Query 015862
Match_columns 399
No_of_seqs 189 out of 1339
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 01:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02411 12-oxophytodienoate r 100.0 8E-89 1.7E-93 682.7 38.6 360 29-389 9-385 (391)
2 COG1902 NemA NADH:flavin oxido 100.0 2.6E-87 5.6E-92 661.2 36.7 325 29-365 3-337 (363)
3 PRK10605 N-ethylmaleimide redu 100.0 8.3E-87 1.8E-91 662.4 38.4 355 30-388 1-362 (362)
4 cd02933 OYE_like_FMN Old yello 100.0 5.1E-83 1.1E-87 630.2 37.5 336 31-369 1-337 (338)
5 PF00724 Oxidored_FMN: NADH:fl 100.0 3.5E-83 7.6E-88 633.6 24.6 324 31-365 1-340 (341)
6 cd04747 OYE_like_5_FMN Old yel 100.0 4.2E-81 9.2E-86 618.9 36.1 329 32-371 1-355 (361)
7 cd04734 OYE_like_3_FMN Old yel 100.0 6.6E-81 1.4E-85 617.0 35.6 318 32-364 1-333 (343)
8 PRK13523 NADPH dehydrogenase N 100.0 8.4E-81 1.8E-85 613.5 33.7 316 31-365 2-324 (337)
9 cd04733 OYE_like_2_FMN Old yel 100.0 1.2E-80 2.6E-85 615.3 33.7 319 32-362 1-338 (338)
10 cd02929 TMADH_HD_FMN Trimethyl 100.0 3.2E-80 6.9E-85 617.6 35.2 343 28-383 4-370 (370)
11 cd04735 OYE_like_4_FMN Old yel 100.0 5.3E-80 1.1E-84 613.3 33.0 325 32-370 1-339 (353)
12 cd02931 ER_like_FMN Enoate red 100.0 1.4E-78 3E-83 608.2 36.1 323 32-364 1-353 (382)
13 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 2E-78 4.4E-83 602.5 34.5 314 32-364 1-324 (353)
14 cd02803 OYE_like_FMN_family Ol 100.0 2.4E-77 5.1E-82 589.5 33.1 315 33-362 1-327 (327)
15 cd02932 OYE_YqiM_FMN Old yello 100.0 5E-77 1.1E-81 589.1 34.5 317 32-361 1-335 (336)
16 PRK08255 salicylyl-CoA 5-hydro 100.0 6E-74 1.3E-78 621.0 36.5 326 28-366 395-737 (765)
17 KOG0134 NADH:flavin oxidoreduc 100.0 3.3E-55 7.2E-60 426.8 15.7 361 29-391 6-393 (400)
18 TIGR00737 nifR3_yhdG putative 100.0 1.6E-31 3.6E-36 262.6 21.6 235 38-361 1-237 (319)
19 cd02801 DUS_like_FMN Dihydrour 100.0 1.2E-30 2.6E-35 244.6 20.5 163 183-363 67-230 (231)
20 PRK10550 tRNA-dihydrouridine s 100.0 4.2E-30 9E-35 250.9 22.2 165 183-364 75-242 (312)
21 PRK11815 tRNA-dihydrouridine s 100.0 5.1E-28 1.1E-32 238.7 21.9 228 44-361 10-248 (333)
22 PRK10415 tRNA-dihydrouridine s 100.0 2.4E-27 5.3E-32 232.8 22.1 237 36-361 1-239 (321)
23 COG0042 tRNA-dihydrouridine sy 99.9 5.2E-27 1.1E-31 230.0 19.0 238 35-359 1-241 (323)
24 TIGR01037 pyrD_sub1_fam dihydr 99.9 3.6E-26 7.8E-31 222.9 23.6 245 35-363 2-280 (300)
25 TIGR00742 yjbN tRNA dihydrouri 99.9 6E-26 1.3E-30 222.1 21.8 162 183-361 67-238 (318)
26 cd04740 DHOD_1B_like Dihydroor 99.9 2.1E-25 4.5E-30 217.1 24.9 245 36-364 2-278 (296)
27 PRK07259 dihydroorotate dehydr 99.9 3.2E-24 7E-29 209.3 22.1 243 35-364 3-281 (301)
28 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 9.8E-22 2.1E-26 190.6 24.0 242 37-362 2-289 (289)
29 PF01207 Dus: Dihydrouridine s 99.9 3.7E-23 8E-28 202.2 10.9 166 183-365 66-235 (309)
30 cd02911 arch_FMN Archeal FMN-b 99.9 2E-20 4.3E-25 175.8 17.9 225 46-360 1-232 (233)
31 KOG2335 tRNA-dihydrouridine sy 99.9 7.1E-21 1.5E-25 183.5 14.9 155 184-358 87-245 (358)
32 PRK05286 dihydroorotate dehydr 99.8 1.6E-19 3.4E-24 179.2 19.0 246 35-362 50-335 (344)
33 cd04739 DHOD_like Dihydroorota 99.8 4.4E-19 9.5E-24 174.7 20.9 243 35-364 3-285 (325)
34 cd02940 DHPD_FMN Dihydropyrimi 99.8 5.8E-19 1.3E-23 172.1 21.4 248 35-362 3-298 (299)
35 cd04738 DHOD_2_like Dihydrooro 99.8 1.1E-18 2.4E-23 172.1 20.4 248 35-362 40-326 (327)
36 PRK07565 dihydroorotate dehydr 99.8 4.9E-18 1.1E-22 168.1 21.3 154 184-364 115-287 (334)
37 TIGR00736 nifR3_rel_arch TIM-b 99.8 1.3E-17 2.8E-22 155.7 19.2 207 68-352 8-226 (231)
38 PRK08318 dihydropyrimidine deh 99.7 1.7E-16 3.7E-21 161.8 21.8 247 35-363 5-300 (420)
39 cd04741 DHOD_1A_like Dihydroor 99.7 3.1E-16 6.8E-21 152.5 22.6 241 37-362 2-289 (294)
40 TIGR01036 pyrD_sub2 dihydrooro 99.6 8.9E-14 1.9E-18 137.5 23.6 155 182-362 153-334 (335)
41 cd04722 TIM_phosphate_binding 99.5 1.5E-12 3.3E-17 117.2 20.6 185 64-347 12-200 (200)
42 PRK02506 dihydroorotate dehydr 99.5 9.6E-13 2.1E-17 128.9 20.6 157 183-364 105-289 (310)
43 PLN02495 oxidoreductase, actin 99.5 3.3E-12 7.2E-17 127.7 24.2 158 183-364 127-318 (385)
44 PF01180 DHO_dh: Dihydroorotat 99.5 8E-13 1.7E-17 128.7 19.0 157 180-362 109-290 (295)
45 COG0167 PyrD Dihydroorotate de 99.4 2.1E-11 4.6E-16 118.1 20.1 155 183-364 109-289 (310)
46 KOG2333 Uncharacterized conser 99.4 3.3E-12 7.2E-17 126.8 13.6 245 32-365 252-504 (614)
47 PLN02826 dihydroorotate dehydr 99.4 5.2E-11 1.1E-15 120.2 21.3 159 179-363 200-388 (409)
48 cd03316 MR_like Mandelate race 99.4 1.3E-11 2.7E-16 123.4 14.9 128 182-345 140-269 (357)
49 cd02809 alpha_hydroxyacid_oxid 99.3 9.9E-11 2.1E-15 114.3 17.8 129 186-353 132-263 (299)
50 TIGR02151 IPP_isom_2 isopenten 99.3 2.4E-10 5.1E-15 113.2 18.4 141 195-363 140-305 (333)
51 cd02811 IDI-2_FMN Isopentenyl- 98.9 8.1E-08 1.8E-12 94.9 19.5 132 193-352 137-290 (326)
52 TIGR01304 IMP_DH_rel_2 IMP deh 98.9 3.3E-08 7.1E-13 98.6 15.9 116 186-349 102-219 (369)
53 cd00381 IMPDH IMPDH: The catal 98.8 4.6E-07 1E-11 89.5 19.6 134 185-358 95-238 (325)
54 PRK05437 isopentenyl pyrophosp 98.8 1.2E-07 2.5E-12 94.7 15.3 132 193-352 145-296 (352)
55 cd04730 NPD_like 2-Nitropropan 98.8 7.2E-07 1.6E-11 83.8 19.5 122 186-355 70-194 (236)
56 cd03319 L-Ala-DL-Glu_epimerase 98.8 1.5E-07 3.2E-12 92.6 15.1 121 183-346 136-258 (316)
57 cd03315 MLE_like Muconate lact 98.8 2.1E-07 4.5E-12 89.3 15.4 121 183-345 87-209 (265)
58 PRK13585 1-(5-phosphoribosyl)- 98.7 2.2E-07 4.7E-12 87.8 14.5 145 187-361 89-237 (241)
59 cd03329 MR_like_4 Mandelate ra 98.7 1.8E-07 3.9E-12 94.0 14.4 123 183-345 145-270 (368)
60 PRK04180 pyridoxal biosynthesi 98.7 1.3E-07 2.9E-12 90.0 11.3 52 305-357 191-245 (293)
61 cd04732 HisA HisA. Phosphorib 98.7 3.9E-07 8.5E-12 85.5 14.2 83 274-358 148-231 (234)
62 PRK14024 phosphoribosyl isomer 98.7 3E-07 6.5E-12 87.1 13.2 147 186-360 87-236 (241)
63 PRK05458 guanosine 5'-monophos 98.6 9.2E-07 2E-11 86.9 15.8 129 186-355 99-239 (326)
64 cd04731 HisF The cyclase subun 98.6 9.4E-07 2E-11 83.6 15.0 82 271-353 148-230 (243)
65 PRK01130 N-acetylmannosamine-6 98.6 7.7E-07 1.7E-11 83.0 13.2 134 187-360 79-215 (221)
66 PRK08649 inosine 5-monophospha 98.6 2.1E-06 4.6E-11 85.9 16.9 100 233-349 117-218 (368)
67 PRK00748 1-(5-phosphoribosyl)- 98.5 8.6E-07 1.9E-11 83.2 12.3 78 274-352 148-226 (233)
68 cd04731 HisF The cyclase subun 98.5 3.1E-07 6.7E-12 86.9 9.3 88 273-362 28-116 (243)
69 TIGR03572 WbuZ glycosyl amidat 98.5 1.4E-06 3E-11 81.9 13.5 76 273-349 154-230 (232)
70 cd04732 HisA HisA. Phosphorib 98.5 6.4E-07 1.4E-11 84.1 9.5 89 273-363 30-119 (234)
71 cd03327 MR_like_2 Mandelate ra 98.5 3.4E-06 7.4E-11 83.9 15.1 128 183-345 122-251 (341)
72 cd03328 MR_like_3 Mandelate ra 98.5 2.1E-06 4.6E-11 85.8 13.5 120 184-345 141-264 (352)
73 cd00945 Aldolase_Class_I Class 98.5 7E-06 1.5E-10 74.4 15.7 133 183-346 65-201 (201)
74 COG4948 L-alanine-DL-glutamate 98.5 2.7E-06 6E-11 85.6 13.8 122 183-345 145-268 (372)
75 PRK02083 imidazole glycerol ph 98.5 7.7E-07 1.7E-11 84.8 9.3 88 274-363 32-120 (253)
76 TIGR00735 hisF imidazoleglycer 98.4 3.3E-06 7.2E-11 80.6 13.5 139 186-352 86-235 (254)
77 cd03321 mandelate_racemase Man 98.4 1.6E-06 3.5E-11 86.7 11.9 122 183-345 143-266 (355)
78 TIGR00007 phosphoribosylformim 98.4 2.7E-06 5.9E-11 79.7 12.7 77 274-352 147-224 (230)
79 PRK01033 imidazole glycerol ph 98.4 2.2E-06 4.7E-11 82.0 11.9 84 274-358 154-238 (258)
80 cd03326 MR_like_1 Mandelate ra 98.4 3.1E-06 6.8E-11 85.5 13.4 121 184-345 163-289 (385)
81 cd04729 NanE N-acetylmannosami 98.4 2.7E-06 5.8E-11 79.3 11.6 131 186-355 82-215 (219)
82 cd04737 LOX_like_FMN L-Lactate 98.4 8E-06 1.7E-10 81.3 14.8 102 235-353 208-312 (351)
83 KOG2334 tRNA-dihydrouridine sy 98.4 3.3E-06 7.2E-11 83.6 11.2 147 191-356 101-252 (477)
84 cd03324 rTSbeta_L-fuconate_deh 98.4 8.4E-06 1.8E-10 83.2 14.7 121 183-345 198-323 (415)
85 PRK06806 fructose-bisphosphate 98.4 6.7E-05 1.4E-09 72.6 20.1 141 187-353 88-237 (281)
86 TIGR00735 hisF imidazoleglycer 98.4 1.9E-06 4.1E-11 82.3 9.3 87 274-362 32-119 (254)
87 PRK15072 bifunctional D-altron 98.3 1.4E-05 3.1E-10 81.3 15.4 144 184-345 130-286 (404)
88 TIGR02708 L_lactate_ox L-lacta 98.3 8.3E-06 1.8E-10 81.4 12.8 100 235-351 215-317 (367)
89 PRK07695 transcriptional regul 98.3 2.7E-05 5.9E-10 71.6 15.3 81 278-360 108-191 (201)
90 cd03322 rpsA The starvation se 98.3 1.3E-05 2.8E-10 80.5 13.7 114 183-345 128-243 (361)
91 TIGR01306 GMP_reduct_2 guanosi 98.3 2.2E-05 4.8E-10 76.9 14.7 123 191-353 101-234 (321)
92 cd02808 GltS_FMN Glutamate syn 98.2 2.4E-05 5.2E-10 79.3 14.7 105 234-351 199-319 (392)
93 cd04727 pdxS PdxS is a subunit 98.2 7.1E-05 1.5E-09 71.4 16.0 140 170-354 49-233 (283)
94 TIGR01302 IMP_dehydrog inosine 98.2 2.6E-05 5.7E-10 80.4 14.2 142 184-365 224-377 (450)
95 PRK14017 galactonate dehydrata 98.2 4.6E-05 9.9E-10 77.0 15.7 130 183-345 126-257 (382)
96 PRK07315 fructose-bisphosphate 98.2 0.00024 5.2E-09 69.1 20.0 145 188-361 91-245 (293)
97 TIGR03151 enACPred_II putative 98.2 3.9E-05 8.5E-10 75.2 14.6 119 188-354 79-198 (307)
98 cd03325 D-galactonate_dehydrat 98.2 4.3E-05 9.2E-10 76.4 14.8 128 185-345 127-256 (352)
99 PF00478 IMPDH: IMP dehydrogen 98.2 9.1E-05 2E-09 73.5 16.6 130 186-355 110-249 (352)
100 PTZ00314 inosine-5'-monophosph 98.2 2.7E-05 5.9E-10 81.1 13.5 141 185-365 242-394 (495)
101 PRK06843 inosine 5-monophospha 98.2 3.9E-05 8.5E-10 77.4 14.1 134 185-358 154-297 (404)
102 cd02922 FCB2_FMN Flavocytochro 98.1 7.7E-05 1.7E-09 74.2 16.0 151 186-354 134-308 (344)
103 PRK02714 O-succinylbenzoate sy 98.1 3.7E-05 8E-10 75.9 13.6 121 184-345 121-246 (320)
104 COG0352 ThiE Thiamine monophos 98.1 6.8E-05 1.5E-09 69.4 14.1 104 240-361 94-201 (211)
105 PRK06512 thiamine-phosphate py 98.1 0.00016 3.4E-09 67.7 16.7 104 240-360 100-206 (221)
106 PF04131 NanE: Putative N-acet 98.1 5.2E-05 1.1E-09 68.3 12.4 130 186-359 54-185 (192)
107 PRK15440 L-rhamnonate dehydrat 98.1 4.5E-05 9.8E-10 77.3 13.4 118 193-345 169-290 (394)
108 PRK00507 deoxyribose-phosphate 98.1 8.6E-05 1.9E-09 69.3 14.0 129 186-349 77-211 (221)
109 TIGR02534 mucon_cyclo muconate 98.1 4.8E-05 1E-09 76.5 13.1 112 193-345 154-267 (368)
110 cd04728 ThiG Thiazole synthase 98.1 0.00018 3.8E-09 67.5 15.7 132 185-355 78-215 (248)
111 TIGR01163 rpe ribulose-phospha 98.1 9.9E-05 2.2E-09 67.9 14.2 51 309-360 152-207 (210)
112 cd03318 MLE Muconate Lactonizi 98.1 5.2E-05 1.1E-09 76.1 13.2 118 187-345 148-268 (365)
113 cd04726 KGPDC_HPS 3-Keto-L-gul 98.1 0.00017 3.6E-09 66.1 15.3 130 189-360 70-200 (202)
114 TIGR03572 WbuZ glycosyl amidat 98.1 2E-05 4.4E-10 74.0 9.4 88 273-362 31-119 (232)
115 PRK13125 trpA tryptophan synth 98.0 0.00013 2.7E-09 69.3 14.7 153 183-351 18-219 (244)
116 PLN02274 inosine-5'-monophosph 98.0 6.8E-05 1.5E-09 78.3 13.7 142 185-366 249-402 (505)
117 TIGR03247 glucar-dehydr glucar 98.0 6.2E-05 1.3E-09 77.4 13.1 122 185-345 184-308 (441)
118 PRK02083 imidazole glycerol ph 98.0 9.9E-05 2.1E-09 70.3 13.3 78 274-352 155-233 (253)
119 TIGR01949 AroFGH_arch predicte 98.0 0.0002 4.2E-09 68.6 15.3 140 186-360 93-241 (258)
120 PRK00748 1-(5-phosphoribosyl)- 98.0 2.5E-05 5.5E-10 73.2 9.0 87 274-362 32-119 (233)
121 PRK00208 thiG thiazole synthas 98.0 0.00035 7.5E-09 65.6 15.9 132 185-355 78-215 (250)
122 TIGR00126 deoC deoxyribose-pho 98.0 0.00015 3.2E-09 67.2 13.5 131 186-348 73-206 (211)
123 cd03323 D-glucarate_dehydratas 98.0 0.00013 2.9E-09 74.1 14.3 116 184-344 171-289 (395)
124 TIGR01303 IMP_DH_rel_1 IMP deh 98.0 4.4E-05 9.5E-10 79.1 10.8 144 174-358 215-369 (475)
125 cd03320 OSBS o-Succinylbenzoat 98.0 7.8E-05 1.7E-09 71.4 11.9 117 186-345 87-205 (263)
126 TIGR01859 fruc_bis_ald_ fructo 98.0 0.00084 1.8E-08 65.1 18.9 139 186-350 87-234 (282)
127 PRK06801 hypothetical protein; 98.0 0.0014 3.1E-08 63.5 20.2 140 186-351 87-238 (286)
128 TIGR03128 RuMP_HxlA 3-hexulose 98.0 0.00038 8.2E-09 64.0 15.6 130 188-359 68-199 (206)
129 PRK07807 inosine 5-monophospha 97.9 0.00012 2.6E-09 76.0 13.4 147 173-359 216-372 (479)
130 cd03317 NAAAR N-acylamino acid 97.9 0.00018 4E-09 71.8 14.1 117 183-345 139-257 (354)
131 PRK14024 phosphoribosyl isomer 97.9 4E-05 8.7E-10 72.6 8.7 86 274-362 34-120 (241)
132 PLN02334 ribulose-phosphate 3- 97.9 0.00016 3.5E-09 67.9 12.8 132 183-360 78-216 (229)
133 cd00958 DhnA Class I fructose- 97.9 0.00037 8E-09 65.5 15.2 142 185-360 78-228 (235)
134 PRK07107 inosine 5-monophospha 97.9 0.00014 3.1E-09 75.8 13.2 134 184-356 242-391 (502)
135 PF04481 DUF561: Protein of un 97.9 0.00012 2.7E-09 66.8 10.9 136 190-351 75-219 (242)
136 PRK07226 fructose-bisphosphate 97.9 0.00019 4E-09 69.1 12.7 141 185-359 95-244 (267)
137 PRK07028 bifunctional hexulose 97.9 0.00027 5.9E-09 72.6 14.7 128 188-357 73-201 (430)
138 PRK03512 thiamine-phosphate py 97.9 0.0011 2.4E-08 61.5 17.3 79 280-360 117-200 (211)
139 cd00959 DeoC 2-deoxyribose-5-p 97.9 0.00033 7.2E-09 64.5 13.7 128 186-345 72-202 (203)
140 PRK02901 O-succinylbenzoate sy 97.9 0.00021 4.5E-09 70.8 13.1 110 195-345 101-213 (327)
141 TIGR00343 pyridoxal 5'-phospha 97.8 0.00069 1.5E-08 64.8 15.5 141 170-355 51-239 (287)
142 TIGR01927 menC_gamma/gm+ o-suc 97.8 0.00036 7.8E-09 68.5 14.1 109 194-345 122-235 (307)
143 PRK13585 1-(5-phosphoribosyl)- 97.8 7.3E-05 1.6E-09 70.6 8.9 87 274-362 34-121 (241)
144 PLN02979 glycolate oxidase 97.8 0.0003 6.5E-09 69.9 13.1 98 237-351 212-312 (366)
145 TIGR00262 trpA tryptophan synt 97.8 0.00076 1.7E-08 64.5 15.2 154 183-351 24-232 (256)
146 PRK02615 thiamine-phosphate py 97.8 0.00054 1.2E-08 68.1 14.5 102 240-359 230-335 (347)
147 cd00564 TMP_TenI Thiamine mono 97.8 0.0027 5.9E-08 57.2 18.1 83 278-361 108-193 (196)
148 cd04724 Tryptophan_synthase_al 97.8 0.00059 1.3E-08 64.7 14.1 153 183-350 14-219 (242)
149 PF01070 FMN_dh: FMN-dependent 97.8 0.00017 3.6E-09 72.2 10.8 100 235-351 212-314 (356)
150 PRK00278 trpC indole-3-glycero 97.8 0.0012 2.6E-08 63.3 16.1 146 186-360 73-254 (260)
151 COG0269 SgbH 3-hexulose-6-phos 97.8 0.00074 1.6E-08 62.1 13.8 134 186-360 70-206 (217)
152 TIGR01928 menC_lowGC/arch o-su 97.8 0.00045 9.7E-09 68.3 13.5 117 184-345 135-252 (324)
153 COG0107 HisF Imidazoleglycerol 97.8 9.5E-05 2.1E-09 68.2 7.8 83 274-361 32-118 (256)
154 PF02581 TMP-TENI: Thiamine mo 97.7 0.0008 1.7E-08 60.8 13.7 129 173-349 36-180 (180)
155 PF01645 Glu_synthase: Conserv 97.7 0.00026 5.7E-09 70.7 11.5 106 233-351 187-308 (368)
156 cd00429 RPE Ribulose-5-phospha 97.7 0.00097 2.1E-08 61.2 14.6 53 308-361 152-209 (211)
157 PRK05096 guanosine 5'-monophos 97.7 0.0004 8.6E-09 68.0 12.3 134 185-358 110-254 (346)
158 PLN02591 tryptophan synthase 97.7 0.0018 3.9E-08 61.6 16.4 154 183-351 16-223 (250)
159 cd04736 MDH_FMN Mandelate dehy 97.7 0.00026 5.6E-09 70.7 10.9 99 235-350 223-322 (361)
160 PLN02535 glycolate oxidase 97.7 0.00027 5.9E-09 70.6 10.5 103 235-354 210-315 (364)
161 TIGR02129 hisA_euk phosphoribo 97.7 0.0002 4.4E-09 67.9 9.1 80 275-362 41-124 (253)
162 PRK05567 inosine 5'-monophosph 97.7 0.00058 1.3E-08 71.3 13.3 131 186-356 230-370 (486)
163 PRK11197 lldD L-lactate dehydr 97.7 0.00078 1.7E-08 67.7 13.5 97 238-351 235-334 (381)
164 cd00331 IGPS Indole-3-glycerol 97.7 0.0024 5.2E-08 59.3 15.9 127 188-360 86-215 (217)
165 PRK13587 1-(5-phosphoribosyl)- 97.7 0.00019 4.2E-09 67.7 8.6 86 275-362 34-121 (234)
166 CHL00200 trpA tryptophan synth 97.6 0.0019 4E-08 62.0 15.1 153 183-350 29-235 (263)
167 TIGR01304 IMP_DH_rel_2 IMP deh 97.6 0.00083 1.8E-08 67.4 13.1 133 184-353 143-291 (369)
168 PRK08185 hypothetical protein; 97.6 0.0073 1.6E-07 58.5 19.0 134 189-348 84-230 (283)
169 CHL00162 thiG thiamin biosynth 97.6 0.0019 4.1E-08 60.8 14.3 134 185-358 86-230 (267)
170 PRK08649 inosine 5-monophospha 97.6 0.00079 1.7E-08 67.6 12.6 139 184-358 142-297 (368)
171 PRK13111 trpA tryptophan synth 97.6 0.0018 3.9E-08 62.0 14.5 154 183-351 26-233 (258)
172 PRK01033 imidazole glycerol ph 97.6 0.0003 6.4E-09 67.4 9.1 87 274-362 32-119 (258)
173 PF00977 His_biosynth: Histidi 97.6 0.00012 2.6E-09 68.8 6.3 86 275-362 32-118 (229)
174 PLN02446 (5-phosphoribosyl)-5- 97.6 0.00031 6.8E-09 66.9 8.9 83 274-362 45-131 (262)
175 cd00405 PRAI Phosphoribosylant 97.6 0.0011 2.3E-08 61.1 12.2 121 190-355 67-190 (203)
176 TIGR00693 thiE thiamine-phosph 97.6 0.0063 1.4E-07 55.4 17.0 79 280-360 111-194 (196)
177 COG0106 HisA Phosphoribosylfor 97.6 0.00024 5.2E-09 66.4 7.6 89 274-364 33-122 (241)
178 TIGR01305 GMP_reduct_1 guanosi 97.6 0.0021 4.5E-08 63.1 14.3 129 189-357 112-252 (343)
179 PRK04128 1-(5-phosphoribosyl)- 97.6 0.00025 5.3E-09 66.7 7.7 84 274-361 32-116 (228)
180 PRK13307 bifunctional formalde 97.5 0.0028 6E-08 64.0 15.6 127 189-359 243-371 (391)
181 PRK12738 kbaY tagatose-bisphos 97.5 0.013 2.7E-07 56.9 19.5 137 186-348 87-234 (286)
182 PLN02898 HMP-P kinase/thiamin- 97.5 0.0035 7.5E-08 65.7 17.0 78 281-360 406-489 (502)
183 cd00308 enolase_like Enolase-s 97.5 0.00071 1.5E-08 63.4 10.6 92 237-345 81-174 (229)
184 PRK09195 gatY tagatose-bisphos 97.5 0.012 2.6E-07 57.0 19.1 138 187-350 88-236 (284)
185 PRK13586 1-(5-phosphoribosyl)- 97.5 0.00037 8E-09 65.7 8.4 86 274-362 32-118 (232)
186 PF03437 BtpA: BtpA family; I 97.5 0.015 3.3E-07 55.3 19.3 205 64-355 25-236 (254)
187 cd02812 PcrB_like PcrB_like pr 97.5 0.00067 1.4E-08 63.1 9.8 84 270-360 133-218 (219)
188 PRK14114 1-(5-phosphoribosyl)- 97.5 0.00039 8.4E-09 65.9 8.4 85 274-361 32-117 (241)
189 TIGR01858 tag_bisphos_ald clas 97.5 0.017 3.7E-07 55.9 19.5 137 187-349 86-233 (282)
190 PRK05581 ribulose-phosphate 3- 97.5 0.0022 4.7E-08 59.4 12.9 52 308-360 156-212 (220)
191 COG0106 HisA Phosphoribosylfor 97.5 0.0036 7.9E-08 58.6 14.1 138 186-353 87-228 (241)
192 PRK12290 thiE thiamine-phospha 97.5 0.0048 1E-07 62.8 16.0 78 281-360 316-406 (437)
193 PRK07709 fructose-bisphosphate 97.4 0.02 4.4E-07 55.4 19.1 136 187-348 91-235 (285)
194 PRK13587 1-(5-phosphoribosyl)- 97.4 0.0043 9.3E-08 58.5 14.2 136 186-351 88-226 (234)
195 COG0274 DeoC Deoxyribose-phosp 97.4 0.0023 4.9E-08 59.3 11.8 133 186-349 80-215 (228)
196 TIGR00007 phosphoribosylformim 97.4 0.00084 1.8E-08 62.9 9.3 87 274-362 30-117 (230)
197 PRK07998 gatY putative fructos 97.4 0.032 7E-07 54.0 20.3 137 188-350 89-233 (283)
198 TIGR01919 hisA-trpF 1-(5-phosp 97.4 0.00086 1.9E-08 63.6 9.0 84 276-362 35-119 (243)
199 TIGR01769 GGGP geranylgeranylg 97.4 0.0011 2.3E-08 61.3 9.3 74 269-346 131-205 (205)
200 cd03332 LMO_FMN L-Lactate 2-mo 97.4 0.0013 2.8E-08 66.2 10.6 98 236-350 241-341 (383)
201 cd04723 HisA_HisF Phosphoribos 97.3 0.00074 1.6E-08 63.6 8.2 86 274-363 37-123 (233)
202 PRK08610 fructose-bisphosphate 97.3 0.024 5.2E-07 55.0 18.7 128 189-341 93-229 (286)
203 PRK14114 1-(5-phosphoribosyl)- 97.3 0.0049 1.1E-07 58.4 13.5 138 186-353 85-230 (241)
204 TIGR00167 cbbA ketose-bisphosp 97.3 0.018 3.9E-07 55.9 17.5 137 187-349 91-239 (288)
205 PRK09517 multifunctional thiam 97.3 0.0072 1.6E-07 66.5 16.4 105 240-358 91-206 (755)
206 PRK08883 ribulose-phosphate 3- 97.3 0.0031 6.7E-08 58.9 11.7 139 171-360 64-209 (220)
207 TIGR01768 GGGP-family geranylg 97.3 0.0014 3.1E-08 61.1 9.2 81 274-360 140-222 (223)
208 PRK12737 gatY tagatose-bisphos 97.3 0.018 3.8E-07 55.9 17.1 189 106-349 28-235 (284)
209 PF05690 ThiG: Thiazole biosyn 97.3 0.015 3.3E-07 54.2 15.4 134 184-357 77-215 (247)
210 PF03060 NMO: Nitronate monoox 97.2 0.0055 1.2E-07 60.8 13.6 123 185-354 102-227 (330)
211 TIGR01919 hisA-trpF 1-(5-phosp 97.2 0.0075 1.6E-07 57.2 13.9 140 186-353 86-232 (243)
212 PRK08999 hypothetical protein; 97.2 0.0052 1.1E-07 60.2 13.1 68 280-349 241-311 (312)
213 PRK00043 thiE thiamine-phospha 97.2 0.0022 4.8E-08 59.0 9.8 78 281-360 120-202 (212)
214 PRK06552 keto-hydroxyglutarate 97.2 0.01 2.2E-07 55.1 14.1 110 186-351 78-188 (213)
215 PF00977 His_biosynth: Histidi 97.2 0.0019 4.1E-08 60.7 9.3 136 186-351 85-225 (229)
216 PRK09140 2-dehydro-3-deoxy-6-p 97.2 0.013 2.9E-07 54.1 14.7 46 306-352 138-185 (206)
217 PLN02493 probable peroxisomal 97.2 0.0022 4.7E-08 64.2 10.0 98 237-351 213-313 (367)
218 cd01572 QPRTase Quinolinate ph 97.2 0.0087 1.9E-07 57.6 13.7 106 218-350 145-258 (268)
219 PRK12857 fructose-1,6-bisphosp 97.2 0.064 1.4E-06 52.0 19.7 136 188-349 89-235 (284)
220 COG3010 NanE Putative N-acetyl 97.2 0.011 2.4E-07 53.8 13.3 51 305-358 169-220 (229)
221 PF00290 Trp_syntA: Tryptophan 97.2 0.0065 1.4E-07 58.1 12.6 154 183-351 24-231 (259)
222 TIGR00078 nadC nicotinate-nucl 97.2 0.0095 2.1E-07 57.2 13.6 106 218-350 141-254 (265)
223 PF01791 DeoC: DeoC/LacD famil 97.1 0.0066 1.4E-07 57.2 12.0 142 186-351 79-235 (236)
224 PRK08072 nicotinate-nucleotide 97.1 0.0079 1.7E-07 58.1 12.7 88 236-350 174-264 (277)
225 COG0107 HisF Imidazoleglycerol 97.1 0.007 1.5E-07 56.1 11.5 135 187-349 87-232 (256)
226 cd00377 ICL_PEPM Members of th 97.1 0.016 3.4E-07 55.0 14.3 141 184-350 85-230 (243)
227 cd00947 TBP_aldolase_IIB Tagat 97.1 0.069 1.5E-06 51.6 18.8 135 189-349 85-229 (276)
228 PRK15129 L-Ala-D/L-Glu epimera 97.1 0.013 2.8E-07 57.9 14.3 115 183-345 131-246 (321)
229 cd00452 KDPG_aldolase KDPG and 97.1 0.022 4.8E-07 51.8 14.6 61 282-350 114-175 (190)
230 PRK05835 fructose-bisphosphate 97.0 0.038 8.2E-07 54.0 16.7 137 186-348 87-257 (307)
231 COG1646 Predicted phosphate-bi 97.0 0.02 4.4E-07 53.2 13.8 52 309-361 182-235 (240)
232 PRK04169 geranylgeranylglycery 97.0 0.0062 1.3E-07 57.3 10.7 59 302-361 168-229 (232)
233 PRK13586 1-(5-phosphoribosyl)- 97.0 0.018 3.9E-07 54.3 13.8 136 186-351 85-223 (232)
234 cd01568 QPRTase_NadC Quinolina 97.0 0.016 3.4E-07 55.9 13.7 109 218-353 144-262 (269)
235 cd04723 HisA_HisF Phosphoribos 97.0 0.02 4.4E-07 53.9 14.2 132 186-352 90-224 (233)
236 PLN02446 (5-phosphoribosyl)-5- 97.0 0.016 3.4E-07 55.4 13.1 139 187-349 95-241 (262)
237 PTZ00170 D-ribulose-5-phosphat 96.9 0.014 3E-07 54.9 12.3 129 190-359 82-214 (228)
238 TIGR00734 hisAF_rel hisA/hisF 96.9 0.0032 6.9E-08 58.9 7.7 81 275-360 39-122 (221)
239 TIGR02129 hisA_euk phosphoribo 96.9 0.017 3.7E-07 54.9 12.5 139 187-351 88-237 (253)
240 PLN02617 imidazole glycerol ph 96.9 0.0032 6.8E-08 66.3 8.3 88 274-362 269-382 (538)
241 PRK05283 deoxyribose-phosphate 96.9 0.019 4E-07 54.8 12.7 127 186-342 86-220 (257)
242 PLN02980 2-oxoglutarate decarb 96.9 0.015 3.2E-07 69.2 14.5 116 184-341 1093-1214(1655)
243 COG2022 ThiG Uncharacterized e 96.8 0.06 1.3E-06 50.0 15.2 131 184-355 84-220 (262)
244 PRK13399 fructose-1,6-bisphosp 96.8 0.14 3E-06 50.9 18.7 136 188-341 90-273 (347)
245 PRK11840 bifunctional sulfur c 96.8 0.047 1E-06 53.5 15.1 135 184-359 151-291 (326)
246 PRK05105 O-succinylbenzoate sy 96.8 0.026 5.5E-07 55.8 13.3 105 195-344 127-235 (322)
247 PF01116 F_bP_aldolase: Fructo 96.7 0.098 2.1E-06 50.9 16.7 139 186-350 86-239 (287)
248 PLN02617 imidazole glycerol ph 96.7 0.023 5E-07 59.9 13.0 149 186-350 337-516 (538)
249 COG0036 Rpe Pentose-5-phosphat 96.7 0.035 7.6E-07 51.4 12.5 137 175-361 70-212 (220)
250 PRK05742 nicotinate-nucleotide 96.7 0.026 5.7E-07 54.5 12.1 109 218-353 153-268 (277)
251 PRK09197 fructose-bisphosphate 96.7 0.17 3.7E-06 50.2 18.0 145 175-341 107-275 (350)
252 PRK04302 triosephosphate isome 96.7 0.037 8.1E-07 51.7 12.9 52 308-360 163-216 (223)
253 COG0159 TrpA Tryptophan syntha 96.7 0.12 2.7E-06 49.3 16.4 153 183-350 31-237 (265)
254 PRK12858 tagatose 1,6-diphosph 96.6 0.052 1.1E-06 54.0 14.3 147 188-353 111-283 (340)
255 PRK00230 orotidine 5'-phosphat 96.6 0.031 6.8E-07 52.5 12.3 130 188-360 72-221 (230)
256 PRK09196 fructose-1,6-bisphosp 96.6 0.18 4E-06 50.1 17.8 140 189-347 91-278 (347)
257 TIGR00259 thylakoid_BtpA membr 96.6 0.17 3.7E-06 48.3 17.0 190 76-353 41-234 (257)
258 PRK07084 fructose-bisphosphate 96.6 0.17 3.6E-06 49.9 17.2 129 188-341 100-264 (321)
259 PF00218 IGPS: Indole-3-glycer 96.6 0.027 5.7E-07 53.8 11.5 150 186-361 71-253 (254)
260 PF01188 MR_MLE: Mandelate rac 96.6 0.015 3.3E-07 43.6 8.0 65 239-322 1-66 (67)
261 TIGR01740 pyrF orotidine 5'-ph 96.6 0.065 1.4E-06 49.7 13.8 140 176-360 59-210 (213)
262 PRK08005 epimerase; Validated 96.5 0.045 9.8E-07 50.7 12.2 126 192-360 77-205 (210)
263 cd03314 MAL Methylaspartate am 96.5 0.034 7.4E-07 56.0 12.2 104 233-345 176-290 (369)
264 cd00945 Aldolase_Class_I Class 96.5 0.056 1.2E-06 48.6 12.4 141 183-362 13-168 (201)
265 TIGR01521 FruBisAldo_II_B fruc 96.4 0.2 4.4E-06 49.7 17.0 137 187-341 87-271 (347)
266 TIGR00734 hisAF_rel hisA/hisF 96.4 0.018 4E-07 53.8 9.3 75 274-351 143-218 (221)
267 PRK07455 keto-hydroxyglutarate 96.4 0.011 2.3E-07 53.9 7.4 63 282-351 122-185 (187)
268 cd00408 DHDPS-like Dihydrodipi 96.4 0.064 1.4E-06 51.7 13.2 129 172-336 14-149 (281)
269 COG2513 PrpB PEP phosphonomuta 96.4 0.04 8.7E-07 52.9 11.4 155 186-364 28-202 (289)
270 COG5016 Pyruvate/oxaloacetate 96.4 0.035 7.6E-07 55.5 11.0 128 180-346 98-231 (472)
271 PRK07428 nicotinate-nucleotide 96.3 0.033 7.1E-07 54.1 10.5 113 218-353 159-278 (288)
272 PRK08227 autoinducer 2 aldolas 96.3 0.14 3.1E-06 49.0 14.7 131 190-359 101-239 (264)
273 PF04131 NanE: Putative N-acet 96.3 0.039 8.5E-07 49.9 10.1 117 186-346 2-119 (192)
274 COG0191 Fba Fructose/tagatose 96.3 0.31 6.7E-06 47.0 16.7 187 106-341 28-230 (286)
275 PRK08745 ribulose-phosphate 3- 96.2 0.16 3.4E-06 47.6 14.3 138 171-359 68-212 (223)
276 PRK13306 ulaD 3-keto-L-gulonat 96.2 0.052 1.1E-06 50.6 11.0 126 192-358 76-203 (216)
277 TIGR01060 eno phosphopyruvate 96.2 0.047 1E-06 56.1 11.7 109 229-345 212-335 (425)
278 TIGR01502 B_methylAsp_ase meth 96.2 0.11 2.4E-06 53.0 14.2 135 183-345 180-326 (408)
279 PRK05848 nicotinate-nucleotide 96.1 0.15 3.2E-06 49.2 13.9 109 218-353 145-264 (273)
280 TIGR01182 eda Entner-Doudoroff 96.1 0.13 2.7E-06 47.5 12.9 47 306-353 136-183 (204)
281 cd00946 FBP_aldolase_IIA Class 96.1 0.77 1.7E-05 45.7 19.0 148 177-347 104-276 (345)
282 TIGR02317 prpB methylisocitrat 96.1 0.2 4.3E-06 48.7 14.5 138 185-350 90-233 (285)
283 cd06556 ICL_KPHMT Members of t 96.1 0.13 2.9E-06 48.6 13.0 147 186-364 22-191 (240)
284 COG1304 idi Isopentenyl diphos 96.1 0.011 2.4E-07 59.1 6.0 71 280-351 234-307 (360)
285 PRK08091 ribulose-phosphate 3- 96.0 0.27 5.9E-06 46.1 14.8 139 171-359 74-220 (228)
286 PRK14057 epimerase; Provisiona 96.0 0.098 2.1E-06 49.8 11.9 141 171-361 81-236 (254)
287 TIGR00343 pyridoxal 5'-phospha 96.0 0.085 1.8E-06 50.7 11.5 120 186-346 20-141 (287)
288 PRK13813 orotidine 5'-phosphat 96.0 0.24 5.1E-06 45.8 14.4 129 190-359 74-205 (215)
289 cd00003 PNPsynthase Pyridoxine 96.0 0.081 1.8E-06 49.4 11.0 72 282-353 141-218 (234)
290 TIGR00559 pdxJ pyridoxine 5'-p 95.9 0.11 2.4E-06 48.6 11.5 72 282-353 141-219 (237)
291 PF03740 PdxJ: Pyridoxal phosp 95.9 0.02 4.4E-07 53.6 6.6 152 185-353 24-221 (239)
292 PF01884 PcrB: PcrB family; I 95.9 0.019 4.1E-07 53.8 6.3 47 308-355 173-220 (230)
293 PRK07565 dihydroorotate dehydr 95.8 0.26 5.6E-06 48.9 14.5 141 186-345 27-196 (334)
294 PRK06852 aldolase; Validated 95.8 0.28 6.2E-06 47.9 14.2 82 270-355 186-274 (304)
295 PRK04128 1-(5-phosphoribosyl)- 95.7 0.13 2.9E-06 48.3 11.5 36 316-352 181-217 (228)
296 TIGR02320 PEP_mutase phosphoen 95.7 0.4 8.7E-06 46.6 15.0 139 185-349 94-243 (285)
297 cd04725 OMP_decarboxylase_like 95.7 0.3 6.6E-06 45.4 13.6 141 177-360 60-214 (216)
298 TIGR01520 FruBisAldo_II_A fruc 95.7 0.96 2.1E-05 45.1 17.6 117 228-347 147-288 (357)
299 COG2070 Dioxygenases related t 95.7 0.018 3.8E-07 57.3 5.4 98 237-353 117-220 (336)
300 cd01573 modD_like ModD; Quinol 95.6 0.068 1.5E-06 51.6 9.3 93 237-352 171-264 (272)
301 TIGR02319 CPEP_Pphonmut carbox 95.6 0.39 8.5E-06 46.8 14.5 136 186-350 95-237 (294)
302 COG0284 PyrF Orotidine-5'-phos 95.6 0.32 7E-06 46.0 13.5 132 186-360 79-228 (240)
303 TIGR00674 dapA dihydrodipicoli 95.6 0.15 3.3E-06 49.3 11.7 136 172-345 15-157 (285)
304 PRK13957 indole-3-glycerol-pho 95.6 0.51 1.1E-05 44.8 14.7 149 186-361 64-245 (247)
305 cd00950 DHDPS Dihydrodipicolin 95.6 0.2 4.3E-06 48.4 12.4 132 172-340 17-156 (284)
306 PRK05265 pyridoxine 5'-phospha 95.5 0.18 4E-06 47.2 11.4 71 282-353 144-220 (239)
307 cd04727 pdxS PdxS is a subunit 95.5 0.23 5E-06 47.7 12.2 121 186-346 18-139 (283)
