BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015862
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 621 bits (1602), Expect = e-178, Method: Compositional matrix adjust.
Identities = 286/363 (78%), Positives = 325/363 (89%)
Query: 30 ILFLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
+ LTPYKMG FNLSHRVVLAPLTRQRSY NVPQPHA +YYSQRTT GGFLI EATGVS+
Sbjct: 10 VPLLTPYKMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGVSD 69
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
TAQG +TP IWTKE VEAWKPIVDAVHAKGGIFFCQI HVGRVSN +QPNG+APISC+
Sbjct: 70 TAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGKAPISCS 129
Query: 150 DKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYL 209
DKPL PQIR+NG+D A FTPPRRL +EIP IVNDFRLAARNA+EAGFDGVE+HGA+GYL
Sbjct: 130 DKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYL 189
Query: 210 IDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269
IDQF+KD VNDRTD+YGGSL+NRC+F LEIV+AV+ EIG DRVGIRLSPFA+YMESGD+N
Sbjct: 190 IDQFMKDTVNDRTDEYGGSLQNRCKFPLEIVDAVAKEIGPDRVGIRLSPFADYMESGDTN 249
Query: 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDRE 329
P ALGLYMAESLNKYGILYCH++E RMKT E CPH+L+PMRKAFKGTF+ AGG+ RE
Sbjct: 250 PGALGLYMAESLNKYGILYCHVIEARMKTMGEVHACPHTLMPMRKAFKGTFISAGGFTRE 309
Query: 330 DGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYTDYPFLN 389
DGN+A+++GR DLV YGR FLANPDLP+RF+++APLNKY+R TFYTSDPVVGYTDYPFL
Sbjct: 310 DGNEAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLE 369
Query: 390 TSS 392
+++
Sbjct: 370 STA 372
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
Length = 376
Score = 616 bits (1589), Expect = e-177, Method: Compositional matrix adjust.
Identities = 283/363 (77%), Positives = 322/363 (88%)
Query: 30 ILFLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
I ++P KMG F L HRVVLAPLTRQRSY +PQPHAIL+YSQR+T GG LI EAT +S
Sbjct: 14 IPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISE 73
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
T G + P IWTKEQVEAWKPIVDAVHAKGGIFFCQI HVGRVSN+D+QPNG+ PISCT
Sbjct: 74 TGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCT 133
Query: 150 DKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYL 209
D+ LTPQI +NG+D+A FT PRRL TDEIPQIVN+FR+AARNAIEAGFDGVE+HGAHGYL
Sbjct: 134 DRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYL 193
Query: 210 IDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269
IDQF+KDQVNDR+D+YGGSLENRCRFALEIVEAV+NEIG+DRVGIR+SPFA+Y E+GD+N
Sbjct: 194 IDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN 253
Query: 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDRE 329
P ALGLYM ESLNKY + YCH+VEPRMKT EK EC SL+PMRKA+KGTF+VAGGYDRE
Sbjct: 254 PTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDRE 313
Query: 330 DGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYTDYPFLN 389
DGN+A+ E RADLV YGRLF++NPDLP+RFELNAPLNKYNR+TFYTSDP+VGYTDYPFL
Sbjct: 314 DGNRALIEDRADLVAYGRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 373
Query: 390 TSS 392
T +
Sbjct: 374 TMT 376
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/376 (56%), Positives = 267/376 (71%), Gaps = 22/376 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA 91
+PYKMG FNLSHRVVLAP+TR R+ NN+PQ YY QR T GGFLI E T +S T+
Sbjct: 18 LFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTS 77
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDK 151
G P+ P I+TKEQV WK IVD VHAKG + FCQ+ HVGR S+ YQP G APIS T+K
Sbjct: 78 AGYPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEK 137
Query: 152 PLTPQIRANGVDVAQ--FTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYL 209
P++ + R D + PR + T EI Q+V D+R +A NAIEAGFDG+E+HGAHGYL
Sbjct: 138 PISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYL 197
Query: 210 IDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269
IDQFLKD +NDRTD+YGGSL NRC+F ++V+AV + IGADRVG+R+SP +Y+++ DSN
Sbjct: 198 IDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDYLDAMDSN 257
Query: 270 PEALGLYMAESLNKY------GILYCHMVEP-----------RMKTREEKSECPHSLLPM 312
P +LGL + E LNK + Y H+ +P R+ + EE++ +L
Sbjct: 258 PLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTL--- 314
Query: 313 RKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
R A++GTF+ +GGY RE G +A+A+G ADLV YGRLF++NPDL R +LNAPLNKYNR+T
Sbjct: 315 RNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKT 374
Query: 373 FYTSDPVVGYTDYPFL 388
FYT DPVVGYTDYPFL
Sbjct: 375 FYTQDPVVGYTDYPFL 390
>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HS6|B Chain B, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HSA|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|2HSA|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|3HGS|A Chain A, Crystal Structure Of Tomato Opr3 In Complex With Phb
pdb|3HGS|B Chain B, Crystal Structure Of Tomato Opr3 In Complex With Phb
Length = 402
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/376 (55%), Positives = 267/376 (71%), Gaps = 22/376 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA 91
+PYKMG FNLSHRVVLAP+TR R+ NN+PQ YY QR T GGFLI E T +S T+
Sbjct: 18 LFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTS 77
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDK 151
G P+ P I+TKEQV WK IVD VHAKG + FCQ+ HVGR S+ YQP G APIS T+K
Sbjct: 78 AGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEK 137
Query: 152 PLTPQIRANGVDVAQ--FTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYL 209
P++ + R D + PR + T EI Q+V D+R +A NAIEAGFDG+E+HGAHGYL
Sbjct: 138 PISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYL 197
Query: 210 IDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269
IDQFLKD +NDRTD+YGGSL NRC+F ++V+AV + IGADRVG+R+SP +++++ DSN
Sbjct: 198 IDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSN 257
Query: 270 PEALGLYMAESLNKY------GILYCHMVEP-----------RMKTREEKSECPHSLLPM 312
P +LGL + E LNK + Y H+ +P R+ + EE++ +L
Sbjct: 258 PLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTL--- 314
Query: 313 RKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
R A++GTF+ +GGY RE G +A+A+G ADLV YGRLF++NPDL R +LNAPLNKYNR+T
Sbjct: 315 RNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKT 374
Query: 373 FYTSDPVVGYTDYPFL 388
FYT DPVVGYTDYPFL
Sbjct: 375 FYTQDPVVGYTDYPFL 390
>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
pdb|2HS8|B Chain B, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
Length = 402
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/376 (55%), Positives = 267/376 (71%), Gaps = 22/376 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA 91
+PYKMG FNLSHRVVLAP+TR R+ NN+PQ YY QR T GGFLI E T +S T+
Sbjct: 18 LFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTS 77
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDK 151
G P+ P I+TKEQV WK IVD VHAKG + FCQ+ HVGR S+ YQP G APIS T+K
