPN----- 261 (281)
T ss_dssp CSTTBCTTTCSB-CSSE-------EECS-SCCEEETTHHHHHHHHTC----------SSCTTTCCCCCGGGCEEC-----
T ss_pred CcccCCcCcCCH-hcCC-------eECC-CCCEECHHHHHHHHHHCC----------CCCcCCCCCCchhcCccc-----
Confidence 457899999997 5556 4555 999999999999997643 25999999875 24444
Q ss_pred CchhHHHHHHHHHhh
Q 015861 270 TPEEKQEIIDSYKSK 284 (399)
Q Consensus 270 ~~~eK~~li~~yk~~ 284 (399)
..-..+|+.|...
T Consensus 262 --~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 262 --LAMKEVIDAFISE 274 (281)
T ss_dssp --HHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHH
Confidence 3356788888754
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.57 E-value=1.8e-08 Score=84.98 Aligned_cols=56 Identities=30% Similarity=0.717 Sum_probs=41.5
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++..|+||++.+.+ +....+ ..++..|+|+||..||.+|...+ ++||+||..+.
T Consensus 69 ~~~~~~C~iC~~~~~~-~~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSE-IVQNGR-LIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHH-HHHTTC-CEEEETTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCcccc-ccccCc-ceEeCCCCChhhHHHHHHHHHcC-----------CCCCCCCCcCC
Confidence 3567899999998543 211122 23555799999999999999865 48999998764
No 68
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.56 E-value=3.9e-08 Score=99.33 Aligned_cols=55 Identities=27% Similarity=0.617 Sum_probs=41.7
Q ss_pred hCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 190 ~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
..+.+.+|+||++.+. + .++..|+|.||..||..|..... .+||+||..+.....
T Consensus 328 ~~~~~~~C~ICle~~~-~--------pv~lpCGH~FC~~Ci~~wl~~~~----------~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 328 MGSTFQLCKICAENDK-D--------VKIEPCGHLMCTSCLTSWQESEG----------QGCPFCRCEIKGTEP 382 (389)
T ss_dssp TTTSSSBCTTTSSSBC-C--------EEEETTCCEECHHHHHHHHHHTC----------SBCTTTCCBCCEEEE
T ss_pred hcCCCCCCCccCcCCC-C--------eEEeCCCChhhHHHHHHHHhcCC----------CCCCCCCCccCCcee
Confidence 3445689999999853 3 34456999999999999997432 489999998875443
No 69
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.52 E-value=3.3e-08 Score=74.75 Aligned_cols=54 Identities=28% Similarity=0.605 Sum_probs=39.8
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
+.+.+|.|||+...+ + .+ ++..|+|. ||..|+.+|.... ..||+||.++..+|.
T Consensus 5 ~~~~~C~IC~~~~~~-~-----~~-~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD-G-----NI-IHGRTGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVIK 59 (63)
T ss_dssp GGGSBCTTTSSSBSC-E-----EE-EETTEEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEEE
T ss_pred CcCCCCcccCCcCCC-e-----EE-EecCCCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceEE
Confidence 456789999997322 1 11 22359998 9999999988643 379999999887664
No 70
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.51 E-value=4.1e-08 Score=76.16 Aligned_cols=25 Identities=36% Similarity=0.903 Sum_probs=22.3
Q ss_pred CCCCccCCCCCCCCCC-CCcCCCCCC
Q 015861 32 NNICTYYQKGFCSYGS-RCRYEHVKP 56 (399)
Q Consensus 32 ~~vCr~f~~G~C~~G~-~C~y~H~~~ 56 (399)
..+|++|++|.|.+|+ .|+|+|...
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 4699999999999999 599999764
No 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=4.9e-08 Score=78.99 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=48.3
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCC--CCCCcceeecCccccc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLSYFVIPSVIWYY 269 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~s~~viPs~~wv~ 269 (399)
++..+|+||++.+. .+ .+-.|..|+|.||..||++|...+-..+ ......||. ||..+. +.|... .
T Consensus 3 ~~~~~C~IC~~~~~-~~-----~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~~~-~~~~~i--~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYP-VE-----QMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQGH-LQENEI--E 70 (94)
T ss_dssp CSBCCCSSSCCCCB-GG-----GEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSCCE-ECHHHH--H
T ss_pred CCCcCCcccCcccc-cc-----cceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCCCc-cCHHHH--H
Confidence 46789999999843 22 2233457999999999999776531111 012358999 998732 122211 0
Q ss_pred CchhHHHHHHHHHhhc
Q 015861 270 TPEEKQEIIDSYKSKL 285 (399)
Q Consensus 270 ~~~eK~~li~~yk~~~ 285 (399)
.--..+++++|++.+
T Consensus 71 -~ll~~~~~~ky~~~~ 85 (94)
T 1wim_A 71 -CMVAAEIMQRYKKLQ 85 (94)
T ss_dssp -HHSCHHHHHHHHHHH
T ss_pred -HHCCHHHHHHHHHHH
Confidence 001236777787644
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.44 E-value=8.7e-08 Score=85.44 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=39.6
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
..++..|+||++.+. .| +...|+|+||..||.+|...+. ..||+||..+.