308 TIGR02321 Pphn_pyruv_hyd phosp 95.5 0.35 7.6E-06 47.1 13.7 156 186-364 25-203 (290)
309 PRK09250 fructose-bisphosphate 95.5 0.29 6.2E-06 48.6 13.1 143 189-354 152-326 (348)
310 TIGR02319 CPEP_Pphonmut carbox 95.5 0.3 6.4E-06 47.6 13.1 156 186-364 26-201 (294)
311 PRK03170 dihydrodipicolinate s 95.4 0.3 6.5E-06 47.4 13.1 130 172-338 18-155 (292)
312 COG0134 TrpC Indole-3-glycerol 95.4 1 2.2E-05 42.8 16.1 150 186-361 69-251 (254)
313 PRK05718 keto-hydroxyglutarate 95.4 0.38 8.2E-06 44.7 13.0 48 306-355 143-191 (212)
314 COG0214 SNZ1 Pyridoxine biosyn 95.4 0.23 4.9E-06 46.3 11.1 48 311-359 200-250 (296)
315 PRK11750 gltB glutamate syntha 95.3 0.073 1.6E-06 61.4 9.4 104 234-350 981-1100(1485)
316 COG0329 DapA Dihydrodipicolina 95.3 0.34 7.4E-06 47.4 13.1 124 183-337 25-157 (299)
317 COG0069 GltB Glutamate synthas 95.3 0.093 2E-06 54.1 9.3 114 219-351 279-408 (485)
318 cd00331 IGPS Indole-3-glycerol 95.2 0.065 1.4E-06 49.7 7.4 81 273-359 32-113 (217)
319 cd00954 NAL N-Acetylneuraminic 95.2 0.34 7.3E-06 47.0 12.6 129 172-336 17-154 (288)
320 PLN02858 fructose-bisphosphate 95.2 0.84 1.8E-05 53.6 17.7 137 187-349 1183-1334(1378)
321 TIGR01182 eda Entner-Doudoroff 95.2 0.092 2E-06 48.5 8.0 84 270-364 18-103 (204)
322 TIGR02127 pyrF_sub2 orotidine 95.1 2.6 5.6E-05 40.4 18.1 147 176-360 96-258 (261)
323 cd06556 ICL_KPHMT Members of t 95.1 0.26 5.6E-06 46.7 11.1 133 184-361 90-230 (240)
324 cd03313 enolase Enolase: Enola 95.1 0.18 3.8E-06 51.6 10.8 101 237-345 213-334 (408)
325 TIGR00222 panB 3-methyl-2-oxob 95.1 0.33 7.2E-06 46.5 11.7 78 271-363 159-236 (263)
326 PRK04147 N-acetylneuraminate l 95.0 0.38 8.3E-06 46.8 12.5 129 172-336 20-156 (293)
327 PRK13802 bifunctional indole-3 95.0 0.5 1.1E-05 51.4 14.4 149 186-360 73-254 (695)
328 PRK06559 nicotinate-nucleotide 95.0 0.16 3.5E-06 49.2 9.5 108 218-350 160-273 (290)
329 cd02809 alpha_hydroxyacid_oxid 94.9 0.3 6.4E-06 47.7 11.4 92 241-345 108-199 (299)
330 PF07745 Glyco_hydro_53: Glyco 94.9 1.5 3.4E-05 43.4 16.4 173 106-323 57-235 (332)
331 PLN02460 indole-3-glycerol-pho 94.9 0.42 9.2E-06 47.3 12.4 150 186-361 142-332 (338)
332 TIGR03249 KdgD 5-dehydro-4-deo 94.9 0.42 9.1E-06 46.6 12.4 128 172-336 22-153 (296)
333 PRK00077 eno enolase; Provisio 94.9 0.2 4.3E-06 51.5 10.5 101 237-345 216-334 (425)
334 PRK05718 keto-hydroxyglutarate 94.9 0.12 2.6E-06 48.1 8.0 81 270-361 25-106 (212)
335 cd00951 KDGDH 5-dehydro-4-deox 94.9 0.56 1.2E-05 45.5 13.1 128 172-336 17-148 (289)
336 PRK11320 prpB 2-methylisocitra 94.9 0.83 1.8E-05 44.5 14.1 137 185-349 95-237 (292)
337 PRK03620 5-dehydro-4-deoxygluc 94.8 0.24 5.2E-06 48.5 10.5 126 172-335 24-154 (303)
338 TIGR01305 GMP_reduct_1 guanosi 94.8 0.097 2.1E-06 51.6 7.4 68 274-346 108-178 (343)
339 PRK00311 panB 3-methyl-2-oxobu 94.8 0.3 6.4E-06 46.9 10.6 78 271-363 160-237 (264)
340 PRK06015 keto-hydroxyglutarate 94.7 0.14 2.9E-06 47.2 8.0 81 270-361 14-95 (201)
341 TIGR02313 HpaI-NOT-DapA 2,4-di 94.7 0.58 1.2E-05 45.6 12.9 129 172-336 17-153 (294)
342 KOG2550 IMP dehydrogenase/GMP 94.7 0.19 4.2E-06 50.4 9.3 127 190-356 257-393 (503)
343 TIGR02317 prpB methylisocitrat 94.7 0.8 1.7E-05 44.5 13.6 154 186-364 23-197 (285)
344 cd00952 CHBPH_aldolase Trans-o 94.7 0.27 6E-06 48.2 10.6 127 172-335 25-160 (309)
345 PF00701 DHDPS: Dihydrodipicol 94.6 0.29 6.4E-06 47.4 10.6 122 185-336 24-153 (289)
346 TIGR03569 NeuB_NnaB N-acetylne 94.6 0.47 1E-05 47.0 12.0 124 191-341 24-161 (329)
347 PF00478 IMPDH: IMP dehydrogen 94.6 0.13 2.9E-06 51.2 8.1 67 274-346 109-177 (352)
348 cd08205 RuBisCO_IV_RLP Ribulos 94.6 0.5 1.1E-05 47.6 12.4 87 183-295 146-233 (367)
349 PRK11320 prpB 2-methylisocitra 94.6 0.9 2E-05 44.3 13.7 155 186-363 27-201 (292)
350 PF01081 Aldolase: KDPG and KH 94.6 0.095 2.1E-06 48.0 6.5 81 271-362 19-100 (196)
351 cd02810 DHOD_DHPD_FMN Dihydroo 94.6 0.65 1.4E-05 44.9 12.7 85 251-346 100-196 (289)
352 PRK07259 dihydroorotate dehydr 94.5 0.65 1.4E-05 45.3 12.7 139 187-345 27-188 (301)
353 PLN02424 ketopantoate hydroxym 94.5 0.42 9.1E-06 47.1 11.2 80 271-363 181-263 (332)
354 PRK06543 nicotinate-nucleotide 94.5 0.32 6.9E-06 47.1 10.2 111 218-353 152-272 (281)
355 cd04739 DHOD_like Dihydroorota 94.5 1.9 4.2E-05 42.6 16.0 147 186-345 26-194 (325)
356 PRK13397 3-deoxy-7-phosphohept 94.5 4.6 0.0001 38.4 21.5 204 33-347 3-220 (250)
357 COG0800 Eda 2-keto-3-deoxy-6-p 94.5 0.17 3.6E-06 46.7 7.8 80 270-360 23-103 (211)
358 PRK09722 allulose-6-phosphate 94.4 1.3 2.9E-05 41.5 14.0 129 178-355 71-208 (229)
359 COG0135 TrpF Phosphoribosylant 94.4 1.4 3.1E-05 40.7 13.9 118 190-353 69-190 (208)
360 PF00682 HMGL-like: HMGL-like 94.4 1.1 2.4E-05 41.9 13.5 118 100-297 101-218 (237)
361 PF13714 PEP_mutase: Phosphoen 94.3 0.65 1.4E-05 43.9 11.8 154 186-362 19-189 (238)
362 cd04742 NPD_FabD 2-Nitropropan 94.3 0.17 3.7E-06 51.6 8.3 74 278-353 169-255 (418)
363 PRK06015 keto-hydroxyglutarate 94.3 1.5 3.3E-05 40.4 13.8 48 306-355 132-180 (201)
364 cd06557 KPHMT-like Ketopantoat 94.3 0.42 9E-06 45.7 10.4 77 271-362 157-233 (254)
365 PF03102 NeuB: NeuB family; I 94.3 0.31 6.6E-06 46.2 9.4 138 190-353 3-153 (241)
366 KOG1436 Dihydroorotate dehydro 94.3 0.4 8.6E-06 46.7 10.1 102 251-362 254-377 (398)
367 PRK06106 nicotinate-nucleotide 94.3 0.67 1.5E-05 44.9 11.8 106 218-350 157-270 (281)
368 PF01729 QRPTase_C: Quinolinat 94.1 0.31 6.7E-06 43.7 8.6 111 219-352 44-161 (169)
369 TIGR02814 pfaD_fam PfaD family 94.1 0.21 4.6E-06 51.3 8.4 36 317-353 224-260 (444)
370 PRK12330 oxaloacetate decarbox 94.0 0.89 1.9E-05 47.6 13.0 125 181-344 98-230 (499)
371 PLN02274 inosine-5'-monophosph 94.0 0.09 1.9E-06 55.2 5.8 67 274-345 249-316 (505)
372 TIGR03586 PseI pseudaminic aci 93.8 1 2.2E-05 44.7 12.4 132 187-345 21-167 (327)
373 PRK01222 N-(5'-phosphoribosyl) 93.8 3 6.6E-05 38.6 14.9 38 316-353 153-190 (210)
374 cd00453 FTBP_aldolase_II Fruct 93.8 7.4 0.00016 38.6 18.1 134 187-346 101-272 (340)
375 PRK02227 hypothetical protein; 93.8 2.4 5.1E-05 40.0 14.0 128 186-346 10-151 (238)
376 PF03437 BtpA: BtpA family; I 93.7 2.9 6.3E-05 39.9 14.8 160 177-364 23-200 (254)
377 cd00953 KDG_aldolase KDG (2-ke 93.7 1.7 3.6E-05 42.0 13.6 127 171-337 15-148 (279)
378 PRK06978 nicotinate-nucleotide 93.6 0.74 1.6E-05 44.8 10.8 112 218-354 169-285 (294)
379 TIGR01334 modD putative molybd 93.6 0.75 1.6E-05 44.5 10.8 95 236-353 175-270 (277)
380 cd04743 NPD_PKS 2-Nitropropane 93.6 0.36 7.7E-06 47.6 8.7 81 276-356 114-212 (320)
381 cd00377 ICL_PEPM Members of th 93.5 2.4 5.3E-05 40.1 14.1 154 186-363 19-195 (243)
382 TIGR00683 nanA N-acetylneurami 93.5 1.2 2.6E-05 43.3 12.3 129 172-336 17-154 (290)
383 COG0434 SgcQ Predicted TIM-bar 93.5 0.69 1.5E-05 43.4 9.8 139 186-351 98-237 (263)
384 cd00429 RPE Ribulose-5-phospha 93.4 1.3 2.8E-05 40.3 11.7 121 184-346 13-134 (211)
385 PF01081 Aldolase: KDPG and KH 93.3 0.37 8.1E-06 44.2 7.9 46 306-352 136-182 (196)
386 PRK09427 bifunctional indole-3 93.3 1.8 4E-05 44.8 13.9 148 186-361 73-253 (454)
387 cd00381 IMPDH IMPDH: The catal 93.3 0.27 5.9E-06 48.6 7.5 66 274-345 95-162 (325)
388 PRK06552 keto-hydroxyglutarate 93.3 0.39 8.4E-06 44.7 8.0 84 270-364 23-111 (213)
389 PRK09016 quinolinate phosphori 93.2 0.53 1.2E-05 45.9 9.2 111 218-353 172-287 (296)
390 cd04740 DHOD_1B_like Dihydroor 93.2 2.8 6.2E-05 40.6 14.5 84 251-345 91-185 (296)
391 KOG3111 D-ribulose-5-phosphate 93.2 1 2.2E-05 40.9 10.1 133 173-355 71-206 (224)
392 PRK08385 nicotinate-nucleotide 93.2 0.96 2.1E-05 43.8 10.8 109 219-350 148-263 (278)
393 PRK07107 inosine 5-monophospha 93.1 0.21 4.6E-06 52.3 6.7 68 273-345 242-311 (502)
394 PRK07896 nicotinate-nucleotide 93.1 1 2.3E-05 43.8 11.0 111 218-351 163-279 (289)
395 PRK06096 molybdenum transport 93.1 1.2 2.7E-05 43.1 11.5 111 218-351 150-269 (284)
396 PRK07114 keto-hydroxyglutarate 93.1 1.1 2.3E-05 42.0 10.6 45 306-351 146-193 (222)
397 PRK12581 oxaloacetate decarbox 93.1 1 2.2E-05 46.7 11.5 135 181-355 106-251 (468)
398 PLN02495 oxidoreductase, actin 93.0 1.3 2.8E-05 45.0 11.9 106 234-349 99-217 (385)
399 PLN02417 dihydrodipicolinate s 93.0 1.3 2.7E-05 42.9 11.5 127 172-336 18-151 (280)
400 PRK06843 inosine 5-monophospha 92.9 0.34 7.3E-06 49.3 7.6 68 274-346 154-222 (404)
401 PRK05581 ribulose-phosphate 3- 92.9 1.4 3.1E-05 40.5 11.3 121 184-346 17-138 (220)
402 PTZ00314 inosine-5'-monophosph 92.7 0.39 8.5E-06 50.3 8.1 66 274-345 242-309 (495)
403 cd07944 DRE_TIM_HOA_like 4-hyd 92.7 3.2 7E-05 39.8 13.8 115 104-298 106-221 (266)
404 PRK13305 sgbH 3-keto-L-gulonat 92.7 0.18 3.9E-06 47.1 4.9 52 308-360 152-205 (218)
405 TIGR01306 GMP_reduct_2 guanosi 92.6 0.41 8.8E-06 47.2 7.5 67 275-346 96-165 (321)
406 KOG0538 Glycolate oxidase [Ene 92.5 0.34 7.4E-06 47.0 6.6 98 237-351 212-312 (363)
407 cd08210 RLP_RrRLP Ribulose bis 92.5 1.5 3.1E-05 44.2 11.4 86 183-294 141-227 (364)
408 PRK09140 2-dehydro-3-deoxy-6-p 92.5 0.58 1.2E-05 43.3 8.0 82 270-362 20-103 (206)
409 PF04476 DUF556: Protein of un 92.4 1.6 3.5E-05 40.9 10.8 129 186-347 10-152 (235)
410 cd00452 KDPG_aldolase KDPG and 92.4 0.68 1.5E-05 42.0 8.3 81 270-361 14-95 (190)
411 cd06557 KPHMT-like Ketopantoat 92.2 5 0.00011 38.3 14.1 147 186-365 22-194 (254)
412 PRK07807 inosine 5-monophospha 92.1 0.4 8.8E-06 50.0 7.2 68 274-346 228-296 (479)
413 cd07948 DRE_TIM_HCS Saccharomy 92.1 1.3 2.9E-05 42.4 10.2 134 188-343 76-213 (262)
414 PRK07114 keto-hydroxyglutarate 92.1 0.68 1.5E-05 43.3 7.9 84 270-364 25-114 (222)
415 TIGR00259 thylakoid_BtpA membr 92.1 6.4 0.00014 37.7 14.6 159 175-361 20-196 (257)
416 PRK08195 4-hyroxy-2-oxovalerat 92.0 3.7 8.1E-05 40.9 13.7 110 107-296 115-225 (337)
417 COG1830 FbaB DhnA-type fructos 92.0 4.5 9.7E-05 38.7 13.3 77 271-357 165-248 (265)
418 PRK05096 guanosine 5'-monophos 92.0 1.1 2.4E-05 44.3 9.6 64 275-343 110-176 (346)
419 COG2876 AroA 3-deoxy-D-arabino 92.0 11 0.00023 36.1 15.7 85 251-345 154-248 (286)
420 PRK12595 bifunctional 3-deoxy- 91.9 15 0.00033 36.9 21.9 106 237-356 215-330 (360)
421 PRK13398 3-deoxy-7-phosphohept 91.7 13 0.00028 35.8 20.0 102 237-350 124-235 (266)
422 TIGR01302 IMP_dehydrog inosine 91.6 0.55 1.2E-05 48.6 7.5 68 274-346 225-293 (450)
423 PF13714 PEP_mutase: Phosphoen 91.6 5.6 0.00012 37.6 13.6 135 185-350 87-223 (238)
424 TIGR01232 lacD tagatose 1,6-di 91.5 7.3 0.00016 38.3 14.6 148 188-353 111-283 (325)
425 cd07943 DRE_TIM_HOA 4-hydroxy- 91.5 6.3 0.00014 37.6 14.2 112 106-297 111-222 (263)
426 PRK12331 oxaloacetate decarbox 91.5 2.2 4.8E-05 44.2 11.7 136 182-355 98-242 (448)
427 PF04309 G3P_antiterm: Glycero 91.5 0.14 3.1E-06 46.0 2.6 64 277-350 109-173 (175)
428 TIGR03128 RuMP_HxlA 3-hexulose 91.4 4.4 9.5E-05 36.9 12.6 117 187-348 16-135 (206)
429 PRK00311 panB 3-methyl-2-oxobu 91.4 5.5 0.00012 38.3 13.5 147 186-365 25-197 (264)
430 cd02922 FCB2_FMN Flavocytochro 91.4 2.6 5.7E-05 42.1 11.7 41 305-346 201-241 (344)
431 cd07940 DRE_TIM_IPMS 2-isoprop 91.3 7.3 0.00016 37.3 14.5 116 102-297 109-226 (268)
432 COG0413 PanB Ketopantoate hydr 91.3 2.7 5.8E-05 40.0 10.8 134 184-362 95-236 (268)
433 TIGR01417 PTS_I_fam phosphoeno 91.2 24 0.00051 37.8 20.7 220 67-351 280-530 (565)
434 PF00809 Pterin_bind: Pterin b 91.1 3.7 8.1E-05 37.9 11.9 60 185-257 21-80 (210)
435 PLN02716 nicotinate-nucleotide 91.1 2.8 6E-05 41.1 11.2 119 218-350 163-294 (308)
436 TIGR02320 PEP_mutase phosphoen 91.0 5.4 0.00012 38.8 13.2 151 186-362 19-204 (285)
437 TIGR02321 Pphn_pyruv_hyd phosp 90.9 17 0.00036 35.5 18.8 138 186-349 93-238 (290)
438 PRK05437 isopentenyl pyrophosp 90.9 2.1 4.5E-05 42.9 10.6 102 236-346 107-217 (352)
439 PRK14041 oxaloacetate decarbox 90.8 2.1 4.6E-05 44.5 10.8 137 181-355 96-241 (467)
440 COG0800 Eda 2-keto-3-deoxy-6-p 90.8 3.2 6.9E-05 38.4 10.7 32 318-350 154-185 (211)
441 PRK02048 4-hydroxy-3-methylbut 90.8 14 0.0003 39.4 16.6 214 32-291 10-234 (611)
442 cd02940 DHPD_FMN Dihydropyrimi 90.7 12 0.00026 36.4 15.6 75 270-345 111-199 (299)
443 cd03332 LMO_FMN L-Lactate 2-mo 90.7 2.9 6.3E-05 42.3 11.4 41 305-346 241-281 (383)
444 COG1794 RacX Aspartate racemas 90.6 1.5 3.3E-05 40.8 8.5 69 226-294 8-84 (230)
445 PRK06852 aldolase; Validated 90.6 8.7 0.00019 37.7 14.2 151 103-336 150-301 (304)
446 PRK08318 dihydropyrimidine deh 90.5 5.8 0.00013 40.6 13.7 74 271-344 112-198 (420)
447 cd04726 KGPDC_HPS 3-Keto-L-gul 90.5 4.3 9.4E-05 36.7 11.6 90 236-346 40-133 (202)
448 cd00003 PNPsynthase Pyridoxine 90.5 2.8 6E-05 39.4 10.2 121 59-207 68-190 (234)
449 PRK05458 guanosine 5'-monophos 90.5 0.74 1.6E-05 45.6 6.8 68 274-346 98-168 (326)
450 COG1830 FbaB DhnA-type fructos 90.3 4.6 0.0001 38.6 11.7 112 101-290 124-235 (265)
451 KOG0134 NADH:flavin oxidoreduc 90.3 0.055 1.2E-06 54.3 -1.2 106 31-136 17-134 (400)
452 KOG1606 Stationary phase-induc 90.2 0.56 1.2E-05 43.1 5.2 54 307-361 197-253 (296)
453 COG1954 GlpP Glycerol-3-phosph 90.2 0.82 1.8E-05 40.7 6.1 59 278-346 114-173 (181)
454 PF01680 SOR_SNZ: SOR/SNZ fami 90.2 4.2 9.2E-05 36.6 10.5 118 186-343 24-142 (208)
455 TIGR01361 DAHP_synth_Bsub phos 90.2 18 0.00038 34.7 15.8 106 237-354 122-237 (260)
456 PF02548 Pantoate_transf: Keto 90.1 3.7 8E-05 39.3 10.9 101 185-325 96-205 (261)
457 TIGR00559 pdxJ pyridoxine 5'-p 90.1 3.3 7.1E-05 39.0 10.3 117 59-207 68-190 (237)
458 PRK14040 oxaloacetate decarbox 90.0 5 0.00011 43.1 13.1 128 190-355 104-243 (593)
459 cd07939 DRE_TIM_NifV Streptomy 90.0 13 0.00029 35.3 14.9 132 102-314 105-236 (259)
460 TIGR03217 4OH_2_O_val_ald 4-hy 89.9 8.3 0.00018 38.3 13.8 131 104-314 111-242 (333)
461 PLN00191 enolase 89.9 1.9 4.2E-05 44.7 9.6 68 270-345 296-366 (457)
462 COG0854 PdxJ Pyridoxal phospha 89.9 2.7 5.9E-05 39.0 9.4 72 282-353 142-222 (243)
463 PLN02979 glycolate oxidase 89.9 3.9 8.5E-05 41.0 11.3 41 305-346 211-251 (366)
464 PF03932 CutC: CutC family; I 89.8 5.9 0.00013 36.5 11.7 131 173-345 66-198 (201)
465 PRK15452 putative protease; Pr 89.7 9.6 0.00021 39.5 14.5 126 186-349 13-144 (443)
466 COG3684 LacD Tagatose-1,6-bisp 89.6 10 0.00022 36.1 13.1 138 188-352 116-269 (306)
467 PRK05286 dihydroorotate dehydr 89.5 6.9 0.00015 39.0 13.0 151 186-347 72-246 (344)
468 PF00682 HMGL-like: HMGL-like 89.5 2.1 4.6E-05 39.9 8.9 139 186-346 70-213 (237)
469 PRK11858 aksA trans-homoaconit 89.5 3.4 7.4E-05 41.8 10.9 133 189-343 81-217 (378)
470 PRK09282 pyruvate carboxylase 89.5 3.4 7.3E-05 44.4 11.3 139 181-357 97-244 (592)
471 TIGR01303 IMP_DH_rel_1 IMP deh 89.5 0.98 2.1E-05 47.1 7.1 66 274-344 226-292 (475)
472 PF00834 Ribul_P_3_epim: Ribul 89.5 0.94 2E-05 41.7 6.2 116 193-352 77-200 (201)
473 PLN02746 hydroxymethylglutaryl 89.4 4.4 9.5E-05 40.5 11.4 143 187-345 125-272 (347)
474 PRK14042 pyruvate carboxylase 89.4 2.7 5.9E-05 45.0 10.5 134 181-355 97-242 (596)
475 PRK00366 ispG 4-hydroxy-3-meth 89.3 1.3 2.8E-05 44.0 7.3 77 268-352 38-114 (360)
476 TIGR02660 nifV_homocitr homoci 89.2 3.3 7.1E-05 41.7 10.5 132 190-343 79-214 (365)
477 cd00405 PRAI Phosphoribosylant 89.0 6.6 0.00014 35.8 11.6 114 186-347 9-128 (203)
478 PRK12399 tagatose 1,6-diphosph 89.0 8.9 0.00019 37.7 12.8 149 188-353 110-282 (324)
479 TIGR03326 rubisco_III ribulose 89.0 13 0.00028 38.1 14.6 132 183-348 160-307 (412)
480 cd07945 DRE_TIM_CMS Leptospira 88.8 18 0.00039 35.0 14.9 118 101-297 109-228 (280)
481 PLN02363 phosphoribosylanthran 88.7 15 0.00033 35.1 14.1 37 317-353 199-235 (256)
482 TIGR01036 pyrD_sub2 dihydrooro 88.7 7.8 0.00017 38.5 12.6 154 186-347 69-245 (335)
483 cd07939 DRE_TIM_NifV Streptomy 88.5 4.6 9.9E-05 38.5 10.5 132 190-343 76-211 (259)
484 cd00958 DhnA Class I fructose- 88.4 15 0.00032 34.3 13.7 112 102-293 104-215 (235)
485 PF05853 DUF849: Prokaryotic p 88.4 3.1 6.8E-05 40.1 9.3 55 184-255 27-81 (272)
486 cd07945 DRE_TIM_CMS Leptospira 88.3 5.2 0.00011 38.7 10.9 138 188-344 79-221 (280)
487 PRK08673 3-deoxy-7-phosphohept 88.3 29 0.00063 34.6 19.9 88 251-348 202-299 (335)
488 cd04722 TIM_phosphate_binding 88.3 6.9 0.00015 34.3 11.0 133 183-350 12-147 (200)
489 cd04737 LOX_like_FMN L-Lactate 88.2 7.9 0.00017 38.8 12.3 48 305-353 209-260 (351)
490 PLN02493 probable peroxisomal 88.2 6 0.00013 39.9 11.4 41 305-346 212-252 (367)
491 KOG2550 IMP dehydrogenase/GMP 88.1 1.1 2.4E-05 45.2 6.0 74 273-351 251-327 (503)
492 cd07938 DRE_TIM_HMGL 3-hydroxy 88.0 7.7 0.00017 37.4 11.8 138 188-344 78-223 (274)
493 PF01487 DHquinase_I: Type I 3 88.0 4.6 9.9E-05 37.5 10.0 131 184-350 11-154 (224)
494 PRK05567 inosine 5'-monophosph 87.9 1.5 3.3E-05 45.8 7.4 68 274-346 229-297 (486)
495 TIGR02090 LEU1_arch isopropylm 87.8 4.3 9.2E-05 40.8 10.3 135 187-343 75-213 (363)
496 TIGR03849 arch_ComA phosphosul 87.8 16 0.00034 34.6 13.2 82 183-293 71-155 (237)
497 COG0352 ThiE Thiamine monophos 87.8 9.6 0.00021 35.4 11.7 108 186-349 24-134 (211)
498 cd03174 DRE_TIM_metallolyase D 87.7 4.8 0.0001 38.0 10.2 140 186-345 77-221 (265)
499 cd07937 DRE_TIM_PC_TC_5S Pyruv 87.6 27 0.00059 33.6 16.7 80 184-297 150-229 (275)
500 TIGR01037 pyrD_sub1_fam dihydr 87.5 13 0.00029 36.0 13.3 85 251-345 92-188 (300)
No 1
>PLN02411 12-oxophytodienoate reductase
Probab=100.00 E-value=8e-89 Score=682.73 Aligned_cols=360 Identities=57% Similarity=0.993 Sum_probs=307.3
Q ss_pred CccCCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCCCCCCHHHHhh
Q 015862 29 VILFLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEA 108 (399)
Q Consensus 29 ~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~ 108 (399)
+++||+|++||+++|||||||+||+++++.||.||+.+++||++||+|+||||+|+++|++.+..+++++++|+|+++++
T Consensus 9 ~~~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~ 88 (391)
T PLN02411 9 NETLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEA 88 (391)
T ss_pred chhcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHH
Confidence 46899999999999999999999999888789999999999999999459999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCccc---ccCCCcccCCCCCCCCChhHHHHHHHHH
Q 015862 109 WKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQI---RANGVDVAQFTPPRRLRTDEIPQIVNDF 185 (399)
Q Consensus 109 ~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~---~~~g~~~~~~~~p~~mt~~eI~~ii~~f 185 (399)
||+++++||++|+++++||+|+||++.+.....+..+++||.++..... ...+. ......|++||.+||+++|++|
T Consensus 89 ~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~pr~mt~~eI~~ii~~f 167 (391)
T PLN02411 89 WKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGS-YGKYPKPRALETSEIPEVVEHY 167 (391)
T ss_pred HHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCcc-ccCCCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999876432234566788765432100 00000 0013468999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
++||+||++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||++||+++|+||||+.+++.+.
T Consensus 168 ~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~ 247 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDA 247 (391)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999986554432
Q ss_pred CCCChHHHHHHHHHhhhhh------CceEEEEeCCCccccc-----ccC---CCchhhHHHHhhcCCcEEEeCCCCHHHH
Q 015862 266 GDSNPEALGLYMAESLNKY------GILYCHMVEPRMKTRE-----EKS---ECPHSLLPMRKAFKGTFLVAGGYDREDG 331 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~------Gvd~l~v~~~~~~~~~-----~~~---~~~~~~~~ir~~~~~pvi~~Ggit~~~a 331 (399)
...++.+++..+++.|++. |+||||++.+.+.... ... ....+++.||+.+++||+++|++++++|
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i~~~~a 327 (391)
T PLN02411 248 TDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGFTRELG 327 (391)
T ss_pred CCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCCCHHHH
Confidence 2344567788888888864 5999999987542110 011 1224678899999999999999998999
Q ss_pred HHHHHcCCCcEEEechHHhhCCcHHHHHHhCCCCCCCCcccccccCCCCCccccCCCC
Q 015862 332 NKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYTDYPFLN 389 (399)
Q Consensus 332 ~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (399)
+++|++|.+|+|+|||++|+||||++|+++|+++++++..+||+.++..||+|||+++
T Consensus 328 ~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g~~l~~~~~~~~~~~~~~~gy~~~p~~~ 385 (391)
T PLN02411 328 MQAVQQGDADLVSYGRLFISNPDLVLRFKLNAPLNKYIRKTFYTQDPVVGYTDYPFLS 385 (391)
T ss_pred HHHHHcCCCCEEEECHHHHhCccHHHHHhcCCCCCCCChhheeCCCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999734456999999875
No 2
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=2.6e-87 Score=661.19 Aligned_cols=325 Identities=38% Similarity=0.629 Sum_probs=292.0
Q ss_pred CccCCCccccCCeeeCCceeeCCCCCCCC-CCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHH
Q 015862 29 VILFLTPYKMGNFNLSHRVVLAPLTRQRS-YNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQV 106 (399)
Q Consensus 29 ~~~Lf~P~~ig~~~lkNRiv~apm~~~~~-~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i 106 (399)
+++||+|++||+++|||||||+||+++++ .+|.||+.++.||++||+ |+||||+|.+.|++.++.+++++++|+|+++
T Consensus 3 ~~~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i 82 (363)
T COG1902 3 MPKLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQI 82 (363)
T ss_pred ccccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHh
Confidence 36799999999999999999999999998 689999999999999999 7999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHH
Q 015862 107 EAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFR 186 (399)
Q Consensus 107 ~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~ 186 (399)
++|++++++||++|++|++||+|+||++..... ....+++||+++.... ....|++||++||+++|++|+
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~-~~~~~vapS~~~~~~~---------~~~~pr~mt~~eI~~ii~~f~ 152 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAGRKARASHP-WLPSAVAPSAIPAPGG---------RRATPRELTEEEIEEVIEDFA 152 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCccccccccc-CCCcccCCCccccccC---------CCCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999998754331 1246789998876531 146799999999999999999
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMES 265 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~ 265 (399)
+||+||++|||||||||++|||||+|||||.+|+|||+||||+|||+||++||+++||+++|++ +|++|||+.+...+
T Consensus 153 ~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~- 231 (363)
T COG1902 153 RAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDG- 231 (363)
T ss_pred HHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999998 69999999754222
Q ss_pred CCCChHHHHHHHHHhhhhhC-ceEEEEeCCCccccc----c-cCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcC
Q 015862 266 GDSNPEALGLYMAESLNKYG-ILYCHMVEPRMKTRE----E-KSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEG 338 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~G-vd~l~v~~~~~~~~~----~-~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 338 (399)
.+.+.+++.++++.|++.| +||||++.+...... . ...+..++..+|+.+.+|||++|++ +++.|+++|++|
T Consensus 232 -~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 232 -GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred -CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 2456888999999999999 799999988653211 1 2234467788999999999999998 899999999999
Q ss_pred CCcEEEechHHhhCCcHHHHHHhCCCC
Q 015862 339 RADLVVYGRLFLANPDLPRRFELNAPL 365 (399)
Q Consensus 339 ~~D~V~~gR~~iadPdl~~k~~~g~~~ 365 (399)
.+|+|+|||++++||+|++|+++|++.
T Consensus 311 ~aDlVa~gR~~ladP~~~~k~~~g~~~ 337 (363)
T COG1902 311 RADLVAMGRPFLADPDLVLKAAEGREL 337 (363)
T ss_pred CCCEEEechhhhcCccHHHHHHcCCCc
Confidence 999999999999999999999999985
No 3
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=8.3e-87 Score=662.38 Aligned_cols=355 Identities=43% Similarity=0.701 Sum_probs=305.1
Q ss_pred ccCCCccccCCeeeCCceeeCCCCCCCC--CCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCCCCCCHHHHh
Q 015862 30 ILFLTPYKMGNFNLSHRVVLAPLTRQRS--YNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTPSIWTKEQVE 107 (399)
Q Consensus 30 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~--~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~ 107 (399)
++||+|++||+++|||||+|+||+++.+ .+|.||+.+++||++|| |+||||+|+++|++.+...++++++|+|++++
T Consensus 1 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~ 79 (362)
T PRK10605 1 EKLFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIA 79 (362)
T ss_pred CCCCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHH
Confidence 3699999999999999999999987554 56799999999999999 79999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcc-cccC--CC-cccCCCCCCCCChhHHHHHHH
Q 015862 108 AWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQ-IRAN--GV-DVAQFTPPRRLRTDEIPQIVN 183 (399)
Q Consensus 108 ~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~-~~~~--g~-~~~~~~~p~~mt~~eI~~ii~ 183 (399)
+||+++|+||++|+++++||+|+||++.......+..+++||+++.... ...+ +. .......|++||.+||+++++
T Consensus 80 ~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 159 (362)
T PRK10605 80 AWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVN 159 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHH
Confidence 9999999999999999999999999986544323456799998765310 0000 00 000134689999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
+|++||++|++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||++||+++|++|||+.+.+.
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999965332
Q ss_pred CCCCCChHHH-HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEAL-GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~-~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~ 342 (399)
...++.+.++ ++++++.|++.|+|||||+.+.+.. .......+.+.||+.+++||+++|++|++.|+++|++|.||+
T Consensus 240 ~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~--~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 240 NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG--GEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDA 317 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC--CccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCE
Confidence 2222345566 7999999999999999998764321 112234577889999999999999999999999999999999
Q ss_pred EEechHHhhCCcHHHHHHhCCCCCCCCcccccccCCCCCccccCCC
Q 015862 343 VVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYTDYPFL 388 (399)
Q Consensus 343 V~~gR~~iadPdl~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (399)
|+|||++++||||++|+++|+++++.+..+|++ .+..||++||.+
T Consensus 318 V~~gR~~iadPd~~~k~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 362 (362)
T PRK10605 318 VAFGRDYIANPDLVARLQRKAELNPQRPESFYG-GGAEGYTDYPTL 362 (362)
T ss_pred EEECHHhhhCccHHHHHhcCCCCCCCChhhhcC-CCCCCCcCCCCC
Confidence 999999999999999999999999988888887 556799999843
No 4
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=5.1e-83 Score=630.23 Aligned_cols=336 Identities=54% Similarity=0.902 Sum_probs=296.1
Q ss_pred cCCCccccCCeeeCCceeeCCCCCCCC-CCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhh
Q 015862 31 LFLTPYKMGNFNLSHRVVLAPLTRQRS-YNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAW 109 (399)
Q Consensus 31 ~Lf~P~~ig~~~lkNRiv~apm~~~~~-~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~ 109 (399)
+||+|++||+++|||||+|+||+++++ .+|.||+.+++||++||+| ||||+|+++|++.|...++++++|+|+++++|
T Consensus 1 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~l 79 (338)
T cd02933 1 KLFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGW 79 (338)
T ss_pred CCCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHH
Confidence 599999999999999999999998887 7899999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHH
Q 015862 110 KPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAA 189 (399)
Q Consensus 110 ~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA 189 (399)
|+++|+||++|+++++||+|+||++.......+.++++||.++....... .........|++||.+||++++++|++||
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~-~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 158 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFT-PAGKVPYPTPRALTTEEIPGIVADFRQAA 158 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCccccc-ccccCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987543212446799998765421000 00000234689999999999999999999
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~ 269 (399)
++|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++|.++|+||+|+.+...+..++.