Sbjct: 78 AGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEK 137
Query: 152 PLTPQIRANGVDVAQ--FTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYL 209
P++ + R D + PR + T EI Q+V D+R +A NAIEAGFDG+E+HGAHGYL
Sbjct: 138 PISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYL 197
Query: 210 IDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269
IDQFLKD +NDRTD+YGGSL NRC+F ++V+AV + IGADRVG+R+SP +++++ DSN
Sbjct: 198 IDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSN 257
Query: 270 PEALGLYMAESLNKY------GILYCHMVEP-----------RMKTREEKSECPHSLLPM 312
P +LGL + E LNK + Y H+ +P R+ + EE++ +L
Sbjct: 258 PLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTL--- 314
Query: 313 RKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
R A++GTF+ +GGY RE G +A+A+G ADLV YGRLF++NPDL R +LNAPLNK+NR+T
Sbjct: 315 RNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKFNRKT 374
Query: 373 FYTSDPVVGYTDYPFL 388
FYT DPVVGYTDYPFL
Sbjct: 375 FYTQDPVVGYTDYPFL 390
>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|1Q45|B Chain B, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|2G5W|A Chain A, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2G5W|B Chain B, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2Q3O|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
pdb|2Q3O|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
Length = 391
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/375 (53%), Positives = 263/375 (70%), Gaps = 19/375 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA 91
+ YKMG F+LSHRVVLAP+TR R+ N VP YY+QRTT GGFLI+E T VS +
Sbjct: 12 LFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGS 71
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDK 151
G P+ P I++ EQVEAWK +V+AVHAKGG FCQ+ HVGR S+ YQPNG +PIS T+K
Sbjct: 72 AGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNK 131
Query: 152 PLTPQ----IRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHG 207
P++ + +G V ++ PR L EIP++V D+ L+A NAI AGFDG+E+HGAHG
Sbjct: 132 PISENRWRVLLPDGSHV-KYPKPRALEASEIPRVVEDYCLSALNAIRAGFDGIEIHGAHG 190
Query: 208 YLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGD 267
YLIDQFLKD +NDRTDQYGGS+ NRCRF ++VE V + IGA +VG+R+SP +++++ D
Sbjct: 191 YLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATD 250
Query: 268 SNPEALGLYMAESLNKY------GILYCHMVEPRMKT-------REEKSECPHSLL-PMR 313
S+P +LGL + LNK + Y H+ +PR R+ E L+ +R
Sbjct: 251 SDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLR 310
Query: 314 KAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETF 373
A+ GTF+ +GG+++E G +A+ +G ADLV YGRLF+ANPDL RF+++ LNKYNR+TF
Sbjct: 311 MAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTF 370
Query: 374 YTSDPVVGYTDYPFL 388
YT DPVVGYTDYPFL
Sbjct: 371 YTQDPVVGYTDYPFL 385
>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With
Tetrahydronad
Length = 377
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 165/370 (44%), Positives = 218/370 (58%), Gaps = 22/370 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA 91
TP ++G+ +L +RV++APLTR R+ ++VP +YY QR + G +I+EAT +S TA
Sbjct: 11 LFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAG-LIISEATNISPTA 69
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDK 151
+G TP IWT Q WK +V+AVHAKGG Q+ HVGRVS+ QP+GQ P++ +
Sbjct: 70 RGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPS-- 127
Query: 152 PLTPQIRANGVD--------VAQFTP---PRRLRTDEIPQIVNDFRLAARNAIEAGFDGV 200
++A G + A P PR L TDEIP IV D+R AA+ A AGFD V
Sbjct: 128 ----ALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDMV 183
Query: 201 ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260
E+H A+ L +QFL N RTDQYGGS+ENR RF LE+V+AV+ G +RVGIRL+PF
Sbjct: 184 EVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 243
Query: 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLP-MRKAFKGT 319
D PEA+ Y+A L++ G+ Y H EP + P MR+ FKG
Sbjct: 244 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD--ITYPEGFREQMRQRFKGG 301
Query: 320 FLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPV 379
+ G YD + + AD V +GR F+ANPDLP RF L A LN+ + TFY
Sbjct: 302 LIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFY-GGAE 360
Query: 380 VGYTDYPFLN 389
VGYTDYPFL+
Sbjct: 361 VGYTDYPFLD 370
>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex
With Tetrahydronad
Length = 377
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 165/370 (44%), Positives = 217/370 (58%), Gaps = 22/370 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA 91
TP ++G+ +L +RV++APLTR R+ ++VP +YY QR + G +I+EAT +S TA
Sbjct: 11 LFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAG-LIISEATNISPTA 69
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDK 151
+G TP IWT Q WK +V+AVHAKGG Q+ HVGRVS+ QP+GQ P++ +
Sbjct: 70 RGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPS-- 127
Query: 152 PLTPQIRANGVD--------VAQFTP---PRRLRTDEIPQIVNDFRLAARNAIEAGFDGV 200
++A G + A P PR L TDEIP IV D+R AA+ A AGFD V
Sbjct: 128 ----ALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDMV 183
Query: 201 ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260
E+H A L +QFL N RTDQYGGS+ENR RF LE+V+AV+ G +RVGIRL+PF
Sbjct: 184 EVHAAAACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 243
Query: 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLP-MRKAFKGT 319
D PEA+ Y+A L++ G+ Y H EP + P MR+ FKG
Sbjct: 244 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD--ITYPEGFREQMRQRFKGG 301
Query: 320 FLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPV 379
+ G YD + + AD V +GR F+ANPDLP RF L A LN+ + TFY
Sbjct: 302 LIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFY-GGAE 360
Query: 380 VGYTDYPFLN 389
VGYTDYPFL+
Sbjct: 361 VGYTDYPFLD 370
>pdb|1GWJ|A Chain A, Morphinone Reductase
Length = 377
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 217/370 (58%), Gaps = 22/370 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA 91
TP ++G+ +L +RV++APLTR R+ ++VP +YY QR + G +I+EAT +S TA
Sbjct: 11 LFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAG-LIISEATNISPTA 69
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDK 151
+G TP IWT Q WK +V+AVHAKGG Q+ HVGRVS+ QP+GQ P++ +
Sbjct: 70 RGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPS-- 127
Query: 152 PLTPQIRANGVD--------VAQFTP---PRRLRTDEIPQIVNDFRLAARNAIEAGFDGV 200
++A G + A P PR L TD IP IV D+R AA+ A AGFD V
Sbjct: 128 ----ALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYRQAAQRAKRAGFDMV 183
Query: 201 ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260
E+H A+ L +QFL N RTDQYGGS+ENR RF LE+V+AV+ G +RVGIRL+PF
Sbjct: 184 EVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 243
Query: 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLP-MRKAFKGT 319
D PEA+ Y+A L++ G+ Y H EP + P MR+ FKG
Sbjct: 244 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD--ITYPEGFREQMRQRFKGG 301