T Consensus 15 ~~~~~~C~IC~~~~~-~p--------v~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 64 (170)
T 3hcs_A 15 LESKYECPICLMALR-EA--------VQTPCGHRFCKACIIKSIRDAG----------HKCPVDNEILL 64 (170)
T ss_dssp CCGGGBCTTTCSBCS-SE--------EECTTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCC
T ss_pred CCCCCCCCCCChhhc-Cc--------EECCCCCHHHHHHHHHHHHhCC----------CCCCCCccCcc
Confidence 456789999999854 44 3346999999999999987643 38999998865
No 73
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1e-07 Score=75.83 Aligned_cols=54 Identities=22% Similarity=0.526 Sum_probs=40.2
Q ss_pred CcCcccccccccccccCCcccccceeecCCCC-----CcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~-----H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.+++..|.||++.+.+. + .. +++ |+ |.|+..||.+|...+. ..+||+||..+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~----~-~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDE----S-PL-ITP-CHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSS----S-CE-ECS-SSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCC----C-ee-Eec-cccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeeec
Confidence 35567899999874322 1 22 554 86 9999999999998753 2489999998764
No 74
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=7e-08 Score=75.06 Aligned_cols=47 Identities=28% Similarity=0.718 Sum_probs=35.2
Q ss_pred CcccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
++.+|.||++.+. .+ ++..|+|. ||..||.++ ..||+||..+..++.
T Consensus 24 ~~~~C~IC~~~~~-~~--------~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AI--------VFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQK 71 (75)
T ss_dssp HHHSCSSSCSSCC-CB--------CCSSSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCCB
T ss_pred CCCCCCcCCCCCC-CE--------EEecCCCHHHHHHHhhCC---------------CCCccCCceecCcEE
Confidence 3568999999843 33 44469999 999999532 379999998876543
No 75
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.42 E-value=2.2e-07 Score=84.73 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=50.6
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce--eecCccccc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~--viPs~~wv~ 269 (399)
..+..|+||++. +..| .++ .|||+||..||..|..... .+||+||.++.. ++|+.
T Consensus 104 p~~f~CPI~~el-m~DP-------V~~-~~Ghtfer~~I~~~l~~~~----------~tcP~t~~~l~~~~L~pN~---- 160 (179)
T 2f42_A 104 PDYLCGKISFEL-MREP-------CIT-PSGITYDRKDIEEHLQRVG----------HFDPVTRSPLTQDQLIPNL---- 160 (179)
T ss_dssp CGGGBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCGGGCEECH----
T ss_pred cHhhcccCcccc-CCCC-------eEC-CCCCEECHHHHHHHHHhCC----------CCCCCCcCCCChhhCcchH----
Confidence 456899999997 5566 455 5999999999999997642 269999998753 55553
Q ss_pred CchhHHHHHHHHHhh
Q 015861 270 TPEEKQEIIDSYKSK 284 (399)
Q Consensus 270 ~~~eK~~li~~yk~~ 284 (399)
.-..+|+.|+..
T Consensus 161 ---~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 161 ---AMKEVIDAFIQE 172 (179)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 355788888754
No 76
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=4.6e-08 Score=80.87 Aligned_cols=26 Identities=31% Similarity=0.829 Sum_probs=23.2
Q ss_pred CCCCCccCCCCCCCCCC-CCcCCCCCC
Q 015861 31 PNNICTYYQKGFCSYGS-RCRYEHVKP 56 (399)
Q Consensus 31 ~~~vCr~f~~G~C~~G~-~C~y~H~~~ 56 (399)
+..+|++|++|.|.+|+ .|+|+|...
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 46799999999999999 799999764
No 77
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=4.5e-07 Score=71.21 Aligned_cols=54 Identities=19% Similarity=0.483 Sum_probs=41.8
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecC
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs 264 (399)
-.+|+||.+.|... . .-..|+|.|...||.+|.+.++ ..+||+||....+-+|.