T Consensus 159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999879999999866444333345
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHH
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
+.+++.++++.|++.|+|+|+|+.+.+... ....++++++.||+++++||+++|++++++|+++|++|.||+|+|||++
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ 317 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPF 317 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhh
Confidence 788899999999999999999987754322 2445678899999999999999999999999999999999999999999
Q ss_pred hhCCcHHHHHHhCCCCCCCC
Q 015862 350 LANPDLPRRFELNAPLNKYN 369 (399)
Q Consensus 350 iadPdl~~k~~~g~~~~~~~ 369 (399)
++||||++|+++|+++..++
T Consensus 318 ladP~~~~k~~~g~~~~~~~ 337 (338)
T cd02933 318 IANPDLVERLKNGAPLNEYD 337 (338)
T ss_pred hhCcCHHHHHhcCCCCCCCC
Confidence 99999999999999988765
No 5
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=3.5e-83 Score=633.62 Aligned_cols=324 Identities=39% Similarity=0.643 Sum_probs=265.6
Q ss_pred cCCCccccCCeeeCCceeeCCCCCCCC-CCC-CCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHh
Q 015862 31 LFLTPYKMGNFNLSHRVVLAPLTRQRS-YNN-VPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVE 107 (399)
Q Consensus 31 ~Lf~P~~ig~~~lkNRiv~apm~~~~~-~~G-~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~ 107 (399)
+||+|++||+++|||||||+||+++++ .+| .|++.+++||++||+ |+||||+|+++|++.+...++++++|+|++++
T Consensus 1 ~LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~ 80 (341)
T PF00724_consen 1 KLFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIP 80 (341)
T ss_dssp GGGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHH
T ss_pred CCCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHH
Confidence 599999999999999999999999988 777 666799999999999 89999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCccc-ccCCCcccCCCCCCCCChhHHHHHHHHHH
Q 015862 108 AWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQI-RANGVDVAQFTPPRRLRTDEIPQIVNDFR 186 (399)
Q Consensus 108 ~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~-~~~g~~~~~~~~p~~mt~~eI~~ii~~f~ 186 (399)
+||+++++||++|+++++||+|+||++.+... ...+++||+....+.. .. ....+++||.+||+++|++|+
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~--~~~~~~psa~~~~~~~~~~------~~~~~~~mt~~eI~~ii~~f~ 152 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGRQANPEYS--GDPPVGPSAPSALPSPIKF------MGYPPREMTEEEIEEIIEDFA 152 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GGGSSGCCS--GGGCEESSCSSSSSTTTTE------TSCEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccceeeccccccccCcccC--CCCccCcccccccCccccc------CCCCCeeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999976552 3333677743321110 00 123458999999999999999
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMES 265 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~ 265 (399)
+||++|++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||++||++ +|++|||+++...+
T Consensus 153 ~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~- 231 (341)
T PF00724_consen 153 QAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEG- 231 (341)
T ss_dssp HHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTT-
T ss_pred HHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999988 59999999765543
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccc--------ccc--cCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHH
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKT--------REE--KSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKA 334 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~--------~~~--~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~ 334 (399)
..+.+++.++++.|++.|+|+++++...+.. +.. .....+.++.+|+.+++|||++|++ +++.|+++
T Consensus 232 --g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~ 309 (341)
T PF00724_consen 232 --GITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKA 309 (341)
T ss_dssp --SHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHH
Confidence 2456777889999999999988765443211 000 1122356888999999999999999 78889999
Q ss_pred HHcCCCcEEEechHHhhCCcHHHHHHhCCCC
Q 015862 335 IAEGRADLVVYGRLFLANPDLPRRFELNAPL 365 (399)
Q Consensus 335 L~~G~~D~V~~gR~~iadPdl~~k~~~g~~~ 365 (399)
|++|.||+|+|||++++|||||+|+++|++.
T Consensus 310 l~~g~~DlV~~gR~~ladPd~~~k~~~g~~d 340 (341)
T PF00724_consen 310 LEEGKADLVAMGRPLLADPDLPNKAREGRED 340 (341)
T ss_dssp HHTTSTSEEEESHHHHH-TTHHHHHHHTTGG
T ss_pred HhcCCceEeeccHHHHhCchHHHHHHcCCcc
Confidence 9999999999999999999999999999874
No 6
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=4.2e-81 Score=618.92 Aligned_cols=329 Identities=30% Similarity=0.449 Sum_probs=285.8
Q ss_pred CCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCC-CCCCCCCCCHHHHhhh
Q 015862 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQG-NPNTPSIWTKEQVEAW 109 (399)
Q Consensus 32 Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~-~~~~~~l~~d~~i~~~ 109 (399)
||+|++||+++|||||+|+||++..+.+|.||+.+++||++||+ |+||||+|++.|++.+.. .++++++|+|+++++|
T Consensus 1 Lf~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~ 80 (361)
T cd04747 1 LFTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGW 80 (361)
T ss_pred CCCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHH
Confidence 79999999999999999999998777889999999999999999 899999999999866544 4778899999999999
Q ss_pred HHHHHHHHHcCCeEEEecccCCCccCCCCC-CCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHH
Q 015862 110 KPIVDAVHAKGGIFFCQIRHVGRVSNRDYQ-PNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLA 188 (399)
Q Consensus 110 ~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~-~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~a 188 (399)
|+++|+||++|+++++||+|+||++..... ..+.++++||+++... ...|++||.+||++++++|++|
T Consensus 81 ~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~-----------~~~p~~mt~~eI~~ii~~f~~A 149 (361)
T cd04747 81 KKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPG-----------KPVGREMTEADIDDVIAAFARA 149 (361)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCC-----------CCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998864321 1234578999876431 3458999999999999999999
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCC-C
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMES-G 266 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~-~ 266 (399)
|++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||+|+++..... .
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~ 229 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTAR 229 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999988 799999985321111 1
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-------------------C
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-------------------D 327 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-------------------t 327 (399)
++.+.+++.++++.|++.|+|+||++.+.+..+......+..++.+|+.+++||+++|++ |
T Consensus 230 ~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~ 309 (361)
T cd04747 230 LADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPAS 309 (361)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCC
Confidence 234677899999999999999999987753322222234567788999999999999997 7
Q ss_pred HHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC--CCCCCcc
Q 015862 328 REDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP--LNKYNRE 371 (399)
Q Consensus 328 ~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~--~~~~~~~ 371 (399)
+++++++|++|.||+|++||++++||||++|+++|+. +++|++.
T Consensus 310 ~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g~~~~Ir~~~~~ 355 (361)
T cd04747 310 LDRLLERLERGEFDLVAVGRALLSDPAWVAKVREGRLDELIPFSRA 355 (361)
T ss_pred HHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcCCcccccCCCHH
Confidence 8999999999999999999999999999999999986 5666543
No 7
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=6.6e-81 Score=617.04 Aligned_cols=318 Identities=30% Similarity=0.461 Sum_probs=286.7
Q ss_pred CCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhH
Q 015862 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWK 110 (399)
Q Consensus 32 Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~ 110 (399)
||+|++||+++|||||+|+||+++++.+|.||+.+++||++||+ |+||||+|+++|++.++.+++++++|+|+++++||
T Consensus 1 Lf~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 1 LLSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CCCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 79999999999999999999998877789999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHH
Q 015862 111 PIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAAR 190 (399)
Q Consensus 111 ~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 190 (399)
+++++||++|+++++||+|+||++.... .+.++++||.++... ....|++||.+||++++++|++||+
T Consensus 81 ~l~~~vh~~g~~~~~Ql~H~G~~~~~~~--~~~~~~~ps~~~~~~----------~~~~~~~mt~~eI~~ii~~f~~AA~ 148 (343)
T cd04734 81 RLAEAVHAHGAVIMIQLTHLGRRGDGDG--SWLPPLAPSAVPEPR----------HRAVPKAMEEEDIEEIIAAFADAAR 148 (343)
T ss_pred HHHHHHHhcCCeEEEeccCCCcCcCccc--CCCcccCCCCCCCCC----------CCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986322 245678999876542 2446899999999999999999999
Q ss_pred HHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCC
Q 015862 191 NAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 191 ~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~ 269 (399)
+|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++||++.+...+ +.
T Consensus 149 ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~---G~ 225 (343)
T cd04734 149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEG---GL 225 (343)
T ss_pred HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCC---CC
Confidence 999999999999999999999999999999999999999999999999999999999987 69999998654332 34
Q ss_pred hHHHHHHHHHhhhhhC-ceEEEEeCCCcccc-----------cccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHH
Q 015862 270 PEALGLYMAESLNKYG-ILYCHMVEPRMKTR-----------EEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIA 336 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~G-vd~l~v~~~~~~~~-----------~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~ 336 (399)
+.++++++++.|++.| +|+|+|+.+++... .....++++++.+|+.+++||+++|++ |+++++++|+
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~ 305 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALA 305 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHH
Confidence 5788999999999998 99999987764321 011224567888999999999999999 9999999999
Q ss_pred cCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 337 EGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 337 ~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
+|.||+|++||++++||||++|+++|+.
T Consensus 306 ~~~~D~V~~gR~~ladP~l~~k~~~g~~ 333 (343)
T cd04734 306 AGHADMVGMTRAHIADPHLVAKAREGRE 333 (343)
T ss_pred cCCCCeeeecHHhHhCccHHHHHHcCCc
Confidence 9999999999999999999999999985
No 8
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=8.4e-81 Score=613.45 Aligned_cols=316 Identities=27% Similarity=0.389 Sum_probs=284.4
Q ss_pred cCCCccccCCeeeCCceeeCCCCCCCC--CCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHh
Q 015862 31 LFLTPYKMGNFNLSHRVVLAPLTRQRS--YNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVE 107 (399)
Q Consensus 31 ~Lf~P~~ig~~~lkNRiv~apm~~~~~--~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~ 107 (399)
+||+|++||+++|||||+|+||+++.+ +||.||+++++||++||+ |+||||+|.+.|++.+...++++++|+|++++
T Consensus 2 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~ 81 (337)
T PRK13523 2 KLFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIE 81 (337)
T ss_pred CCCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHH
Confidence 599999999999999999999988766 589999999999999999 89999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHH
Q 015862 108 AWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRL 187 (399)
Q Consensus 108 ~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~ 187 (399)
+||+++|+||++|+++++||+|+||.+.. . ..+++||.++... ....|++||.+||++++++|++
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~----~-~~~~~ps~~~~~~----------~~~~p~~mt~eeI~~ii~~f~~ 146 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAEL----E-GDIVAPSAIPFDE----------KSKTPVEMTKEQIKETVLAFKQ 146 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCC----C-CCccCCCCCCCCC----------CCCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998742 1 2458999887542 1456899999999999999999
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGD 267 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~ 267 (399)
||++|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++ +.+|+||+|+.+...+
T Consensus 147 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~--- 222 (337)
T PRK13523 147 AAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHPG--- 222 (337)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCCC---
Confidence 999999999999999999999999999999999999999999999999999999999999 4589999998654332
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCccccc---ccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTRE---EKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~---~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
+.+.+++.++++.|++.|+|||+|+.+.+.... ....++++++.||+++++||+++|++ |+++|+++|++|.||+|
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 346788999999999999999999988643211 12235678899999999999999999 89999999999999999
Q ss_pred EechHHhhCCcHHHHHHhCCCC
Q 015862 344 VYGRLFLANPDLPRRFELNAPL 365 (399)
Q Consensus 344 ~~gR~~iadPdl~~k~~~g~~~ 365 (399)
+|||++++||||++|++++..-
T Consensus 303 ~~gR~~iadP~~~~k~~~~~~~ 324 (337)
T PRK13523 303 FIGRELLRNPYFPRIAAKELGF 324 (337)
T ss_pred HhhHHHHhCccHHHHHHHHcCC
Confidence 9999999999999999998763
No 9
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.2e-80 Score=615.26 Aligned_cols=319 Identities=30% Similarity=0.467 Sum_probs=282.9
Q ss_pred CCCccccCC-eeeCCceeeCCCCCCCC-CCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCC---CCCCCCCHHH
Q 015862 32 FLTPYKMGN-FNLSHRVVLAPLTRQRS-YNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNP---NTPSIWTKEQ 105 (399)
Q Consensus 32 Lf~P~~ig~-~~lkNRiv~apm~~~~~-~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~---~~~~l~~d~~ 105 (399)
||+|++||+ ++|||||+|+||+++++ .||.||+++++||++||+ |+||||+|.++|++.++.++ +++++|+|++
T Consensus 1 Lf~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~ 80 (338)
T cd04733 1 LGQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGED 80 (338)
T ss_pred CCCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHH
Confidence 899999995 99999999999999888 899999999999999999 89999999999999999888 8999999999
Q ss_pred HhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHH
Q 015862 106 VEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDF 185 (399)
Q Consensus 106 i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f 185 (399)
+++||+++|+||++|+++++||+|+||++.... +..+++||.++..... . .....|++||.+||++++++|
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~---~~~~~~ps~~~~~~~~--~----~~~~~p~~mt~~eI~~~i~~~ 151 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLNHPGRQSPAGL---NQNPVAPSVALDPGGL--G----KLFGKPRAMTEEEIEDVIDRF 151 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCcCCCccC---CCCCcCCCCCcCcccc--c----ccCCCCCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999986543 2356889887654210 0 023468999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||+|+.+...
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~- 230 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR- 230 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC-
Confidence 99999999999999999999999999999999999999999999999999999999999999988 7999999843322
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc-----------CCCchhhHHHHhhcCCcEEEeCCC-CHHHHH
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK-----------SECPHSLLPMRKAFKGTFLVAGGY-DREDGN 332 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~-----------~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~ 332 (399)
. +.+.++++++++.|++.|+|+|+|+.+.+.++... ..+++.++.||+++++||+++|++ |+++++
T Consensus 231 ~--g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 231 G--GFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAME 308 (338)
T ss_pred C--CCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHH
Confidence 2 23577899999999999999999998765332211 112456778999999999999999 899999
Q ss_pred HHHHcCCCcEEEechHHhhCCcHHHHHHhC
Q 015862 333 KAIAEGRADLVVYGRLFLANPDLPRRFELN 362 (399)
Q Consensus 333 ~~L~~G~~D~V~~gR~~iadPdl~~k~~~g 362 (399)
++|++|.||+|+|||++++||+|++|+++|
T Consensus 309 ~~l~~g~aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 309 QALASGAVDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred HHHHcCCCCeeeeChHhhhCccHHHHHhcC
Confidence 999999999999999999999999999987
No 10
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=3.2e-80 Score=617.61 Aligned_cols=343 Identities=22% Similarity=0.311 Sum_probs=289.1
Q ss_pred cCccCCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCC-CCCCCCHHH
Q 015862 28 PVILFLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPN-TPSIWTKEQ 105 (399)
Q Consensus 28 ~~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~-~~~l~~d~~ 105 (399)
.|++||+|++||+++|||||+|+||++..+.. . .+.+..||++||+ |+||||+|+++|++.+...+. ++++|+|++
T Consensus 4 ~~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~-~-~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~ 81 (370)
T cd02929 4 RHDILFEPIKIGPVTARNRFYQVPHCNGMGYR-K-PSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGD 81 (370)
T ss_pred cccccCCCccCCCEEeccceEECCcccCcCCC-C-hHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHH
Confidence 46889999999999999999999998875422 2 2345688999999 899999999999999998887 799999999
Q ss_pred HhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHH
Q 015862 106 VEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDF 185 (399)
Q Consensus 106 i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f 185 (399)
+++||+++++||++|+++++||+|+||++.... .+..+++||.++.... .+ ....|++||++||++++++|
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~--~~~~~~~ps~~~~~~~---~~----~~~~p~~mt~~eI~~ii~~f 152 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELWHGGAHAPNRE--SRETPLGPSQLPSEFP---TG----GPVQAREMDKDDIKRVRRWY 152 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecccCCCCCCccC--CCCCccCCCCCCCCcc---cc----CCCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999886422 2445789998764310 00 13468999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++|||+++...+
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~ 232 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGP 232 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987 79999998654432
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc------cccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHc
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR------EEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAE 337 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~------~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~ 337 (399)
. +..+.++++++++.|++. +|+++++.+.+... ......+++++.+|+++++||+++|++ ++++++++|++
T Consensus 233 ~-g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~ 310 (370)
T cd02929 233 G-GIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKS 310 (370)
T ss_pred C-CCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHc
Confidence 2 224678889999999876 89999987653211 112223567788999999999999999 89999999999
Q ss_pred CCCcEEEechHHhhCCcHHHHHHhCCC--C------CCCCc------ccccccCCCCCcc
Q 015862 338 GRADLVVYGRLFLANPDLPRRFELNAP--L------NKYNR------ETFYTSDPVVGYT 383 (399)
Q Consensus 338 G~~D~V~~gR~~iadPdl~~k~~~g~~--~------~~~~~------~~~~~~~~~~g~~ 383 (399)
|.+|+|+|||++++||||++|+++|+. + +.|.. ...|.+||..|+|
T Consensus 311 g~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~C~~~~~~~~~~~C~vNp~~g~e 370 (370)
T cd02929 311 GILDLIGAARPSIADPFLPKKIREGRIDDIRECIGCNICISGDEGGVPMRCTQNPTAGEE 370 (370)
T ss_pred CCCCeeeechHhhhCchHHHHHHcCCccccccCCchhhhhccccCCCCceeccCccccCC
Confidence 999999999999999999999999973 2 22321 1346789998875
No 11
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=5.3e-80 Score=613.34 Aligned_cols=325 Identities=31% Similarity=0.465 Sum_probs=286.9
Q ss_pred CCCccccCC-eeeCCceeeCCCCCCCC-CCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhh
Q 015862 32 FLTPYKMGN-FNLSHRVVLAPLTRQRS-YNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAW 109 (399)
Q Consensus 32 Lf~P~~ig~-~~lkNRiv~apm~~~~~-~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~ 109 (399)
||+|++||+ ++|||||+|+||+++++ .||.||+.+++||++||+|+||||+|.++|++.+..+++++++|+|+++++|
T Consensus 1 Lf~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~ 80 (353)
T cd04735 1 LFEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGL 80 (353)
T ss_pred CCCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHH
Confidence 899999998 99999999999999888 7999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHH
Q 015862 110 KPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAA 189 (399)
Q Consensus 110 ~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA 189 (399)
|+++|+||++|+++++||+|+||++..... .+..+++||+++.... ....|++||.+||++++++|++||
T Consensus 81 ~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~-~~~~~~~ps~~~~~~~---------~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 81 RKLAQAIKSKGAKAILQIFHAGRMANPALV-PGGDVVSPSAIAAFRP---------GAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCcccc-CCCceecCCCCcccCC---------CCCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876432 2446799998763210 144689999999999999999999
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhC----CC-ceEEEecCCcccCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIG----AD-RVGIRLSPFANYME 264 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg----~~-~v~vrls~~~~~~~ 264 (399)
++|++|||||||||++|||||+|||||.+|+|+|+||||+|||+||++|||++||+++| ++ +|++|+|+.+...+
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~ 230 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEP 230 (353)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999998 56 79999998654332
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--ccCCCchhhHHHHhhc--CCcEEEeCCC-CHHHHHHHHHcCC
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--EKSECPHSLLPMRKAF--KGTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
+.+.+++.++++.|++.|+|||+|+.+.+.... ........++.+++.+ ++||+++|++ |+++++++|++|
T Consensus 231 ---g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g- 306 (353)
T cd04735 231 ---GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETG- 306 (353)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-
Confidence 345688999999999999999999987543221 1112345677788887 7899999999 899999999996
Q ss_pred CcEEEechHHhhCCcHHHHHHhCCCC--CCCCc
Q 015862 340 ADLVVYGRLFLANPDLPRRFELNAPL--NKYNR 370 (399)
Q Consensus 340 ~D~V~~gR~~iadPdl~~k~~~g~~~--~~~~~ 370 (399)
||+|++||++++||||++|+++|++. ++|..
T Consensus 307 aD~V~~gR~liadPdl~~k~~~G~~~~ir~ci~ 339 (353)
T cd04735 307 ADLVAIGRGLLVDPDWVEKIKEGREDEINLEID 339 (353)
T ss_pred CChHHHhHHHHhCccHHHHHHcCChhhhhhcCC
Confidence 99999999999999999999999864 45644
No 12
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.4e-78 Score=608.23 Aligned_cols=323 Identities=31% Similarity=0.440 Sum_probs=278.8
Q ss_pred CCCccccCCeeeCCceeeCCCCC-CCC-CCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCC--CCC--CCCCCCHH
Q 015862 32 FLTPYKMGNFNLSHRVVLAPLTR-QRS-YNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQG--NPN--TPSIWTKE 104 (399)
Q Consensus 32 Lf~P~~ig~~~lkNRiv~apm~~-~~~-~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~--~~~--~~~l~~d~ 104 (399)
||+|++||+++|||||||+||++ .++ .||.||+++++||++||+ |+||||+|+++|++.+.. .+. ++++++++
T Consensus 1 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd02931 1 LFEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTA 80 (382)
T ss_pred CCCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHH
Confidence 89999999999999999999986 454 789999999999999999 899999999999988643 223 34567788
Q ss_pred HHhhhHHHHHHHHHcCCeEEEecccC-CCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHH
Q 015862 105 QVEAWKPIVDAVHAKGGIFFCQIRHV-GRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVN 183 (399)
Q Consensus 105 ~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~ 183 (399)
++++||+++|+||++|+++++||+|. ||++.+... .+..+++||+++.... ....|++||.+||+++|+
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~-~~~~~~~ps~~~~~~~---------~~~~p~~mt~~eI~~ii~ 150 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFL-GEDKPVAPSPIPNRWL---------PEITCRELTTEEVETFVG 150 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEccCcCCCccCcccc-CCCCccCCCCCCCCcC---------CCCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999997 999876432 2345799998775320 135789999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEcccc-chhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAH-GYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~-GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+|++||++|++|||||||||++| ||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++|+++++.
T Consensus 151 ~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~ 230 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999988 79999997542
Q ss_pred cCCC-----------CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--------ccCCCchhhHHHHhhcCCcEEE
Q 015862 262 YMES-----------GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--------EKSECPHSLLPMRKAFKGTFLV 322 (399)
Q Consensus 262 ~~~~-----------~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--------~~~~~~~~~~~ir~~~~~pvi~ 322 (399)
..+. ..+.+.+++.++++.|++.|+|+|+++.+.+.... ....++++++.+|+.+++||++
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~ 310 (382)
T cd02931 231 IKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM 310 (382)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEE
Confidence 2110 12346788999999999999999999987643211 1112245788899999999999
Q ss_pred eCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 323 AGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 323 ~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
+|++ |+++++++|++|.||+|+|||++++||||++|+++|+.
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 353 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRRGRF 353 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcCCc
Confidence 9999 89999999999999999999999999999999999974
No 13
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=2e-78 Score=602.47 Aligned_cols=314 Identities=28% Similarity=0.415 Sum_probs=280.1
Q ss_pred CCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhH
Q 015862 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWK 110 (399)
Q Consensus 32 Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~ 110 (399)
||+|++||+++|||||+|+||++.++.+|.||+.+++||++||+ |+||||+|+++|++.|..+++++++|+|+++++||
T Consensus 1 lf~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~ 80 (353)
T cd02930 1 LLSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHR 80 (353)
T ss_pred CCCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHH
Confidence 79999999999999999999987776568899999999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHH
Q 015862 111 PIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAAR 190 (399)
Q Consensus 111 ~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 190 (399)
+++++||++|+++++||+|+||++... .+++||+++... ....|++||++||++++++|++||+
T Consensus 81 ~l~~~vh~~g~~~~~QL~h~G~~~~~~------~~~~ps~~~~~~----------~~~~p~~mt~~eI~~i~~~f~~aA~ 144 (353)
T cd02930 81 LITDAVHAEGGKIALQILHAGRYAYHP------LCVAPSAIRAPI----------NPFTPRELSEEEIEQTIEDFARCAA 144 (353)
T ss_pred HHHHHHHHcCCEEEeeccCCCCCCCCC------CCcCCCCCCCCC----------CCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987532 358898876432 1346899999999999999999999
Q ss_pred HHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCC
Q 015862 191 NAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 191 ~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~ 269 (399)
+|+++||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||+++.+...+ ..
T Consensus 145 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~---g~ 221 (353)
T cd02930 145 LAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG---GS 221 (353)
T ss_pred HHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC---CC
Confidence 999999999999999999999999999999999999999999999999999999999988 79999998543322 34
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCccccc-------ccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTRE-------EKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRAD 341 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~-------~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 341 (399)
+.++++++++.|+++|+|+|+++.+....+. ....+.+.++.+|+.+++||+++|++ ++++++++|++|.+|
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDAD 301 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCC
Confidence 6788999999999999999999754321111 01113456788999999999999999 899999999999999
Q ss_pred EEEechHHhhCCcHHHHHHhCCC
Q 015862 342 LVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 342 ~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
+|+|||++++||||++|+++|+.
T Consensus 302 ~V~~gR~~l~dP~~~~k~~~g~~ 324 (353)
T cd02930 302 MVSMARPFLADPDFVAKAAAGRA 324 (353)
T ss_pred hhHhhHHHHHCccHHHHHHhCCc
Confidence 99999999999999999999974
No 14
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.4e-77 Score=589.54 Aligned_cols=315 Identities=38% Similarity=0.620 Sum_probs=285.0
Q ss_pred CCccccCCeeeCCceeeCCCCCCCC-CCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhH
Q 015862 33 LTPYKMGNFNLSHRVVLAPLTRQRS-YNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWK 110 (399)
Q Consensus 33 f~P~~ig~~~lkNRiv~apm~~~~~-~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~ 110 (399)
|+|++||+++|||||+|+||+++++ .||.||+.+++||++||+ |+||||+|+++|++.+..+++++++|+|+++++||
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 8999999999999999999999988 789999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHH
Q 015862 111 PIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAAR 190 (399)
Q Consensus 111 ~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 190 (399)
+++++||++|+++++||+|+||.+++.. .+..+++||.++... ....|++||.+||+++|++|++||+
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~~~~~~~s~~~~~~----------~~~~~~~mt~~ei~~~i~~~~~aA~ 148 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNL--TGGPPPAPSAIPSPG----------GGEPPREMTKEEIEQIIEDFAAAAR 148 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcC--CCCCccCCCCCCCCC----------CCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654 244568998766432 2457999999999999999999999
Q ss_pred HHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCC
Q 015862 191 NAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 191 ~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~ 269 (399)
+|+++||||||||++||||++|||||.+|+|+|+||||+|||+||++|+|++||+++|++ +|+||+++.+...+ ..
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~---g~ 225 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPG---GL 225 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCC---CC
Confidence 999999999999999999999999999999999999999999999999999999999988 89999998543322 24
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccc--------cCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREE--------KSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~--------~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
+.+++.++++.|++.|+|||+++.+....... .....++++.+|+.+++||+++|++ |+++++++|++|.+
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~a 305 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKA 305 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 67889999999999999999999876543221 1234567888999999999999999 79999999999889
Q ss_pred cEEEechHHhhCCcHHHHHHhC
Q 015862 341 DLVVYGRLFLANPDLPRRFELN 362 (399)
Q Consensus 341 D~V~~gR~~iadPdl~~k~~~g 362 (399)
|+|++||++++||||++|+++|
T Consensus 306 D~V~igR~~ladP~l~~k~~~g 327 (327)
T cd02803 306 DLVALGRALLADPDLPNKAREG 327 (327)
T ss_pred CeeeecHHHHhCccHHHHHhcC
Confidence 9999999999999999999986
No 15
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=5e-77 Score=589.09 Aligned_cols=317 Identities=32% Similarity=0.483 Sum_probs=282.2
Q ss_pred CCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhH
Q 015862 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWK 110 (399)
Q Consensus 32 Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~ 110 (399)
||+|++||+++|||||+|+||+++.+.||.||+.+++||++||+ |+||||+|++.|++.+..+++++++|+|+++++||
T Consensus 1 Lf~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~ 80 (336)
T cd02932 1 LFTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALK 80 (336)
T ss_pred CCCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHH
Confidence 79999999999999999999998776799999999999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEecccCCCccCCCCC-----------CCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHH
Q 015862 111 PIVDAVHAKGGIFFCQIRHVGRVSNRDYQ-----------PNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIP 179 (399)
Q Consensus 111 ~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~-----------~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~ 179 (399)
+++|+||++|+++++||+|+||++..... ..+..+++||.++... ....|++||++||+
T Consensus 81 ~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~----------~~~~p~~mt~~eI~ 150 (336)
T cd02932 81 RIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDE----------GWPTPRELTREEIA 150 (336)
T ss_pred HHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCC----------CCCCCCcCCHHHHH
Confidence 99999999999999999999999865321 0123578898876542 24568999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecC
Q 015862 180 QIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSP 258 (399)
Q Consensus 180 ~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~ 258 (399)
+++++|++||++|+++||||||||++|||||+|||||.+|+|+|+||||+|||+||++||+++||+++|++ +|+||+++
T Consensus 151 ~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~ 230 (336)
T cd02932 151 EVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISA 230 (336)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 79999998
Q ss_pred CcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc----ccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHH
Q 015862 259 FANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE----EKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNK 333 (399)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~----~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~ 333 (399)
.+...+ ..+.+++.++++.|++.|+|||+++.+.+.... ......+.++.||+.+++||+++|++ |++++++
T Consensus 231 ~~~~~~---g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~ 307 (336)
T cd02932 231 TDWVEG---GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEA 307 (336)
T ss_pred cccCCC---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 543222 235788999999999999999999876543211 12224567888999999999999999 8999999
Q ss_pred HHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 334 AIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 334 ~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
+|++|.||+|++||++++||+|++|+.+
T Consensus 308 ~l~~g~aD~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 308 ILESGRADLVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred HHHcCCCCeehhhHHHHhCccHHHHHhh
Confidence 9999999999999999999999999875
No 16
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=6e-74 Score=621.00 Aligned_cols=326 Identities=29% Similarity=0.440 Sum_probs=287.9
Q ss_pred cCccCCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHH
Q 015862 28 PVILFLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQV 106 (399)
Q Consensus 28 ~~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i 106 (399)
.+++||+|++||+++|||||+|+||+.+.+.||.||+.++.||++||+ |+||||+|+++|++.|+..++++++|+|+++
T Consensus 395 ~~~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i 474 (765)
T PRK08255 395 PPPPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQE 474 (765)
T ss_pred CcccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHH
Confidence 468899999999999999999999987666889999999999999999 8999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHc-CCeEEEecccCCCccCCCCC---------CCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChh
Q 015862 107 EAWKPIVDAVHAK-GGIFFCQIRHVGRVSNRDYQ---------PNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTD 176 (399)
Q Consensus 107 ~~~~~l~~~vh~~-g~~i~~QL~H~Gr~~~~~~~---------~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~ 176 (399)
++||+++|+||++ |+++++||+|+||++..... ..+..+++||+++... ....|++||++
T Consensus 475 ~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~----------~~~~p~~mt~~ 544 (765)
T PRK08255 475 AAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLP----------GSQVPREMTRA 544 (765)
T ss_pred HHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCC----------CCCCCCcCCHH
Confidence 9999999999999 69999999999999864321 0123468999887542 24579999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEE
Q 015862 177 EIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIR 255 (399)
Q Consensus 177 eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vr 255 (399)
||++++++|++||++|+++||||||||+||||||+|||||.+|+|||+||||+|||+||++||+++||+++|++ +|++|
T Consensus 545 eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~r 624 (765)
T PRK08255 545 DMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVR 624 (765)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 79999
Q ss_pred ecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc----cccCCCchhhHHHHhhcCCcEEEeCCC-CHHH
Q 015862 256 LSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR----EEKSECPHSLLPMRKAFKGTFLVAGGY-DRED 330 (399)
Q Consensus 256 ls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~----~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~ 330 (399)
||+.+...+ ..+.++++++++.|++.|+|+|+|+.+..... ........+++.||+.+++||+++|++ |+++
T Consensus 625 i~~~~~~~~---g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~ 701 (765)
T PRK08255 625 ISAHDWVEG---GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADH 701 (765)
T ss_pred EccccccCC---CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHH
Confidence 998543322 34678899999999999999999997654321 111223567888999999999999999 8999
Q ss_pred HHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCCCC
Q 015862 331 GNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLN 366 (399)
Q Consensus 331 a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~~~ 366 (399)
++++|++|.||+|+|||++++||+|+.+......+.
T Consensus 702 a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 702 VNSIIAAGRADLCALARPHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred HHHHHHcCCcceeeEcHHHHhCccHHHHHHHHcCCC
Confidence 999999999999999999999999999987765443
No 17
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=3.3e-55 Score=426.84 Aligned_cols=361 Identities=40% Similarity=0.584 Sum_probs=284.2
Q ss_pred CccCCCccccCCeeeCCceeeCCCCCCCCCCCCC---CHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHH
Q 015862 29 VILFLTPYKMGNFNLSHRVVLAPLTRQRSYNNVP---QPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKE 104 (399)
Q Consensus 29 ~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~---t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~ 104 (399)
+..||+|+++|.+.+..|++.+||+.+++.+..+ ...+..||.+|.. -+++||++...+...+-++...+++|.|+
T Consensus 6 ~~~~a~~v~~g~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp 85 (400)
T KOG0134|consen 6 FPELAEPVKMGNLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDP 85 (400)
T ss_pred ccccccccccccccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeecc
Confidence 3459999999999999999999999988744333 4556778888886 67899999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHcCCeEEEecccCC---CccCCCCCCC-CCCCcccCCCCCCccc-----ccCCCcccCCCCCCCCCh
Q 015862 105 QVEAWKPIVDAVHAKGGIFFCQIRHVG---RVSNRDYQPN-GQAPISCTDKPLTPQI-----RANGVDVAQFTPPRRLRT 175 (399)
Q Consensus 105 ~i~~~~~l~~~vh~~g~~i~~QL~H~G---r~~~~~~~~~-~~~~~aps~~~~~~~~-----~~~g~~~~~~~~p~~mt~ 175 (399)
+.+.|+-.+.++|++++..++||||.| +.+.....+. ..+..+|+.+...+.. ....+.+..+..|+.||.
T Consensus 86 ~~~~~~~~~~~~~e~~~~~~~ql~~~~~~~~~~~~~~~~~~h~~~q~~~~~~p~~~~a~~v~~~~~~~~~~~~~p~~l~~ 165 (400)
T KOG0134|consen 86 QNEEWAGNVIAFHENDSFEFRQLWHLGAKLQDGALAVQQLSHAGRQTPCTVNPTPWGASDVQLPNAIRGVEFGKPKPLSK 165 (400)
T ss_pred cccccCCceEEEecCCchHHHHHHHhhhhhhhhhhhHHhccCCccccccccCCCCCCHHhccCcccccchhcCCCCCCCH
Confidence 999999999999988888888888877 4443222111 1111222221100000 011111113456899999
Q ss_pred hHHHHHHHHHHHHH-HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE
Q 015862 176 DEIPQIVNDFRLAA-RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI 254 (399)
Q Consensus 176 ~eI~~ii~~f~~aA-~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v 254 (399)
++|.+.|.+|..+| +.+.++||||||||++|||||+|||||.+|.|||+||||+|||+||++||+++||+++|+..+++
T Consensus 166 e~Ik~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l 245 (400)
T KOG0134|consen 166 EQIKTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFL 245 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceE
Confidence 99999665555555 55559999999999999999999999999999999999999999999999999999999888999
Q ss_pred EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc-----------ccccccCCCchhhHHHHhhcCCcEEEe
Q 015862 255 RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRM-----------KTREEKSECPHSLLPMRKAFKGTFLVA 323 (399)
Q Consensus 255 rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~-----------~~~~~~~~~~~~~~~ir~~~~~pvi~~ 323 (399)
|+++..++.+. ..+.++...+|..++..|+|++.++.+.+ +.........+++..+|+.++.+|+..
T Consensus 246 ~~~~~~~fq~~--~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a 323 (400)
T KOG0134|consen 246 RGSPTNEFQDI--GITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYA 323 (400)
T ss_pred EecCchhhhhc--cccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEe
Confidence 99885555543 23567788899999999999776643332 111122345677888999999998766
Q ss_pred CC-C-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCCCCCCCcccccccCCCCCccccCCCCcc
Q 015862 324 GG-Y-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPLNKYNRETFYTSDPVVGYTDYPFLNTS 391 (399)
Q Consensus 324 Gg-i-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (399)
|+ . |++.+.++++.|..|+|++||.++++||||.|+..|.++++.++.++|...+..||+|||+.+..
T Consensus 324 ~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~~~~n~~d~~t~~~~~~~~g~~~~~~~~~~ 393 (400)
T KOG0134|consen 324 GGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNGLPLNKYDRSTFYTDMAVKGYADYPQMEQM 393 (400)
T ss_pred cCCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhCCCcccccccccccccchhccccChhHHHH
Confidence 63 4 99999999999999999999999999999999999999999999999987999999999987643
No 18
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.98 E-value=1.6e-31 Score=262.57 Aligned_cols=235 Identities=19% Similarity=0.188 Sum_probs=181.9
Q ss_pred cCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHHHHHH
Q 015862 38 MGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIVDAVH 117 (399)
Q Consensus 38 ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~vh 117 (399)
||++.++|++++|||... |+..++...+.. |+++++||.+....-. +..+.. +++. ..+
T Consensus 1 ~~~~~~~~~l~lAPm~~~-------t~~~fR~l~~~~-g~~~~~temi~~~~l~---------~~~~~~---~~~~-~~~ 59 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGV-------TDSPFRRLVAEY-GAGLTVCEMVSSEAIV---------YDSQRT---MRLL-DIA 59 (319)
T ss_pred CCCccCCCCEEecCCCCC-------CcHHHHHHHHHH-CCCEEEECCEEEhhhh---------cCCHHH---HHHh-hcC
Confidence 589999999999999653 444444343333 6899999987664321 111111 1111 124
Q ss_pred HcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 015862 118 AKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGF 197 (399)
Q Consensus 118 ~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGf 197 (399)
..+.++++||... .| ++|+++|++++++||
T Consensus 60 ~~~~p~i~ql~g~--------------------------------------~~------------~~~~~aa~~~~~~G~ 89 (319)
T TIGR00737 60 EDETPISVQLFGS--------------------------------------DP------------DTMAEAAKINEELGA 89 (319)
T ss_pred CccceEEEEEeCC--------------------------------------CH------------HHHHHHHHHHHhCCC
Confidence 4577899999520 11 458999999999999
Q ss_pred CEEEEccccchhhhhcccCcccCCCCCCCCc-hhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHH
Q 015862 198 DGVELHGAHGYLIDQFLKDQVNDRTDQYGGS-LENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLY 276 (399)
Q Consensus 198 DgVeIh~~~GyLl~qFlSp~~N~R~D~yGGs-lenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~ 276 (399)
|+||||+|| | .|+|+|+|||| +++|.+++.||+++||++++ .+|.||++... .....+..+
T Consensus 90 d~IelN~gc---------P-~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g~-------~~~~~~~~~ 151 (319)
T TIGR00737 90 DIIDINMGC---------P-VPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIGW-------DDAHINAVE 151 (319)
T ss_pred CEEEEECCC---------C-HHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEccc-------CCCcchHHH
Confidence 999999998 7 78999999998 68999999999999999986 48999987521 111234578
Q ss_pred HHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcH
Q 015862 277 MAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 277 l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl 355 (399)
+++.|++.|+|+|++|.+...+.+.....+++++.|++.+++||+++|++ |+++++++|+.++||+|++||++++||+|
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l 231 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWL 231 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChH
Confidence 99999999999999987654333344456788999999999999999999 89999999987779999999999999999
Q ss_pred HHHHHh
Q 015862 356 PRRFEL 361 (399)
Q Consensus 356 ~~k~~~ 361 (399)
++++++
T Consensus 232 ~~~~~~ 237 (319)
T TIGR00737 232 FRQIEQ 237 (319)
T ss_pred HHHHHH
Confidence 999875
No 19
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.97 E-value=1.2e-30 Score=244.65 Aligned_cols=163 Identities=20% Similarity=0.172 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCccc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~ 262 (399)
++|+++|++++++|||+||||++| |.+|.|+|+|||+++||++++.|++++||++++ .+|.+|++..
T Consensus 67 ~~~~~aa~~~~~aG~d~ieln~g~---------p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~--- 133 (231)
T cd02801 67 ETLAEAAKIVEELGADGIDLNMGC---------PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLG--- 133 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCC---------CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeec---
Confidence 568999999999999999999998 889999999999999999999999999999997 4678877652
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRAD 341 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 341 (399)
+... +++.++++.|++.|+|+|+++.+.....+.....++.++.+++.+++||+++|++ |+++++++++.+.+|
T Consensus 134 ----~~~~-~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad 208 (231)
T cd02801 134 ----WDDE-EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVD 208 (231)
T ss_pred ----cCCc-hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCC
Confidence 1111 4688999999999999999987754332233456778889999999999999999 899999999997799
Q ss_pred EEEechHHhhCCcHHHHHHhCC
Q 015862 342 LVVYGRLFLANPDLPRRFELNA 363 (399)
Q Consensus 342 ~V~~gR~~iadPdl~~k~~~g~ 363 (399)
+|++||++++||+|++++++..