Query: 320 FLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPV 379
+ G YD + + AD V +GR F+ANPDLP RF L A LN+ + TFY
Sbjct: 302 LIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFY-GGAE 360
Query: 380 VGYTDYPFLN 389
VGYTDYPFL+
Sbjct: 361 VGYTDYPFLD 370
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 281 bits (719), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 123
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 124 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 180
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 181 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 241 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 298
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 299 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 357
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 358 YTDYPSL 364
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 281 bits (718), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 281 bits (718), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 281 bits (718), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLYHTGRISHSSIQPGGQAPVSAS 123
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 124 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 180
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 181 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 241 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 298
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 299 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 357
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 358 YTDYPSL 364
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLFHTGRISHSSIQPGGQAPVSAS 123
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 124 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 180
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 181 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 241 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 298
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 299 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 357
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 358 YTDYPSL 364
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+F+ G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFFGGG-AEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APL+R RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLSRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 123
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 124 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 180
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHG+L+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 181 HSAHGFLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 241 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 298
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 299 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 357
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 358 YTDYPSL 364
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+F + G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESF-SGGGAEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 203/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 HSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+F G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESF-AGGGAEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
+ AHGYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 NSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 204/367 (55%), Gaps = 17/367 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
TP K+G +RV +APLTR RS ++P P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
A+G P + + EQ+ AWK I VHA+ G Q+ H GR+S+ QP GQAP+S +
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 150 DKPLTPQIR-------ANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
L R N + V T PR L DEIP IVNDFR A NA EAGFD VEL
Sbjct: 125 --ALNANTRTSLRDENGNAIRV-DTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVEL 181
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
H A+GYL+ QFL N RTDQYGGS+ENR R LE+V+AV NE ADR+GIR+SP +
Sbjct: 182 HSANGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 241
Query: 263 MESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFL 321
+ N EA LY+ E L K GI Y HM E + + SE +R+ F G +
Sbjct: 242 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVII 299
Query: 322 VAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVG 381
AG Y E I +G D V +GR ++ANPDL R + A LN E+FY G
Sbjct: 300 GAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEG 358
Query: 382 YTDYPFL 388
YTDYP L
Sbjct: 359 YTDYPSL 365
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 154/364 (42%), Positives = 219/364 (60%), Gaps = 17/364 (4%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRS-YNNVPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
P K+G+ L +R+++APLTR R+ VP YY QR + G +++EAT VS
Sbjct: 4 LFDPIKLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRAS-AGLILSEATSVSPM 62
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
G P+TP IW EQV W + AVHA GG F Q+ HVGR+S+ Y NG+ P++ +
Sbjct: 63 GVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYL-NGELPVAPS- 120
Query: 151 KPLTPQIRANGV-DVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYL 209
+ P+ + V ++ + PR L T+EI IV +R A NA AGFDGVE+HGA+GYL
Sbjct: 121 -AIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYL 179
Query: 210 IDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269
+DQFL+ N RTD+YGGSLENR R LE+ +A GA RVG+ L+P A+ + GD++
Sbjct: 180 LDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDAD 239
Query: 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPM-RKAFKGTFLVAGGYDR 328
Y+A L K GI + + +RE +++ S+ P+ ++AF G ++V +D+
Sbjct: 240 RAETFTYVARELGKRGIAF-------ICSREREAD--DSIGPLIKEAFGGPYIVNERFDK 290
Query: 329 EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYTDYPFL 388
N A+A G+AD V +G F+ANPDLP R +APLN+ + ETFY P VGY DYP L
Sbjct: 291 ASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHPETFYGKGP-VGYIDYPRL 349
Query: 389 NTSS 392
++
Sbjct: 350 KLAA 353
>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
pdb|3GKA|B Chain B, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
Length = 361
Score = 274 bits (701), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/370 (41%), Positives = 215/370 (58%), Gaps = 29/370 (7%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAIL--YYSQRTTKGGFLIAEATGVSN 89
P +G+ L++R+++APLTR R+ + P+A++ YY++R + G +I+EAT V+
Sbjct: 12 LFDPLTIGDLTLANRIIMAPLTRARA-GDTRTPNALMARYYAERASAG-LIISEATSVTP 69
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCT 149
G +TP IW+ EQV+ W+ + DAVHA GG F Q+ HVGRVS+ P+