T Consensus 15 i~~C~IC~~~i~~g----~----~C~~C~h~fH~~Ci~kWl~~~~---------~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 15 VKICNICHSLLIQG----Q----SCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SCBCSSSCCBCSSS----E----ECSSSCCEECHHHHHHHSTTCS---------SCCCTTTCSCCCSCCCC
T ss_pred CCcCcchhhHcccC----C----ccCCCCchhhHHHHHHHHHhcC---------CCCCCCCcCcCCCCCCC
Confidence 46899999998732 1 1227999999999999997653 14899999988776654
No 78
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.29 E-value=4.5e-07 Score=87.03 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=49.3
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCC--CCCCcce--eecCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLSYF--VIPSVI 266 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~s~~--viPs~~ 266 (399)
...+..|+||++.+ ..| .++..|||+||..||.+|..... ...||+ ||..+.. ++|+
T Consensus 178 ~~~el~CPIcl~~f-~DP-------Vts~~CGHsFcR~cI~~~~~~~~---------~~~CPvtGCr~~l~~~dL~pN-- 238 (267)
T 3htk_C 178 GKIELTCPITCKPY-EAP-------LISRKCNHVFDRDGIQNYLQGYT---------TRDCPQAACSQVVSMRDFVRD-- 238 (267)
T ss_dssp SBCCSBCTTTSSBC-SSE-------EEESSSCCEEEHHHHHHHSTTCS---------CEECSGGGCSCEECGGGEEEC--
T ss_pred CceeeECcCccCcc-cCC-------eeeCCCCCcccHHHHHHHHHhCC---------CCCCCcccccCcCchhhCCcC--
Confidence 45678999999984 555 44557999999999999886432 258999 9996542 4444
Q ss_pred cccCchhHHHHHHHHHhhc
Q 015861 267 WYYTPEEKQEIIDSYKSKL 285 (399)
Q Consensus 267 wv~~~~eK~~li~~yk~~~ 285 (399)
..-..+|+.++.+.
T Consensus 239 -----~~L~~lve~~k~r~ 252 (267)
T 3htk_C 239 -----PIMELRCKIAKMKE 252 (267)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 23345666665543
No 79
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.28 E-value=1.6e-07 Score=74.13 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=36.7
Q ss_pred CcccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
++..|.||++...+ + .++ .|+|. ||..|+..|. .||+||..+..++.
T Consensus 17 ~~~~C~IC~~~~~~-~-------v~~-pCgH~~~C~~C~~~~~---------------~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 17 EAMLCMVCCEEEIN-S-------TFC-PCGHTVCCESCAAQLQ---------------SCPVCRSRVEHVQH 64 (79)
T ss_dssp HHTBCTTTSSSBCC-E-------EEE-TTCBCCBCHHHHTTCS---------------BCTTTCCBCCEEEE
T ss_pred CCCEeEEeCcccCc-E-------EEE-CCCCHHHHHHHHHhcC---------------cCCCCCchhhCeEE
Confidence 45689999997432 2 445 59999 9999998773 69999999987654
No 80
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.27 E-value=3.9e-07 Score=73.12 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=22.9
Q ss_pred CCCCCccCCCCCCCCCC-CCcCCCCCC
Q 015861 31 PNNICTYYQKGFCSYGS-RCRYEHVKP 56 (399)
Q Consensus 31 ~~~vCr~f~~G~C~~G~-~C~y~H~~~ 56 (399)
+..+|++|++|.|.+|+ .|+|+|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 35799999999999996 999999754
No 81
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.20 E-value=6.6e-07 Score=72.69 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCC-CCcCCCCCC
Q 015861 18 GEHCEFSHDWKDPPNNICTYYQKGFCSYGS-RCRYEHVKP 56 (399)
Q Consensus 18 G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~-~C~y~H~~~ 56 (399)
|..+.+.++.. .+..||++|++|.|.+|+ .|+|+|...
T Consensus 4 ~~~~~~~~~~~-~~~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 4 GSSGPVRDTKW-LTLEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp CCCSCCCSCSS-SEECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred cccccccCCCc-chhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 55666665432 246799999999999998 999999654
No 82
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.2e-06 Score=67.16 Aligned_cols=49 Identities=24% Similarity=0.752 Sum_probs=37.5
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
+.++..|.|||+...+ .++..|+|. ||..|+.. .+.||+||..+..++.
T Consensus 12 ~~~~~~C~IC~~~~~~---------~v~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---------WVLLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCCSSCCSSSSSSCCC---------CEETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCCcCcCCCC---------EEEECCCChhhhHHHHhc---------------CCCCCCCCcchhceEE
Confidence 4567899999997332 344559999 99999983 1379999999887654
No 83
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.00 E-value=5.5e-06 Score=77.52 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.2
Q ss_pred cCchhccCCCCCCCCCcccCCCC
Q 015861 133 ICSFAAAGNCPRGEKCPHIHGDT 155 (399)
Q Consensus 133 ~C~f~~~G~C~~G~~C~y~Hg~~ 155 (399)
+|.+|..|.|.+ .+|.-.|...