T Consensus 209 ~V~igr~~l~~P~~~~~~~~~~ 230 (231)
T cd02801 209 GVMIGRGALGNPWLFREIKELL 230 (231)
T ss_pred EEEEcHHhHhCCHHHHhhhhcc
Confidence 9999999999999999998753
No 20
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.97 E-value=4.2e-30 Score=250.86 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
++|++||++++++|||+||||+||. +|..|+ ..+|.+|++|.+++.+|+++||++++++ ||+||++..
T Consensus 75 ~~~~~aA~~~~~~g~d~IdiN~GCP-------~~~v~~--~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g-- 143 (312)
T PRK10550 75 QWLAENAARAVELGSWGVDLNCGCP-------SKTVNG--SGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG-- 143 (312)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC-------chHHhc--CCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC--
Confidence 4589999999999999999999992 233332 2233479999999999999999999865 899999872
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC-CchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE-CPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~-~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
+. ..+++.++++.|+++|+|+|+||.++..+.+..++ .++.++.+|+++++||++||++ |+++++++|+.+.
T Consensus 144 -----~~-~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 144 -----WD-SGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred -----CC-CchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccC
Confidence 12 23447899999999999999999887655554433 6788999999999999999999 9999999999888
Q ss_pred CcEEEechHHhhCCcHHHHHHhCCC
Q 015862 340 ADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 340 ~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
||+||+||++++||+|++++++|.+
T Consensus 218 ~DgVmiGRg~l~nP~lf~~~~~g~~ 242 (312)
T PRK10550 218 CDAVMIGRGALNIPNLSRVVKYNEP 242 (312)
T ss_pred CCEEEEcHHhHhCcHHHHHhhcCCC
Confidence 9999999999999999999998764
No 21
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.96 E-value=5.1e-28 Score=238.70 Aligned_cols=228 Identities=15% Similarity=0.192 Sum_probs=172.4
Q ss_pred CCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCC-cEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHHHHHHHcCCe
Q 015862 44 SHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKG-GFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGI 122 (399)
Q Consensus 44 kNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~-Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~ 122 (399)
+|++++|||.+. |+...+...+.- |+ ++++||.+.+..-- ... . +++.. .+..+.+
T Consensus 10 ~~~~~lAPM~g~-------td~~fR~~~~~~-g~~~~~~temv~~~~l~---------~~~-~----~~~l~-~~~~e~p 66 (333)
T PRK11815 10 SRRFSVAPMMDW-------TDRHCRYFHRLL-SRHALLYTEMVTTGAII---------HGD-R----ERLLA-FDPEEHP 66 (333)
T ss_pred CCCEEEeCCCCC-------cCHHHHHHHHHh-CCCCEEEECCEEecccc---------ccC-H----HHHhc-cCCCCCc
Confidence 679999999663 555544443333 55 89999988654221 111 1 11111 1345678
Q ss_pred EEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEE
Q 015862 123 FFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVEL 202 (399)
Q Consensus 123 i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeI 202 (399)
+++||.-. .| +.|++||++++++|||+|||
T Consensus 67 ~~vQl~g~--------------------------------------~p------------~~~~~aA~~~~~~g~d~Idl 96 (333)
T PRK11815 67 VALQLGGS--------------------------------------DP------------ADLAEAAKLAEDWGYDEINL 96 (333)
T ss_pred EEEEEeCC--------------------------------------CH------------HHHHHHHHHHHhcCCCEEEE
Confidence 89999510 11 45899999999999999999
Q ss_pred ccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhh
Q 015862 203 HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLN 282 (399)
Q Consensus 203 h~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le 282 (399)
|+|| |..|.|+|+|||++++|.+++.||++++|++++ .+|.+|++...+ +.++.++..++++.|+
T Consensus 97 N~gC---------P~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~-~pVsvKiR~g~~-----~~~t~~~~~~~~~~l~ 161 (333)
T PRK11815 97 NVGC---------PSDRVQNGRFGACLMAEPELVADCVKAMKDAVS-IPVTVKHRIGID-----DQDSYEFLCDFVDTVA 161 (333)
T ss_pred cCCC---------CHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC-CceEEEEEeeeC-----CCcCHHHHHHHHHHHH
Confidence 9998 999999999999999999999999999999984 378886654111 1234566789999999
Q ss_pred hhCceEEEEeCCCc-ccccc-------cCCCchhhHHHHhhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 283 KYGILYCHMVEPRM-KTREE-------KSECPHSLLPMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 283 ~~Gvd~l~v~~~~~-~~~~~-------~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
+.|+|+|++|.++. .+.+. .+..+++++.+++.+ ++|||++|++ |+++++++++ + ||+|++||++++|
T Consensus 162 ~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~-aDgVmIGRa~l~n 239 (333)
T PRK11815 162 EAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-H-VDGVMIGRAAYHN 239 (333)
T ss_pred HhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-c-CCEEEEcHHHHhC
Confidence 99999999986642 11111 223567888899986 8999999999 9999999997 4 9999999999999
Q ss_pred CcHHHHHHh
Q 015862 353 PDLPRRFEL 361 (399)
Q Consensus 353 Pdl~~k~~~ 361 (399)
|+|++++++
T Consensus 240 P~~~~~~~~ 248 (333)
T PRK11815 240 PYLLAEVDR 248 (333)
T ss_pred CHHHHHHHH
Confidence 999999876
No 22
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.96 E-value=2.4e-27 Score=232.75 Aligned_cols=237 Identities=16% Similarity=0.184 Sum_probs=177.3
Q ss_pred cccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHHHH
Q 015862 36 YKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIVDA 115 (399)
Q Consensus 36 ~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~ 115 (399)
++||+++++|++++|||.+. |+..++...+.. |+|+++||.+...+.. ..++.. ...+.
T Consensus 1 ~~i~~~~~~~~~~lAPM~g~-------td~~fR~l~~~~-g~~~~~temvs~~~~~--------~~~~~~---~~~~~-- 59 (321)
T PRK10415 1 MRIGQYQLRNRLIAAPMAGI-------TDRPFRTLCYEM-GAGLTVSEMMSSNPQV--------WESDKS---RLRMV-- 59 (321)
T ss_pred CccCCccCCCCEEecCCCCC-------CcHHHHHHHHHH-CCCEEEEccEEcchhh--------hcCHhH---HHHhc--
Confidence 36899999999999999653 555544444433 7899999987654321 011111 01110
Q ss_pred HHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 015862 116 VHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEA 195 (399)
Q Consensus 116 vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~a 195 (399)
.+....++++||.- ..| ++|+++|+++.+.
T Consensus 60 ~~~~~~~~~vQl~g--------------------------------------~~~------------~~~~~aa~~~~~~ 89 (321)
T PRK10415 60 HIDEPGIRTVQIAG--------------------------------------SDP------------KEMADAARINVES 89 (321)
T ss_pred cCccCCCEEEEEeC--------------------------------------CCH------------HHHHHHHHHHHHC
Confidence 01223456788841 011 3579999999999
Q ss_pred CCCEEEEccccchhhhhcccCcccCCCCC-CCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHH
Q 015862 196 GFDGVELHGAHGYLIDQFLKDQVNDRTDQ-YGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALG 274 (399)
Q Consensus 196 GfDgVeIh~~~GyLl~qFlSp~~N~R~D~-yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~ 274 (399)
|||+||||+|| |.. +.... +|..+.++.+++.+++++||++++ .+|++|++. ++....+++
T Consensus 90 g~d~IdlN~gC---------P~~-~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d-~pv~vKiR~-------G~~~~~~~~ 151 (321)
T PRK10415 90 GAQIIDINMGC---------PAK-KVNRKLAGSALLQYPDLVKSILTEVVNAVD-VPVTLKIRT-------GWAPEHRNC 151 (321)
T ss_pred CCCEEEEeCCC---------CHH-HHcCCCcccHHhcCHHHHHHHHHHHHHhcC-CceEEEEEc-------cccCCcchH
Confidence 99999999999 543 33344 455699999999999999999983 378998875 122233457
Q ss_pred HHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 275 LYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 275 ~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
.++++.+++.|+|+|++|.++..+.+.....++.++++++++++||+++|++ |+++++++++.++||+|++||+++.||
T Consensus 152 ~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP 231 (321)
T PRK10415 152 VEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 (321)
T ss_pred HHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCC
Confidence 8899999999999999998765555555567889999999999999999999 999999999977799999999999999
Q ss_pred cHHHHHHh
Q 015862 354 DLPRRFEL 361 (399)
Q Consensus 354 dl~~k~~~ 361 (399)
+++.++++
T Consensus 232 ~if~~~~~ 239 (321)
T PRK10415 232 WIFREIQH 239 (321)
T ss_pred hHHHHHHH
Confidence 99999875
No 23
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.2e-27 Score=229.96 Aligned_cols=238 Identities=20% Similarity=0.184 Sum_probs=187.3
Q ss_pred ccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCC-cEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHH
Q 015862 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKG-GFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIV 113 (399)
Q Consensus 35 P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~-Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~ 113 (399)
+.++|.+.++||+++|||.+. |+...++..+.- |+ ++.+||.+.....-.+........+. .
T Consensus 1 ~~~~~~~~~~~~~~lAPM~gv-------td~~fR~l~~~~-ga~~~~~TEmv~~~~~~~~~~~~~~~~~~--------~- 63 (323)
T COG0042 1 MLKIGLIELRNRVILAPMAGV-------TDLPFRRLAREL-GAYDLLYTEMVSAKALLHGRKKFLLLLDE--------L- 63 (323)
T ss_pred CCccccccccCcEEEecCCCC-------ccHHHHHHHHHh-CCCceEEEccEEEhhhccCCcchhhhcCc--------C-
Confidence 467899999999999999763 666655555443 56 99999987765443222211111100 0
Q ss_pred HHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 015862 114 DAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAI 193 (399)
Q Consensus 114 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~ 193 (399)
....++.+||.- ..| +.+++||+.+.
T Consensus 64 ----~~e~p~~vQl~g--------------------------------------sdp------------~~l~eaA~~~~ 89 (323)
T COG0042 64 ----EEERPVAVQLGG--------------------------------------SDP------------ELLAEAAKIAE 89 (323)
T ss_pred ----CCCCCEEEEecC--------------------------------------CCH------------HHHHHHHHHHH
Confidence 234568888851 012 23699999999
Q ss_pred HhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHH
Q 015862 194 EAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 273 (399)
Q Consensus 194 ~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~ 273 (399)
+.|+|+|+||||| |....-...+|.+|.....++.++|+++++++++-||+||++.. +++..-.
T Consensus 90 ~~g~~~IdlN~GC---------P~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG-------~d~~~~~ 153 (323)
T COG0042 90 ELGADIIDLNCGC---------PSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLG-------WDDDDIL 153 (323)
T ss_pred hcCCCEEeeeCCC---------ChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecc-------cCccccc
Confidence 9999999999999 77777778888899999999999999999999833788887762 1211123
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+.++++.+++.|++.++||.++..+.+..+..+++++.+|+.++ +|||+||++ |+++|.++|+.++||.||+||+++.
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 67799999999999999999987777777788999999999999 999999999 9999999999988999999999999
Q ss_pred CCcHHHHH
Q 015862 352 NPDLPRRF 359 (399)
Q Consensus 352 dPdl~~k~ 359 (399)
||++...+
T Consensus 234 nP~l~~~i 241 (323)
T COG0042 234 NPWLFRQI 241 (323)
T ss_pred CCcHHHHH
Confidence 99999984
No 24
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.95 E-value=3.6e-26 Score=222.89 Aligned_cols=245 Identities=14% Similarity=0.101 Sum_probs=183.2
Q ss_pred ccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCC-CCCCC----------CCCCCCCH
Q 015862 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNT-AQGNP----------NTPSIWTK 103 (399)
Q Consensus 35 P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~-g~~~~----------~~~~l~~d 103 (399)
+.++++++|||+|++||+.. |. +++.++.+.+. |+|+++++.+...+. |...| +..++.++
T Consensus 2 ~~~~~g~~l~npi~~aag~~-----~~-~~~~~~~~~~~--G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~ 73 (300)
T TIGR01037 2 EVELFGIRFKNPLILASGIM-----GS-GVESLRRIDRS--GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP 73 (300)
T ss_pred cEEECCEECCCCCEeCCcCC-----CC-CHHHHHHHHHc--CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc
Confidence 46789999999999999632 11 56666644332 799999998777643 22222 23455565
Q ss_pred HHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHH
Q 015862 104 EQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVN 183 (399)
Q Consensus 104 ~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~ 183 (399)
..-..++.+....|+.+.++++||+- .. .+
T Consensus 74 g~~~~~~~~~~~~~~~~~pl~~qi~g--------------------------------------~~------------~~ 103 (300)
T TIGR01037 74 GVEAFLEELKPVREEFPTPLIASVYG--------------------------------------SS------------VE 103 (300)
T ss_pred CHHHHHHHHHHHhccCCCcEEEEeec--------------------------------------CC------------HH
Confidence 55555666667777788899999951 00 14
Q ss_pred HHHHHHHHHHHhC--CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 184 DFRLAARNAIEAG--FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 184 ~f~~aA~~a~~aG--fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
+|+++|+.+.++| +|+||||++| |.+|.|.+.|| ++.+++.|++++||++++ .||.+|++++
T Consensus 104 ~~~~~a~~~~~~~~~~d~ielN~~c---------P~~~~~g~~l~----~~~~~~~eiv~~vr~~~~-~pv~vKi~~~-- 167 (300)
T TIGR01037 104 EFAEVAEKLEKAPPYVDAYELNLSC---------PHVKGGGIAIG----QDPELSADVVKAVKDKTD-VPVFAKLSPN-- 167 (300)
T ss_pred HHHHHHHHHHhccCccCEEEEECCC---------CCCCCCccccc----cCHHHHHHHHHHHHHhcC-CCEEEECCCC--
Confidence 6788999988874 9999999999 77776555554 556799999999999983 4899999862
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc---c-------------cccCCC----chhhHHHHhhcCCcEE
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT---R-------------EEKSEC----PHSLLPMRKAFKGTFL 321 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~---~-------------~~~~~~----~~~~~~ir~~~~~pvi 321 (399)
.++..++++.++++|+|+|+++.+.... . ...+.. ..++..+++++++|||
T Consensus 168 ---------~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi 238 (300)
T TIGR01037 168 ---------VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPII 238 (300)
T ss_pred ---------hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEE
Confidence 2456789999999999999987432110 0 011111 2567788999999999
Q ss_pred EeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCC
Q 015862 322 VAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNA 363 (399)
Q Consensus 322 ~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~ 363 (399)
++|++ |+++|.++|+.| ||+|++||+++.||+|+++++++.
T Consensus 239 ~~GGI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 239 GVGGITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred EECCCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHH
Confidence 99999 999999999988 999999999999999999999875
No 25
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.94 E-value=6e-26 Score=222.06 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCccc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~ 262 (399)
+.|++||+.+.++|||+|+||+|| |..+.+.+.||++|.++.+++.++++++|++++ .||+||++...+
T Consensus 67 ~~~~~aA~~~~~~g~d~IDlN~GC---------P~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~-~PVsvKiR~g~~- 135 (318)
T TIGR00742 67 NDLAKCAKIAEKRGYDEINLNVGC---------PSDRVQNGNFGACLMGNADLVADCVKAMQEAVN-IPVTVKHRIGID- 135 (318)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC---------CHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC-CCeEEEEecCCC-
Confidence 458999999999999999999999 899999999999999999999999999999985 388888876211
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc-cccccc-------CCCchhhHHHHhhc-CCcEEEeCCC-CHHHHH
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRM-KTREEK-------SECPHSLLPMRKAF-KGTFLVAGGY-DREDGN 332 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~-~~~~~~-------~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~ 332 (399)
..++.++..++++.|++.|++.|.||.++. .+.+.. +..++.+..+++.+ ++|||+||++ |++++.
T Consensus 136 ----~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~ 211 (318)
T TIGR00742 136 ----PLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIK 211 (318)
T ss_pred ----CcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHH
Confidence 112446778999999999999999998863 222211 12466788899988 7999999999 999999
Q ss_pred HHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 333 KAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 333 ~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
++++ | ||.||+||+++.||+++.++.+
T Consensus 212 ~~l~-g-~dgVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 212 QHLS-H-VDGVMVGREAYENPYLLANVDR 238 (318)
T ss_pred HHHh-C-CCEEEECHHHHhCCHHHHHHHH
Confidence 9996 5 9999999999999999999875
No 26
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.94 E-value=2.1e-25 Score=217.12 Aligned_cols=245 Identities=16% Similarity=0.153 Sum_probs=180.2
Q ss_pred cccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCC-CCCCC----------CCCCCCHH
Q 015862 36 YKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTA-QGNPN----------TPSIWTKE 104 (399)
Q Consensus 36 ~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g-~~~~~----------~~~l~~d~ 104 (399)
.++++++|+|+|+.|+= .++ +...+..+.... |+|.++++.+...+.. ...|. ..++.++.
T Consensus 2 ~~~~G~~~~nP~~~aag-----~~~--~~~~~~~~~~~g-~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g 73 (296)
T cd04740 2 VELAGLRLKNPVILASG-----TFG--FGEELSRVADLG-KLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPG 73 (296)
T ss_pred eEECCEEcCCCCEECCC-----CCC--CHHHHHHHHhcC-CceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcC
Confidence 56889999999999842 122 343333333222 4899999987766532 22221 23445544
Q ss_pred HHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHH
Q 015862 105 QVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVND 184 (399)
Q Consensus 105 ~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~ 184 (399)
....++++.+..++.+.++++||... .+++
T Consensus 74 ~~~~~~~~~~~~~~~~~p~ivsi~g~--------------------------------------------------~~~~ 103 (296)
T cd04740 74 VEAFLEELLPWLREFGTPVIASIAGS--------------------------------------------------TVEE 103 (296)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEecC--------------------------------------------------CHHH
Confidence 44555666666666788999999520 0367
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
|+++|+++.++|||+||||.+| |.+|.|.+.||++ .+++.|++++||++++ -||++|++++
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~c---------P~~~~~g~~~~~~----~~~~~eiv~~vr~~~~-~Pv~vKl~~~----- 164 (296)
T cd04740 104 FVEVAEKLADAGADAIELNISC---------PNVKGGGMAFGTD----PEAVAEIVKAVKKATD-VPVIVKLTPN----- 164 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCC---------CCCCCCcccccCC----HHHHHHHHHHHHhccC-CCEEEEeCCC-----
Confidence 9999999999999999999665 8888886667654 5899999999999983 4899999873
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc----c----c--------cccC----CCchhhHHHHhhcCCcEEEeC
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMK----T----R--------EEKS----ECPHSLLPMRKAFKGTFLVAG 324 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~----~----~--------~~~~----~~~~~~~~ir~~~~~pvi~~G 324 (399)
.++..++++.+++.|+|.|.++..... . + ...+ ..+.+++.+++.+++|||++|
T Consensus 165 ------~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~G 238 (296)
T cd04740 165 ------VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVG 238 (296)
T ss_pred ------chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEEC
Confidence 124678899999999999887532110 0 0 0111 123577889999999999999
Q ss_pred CC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 325 GY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 325 gi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
++ |++++.++|+.| ||+|++||+++.||++++++++|..
T Consensus 239 GI~~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 239 GIASGEDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred CCCCHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHH
Confidence 99 899999999998 9999999999999999999998854
No 27
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.93 E-value=3.2e-24 Score=209.27 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=175.4
Q ss_pred ccccCCeeeCCceeeCC-CCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCC-CCCCCC----------CCCCC
Q 015862 35 PYKMGNFNLSHRVVLAP-LTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNT-AQGNPN----------TPSIW 101 (399)
Q Consensus 35 P~~ig~~~lkNRiv~ap-m~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~-g~~~~~----------~~~l~ 101 (399)
+..+.+++|+|+|+.++ +... +.++++++ +. |+|.|++..+...+. |...|. ..++.
T Consensus 3 ~~~~~G~~~~nPv~~aag~~~~-------~~~~~~~~---~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~ 72 (301)
T PRK07259 3 SVELPGLKLKNPVMPASGTFGF-------GGEYARFY---DLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQ 72 (301)
T ss_pred ceEECCEECCCCcEECCcCCCC-------CHHHHHHh---hhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCC
Confidence 46788999999999987 3321 23444433 33 799999998766653 222221 12233
Q ss_pred CHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHH
Q 015862 102 TKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQI 181 (399)
Q Consensus 102 ~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~i 181 (399)
+...-..++.+.+..++.+.++++||.- . .
T Consensus 73 ~~g~~~~~~~~~~~~~~~~~p~i~si~g-------------------------------------~-~------------ 102 (301)
T PRK07259 73 NPGVDAFIEEELPWLEEFDTPIIANVAG-------------------------------------S-T------------ 102 (301)
T ss_pred CcCHHHHHHHHHHHHhccCCcEEEEecc-------------------------------------C-C------------
Confidence 3222223344445455567888999841 0 0
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEccccchhhhhcccCcccCCCCCC-CCchhhhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 015862 182 VNDFRLAARNAIEAG-FDGVELHGAHGYLIDQFLKDQVNDRTDQY-GGSLENRCRFALEIVEAVSNEIGADRVGIRLSPF 259 (399)
Q Consensus 182 i~~f~~aA~~a~~aG-fDgVeIh~~~GyLl~qFlSp~~N~R~D~y-GGslenR~r~~~eii~avR~~vg~~~v~vrls~~ 259 (399)
.++|+++|++++++| ||+||||++| |.. .. |..+.++.+++.|++++||+++ +.||++|++++
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~c---------P~~-----~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~ 167 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISC---------PNV-----KHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPN 167 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCC---------CCC-----CCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCC
Confidence 367999999999999 9999999988 432 12 3467788999999999999998 34899999972
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc---c-------------cc----cCCCchhhHHHHhhcCCc
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT---R-------------EE----KSECPHSLLPMRKAFKGT 319 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~---~-------------~~----~~~~~~~~~~ir~~~~~p 319 (399)
.++..++++.|++.|+|.|+++...... . .. .+..+++++.+++.+++|
T Consensus 168 -----------~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ip 236 (301)
T PRK07259 168 -----------VTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIP 236 (301)
T ss_pred -----------chhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCC
Confidence 2356789999999999999875322110 0 00 011346778899999999
Q ss_pred EEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 320 FLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 320 vi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
|+++|++ |+++++++|+.| +|+|++||+++.||+|++++++|..
T Consensus 237 vi~~GGI~~~~da~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~ 281 (301)
T PRK07259 237 IIGMGGISSAEDAIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLE 281 (301)
T ss_pred EEEECCCCCHHHHHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHH
Confidence 9999999 899999999998 9999999999999999999999863
No 28
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.90 E-value=9.8e-22 Score=190.62 Aligned_cols=242 Identities=14% Similarity=0.145 Sum_probs=174.4
Q ss_pred ccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCC-CCCCCCC------------------
Q 015862 37 KMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNT-AQGNPNT------------------ 97 (399)
Q Consensus 37 ~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~-g~~~~~~------------------ 97 (399)
++.+++|||+|+.|+-... -+.++++++.. + |+|.+++..+...+. +...|..
T Consensus 2 ~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~-~-g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n 73 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLL------KTGELIARAAA-A-GFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILN 73 (289)
T ss_pred eECCEECCCCCEeCCCCCC------CCHHHHHHHHH-c-CCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEee
Confidence 5778999999999987541 13444444432 2 789999887766532 4332221
Q ss_pred -CCCCCHHHHhhhHHHHHHHHH--cCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCC
Q 015862 98 -PSIWTKEQVEAWKPIVDAVHA--KGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLR 174 (399)
Q Consensus 98 -~~l~~d~~i~~~~~l~~~vh~--~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt 174 (399)
.++ ...-++.|.+.....++ .+.++++||...
T Consensus 74 ~~g~-~~~g~~~~~~~i~~~~~~~~~~pvi~si~g~-------------------------------------------- 108 (289)
T cd02810 74 SFGL-PNLGLDVWLQDIAKAKKEFPGQPLIASVGGS-------------------------------------------- 108 (289)
T ss_pred cCCC-CCcCHHHHHHHHHHHHhccCCCeEEEEeccC--------------------------------------------
Confidence 112 22224444444444444 477888888521
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE
Q 015862 175 TDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI 254 (399)
Q Consensus 175 ~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v 254 (399)
-.++|.++|+.+.++|+|+||||++| |..+. +..+.++.+++.|++++||+++ +.+|++
T Consensus 109 ------~~~~~~~~a~~~~~~G~d~ielN~~c---------P~~~~-----~~~~~~~~~~~~eiv~~vr~~~-~~pv~v 167 (289)
T cd02810 109 ------SKEDYVELARKIERAGAKALELNLSC---------PNVGG-----GRQLGQDPEAVANLLKAVKAAV-DIPLLV 167 (289)
T ss_pred ------CHHHHHHHHHHHHHhCCCEEEEEcCC---------CCCCC-----CcccccCHHHHHHHHHHHHHcc-CCCEEE
Confidence 01468999999999999999999998 55443 2347788999999999999998 348999
Q ss_pred EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------c---ccC----CCchhhHHHHh
Q 015862 255 RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------E---EKS----ECPHSLLPMRK 314 (399)
Q Consensus 255 rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~---~~~----~~~~~~~~ir~ 314 (399)
|+++. .+.++..++++.+++.|+|+|+++.+..... . ... ..+++++.+++
T Consensus 168 Kl~~~---------~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~ 238 (289)
T cd02810 168 KLSPY---------FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAA 238 (289)
T ss_pred EeCCC---------CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHH
Confidence 99973 2456688999999999999999875432100 0 000 02346788999
Q ss_pred hc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhC
Q 015862 315 AF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELN 362 (399)
Q Consensus 315 ~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g 362 (399)
.+ ++||+++||+ |++++.++|+.| ||+|++||+++.| |+|+++++++
T Consensus 239 ~~~~~ipiia~GGI~~~~da~~~l~~G-Ad~V~vg~a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 239 RLQLDIPIIGVGGIDSGEDVLEMLMAG-ASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHcC-ccHheEcHHHHhcCccHHHHHhcC
Confidence 98 8999999999 899999999998 9999999999999 9999999863
No 29
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.89 E-value=3.7e-23 Score=202.24 Aligned_cols=166 Identities=22% Similarity=0.241 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCccc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~ 262 (399)
+.+++||+.+.+.|||+|+||+|| |..-.....+|+.|......+.++|+++|++++ .+|++|++..
T Consensus 66 ~~~~~aa~~~~~~~~~~IDlN~GC---------P~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~g--- 132 (309)
T PF01207_consen 66 EDLAEAAEIVAELGFDGIDLNMGC---------PAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRLG--- 132 (309)
T ss_dssp HHHHHHHHHHCCTT-SEEEEEE------------SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEESE---
T ss_pred HHHHHHHHhhhccCCcEEeccCCC---------CHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEecccc---
Confidence 457999999999999999999999 555555567899999999999999999999986 4777777762
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRAD 341 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 341 (399)
+.++.+++.++++.|+++|+++|.||.++..+.+....+|+.++.+++.+++||++||++ |+++++++++...||
T Consensus 133 ----~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~d 208 (309)
T PF01207_consen 133 ----WDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGAD 208 (309)
T ss_dssp ----CT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SS
T ss_pred ----cccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCc
Confidence 233456789999999999999999999987777777788999999999999999999999 999999999986699
Q ss_pred EEEechHHhhCCcHHH---HHHhCCCC
Q 015862 342 LVVYGRLFLANPDLPR---RFELNAPL 365 (399)
Q Consensus 342 ~V~~gR~~iadPdl~~---k~~~g~~~ 365 (399)
.||+||+++.||+++. .+..|...
T Consensus 209 gvMigRgal~nP~lf~~~~~~~~~~~~ 235 (309)
T PF01207_consen 209 GVMIGRGALGNPWLFREIDQIKEGEPE 235 (309)
T ss_dssp EEEESHHHCC-CCHHCHHHCHHHHTT-
T ss_pred EEEEchhhhhcCHHhhhhhhhccCCCC
Confidence 9999999999999999 56665543
No 30
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.85 E-value=2e-20 Score=175.78 Aligned_cols=225 Identities=12% Similarity=0.090 Sum_probs=161.0
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCC------CCCCCCCCHHHHhhhHHHHHHHHHc
Q 015862 46 RVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGN------PNTPSIWTKEQVEAWKPIVDAVHAK 119 (399)
Q Consensus 46 Riv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~------~~~~~l~~d~~i~~~~~l~~~vh~~ 119 (399)
++++|||.. . |+. .|-...++.+|+.+.+++..+.+.... .+-..+..+...+.+++....++..
T Consensus 1 ~~~lApMag------~-td~--~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~ 71 (233)
T cd02911 1 PVALASMAG------I-TDG--DFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDS 71 (233)
T ss_pred CceeeecCC------C-cCH--HHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhcc
Confidence 578999965 2 332 223334446788888887765321100 0001122223667777777778888
Q ss_pred CCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCE
Q 015862 120 GGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDG 199 (399)
Q Consensus 120 g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDg 199 (399)
+.++++||... .| +.++++|+.+.+ ++|+
T Consensus 72 ~~p~~vqi~g~--------------------------------------~~------------~~~~~aa~~~~~-~~~~ 100 (233)
T cd02911 72 NVLVGVNVRSS--------------------------------------SL------------EPLLNAAALVAK-NAAI 100 (233)
T ss_pred CCeEEEEecCC--------------------------------------CH------------HHHHHHHHHHhh-cCCE
Confidence 89999999510 11 346899998877 4699
Q ss_pred EEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHH
Q 015862 200 VELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAE 279 (399)
Q Consensus 200 VeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~ 279 (399)
||||++| |........+|..+......+.+++++||+ + +-||++|++.. + + ++..++++
T Consensus 101 ielN~gC---------P~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~-~~pVsvKir~g-------~--~-~~~~~la~ 159 (233)
T cd02911 101 LEINAHC---------RQPEMVEAGAGEALLKDPERLSEFIKALKE-T-GVPVSVKIRAG-------V--D-VDDEELAR 159 (233)
T ss_pred EEEECCC---------CcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c-CCCEEEEEcCC-------c--C-cCHHHHHH
Confidence 9999999 554434555677788889999999999998 4 34899999983 1 1 45678999
Q ss_pred hhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHH
Q 015862 280 SLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 280 ~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
.|+++|+|+||++..... ....++.++.++ +++|||++|++ |+++++++|+.| ||+|++||+ .+|++++.
T Consensus 160 ~l~~aG~d~ihv~~~~~g----~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~--~~p~~~~~ 230 (233)
T cd02911 160 LIEKAGADIIHVDAMDPG----NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA--SLPENIEW 230 (233)
T ss_pred HHHHhCCCEEEECcCCCC----CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC--CCchHHHH
Confidence 999999999998644211 123445555555 68999999999 899999999988 999999999 99999987
Q ss_pred HH
Q 015862 359 FE 360 (399)
Q Consensus 359 ~~ 360 (399)
+.
T Consensus 231 ~~ 232 (233)
T cd02911 231 LV 232 (233)
T ss_pred hh
Confidence 75
No 31
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.1e-21 Score=183.49 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
.+.+||+++...+ |||+||||| |..=.+...||..|.....++.|+|.+||+.++. +|.+||+.+
T Consensus 87 ~ll~Aa~lv~~y~-D~idlNcGC---------Pq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~-pVs~KIRI~---- 151 (358)
T KOG2335|consen 87 NLLKAARLVQPYC-DGIDLNCGC---------PQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNV-PVSVKIRIF---- 151 (358)
T ss_pred HHHHHHHHhhhhc-CcccccCCC---------CHHHHhcCCccceeccCHHHHHHHHHHHHhhcCC-CeEEEEEec----
Confidence 4699999998887 999999999 7777889999999999999999999999999975 677777763
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--ccCCCchhhHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCC
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--EKSECPHSLLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
.+.+++.++|+.++++|++++.||.++..+.. ..+..++.++.||+.++ +||++||+| ++++++.+++..+
T Consensus 152 -----~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG 226 (358)
T KOG2335|consen 152 -----VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTG 226 (358)
T ss_pred -----CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhC
Confidence 24677899999999999999999998765433 55678899999999998 999999999 8999999999656
Q ss_pred CcEEEechHHhhCCcHHHH
Q 015862 340 ADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 340 ~D~V~~gR~~iadPdl~~k 358 (399)
+|.||.||+++.||.++.-
T Consensus 227 ~dGVM~arglL~NPa~F~~ 245 (358)
T KOG2335|consen 227 ADGVMSARGLLYNPALFLT 245 (358)
T ss_pred CceEEecchhhcCchhhcc
Confidence 9999999999999999855
No 32
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.83 E-value=1.6e-19 Score=179.19 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=168.4
Q ss_pred ccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccC-CCCCCCCC------------CCCC
Q 015862 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVS-NTAQGNPN------------TPSI 100 (399)
Q Consensus 35 P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~-~~g~~~~~------------~~~l 100 (399)
+.++.|++|+|+|+.|+=. ++ +-+.++ +.+. |+|.|++..+... ..|...|. ..++
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~-----~~--~~~~~~---~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl 119 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGF-----DK--NGEAID---ALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGF 119 (344)
T ss_pred ceEECCEECCCCCEECCCC-----CC--ChHHHH---HHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCC
Confidence 5788999999999876632 22 122233 3334 7999999887664 23333332 1122
Q ss_pred CCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHH
Q 015862 101 WTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQ 180 (399)
Q Consensus 101 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ 180 (399)
-++. ++.|.+.....+ .+.+++++|..... ++ ...
T Consensus 120 ~n~g-~~~~~~~l~~~~-~~~pvivsI~~~~~------------------------------------~~-------~~~ 154 (344)
T PRK05286 120 NNDG-ADALAERLKKAY-RGIPLGINIGKNKD------------------------------------TP-------LED 154 (344)
T ss_pred CCHh-HHHHHHHHHHhc-CCCcEEEEEecCCC------------------------------------CC-------ccc
Confidence 2222 333333333333 56778888853210 00 001
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcc-cCCCCCCCCchhhhhHHHHHHHHHHHHHhCC----CceEEE
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQV-NDRTDQYGGSLENRCRFALEIVEAVSNEIGA----DRVGIR 255 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~-N~R~D~yGGslenR~r~~~eii~avR~~vg~----~~v~vr 255 (399)
..++|++.++.+.+ ++|++|||.+| |.+ |.|.++++ ..+.||+++||+++++ -||.||
T Consensus 155 ~~~d~~~~~~~~~~-~ad~lelN~sc---------P~~~g~~~~~~~-------~~~~eiv~aVr~~~~~~~~~~PV~vK 217 (344)
T PRK05286 155 AVDDYLICLEKLYP-YADYFTVNISS---------PNTPGLRDLQYG-------EALDELLAALKEAQAELHGYVPLLVK 217 (344)
T ss_pred CHHHHHHHHHHHHh-hCCEEEEEccC---------CCCCCcccccCH-------HHHHHHHHHHHHHHhccccCCceEEE
Confidence 24677888887754 79999999888 554 56666555 3456999999999984 489999
Q ss_pred ecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------cccC----CCchhhHHHHhhc--
Q 015862 256 LSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------EEKS----ECPHSLLPMRKAF-- 316 (399)
Q Consensus 256 ls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~~~~----~~~~~~~~ir~~~-- 316 (399)
++++ .+.++..++++.+++.|+|.|.++.+..... .... ..+.+++.+++++
T Consensus 218 lsp~---------~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~ 288 (344)
T PRK05286 218 IAPD---------LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGG 288 (344)
T ss_pred eCCC---------CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCC
Confidence 9973 2345678899999999999999987642110 0001 1245778899988
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhC
Q 015862 317 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELN 362 (399)
Q Consensus 317 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g 362 (399)
++||+++||+ |++++.++|..| ||+|++||+++.+ |+++.+++++
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aG-Ad~V~v~~~~~~~gP~~~~~i~~~ 335 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAG-ASLVQIYSGLIYEGPGLVKEIVRG 335 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC-CCHHHHHHHHHHhCchHHHHHHHH
Confidence 7899999999 999999999988 9999999999885 9999999875
No 33
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.83 E-value=4.4e-19 Score=174.74 Aligned_cols=243 Identities=19% Similarity=0.174 Sum_probs=168.6
Q ss_pred ccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccC---CCCCCCCC--------------
Q 015862 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVS---NTAQGNPN-------------- 96 (399)
Q Consensus 35 P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~---~~g~~~~~-------------- 96 (399)
++++.+++|+|.|+.|+-+-. -+.+.+.. ... |+|-|++..+... ..|...|.
T Consensus 3 ~v~~~Gl~l~nPv~~ASg~~~------~~~e~~~~---~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~ 73 (325)
T cd04739 3 STTYLGLSLKNPLVASASPLS------RNLDNIRR---LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSY 73 (325)
T ss_pred eEEECCEecCCCCEeCCcCCC------CCHHHHHH---HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccc
Confidence 357889999999999643221 12333333 222 7898888876544 23333322
Q ss_pred --CCCCCCHHHHhhhHHHHHHH-HHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCC
Q 015862 97 --TPSIWTKEQVEAWKPIVDAV-HAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRL 173 (399)
Q Consensus 97 --~~~l~~d~~i~~~~~l~~~v-h~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~m 173 (399)
..++.++ -++.|.+..... ++.+.++++|++- . .
T Consensus 74 in~~g~~n~-g~~~~~~~i~~~~~~~~~pvi~si~g-----~---------------------------------~---- 110 (325)
T cd04739 74 FPEYGRYNL-GPEEYLELIRRAKRAVSIPVIASLNG-----V---------------------------------S---- 110 (325)
T ss_pred cccccccCc-CHHHHHHHHHHHHhccCCeEEEEeCC-----C---------------------------------C----
Confidence 1122222 233333333333 2347889999841 0 0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceE
Q 015862 174 RTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVG 253 (399)
Q Consensus 174 t~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~ 253 (399)
.++|.++|+.+.++|+|+||||.+| .|.+.+.+|++++++ +.+++++||+++. -||.
T Consensus 111 --------~~~~~~~a~~~~~~gad~iElN~s~-----------~~~~~~~~g~~~~~~---~~eiv~~v~~~~~-iPv~ 167 (325)
T cd04739 111 --------AGGWVDYARQIEEAGADALELNIYA-----------LPTDPDISGAEVEQR---YLDILRAVKSAVT-IPVA 167 (325)
T ss_pred --------HHHHHHHHHHHHhcCCCEEEEeCCC-----------CCCCCCcccchHHHH---HHHHHHHHHhccC-CCEE
Confidence 1457899999999999999999987 356678889888754 6899999999984 3899
Q ss_pred EEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc-------------ccC----CCchhhHHHHhhc
Q 015862 254 IRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE-------------EKS----ECPHSLLPMRKAF 316 (399)
Q Consensus 254 vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~-------------~~~----~~~~~~~~ir~~~ 316 (399)
+|++++- .+..++++.+++.|+|.|.++.+...... ..+ ..+.+++.+++.+
T Consensus 168 vKl~p~~-----------~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~ 236 (325)
T cd04739 168 VKLSPFF-----------SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV 236 (325)
T ss_pred EEcCCCc-----------cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc
Confidence 9999731 23567888999999999998775421100 000 0124567788888
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhCCC
Q 015862 317 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELNAP 364 (399)
Q Consensus 317 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g~~ 364 (399)
++||+++||+ |.++|.++|..| ||+|++||+++.+ |+++.++.++..
T Consensus 237 ~ipIig~GGI~s~~Da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~ 285 (325)
T cd04739 237 KASLAASGGVHDAEDVVKYLLAG-ADVVMTTSALLRHGPDYIGTLLAGLE 285 (325)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC-CCeeEEehhhhhcCchHHHHHHHHHH
Confidence 9999999999 999999999987 9999999999995 999999888753
No 34
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.83 E-value=5.8e-19 Score=172.10 Aligned_cols=248 Identities=14% Similarity=0.100 Sum_probs=173.1
Q ss_pred ccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccC-C-CCCCCCC----------CCCCCC
Q 015862 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVS-N-TAQGNPN----------TPSIWT 102 (399)
Q Consensus 35 P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~-~-~g~~~~~----------~~~l~~ 102 (399)
++++++++|||.|+.|+=.. ++ +.+.+.++... |+|.+++..+... + .+...|. ..++.+
T Consensus 3 ~~~~~Gl~l~nPi~~aag~~----~~--~~~~~~~~~~~--G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 3 SVTFCGIKFPNPFGLASAPP----TT--SYPMIRRAFEA--GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred ceEECCEEcCCCCEeCCcCC----CC--CHHHHHHHHHh--CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 46788999999999998321 11 23444444322 7899999887776 3 4432221 112222
Q ss_pred -----HHHHhhhHHHHHHHHHc--CCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCCh
Q 015862 103 -----KEQVEAWKPIVDAVHAK--GGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRT 175 (399)
Q Consensus 103 -----d~~i~~~~~l~~~vh~~--g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~ 175 (399)
+.-++.|.+.+...++. +.++++|++-. . .