Sbjct: 70 QGVGYASTPGIWSPEQVDGWRLVTDAVHAAGGRIFLQLWHVGRVSD---------PVFLD 120
Query: 150 DK-PLTPQIRANGVDVAQFTP------PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202
P+ P A G V+ P PR L DEIP +V FR A NA AGFDGVE+
Sbjct: 121 GALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENARAAGFDGVEV 180
Query: 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262
HGA+GYL+DQFL+D N RTD YGGS+ENR R LE+V+A + A RVG+ L+P +
Sbjct: 181 HGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDA 240
Query: 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV 322
GDS+P A ++A L + I + E + ++ AF G F+V
Sbjct: 241 HTMGDSDPAATFGHVARELGRRRIAFLFARESFGGDAIGQQ--------LKAAFGGPFIV 292
Query: 323 AGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGY 382
+ + A+ G+AD V +G+LF+ANPDLPRRF+LNAPLN+ N TFY VGY
Sbjct: 293 NENFTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAATFYAQGE-VGY 351
Query: 383 TDYPFLNTSS 392
TDYP L +++
Sbjct: 352 TDYPALESAA 361
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 216/363 (59%), Gaps = 14/363 (3%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
P +G L +R+V+ P+TR R+ +V +YY+QR + G +++E T +S
Sbjct: 5 LFQPITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRAS-AGLIVSEGTQISP 63
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISC- 148
TA+G TP I+T EQ+ W+ + +AVHAKG F Q+ HVGRV++ D +GQ PIS
Sbjct: 64 TAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRVTHPD-NIDGQQPISSS 122
Query: 149 TDKPLTPQIRA-NGVDVAQFTP---PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHG 204
T K ++ NG D F PR + +I Q++ D+R AA NA+EAGFDG+ELH
Sbjct: 123 TLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALNAMEAGFDGIELHA 182
Query: 205 AHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264
A+GYLI+QF+ + N+R+D+YGGSLENR RF E+V A+ + IGA+RVG+RL+P
Sbjct: 183 ANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNG 242
Query: 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSL-LPMRKAFKGTFLVA 323
+ D++P A LNK+ I+Y H+ E ++ + P S +R+A++G + A
Sbjct: 243 TVDADPILTYTAAAALLNKHRIVYLHIAEVDW---DDAPDTPVSFKRALREAYQGVLIYA 299
Query: 324 GGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYT 383
G Y+ E +AI +G AD++ +GR F+ANPDLP R PL ++ T + G T
Sbjct: 300 GRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPATLFGGGE-KGLT 358
Query: 384 DYP 386
DYP
Sbjct: 359 DYP 361
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 205/359 (57%), Gaps = 6/359 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY-NNVPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
P + G F +R+ +APLTR R+ ++VP YY+QR + G +I+EATG+S
Sbjct: 4 LFDPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRAS-AGLIISEATGISQE 62
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
G P P IW+ QVEAW PI AVH GG+ F Q+ H+GR+ + +G P++ +
Sbjct: 63 GLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMVPSNV--SGMQPVAPSA 120
Query: 151 KPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLI 210
P + + R LR DEIP++++D+ AAR+A++AGFDGV++H A+GYLI
Sbjct: 121 S-QAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAANGYLI 179
Query: 211 DQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNP 270
D+F++D N R D+YGG++ENR R ++ E V IG +R +RLSP + DS+P
Sbjct: 180 DEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHP 239
Query: 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDRED 330
E + + A+ L+ I + M E + K++ P +RK FK ++ Y E
Sbjct: 240 EQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQDYTFET 299
Query: 331 GNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYTDYPFLN 389
A+ G AD + +GR F+ NPDLPRRF APL K ET+YT P GYTDYP L
Sbjct: 300 AQAALDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWYTQTP-KGYTDYPLLG 357
>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye
pdb|3ATY|B Chain B, Crystal Structure Of Tcoye
pdb|3ATZ|A Chain A, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|B Chain B, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|C Chain C, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|D Chain D, Crystal Structure Of Tcoye With Phba
Length = 379
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 203/377 (53%), Gaps = 24/377 (6%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKGGFLIAEATGVSN 89
L P K+G + L +R+++APLTR ++ ++VP+ ++L Y + G +IAEAT V
Sbjct: 7 LLRPLKLGRYTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRASAGLIIAEATMVQP 66
Query: 90 TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRV---------SNRDYQP 140
G P I++ Q+E W+ IVDAVH KGG+ F Q+ H GR S D P
Sbjct: 67 NYTGFLTEPGIYSDAQIEEWRKIVDAVHKKGGLIFLQLIHAGRAGIPEKILQQSKSDQDP 126
Query: 141 NGQAPISCTDKPL----TPQIRANGVDVAQFTPPRRLRTDEIPQ-IVNDFRLAARNAI-E 194
++ + P+ P A + + P L DE+ I+ F A+NAI +
Sbjct: 127 LAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEELTDDEVRDGIIPLFVEGAKNAIFK 186
Query: 195 AGFDGVELHGAHGYLIDQFLKDQVNDR-TDQYGG-SLENRCRFALEIVEAVSNEIGADRV 252
AGFDGVE+HGA+GYL+D F ++ N R + Y G +++ RC+ ++ ++V + +G+DRV
Sbjct: 187 AGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRV 246
Query: 253 GIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPM 312
G+R+SP DSNPEAL ++ + + + Y H + M + + + +
Sbjct: 247 GLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQ----QIGDVVAWV 302
Query: 313 RKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
R ++ G + YD E+ ++ I EG+ D V +G F+ANPDL R + N PLN+ ET
Sbjct: 303 RGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPLNEPRPET 362
Query: 373 FYTSDPVVGYTDYPFLN 389
+YT VGY DYP N
Sbjct: 363 YYTRT-AVGYNDYPTYN 378
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 201/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q++ +G + D +G
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLQVLGWAAFPDNLARDGLRYD 136
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE+H A+
Sbjct: 137 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 315 AFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 316 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 374
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 375 FYQMS-AHGYIDYP 387
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q+ +G + D +G
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 135
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE++ AH
Sbjct: 136 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEINSAH 194
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 315 AFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 315 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 373
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 374 FYQMS-AHGYIDYP 386
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q+ +G + D +G
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYD 136
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE+H A+