T Consensus 177 IC~~Fl~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 177 ICEHFTRGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp SCHHHHTTCCCC-SSCSSCCCTT
T ss_pred ccchhhcCCcCC-CCccCccCcc
Confidence 599999999999 7999998654
No 84
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.93 E-value=2e-06 Score=85.70 Aligned_cols=48 Identities=33% Similarity=0.796 Sum_probs=38.0
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCc-ccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeec
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viP 263 (399)
.++..|.|||+.+.+ | .++ .|+|. ||..||..|. .||+||..+..++.
T Consensus 293 ~~~~~C~IC~~~~~~-~-------v~l-pCgH~~fC~~C~~~~~---------------~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS-V-------VFI-PCGHLVVCQECAPSLR---------------KCPICRGIIKGTVR 341 (345)
T ss_dssp HTTCBCTTTSSSBCC-E-------EEE-TTCCEEECTTTGGGCS---------------BCTTTCCBCCEEEE
T ss_pred cCCCCCCccCCcCCc-e-------EEc-CCCChhHhHHHHhcCC---------------cCCCCCCCccCeEE
Confidence 356899999998543 2 345 69999 9999999881 69999999887653
No 85
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.91 E-value=5.9e-06 Score=68.19 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=37.2
Q ss_pred ccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCccee
Q 015861 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (399)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~v 261 (399)
|.+|--.|. .||-+..|.|+||++|+..|.+.+. ++||.||.++..|
T Consensus 4 C~~C~~Pi~--------iygRmIPCkHvFCydCa~~~~~~~~----------k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 4 CDKCGLPIK--------VYGRMIPCKHVFCYDCAILHEKKGD----------KMCPGCSDPVQRI 50 (101)
T ss_dssp CTTTCSBCS--------EEEEEETTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCSEE
T ss_pred cCccCCCeE--------EEeeeccccccHHHHHHHHHHhccC----------CCCcCcCCeeeee
Confidence 667766554 3566777999999999999987654 5899999998764
No 86
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.87 E-value=4.1e-06 Score=83.24 Aligned_cols=66 Identities=15% Similarity=0.388 Sum_probs=42.9
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
...+|+||++.+.+...-.++. --.+.|+|.|...||.+|..+...+...-+.+..+||.||.+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~-C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVS-CDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBC-CSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCcccc-ccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3458999999977622111111 11347999999999999997643211112456679999998653
No 87
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.69 E-value=1.9e-05 Score=59.40 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=40.0
Q ss_pred cccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc--eeecC
Q 015861 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (399)
Q Consensus 194 d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~--~viPs 264 (399)
...|+|+++. ++.| .+++.++|+|+.+||.+|..... +||+.+.+.. -+||.
T Consensus 3 ~~~CpIs~~~-m~dP-------V~~~~sG~~yer~~I~~~l~~~~-----------~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKV-PRRP-------VLSPKSRTIFEKSLLEQYVKDTG-----------NDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSC-CSSE-------EEETTTTEEEEHHHHHHHHHHHS-----------BCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCCC-CCCC-------EEeCCCCcEEcHHHHHHHHHhCC-----------CCcCCcCCCChhhcEEC
Confidence 4679999997 5555 56647999999999999998642 6999998874 25554
No 88
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.68 E-value=3e-05 Score=58.19 Aligned_cols=53 Identities=21% Similarity=0.463 Sum_probs=37.9
Q ss_pred CcCcccccccccccccCCcccccceeecC-CCCC---cccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS-ECDH---PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~-~C~H---~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.+++..|-||++.. +. .+ +++ +|.| .|..+||.+|...+. ..+||+||..+.+
T Consensus 3 ~~~~~~CrIC~~~~-~~------~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL-GN------ER-FRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC-SC------CC-CCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC-CC------ce-ecCcCCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCeeec
Confidence 35677899999962 21 12 444 2445 899999999998653 2589999998753
No 89
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.49 E-value=0.0011 Score=62.18 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=39.5
Q ss_pred ccccccccc-----cccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 4 RVLCKFFAH-----GACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 4 ~~~Cryf~~-----G~C~~G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
..+|.+| + |.|+.++.|...| ||+||++|.|++ .+|+.+|....
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH--------IC~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLH--------ICEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBC--------SCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred chHHHHh-CCCCCCCcCCCCCCCccee--------ccchhhcCCcCC-CCccCccCccC
Confidence 3689999 6 5999999999999 999999999999 89999998754
No 90
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.47 E-value=0.0024 Score=49.24 Aligned_cols=25 Identities=40% Similarity=0.864 Sum_probs=22.4
Q ss_pred CCccCchhccCCCCCCCCCcccCCC
Q 015861 130 DRSICSFAAAGNCPRGEKCPHIHGD 154 (399)
Q Consensus 130 ~~~~C~f~~~G~C~~G~~C~y~Hg~ 154 (399)
+..+|..|..|.|+||+.|.|+||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSH
T ss_pred CcccCcccCcCCCCCCCccCCcCCH
Confidence 4589977799999999999999995
No 91
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.0011 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.811 Sum_probs=16.3
Q ss_pred CCCCccCCCCCCCCCCCCcCCCCCCC
Q 015861 32 NNICTYYQKGFCSYGSRCRYEHVKPS 57 (399)
Q Consensus 32 ~~vCr~f~~G~C~~G~~C~y~H~~~~ 57 (399)
..+|+.|++|.|.||++|.|+|....