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~------------------------------------~-~------ 111 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCE------------------------------------Y-N------ 111 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCC------------------------------------C-C------
Confidence 12233443334333332 46788888510 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE
Q 015862 176 DEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR 255 (399)
Q Consensus 176 ~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr 255 (399)
.++|+++|+++.++|+|+||||++| |.. .-...+|..+......+.+++++||+.+. -||.||
T Consensus 112 ------~~~~~~~a~~~~~~gad~ielN~sC---------P~~-~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vK 174 (299)
T cd02940 112 ------KEDWTELAKLVEEAGADALELNFSC---------PHG-MPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAK 174 (299)
T ss_pred ------HHHHHHHHHHHHhcCCCEEEEECCC---------CCC-CCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEE
Confidence 1578999999999999999999999 443 12234677788888999999999999884 389999
Q ss_pred ecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc---------------------cccccCCC----chhhH
Q 015862 256 LSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMK---------------------TREEKSEC----PHSLL 310 (399)
Q Consensus 256 ls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~---------------------~~~~~~~~----~~~~~ 310 (399)
++++ .++..++++.+++.|+|.|.++..... ..+...+. ++++.
T Consensus 175 l~~~-----------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~ 243 (299)
T cd02940 175 LTPN-----------ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVS 243 (299)
T ss_pred CCCC-----------chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHH
Confidence 9973 123567899999999999876532211 01111222 56788
Q ss_pred HHHhhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CCcHHHHHHhC
Q 015862 311 PMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA-NPDLPRRFELN 362 (399)
Q Consensus 311 ~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia-dPdl~~k~~~g 362 (399)
.+++++ ++|||++||+ |.+++.++|..| ||+|+++|+++. .|+++.++.++
T Consensus 244 ~~~~~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 244 QIARAPEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred HHHHhcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeecccCCcHHHHHhhh
Confidence 899999 8999999999 899999999988 999999999888 99999998875
No 35
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.81 E-value=1.1e-18 Score=172.11 Aligned_cols=248 Identities=16% Similarity=0.110 Sum_probs=166.2
Q ss_pred ccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCC-CCCCCCC------------CCCCC
Q 015862 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSN-TAQGNPN------------TPSIW 101 (399)
Q Consensus 35 P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~-~g~~~~~------------~~~l~ 101 (399)
+.++.|++|||.|+.|+=. ++ +-+.+.++. .+ |+|.|++..+...+ .|...|. ..++-
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~-----~~--~~~~~~~~~-~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~ 110 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGF-----DK--NAEAIDALL-AL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFN 110 (327)
T ss_pred ceEECCEECCCCCEeCcCC-----CC--CHHHHHHHH-HC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCC
Confidence 5778899999999776532 21 223344433 23 79999998776653 3333222 11222
Q ss_pred CHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHH
Q 015862 102 TKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQI 181 (399)
Q Consensus 102 ~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~i 181 (399)
++. ++.|.+........+.++++||.... + +++.+.
T Consensus 111 n~g-~~~~~~~l~~~~~~~~plivsi~g~~--------------------------------------~-----~~~~~~ 146 (327)
T cd04738 111 NDG-ADAVAKRLKKRRPRGGPLGVNIGKNK--------------------------------------D-----TPLEDA 146 (327)
T ss_pred Ccc-HHHHHHHHHHhccCCCeEEEEEeCCC--------------------------------------C-----Cccccc
Confidence 221 22222111111124678888885210 0 012345
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcc-cCCCCCCCCchhhhhHHHHHHHHHHHHHhC---C-CceEEEe
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQV-NDRTDQYGGSLENRCRFALEIVEAVSNEIG---A-DRVGIRL 256 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~-N~R~D~yGGslenR~r~~~eii~avR~~vg---~-~~v~vrl 256 (399)
+++|++.++.+.. ++|+||||.+| |.+ +.|.+ .....+.+++++||+++. . .||.||+
T Consensus 147 ~~d~~~~~~~~~~-~ad~ielN~sc---------P~~~g~~~~-------~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl 209 (327)
T cd04738 147 VEDYVIGVRKLGP-YADYLVVNVSS---------PNTPGLRDL-------QGKEALRELLTAVKEERNKLGKKVPLLVKI 209 (327)
T ss_pred HHHHHHHHHHHHh-hCCEEEEECCC---------CCCCccccc-------cCHHHHHHHHHHHHHHHhhcccCCCeEEEe
Confidence 6788888888765 59999999998 432 33332 234567899999999985 2 3899999
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------cccC----CCchhhHHHHhhc--C
Q 015862 257 SPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------EEKS----ECPHSLLPMRKAF--K 317 (399)
Q Consensus 257 s~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~~~~----~~~~~~~~ir~~~--~ 317 (399)
+++ .+.++..++++.+++.|+|+|.++.+..... .... ..+.++..+++.+ +
T Consensus 210 ~~~---------~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ 280 (327)
T cd04738 210 APD---------LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGK 280 (327)
T ss_pred CCC---------CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCC
Confidence 973 2345678899999999999999887542110 0111 1246778899998 7
Q ss_pred CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhC
Q 015862 318 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELN 362 (399)
Q Consensus 318 ~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g 362 (399)
+||+++||+ |++++.++|..| ||+|++||+++.+ |+++.++.++
T Consensus 281 ipIi~~GGI~t~~da~e~l~aG-Ad~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIRAG-ASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred CcEEEECCCCCHHHHHHHHHcC-CCHHhccHHHHhhCcHHHHHHHhc
Confidence 899999999 999999999988 9999999999886 9999999875
No 36
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.80 E-value=4.9e-18 Score=168.06 Aligned_cols=154 Identities=23% Similarity=0.234 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
+|.+.|+.+.++|+|+||||.+| .|.+.+.+|+..+++ +.+++++||+++. -||.+|++++
T Consensus 115 e~~~~a~~~~~agad~ielN~sc-----------pp~~~~~~g~~~~~~---~~eil~~v~~~~~-iPV~vKl~p~---- 175 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYY-----------LPTDPDISGAEVEQR---YLDILRAVKSAVS-IPVAVKLSPY---- 175 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCC-----------CCCCCCCccccHHHH---HHHHHHHHHhccC-CcEEEEeCCC----
Confidence 57899999999999999999977 334567777776654 5899999999873 3899999873
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc---c----------cCC----CchhhHHHHhhcCCcEEEeCCC
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE---E----------KSE----CPHSLLPMRKAFKGTFLVAGGY 326 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~---~----------~~~----~~~~~~~ir~~~~~pvi~~Ggi 326 (399)
..+..++++.|++.|+|.|.++.+...... . .+. .+.++..+++++++|||++||+
T Consensus 176 -------~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI 248 (334)
T PRK07565 176 -------FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGV 248 (334)
T ss_pred -------chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCC
Confidence 123567899999999999998866421100 0 000 1245667888889999999999
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhCCC
Q 015862 327 -DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELNAP 364 (399)
Q Consensus 327 -t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g~~ 364 (399)
|.++|.++|..| ||+|+++|+++.+ |+++.++.++..
T Consensus 249 ~s~~Da~e~l~aG-A~~V~v~t~~~~~g~~~~~~i~~~L~ 287 (334)
T PRK07565 249 HDAEDVIKMLLAG-ADVVMIASALLRHGPDYIGTILRGLE 287 (334)
T ss_pred CCHHHHHHHHHcC-CCceeeehHHhhhCcHHHHHHHHHHH
Confidence 999999999988 9999999999996 999999888753
No 37
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.78 E-value=1.3e-17 Score=155.66 Aligned_cols=207 Identities=13% Similarity=0.060 Sum_probs=153.2
Q ss_pred HHHHhhcCCCcEEEEcccccCCCC---------CCCCCCCCCCCH-HHHhhhHHHHHHHHHcCCeEEEecccCCCccCCC
Q 015862 68 LYYSQRTTKGGFLIAEATGVSNTA---------QGNPNTPSIWTK-EQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD 137 (399)
Q Consensus 68 ~~y~~~a~g~Glii~e~~~V~~~g---------~~~~~~~~l~~d-~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~ 137 (399)
+|-...+..+|+++.++..++... ++... .+++. .....+.+-.+.++ .+.++++|+.+.
T Consensus 8 ~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~e--f~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~------- 77 (231)
T TIGR00736 8 EFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKE--FSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFV------- 77 (231)
T ss_pred HHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcc--cCcCcccHHHHHHHHHHHHh-hcCCEEEEEecC-------
Confidence 444444436899999999887531 11111 13442 33344555666665 455899999531
Q ss_pred CCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCc
Q 015862 138 YQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQ 217 (399)
Q Consensus 138 ~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~ 217 (399)
+ .++|.++|+.+.+ ++|+||||++| |.
T Consensus 78 -------------------------------~------------~ee~~~~a~~v~~-~~d~IdiN~gC---------P~ 104 (231)
T TIGR00736 78 -------------------------------D------------LEEAYDVLLTIAE-HADIIEINAHC---------RQ 104 (231)
T ss_pred -------------------------------C------------HHHHHHHHHHHhc-CCCEEEEECCC---------Cc
Confidence 1 1457888888755 89999999999 66
Q ss_pred ccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc
Q 015862 218 VNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMK 297 (399)
Q Consensus 218 ~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~ 297 (399)
.....-.+|..+......+.++++++|+. + -||+||+++.. +..+...+++.++++|+|+|+|+....+
T Consensus 105 ~~v~~~g~G~~Ll~dp~~l~~iv~av~~~-~-~PVsvKiR~~~---------~~~~~~~~a~~l~~aGad~i~Vd~~~~g 173 (231)
T TIGR00736 105 PEITEIGIGQELLKNKELLKEFLTKMKEL-N-KPIFVKIRGNC---------IPLDELIDALNLVDDGFDGIHVDAMYPG 173 (231)
T ss_pred HHHcCCCCchhhcCCHHHHHHHHHHHHcC-C-CcEEEEeCCCC---------CcchHHHHHHHHHHcCCCEEEEeeCCCC
Confidence 65666677888888999999999999943 2 38999999831 1234678999999999999999743211
Q ss_pred cccccCCCchhhHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 298 TREEKSECPHSLLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 298 ~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
.....++.++.++++++ +|||++|++ |+++|.++++.| ||+|++||+++.+
T Consensus 174 ---~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~VmvgR~~l~~ 226 (231)
T TIGR00736 174 ---KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSVARAILKG 226 (231)
T ss_pred ---CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEEcHhhccC
Confidence 12246788999999995 999999999 999999999987 9999999999865
No 38
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.74 E-value=1.7e-16 Score=161.82 Aligned_cols=247 Identities=13% Similarity=0.046 Sum_probs=168.1
Q ss_pred ccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCC-CCC----------CCC---
Q 015862 35 PYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGN-PNT----------PSI--- 100 (399)
Q Consensus 35 P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~-~~~----------~~l--- 100 (399)
+.++.|++|||.|+.|+=.... . .+.+.+++. + |+|.|++..+. .+.|... |.. +++
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~---~--~~~~~~~~~--~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTN---K--YYNVARAFE--A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCC---C--HHHHHHHHH--h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCc
Confidence 5678899999999998653211 1 244444443 3 78988888665 4344433 211 111
Q ss_pred --CCHHHHhhhHHHHHHHHH-c-CCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChh
Q 015862 101 --WTKEQVEAWKPIVDAVHA-K-GGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTD 176 (399)
Q Consensus 101 --~~d~~i~~~~~l~~~vh~-~-g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~ 176 (399)
+++..++.|.+.+..+++ . +.++++||+.. ..
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~-------------------------------------~~------- 111 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVE-------------------------------------CN------- 111 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccC-------------------------------------CC-------
Confidence 222223333333333332 2 35677887510 00
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCc-ccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE
Q 015862 177 EIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQ-VNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR 255 (399)
Q Consensus 177 eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~-~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr 255 (399)
.++|++.|+.+.++|+|+||||.+| |. .+.| .+|..+......+.+|+++||+.+. -||.||
T Consensus 112 -----~~~~~~~a~~~~~~g~d~ielN~sc---------P~~~~~~--~~g~~~~~~~~~~~~i~~~v~~~~~-~Pv~vK 174 (420)
T PRK08318 112 -----EEEWKEIAPLVEETGADGIELNFGC---------PHGMSER--GMGSAVGQVPELVEMYTRWVKRGSR-LPVIVK 174 (420)
T ss_pred -----HHHHHHHHHHHHhcCCCEEEEeCCC---------CCCcccc--CCcccccCCHHHHHHHHHHHHhccC-CcEEEE
Confidence 1458899999999999999999999 44 2222 3567777888999999999999873 389999
Q ss_pred ecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc---------------------cccccCC----CchhhH
Q 015862 256 LSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMK---------------------TREEKSE----CPHSLL 310 (399)
Q Consensus 256 ls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~---------------------~~~~~~~----~~~~~~ 310 (399)
|+++. .+..++++.+++.|+|.|.+...... ..+..++ .+.++.
T Consensus 175 l~p~~-----------~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~ 243 (420)
T PRK08318 175 LTPNI-----------TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVA 243 (420)
T ss_pred cCCCc-----------ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHH
Confidence 99731 12467889999999998875332111 0011122 256777
Q ss_pred HHHhhc---CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CCcHHHHHHhCC
Q 015862 311 PMRKAF---KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA-NPDLPRRFELNA 363 (399)
Q Consensus 311 ~ir~~~---~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia-dPdl~~k~~~g~ 363 (399)
.+++++ ++|||++||+ |.++|.++|..| ||+|+++|+++. +|+++.++..+.
T Consensus 244 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 244 EIARDPETRGLPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred HHHhccccCCCCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHH
Confidence 888887 7899999999 999999999988 999999999998 899999988874
No 39
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.74 E-value=3.1e-16 Score=152.48 Aligned_cols=241 Identities=15% Similarity=0.145 Sum_probs=159.8
Q ss_pred ccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcCCCcEEEEcccccCCC-CCCCCCC----------CCCCCHHH
Q 015862 37 KMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGFLIAEATGVSNT-AQGNPNT----------PSIWTKEQ 105 (399)
Q Consensus 37 ~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~-g~~~~~~----------~~l~~d~~ 105 (399)
++.+++|||.|+.|+=... . +.+.+..+.+ + |+|-|++..+...+. |...|+. .++-+ .-
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~----~--~~e~~~~~~~-~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n-~g 72 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWC----T--TLEDLLELAA-S-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPN-LG 72 (294)
T ss_pred ccCCeeCCCCCEECCCCCC----C--CHHHHHHHHH-c-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCC-cC
Confidence 5779999999999876421 1 3334444333 3 789999887665533 4333321 22222 22
Q ss_pred HhhhHHHHHHHH----HcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHH
Q 015862 106 VEAWKPIVDAVH----AKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQI 181 (399)
Q Consensus 106 i~~~~~l~~~vh----~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~i 181 (399)
++.|.+.....+ +.+.++++||+. .
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g--------------------------------------~------------- 101 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTG--------------------------------------S------------- 101 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCC--------------------------------------C-------------
Confidence 333333333332 246778888841 0
Q ss_pred HHHHHHHHHHHHHh---CCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecC
Q 015862 182 VNDFRLAARNAIEA---GFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSP 258 (399)
Q Consensus 182 i~~f~~aA~~a~~a---GfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~ 258 (399)
.++|+++|++..+. |+|+||||.+| |.+- . ++++-.....+.+++++||+++. -||.|||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sC---------Pn~~--~---~~~~~~~~~~~~~i~~~v~~~~~-iPv~vKl~p 166 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSC---------PNVP--G---KPPPAYDFDATLEYLTAVKAAYS-IPVGVKTPP 166 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCC---------CCCC--C---cccccCCHHHHHHHHHHHHHhcC-CCEEEEeCC
Confidence 14578888888775 79999999999 4331 1 11222345689999999999984 389999998
Q ss_pred CcccCCCCCCChHHHHHHHHHhhhhh--CceEEEEeCCCc-----c----c-------ccccCC-------CchhhHHHH
Q 015862 259 FANYMESGDSNPEALGLYMAESLNKY--GILYCHMVEPRM-----K----T-------REEKSE-------CPHSLLPMR 313 (399)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~~~Le~~--Gvd~l~v~~~~~-----~----~-------~~~~~~-------~~~~~~~ir 313 (399)
+. +.++..++++.+.+. |+|.|.++.... . . .+.... .+.+++.++
T Consensus 167 ~~---------~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~ 237 (294)
T cd04741 167 YT---------DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFR 237 (294)
T ss_pred CC---------CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHH
Confidence 41 334567889989888 899887542210 0 0 000000 123456777
Q ss_pred hhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CCcHHHHHHhC
Q 015862 314 KAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA-NPDLPRRFELN 362 (399)
Q Consensus 314 ~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia-dPdl~~k~~~g 362 (399)
++++ +|||++||+ |.+++.++|..| ||.|+++++++. +|+++.++.++
T Consensus 238 ~~~~~~ipIig~GGI~s~~da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 238 RLLPSEIQIIGVGGVLDGRGAFRMRLAG-ASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred HhcCCCCCEEEeCCCCCHHHHHHHHHcC-CCceeEchhhhhcCchHHHHHHHH
Confidence 8884 899999999 999999999987 999999999995 99999998765
No 40
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.62 E-value=8.9e-14 Score=137.45 Aligned_cols=155 Identities=16% Similarity=0.103 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhC------CCceEEE
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIG------ADRVGIR 255 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg------~~~v~vr 255 (399)
.++|++.++++.+ .+|+||||-.| | |......+ .....+.+++++||+++. .-||.+|
T Consensus 153 ~~dy~~~~~~~~~-~ad~iElNlSc---------P--n~~~~~~~----~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 153 KEDYAACLRKLGP-LADYLVVNVSS---------P--NTPGLRDL----QYKAELRDLLTAVKQEQDGLRRVHRVPVLVK 216 (335)
T ss_pred HHHHHHHHHHHhh-hCCEEEEEccC---------C--CCCCcccc----cCHHHHHHHHHHHHHHHHhhhhccCCceEEE
Confidence 4678888887766 59999999887 3 33222222 224678899999998875 1389999
Q ss_pred ecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc-----cc-----c---cCC----CchhhHHHHhhc--
Q 015862 256 LSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT-----RE-----E---KSE----CPHSLLPMRKAF-- 316 (399)
Q Consensus 256 ls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~-----~~-----~---~~~----~~~~~~~ir~~~-- 316 (399)
|+++ .+.++...+++.+++.|+|.|.+....... +. . .++ .+.++..+++.+
T Consensus 217 LsP~---------~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~ 287 (335)
T TIGR01036 217 IAPD---------LTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQG 287 (335)
T ss_pred eCCC---------CCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCC
Confidence 9984 233457789999999999998876543210 00 0 000 123556677777
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CCcHHHHHHhC
Q 015862 317 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA-NPDLPRRFELN 362 (399)
Q Consensus 317 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia-dPdl~~k~~~g 362 (399)
++|+|++||+ |++++.++|..| +|+|.++++++. +|+|+.++.++
T Consensus 288 ~ipiig~GGI~~~~da~e~l~aG-A~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 288 RLPIIGVGGISSAQDALEKIRAG-ASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC-CcHHHhhHHHHHhCchHHHHHHhh
Confidence 5899999999 999999999999 999999999988 59999999875
No 41
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.53 E-value=1.5e-12 Score=117.24 Aligned_cols=185 Identities=22% Similarity=0.260 Sum_probs=131.8
Q ss_pred HHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCC
Q 015862 64 PHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNG 142 (399)
Q Consensus 64 ~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~ 142 (399)
+...++++..+. |++++.++....++.+..... .+.+....|..+.++++|+.+.....
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 71 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD------------KEVLKEVAAETDLPLGVQLAINDAAA-------- 71 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc------------ccHHHHHHhhcCCcEEEEEccCCchh--------
Confidence 678888888887 788888887766655432111 14566677788999999997632110
Q ss_pred CCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCC
Q 015862 143 QAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRT 222 (399)
Q Consensus 143 ~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~ 222 (399)
. ...+|+.++++|+|+|+||+.|+|+
T Consensus 72 ------------------------~-----------------~~~~a~~~~~~g~d~v~l~~~~~~~------------- 97 (200)
T cd04722 72 ------------------------A-----------------VDIAAAAARAAGADGVEIHGAVGYL------------- 97 (200)
T ss_pred ------------------------h-----------------hhHHHHHHHHcCCCEEEEeccCCcH-------------
Confidence 0 0122889999999999999999876
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc
Q 015862 223 DQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK 302 (399)
Q Consensus 223 D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~ 302 (399)
+++..++++++|+.++..++.++++..... +.. .+.+.|+|++.++..........
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~---------~~~-----~~~~~g~d~i~~~~~~~~~~~~~ 153 (200)
T cd04722 98 ----------AREDLELIRELREAVPDVKVVVKLSPTGEL---------AAA-----AAEEAGVDEVGLGNGGGGGGGRD 153 (200)
T ss_pred ----------HHHHHHHHHHHHHhcCCceEEEEECCCCcc---------chh-----hHHHcCCCEEEEcCCcCCCCCcc
Confidence 588999999999998434799999864211 111 16778999998875533221111
Q ss_pred CC--CchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEech
Q 015862 303 SE--CPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 303 ~~--~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR 347 (399)
.. .......+++..++||+++||+ +++++.++++.| +|+|++||
T Consensus 154 ~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~vgs 200 (200)
T cd04722 154 AVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALG-ADGVIVGS 200 (200)
T ss_pred CchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEecC
Confidence 11 1134556667788999999999 679999999997 99999987
No 42
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.53 E-value=9.6e-13 Score=128.94 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhC-CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAG-FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aG-fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
++|.+.|+.+.++| +|+||||..| |.+-. .-.+|.+ ...+.+++++||+++. .||.+||+++
T Consensus 105 ~~~~~~a~~~~~~g~ad~iElN~Sc---------Pn~~~-~~~~g~d----~~~~~~i~~~v~~~~~-~Pv~vKlsp~-- 167 (310)
T PRK02506 105 EETHTILKKIQASDFNGLVELNLSC---------PNVPG-KPQIAYD----FETTEQILEEVFTYFT-KPLGVKLPPY-- 167 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCC---------CCCCC-ccccccC----HHHHHHHHHHHHHhcC-CccEEecCCC--
Confidence 45678888888898 8999999998 43211 1123333 3457999999999874 3899999984
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCC-----cc----ccc----------ccCC----CchhhHHHHhhc--
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPR-----MK----TRE----------EKSE----CPHSLLPMRKAF-- 316 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~-----~~----~~~----------~~~~----~~~~~~~ir~~~-- 316 (399)
. +.......+..+.+.|++.+...... .. .+. ..++ .+.++..+++.+
T Consensus 168 ------~-~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~ 240 (310)
T PRK02506 168 ------F-DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNP 240 (310)
T ss_pred ------C-CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCC
Confidence 1 23445556666667788876554320 00 000 0011 123455677777
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh-CCcHHHHHHhCCC
Q 015862 317 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA-NPDLPRRFELNAP 364 (399)
Q Consensus 317 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia-dPdl~~k~~~g~~ 364 (399)
++|||++||+ |.++|.++|..| +|+|.++.+++. +|+++.++.++..
T Consensus 241 ~ipIig~GGI~s~~da~e~i~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~ 289 (310)
T PRK02506 241 SIQIIGTGGVKTGRDAFEHILCG-ASMVQVGTALHKEGPAVFERLTKELK 289 (310)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC-CCHHhhhHHHHHhChHHHHHHHHHHH
Confidence 5899999999 899999999999 999999999998 7999999988753
No 43
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.52 E-value=3.3e-12 Score=127.70 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcc-cCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQV-NDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~-N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
++|.+.|+++.++|+|+||||..| |.+ +.|. .|..+......+.+|+++||+.+. -||.+||+++
T Consensus 127 ~~~~~~a~~~e~~GaD~iELNiSC---------Pn~~~~r~--~g~~~gq~~e~~~~i~~~Vk~~~~-iPv~vKLsPn-- 192 (385)
T PLN02495 127 DAWEEIIERVEETGVDALEINFSC---------PHGMPERK--MGAAVGQDCDLLEEVCGWINAKAT-VPVWAKMTPN-- 192 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---------CCCCCcCc--cchhhccCHHHHHHHHHHHHHhhc-CceEEEeCCC--
Confidence 568999999999999999999988 432 2232 355677788999999999999873 3899999984
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc----c---c--------c------CCCc----hhhHHHHhhc
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR----E---E--------K------SECP----HSLLPMRKAF 316 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~----~---~--------~------~~~~----~~~~~ir~~~ 316 (399)
..+...+++.+.+.|+|.|.+........ . . . ++.. ..+..+++.+
T Consensus 193 ---------~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~ 263 (385)
T PLN02495 193 ---------ITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMM 263 (385)
T ss_pred ---------hhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 22356788889999999887654322100 0 0 0 0000 1122344554
Q ss_pred ------CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhCCC
Q 015862 317 ------KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELNAP 364 (399)
Q Consensus 317 ------~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g~~ 364 (399)
++|++++||+ |.++|.+.|..| ||.|.++.+++.+ |+++.++.+|..
T Consensus 264 ~~~~~~~ipIiGvGGI~s~~Da~e~i~aG-As~VQv~Ta~~~~Gp~vi~~i~~~L~ 318 (385)
T PLN02495 264 KSEFPEDRSLSGIGGVETGGDAAEFILLG-ADTVQVCTGVMMHGYPLVKNLCAELQ 318 (385)
T ss_pred hhhccCCCcEEEECCCCCHHHHHHHHHhC-CCceeEeeeeeecCcHHHHHHHHHHH
Confidence 4899999999 899999999999 9999999999999 999999988753
No 44
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.52 E-value=8e-13 Score=128.73 Aligned_cols=157 Identities=22% Similarity=0.203 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 015862 180 QIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPF 259 (399)
Q Consensus 180 ~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~ 259 (399)
+..++|++.|+++. +|+|++|||..| | |.. .+..+.+......++++.+|+.+. -||.|||+++
T Consensus 109 ~~~~d~~~~a~~~~-~~ad~lElN~Sc---------P--n~~---~~~~~~~~~~~~~~i~~~v~~~~~-~Pv~vKL~p~ 172 (295)
T PF01180_consen 109 EEIEDWAELAKRLE-AGADALELNLSC---------P--NVP---GGRPFGQDPELVAEIVRAVREAVD-IPVFVKLSPN 172 (295)
T ss_dssp GHHHHHHHHHHHHH-HHCSEEEEESTS---------T--TST---TSGGGGGHHHHHHHHHHHHHHHHS-SEEEEEE-ST
T ss_pred hhHHHHHHHHHHhc-CcCCceEEEeec---------c--CCC---CccccccCHHHHHHHHHHHHhccC-CCEEEEecCC
Confidence 45678999998887 999999999888 4 333 233455566777889999998873 3899999983
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc---------cc--------ccCC----CchhhHHHHhhcC-
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT---------RE--------EKSE----CPHSLLPMRKAFK- 317 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~---------~~--------~~~~----~~~~~~~ir~~~~- 317 (399)
- . ... ...++..+.+.|++.|.+....... +. ..++ .+.+++.+++.++
T Consensus 173 ~-------~-~~~-~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~ 243 (295)
T PF01180_consen 173 F-------T-DIE-PFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ 243 (295)
T ss_dssp S-------S-CHH-HHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT
T ss_pred C-------C-chH-HHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc
Confidence 1 1 122 3455666668899988753321110 00 0111 1346677888988
Q ss_pred -CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH-hhCCcHHHHHHhC
Q 015862 318 -GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLF-LANPDLPRRFELN 362 (399)
Q Consensus 318 -~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~-iadPdl~~k~~~g 362 (399)
+||+++||+ |.+++.++|..| +|.|.++.++ ..+|+.+.++.++
T Consensus 244 ~i~Iig~GGI~s~~da~e~l~aG-A~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 244 DIPIIGVGGIHSGEDAIEFLMAG-ASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp SSEEEEESS--SHHHHHHHHHHT-ESEEEESHHHHHHGTTHHHHHHHH
T ss_pred ceEEEEeCCcCCHHHHHHHHHhC-CCHheechhhhhcCcHHHHHHHHH
Confidence 999999999 999999999999 9999999999 7799999999875
No 45
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.41 E-value=2.1e-11 Score=118.07 Aligned_cols=155 Identities=21% Similarity=0.174 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhC-CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAG-FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aG-fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
++|.+-+....++| +|+||||-.| | | ++. |-++..-...+.+++++|++.+. -||.|||+|+
T Consensus 109 ~~~~d~~~~~~~~~~ad~ielNiSc---------P--n--t~g-~~~l~~~~e~l~~l~~~vk~~~~-~Pv~vKl~P~-- 171 (310)
T COG0167 109 EAWADYARLLEEAGDADAIELNISC---------P--N--TPG-GRALGQDPELLEKLLEAVKAATK-VPVFVKLAPN-- 171 (310)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccC---------C--C--CCC-hhhhccCHHHHHHHHHHHHhccc-CceEEEeCCC--
Confidence 44666667777777 9999999887 4 3 333 55666567799999999999884 3899999983
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc----c-------------ccCC----CchhhHHHHhhcC--C
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR----E-------------EKSE----CPHSLLPMRKAFK--G 318 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~----~-------------~~~~----~~~~~~~ir~~~~--~ 318 (399)
.++..++|+.++++|+|.|.++....... . ..++ ....++.+++.++ +
T Consensus 172 ---------~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~i 242 (310)
T COG0167 172 ---------ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDI 242 (310)
T ss_pred ---------HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCC
Confidence 45678899999999999987765332111 0 0111 1245677888877 9
Q ss_pred cEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhCCC
Q 015862 319 TFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELNAP 364 (399)
Q Consensus 319 pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g~~ 364 (399)
|+|++||+ |.+||.+.|..| |++|.++.+++.+ |.++.++.+|..
T Consensus 243 pIIGvGGI~s~~DA~E~i~aG-A~~vQv~Tal~~~Gp~i~~~I~~~l~ 289 (310)
T COG0167 243 PIIGVGGIETGEDALEFILAG-ASAVQVGTALIYKGPGIVKEIIKGLA 289 (310)
T ss_pred cEEEecCcCcHHHHHHHHHcC-CchheeeeeeeeeCchHHHHHHHHHH
Confidence 99999999 899999999999 9999999999999 999999998754
No 46
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.40 E-value=3.3e-12 Score=126.79 Aligned_cols=245 Identities=18% Similarity=0.150 Sum_probs=169.0
Q ss_pred CCCccccCCeeeCCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC--CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhh
Q 015862 32 FLTPYKMGNFNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT--KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAW 109 (399)
Q Consensus 32 Lf~P~~ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~--g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~ 109 (399)
-+.|-.-+.+-++.+.++||.++. ...| |+++.+ |+.+...|+....+-=. ++..-| .-+
T Consensus 252 ~l~p~eKk~lD~r~K~~LaPLTTv---GNLP-------FRRlCk~lGADvTcgEMA~~tpLlq---G~~sEW-----ALl 313 (614)
T KOG2333|consen 252 RLRPQEKKLLDFRDKKYLAPLTTV---GNLP-------FRRLCKKLGADVTCGEMAMATPLLQ---GTASEW-----ALL 313 (614)
T ss_pred ccChhcccccccccceeecccccc---CCcc-------HHHHHHHhCCccchhHHHHHHHHhc---ccchhh-----hhh
Confidence 345666667889999999999874 2233 555554 77777778765444311 111111 111
Q ss_pred HHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHH
Q 015862 110 KPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAA 189 (399)
Q Consensus 110 ~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA 189 (399)
| -|..--..+|||.-+ .|. ...+||
T Consensus 314 k-----RH~sEdiFGVQlag~--------------------------------------~pd------------t~~kaa 338 (614)
T KOG2333|consen 314 K-----RHQSEDIFGVQLAGS--------------------------------------KPD------------TAAKAA 338 (614)
T ss_pred h-----hcCcccceeeEeccC--------------------------------------ChH------------HHHHHH
Confidence 1 244444788998520 121 126666
Q ss_pred HHH-HHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCC
Q 015862 190 RNA-IEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDS 268 (399)
Q Consensus 190 ~~a-~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~ 268 (399)
... ..+-.|.|+||+||. .-=.=...-|.+|.||..-+..++++.....+.-||.|||+-. ..
T Consensus 339 q~i~e~~~VDFIDlN~GCP---------IDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG-~k------ 402 (614)
T KOG2333|consen 339 QVIAETCDVDFIDLNMGCP---------IDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTG-TK------ 402 (614)
T ss_pred HHHHhhcceeeeeccCCCC---------hheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecc-cc------
Confidence 544 447899999999993 2211112224469999999999999998888754788877641 11
Q ss_pred ChHHHHHHHHHhhh-hhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCC-CHHHHHHHHH-cCCCcEE
Q 015862 269 NPEALGLYMAESLN-KYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGY-DREDGNKAIA-EGRADLV 343 (399)
Q Consensus 269 ~~~~~~~~l~~~Le-~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~-~G~~D~V 343 (399)
+...-+..++..+. ++|++.+++|.++..+.|....+|+++..+.+.++ +|||++|.+ +.+|-.+-+. ...+|.|
T Consensus 403 eg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~sv 482 (614)
T KOG2333|consen 403 EGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSV 482 (614)
T ss_pred cCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceE
Confidence 11122456777776 99999999999988888888889999988877653 799999999 9999554444 5559999
Q ss_pred EechHHhhCCcHHHHHHhCCCC
Q 015862 344 VYGRLFLANPDLPRRFELNAPL 365 (399)
Q Consensus 344 ~~gR~~iadPdl~~k~~~g~~~ 365 (399)
|+||+++--||++..|++.+-.
T Consensus 483 MIaRGALIKPWIFtEIkeqq~w 504 (614)
T KOG2333|consen 483 MIARGALIKPWIFTEIKEQQHW 504 (614)
T ss_pred EeeccccccchHhhhhhhhhcC
Confidence 9999999999999999998764
No 47
>PLN02826 dihydroorotate dehydrogenase
Probab=99.38 E-value=5.2e-11 Score=120.24 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHh--------CCC
Q 015862 179 PQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEI--------GAD 250 (399)
Q Consensus 179 ~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~v--------g~~ 250 (399)
++.+++|++.++.+.. .+|.+|||-.| | |.-.. ..+.+ ...+.+++++|+++. ..-
T Consensus 200 ~~~~~Dy~~~~~~~~~-~aDylelNiSc---------P--Ntpgl---r~lq~-~~~l~~ll~~V~~~~~~~~~~~~~~~ 263 (409)
T PLN02826 200 EDAAADYVQGVRALSQ-YADYLVINVSS---------P--NTPGL---RKLQG-RKQLKDLLKKVLAARDEMQWGEEGPP 263 (409)
T ss_pred cccHHHHHHHHHHHhh-hCCEEEEECCC---------C--CCCCc---ccccC-hHHHHHHHHHHHHHHHHhhhccccCC
Confidence 4557889999988865 59999999888 4 33111 12222 345677888777553 123
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--------------ccCC----CchhhHHH
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--------------EKSE----CPHSLLPM 312 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--------------~~~~----~~~~~~~i 312 (399)
||.||++++ .+.++..++++.+.+.|+|-|.++......+. ...+ ....+..+
T Consensus 264 Pv~vKlaPd---------l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l 334 (409)
T PLN02826 264 PLLVKIAPD---------LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREM 334 (409)
T ss_pred ceEEecCCC---------CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHH
Confidence 899999983 23456778899899999999877654321100 1111 13456678
Q ss_pred Hhhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhCC
Q 015862 313 RKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELNA 363 (399)
Q Consensus 313 r~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g~ 363 (399)
++.+ ++|||++||+ |.++|.+.|..| +++|.++++++.+ |.++.++.++.
T Consensus 335 ~~~~~~~ipIIgvGGI~sg~Da~e~i~AG-As~VQv~Ta~~~~Gp~~i~~I~~eL 388 (409)
T PLN02826 335 YRLTRGKIPLVGCGGVSSGEDAYKKIRAG-ASLVQLYTAFAYEGPALIPRIKAEL 388 (409)
T ss_pred HHHhCCCCcEEEECCCCCHHHHHHHHHhC-CCeeeecHHHHhcCHHHHHHHHHHH
Confidence 8877 6899999999 999999999999 9999999999985 99999998864
No 48
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=99.35 E-value=1.3e-11 Score=123.37 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCc
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFA 260 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~ 260 (399)
.++++++|++++++||++|+|+.++++++. ||.++..++|++||+++|++ .|.++.+.
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------~~~~~d~~~v~~ir~~~g~~~~l~vDaN~-- 198 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------EDLREDLARVRAVREAVGPDVDLMVDANG-- 198 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------HHHHHHHHHHHHHHHhhCCCCEEEEECCC--
Confidence 456889999999999999999999976655 89999999999999999987 58887764
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCC
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
..+.++++++++.|++.+++|++ +|. .....+..+.+|+.+++||++.+.+ +++++.++++.+.
T Consensus 199 -------~~~~~~a~~~~~~l~~~~i~~iE--qP~------~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~ 263 (357)
T cd03316 199 -------RWDLAEAIRLARALEEYDLFWFE--EPV------PPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA 263 (357)
T ss_pred -------CCCHHHHHHHHHHhCccCCCeEc--CCC------CccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC
Confidence 23578899999999999999987 442 1124567788999999999999998 9999999999999
Q ss_pred CcEEEe
Q 015862 340 ADLVVY 345 (399)
Q Consensus 340 ~D~V~~ 345 (399)
+|+|.+
T Consensus 264 ~d~v~~ 269 (357)
T cd03316 264 VDIIQP 269 (357)
T ss_pred CCEEec
Confidence 999865
No 49
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.31 E-value=9.9e-11 Score=114.29 Aligned_cols=129 Identities=19% Similarity=0.115 Sum_probs=96.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++++.+.|+|+|+||.+| |....| +..++++++|++++ .||.+|...
T Consensus 132 ~~~i~~~~~~g~~~i~l~~~~---------p~~~~~-------------~~~~~i~~l~~~~~-~pvivK~v~------- 181 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTVDT---------PVLGRR-------------LTWDDLAWLRSQWK-GPLILKGIL------- 181 (299)
T ss_pred HHHHHHHHHcCCCEEEEecCC---------CCCCCC-------------CCHHHHHHHHHhcC-CCEEEeecC-------
Confidence 455677788999999999998 322122 34688999999885 378888432
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
+ .+.++.+++.|+|+|.++...-...+...+.+..+..+++.++ +|||++||+ +..++.++|.-| ||+
T Consensus 182 ----s----~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG-Ad~ 252 (299)
T cd02809 182 ----T----PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG-ADA 252 (299)
T ss_pred ----C----HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC-CCE
Confidence 1 2347778899999999865322222233455667888888874 999999999 999999999988 999
Q ss_pred EEechHHhhCC
Q 015862 343 VVYGRLFLANP 353 (399)
Q Consensus 343 V~~gR~~iadP 353 (399)
|++||+++...
T Consensus 253 V~ig~~~l~~~ 263 (299)
T cd02809 253 VLIGRPFLYGL 263 (299)
T ss_pred EEEcHHHHHHH
Confidence 99999988653
No 50
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.27 E-value=2.4e-10 Score=113.20 Aligned_cols=141 Identities=21% Similarity=0.168 Sum_probs=97.4
Q ss_pred hCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHH
Q 015862 195 AGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALG 274 (399)
Q Consensus 195 aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~ 274 (399)
.+.|+++||..+. +.-.+|. .+ .++ +-.+|.|++||+.++ -||.||...+ .. .
T Consensus 140 i~adal~i~ln~~---q~~~~p~------g~-~~f----~~~le~i~~i~~~~~-vPVivK~~g~--------g~----~ 192 (333)
T TIGR02151 140 IEADALAIHLNVL---QELVQPE------GD-RNF----KGWLEKIAEICSQLS-VPVIVKEVGF--------GI----S 192 (333)
T ss_pred hcCCCEEEcCccc---ccccCCC------CC-cCH----HHHHHHHHHHHHhcC-CCEEEEecCC--------CC----C
Confidence 4689999998552 1222221 11 122 336799999999984 3899998752 11 3
Q ss_pred HHHHHhhhhhCceEEEEeCCCccc---cc----cc----C--CCc-----hhhHHHHh-hcCCcEEEeCCC-CHHHHHHH
Q 015862 275 LYMAESLNKYGILYCHMVEPRMKT---RE----EK----S--ECP-----HSLLPMRK-AFKGTFLVAGGY-DREDGNKA 334 (399)
Q Consensus 275 ~~l~~~Le~~Gvd~l~v~~~~~~~---~~----~~----~--~~~-----~~~~~ir~-~~~~pvi~~Ggi-t~~~a~~~ 334 (399)
.+.++.|++.|+|+|+++...-.. .. .. . ..+ ..+..+++ .+++||+++||+ ++.++.++
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~ka 272 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKA 272 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHH
Confidence 567889999999999997642110 00 00 0 011 23344555 467999999999 99999999
Q ss_pred HHcCCCcEEEechHHh-----hCCcHHHHHHhCC
Q 015862 335 IAEGRADLVVYGRLFL-----ANPDLPRRFELNA 363 (399)
Q Consensus 335 L~~G~~D~V~~gR~~i-----adPdl~~k~~~g~ 363 (399)
|..| ||+|++||+++ .+|+++.++.+..