Sbjct: 137 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 315 AFKGTFLVAGGYDR--EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 316 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 374
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 375 FYQMS-AHGYIDYP 387
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q+ +G + D +G
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 136
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE+H A+
Sbjct: 137 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 315 AFKGTFLVAGGYDR--EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 316 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 374
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 375 FYQMS-AHGYIDYP 387
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q+ +G + D +G
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLLVLGWAAFPDNLARDGLRYD 136
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE+H A+
Sbjct: 137 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 315 AFKGTFLVAGGYDR--EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 316 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 374
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 375 FYQMS-AHGYIDYP 387
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q+ +G + D +G
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFPDNLARDGLRYD 136
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE+H A+
Sbjct: 137 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 315 AFKGTFLVAGGYDR--EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 316 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 374
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 375 FYQMS-AHGYIDYP 387
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q+ +G + D +G
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFPDNLARDGLRYD 135
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE+H A+
Sbjct: 136 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 194
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 315 AFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 315 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 373
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 374 FYQMS-AHGYIDYP 386
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + + +G + D +G
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVNLWVLGWAAFPDNLARDGLRYD 135
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE+H A+
Sbjct: 136 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 194
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 315 AFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 315 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 373
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 374 FYQMS-AHGYIDYP 386
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 200/374 (53%), Gaps = 22/374 (5%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYN--NVP-QPHAILYYSQRTTK-GGFLIAEATGV 87
P K+GN L HR V+ PLTR R+ + N+P + A+ YY+QR + G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD-YQPNGQAPI 146
S A G N P +W++EQ+ W I +A+H K + Q+ +G + D +G
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 135
Query: 147 SCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAH 206
S +D + A P L DEI Q + ++ AA+N+I AG DGVE++ A+
Sbjct: 136 SASDNVFMDAEQEAKAKKAN-NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEINSAN 194
Query: 207 GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--NYME 264
GYL++QFL N RTD+YGGS+ENR RF LE+V+A+ IG ++VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 265 SG-DSNPEALGLYMAESLNKYG-----ILYCHMVEPRMK----TREEKSECPHSLLPMRK 314
G ++ A Y+A L K + + H+VEPR+ T E S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 315 AFKGTFLVAGGYDR--EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRET 372
+KG + AG + E + + + R L+ YGR F++NPDL R E PLNKY+R+T
Sbjct: 315 IWKGPVIRAGNFALHPEVVREEVKDKRT-LIGYGRFFISNPDLVDRLEKGLPLNKYDRDT 373
Query: 373 FYTSDPVVGYTDYP 386
FY GY DYP
Sbjct: 374 FYQMS-AHGYIDYP 386
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 192/369 (52%), Gaps = 23/369 (6%)
Query: 37 KMGNFNLSHRVVLAPLTRQRSY-NNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGN 94
K+GN L ++V P TR R+ ++ P + YY R+T G LI EAT VS A G
Sbjct: 19 KVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
Query: 95 PNT-PSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSN-RDYQPNGQAPISCTDKP 152
P IWT + +AWK I D VHA G Q+ +GRV++ + G P+S +
Sbjct: 79 EGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATY 138
Query: 153 LTPQIRANGVDVAQFTPPRRLRTDEIPQIVND-FRLAARNAIEAGFDGVELHGAHGYLID 211
+ + V P R L T E+ +V + + AA+ A++AGFD +ELH AHGYL+D
Sbjct: 139 ESDAAKEAAEAVGN--PVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLD 196
Query: 212 QFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM----ESGD 267
QFL+ N RTD+YGGS+ENR R LE+++ +S +GAD++GIR+SP+A +
Sbjct: 197 QFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDT 256
Query: 268 SNPEALGLYMAESLNK-----YGILYCHMVEPRMKTREEKSECPHSLLP--MRKAFKGTF 320
+P Y+ L + GI Y +VEPR+ + SE + + K +KG
Sbjct: 257 VHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVI 316
Query: 321 LVAGGYDREDGN-KAIAEGRAD---LVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTS 376
L AG Y + K + E AD LV + R F +NP+L + L Y+R TFY S
Sbjct: 317 LKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFY-S 375
Query: 377 DPVVGYTDY 385
D GY +
Sbjct: 376 DNNYGYNTF 384
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 192/369 (52%), Gaps = 23/369 (6%)
Query: 37 KMGNFNLSHRVVLAPLTRQRSY-NNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGN 94
K+GN L ++V P TR R+ ++ P + YY R+T G LI EAT VS A G
Sbjct: 19 KVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
Query: 95 PNT-PSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSN-RDYQPNGQAPISCTDKP 152
P IWT + +AWK I D VHA G Q+ +GRV++ + G P+S +
Sbjct: 79 EGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATY 138
Query: 153 LTPQIRANGVDVAQFTPPRRLRTDEIPQIVND-FRLAARNAIEAGFDGVELHGAHGYLID 211
+ + V P R L T E+ +V + + AA+ A++AGFD +ELH AHGYL+D
Sbjct: 139 ESDAAKEAAEAVGN--PVRALTTQEVKDLVYETYTNAAQKAMDAGFDYIELHAAHGYLLD 196
Query: 212 QFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM----ESGD 267
QFL+ N RTD+YGGS+ENR R LE+++ +S +GAD++GIR+SP+A +
Sbjct: 197 QFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDT 256
Query: 268 SNPEALGLYMAESLNK-----YGILYCHMVEPRMKTREEKSECPHSLLP--MRKAFKGTF 320
+P Y+ L + GI Y +VEPR+ + SE + + K +KG
Sbjct: 257 VHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVI 316
Query: 321 LVAGGYDREDGN-KAIAEGRAD---LVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTS 376
L AG Y + K + E AD LV + R F +NP+L + L Y+R TFY S
Sbjct: 317 LKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFY-S 375
Query: 377 DPVVGYTDY 385
D GY +
Sbjct: 376 DNNYGYNTF 384