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred cccCcccCcCCCCCCCccCCcCCHHH
Confidence 35666666666666666666665443
No 92
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.95 E-value=0.013 Score=55.23 Aligned_cols=55 Identities=22% Similarity=0.533 Sum_probs=42.5
Q ss_pred CcccccccccccccCCcccccceee-cCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGL-LSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV 265 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgi-l~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~ 265 (399)
.-..|.||.+.|.. |+ =++|+|.|...|+.+|.+... ...||.|+....+-+|..
T Consensus 179 ~i~~C~iC~~iv~~---------g~~C~~C~~~~H~~C~~~~~~~~~---------~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 179 AVKICNICHSLLIQ---------GQSCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TCCBCTTTCSBCSS---------CEECSSSCCEECHHHHHHHTTTCS---------SCBCTTTCCBCCSCCCCC
T ss_pred CCCcCcchhhHHhC---------CcccCccChHHHHHHHHHHHHhCC---------CCCCCCCCCCCCCCCCCC
Confidence 45789999999873 33 235999999999999987543 248999999877766653
No 93
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.64 E-value=0.01 Score=47.81 Aligned_cols=34 Identities=15% Similarity=0.592 Sum_probs=26.1
Q ss_pred CcccccccccccccCCcccccceeec--CCCCCcccHHHHHH-HH
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLL--SECDHPFCISCIRN-WR 234 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil--~~C~H~FC~~CI~~-W~ 234 (399)
+++.|.||++.+..+| +. ..|+|.||..||+. |.
T Consensus 2 ee~~C~~C~~~~~~~a--------v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA--------VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC--------CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc--------eEECCcCChHHhHHHCHHHhc
Confidence 4689999998644443 33 46999999999998 55
No 94
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.29 E-value=0.053 Score=38.99 Aligned_cols=28 Identities=43% Similarity=0.869 Sum_probs=23.8
Q ss_pred CCCccC-chhccCCCCCCCCCcccCCCCC
Q 015861 129 ADRSIC-SFAAAGNCPRGEKCPHIHGDTC 156 (399)
Q Consensus 129 ~~~~~C-~f~~~G~C~~G~~C~y~Hg~~c 156 (399)
....+| .|++-|+|++|.+|.+.|..-.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 356789 7999999999999999997543
No 95
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=93.98 E-value=0.015 Score=41.79 Aligned_cols=25 Identities=36% Similarity=0.712 Sum_probs=13.7
Q ss_pred cccccccc-ccccCCCCCCCCCCCCC
Q 015861 4 RVLCKFFA-HGACLKGEHCEFSHDWK 28 (399)
Q Consensus 4 ~~~Cryf~-~G~C~~G~~C~fsHd~~ 28 (399)
+.+|.-|. .|-|.+|.+|.++||.+
T Consensus 20 ~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp SCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cchhhhccccccCCCCCCCCccccCC
Confidence 44564443 46666666666666543
No 96
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.69 E-value=0.029 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.7
Q ss_pred CccCchhccCCCCCCCCCcccCCC
Q 015861 131 RSICSFAAAGNCPRGEKCPHIHGD 154 (399)
Q Consensus 131 ~~~C~f~~~G~C~~G~~C~y~Hg~ 154 (399)
.-+|+||+.|.|.+|++|+|+|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 458999999999999999999963
No 97
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.21 E-value=0.029 Score=53.00 Aligned_cols=27 Identities=33% Similarity=0.926 Sum_probs=24.5
Q ss_pred CCCCccCCCCCCCCCCCCcCCCCCCCC
Q 015861 32 NNICTYYQKGFCSYGSRCRYEHVKPSR 58 (399)
Q Consensus 32 ~~vCr~f~~G~C~~G~~C~y~H~~~~~ 58 (399)
..+|-||.+|.|.+|..|.|.|..|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCCCH
T ss_pred CeEcCccccCCCCCCCCCCccCCCCCc
Confidence 469999999999999999999988764
No 98
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=87.37 E-value=0.11 Score=41.12 Aligned_cols=42 Identities=24% Similarity=0.590 Sum_probs=33.1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCC
Q 015861 4 RVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHV 54 (399)
Q Consensus 4 ~~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~~C~y~H~ 54 (399)
...||||. .|++ ..|.|.|... ...|+|+. .|.+ ..|.|.|.