T Consensus 273 LalG-Ad~V~igr~~L~~~~~~g~~~v~~~i~~~ 305 (333)
T TIGR02151 273 IALG-ADAVGMARPFLKAALDEGEEAVIEEIELI 305 (333)
T ss_pred HHhC-CCeehhhHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999 99999999999 7899888877653
No 51
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.94 E-value=8.1e-08 Score=94.90 Aligned_cols=132 Identities=23% Similarity=0.234 Sum_probs=88.1
Q ss_pred HHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHH
Q 015862 193 IEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEA 272 (399)
Q Consensus 193 ~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 272 (399)
..++.|+++||..+. +...+|. |.. ..+-.++.|++|++.+. -||.+|.+.. ..+
T Consensus 137 ~~~~adalel~l~~~---q~~~~~~--------~~~---df~~~~~~i~~l~~~~~-vPVivK~~g~--------g~s-- 191 (326)
T cd02811 137 EMIEADALAIHLNPL---QEAVQPE--------GDR---DFRGWLERIEELVKALS-VPVIVKEVGF--------GIS-- 191 (326)
T ss_pred HhcCCCcEEEeCcch---HhhcCCC--------CCc---CHHHHHHHHHHHHHhcC-CCEEEEecCC--------CCC--
Confidence 335799999996431 2222222 110 12346788899998873 3899999763 122
Q ss_pred HHHHHHHhhhhhCceEEEEeCCC--cc-------ccccc----C-------CCchhhHHHHhhc-CCcEEEeCCC-CHHH
Q 015862 273 LGLYMAESLNKYGILYCHMVEPR--MK-------TREEK----S-------ECPHSLLPMRKAF-KGTFLVAGGY-DRED 330 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~--~~-------~~~~~----~-------~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~ 330 (399)
.+.++.|++.|+|+|.++... .+ ..... . +....+..+++.+ ++|||++||+ +..+
T Consensus 192 --~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~d 269 (326)
T cd02811 192 --RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLD 269 (326)
T ss_pred --HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 456788899999999997521 00 00000 0 0112445566677 7999999999 9999
Q ss_pred HHHHHHcCCCcEEEechHHhhC
Q 015862 331 GNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 331 a~~~L~~G~~D~V~~gR~~iad 352 (399)
+.++|..| ||+|++||+++.-
T Consensus 270 v~kal~lG-Ad~V~i~~~~L~~ 290 (326)
T cd02811 270 IAKALALG-ADLVGMAGPFLKA 290 (326)
T ss_pred HHHHHHhC-CCEEEEcHHHHHH
Confidence 99999999 9999999998753
No 52
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.92 E-value=3.3e-08 Score=98.64 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
++||+++++.+++.+ ...++.+++++||++. -.+.+|+++
T Consensus 102 a~aa~~~~e~~~~~~-------------------------------~p~l~~~ii~~vr~a~--VtvkiRl~~------- 141 (369)
T TIGR01304 102 AAATRLLQELHAAPL-------------------------------KPELLGERIAEVRDSG--VITAVRVSP------- 141 (369)
T ss_pred HHHHHHHHHcCCCcc-------------------------------ChHHHHHHHHHHHhcc--eEEEEecCC-------
Confidence 678899998888762 2468899999999974 235555543
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc-ccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE-EKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
..+.++++.++++|+|+|.+|.+...+.+ .....+..+.++++.+++|||+ |++ |.+++.++++.| ||.|
T Consensus 142 ------~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aG-aDgV 213 (369)
T TIGR01304 142 ------QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTG-AAGV 213 (369)
T ss_pred ------cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEE
Confidence 13567899999999999999877654433 2222345566777788999997 666 999999999987 9999
Q ss_pred EechHH
Q 015862 344 VYGRLF 349 (399)
Q Consensus 344 ~~gR~~ 349 (399)
++||+.
T Consensus 214 ~~G~gg 219 (369)
T TIGR01304 214 IVGPGG 219 (369)
T ss_pred EECCCC
Confidence 988755
No 53
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.81 E-value=4.6e-07 Score=89.50 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
+.+.+..+.++|+|.|+|+.+|| .+ ....++|+++|+..+.-+|.+ .-
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G-------------------~~-----~~~~~~i~~ik~~~p~v~Vi~--G~------ 142 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG-------------------HS-----VYVIEMIKFIKKKYPNVDVIA--GN------ 142 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC-------------------Cc-----HHHHHHHHHHHHHCCCceEEE--CC------
Confidence 45566777889999999998774 11 346889999999864213333 11
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCC--C-ccc---ccccCCCchhhHHHHhh---cCCcEEEeCCC-CHHHHHHH
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEP--R-MKT---REEKSECPHSLLPMRKA---FKGTFLVAGGY-DREDGNKA 334 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~--~-~~~---~~~~~~~~~~~~~ir~~---~~~pvi~~Ggi-t~~~a~~~ 334 (399)
-. ..+.++.+.++|+|+|.++.+ . +.. .....+.+..+..+.++ .++|||+.||+ ++.++.++
T Consensus 143 ---v~----t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kA 215 (325)
T cd00381 143 ---VV----TAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKA 215 (325)
T ss_pred ---CC----CHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Confidence 11 234566777899999987422 1 111 11223344444445444 46999999999 89999999
Q ss_pred HHcCCCcEEEechHHhhCCcHHHH
Q 015862 335 IAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 335 L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
|+.| +|.|++||.|+.-.+-+-.
T Consensus 216 la~G-A~~VmiGt~fa~t~Es~g~ 238 (325)
T cd00381 216 LAAG-ADAVMLGSLLAGTDESPGE 238 (325)
T ss_pred HHcC-CCEEEecchhcccccCCCc
Confidence 9998 9999999999997766533
No 54
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.80 E-value=1.2e-07 Score=94.68 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=90.5
Q ss_pred HHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHH
Q 015862 193 IEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEA 272 (399)
Q Consensus 193 ~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 272 (399)
...+.|+++||..++ +.-.+|. |.- ..+-+++.|++||+.++ -||.+|.+.+ ..+
T Consensus 145 ~~~~adal~l~l~~~---qe~~~p~---------g~~--~f~~~le~i~~i~~~~~-vPVivK~~g~--------g~s-- 199 (352)
T PRK05437 145 EMIEADALQIHLNPL---QELVQPE---------GDR--DFRGWLDNIAEIVSALP-VPVIVKEVGF--------GIS-- 199 (352)
T ss_pred HhcCCCcEEEeCccc---hhhcCCC---------Ccc--cHHHHHHHHHHHHHhhC-CCEEEEeCCC--------CCc--
Confidence 335789999997542 2222332 110 12346799999999984 4899999752 122
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcc---c----cc------c-----cCCCchhhHHHHhh-cCCcEEEeCCC-CHHHHH
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMK---T----RE------E-----KSECPHSLLPMRKA-FKGTFLVAGGY-DREDGN 332 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~---~----~~------~-----~~~~~~~~~~ir~~-~~~pvi~~Ggi-t~~~a~ 332 (399)
.+.++.|++.|+|+|.++...-. . .. . ..+....+..+++. .++||+++||+ +..++.
T Consensus 200 --~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 200 --KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIA 277 (352)
T ss_pred --HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence 45788889999999999653100 0 00 0 00111245557777 48999999999 999999
Q ss_pred HHHHcCCCcEEEechHHhhC
Q 015862 333 KAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 333 ~~L~~G~~D~V~~gR~~iad 352 (399)
++|..| ||+|++||+++..
T Consensus 278 k~l~~G-Ad~v~ig~~~l~~ 296 (352)
T PRK05437 278 KALALG-ADAVGMAGPFLKA 296 (352)
T ss_pred HHHHcC-CCEEEEhHHHHHH
Confidence 999999 9999999999876
No 55
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.79 E-value=7.2e-07 Score=83.79 Aligned_cols=122 Identities=22% Similarity=0.153 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+-+..++++|+|+|.|+... ..++++++++. + -++.+.+.
T Consensus 70 ~~~~~~~~~~g~d~v~l~~~~-----------------------------~~~~~~~~~~~-~-i~~i~~v~-------- 110 (236)
T cd04730 70 EALLEVALEEGVPVVSFSFGP-----------------------------PAEVVERLKAA-G-IKVIPTVT-------- 110 (236)
T ss_pred HHHHHHHHhCCCCEEEEcCCC-----------------------------CHHHHHHHHHc-C-CEEEEeCC--------
Confidence 455567788999999987541 02445555542 1 13444322
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc--CCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK--SECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
+. +.++.+.+.|+|++.++.......... ...+..++++++.+++||++.||+ +++++.++++.| +|+
T Consensus 111 ----~~----~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G-adg 181 (236)
T cd04730 111 ----SV----EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALG-ADG 181 (236)
T ss_pred ----CH----HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CcE
Confidence 11 234556678999998754321111111 123457888888899999999999 689999999987 999
Q ss_pred EEechHHhhCCcH
Q 015862 343 VVYGRLFLANPDL 355 (399)
Q Consensus 343 V~~gR~~iadPdl 355 (399)
|++|++++..++.
T Consensus 182 V~vgS~l~~~~e~ 194 (236)
T cd04730 182 VQMGTRFLATEES 194 (236)
T ss_pred EEEchhhhcCccc
Confidence 9999999998866
No 56
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.78 E-value=1.5e-07 Score=92.61 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++++.++.+++.||++|+|+.+. .+ +...++|++||+++| + .|.++.+.
T Consensus 136 ~~~~~~~~~~~~~Gf~~iKik~g~---------------------~~----~~d~~~v~~lr~~~g-~~~l~vD~n~--- 186 (316)
T cd03319 136 EAMAAAAKKAAKRGFPLLKIKLGG---------------------DL----EDDIERIRAIREAAP-DARLRVDANQ--- 186 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC---------------------Ch----hhHHHHHHHHHHhCC-CCeEEEeCCC---
Confidence 456778888888999999999753 11 234799999999999 6 56666654
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.+++.++++.|++.+++|++ +|. . ...++..+++++.+++||++++.+ +++++.++++.+.+
T Consensus 187 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~-----~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~ 252 (316)
T cd03319 187 ------GWTPEEAVELLRELAELGVELIE--QPV-----P-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY 252 (316)
T ss_pred ------CcCHHHHHHHHHHHHhcCCCEEE--CCC-----C-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC
Confidence 23457899999999999999987 442 1 234567788999999999999998 89999999999999
Q ss_pred cEEEec
Q 015862 341 DLVVYG 346 (399)
Q Consensus 341 D~V~~g 346 (399)
|+|.+-
T Consensus 253 d~v~~~ 258 (316)
T cd03319 253 DGINIK 258 (316)
T ss_pred CEEEEe
Confidence 998663
No 57
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.77 E-value=2.1e-07 Score=89.29 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++++.|+.+++.||..++|+.+.. .+--.++|++||+++|++ .|.+..+.
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKvg~~-------------------------~~~d~~~v~~vr~~~g~~~~l~vDan~--- 138 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKVGRD-------------------------PARDVAVVAALREAVGDDAELRVDANR--- 138 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCC-------------------------HHHHHHHHHHHHHhcCCCCEEEEeCCC---
Confidence 3456777888899999999986420 133478999999999875 35444432
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.++++++++.|++.+++|++ +|. .....+..+.+++.+++||++.+.+ +++++.++++.+.+
T Consensus 139 ------~~~~~~a~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~ 204 (265)
T cd03315 139 ------GWTPKQAIRALRALEDLGLDYVE--QPL------PADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA 204 (265)
T ss_pred ------CcCHHHHHHHHHHHHhcCCCEEE--CCC------CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC
Confidence 23578899999999999999988 442 1224567788999999999999998 89999999999999
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|+|.+
T Consensus 205 d~v~~ 209 (265)
T cd03315 205 DAVNI 209 (265)
T ss_pred CEEEE
Confidence 99877
No 58
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.74 E-value=2.2e-07 Score=87.82 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=97.4
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc--eEEEecCCcccCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR--VGIRLSPFANYME 264 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~--v~vrls~~~~~~~ 264 (399)
+.++.+.++|+|+|-|.... ..+ .+.+.++++.+|.+. +++.+....-..
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~-----------------------~~~----~~~~~~i~~~~g~~~i~~sid~~~~~v~~- 140 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAA-----------------------VEN----PEIVRELSEEFGSERVMVSLDAKDGEVVI- 140 (241)
T ss_pred HHHHHHHHcCCCEEEEChHH-----------------------hhC----hHHHHHHHHHhCCCcEEEEEEeeCCEEEE-
Confidence 44466677999998763221 111 245667777777653 344332110000
Q ss_pred CCCCC-hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 265 SGDSN-PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 265 ~~~~~-~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
.++.. +..+..++++.+++.|++.++++........ ....++.++.+++.+++||+++||+ |++++.++++.| +|.
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G-a~g 218 (241)
T PRK13585 141 KGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAG-AAG 218 (241)
T ss_pred CCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCE
Confidence 01111 1113567888899999999988754322111 2346678899999999999999999 799999987777 999
Q ss_pred EEechHHhhCCcHHHHHHh
Q 015862 343 VVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 343 V~~gR~~iadPdl~~k~~~ 361 (399)
|++|++++.+|..+.+++.
T Consensus 219 v~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 219 VVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred EEEEHHHhcCCcCHHHHHH
Confidence 9999999999998887654
No 59
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.73 E-value=1.8e-07 Score=93.99 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++++.|+++++.||++++|+.+.+. . .+...+.+++||+++|++ .|.+..|.
T Consensus 145 ~~~~~~a~~~~~~Gf~~~Kik~~~~~-------------------~----~~~di~~i~~vR~~~G~~~~l~vDan~--- 198 (368)
T cd03329 145 EAYADFAEECKALGYRAIKLHPWGPG-------------------V----VRRDLKACLAVREAVGPDMRLMHDGAH--- 198 (368)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCch-------------------h----HHHHHHHHHHHHHHhCCCCeEEEECCC---
Confidence 45788888999999999999743210 0 234689999999999987 57776664
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-C-HHHHHHHHHcCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-D-REDGNKAIAEGR 339 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t-~~~a~~~L~~G~ 339 (399)
..+.++++++++.|++.++.|++ +|. ........+.+++.+++||++...+ + ++++.++++.+.
T Consensus 199 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a 264 (368)
T cd03329 199 ------WYSRADALRLGRALEELGFFWYE--DPL------REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGA 264 (368)
T ss_pred ------CcCHHHHHHHHHHhhhcCCCeEe--CCC------CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCC
Confidence 33578899999999999999888 442 1123456678999999999887777 8 999999999999
Q ss_pred CcEEEe
Q 015862 340 ADLVVY 345 (399)
Q Consensus 340 ~D~V~~ 345 (399)
+|+|-+
T Consensus 265 ~d~v~~ 270 (368)
T cd03329 265 TDFLRA 270 (368)
T ss_pred CCEEec
Confidence 998854
No 60
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.69 E-value=1.3e-07 Score=89.99 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=43.9
Q ss_pred CchhhHHHHhhcCCcEE--EeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHH
Q 015862 305 CPHSLLPMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPR 357 (399)
Q Consensus 305 ~~~~~~~ir~~~~~pvi--~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~ 357 (399)
.++.++.+++..++||+ +.||| ||+++..+++.| ||.|++|++++..++...
T Consensus 191 ~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G-AdgVaVGSaI~ks~dP~~ 245 (293)
T PRK04180 191 PYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG-ADGVFVGSGIFKSGDPEK 245 (293)
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC-CCEEEEcHHhhcCCCHHH
Confidence 34567788888899997 99999 999999999998 999999999996555433
No 61
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.68 E-value=3.9e-07 Score=85.54 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=67.4
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.+.++......... .+.++.++.+++.+++||+++||+ +++++.++++.| +|.|++||+++.+
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~-g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~vg~~~~~~ 225 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLS-GPNFELYKELAAATGIPVIASGGVSSLDDIKALKELG-VAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccC-CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC-CCEEEEeHHHHcC
Confidence 4678899999999999887543332222 256788899999999999999999 899999999986 9999999999999
Q ss_pred CcHHHH
Q 015862 353 PDLPRR 358 (399)
Q Consensus 353 Pdl~~k 358 (399)
+-=+.+
T Consensus 226 ~~~~~~ 231 (234)
T cd04732 226 KITLEE 231 (234)
T ss_pred CCCHHH
Confidence 844443
No 62
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.68 E-value=3e-07 Score=87.08 Aligned_cols=147 Identities=10% Similarity=0.063 Sum_probs=101.2
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++++..+|+|-|-+. .++.+.+.++.++++++++.+ .+++.+... .....
T Consensus 87 ~edv~~~l~~Ga~kvviG-----------------------s~~l~~p~l~~~i~~~~~~~i---~vsld~~~~-~v~~~ 139 (241)
T PRK14024 87 DESLEAALATGCARVNIG-----------------------TAALENPEWCARVIAEHGDRV---AVGLDVRGH-TLAAR 139 (241)
T ss_pred HHHHHHHHHCCCCEEEEC-----------------------chHhCCHHHHHHHHHHhhhhE---EEEEEEecc-EeccC
Confidence 345566677899976533 344556778888888876543 233333110 00001
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHH--cCCCcE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIA--EGRADL 342 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~--~G~~D~ 342 (399)
+|.....+..++++.+++.|++.+-++..+....+.. +.++.++.+++.+++||+++|++ |++++.++++ ..+||.
T Consensus 140 Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G-~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~Gvdg 218 (241)
T PRK14024 140 GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG-PNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEG 218 (241)
T ss_pred CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccE
Confidence 2222234467899999999999998887665444443 47888999999999999999999 8999998864 234999
Q ss_pred EEechHHhhCCcHHHHHH
Q 015862 343 VVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 343 V~~gR~~iadPdl~~k~~ 360 (399)
|++||+++..+-=...++
T Consensus 219 V~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 219 AIVGKALYAGAFTLPEAL 236 (241)
T ss_pred EEEeHHHHcCCCCHHHHH
Confidence 999999999985555543
No 63
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.64 E-value=9.2e-07 Score=86.89 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=91.8
Q ss_pred HHHHHHHHHhCC--CEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCccc
Q 015862 186 RLAARNAIEAGF--DGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGf--DgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~ 262 (399)
.+-+....+||. |.|.|.++||+ ...+.|+|+.||+..+.-+|.+. +.
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh------------------------~~~~~e~I~~ir~~~p~~~vi~g~V~----- 149 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGH------------------------SDSVINMIQHIKKHLPETFVIAGNVG----- 149 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc------------------------hHHHHHHHHHHHhhCCCCeEEEEecC-----
Confidence 456666778865 99999999853 24568889999999864355442 22
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeC--CCc-cc---ccccCCCch--hhHHHHhhcCCcEEEeCCC-CHHHHHH
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVE--PRM-KT---REEKSECPH--SLLPMRKAFKGTFLVAGGY-DREDGNK 333 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~--~~~-~~---~~~~~~~~~--~~~~ir~~~~~pvi~~Ggi-t~~~a~~ 333 (399)
+ .+-++.|.++|+|++.++. ++. .. .....+.|. .+..+++++++|||+.||+ ++.++.+
T Consensus 150 -------t----~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~K 218 (326)
T PRK05458 150 -------T----PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAK 218 (326)
T ss_pred -------C----HHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 2 2345677789999987653 221 11 111233334 4777888889999999999 9999999
Q ss_pred HHHcCCCcEEEechHHhhCCcH
Q 015862 334 AIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 334 ~L~~G~~D~V~~gR~~iadPdl 355 (399)
+|+.| +|.|++|+++..-.+-
T Consensus 219 aLa~G-A~aV~vG~~~~~~~es 239 (326)
T PRK05458 219 SIRFG-ATMVMIGSLFAGHEES 239 (326)
T ss_pred HHHhC-CCEEEechhhcCCccC
Confidence 99998 9999999999854433
No 64
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.63 E-value=9.4e-07 Score=83.63 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
..+..++++.+++.|+|++.++....... ....++++++.+++.+++||+++|++ ++++++++++.+.||.|++||++
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~-~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGT-KKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCC-CCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 34467889999999999999876432211 22346778899999999999999999 89999999998669999999999
Q ss_pred hhCC
Q 015862 350 LANP 353 (399)
Q Consensus 350 iadP 353 (399)
...-
T Consensus 227 ~~~~ 230 (243)
T cd04731 227 HFGE 230 (243)
T ss_pred HcCC
Confidence 8753
No 65
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.59 E-value=7.7e-07 Score=83.05 Aligned_cols=134 Identities=18% Similarity=0.151 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 266 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~ 266 (399)
+.++.|+++|+|.|-+-....+ +| + | ..+.++++.+|+. ..-++.+.++
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~------~p------~--~-------~~~~~~i~~~~~~-~~i~vi~~v~--------- 127 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP------RP------D--G-------ETLAELVKRIKEY-PGQLLMADCS--------- 127 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC------CC------C--C-------CCHHHHHHHHHhC-CCCeEEEeCC---------
Confidence 4467889999999987654410 00 0 0 2347889999886 2225555433
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccc--cccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTR--EEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~--~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
+.++ ++.+.+.|+|++.+........ .........++.+++.+++||++.||+ |+++++++++.| +|+|
T Consensus 128 ---t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G-adgV 199 (221)
T PRK01130 128 ---TLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELG-AHAV 199 (221)
T ss_pred ---CHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC-CCEE
Confidence 2233 3567788999997642222111 112234567888999999999999999 899999999998 9999
Q ss_pred EechHHhhCCcHHHHHH
Q 015862 344 VYGRLFLANPDLPRRFE 360 (399)
Q Consensus 344 ~~gR~~iadPdl~~k~~ 360 (399)
++|+.++ +|+++.+..
T Consensus 200 ~iGsai~-~~~~~~~~~ 215 (221)
T PRK01130 200 VVGGAIT-RPEEITKWF 215 (221)
T ss_pred EEchHhc-CCHHHHHHH
Confidence 9999864 677766643
No 66
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.59 E-value=2.1e-06 Score=85.90 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC-CchhhHH
Q 015862 233 CRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE-CPHSLLP 311 (399)
Q Consensus 233 ~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~-~~~~~~~ 311 (399)
..++.++|+++|++ + -.+.+|+++ .+..++++.|.++|+|+|.+|.++..+.+.... ++..+..
T Consensus 117 p~l~~~iv~~~~~~-~-V~v~vr~~~-------------~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~ 181 (368)
T PRK08649 117 PELITERIAEIRDA-G-VIVAVSLSP-------------QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKE 181 (368)
T ss_pred HHHHHHHHHHHHhC-e-EEEEEecCC-------------cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHH
Confidence 46789999999995 2 245666643 125678999999999999998776544443332 3455555
Q ss_pred HHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH
Q 015862 312 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 312 ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
+++.+++|||+ |++ |+++|+++++.| ||.|++||+-
T Consensus 182 ~ik~~~ipVIa-G~V~t~e~A~~l~~aG-AD~V~VG~G~ 218 (368)
T PRK08649 182 FIYELDVPVIV-GGCVTYTTALHLMRTG-AAGVLVGIGP 218 (368)
T ss_pred HHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence 66667999988 667 999999999987 9999999774
No 67
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.55 E-value=8.6e-07 Score=83.21 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=64.0
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.+-++.......... ++++.++.+++.+++||+++||+ |+++++++++.|.||.|++||+++..
T Consensus 148 ~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 148 AEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 45688899999999777665433333233 56788899999999999999999 99999999999889999999999764
No 68
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.54 E-value=3.1e-07 Score=86.92 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=74.8
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+..++++.+++.|++.++++...... .....+.+.++.+++.+++||+++||+ +.++++++++.| ||.|++||+++.
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~-~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~~~ 105 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASS-EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAAVE 105 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccc-ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchhhh
Confidence 45679999999999998887654321 233456788999999999999999999 899999999988 999999999999
Q ss_pred CCcHHHHHHhC
Q 015862 352 NPDLPRRFELN 362 (399)
Q Consensus 352 dPdl~~k~~~g 362 (399)
||+++.++.+.
T Consensus 106 ~p~~~~~i~~~ 116 (243)
T cd04731 106 NPELIREIAKR 116 (243)
T ss_pred ChHHHHHHHHH
Confidence 99999998774
No 69
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.54 E-value=1.4e-06 Score=81.91 Aligned_cols=76 Identities=16% Similarity=0.042 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
+..++++.+++.|+|++.++....... ...++++.++.+++.+++||+++||+ +++++++++.+..||.|++|++|
T Consensus 154 ~~~~~~~~~~~~G~d~i~i~~i~~~g~-~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 154 DPVEWAREAEQLGAGEILLNSIDRDGT-MKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCccCC-cCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 357789999999999999886432221 22346788999999999999999999 89999996666569999999986
No 70
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.48 E-value=6.4e-07 Score=84.07 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=75.0
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+..++++.+++.|+|.+|++.-... ......+.+.++.+++.+++||+++|++ ++++++++++.| ||.|++|+.++.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~l~ 107 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAAVK 107 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchHHh
Confidence 3567899999999999999854321 1123456788999999999999999999 899999999998 999999999999
Q ss_pred CCcHHHHHHhCC
Q 015862 352 NPDLPRRFELNA 363 (399)
Q Consensus 352 dPdl~~k~~~g~ 363 (399)
||+++.++.+.-
T Consensus 108 dp~~~~~i~~~~ 119 (234)
T cd04732 108 NPELVKELLKEY 119 (234)
T ss_pred ChHHHHHHHHHc
Confidence 999999988753
No 71
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.48 E-value=3.4e-06 Score=83.93 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++++.|+.+++.||..++|+.+.| + ...+ ...+.-.+.|++||+++|++ .|.+..+.
T Consensus 122 ~~~~~~a~~~~~~Gf~~~Kikvg~~--------~-~~~~---------~~~~~d~~~v~avr~~~g~~~~l~vDan~--- 180 (341)
T cd03327 122 DELPDEAKEYLKEGYRGMKMRFGYG--------P-SDGH---------AGLRKNVELVRAIREAVGYDVDLMLDCYM--- 180 (341)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC--------C-Ccch---------HHHHHHHHHHHHHHHHhCCCCcEEEECCC---
Confidence 3456777788889999999997653 1 0000 11345689999999999986 46665553
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.++++++++.|+++++.|++ +|. .....+..+.+++.+++||++...+ ++.++.++++.+.+
T Consensus 181 ------~~~~~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~ 246 (341)
T cd03327 181 ------SWNLNYAIKMARALEKYELRWIE--EPL------IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAV 246 (341)
T ss_pred ------CCCHHHHHHHHHHhhhcCCcccc--CCC------CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCC
Confidence 23567899999999999998887 542 1234566778999999999888887 89999999999999
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|+|.+
T Consensus 247 d~i~~ 251 (341)
T cd03327 247 DILQP 251 (341)
T ss_pred CEEec
Confidence 98864
No 72
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.47 E-value=2.1e-06 Score=85.80 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCccc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANY 262 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~ 262 (399)
++++.|+.+++.||+.++|+.+.. .+--.+.|++||+++|++ .|.|..|.
T Consensus 141 ~~~~~a~~~~~~Gf~~~Kikvg~~-------------------------~~~d~~~v~~vRe~~G~~~~l~vDaN~---- 191 (352)
T cd03328 141 RLREQLSGWVAQGIPRVKMKIGRD-------------------------PRRDPDRVAAARRAIGPDAELFVDANG---- 191 (352)
T ss_pred HHHHHHHHHHHCCCCEEEeecCCC-------------------------HHHHHHHHHHHHHHcCCCCeEEEECCC----
Confidence 456667777789999999985421 133488999999999986 46666554
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh--cCCcEEEeCCC-CHHHHHHHHHcCC
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA--FKGTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~--~~~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
..+.++++++++.|+++++.|++ +|. .+...+..+.+++. +++||++...+ +..++.++++.+.
T Consensus 192 -----~~~~~~A~~~~~~l~~~~~~~~E--eP~------~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a 258 (352)
T cd03328 192 -----AYSRKQALALARAFADEGVTWFE--EPV------SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHA 258 (352)
T ss_pred -----CCCHHHHHHHHHHHHHhCcchhh--CCC------ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCC
Confidence 33578899999999999998887 442 12245677889999 88999988887 9999999999999
Q ss_pred CcEEEe
Q 015862 340 ADLVVY 345 (399)
Q Consensus 340 ~D~V~~ 345 (399)
+|+|-+
T Consensus 259 ~div~~ 264 (352)
T cd03328 259 VDVLQA 264 (352)
T ss_pred CCEEec
Confidence 998854
No 73
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.46 E-value=7e-06 Score=74.36 Aligned_cols=133 Identities=19% Similarity=0.108 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
++..+.|+.|+++|+|+|.+....+|..++ +.+.+.+.+++|+++++.+ ++.+...+..
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~- 124 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSLKEG-------------------DWEEVLEEIAAVVEAADGGLPLKVILETRG- 124 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHHhCC-------------------CHHHHHHHHHHHHHHhcCCceEEEEEECCC-
Confidence 456888899999999999998776544332 3567889999999887223 7888777631
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEEEeCCC-CHHHHHHHHHcC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGY-DREDGNKAIAEG 338 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G 338 (399)
..+.++..++++.+++.|++++..+.+... .......++.+++.+ +.|+++.|++ +++.+..++..|
T Consensus 125 ------~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~----~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~G 194 (201)
T cd00945 125 ------LKTADEIAKAARIAAEAGADFIKTSTGFGG----GGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAG 194 (201)
T ss_pred ------CCCHHHHHHHHHHHHHhCCCEEEeCCCCCC----CCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhc
Confidence 124566677777788889999987644221 122456677788887 5689999999 699999999998
Q ss_pred CCcEEEec
Q 015862 339 RADLVVYG 346 (399)
Q Consensus 339 ~~D~V~~g 346 (399)
+|.+++|
T Consensus 195 -a~g~~~g 201 (201)
T cd00945 195 -ADGIGTS 201 (201)
T ss_pred -cceeecC
Confidence 9998875
No 74
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=98.45 E-value=2.7e-06 Score=85.56 Aligned_cols=122 Identities=24% Similarity=0.285 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+.++++++...+.||+.++|+.+.+.. ..-++.+++||+++|++ .|.|..|.
T Consensus 145 e~~~~~~~~~~~~G~~~~Klk~g~~~~------------------------~~d~~~v~avRe~~g~~~~l~iDan~--- 197 (372)
T COG4948 145 EMAAEAARALVELGFKALKLKVGVGDG------------------------DEDLERVRALREAVGDDVRLMVDANG--- 197 (372)
T ss_pred HHHHHHHHHHHhcCCceEEecCCCCch------------------------HHHHHHHHHHHHHhCCCceEEEeCCC---
Confidence 457888888888999999999887311 14589999999999975 57776664
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.++++.+++.|++.++.|++ +|. .+...+..+++++.+++||.+...+ +..++.++++.|.+
T Consensus 198 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~ 263 (372)
T COG4948 198 ------GWTLEEAIRLARALEEYGLEWIE--EPL------PPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAV 263 (372)
T ss_pred ------CcCHHHHHHHHHHhcccCcceEE--CCC------CccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCC
Confidence 33567789999999999999988 552 2235667888999888999988888 99999999999999
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|+|-+
T Consensus 264 div~~ 268 (372)
T COG4948 264 DIVQP 268 (372)
T ss_pred CeecC
Confidence 98865
No 75
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.45 E-value=7.7e-07 Score=84.85 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.++++....... ....+++.++.+++.+++||+++||+ |.++++++++.| ||.|++|+.++.|
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~-~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~G-a~~Viigt~~l~~ 109 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSE-GRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAG-ADKVSINSAAVAN 109 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccc-cCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcC-CCEEEEChhHhhC
Confidence 45688889999999999987654322 23457788999999999999999999 899999999987 9999999999999
Q ss_pred CcHHHHHHhCC
Q 015862 353 PDLPRRFELNA 363 (399)
Q Consensus 353 Pdl~~k~~~g~ 363 (399)
|++++++.+.-
T Consensus 110 p~~~~ei~~~~ 120 (253)
T PRK02083 110 PELISEAADRF 120 (253)
T ss_pred cHHHHHHHHHc
Confidence 99999998853
No 76
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.44 E-value=3.3e-06 Score=80.57 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=93.7
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCCcc--
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPFAN-- 261 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~~~-- 261 (399)
.+.++.+..+|+|.|-|..+- ... .++++.+.+.+|.+ .+++.+.....
T Consensus 86 ~~d~~~~~~~Ga~~vivgt~~-----------------------~~~----p~~~~~~~~~~~~~~iv~slD~~~g~~~~ 138 (254)
T TIGR00735 86 IEDVDKLLRAGADKVSINTAA-----------------------VKN----PELIYELADRFGSQCIVVAIDAKRVYVNS 138 (254)
T ss_pred HHHHHHHHHcCCCEEEEChhH-----------------------hhC----hHHHHHHHHHcCCCCEEEEEEeccCCCCC
Confidence 555677777899999865321 111 24555566666744 24554332110
Q ss_pred -----cC-CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHH
Q 015862 262 -----YM-ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKA 334 (399)
Q Consensus 262 -----~~-~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~ 334 (399)
.. ..+......+..++++.|++.|++.+.++..... .....+++++++.+++.+++||+++|++ ++++++++
T Consensus 139 ~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~-g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~ 217 (254)
T TIGR00735 139 YCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKD-GTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEA 217 (254)
T ss_pred CccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcc-cCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH
Confidence 00 0011112334678999999999999988753221 1223456788899999999999999999 89999999
Q ss_pred HHcCCCcEEEechHHhhC
Q 015862 335 IAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 335 L~~G~~D~V~~gR~~iad 352 (399)
++.|.+|+|++|+++...
T Consensus 218 ~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 218 FTKGKADAALAASVFHYR 235 (254)
T ss_pred HHcCCcceeeEhHHHhCC
Confidence 999999999999998753
No 77
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.44 E-value=1.6e-06 Score=86.70 Aligned_cols=122 Identities=18% Similarity=0.227 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++++.|+.+.+.||..++|+.+.. + ..--.+.+++||+++|++ .|.+..|.
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~--------------------~----~~~d~~~v~air~~~g~~~~l~vDaN~--- 195 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYP--------------------T----ADEDLAVVRSIRQAVGDGVGLMVDYNQ--- 195 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCC--------------------C----hHhHHHHHHHHHHhhCCCCEEEEeCCC---
Confidence 3456777778889999999986520 1 122378899999999986 46665543
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.++++++++.|++.+++|++ +|. ....++..+.+++.+++||++...+ ++.++..+++.+.+
T Consensus 196 ------~~~~~~A~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~ 261 (355)
T cd03321 196 ------SLTVPEAIERGQALDQEGLTWIE--EPT------LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGAC 261 (355)
T ss_pred ------CcCHHHHHHHHHHHHcCCCCEEE--CCC------CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCC
Confidence 33567899999999999999988 442 1224567788999999999888887 89999999999999
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|+|-+
T Consensus 262 d~i~~ 266 (355)
T cd03321 262 DLVMP 266 (355)
T ss_pred CeEec
Confidence 98764
No 78
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.44 E-value=2.7e-06 Score=79.74 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=62.9
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.++++......... ..+++.++.+++.+++||+++||+ ++++++++++.| +|.|++||+++.+
T Consensus 147 ~~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G-adgv~ig~a~~~~ 224 (230)
T TIGR00007 147 LEELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLG-VYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEeHHHHcC
Confidence 4568899999999988876543322222 346778888999999999999999 899999999877 9999999999876
No 79
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.43 E-value=2.2e-06 Score=82.04 Aligned_cols=84 Identities=20% Similarity=0.114 Sum_probs=66.9
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.+-++.......+.. ++++.++.+++.+++||+++||+ +.+++.++++..+||.|.+|+++.-.
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 46788999999999988876554333333 47788899999999999999999 89999999954459999999999877
Q ss_pred CcHHHH
Q 015862 353 PDLPRR 358 (399)
Q Consensus 353 Pdl~~k 358 (399)
-+-+.+
T Consensus 233 ~~~~~~ 238 (258)
T PRK01033 233 GVYKAV 238 (258)
T ss_pred cccccc
Confidence 444333
No 80
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.42 E-value=3.1e-06 Score=85.53 Aligned_cols=121 Identities=16% Similarity=0.257 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCccc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANY 262 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~ 262 (399)
++++.|+.+++.||..++|+.+. .+ .+.-.+.|++||+++|++ .+.|..|.
T Consensus 163 ~~~~~a~~~~~~Gf~~~Kikvg~--------------------~~----~~~di~~v~avRe~~G~~~~l~vDaN~---- 214 (385)
T cd03326 163 RLRDEMRRYLDRGYTVVKIKIGG--------------------AP----LDEDLRRIEAALDVLGDGARLAVDANG---- 214 (385)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC--------------------CC----HHHHHHHHHHHHHhcCCCCeEEEECCC----
Confidence 35666677788999999998642 01 123479999999999987 47776654
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC-
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA- 340 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~- 340 (399)
..+.++++++++.|+++++.|++ +|. .....+..+.+++.+++||++...+ |+.++.++++.+.+
T Consensus 215 -----~w~~~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~ 281 (385)
T cd03326 215 -----RFDLETAIAYAKALAPYGLRWYE--EPG------DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMR 281 (385)
T ss_pred -----CCCHHHHHHHHHHhhCcCCCEEE--CCC------CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCcc
Confidence 23577899999999999999988 552 1234567788999999999998888 99999999999877
Q ss_pred ---cEEEe
Q 015862 341 ---DLVVY 345 (399)
Q Consensus 341 ---D~V~~ 345 (399)
|+|-+
T Consensus 282 ~~~div~~ 289 (385)
T cd03326 282 PDRDVLQF 289 (385)
T ss_pred ccCCEEEe
Confidence 88754
No 81
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.40 E-value=2.7e-06 Score=79.32 Aligned_cols=131 Identities=21% Similarity=0.182 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++.+.++|.|.|.+..... .+.+ + ..+.++++++++.. .-++.+.+.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~------------~~p~--~-------~~~~~~i~~~~~~g-~~~iiv~v~-------- 131 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDR------------PRPD--G-------ETLAELIKRIHEEY-NCLLMADIS-------- 131 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC------------CCCC--C-------cCHHHHHHHHHHHh-CCeEEEECC--------
Confidence 4456888999999999875331 0010 0 24578898888875 324554322
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccc--ccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKT--REEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~--~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
+.++ +..+.+.|+|++.+....... ........+.++.+++.+++||+++||+ |++++.++++.| +|+
T Consensus 132 ----t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G-adg 202 (219)
T cd04729 132 ----TLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELG-ADA 202 (219)
T ss_pred ----CHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC-CCE
Confidence 2233 355677899998653211111 1112234578889999999999999999 899999999999 999
Q ss_pred EEechHHhhCCcH
Q 015862 343 VVYGRLFLANPDL 355 (399)
Q Consensus 343 V~~gR~~iadPdl 355 (399)
|++|++++...+.
T Consensus 203 V~vGsal~~~~~~ 215 (219)
T cd04729 203 VVVGSAITRPEHI 215 (219)
T ss_pred EEEchHHhChHhH
Confidence 9999997655444
No 82
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.38 E-value=8e-06 Score=81.26 Aligned_cols=102 Identities=20% Similarity=0.114 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 235 FALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 235 ~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+.-+.|+++|+..+ -||.+|--. +. +.++.+.+.|+|.|.++...-.+.+..+..++.+..|++
T Consensus 208 ~~~~~l~~lr~~~~-~PvivKgv~-----------~~----~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~ 271 (351)
T cd04737 208 LSPADIEFIAKISG-LPVIVKGIQ-----------SP----EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAE 271 (351)
T ss_pred CCHHHHHHHHHHhC-CcEEEecCC-----------CH----HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHH
Confidence 45688999999885 388888211 12 345677789999999853211112222333456777888
Q ss_pred hc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 315 AF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 315 ~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
++ ++||++.||| +..++.++|.-| +|+|++||+++-..