>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
Length = 343
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 165/359 (45%), Gaps = 58/359 (16%)
Query: 31 LFLTPYKMGNFNLSHRVVLAPLTR-QRSYNNVPQPHAILYYSQRTTKG-GFLIAEATGVS 88
+ P K+ + + +R++++P+ S + +P I++Y+ R G G ++ EAT V
Sbjct: 3 ILHMPLKIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVE 62
Query: 89 NTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPN-GQAPIS 147
+ + + IW EQV+ K IVD A G + Q+ H GR N Y+ G +PI
Sbjct: 63 SRGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIK 122
Query: 148 CTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHG 207
D+ + PR L +EI IV F AA+ A AG+D VE+H AHG
Sbjct: 123 AGDR---------------YKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHG 167
Query: 208 YLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGIRLSPFANYMESG 266
YLI +FL N R D+YG S+ENR RF +E+++ V ++ + +R+S +YME G
Sbjct: 168 YLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSA-DDYMEGG 226
Query: 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKS--------------ECPHSLLPM 312
+ + M + Y +M++ ++ + S + ++
Sbjct: 227 ------INIDMM-------VEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIK 273
Query: 313 RKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP-----------DLPRRFE 360
++ T V +E + ++ RADLV GR L NP D P+++E
Sbjct: 274 KRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTYTSKEDWPKQYE 332
>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
Length = 337
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 165/359 (45%), Gaps = 58/359 (16%)
Query: 31 LFLTPYKMGNFNLSHRVVLAPLTR-QRSYNNVPQPHAILYYSQRTTKG-GFLIAEATGVS 88
+ P K+ + + +R++++P+ S + +P I++Y+ R G G ++ EAT V
Sbjct: 3 ILHMPLKIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVE 62
Query: 89 NTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPN-GQAPIS 147
+ + + IW EQV+ K IVD A G + Q+ H GR N Y+ G +PI
Sbjct: 63 SRGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIK 122
Query: 148 CTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHG 207
D+ + PR L +EI IV F AA+ A AG+D VE+H AHG
Sbjct: 123 AGDR---------------YKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHG 167
Query: 208 YLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGIRLSPFANYMESG 266
YLI +FL N R D+YG S+ENR RF +E+++ V ++ + +R+S +YME G
Sbjct: 168 YLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSA-DDYMEGG 226
Query: 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKS--------------ECPHSLLPM 312
+ + M + Y +M++ ++ + S + ++
Sbjct: 227 ------INIDMM-------VEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIK 273
Query: 313 RKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP-----------DLPRRFE 360
++ T V +E + ++ RADLV GR L NP D P+++E
Sbjct: 274 KRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTYTSKEDWPKQYE 332
>pdb|3L67|A Chain A, Xenobiotic Reductase A - C25s Variant
pdb|3L68|A Chain A, Xenobiotic Reductase A - C25s Variant With Coumarin
Length = 363
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 3/215 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN-VPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
PY + + L +R+ + P+++ + + + H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMSQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
+ P IW+ +A+ P+V A+ A G + QI H GR ++ + G I+ D
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 151 KPLTPQIRANGVDVAQFTP--PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
I + + P PR + D+I ++ DF AAR A +AGF+ +ELH AHGY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAV 243
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|3N14|A Chain A, Xena - W358a
Length = 363
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN-VPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
PY + + L +R+ + P+ + + + + H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
+ P IW+ +A+ P+V A+ A G + QI H GR ++ + G I+ D
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 151 KPLTPQIRANGVDVAQFTP--PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
I + + P PR + D+I ++ DF AAR A +AGF+ +ELH AHGY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAV 243
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|3L65|A Chain A, Xenobiotic Reductase A - C25a Mutant
pdb|3L66|A Chain A, Xenobiotic Reductase A - C25a Variant With Coumarin
Length = 363
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN-VPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
PY + + L +R+ + P+ + + + + H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMAQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
+ P IW+ +A+ P+V A+ A G + QI H GR ++ + G I+ D
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 151 KPLTPQIRANGVDVAQFTP--PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
I + + P PR + D+I ++ DF AAR A +AGF+ +ELH AHGY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAV 243
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|3L5L|A Chain A, Xenobiotic Reductase A - Oxidized
pdb|3L5M|A Chain A, Xenobiotic Reductase A - Coumarin Bound
pdb|3N19|B Chain B, Xena - Reduced
pdb|3N19|D Chain D, Xena - Reduced
Length = 363
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN-VPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
PY + + L +R+ + P+ + + + + H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
+ P IW+ +A+ P+V A+ A G + QI H GR ++ + G I+ D
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 151 KPLTPQIRANGVDVAQFTP--PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
I + + P PR + D+I ++ DF AAR A +AGF+ +ELH AHGY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAV 243
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|2H8Z|A Chain A, Xenobiotic Reductase A In Complex With 8-Hydroxycoumarin
pdb|2H90|A Chain A, Xenobiotic Reductase A In Complex With Coumarin
Length = 359
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN-VPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
PY + + L +R+ + P+ + + + + H + G L+ EAT V+
Sbjct: 3 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 62
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
+ P IW+ +A+ P+V A+ A G + QI H GR ++ + G I+ D
Sbjct: 63 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 122
Query: 151 KPLTPQIRANGVDVAQFTP--PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
I + + P PR + D+I ++ DF AAR A +AGF+ +ELH AHGY
Sbjct: 123 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 182
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAV 243
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 183 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 217
>pdb|2H8X|A Chain A, Xenobiotic Reductase A-Oxidized
Length = 358
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN-VPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