T Consensus 9 ~e~CKf~~--~Ctn-~~C~f~Hp~~---~~~Cr~g~--~C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGT--HCTN-KRCKYRHARS---HIMCREGA--NCTR-IDCLFGHP 50 (80)
Confidence 35799998 5988 9999999642 45899984 6886 78999994
No 99
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=76.97 E-value=0.6 Score=36.82 Aligned_cols=41 Identities=27% Similarity=0.626 Sum_probs=30.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCC
Q 015861 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVK 55 (399)
Q Consensus 5 ~~Cryf~~G~C~~G~~C~fsHd~~~~~~~vCr~f~~G~C~~G~~C~y~H~~ 55 (399)
+.|+|+. .|++ ..|.|.|.. ...|||+. .|.+ ..|.|.|..
T Consensus 32 ~~Cr~g~--~C~~-~~C~f~HP~----~~~Crf~~--~C~n-~~C~F~Hp~ 72 (80)
T 2lhn_A 32 IMCREGA--NCTR-IDCLFGHPI----NEDCRFGV--NCKN-IYCLFRHPP 72 (80)
Confidence 3677764 5776 779999952 35799875 5876 899999953
No 100
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.98 E-value=5.7 Score=31.90 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=44.8
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcce
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~ 260 (399)
.+....|-||-|.|--.. ....|..-..|+-.-|..|..-=|+.-. .+||+|.+.+..
T Consensus 13 ~~~~qiCqiCGD~VG~~~--~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCktrYkr 70 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTV--EGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKR 70 (93)
T ss_dssp CCSSCBCSSSCCBCCBCS--SSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCC
T ss_pred ccCCCccccccCccccCC--CCCEEEeeeccCChhhHHHHHHHHhccC----------ccccccCCcccc
Confidence 345578999999987654 3558888889999999999976554332 489999998864
No 101
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.81 E-value=1.4 Score=35.74 Aligned_cols=44 Identities=32% Similarity=0.638 Sum_probs=34.9
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~ 259 (399)
.-|-.|+-. .| |++.-.+|-.|+.|+..-.+.++ .||+|..+.-
T Consensus 29 ~nCKsCWf~--~k--------~LV~C~dHYLCl~CLtlmL~~Sd-----------rCpIC~~pLP 72 (99)
T 2ko5_A 29 QFCKSCWFE--NK--------GLVECNNHYLCLNCLTLLLSVSN-----------RCPICKMPLP 72 (99)
T ss_dssp CCCCSSCSC--CS--------SEEECSSCEEEHHHHHHTCSSSS-----------EETTTTEECC
T ss_pred ccChhhccc--cC--------CeeeecchhhHHHHHHHHHhhcc-----------CCcccCCcCC
Confidence 358899875 22 78888899999999999887654 7999987653
No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=50.27 E-value=16 Score=31.06 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=31.8
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHH------HHhhC-CCCCCccCcccccCCCCCCC
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN------WRSSS-PTSGMDVNTALRACPICRKL 257 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~------W~~~~-~~~~~~~~~~~~~CP~CR~~ 257 (399)
..+..|.||-+- ..- -.=.+|-.+||..||.. +.+.. ... .-.|+.|+-.
T Consensus 55 g~~~~C~vC~dG--------G~L-lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~-------~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG--------GNL-ICCDFCHNAFCKKCILRNLGRRELSTIMDENN-------QWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC--------SEE-EECSSSSCEEEHHHHHHHTCHHHHHHHTCTTS-------CCCCTTTCCG
T ss_pred CCCCcCeecCCC--------Cee-EecCCCchhhhHHHhCCCcchhHHHHhccCCC-------CeEcCCcCCH
Confidence 345679999985 011 12267999999999975 33332 111 2479999653
No 103
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=45.57 E-value=4.4 Score=37.74 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=0.0
Q ss_pred CCccCchhccCCCCCCCCCcccCCCC
Q 015861 130 DRSICSFAAAGNCPRGEKCPHIHGDT 155 (399)
Q Consensus 130 ~~~~C~f~~~G~C~~G~~C~y~Hg~~ 155 (399)
+.+.|||.. .|.||.+|.|.|.+-
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCcc
Confidence 468899976 499999999999764
No 104
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=45.16 E-value=2.1 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.868 Sum_probs=14.7
Q ss_pred CCCCcccHHHHHHHHh
Q 015861 220 ECDHPFCISCIRNWRS 235 (399)
Q Consensus 220 ~C~H~FC~~CI~~W~~ 235 (399)
+|+|.||+.|-..|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999999975
No 105
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=41.65 E-value=17 Score=27.04 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=34.0
Q ss_pred cCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s 258 (399)
..+..|.||.+. . ..-+=..|...|++.|+.-....... ..-.||.|+...