T Consensus 272 a~~~~i~vi~dGGIr~g~Di~kaLalG-A~~V~iGr~~l~~l 312 (351)
T cd04737 272 AVNHRVPIIFDSGVRRGEHVFKALASG-ADAVAVGRPVLYGL 312 (351)
T ss_pred HhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence 87 5999999999 899999999998 99999999999754
No 83
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=3.3e-06 Score=83.56 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=115.2
Q ss_pred HHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCCh
Q 015862 191 NAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNP 270 (399)
Q Consensus 191 ~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~ 270 (399)
..+.--.-||+||+|| |..|.-...-|+.+..-..-+..|+..+-+.+. -+|..+|+. -++
T Consensus 101 ~lv~nDvsgidiN~gC---------pK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~-vpvtckIR~---------L~s 161 (477)
T KOG2334|consen 101 KLVDNDVSGIDINMGC---------PKEFSIHGGMGAALLTDPDKLVAILYSLVKGNK-VPVTCKIRL---------LDS 161 (477)
T ss_pred HHhhcccccccccCCC---------CCccccccCCCchhhcCHHHHHHHHHHHHhcCc-ccceeEEEe---------cCC
Confidence 3344456789999999 777777777788887777778888888888762 277777765 234
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCC-C---HHHHHHHHHcCCCcEEEe
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGY-D---REDGNKAIAEGRADLVVY 345 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t---~~~a~~~L~~G~~D~V~~ 345 (399)
.++++++.+++.+.|+..+.+|.++......++...+.++.+-..++ +||+++|+. + ..|.+...+...+|.|++
T Consensus 162 ~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmi 241 (477)
T KOG2334|consen 162 KEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMI 241 (477)
T ss_pred cccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhh
Confidence 56688999999999999999998876655455666778888888887 999999997 5 567777777667999999
Q ss_pred chHHhhCCcHH
Q 015862 346 GRLFLANPDLP 356 (399)
Q Consensus 346 gR~~iadPdl~ 356 (399)
+|.+..||-.+
T Consensus 242 AR~A~~n~SiF 252 (477)
T KOG2334|consen 242 ARAAESNPSIF 252 (477)
T ss_pred hHhhhcCCcee
Confidence 99999999654
No 84
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.35 E-value=8.4e-06 Score=83.18 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++++.|+.+++.||..++|+.+. + .+.-.+.|++||+++|++ .|.|..|.
T Consensus 198 ~~~~~~a~~~~~~Gf~~~KiKvg~---------------------~----~~~d~~~v~avRe~vG~~~~L~vDaN~--- 249 (415)
T cd03324 198 EKLRRLCKEALAQGFTHFKLKVGA---------------------D----LEDDIRRCRLAREVIGPDNKLMIDANQ--- 249 (415)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---------------------C----HHHHHHHHHHHHHhcCCCCeEEEECCC---
Confidence 345666777778899999998541 1 223478999999999987 46666553
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc---CCcEEEeCCC-CHHHHHHHHHc
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF---KGTFLVAGGY-DREDGNKAIAE 337 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~---~~pvi~~Ggi-t~~~a~~~L~~ 337 (399)
..+.++++++++.|++.++.|++ +|. .....+..+.+++.+ ++||.+...+ ++.++..+++.
T Consensus 250 ------~w~~~~A~~~~~~L~~~~l~~iE--EP~------~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~ 315 (415)
T cd03324 250 ------RWDVPEAIEWVKQLAEFKPWWIE--EPT------SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA 315 (415)
T ss_pred ------CCCHHHHHHHHHHhhccCCCEEE--CCC------CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc
Confidence 33568899999999999999988 552 123456677788888 5999887777 89999999999
Q ss_pred CCCcEEEe
Q 015862 338 GRADLVVY 345 (399)
Q Consensus 338 G~~D~V~~ 345 (399)
+.+|++.+
T Consensus 316 ~a~dil~~ 323 (415)
T cd03324 316 GAIDVVQI 323 (415)
T ss_pred CCCCEEEe
Confidence 99998863
No 85
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.35 E-value=6.7e-05 Score=72.59 Aligned_cols=141 Identities=19% Similarity=0.153 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceE---EEecCCcccC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVG---IRLSPFANYM 263 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~---vrls~~~~~~ 263 (399)
+.++.|.++||+.|++-+-+ -+.+...++..++++-.++. |- +|. ..+...++..
T Consensus 88 e~i~~Al~~G~tsVm~d~s~--------------------~~~~eni~~t~~v~~~a~~~-gv-~veaE~ghlG~~d~~~ 145 (281)
T PRK06806 88 EKIKEALEIGFTSVMFDGSH--------------------LPLEENIQKTKEIVELAKQY-GA-TVEAEIGRVGGSEDGS 145 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeECCccCCc
Confidence 35566888999999988654 14566777888888777764 21 222 2454332211
Q ss_pred CC-C-CCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc--CCCchhhHHHHhhcCCcEEEeC--CCCHHHHHHHHHc
Q 015862 264 ES-G-DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK--SECPHSLLPMRKAFKGTFLVAG--GYDREDGNKAIAE 337 (399)
Q Consensus 264 ~~-~-~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~ir~~~~~pvi~~G--git~~~a~~~L~~ 337 (399)
.. + ...+.+++.+++ ++.|+|||-++-+.....+.. .-..+.+++|++.+++|+++-| |++.++..++++.
T Consensus 146 ~~~g~s~t~~eea~~f~---~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~ 222 (281)
T PRK06806 146 EDIEMLLTSTTEAKRFA---EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQH 222 (281)
T ss_pred ccccceeCCHHHHHHHH---HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHc
Confidence 10 1 112344433333 457999999865554333322 2245678999999999999999 8999999999999
Q ss_pred CCCcEEEechHHhhCC
Q 015862 338 GRADLVVYGRLFLANP 353 (399)
Q Consensus 338 G~~D~V~~gR~~iadP 353 (399)
| ++.|.+.+.+..+|
T Consensus 223 G-~~kinv~T~i~~a~ 237 (281)
T PRK06806 223 G-IRKINVATATFNSV 237 (281)
T ss_pred C-CcEEEEhHHHHHHH
Confidence 9 99999999999854
No 86
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.35 E-value=1.9e-06 Score=82.28 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=74.0
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.+|++.-.... .....+++.++.+++.+++||+++||+ +.+++++++..| +|.|.+|+.++.|
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G-a~~vivgt~~~~~ 109 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASS-EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAG-ADKVSINTAAVKN 109 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCccc-ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhhC
Confidence 4568999999999999998654221 133456778899999999999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|++++++.+-
T Consensus 110 p~~~~~~~~~ 119 (254)
T TIGR00735 110 PELIYELADR 119 (254)
T ss_pred hHHHHHHHHH
Confidence 9999998763
No 87
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=98.32 E-value=1.4e-05 Score=81.28 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcc--cCc----ccCCCCC---CC-C-chhhhhHHHHHHHHHHHHHhCCC-c
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFL--KDQ----VNDRTDQ---YG-G-SLENRCRFALEIVEAVSNEIGAD-R 251 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFl--Sp~----~N~R~D~---yG-G-slenR~r~~~eii~avR~~vg~~-~ 251 (399)
++.+.|..+.+.||+.++|+.+..-+ .... ++. .+.-.|. +. + ..+.-.+...+.|++||+++|++ .
T Consensus 130 ~~~~~a~~~~~~Gf~~~KiKvg~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~ 208 (404)
T PRK15072 130 ELLDDVARHLELGYKAIRVQCGVPGL-KTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLH 208 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCce
Confidence 35566677778999999999753100 0000 000 0000010 00 0 11223466789999999999986 4
Q ss_pred eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHH
Q 015862 252 VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DRED 330 (399)
Q Consensus 252 v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~ 330 (399)
|.+..|. ..+.++++++++.|++.++.|++ +|. .....+..+.+++.+++||++...+ ++.+
T Consensus 209 l~vDaN~---------~w~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~ 271 (404)
T PRK15072 209 LLHDVHH---------RLTPIEAARLGKSLEPYRLFWLE--DPT------PAENQEAFRLIRQHTTTPLAVGEVFNSIWD 271 (404)
T ss_pred EEEECCC---------CCCHHHHHHHHHhccccCCcEEE--CCC------CccCHHHHHHHHhcCCCCEEeCcCccCHHH
Confidence 6665553 33578899999999999999988 552 1224567778999999999888887 8999
Q ss_pred HHHHHHcCCCcEEEe
Q 015862 331 GNKAIAEGRADLVVY 345 (399)
Q Consensus 331 a~~~L~~G~~D~V~~ 345 (399)
+..+++.+.+|+|-+
T Consensus 272 ~~~li~~~a~dii~~ 286 (404)
T PRK15072 272 CKQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHHcCCCCEEec
Confidence 999999999998874
No 88
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.30 E-value=8.3e-06 Score=81.40 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 235 FALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 235 ~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+.-+-|+++|+.++ -||.||= . . . .+.++.+.+.|+|.|.|+...-.+.+..+..++.+.++++
T Consensus 215 ~~w~~i~~l~~~~~-~PvivKG-v---------~-~----~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~ 278 (367)
T TIGR02708 215 LSPRDIEEIAGYSG-LPVYVKG-P---------Q-C----PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAE 278 (367)
T ss_pred CCHHHHHHHHHhcC-CCEEEeC-C---------C-C----HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHH
Confidence 33478899998874 3788881 1 1 1 3456677889999887654322222333344577888888
Q ss_pred hcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 315 AFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 315 ~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+++ +||+++||| +..++.++|+-| ||+|++||+++.
T Consensus 279 av~~~i~vi~dGGIr~g~Dv~KaLalG-Ad~V~igR~~l~ 317 (367)
T TIGR02708 279 AVDKRVPIVFDSGVRRGQHVFKALASG-ADLVALGRPVIY 317 (367)
T ss_pred HhCCCCcEEeeCCcCCHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 874 899999999 899999999988 999999999765
No 89
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.29 E-value=2.7e-05 Score=71.57 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=59.7
Q ss_pred HHhhhhhCceEEEEeCCCccc-c--cccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 278 AESLNKYGILYCHMVEPRMKT-R--EEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 278 ~~~Le~~Gvd~l~v~~~~~~~-~--~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
++.+++.|+||+.++. .+.. . ......+..++.+++.+++||++.||++++++.++++.| +|+|++++++...++
T Consensus 108 a~~a~~~Gadyi~~g~-v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~G-a~gvav~s~i~~~~~ 185 (201)
T PRK07695 108 AIQAEKNGADYVVYGH-VFPTDCKKGVPARGLEELSDIARALSIPVIAIGGITPENTRDVLAAG-VSGIAVMSGIFSSAN 185 (201)
T ss_pred HHHHHHcCCCEEEECC-CCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEHHHhcCCC
Confidence 4556778999986532 1211 1 111223467778888889999999999999999999998 999999999997666
Q ss_pred HHHHHH
Q 015862 355 LPRRFE 360 (399)
Q Consensus 355 l~~k~~ 360 (399)
....++
T Consensus 186 p~~~~~ 191 (201)
T PRK07695 186 PYSKAK 191 (201)
T ss_pred HHHHHH
Confidence 555544
No 90
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=98.28 E-value=1.3e-05 Score=80.47 Aligned_cols=114 Identities=13% Similarity=0.210 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++.+.|+.+.+.||..++|.. .+.|++||+++|++ .|.+..|.
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv--------------------------------~~~v~avre~~G~~~~l~vDaN~--- 172 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL--------------------------------PKLFEAVREKFGFEFHLLHDVHH--- 172 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH--------------------------------HHHHHHHHhccCCCceEEEECCC---
Confidence 3456667777788999999863 67899999999986 46665543
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.++++++++.|++.++.|++ +|. .....+..+.+++..++||++...+ ++.++.++++.+.+
T Consensus 173 ------~w~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~ 238 (361)
T cd03322 173 ------RLTPNQAARFGKDVEPYRLFWME--DPT------PAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLI 238 (361)
T ss_pred ------CCCHHHHHHHHHHhhhcCCCEEE--CCC------CcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCC
Confidence 23577899999999999999988 542 1224567778999999999888877 89999999999999
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|++-+
T Consensus 239 di~~~ 243 (361)
T cd03322 239 DYIRT 243 (361)
T ss_pred CEEec
Confidence 98754
No 91
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.27 E-value=2.2e-05 Score=76.94 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=87.2
Q ss_pred HHHHhC--CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCC
Q 015862 191 NAIEAG--FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDS 268 (399)
Q Consensus 191 ~a~~aG--fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~ 268 (399)
..+++| .|.|-|..+||+ .+.+++.|+.||+..+. ++.|.=+. .
T Consensus 101 ~lv~a~~~~d~i~~D~ahg~------------------------s~~~~~~i~~i~~~~p~-~~vi~GnV---------~ 146 (321)
T TIGR01306 101 QLAEEALTPEYITIDIAHGH------------------------SNSVINMIKHIKTHLPD-SFVIAGNV---------G 146 (321)
T ss_pred HHHhcCCCCCEEEEeCccCc------------------------hHHHHHHHHHHHHhCCC-CEEEEecC---------C
Confidence 345667 699999999974 35779999999998843 32222111 1
Q ss_pred ChHHHHHHHHHhhhhhCceEEEEeCC--C-cccc-c--ccCC--CchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCC
Q 015862 269 NPEALGLYMAESLNKYGILYCHMVEP--R-MKTR-E--EKSE--CPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 269 ~~~~~~~~l~~~Le~~Gvd~l~v~~~--~-~~~~-~--~~~~--~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
..+.++.|.++|+|.|.++-+ + .+.. . ...+ ....+..+++++++|||+.||+ +..|+.++|..|
T Consensus 147 -----t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G- 220 (321)
T TIGR01306 147 -----TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFG- 220 (321)
T ss_pred -----CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC-
Confidence 234677788899999988732 2 1110 0 1111 2345677888889999999999 899999999998
Q ss_pred CcEEEechHHhhCC
Q 015862 340 ADLVVYGRLFLANP 353 (399)
Q Consensus 340 ~D~V~~gR~~iadP 353 (399)
||+|++||.|..--
T Consensus 221 Ad~Vmig~~~ag~~ 234 (321)
T TIGR01306 221 ASMVMIGSLFAGHE 234 (321)
T ss_pred CCEEeechhhcCcc
Confidence 99999999986533
No 92
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.23 E-value=2.4e-05 Score=79.33 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc---c-----cccCCC
Q 015862 234 RFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT---R-----EEKSEC 305 (399)
Q Consensus 234 r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~---~-----~~~~~~ 305 (399)
.-+.++|+.+|+..+..+|++|+... . ..+ ++++.++..|+|+|+|+...-.. + ....+.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~--------~-~~~---~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt 266 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAG--------H-GEG---DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPT 266 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCC--------C-CHH---HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccH
Confidence 35789999999998745899999873 1 222 46666777779999997542111 0 001122
Q ss_pred chhhHHHHhhc-------CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 306 PHSLLPMRKAF-------KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 306 ~~~~~~ir~~~-------~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
...+..+++++ ++||++.||+ |..++.++|.-| ||+|.+||+++.
T Consensus 267 ~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLG-Ad~V~ig~~~l~ 319 (392)
T cd02808 267 ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALG-ADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcC-CCeeeechHHHH
Confidence 22344454443 5899999999 999999999999 999999999995
No 93
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.19 E-value=7.1e-05 Score=71.37 Aligned_cols=140 Identities=15% Similarity=0.027 Sum_probs=94.8
Q ss_pred CCCCChhHHHHHHH------------HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHH
Q 015862 170 PRRLRTDEIPQIVN------------DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFAL 237 (399)
Q Consensus 170 p~~mt~~eI~~ii~------------~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~ 237 (399)
.|.=+.++|.+|.+ .|..-|....++|.|.|+ +. .|.|-+-
T Consensus 49 ~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID---aT------------------------~r~rP~~ 101 (283)
T cd04727 49 ARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID---ES------------------------EVLTPAD 101 (283)
T ss_pred eecCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe---cc------------------------CCCCcHH
Confidence 44456666666654 678889999999999995 22 1222357
Q ss_pred HHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc------------------
Q 015862 238 EIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR------------------ 299 (399)
Q Consensus 238 eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~------------------ 299 (399)
+++..+|+.. .-++.-.++ +.++++. -.+.|+|+|-.+...+...
T Consensus 102 ~~~~~iK~~~-~~l~MAD~s------------tleEal~----a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~ 164 (283)
T cd04727 102 EEHHIDKHKF-KVPFVCGAR------------NLGEALR----RISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKL 164 (283)
T ss_pred HHHHHHHHHc-CCcEEccCC------------CHHHHHH----HHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 8888888876 223433222 3444433 3356888886543111110
Q ss_pred ------------cccCCCchhhHHHHhhcCCcEE--EeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 300 ------------EEKSECPHSLLPMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 300 ------------~~~~~~~~~~~~ir~~~~~pvi--~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
....+.+++++.+++.+++||+ +.||| |++++..+++.| ||.|+++++++..++
T Consensus 165 ~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaVGSAI~~a~d 233 (283)
T cd04727 165 QSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSEN 233 (283)
T ss_pred hCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHhhcCCC
Confidence 0112355778889999999987 99999 999999999998 999999999996443
No 94
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.19 E-value=2.6e-05 Score=80.45 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
+..+-|..+.++|+|.|+|.++||+ ...+.+.|+.||+..++-+|.+.-
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~------------------------~~~~~~~i~~i~~~~~~~~vi~G~------- 272 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGH------------------------SIYVIDSIKEIKKTYPDLDIIAGN------- 272 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCc------------------------HhHHHHHHHHHHHhCCCCCEEEEe-------
Confidence 3446667788999999999999851 135789999999987543555511
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeC--CCc-ccc---cccCCCchhhHHHHh---hcCCcEEEeCCC-CHHHHHH
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVE--PRM-KTR---EEKSECPHSLLPMRK---AFKGTFLVAGGY-DREDGNK 333 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~--~~~-~~~---~~~~~~~~~~~~ir~---~~~~pvi~~Ggi-t~~~a~~ 333 (399)
-.+.+ -++.|.++|+|+|.+.- +.. ... ....+....+..+.+ ..++|||+.||+ ++.++.+
T Consensus 273 ----v~t~~----~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~k 344 (450)
T TIGR01302 273 ----VATAE----QAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVK 344 (450)
T ss_pred ----CCCHH----HHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH
Confidence 11233 45566678999997642 211 110 012223334344433 357999999999 9999999
Q ss_pred HHHcCCCcEEEechHHhhCCcHHHHHH--hCCCC
Q 015862 334 AIAEGRADLVVYGRLFLANPDLPRRFE--LNAPL 365 (399)
Q Consensus 334 ~L~~G~~D~V~~gR~~iadPdl~~k~~--~g~~~ 365 (399)
+|+.| ||.|++|+.|..-.+-|-.+. +|+.+
T Consensus 345 Ala~G-A~~V~~G~~~a~~~e~pg~~~~~~g~~~ 377 (450)
T TIGR01302 345 ALAAG-ADAVMLGSLLAGTTESPGEYEIINGRRY 377 (450)
T ss_pred HHHcC-CCEEEECchhhcCCcCCCceEEECCEEE
Confidence 99999 999999999988777766543 45443
No 95
>PRK14017 galactonate dehydratase; Provisional
Probab=98.19 E-value=4.6e-05 Score=77.04 Aligned_cols=130 Identities=20% Similarity=0.318 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++++.|+.+++.||..++|+.+.. ...+++ ..-...-.+.|++||+++|++ .|.+.-|.
T Consensus 126 ~~~~~~a~~~~~~Gf~~~KiKv~~~--------------~~~~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~--- 186 (382)
T PRK14017 126 ADVAEAARARVERGFTAVKMNGTEE--------------LQYIDS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG--- 186 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcCC--------------cccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC---
Confidence 3456666777789999999986310 011111 001234589999999999986 46665553
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.++++++++.|++.++.|++ +|. .....+..+.+++.+++||++...+ ++.++..+++.+.+
T Consensus 187 ------~w~~~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~ 252 (382)
T PRK14017 187 ------RVHKPMAKVLAKELEPYRPMFIE--EPV------LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV 252 (382)
T ss_pred ------CCCHHHHHHHHHhhcccCCCeEE--CCC------CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC
Confidence 23567899999999999999988 552 1224567788999999999988887 89999999999999
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|+|-+
T Consensus 253 d~v~~ 257 (382)
T PRK14017 253 DIIQP 257 (382)
T ss_pred CeEec
Confidence 98854
No 96
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.19 E-value=0.00024 Score=69.14 Aligned_cols=145 Identities=18% Similarity=0.186 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEec---CCccc-C
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS---PFANY-M 263 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls---~~~~~-~ 263 (399)
.++.|.++||+-|.+-+.+ -++++..+..+++++..+.. |- +|-..+. ..++. .
T Consensus 91 ~i~~ai~~GftSVm~d~S~--------------------l~~eEni~~t~~v~~~a~~~-gv-~vE~ElG~i~g~ed~~~ 148 (293)
T PRK07315 91 DALECIEVGYTSIMFDGSH--------------------LPVEENLKLAKEVVEKAHAK-GI-SVEAEVGTIGGEEDGII 148 (293)
T ss_pred HHHHHHHcCCCEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEecCcccCcCcccc
Confidence 3457778999999988665 24677777888887777653 21 2333222 11111 1
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccc---cCCCchhhHHHHhhc-CCcEEEeCC--CCHHHHHHHHHc
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREE---KSECPHSLLPMRKAF-KGTFLVAGG--YDREDGNKAIAE 337 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~---~~~~~~~~~~ir~~~-~~pvi~~Gg--it~~~a~~~L~~ 337 (399)
+.....+.+++.++. +.|+|||-++-+.....+. .....+.++.|++.+ ++|++.-|| ++.+++.++++.
T Consensus 149 g~s~~t~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~ 224 (293)
T PRK07315 149 GKGELAPIEDAKAMV----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKL 224 (293)
T ss_pred CccCCCCHHHHHHHH----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHc
Confidence 111113455554444 5799999987554322221 224567889999999 599988888 899999999999
Q ss_pred CCCcEEEechHHhhCCcHHHHHHh
Q 015862 338 GRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 338 G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
| ++-|.+.+.+.. ++.+.+++
T Consensus 225 G-i~KiNv~T~i~~--~~~~~~~~ 245 (293)
T PRK07315 225 G-VAKVNVNTECQI--AFANATRK 245 (293)
T ss_pred C-CCEEEEccHHHH--HHHHHHHH
Confidence 9 999999999987 55444443
No 97
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.18 E-value=3.9e-05 Score=75.25 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGD 267 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~ 267 (399)
....+.+.|.+.|.++.+. | .++++.+|+. |- .|...++
T Consensus 79 ~~~~~~~~~v~~v~~~~g~---------p--------------------~~~i~~lk~~-g~-~v~~~v~---------- 117 (307)
T TIGR03151 79 LVDLVIEEKVPVVTTGAGN---------P--------------------GKYIPRLKEN-GV-KVIPVVA---------- 117 (307)
T ss_pred HHHHHHhCCCCEEEEcCCC---------c--------------------HHHHHHHHHc-CC-EEEEEcC----------
Confidence 3345577899999875433 1 2577888775 32 3333222
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
..+.++.+++.|+|+|.++.............+..+..+++.+++||+++||+ +++++.++|+.| +|.|++|
T Consensus 118 ------s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G-A~gV~iG 190 (307)
T TIGR03151 118 ------SVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG-AEAVQMG 190 (307)
T ss_pred ------CHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CCEeecc
Confidence 13456788899999998865422211112234567888999999999999999 899999999987 9999999
Q ss_pred hHHhhCCc
Q 015862 347 RLFLANPD 354 (399)
Q Consensus 347 R~~iadPd 354 (399)
+.|+.-++
T Consensus 191 t~f~~t~E 198 (307)
T TIGR03151 191 TRFLCAKE 198 (307)
T ss_pred hHHhcccc
Confidence 99997653
No 98
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.17 E-value=4.3e-05 Score=76.42 Aligned_cols=128 Identities=22% Similarity=0.330 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYM 263 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~ 263 (399)
..+.++.+.+.||..++|+.+.+. + ..| + ..-.+.-++.|++||+++|++ .|.|..|.
T Consensus 127 ~~~~~~~~~~~Gf~~~KiKvg~~~-------~----~~~--~---~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----- 185 (352)
T cd03325 127 VAEAARARREAGFTAVKMNATEEL-------Q----WID--T---SKKVDAAVERVAALREAVGPDIDIGVDFHG----- 185 (352)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCc-------c----cCC--C---HHHHHHHHHHHHHHHHhhCCCCEEEEECCC-----
Confidence 345566667899999999976310 0 001 0 011334589999999999986 46655543
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
..+.++++++++.|++.++.|++ +|. ....+...+.+++..++||++...+ +++++..+++.+.+|+
T Consensus 186 ----~~~~~~A~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~ 253 (352)
T cd03325 186 ----RVSKPMAKDLAKELEPYRLLFIE--EPV------LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDI 253 (352)
T ss_pred ----CCCHHHHHHHHHhccccCCcEEE--CCC------CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCE
Confidence 33578899999999999999988 552 1224567788999999999888877 9999999999999998
Q ss_pred EEe
Q 015862 343 VVY 345 (399)
Q Consensus 343 V~~ 345 (399)
|-+
T Consensus 254 v~~ 256 (352)
T cd03325 254 IQP 256 (352)
T ss_pred Eec
Confidence 854
No 99
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.16 E-value=9.1e-05 Score=73.46 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+-+....++|.|.|-|..+||| .+...+.++.||+..+.-+|..= |.
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~------------------------s~~~~~~ik~ik~~~~~~~viaG-NV------- 157 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH------------------------SEHVIDMIKKIKKKFPDVPVIAG-NV------- 157 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT------------------------SHHHHHHHHHHHHHSTTSEEEEE-EE-------
T ss_pred HHHHHHHHHcCCCEEEccccCcc------------------------HHHHHHHHHHHHHhCCCceEEec-cc-------
Confidence 55566678899999999999974 34567889999999874344330 11
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCC---cccc---cccCCCchh---hHHHHhhcCCcEEEeCCC-CHHHHHHHH
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPR---MKTR---EEKSECPHS---LLPMRKAFKGTFLVAGGY-DREDGNKAI 335 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~---~~~~---~~~~~~~~~---~~~ir~~~~~pvi~~Ggi-t~~~a~~~L 335 (399)
- +.+.++.|.++|+|.|-|--+. +... .-..+.... ...+++...+|||+-||+ +.-++.++|
T Consensus 158 ---~----T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAl 230 (352)
T PF00478_consen 158 ---V----TYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKAL 230 (352)
T ss_dssp --------SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHH
T ss_pred ---C----CHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeee
Confidence 1 2345666888999999885332 1110 112233322 233455568999999999 899999999
Q ss_pred HcCCCcEEEechHHhhCCcH
Q 015862 336 AEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 336 ~~G~~D~V~~gR~~iadPdl 355 (399)
.-| +|.||||+.|-.--+-
T Consensus 231 a~G-Ad~VMlG~llAgt~Es 249 (352)
T PF00478_consen 231 AAG-ADAVMLGSLLAGTDES 249 (352)
T ss_dssp HTT--SEEEESTTTTTBTTS
T ss_pred eec-ccceeechhhccCcCC
Confidence 999 9999999988765443
No 100
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.15 E-value=2.7e-05 Score=81.13 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
..+-|..+.++|.|.|+|.++|| +..+..+.|++||+..+.-+|.. .
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G------------------------~s~~~~~~i~~ik~~~~~~~v~a---G------ 288 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQG------------------------NSIYQIDMIKKLKSNYPHVDIIA---G------ 288 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCC------------------------CchHHHHHHHHHHhhCCCceEEE---C------
Confidence 36677788899999999999885 12456889999999875324444 1
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeC--CCc-ccc---cccCCCchhhHH---HHhhcCCcEEEeCCC-CHHHHHHH
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVE--PRM-KTR---EEKSECPHSLLP---MRKAFKGTFLVAGGY-DREDGNKA 334 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~--~~~-~~~---~~~~~~~~~~~~---ir~~~~~pvi~~Ggi-t~~~a~~~ 334 (399)
.-.+.+ -++.+.++|+|+|.+.- +.. ... ....+....+.. +.+..++|||+.||+ ++.++.++
T Consensus 289 --~V~t~~----~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kA 362 (495)
T PTZ00314 289 --NVVTAD----QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKA 362 (495)
T ss_pred --CcCCHH----HHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 111233 45566789999997632 211 110 111222233223 334467999999999 99999999
Q ss_pred HHcCCCcEEEechHHhhCCcHHHH--HHhCCCC
Q 015862 335 IAEGRADLVVYGRLFLANPDLPRR--FELNAPL 365 (399)
Q Consensus 335 L~~G~~D~V~~gR~~iadPdl~~k--~~~g~~~ 365 (399)
|+.| +|+|++|+.|..--+.+.+ +++|+.+
T Consensus 363 la~G-A~~Vm~G~~~a~~~e~~~~~~~~~g~~~ 394 (495)
T PTZ00314 363 LALG-ADCVMLGSLLAGTEEAPGEYFFKDGVRL 394 (495)
T ss_pred HHcC-CCEEEECchhccccccCCceeeeCCeEE
Confidence 9999 9999999998775554443 2345443
No 101
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.15 E-value=3.9e-05 Score=77.42 Aligned_cols=134 Identities=21% Similarity=0.144 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
..+-+..+.++|.|.|-|.++||+ .+.+.++++.||+.+++-.|.+.--.
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~------------------------~~~~~~~v~~ik~~~p~~~vi~g~V~------ 203 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGH------------------------STRIIELVKKIKTKYPNLDLIAGNIV------ 203 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC------------------------ChhHHHHHHHHHhhCCCCcEEEEecC------
Confidence 446667778899999999999852 13468999999999864344331111
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCC---cccc---cccCCCchhh---HHHHhhcCCcEEEeCCC-CHHHHHHH
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPR---MKTR---EEKSECPHSL---LPMRKAFKGTFLVAGGY-DREDGNKA 334 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~---~~~~---~~~~~~~~~~---~~ir~~~~~pvi~~Ggi-t~~~a~~~ 334 (399)
+ .+-++.|.++|+|+|-+.-+. +... ....+....+ ..+.+.+++|||+-||| ++.++.++
T Consensus 204 -----T----~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KA 274 (404)
T PRK06843 204 -----T----KEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKA 274 (404)
T ss_pred -----C----HHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH
Confidence 2 334566777899998764221 1110 1112333333 33334468999999999 99999999
Q ss_pred HHcCCCcEEEechHHhhCCcHHHH
Q 015862 335 IAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 335 L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
|+-| +|.|++|+++..-.+-|-.
T Consensus 275 LalG-A~aVmvGs~~agt~Espg~ 297 (404)
T PRK06843 275 IAAG-ADSVMIGNLFAGTKESPSE 297 (404)
T ss_pred HHcC-CCEEEEcceeeeeecCCCc
Confidence 9999 9999999999886554433
No 102
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.15 E-value=7.7e-05 Score=74.19 Aligned_cols=151 Identities=17% Similarity=0.096 Sum_probs=93.8
Q ss_pred HHHHHHHHHhCCCEEEEccccchh-------hhhcccCc----ccCCCCCCCCc-hhhh------hHHHHHHHHHHHHHh
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYL-------IDQFLKDQ----VNDRTDQYGGS-LENR------CRFALEIVEAVSNEI 247 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyL-------l~qFlSp~----~N~R~D~yGGs-lenR------~r~~~eii~avR~~v 247 (399)
.+..++|+++||+++-||.....+ -..|-.|. .+.. +.+.++ .... .....+.|+.+|+..
T Consensus 134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 212 (344)
T cd02922 134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKK-TKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT 212 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccc-cccccchHHHHHhhccCCCCCHHHHHHHHHhc
Confidence 445578899999999999766322 11121111 1100 001111 1111 124568899999987
Q ss_pred CCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh---c--CCcEEE
Q 015862 248 GADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA---F--KGTFLV 322 (399)
Q Consensus 248 g~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~---~--~~pvi~ 322 (399)
+ -||.||--. +. +-++.+.+.|+|.|.++...-.......+-...+..+++. + ++|||+
T Consensus 213 ~-~PvivKgv~-----------~~----~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~ 276 (344)
T cd02922 213 K-LPIVLKGVQ-----------TV----EDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYV 276 (344)
T ss_pred C-CcEEEEcCC-----------CH----HHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4 378887221 12 3456677899999998753211111111222344455553 2 489999
Q ss_pred eCCC-CHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 323 AGGY-DREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 323 ~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
.||+ +..|+.++|.-| +|+|++||+++..+.
T Consensus 277 ~GGIr~G~Dv~kalaLG-A~aV~iG~~~l~~l~ 308 (344)
T cd02922 277 DGGVRRGTDVLKALCLG-AKAVGLGRPFLYALS 308 (344)
T ss_pred eCCCCCHHHHHHHHHcC-CCEEEECHHHHHHHh
Confidence 9999 999999999999 999999999999875
No 103
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=98.14 E-value=3.7e-05 Score=75.89 Aligned_cols=121 Identities=8% Similarity=0.096 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCccc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANY 262 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~ 262 (399)
+.++.|++.++.||..++|..|.. + ..--.+.|++||+++|++ .|.+..|.
T Consensus 121 ~~~~~a~~~~~~G~~~~KvKvG~~--------------------~----~~~d~~~v~air~~~g~~~~l~vDaN~---- 172 (320)
T PRK02714 121 AALQQWQTLWQQGYRTFKWKIGVD--------------------P----LEQELKIFEQLLERLPAGAKLRLDANG---- 172 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCC--------------------C----hHHHHHHHHHHHHhcCCCCEEEEECCC----
Confidence 345667777888999999986530 1 122378899999999876 45555443
Q ss_pred CCCCCCChHHHHHHHHHhhhh---hCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcC
Q 015862 263 MESGDSNPEALGLYMAESLNK---YGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEG 338 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~---~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 338 (399)
..+.+++.++++.|++ .++.|++ +|. .....+..+.+++.+++||++...+ ++.++..+++.+
T Consensus 173 -----~w~~~~A~~~~~~l~~l~~~~i~~iE--qP~------~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~ 239 (320)
T PRK02714 173 -----GLSLEEAKRWLQLCDRRLSGKIEFIE--QPL------PPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQG 239 (320)
T ss_pred -----CCCHHHHHHHHHHHhhccCCCccEEE--CCC------CcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC
Confidence 3357789999999987 6888888 442 1124567778999999999998888 899999999999
Q ss_pred CCcEEEe
Q 015862 339 RADLVVY 345 (399)
Q Consensus 339 ~~D~V~~ 345 (399)
.+|+|.+
T Consensus 240 a~d~v~i 246 (320)
T PRK02714 240 WRGIFVI 246 (320)
T ss_pred CCCEEEE
Confidence 9997754
No 104
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.13 E-value=6.8e-05 Score=69.36 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=75.3
Q ss_pred HHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc---cccCCCchhhHHHHhh
Q 015862 240 VEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR---EEKSECPHSLLPMRKA 315 (399)
Q Consensus 240 i~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~---~~~~~~~~~~~~ir~~ 315 (399)
+...|+.+++. .|++-.+ +.++ +...++.|+||+-+. +.+... ...+..++.++.+++.
T Consensus 94 ~~~ar~~~~~~~iIG~S~h------------~~ee----a~~A~~~g~DYv~~G-pifpT~tK~~~~~~G~~~l~~~~~~ 156 (211)
T COG0352 94 LAEARELLGPGLIIGLSTH------------DLEE----ALEAEELGADYVGLG-PIFPTSTKPDAPPLGLEGLREIREL 156 (211)
T ss_pred hHHHHHhcCCCCEEEeecC------------CHHH----HHHHHhcCCCEEEEC-CcCCCCCCCCCCccCHHHHHHHHHh
Confidence 44566777766 5676332 2333 444566789999873 323221 1223345678889998
Q ss_pred cCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 316 FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 316 ~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
.++|+++.||++++.+.++++.| +|+|++-|+++..+|....+++
T Consensus 157 ~~iP~vAIGGi~~~nv~~v~~~G-a~gVAvvsai~~a~d~~~a~~~ 201 (211)
T COG0352 157 VNIPVVAIGGINLENVPEVLEAG-ADGVAVVSAITSAADPAAAAKA 201 (211)
T ss_pred CCCCEEEEcCCCHHHHHHHHHhC-CCeEEehhHhhcCCCHHHHHHH
Confidence 88999999999999999999999 9999999999999888766553
No 105
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.13 E-value=0.00016 Score=67.68 Aligned_cols=104 Identities=12% Similarity=0.083 Sum_probs=72.4
Q ss_pred HHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--ccCCCchhhHHHHhhc
Q 015862 240 VEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--EKSECPHSLLPMRKAF 316 (399)
Q Consensus 240 i~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--~~~~~~~~~~~ir~~~ 316 (399)
+..+|+..|++ .|++ |.. .+.++. ...++.|+||+-+.. .+.... ..+...+.++++++.+
T Consensus 100 ~~~~r~~~~~~~iiG~--s~~---------~s~~~a----~~A~~~gaDYv~~Gp-v~t~tK~~~~p~gl~~l~~~~~~~ 163 (221)
T PRK06512 100 LAEAIEKHAPKMIVGF--GNL---------RDRHGA----MEIGELRPDYLFFGK-LGADNKPEAHPRNLSLAEWWAEMI 163 (221)
T ss_pred HHHHHHhcCCCCEEEe--cCC---------CCHHHH----HHhhhcCCCEEEECC-CCCCCCCCCCCCChHHHHHHHHhC
Confidence 45777777766 4665 210 112322 224468999998753 232111 1222345677788889
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 317 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 317 ~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
++||++.|||+++++.++++.| +|+|++-++++..+|....++
T Consensus 164 ~iPvvAIGGI~~~n~~~~~~~G-A~giAvisai~~~~dp~~a~~ 206 (221)
T PRK06512 164 EIPCIVQAGSDLASAVEVAETG-AEFVALERAVFDAHDPPLAVA 206 (221)
T ss_pred CCCEEEEeCCCHHHHHHHHHhC-CCEEEEhHHhhCCCCHHHHHH
Confidence 9999999999999999999999 999999999998888765554
No 106
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.11 E-value=5.2e-05 Score=68.29 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=84.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++...++|.|.|=|.+-. ..|.+-+.+++++||+.. ..+.-.++.
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~-----------------------R~Rp~~l~~li~~i~~~~--~l~MADist------- 101 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATD-----------------------RPRPETLEELIREIKEKY--QLVMADIST------- 101 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SS-----------------------SS-SS-HHHHHHHHHHCT--SEEEEE-SS-------
T ss_pred HHHHHHHHHcCCCEEEEecCC-----------------------CCCCcCHHHHHHHHHHhC--cEEeeecCC-------
Confidence 455566678999999998754 123356789999999975 345555543
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc-ccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE-EKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
.+++. ..+++|+|+|..+...+.+.. ...+..++++.+++. ++|||+-|+| ||+++.++|+.| ++.|
T Consensus 102 -----~ee~~----~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G-A~aV 170 (192)
T PF04131_consen 102 -----LEEAI----NAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELG-AHAV 170 (192)
T ss_dssp -----HHHHH----HHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT--SEE
T ss_pred -----HHHHH----HHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC-CeEE
Confidence 45433 445689999886544443211 133455677888875 8999999999 999999999999 9999
Q ss_pred EechHHhhCCcHHHHH
Q 015862 344 VYGRLFLANPDLPRRF 359 (399)
Q Consensus 344 ~~gR~~iadPdl~~k~ 359 (399)
.+|-+ |..|++..+.
T Consensus 171 VVGsA-ITrP~~It~~ 185 (192)
T PF04131_consen 171 VVGSA-ITRPQEITKR 185 (192)
T ss_dssp EE-HH-HH-HHHHHHH
T ss_pred EECcc-cCCHHHHHHH
Confidence 99975 5678766553
No 107
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=98.10 E-value=4.5e-05 Score=77.35 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=84.9
Q ss_pred HHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChH
Q 015862 193 IEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPE 271 (399)
Q Consensus 193 ~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~ 271 (399)
++.||.+++|..++| |.. |. .-.+.-.+.|++||+++|++ .|.|..+. ..+.