PY + + L +R+ + P+ + + + + H + G L+ EAT V+
Sbjct: 2 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 61
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
+ P IW+ +A+ P+V A+ A G + QI H GR ++ + G I+ D
Sbjct: 62 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 121
Query: 151 KPLTPQIRANGVDVAQFTP--PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
I + + P PR + D+I ++ DF AAR A +AGF+ +ELH AHGY
Sbjct: 122 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 181
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAV 243
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 182 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 216
>pdb|3N16|A Chain A, Xena - Y183f
Length = 363
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN-VPQPHAILYYSQRTTKGGFLIAEATGVSNT 90
PY + + L +R+ + P+ + + + + H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 91 AQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTD 150
+ P IW+ +A+ P+V A+ A G + QI H GR ++ + G I+ D
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 151 KPLTPQIRANGVDVAQFTP--PRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
I + + P PR + D+I ++ DF AAR A +AGF+ +ELH AHG+
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGF 183
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAV 243
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 152/340 (44%), Gaps = 40/340 (11%)
Query: 31 LFLTPYKMGNFNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGFLIAEATGV 87
+ +PY + L +R+V++P+ V H I Y ++ + G +I EATGV
Sbjct: 4 MLFSPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGV 63
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPIS 147
+ + + IW+ + + + +V V G Q+ H GR S Q P
Sbjct: 64 TPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKS--------QVPGE 115
Query: 148 CTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHG 207
P D + TP + D I + V F+ AR A EAGFD +E+H AHG
Sbjct: 116 IIAPSAVP------FDDSSPTPKEMTKAD-IEETVQAFQNGARRAKEAGFDVIEIHAAHG 168
Query: 208 YLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGD 267
YLI++FL N R D+YGGS ENR RF E+++AV E+ + +R+S + D
Sbjct: 169 YLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAV-REVWDGPLFVRIS-------ASD 220
Query: 268 SNPEALG----LYMAESLNKYGI----LYCHMVEPRMKTREEKSECPHSLLPMRKA---F 316
+P+ L + A+ + + G+ + + P + P + L R+A
Sbjct: 221 YHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPT 280
Query: 317 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLP 356
L+ G+ E+ + GRADLV GR L NP P
Sbjct: 281 GAVGLITSGWQAEE---ILQNGRADLVFLGRELLRNPYWP 317
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 157/339 (46%), Gaps = 39/339 (11%)
Query: 32 FLTPYKMGNFNLSHRVVLAPL-TRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSN- 89
P +G L +RV++ + T Y + + A +Y++R G LI G++
Sbjct: 5 LFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAA-FYAERARHGVALIVSG-GIAPD 62
Query: 90 -TAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISC 148
T G + Q+ + I +AVH +GG QI H GR S YQP+ AP S
Sbjct: 63 LTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYS---YQPHLVAP-SA 118
Query: 149 TDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
P+ + P L +EI Q++++F A+ A EAG+DGVE+ G+ GY
Sbjct: 119 LQAPINRFV------------PHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGY 166
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDS 268
LI++FL + N R+DQ+GG NR RFA+E+V AV +G D + I + +E G +
Sbjct: 167 LINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGT 226
Query: 269 NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-- 326
E + L A+++ G ++ + E + + +P R AF G+
Sbjct: 227 FAETVEL--AQAIEAAG---ATIINTGIGWHEARIPTIATPVP-RGAFSWVTRKLKGHVS 280
Query: 327 ----------DREDGNKAIAEGRADLVVYGRLFLANPDL 355
D + + ++ G AD+V R FLA+ +L
Sbjct: 281 LPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
>pdb|1Z41|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z41|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z42|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z42|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z44|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z44|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z48|A Chain A, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
pdb|1Z48|B Chain B, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
Length = 338
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 144/344 (41%), Gaps = 48/344 (13%)
Query: 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGFLIAEATGVS 88
TP + + L +R+V +P S+ + H Y S+ + G +I EA+ V+
Sbjct: 5 LFTPITIKDXTLKNRIVXSPXCXYSSHEKDGKLTPFHXAHYISRAIGQVGLIIVEASAVN 64
Query: 89 NTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISC 148
+ IW+ E +E + + + V +G Q+ H GR + + + I+
Sbjct: 65 PQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAF 124
Query: 149 TDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGY 208
++ TP +++ + V +F+ AA A EAGFD +E+H AHGY
Sbjct: 125 DEQSATPV---------------EXSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGY 169
Query: 209 LIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDS 268
LI +FL N RTD+YGGS ENR RF EI++ V ++ + +R+S ++Y + G
Sbjct: 170 LIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEV-KQVWDGPLFVRVSA-SDYTDKGLD 227
Query: 269 NPEALGLYMAESLNKYGILYC---------------HMVEPRMKTREEKSECPHSLLPMR 313
+ +G ++ C + V K RE+
Sbjct: 228 IADHIGFAKWXKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ------------ 275
Query: 314 KAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 357
A T V D + + GRADL+ GR L +P R
Sbjct: 276 -ADXATGAVGXITDGSXAEEILQNGRADLIFIGRELLRDPFFAR 318
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
Length = 349
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 9/220 (4%)
Query: 31 LFLTPYKMGNFNLSHRVVLAPLTRQRSY--NNVPQPHAILYYSQRTTKG-GFLIAEATGV 87
L TP ++G L +R+ ++P+ + + V H +L+Y R G G ++ EAT V
Sbjct: 3 LLFTPLELGGLRLKNRLAMSPMCQYSATLEGEVTDWH-LLHYPTRALGGVGLILVEATAV 61
Query: 88 SNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPIS 147
+ +P IW+++ + K + + G + Q+ H GR + G P+
Sbjct: 62 EPLGRISPYDLGIWSEDHLPGLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLG 121
Query: 148 CTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHG 207
+P G V P L + +I+ F AR A+ AGF +ELH AHG
Sbjct: 122 WRVVGPSPIPFDEGYPV-----PEPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHG 176
Query: 208 YLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEI 247
YL+ FL N RTD YGGSLENR RF L++ +AV +
Sbjct: 177 YLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVV 216
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 24 AIETPVILFLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGF--LI 81
A+ P + P ++G F +R P Y + P A + +GG+ +
Sbjct: 6 AVAAPYDVLFEPVQIGPFTTKNRFYQVPHCNGMGYRD---PSAQASMRKIKAEGGWSAVC 62