T Consensus 10 ~~~~~C~vC~~~--~-------~ll~Cd~C~~~~H~~Cl~P~l~~~P~-------g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG--T-------DVLRCTHCAAAFHWRCHFPAGTSRPG-------TGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC--T-------TCEECSSSCCEECHHHHCTTTCCCCS-------SSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC--C-------eEEECCCCCCceecccCCCccCcCCC-------CCEECccccCCC
Confidence 445679999763 1 13455679999999999765543321 124799998653
No 106
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=38.73 E-value=8.3 Score=31.28 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=25.8
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHH
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (399)
...+..|.||.+. -+. ..+..=..|...|.+.|+.-+.
T Consensus 4 ~~~~~~C~~C~~~-g~~-----~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSP-GDL-----LDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCC-CCT-----TTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCCcCCCCC-CCC-----cCCeECCCCCCCcChHHhCCcc
Confidence 4567899999885 110 1123336899999999997654
No 107
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=33.10 E-value=21 Score=26.32 Aligned_cols=43 Identities=23% Similarity=0.634 Sum_probs=27.8
Q ss_pred ccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCC
Q 015861 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (399)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (399)
..|--|...+.++. +| .=+.|.+.||++|=.=--. +...||-|
T Consensus 16 ~~C~~C~~~~~~~~-----~y-~C~~C~~~FC~dCD~fiHe-----------~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-----VY-VCAVCQNVFCVDCDVFVHD-----------SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-----EE-CCTTTTCCBCHHHHHTTTT-----------TSCSSSTT
T ss_pred CcccccCcccCCCc-----cE-ECCccCcCcccchhHHHHh-----------hccCCcCC
Confidence 45888888764321 24 3567999999999432221 23579988
No 108
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=31.68 E-value=95 Score=34.70 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=51.6
Q ss_pred HhCcCcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcc--eeecCcc
Q 015861 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVI 266 (399)
Q Consensus 189 ~~~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~--~viPs~~ 266 (399)
....++..|+|=++. +..| .|+++=+++|=...|.+|.... .+||.=|.+.. -+||+.
T Consensus 886 ~~iP~~F~cPIs~~l-M~DP-------VilpsG~~TydR~~I~~wl~~~-----------~tdP~Tr~~L~~~~liPN~- 945 (968)
T 3m62_A 886 GDVPDEFLDPLMYTI-MKDP-------VILPASKMNIDRSTIKAHLLSD-----------STDPFNRMPLKLEDVTPNE- 945 (968)
T ss_dssp CCSCGGGBCTTTCSB-CSSE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCGGGCEECH-
T ss_pred cCCcHHhCCcchhhH-HhCC-------eEcCCCCEEECHHHHHHHHhcC-----------CCCCCCCCCCCcccccccH-
Confidence 345667889999996 6667 6776334799999999999753 37999998765 366663
Q ss_pred cccCchhHHHHHHHHHhhc
Q 015861 267 WYYTPEEKQEIIDSYKSKL 285 (399)
Q Consensus 267 wv~~~~eK~~li~~yk~~~ 285 (399)
+-+.+|+.|.+.-
T Consensus 946 ------~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 946 ------ELRQKILCFKKQK 958 (968)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHH
Confidence 3456777776543
No 109
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.47 E-value=35 Score=28.95 Aligned_cols=67 Identities=15% Similarity=0.395 Sum_probs=39.3
Q ss_pred cCccccccccccc-ccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCcccccC
Q 015861 192 SQEIECSVCLDRV-LSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (399)
Q Consensus 192 s~d~~C~ICle~v-~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~~ 270 (399)
..+..|.||...+ +-.. +=.+=..|.|.+|-+|-..=...+ ++..-.|=+|++.-...+-+..|+.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~-----~g~~C~~C~~~VC~~C~~~~~~~~-------~~~~W~C~vC~k~rel~~kSG~Wf~~ 120 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGS-----ASVVCEDCKKNVCTKCGVETSNNR-------PHPVWLCKICLEQREVWKRSGAWFFK 120 (134)
T ss_dssp CSSSBCSSSCCBCSTTSC-----CEEECTTTCCEEETTSEEECCCSS-------SSCCEEEHHHHHHHHHHHHTSHHHHT
T ss_pred CCCccccccCCCcccccC-----CCCCCCCCCcccccccCCccCCCC-------CccceechhhHHHHHHHHhhhHHHHh
Confidence 4567899999985 2211 113445688888888843211111 12334688888776666666666543
No 110
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.36 E-value=5.3 Score=31.17 Aligned_cols=19 Identities=32% Similarity=1.162 Sum_probs=15.5
Q ss_pred CCCCCcccHHHHHHHHhhC
Q 015861 219 SECDHPFCISCIRNWRSSS 237 (399)
Q Consensus 219 ~~C~H~FC~~CI~~W~~~~ 237 (399)
+.|++.||+.|-..|..++
T Consensus 47 ~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 47 PQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp TTTCCEECSSSCSBCCTTT
T ss_pred CCCCCccccccCCchhhcC
Confidence 4699999999999995544
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.35 E-value=85 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=23.9
Q ss_pred CcCcccccccccccccCCcccccceeecCCCCCcccHHHHHH
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~ 232 (399)
...+..|.||.+- .. .-.-..|--+||+.||..
T Consensus 60 Dg~~d~C~vC~~G--------G~-LlcCD~Cpr~Fh~~Cl~p 92 (142)
T 2lbm_A 60 DGMDEQCRWCAEG--------GN-LICCDFCHNAFCKKCILR 92 (142)
T ss_dssp TSCBCSCSSSCCC--------SS-EEECSSSCCEEEHHHHHH
T ss_pred CCCCCeecccCCC--------Cc-EEeCCCCCCeeeHhhcCC
Confidence 3456789999985 11 224457889999999974
No 112
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.10 E-value=68 Score=25.29 Aligned_cols=40 Identities=25% Similarity=0.553 Sum_probs=28.3
Q ss_pred cCcccccccccccccCCcccccceeecC-CCCCcccHHHHHHHHhhC
Q 015861 192 SQEIECSVCLDRVLSKPTAAERKFGLLS-ECDHPFCISCIRNWRSSS 237 (399)
Q Consensus 192 s~d~~C~ICle~v~~k~~~~~~~fgil~-~C~H~FC~~CI~~W~~~~ 237 (399)
+.-+.|.+|-|.+.+ ..|..-+ .=.|.||+-|-|...+..
T Consensus 13 ~a~l~CtlC~erLEd------tHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLED------THFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSS------TTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhcc------CceeeCCCccCCeeeccccHHHHHhc
Confidence 455789999998543 3555433 247999999999877653
No 113
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.24 E-value=37 Score=29.85 Aligned_cols=68 Identities=13% Similarity=0.395 Sum_probs=40.3
Q ss_pred CcCcccccccccccccCCcccccceeecC--CCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCc--ceeecCcc
Q 015861 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS--ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS--YFVIPSVI 266 (399)
Q Consensus 191 ~s~d~~C~ICle~v~~k~~~~~~~fgil~--~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s--~~viPs~~ 266 (399)
...+..|.||-+- . ..-+=. +|...||..||..+........+ .....-.|=+|.-.. ..+-+-.-
T Consensus 76 DG~~~yC~wC~~G--------g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i-~~~d~W~Cy~C~P~~l~~ll~~R~d 145 (159)
T 3a1b_A 76 DGYQSYCTICCGG--------R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAA-IKEDPWNCYMCGHKGTYGLLRRRED 145 (159)
T ss_dssp TSSBSSCTTTSCC--------S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHH-HTSSSCCCTTTCSSCEETTEEBCTT
T ss_pred CCCcceeeEecCC--------C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHH-hccCCCEEEecCCccHHHHhhhhhh
Confidence 3456789999985 1 111222 58899999999988765321100 011234699998544 24556666
Q ss_pred cc
Q 015861 267 WY 268 (399)
Q Consensus 267 wv 268 (399)
|.
T Consensus 146 w~ 147 (159)
T 3a1b_A 146 WP 147 (159)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 114
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.17 E-value=35 Score=29.68 Aligned_cols=63 Identities=25% Similarity=0.427 Sum_probs=41.8
Q ss_pred CcccccccccccccCCcccccceeecCCCCCcccHHHHHHHHhhCCCCCCccCcccccCCCCCCCcceeecCccccc
Q 015861 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (399)
Q Consensus 193 ~d~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~s~~viPs~~wv~ 269 (399)
.+..|.||...+--- ..+..+=..|.|.+|-+|=. |... ...-.|=+|+..-...+-+..|+.
T Consensus 67 ~~~~C~~C~~~fg~l----~~~g~~C~~C~~~VC~~C~~-~~~~---------~~~W~C~vC~k~rel~~kSGeWf~ 129 (153)
T 2zet_C 67 NETHCARCLQPYRLL----LNSRRQCLECSLFVCKSCSH-AHPE---------EQGWLCDPCHLARVVKIGSLEWYY 129 (153)
T ss_dssp GGTBCTTTCCBGGGC----SSCCEECTTTCCEECGGGEE-CCSS---------SSSCEEHHHHHHHHHHHHHCHHHH
T ss_pred CCccchhhcCccccc----cCCCCcCCCCCchhhccccc-ccCC---------CCcEeeHHHHHHHHHHHhccHHHH
Confidence 578999999973110 11224556799999999962 3321 123468888888777777777865
Done!