Query: 82 AEATGVSNTAQGNPNTP-SIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQP 140
E + T+ P IW + + A K I DA+H GG+ ++ H G N Q
Sbjct: 63 TEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHEGGGLAGIELAHNG--MNAPNQL 120
Query: 141 NGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGV 200
+ + P+ P+ P D R + +I + R A R +IEAG+D V
Sbjct: 121 SRETPLGPGHLPVAP-------DTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIV 173
Query: 201 ELHGAHGYL-IDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNE 246
++GAHGY + FL + N RTD+YGGSLENR R E++E +E
Sbjct: 174 YVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDE 220
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 22/271 (8%)
Query: 100 IWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRA 159
IW + V K + D VH G + ++ + G + PN ++ + P P A
Sbjct: 77 IWDEGDVRNLKAMTDEVHKYGALAGVELWYGGA-----HAPNMESRAT----PRGPSQYA 127
Query: 160 NGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVN 219
+ + + + + +I Q+ + AA+ + +AGFD V ++GAH YL QFL N
Sbjct: 128 SEFETLSYC--KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYN 185
Query: 220 DRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALG---L 275
RTD+YGGSLENR RF LE +E V + +G+D + R Y G E G +
Sbjct: 186 KRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVY-GPGQIEAEVDGQKFV 244
Query: 276 YMAESL-NKYGILYCHMVEPRMKTREEKSECPHSLLP----MRKAFKGTFLVAGGY-DRE 329
MA+SL + + I + E + +P +++ K L G Y D E
Sbjct: 245 EMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPE 304
Query: 330 DGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360
+ + +G AD++ R +A+P LP++ E
Sbjct: 305 KMIEIVTKGYADIIGCARPSIADPFLPQKVE 335
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 22/271 (8%)
Query: 100 IWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRA 159
IW + V K + D VH G + ++ + G + PN ++ + P P A
Sbjct: 77 IWDEGDVRNLKAMTDEVHKYGALAGVELWYGGA-----HAPNMESRAT----PRGPSQYA 127
Query: 160 NGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVN 219
+ + + + + +I Q+ + AA+ + +AGFD V ++GAH YL QFL N
Sbjct: 128 SEFETLSYC--KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYN 185
Query: 220 DRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALG---L 275
RTD+YGGSLENR RF LE +E V + +G+D + R Y G E G +
Sbjct: 186 KRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVY-GPGQIEAEVDGQKFV 244
Query: 276 YMAESL-NKYGILYCHMVEPRMKTREEKSECPHSLLP----MRKAFKGTFLVAGGY-DRE 329
MA+SL + + I + E + +P +++ K L G Y D E
Sbjct: 245 EMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPE 304
Query: 330 DGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360
+ + +G AD++ R +A+P LP++ E
Sbjct: 305 KMIEIVTKGYADIIGCARPSIADPFLPQKVE 335
>pdb|3L5A|A Chain A, Crystal Structure Of A Probable Nadh-Dependent Flavin
Oxidoreductase From Staphylococcus Aureus
Length = 419
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 120 GGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIP 179
G + Q+ H GR SN+ G+ P T V +A ++I
Sbjct: 117 GSLAIIQLAHAGRFSNQAILNFGKV---YGPSPXTLHSPIEHVVIAX-------SHEKIN 166
Query: 180 QIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGG-SLENRCRFALE 238
I+ +R A AI+AGFDGVE+ A LI F N RTD YG SL+NR R LE
Sbjct: 167 SIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLE 226
Query: 239 IVEAVSNEIGADR-----VGIRLSP 258
+ AV I + +G R +P
Sbjct: 227 VXRAVQEVIDKEAPDNFILGFRATP 251
>pdb|3EZK|A Chain A, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
pdb|3EZK|B Chain B, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
pdb|3EZK|C Chain C, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
pdb|3EZK|D Chain D, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
pdb|3EZK|E Chain E, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
Length = 577
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGN 94
P K ++ H++V P NN +P Y + K + G+ N + N
Sbjct: 49 PEKFSDYLRLHKIVKIP-------NNSDKPELFQTYKDKNNKR----SRYMGLPNLKRAN 97
Query: 95 PNTPSIWTKEQVEAWKPIVDAVHAKGGIFF----CQIRHVG----RVSNRDYQ 139
T WT+E VE WK D + ++F C I H+ +V RDYQ
Sbjct: 98 IKTQ--WTREMVEEWKKCRDDI-----VYFAETYCAITHIDYGVIKVQLRDYQ 143
>pdb|3CPE|A Chain A, Crystal Structure Of T4 Gp17
Length = 592
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGN 94
P K ++ H++V P NN +P Y + K + G+ N + N
Sbjct: 74 PEKFSDYLRLHKIVKIP-------NNSDKPELFQTYKDKNNKR----SRYMGLPNLKRAN 122
Query: 95 PNTPSIWTKEQVEAWKPIVDAVHAKGGIFF----CQIRHVG----RVSNRDYQ 139
T WT+E VE WK D + ++F C I H+ +V RDYQ
Sbjct: 123 IKTQ--WTREMVEEWKKCRDDI-----VYFAETYCAITHIDYGVIKVQLRDYQ 168
>pdb|2O0H|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Atp
pdb|2O0J|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Adp
pdb|2O0K|A Chain A, T4 Gp17 Atpase Domain Mutant
Length = 385
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGN 94
P K ++ H++V P NN +P Y + K + G+ N + N
Sbjct: 74 PEKFSDYLRLHKIVKIP-------NNSDKPELFQTYKDKNNKR----SRYMGLPNLKRAN 122
Query: 95 PNTPSIWTKEQVEAWKPIVDAVHAKGGIFF----CQIRHVG----RVSNRDYQ 139
T WT+E VE WK D + ++F C I H+ +V RDYQ
Sbjct: 123 IKTQ--WTREMVEEWKKCRDDI-----VYFAETYCAITHIDYGVIKVQLRDYQ 168
>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
pdb|1VC4|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
Length = 254
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 310 LPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDL 355
L ++ F G + GY R++ KA+ EG D V+ G + PDL
Sbjct: 201 LARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDL 245
>pdb|2QLX|A Chain A, Crystal Structure Of Rhamnose Mutarotase Rhau Of Rhizobium
Leguminosarum In Complex With L-rhamnose
pdb|2QLX|B Chain B, Crystal Structure Of Rhamnose Mutarotase Rhau Of Rhizobium
Leguminosarum In Complex With L-rhamnose
Length = 108
Score = 28.5 bits (62), Expect = 7.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDY----QPNGQAPIS 147
Q NP + + K E W +VD +H G + H+ R +N + +P S
Sbjct: 13 QLNPGXEAEYRKRHDEIWPELVDLLHQSGASDYSI--HLDRETNTLFGVLTRPKDHTXAS 70
Query: 148 CTDKPLTPQIRANGVDVAQFTP 169
D P+ + A+ D+ P
Sbjct: 71 LPDHPVXKKWWAHXADIXATNP 92
>pdb|2QLW|A Chain A, Crystal Structure Of Rhamnose Mutarotase Rhau Of Rhizobium
Leguminosarum
pdb|2QLW|B Chain B, Crystal Structure Of Rhamnose Mutarotase Rhau Of Rhizobium
Leguminosarum
Length = 144
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 92 QGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDY----QPNGQAPIS 147
Q NP + + K E W +VD +H G + H+ R +N + +P S
Sbjct: 49 QLNPGXEAEYRKRHDEIWPELVDLLHQSGASDYSI--HLDRETNTLFGVLTRPKDHTXAS 106
Query: 148 CTDKPLTPQIRANGVDVAQFTP 169
D P+ + A+ D+ P
Sbjct: 107 LPDHPVXKKWWAHXADIXATNP 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,492,098
Number of Sequences: 62578
Number of extensions: 542758
Number of successful extensions: 1336
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 68
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)