T Consensus 169 ~~~Gf~~~Kik~~~g--------~~~-------g~---~~~~~di~~v~avReavG~d~~l~vDaN~---------~~~~ 221 (394)
T PRK15440 169 KEMGFIGGKMPLHHG--------PAD-------GD---AGLRKNAAMVADMREKVGDDFWLMLDCWM---------SLDV 221 (394)
T ss_pred HhCCCCEEEEcCCcC--------ccc-------ch---HHHHHHHHHHHHHHHhhCCCCeEEEECCC---------CCCH
Confidence 468999999986543 100 10 11344589999999999987 47776654 3357
Q ss_pred HHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc--EEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 272 ALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT--FLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 272 ~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p--vi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
++++++++.|++.++.|++ +|. .+...+..+.+++.++.| +.+.... |+.++.++|+.+.+|+|-+
T Consensus 222 ~~Ai~~~~~le~~~l~wiE--EPl------~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 222 NYATKLAHACAPYGLKWIE--ECL------PPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred HHHHHHHHHhhhcCCccee--CCC------CcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 7899999999999999988 542 122456677899997754 4334445 8999999999999998754
No 108
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.08 E-value=8.6e-05 Score=69.34 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEe---cCCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRL---SPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrl---s~~~~~ 262 (399)
...++.|.+.|+|.|++-.-.+++. + .+.+.+.+-+.+|+++++ ++.+|+ .+
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~~~----~---------------g~~~~v~~ei~~v~~~~~--~~~lKvIlEt~---- 131 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGALK----S---------------GDWDAVEADIRAVVEAAG--GAVLKVIIETC---- 131 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHHhc----C---------------CCHHHHHHHHHHHHHhcC--CceEEEEeecC----
Confidence 5667788999999999664443221 1 235677888888888774 356666 33
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCC-CHHHHHHHHHcCC
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
..+.++...+++...+.|+|||-.+.+. . ......+.++.+++.++ ++|.++||+ |.++|.++|+.|
T Consensus 132 -----~L~~e~i~~a~~~~~~agadfIKTsTG~-~---~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aG- 201 (221)
T PRK00507 132 -----LLTDEEKVKACEIAKEAGADFVKTSTGF-S---TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAG- 201 (221)
T ss_pred -----cCCHHHHHHHHHHHHHhCCCEEEcCCCC-C---CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcC-
Confidence 2244566788888899999999876552 1 22345677888888875 679999999 999999999999
Q ss_pred CcEEEechHH
Q 015862 340 ADLVVYGRLF 349 (399)
Q Consensus 340 ~D~V~~gR~~ 349 (399)
+|.++..++.
T Consensus 202 A~riGtS~~~ 211 (221)
T PRK00507 202 ATRLGTSAGV 211 (221)
T ss_pred cceEccCcHH
Confidence 9999998764
No 109
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=98.08 E-value=4.8e-05 Score=76.50 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=84.5
Q ss_pred HHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChH
Q 015862 193 IEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPE 271 (399)
Q Consensus 193 ~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~ 271 (399)
.+.||..++|+.|.. . .+--.+.|+++|+++|++ .|.+..|. ..+.
T Consensus 154 ~~~Gf~~~KiKvg~~--------------------~----~~~d~~~v~~~re~~g~~~~l~~DaN~---------~~~~ 200 (368)
T TIGR02534 154 EEKRHRSFKLKIGAR--------------------D----PADDVAHVVAIAKALGDRASVRVDVNA---------AWDE 200 (368)
T ss_pred HhcCcceEEEEeCCC--------------------C----cHHHHHHHHHHHHhcCCCcEEEEECCC---------CCCH
Confidence 357999999986520 1 123378999999999986 35554432 3356
Q ss_pred HHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 272 ALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 272 ~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
++++++++.|++.++.|++ +|. .....+..+.+++..++||++...+ ++.++..+++.+.+|+|-+
T Consensus 201 ~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 201 RTALHYLPQLADAGVELIE--QPT------PAENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred HHHHHHHHHHHhcChhheE--CCC------CcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 7899999999999998887 542 1123456677999999999988888 8999999999998998765
No 110
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.07 E-value=0.00018 Score=67.45 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=92.6
Q ss_pred HHHHHHHHHHh-CCCEE--EEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 185 FRLAARNAIEA-GFDGV--ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 185 f~~aA~~a~~a-GfDgV--eIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
=+..|+.|+|+ |-|-| ||+..-.||+.+ +.+.+++.++.+.+.+..+=+..
T Consensus 78 Av~~a~lare~~~~~~iKlEVi~d~~~Llpd-----------------------~~~tv~aa~~L~~~Gf~vlpyc~--- 131 (248)
T cd04728 78 AVRTARLAREALGTDWIKLEVIGDDKTLLPD-----------------------PIETLKAAEILVKEGFTVLPYCT--- 131 (248)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCccccccC-----------------------HHHHHHHHHHHHHCCCEEEEEeC---
Confidence 47778888886 66766 566555444432 37889999988866544332222
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
+ ...+|+.|++.|++++-......+. .....+.++++.|++..++|||+.||| |++++.++++-| +
T Consensus 132 ------d-----d~~~ar~l~~~G~~~vmPlg~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG-A 198 (248)
T cd04728 132 ------D-----DPVLAKRLEDAGCAAVMPLGSPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG-A 198 (248)
T ss_pred ------C-----CHHHHHHHHHcCCCEeCCCCcCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC-C
Confidence 1 1347889999999988321111221 122335678889999888999999999 999999999999 9
Q ss_pred cEEEechHHhh--CCcH
Q 015862 341 DLVVYGRLFLA--NPDL 355 (399)
Q Consensus 341 D~V~~gR~~ia--dPdl 355 (399)
|.|.++.+... ||..
T Consensus 199 dgVlV~SAIt~a~dP~~ 215 (248)
T cd04728 199 DAVLLNTAIAKAKDPVA 215 (248)
T ss_pred CEEEEChHhcCCCCHHH
Confidence 99999999986 4654
No 111
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.07 E-value=9.9e-05 Score=67.86 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=42.0
Q ss_pred hHHHHhhcC-----CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 309 LLPMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 309 ~~~ir~~~~-----~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
++++++.++ .|+++.||++++.+.++++.| +|.|.+|++++..+|....++
T Consensus 152 i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~g-ad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 152 IREVRKMIDENGLSILIEVDGGVNDDNARELAEAG-ADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred HHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence 344555443 689999999999999999988 999999999999999766665
No 112
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.07 E-value=5.2e-05 Score=76.09 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=87.5
Q ss_pred HHHHHHHHhC-CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 187 LAARNAIEAG-FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 187 ~aA~~a~~aG-fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
+.|..+.+.| |..++|+.|.. + .+--.+.|++||+++|++ .|.+..|.
T Consensus 148 ~~~~~~~~~G~f~~~KiKvg~~--------------------~----~~~d~~~v~avr~~~g~~~~l~iDaN~------ 197 (365)
T cd03318 148 AEAEEMLEAGRHRRFKLKMGAR--------------------P----PADDLAHVEAIAKALGDRASVRVDVNQ------ 197 (365)
T ss_pred HHHHHHHhCCCceEEEEEeCCC--------------------C----hHHHHHHHHHHHHHcCCCcEEEEECCC------
Confidence 4445566788 99999996420 1 122368899999999976 35554443
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
..+.++++++++.|++.++.|++ +|. ....++..+.+++..++||++...+ +++++.++++.+.+|++
T Consensus 198 ---~~~~~~A~~~~~~l~~~~~~~iE--eP~------~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~ 266 (365)
T cd03318 198 ---AWDESTAIRALPRLEAAGVELIE--QPV------PRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVF 266 (365)
T ss_pred ---CCCHHHHHHHHHHHHhcCcceee--CCC------CcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeE
Confidence 33567899999999999998887 542 1124456778999999999888777 89999999999989988
Q ss_pred Ee
Q 015862 344 VY 345 (399)
Q Consensus 344 ~~ 345 (399)
-+
T Consensus 267 ~~ 268 (365)
T cd03318 267 SL 268 (365)
T ss_pred EE
Confidence 55
No 113
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.06 E-value=0.00017 Score=66.08 Aligned_cols=130 Identities=22% Similarity=0.170 Sum_probs=85.6
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCcccCCCCC
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANYMESGD 267 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~~~~~~ 267 (399)
++.+.++|+|+|-+|+.-+ ...+.++++.+|+. |- .+++- +++.
T Consensus 70 ~~~~~~aGad~i~~h~~~~-------------------------~~~~~~~i~~~~~~-g~-~~~v~~~~~~-------- 114 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAP-------------------------LSTIKKAVKAAKKY-GK-EVQVDLIGVE-------- 114 (202)
T ss_pred HHHHHhcCCCEEEEEeeCC-------------------------HHHHHHHHHHHHHc-CC-eEEEEEeCCC--------
Confidence 3667899999999996421 12346778888763 32 44543 4441
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEech
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR 347 (399)
+.++. .+ +...|+|++-+...............+.++.+++..+.|+++.||++++.+.++++.| +|.|.+|+
T Consensus 115 --t~~e~---~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~G-ad~vvvGs 187 (202)
T cd04726 115 --DPEKR---AK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAG-ADIVIVGR 187 (202)
T ss_pred --CHHHH---HH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcC-CCEEEEee
Confidence 23332 23 4456899987742211111111223445666666567999999999999999999998 99999999
Q ss_pred HHhhCCcHHHHHH
Q 015862 348 LFLANPDLPRRFE 360 (399)
Q Consensus 348 ~~iadPdl~~k~~ 360 (399)
+++..+++...++
T Consensus 188 ai~~~~d~~~~~~ 200 (202)
T cd04726 188 AITGAADPAEAAR 200 (202)
T ss_pred hhcCCCCHHHHHh
Confidence 9998888766554
No 114
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.06 E-value=2e-05 Score=74.00 Aligned_cols=88 Identities=20% Similarity=0.159 Sum_probs=73.2
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+..++++.+++.|++.++++.-.... .....+.+.++.+++.+++||+++||+ +.++++++++.| +|.|.+|+.++.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~-~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G-~~~vilg~~~l~ 108 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASK-RGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLG-ADKVSINTAALE 108 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcc-cCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhc
Confidence 35678999999999999987543221 123456678888999999999999999 899999999887 999999999999
Q ss_pred CCcHHHHHHhC
Q 015862 352 NPDLPRRFELN 362 (399)
Q Consensus 352 dPdl~~k~~~g 362 (399)
||++++++.+.
T Consensus 109 ~~~~~~~~~~~ 119 (232)
T TIGR03572 109 NPDLIEEAARR 119 (232)
T ss_pred CHHHHHHHHHH
Confidence 99999998874
No 115
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.05 E-value=0.00013 Score=69.32 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHH-----HHHHHHHHHhCCCce--EEE
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFAL-----EIVEAVSNEIGADRV--GIR 255 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~-----eii~avR~~vg~~~v--~vr 255 (399)
++|.+.++...++ +|+|||+..| +|-..| |..+++...-++ +++++||+.+.- |+ .++
T Consensus 18 ~~~~~~~~~l~~~-ad~iElgip~-----------sdp~ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~-Pl~lM~y 82 (244)
T PRK13125 18 ESFKEFIIGLVEL-VDILELGIPP-----------KYPKYD--GPVIRKSHRKVKGLDIWPLLEEVRKDVSV-PIILMTY 82 (244)
T ss_pred HHHHHHHHHHHhh-CCEEEECCCC-----------CCCCCC--CHHHHHHHHHHHHcCcHHHHHHHhccCCC-CEEEEEe
Confidence 5677777777777 9999999765 555555 666777766666 899999987632 43 456
Q ss_pred ecCCcc----c----CCCC------C---CChHHHHHHHHHhhhhhCceEEEEeCCCccc-------------c------
Q 015862 256 LSPFAN----Y----MESG------D---SNPEALGLYMAESLNKYGILYCHMVEPRMKT-------------R------ 299 (399)
Q Consensus 256 ls~~~~----~----~~~~------~---~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~-------------~------ 299 (399)
+|+.-. + ...+ . .+..++..++.+.+.+.|++.+-+..+.... .
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~ 162 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRP 162 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCC
Confidence 665210 0 0000 0 0112444556666666676655443331100 0
Q ss_pred cccCC----CchhhHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 300 EEKSE----CPHSLLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 300 ~~~~~----~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
..... ..+.++++|+..+ .|+++.||+ +++++.++++.| +|.|.+|.+++.
T Consensus 163 ~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g-aD~vvvGSai~~ 219 (244)
T PRK13125 163 ATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG-ADGVVVGTAFIE 219 (244)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 00000 1234667788774 789999999 999999999998 999999999985
No 116
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.04 E-value=6.8e-05 Score=78.27 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
..+-+..+.++|.|.|-|.++||. .....+.|+.||+..+.-.|.+. +.
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g~------------------------~~~~~~~i~~ik~~~p~~~vi~g-~v------ 297 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQGD------------------------SIYQLEMIKYIKKTYPELDVIGG-NV------ 297 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC------------------------cHHHHHHHHHHHHhCCCCcEEEe-cC------
Confidence 346677778899999999998852 23457899999998753233321 11
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEe--CCCcccc-c---ccCC---CchhhHHHHhhcCCcEEEeCCC-CHHHHHHH
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMV--EPRMKTR-E---EKSE---CPHSLLPMRKAFKGTFLVAGGY-DREDGNKA 334 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~-~---~~~~---~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~ 334 (399)
.+.+ -++.+.++|+|.|-+. .+..... . ...+ ....+..+.+.+++|||+-||| ++.++.++
T Consensus 298 ----~t~e----~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kA 369 (505)
T PLN02274 298 ----VTMY----QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKA 369 (505)
T ss_pred ----CCHH----HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHH
Confidence 1233 3556677999999764 2221111 0 0111 1223556667788999999999 99999999
Q ss_pred HHcCCCcEEEechHHhhCCcHHHH--HHhCCCCC
Q 015862 335 IAEGRADLVVYGRLFLANPDLPRR--FELNAPLN 366 (399)
Q Consensus 335 L~~G~~D~V~~gR~~iadPdl~~k--~~~g~~~~ 366 (399)
|+.| +|.|++|..|..-.+-|-. .++|+.++
T Consensus 370 la~G-A~~V~vGs~~~~t~Esp~~~~~~~g~~~k 402 (505)
T PLN02274 370 LTLG-ASTVMMGSFLAGTTEAPGEYFYQDGVRVK 402 (505)
T ss_pred HHcC-CCEEEEchhhcccccCCcceeeeCCeEEE
Confidence 9999 9999999999876554433 24555543
No 117
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=98.03 E-value=6.2e-05 Score=77.41 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=85.5
Q ss_pred HHHHHHHHHH-hCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCccc
Q 015862 185 FRLAARNAIE-AGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANY 262 (399)
Q Consensus 185 f~~aA~~a~~-aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~ 262 (399)
+++.|+...+ .||..++|+.|.. + ...-.+.|++||+++ ++ .|.|..|.
T Consensus 184 ~~~~a~~~~~~~Gf~a~KiKvG~~---------------~---------~~~Di~~v~avRea~-~d~~L~vDAN~---- 234 (441)
T TIGR03247 184 VVRLAEAAYDRYGFRDFKLKGGVL---------------R---------GEEEIEAVTALAKRF-PQARITLDPNG---- 234 (441)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCC---------------C---------hHHHHHHHHHHHHhC-CCCeEEEECCC----
Confidence 4445555554 5999999986541 0 023378999999998 44 45555543
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRAD 341 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 341 (399)
..+.++++++++.|++. +.|++ +|.... ......+..+.+++.+++||++...+ +++++..+++.+.+|
T Consensus 235 -----~wt~~~Ai~~~~~Le~~-~~~iE--ePv~~~--d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avd 304 (441)
T TIGR03247 235 -----AWSLDEAIALCKDLKGV-LAYAE--DPCGAE--QGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVD 304 (441)
T ss_pred -----CCCHHHHHHHHHHhhhh-hceEe--CCCCcc--cccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCC
Confidence 23577899999999998 88877 542110 00011456778999999999887777 899999999999999
Q ss_pred EEEe
Q 015862 342 LVVY 345 (399)
Q Consensus 342 ~V~~ 345 (399)
++.+
T Consensus 305 i~~~ 308 (441)
T TIGR03247 305 IPLA 308 (441)
T ss_pred EEec
Confidence 8543
No 118
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.01 E-value=9.9e-05 Score=70.34 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.+-++.-..... ...++++.++.+++.+++||+++||+ |++++.++++...||.|++|+++...
T Consensus 155 ~~~~~~~~~~~g~~~ii~~~i~~~g~-~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 155 AVEWAKEVEELGAGEILLTSMDRDGT-KNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCC-CCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 46678888999999887754221111 12235778889999999999999999 89999999986349999999998865
No 119
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.01 E-value=0.0002 Score=68.56 Aligned_cols=140 Identities=18% Similarity=0.102 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-C-ceEEEecCCcccC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA-D-RVGIRLSPFANYM 263 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~-~-~v~vrls~~~~~~ 263 (399)
...++.|.+.|+|+|++..-.| .+ +..+++ +.+.+|++.+.. . ++.|.+-+. ..
T Consensus 93 ~~~v~~al~~Ga~~v~~~~~~g-------------------~~--~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~--Gv 148 (258)
T TIGR01949 93 VTTVEDAIRMGADAVSIHVNVG-------------------SD--TEWEQI-RDLGMIAEICDDWGVPLLAMMYPR--GP 148 (258)
T ss_pred eeeHHHHHHCCCCEEEEEEecC-------------------Cc--hHHHHH-HHHHHHHHHHHHcCCCEEEEEecc--Cc
Confidence 4556778999999999875432 11 112233 677777777642 2 555533221 11
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCC-------HHHHHHHHH
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYD-------REDGNKAIA 336 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit-------~~~a~~~L~ 336 (399)
..+. .+.+...+.++...+.|+|||-++ +. ...+.++.+.+..++||++.||++ .+.+.++++
T Consensus 149 h~~~-~~~~~~~~~~~~a~~~GADyikt~---~~------~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~ 218 (258)
T TIGR01949 149 HIDD-RDPELVAHAARLGAELGADIVKTP---YT------GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAME 218 (258)
T ss_pred cccc-ccHHHHHHHHHHHHHHCCCEEecc---CC------CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1111 223444445677788999999864 11 134567777777889999999995 555667778
Q ss_pred cCCCcEEEechHHhhCCcHHHHHH
Q 015862 337 EGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 337 ~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
.| ++.|+++|.++..+|....++
T Consensus 219 aG-a~Gia~g~~i~~~~dp~~~~~ 241 (258)
T TIGR01949 219 AG-AAGVAVGRNIFQHDDPVGITK 241 (258)
T ss_pred cC-CcEEehhhHhhcCCCHHHHHH
Confidence 88 999999999999998554443
No 120
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.01 E-value=2.5e-05 Score=73.21 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=72.3
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.+++..-... ......+.+.++.+++.+++||++.||+ +.++++++++.| ||.|.+|+.++.+
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vilg~~~l~~ 109 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAG-VSRVIIGTAAVKN 109 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEECchHHhC
Confidence 566889999999999998753211 1123356778888999999999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|++..++.+.
T Consensus 110 ~~~l~ei~~~ 119 (233)
T PRK00748 110 PELVKEACKK 119 (233)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 121
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.99 E-value=0.00035 Score=65.60 Aligned_cols=132 Identities=20% Similarity=0.172 Sum_probs=90.6
Q ss_pred HHHHHHHHHHh-CCCEE--EEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 185 FRLAARNAIEA-GFDGV--ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 185 f~~aA~~a~~a-GfDgV--eIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
=+..|+.|+|+ |-|-| ||+...-||+. -+.+.|++.++.+.+.+..+=+..
T Consensus 78 Av~~a~lare~~~~~~iKlEVi~d~~~llp-----------------------d~~~tv~aa~~L~~~Gf~vlpyc~--- 131 (250)
T PRK00208 78 AVRTARLAREALGTNWIKLEVIGDDKTLLP-----------------------DPIETLKAAEILVKEGFVVLPYCT--- 131 (250)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCc-----------------------CHHHHHHHHHHHHHCCCEEEEEeC---
Confidence 47778888885 56666 55544333322 247888999888866544332222
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
+ ...+++.|++.|++++-......+. .....+.+.++.+++..++|||+.||| |++++.++++-| +
T Consensus 132 ------~-----d~~~ak~l~~~G~~~vmPlg~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelG-A 198 (250)
T PRK00208 132 ------D-----DPVLAKRLEEAGCAAVMPLGAPIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELG-A 198 (250)
T ss_pred ------C-----CHHHHHHHHHcCCCEeCCCCcCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC-C
Confidence 1 1347888999999998321111221 112234677889999888999999999 999999999999 9
Q ss_pred cEEEechHHhh--CCcH
Q 015862 341 DLVVYGRLFLA--NPDL 355 (399)
Q Consensus 341 D~V~~gR~~ia--dPdl 355 (399)
|.|.++.+... ||..
T Consensus 199 dgVlV~SAItka~dP~~ 215 (250)
T PRK00208 199 DAVLLNTAIAVAGDPVA 215 (250)
T ss_pred CEEEEChHhhCCCCHHH
Confidence 99999999986 3544
No 122
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.99 E-value=0.00015 Score=67.23 Aligned_cols=131 Identities=16% Similarity=0.066 Sum_probs=92.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+..++.|.+.|+|.|++..-.|+|.+ ++.+...+-+.+|+++++.-++.|-+-..
T Consensus 73 ~~E~~~Av~~GAdEiDvv~n~g~l~~-------------------g~~~~v~~ei~~i~~~~~g~~lKvIlE~~------ 127 (211)
T TIGR00126 73 LYETKEAIKYGADEVDMVINIGALKD-------------------GNEEVVYDDIRAVVEACAGVLLKVIIETG------ 127 (211)
T ss_pred HHHHHHHHHcCCCEEEeecchHhhhC-------------------CcHHHHHHHHHHHHHHcCCCeEEEEEecC------
Confidence 44456789999999999877665443 23456677888888888633555533221
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
..+.++....++...+.|+|||-.+.+.. ......+.++.+++.++ ++|-+.||+ |.+++.++++.| +|-
T Consensus 128 --~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aG-a~r 200 (211)
T TIGR00126 128 --LLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAG-ASR 200 (211)
T ss_pred --CCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHh-hHH
Confidence 12335566788888999999999765522 12234556666777764 789999999 999999999998 988
Q ss_pred EEechH
Q 015862 343 VVYGRL 348 (399)
Q Consensus 343 V~~gR~ 348 (399)
++...+
T Consensus 201 iGts~~ 206 (211)
T TIGR00126 201 IGASAG 206 (211)
T ss_pred hCcchH
Confidence 887654
No 123
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=97.98 E-value=0.00013 Score=74.06 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=86.4
Q ss_pred HHHHHHHHHHH-hCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 184 DFRLAARNAIE-AGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 184 ~f~~aA~~a~~-aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
++++.|+.+++ .||..++|+.+.. + .+.-.+.|++||++++ + .|.|..|.
T Consensus 171 ~~~~~a~~~~~~~Gf~~~KiKvG~~--------------------~----~~~di~~v~avRea~~-~~~l~vDaN~--- 222 (395)
T cd03323 171 GVVRLARAAIDRYGFKSFKLKGGVL--------------------P----GEEEIEAVKALAEAFP-GARLRLDPNG--- 222 (395)
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCC--------------------C----HHHHHHHHHHHHHhCC-CCcEEEeCCC---
Confidence 34555666654 6999999996531 0 1234789999999995 4 45554443
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.++++++++.|++ ++.|++ +|. . .....+.+++.+++||++...+ +.+++.++++.+.+
T Consensus 223 ------~w~~~~A~~~~~~l~~-~l~~iE--eP~-----~---d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~av 285 (395)
T cd03323 223 ------AWSLETAIRLAKELEG-VLAYLE--DPC-----G---GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAV 285 (395)
T ss_pred ------CcCHHHHHHHHHhcCc-CCCEEE--CCC-----C---CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCC
Confidence 3357889999999999 998887 442 1 4567778999999999887777 89999999999999
Q ss_pred cEEE
Q 015862 341 DLVV 344 (399)
Q Consensus 341 D~V~ 344 (399)
|++-
T Consensus 286 dil~ 289 (395)
T cd03323 286 DIPL 289 (395)
T ss_pred cEEe
Confidence 9874
No 124
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.98 E-value=4.4e-05 Score=79.08 Aligned_cols=144 Identities=21% Similarity=0.143 Sum_probs=97.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceE
Q 015862 174 RTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVG 253 (399)
Q Consensus 174 t~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~ 253 (399)
+.+....+-++..+-+....++|.|.|-|.++|| |.+.+.+.|++||+..++-+|.
T Consensus 215 ~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g------------------------~~~~~~~~i~~i~~~~~~~~vi 270 (475)
T TIGR01303 215 RIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHG------------------------HQVKMISAIKAVRALDLGVPIV 270 (475)
T ss_pred eehheeeeCccHHHHHHHHHHhCCCEEEEeCCCC------------------------CcHHHHHHHHHHHHHCCCCeEE
Confidence 3344444445666777778889999999999995 3467899999999987543555
Q ss_pred EEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCC---cccc-c--ccCCCc----hhhHHHHhhcCCcEEEe
Q 015862 254 IRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPR---MKTR-E--EKSECP----HSLLPMRKAFKGTFLVA 323 (399)
Q Consensus 254 vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~---~~~~-~--~~~~~~----~~~~~ir~~~~~pvi~~ 323 (399)
+ .+ -.+. +-++.|.++|+|+|.|..+. +... . ...+.. +.++.+++ .++|||+.
T Consensus 271 ~---g~--------~~t~----~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viad 334 (475)
T TIGR01303 271 A---GN--------VVSA----EGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWAD 334 (475)
T ss_pred E---ec--------cCCH----HHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEe
Confidence 4 11 1123 34566778999999865432 1111 1 111222 22333344 48999999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHH
Q 015862 324 GGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 324 Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
||| ++.++.++|..| +|.||+|+.|..--+-|-.
T Consensus 335 Ggi~~~~di~kala~G-A~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 335 GGVRHPRDVALALAAG-ASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred CCCCCHHHHHHHHHcC-CCEEeechhhcccccCCCc
Confidence 999 899999999999 9999999998765554444
No 125
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.98 E-value=7.8e-05 Score=71.44 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
.+.++.+.+.||+.++|+.+. . ++ ..-.+.|++||+++|++ .+.+..|.
T Consensus 87 ~~~~~~~~~~Gf~~~KiKvg~---------------~-----~~----~~d~~~v~~vr~~~g~~~~l~vDaN~------ 136 (263)
T cd03320 87 LGEAKAAYGGGYRTVKLKVGA---------------T-----SF----EEDLARLRALREALPADAKLRLDANG------ 136 (263)
T ss_pred HHHHHHHHhCCCCEEEEEECC---------------C-----Ch----HHHHHHHHHHHHHcCCCCeEEEeCCC------
Confidence 345666778899999998652 0 01 22378899999999875 35555443
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
..+.++++++++.|++.++.|++ +|.. ....+..+.++ .++||.+...+ +++++..+++.+.+|+|
T Consensus 137 ---~w~~~~A~~~~~~l~~~~i~~iE--qP~~------~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v 203 (263)
T cd03320 137 ---GWSLEEALAFLEALAAGRIEYIE--QPLP------PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGAL 203 (263)
T ss_pred ---CCCHHHHHHHHHhhcccCCceEE--CCCC------hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEE
Confidence 23567899999999999999988 5421 11233445555 68999998887 89999999999999988
Q ss_pred Ee
Q 015862 344 VY 345 (399)
Q Consensus 344 ~~ 345 (399)
.+
T Consensus 204 ~~ 205 (263)
T cd03320 204 VL 205 (263)
T ss_pred EE
Confidence 65
No 126
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.97 E-value=0.00084 Score=65.05 Aligned_cols=139 Identities=18% Similarity=0.185 Sum_probs=90.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCC---ccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPF---ANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~---~~~ 262 (399)
.+..++|.++||+.|.|-+.+ -+++...+...++++-.+.. |- .|...++.. ++.
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~--------------------l~~~eni~~t~~v~~~a~~~-gv-~Ve~ElG~~gg~ed~ 144 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSH--------------------LPFEENLALTKKVVEIAHAK-GV-SVEAELGTLGGIEDG 144 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEeeCCCcCcccc
Confidence 345566778899998887655 14566677777777777653 32 344444331 111
Q ss_pred -CC-CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccc--cCCCchhhHHHHhhcCCcEEEeC--CCCHHHHHHHHH
Q 015862 263 -ME-SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREE--KSECPHSLLPMRKAFKGTFLVAG--GYDREDGNKAIA 336 (399)
Q Consensus 263 -~~-~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~--~~~~~~~~~~ir~~~~~pvi~~G--git~~~a~~~L~ 336 (399)
.+ .....+.+++.++. ++.|+|||-++-+.....+. .....+.++.|++.+++|+++-| |++.++..++++
T Consensus 145 ~~g~~~~~t~~eea~~f~---~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~ 221 (282)
T TIGR01859 145 VDEKEAELADPDEAEQFV---KETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIK 221 (282)
T ss_pred ccccccccCCHHHHHHHH---HHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH
Confidence 00 00122445444444 34699999986554322222 22345678899999999999999 889999999999
Q ss_pred cCCCcEEEechHHh
Q 015862 337 EGRADLVVYGRLFL 350 (399)
Q Consensus 337 ~G~~D~V~~gR~~i 350 (399)
.| ++-|-++..+.
T Consensus 222 ~G-i~kiNv~T~l~ 234 (282)
T TIGR01859 222 LG-IAKINIDTDCR 234 (282)
T ss_pred cC-CCEEEECcHHH
Confidence 98 99999998775
No 127
>PRK06801 hypothetical protein; Provisional
Probab=97.96 E-value=0.0014 Score=63.50 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE---ecCCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR---LSPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr---ls~~~~~ 262 (399)
.+.+.+|.++||+.|.+-+.+ -+++...+..+++++..+.. |- .|-.- +...++.
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~--------------------l~~eeNi~~t~~v~~~a~~~-gv-~VE~ElG~vgg~e~~ 144 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGST--------------------LEYEENVRQTREVVKMCHAV-GV-SVEAELGAVGGDEGG 144 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEeecCcccCCCCC
Confidence 344668888999999987543 14677888889998888764 32 22222 2221111
Q ss_pred -C-CC-C--CCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc--CCCchhhHHHHhhcCCcEEEeCC--CCHHHHHH
Q 015862 263 -M-ES-G--DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK--SECPHSLLPMRKAFKGTFLVAGG--YDREDGNK 333 (399)
Q Consensus 263 -~-~~-~--~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~ 333 (399)
. +. + .....+++.+++ ++.|+|+|-++-++....+.. ....+.++.+++.+++|++.-|+ ++.+++.+
T Consensus 145 v~~~~~~~~~~T~pe~a~~f~---~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~ 221 (286)
T PRK06801 145 ALYGEADSAKFTDPQLARDFV---DRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRR 221 (286)
T ss_pred cccCCcccccCCCHHHHHHHH---HHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 0 00 0 011334444444 357999999865554333322 23556788899999999888887 78999999
Q ss_pred HHHcCCCcEEEechHHhh
Q 015862 334 AIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 334 ~L~~G~~D~V~~gR~~ia 351 (399)
+++.| ++-|-+++.+..
T Consensus 222 ~i~~G-i~KINv~T~~~~ 238 (286)
T PRK06801 222 AIELG-IHKINFYTGMSQ 238 (286)
T ss_pred HHHcC-CcEEEehhHHHH
Confidence 99999 999999988765
No 128
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.95 E-value=0.00038 Score=64.03 Aligned_cols=130 Identities=22% Similarity=0.223 Sum_probs=85.0
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEe-cCCcccCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRL-SPFANYMESG 266 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrl-s~~~~~~~~~ 266 (399)
.++.+.++|+|.|=+|+..+ ...+.++++.+|+. |- ++++-+ ++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------------------~~~~~~~i~~~~~~-g~-~~~~~~~~~-------- 112 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------------------DATIKGAVKAAKKH-GK-EVQVDLINV-------- 112 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc-CC-EEEEEecCC--------
Confidence 45678899999999996531 02346788888774 32 566653 33
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc-EEEeCCCCHHHHHHHHHcCCCcEEEe
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT-FLVAGGYDREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~~a~~~L~~G~~D~V~~ 345 (399)
..+.+ .++.+.+.|+|++.+..+...+. ......+.++.+++.++.+ +.+.||++++.+.++++.| +|.|.+
T Consensus 113 -~t~~~----~~~~~~~~g~d~v~~~pg~~~~~-~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~G-a~~v~v 185 (206)
T TIGR03128 113 -KDKVK----RAKELKELGADYIGVHTGLDEQA-KGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLG-PDIVIV 185 (206)
T ss_pred -CChHH----HHHHHHHcCCCEEEEcCCcCccc-CCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcC-CCEEEE
Confidence 11223 23334556999998743221111 1122344567777777644 5568999999999999998 999999
Q ss_pred chHHhhCCcHHHHH
Q 015862 346 GRLFLANPDLPRRF 359 (399)
Q Consensus 346 gR~~iadPdl~~k~ 359 (399)
||+++..++.-+.+
T Consensus 186 Gsai~~~~d~~~~~ 199 (206)
T TIGR03128 186 GGAITKAADPAEAA 199 (206)
T ss_pred eehhcCCCCHHHHH
Confidence 99999877754443
No 129
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.95 E-value=0.00012 Score=75.97 Aligned_cols=147 Identities=22% Similarity=0.161 Sum_probs=102.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCce
Q 015862 173 LRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 173 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v 252 (399)
++.+....+-++..+.+....++|.|.|-|.++||+ .+.+.+.|+.||+..++-+|
T Consensus 216 l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~------------------------~~~~~~~i~~ik~~~p~~~v 271 (479)
T PRK07807 216 LRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGH------------------------QEKMLEALRAVRALDPGVPI 271 (479)
T ss_pred cchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCc------------------------cHHHHHHHHHHHHHCCCCeE
Confidence 334444444456677788888999999999999973 25679999999999864333
Q ss_pred EEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCC---ccc-cc--ccCCCchhhHHHHh---hcCCcEEEe
Q 015862 253 GIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPR---MKT-RE--EKSECPHSLLPMRK---AFKGTFLVA 323 (399)
Q Consensus 253 ~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~---~~~-~~--~~~~~~~~~~~ir~---~~~~pvi~~ 323 (399)
.. . .-.+ .+-++.|.++|+|+|-|.-+. +.. .+ ...+....+..+.+ .+++|||+-
T Consensus 272 ~a---g--------nv~t----~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 272 VA---G--------NVVT----AEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred Ee---e--------ccCC----HHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec
Confidence 32 1 1112 334556667999998754322 111 11 12234444444444 468999999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHH
Q 015862 324 GGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 324 Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~ 359 (399)
||+ ++.++.++|..| +|.|++|..|..-.+-|-.+
T Consensus 337 ggi~~~~~~~~al~~g-a~~v~~g~~~ag~~Espg~~ 372 (479)
T PRK07807 337 GGVRHPRDVALALAAG-ASNVMIGSWFAGTYESPGDL 372 (479)
T ss_pred CCCCCHHHHHHHHHcC-CCeeeccHhhccCccCCCce
Confidence 999 899999999998 99999999999888776654
No 130
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.93 E-value=0.00018 Score=71.82 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+++.+.|+.+++.||..++|+.+. ..-.+.|++||+++| + .|.+..|.
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv~~---------------------------~~d~~~l~~vr~~~g-~~~l~lDaN~--- 187 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKIKP---------------------------GWDVEPLKAVRERFP-DIPLMADANS--- 187 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCh---------------------------HHHHHHHHHHHHHCC-CCeEEEECCC---
Confidence 445677777888999999998631 012678999999998 4 35554443
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
..+.+++. +++.|++.++.|++ +|. ....+...+.+++.+++||++...+ +++++..+++.+.+
T Consensus 188 ------~~~~~~a~-~~~~l~~~~i~~iE--eP~------~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~ 252 (354)
T cd03317 188 ------AYTLADIP-LLKRLDEYGLLMIE--QPL------AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGAC 252 (354)
T ss_pred ------CCCHHHHH-HHHHhhcCCccEEE--CCC------ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCC
Confidence 22345554 78999999999888 552 1123456678999999999888887 89999999999989
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|+|-+
T Consensus 253 d~~~i 257 (354)
T cd03317 253 KIINI 257 (354)
T ss_pred CEEEe
Confidence 98855
No 131
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.92 E-value=4e-05 Score=72.59 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=72.6
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+.+.|++.+|+..-... .....+.+.++.|.+.+.+||.+.||+ |.++++.+|..| ||-|.+|-.++.|
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~G-a~kvviGs~~l~~ 110 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATG-CARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchHhCC
Confidence 455888898999999998754321 234456678899999999999999999 999999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|+++.++.+-
T Consensus 111 p~l~~~i~~~ 120 (241)
T PRK14024 111 PEWCARVIAE 120 (241)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 132
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.92 E-value=0.00016 Score=67.88 Aligned_cols=132 Identities=17% Similarity=0.266 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEccc--cchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCC
Q 015862 183 NDFRLAARNAIEAGFDGVELHGA--HGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPF 259 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~--~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~ 259 (399)
++|.+ .+.++|+|+|=+|.+ + ...+.+.++.+|+. . .+++=+++.
T Consensus 78 ~d~~~---~~~~~gad~v~vH~~q~~--------------------------~d~~~~~~~~i~~~---g~~iGls~~~~ 125 (229)
T PLN02334 78 EDYVP---DFAKAGASIFTFHIEQAS--------------------------TIHLHRLIQQIKSA---GMKAGVVLNPG 125 (229)
T ss_pred HHHHH---HHHHcCCCEEEEeecccc--------------------------chhHHHHHHHHHHC---CCeEEEEECCC
Confidence 45544 347789999999976 2 01234555666543 3 467666541
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhh-CceEEEEeC--CCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHH
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKY-GILYCHMVE--PRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAI 335 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~-Gvd~l~v~~--~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L 335 (399)
.+.+ .++.+.+. |+||+-+.. ++.+.....+...+.++.+++.. +.|+.+.||+|++.+.+++
T Consensus 126 ---------t~~~----~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~ 192 (229)
T PLN02334 126 ---------TPVE----AVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAA 192 (229)
T ss_pred ---------CCHH----HHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHH
Confidence 1222 23333344 389885421 11111101111223456676664 4789999999999999999
Q ss_pred HcCCCcEEEechHHhhCCcHHHHHH
Q 015862 336 AEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 336 ~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
+.| +|+|.+|++++..+|+...++
T Consensus 193 ~aG-ad~vvvgsai~~~~d~~~~~~ 216 (229)
T PLN02334 193 EAG-ANVIVAGSAVFGAPDYAEVIS 216 (229)
T ss_pred HcC-CCEEEEChHHhCCCCHHHHHH
Confidence 999 999999999998888655544
No 133
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.92 E-value=0.00037 Score=65.54 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-C-ceEEEecCCccc
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA-D-RVGIRLSPFANY 262 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~-~-~v~vrls~~~~~ 262 (399)
+...++.|.++|+|+|.+..--+ .. . .+...+.+.++++.+.. . ++.+-.....
T Consensus 78 ~~~~v~~a~~~Ga~~v~~~~~~~--------------~~------~--~~~~~~~i~~v~~~~~~~g~~~iie~~~~g-- 133 (235)
T cd00958 78 LVASVEDAVRLGADAVGVTVYVG--------------SE------E--EREMLEELARVAAEAHKYGLPLIAWMYPRG-- 133 (235)
T ss_pred hhcCHHHHHHCCCCEEEEEEecC--------------Cc------h--HHHHHHHHHHHHHHHHHcCCCEEEEEeccC--
Confidence 34556778999999996553221 00 0 12334445555544421 2 4444322210
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC---CHHH----HHHHH
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY---DRED----GNKAI 335 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi---t~~~----a~~~L 335 (399)
...+...+.++....++...+.|+|||-+..+ ...+.++.+.+..++||++.||+ |+++ +..++
T Consensus 134 ~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~---------~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~ 204 (235)
T cd00958 134 PAVKNEKDPDLIAYAARIGAELGADIVKTKYT---------GDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAM 204 (235)
T ss_pred CcccCccCHHHHHHHHHHHHHHCCCEEEecCC---------CCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00111112233333466677889999987311 13567788888889999888885 4544 77888
Q ss_pred HcCCCcEEEechHHhhCCcHHHHHH
Q 015862 336 AEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 336 ~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
+.| ++.|++||.++..||....++
T Consensus 205 ~~G-a~gv~vg~~i~~~~dp~~~~~ 228 (235)
T cd00958 205 EAG-AAGVAVGRNIFQRPDPVAMLR 228 (235)
T ss_pred HcC-CcEEEechhhhcCCCHHHHHH
Confidence 888 999999999999998665554
No 134
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.91 E-value=0.00014 Score=75.82 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
++.+-|+.+.++|.|.|+|-.+||+ .+..++.|+.+|+..+.. +.|...-
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~------------------------~~~~~~~i~~ir~~~~~~-~~V~aGn----- 291 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGY------------------------SEWQKRTLDWIREKYGDS-VKVGAGN----- 291 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccc------------------------cHHHHHHHHHHHHhCCCC-ceEEecc-----
Confidence 3456666788899999999988863 234589999999988632 3332211
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCC---cc---cccccCCCchhhHHHHhh-------cC--CcEEEeCCC-C
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPR---MK---TREEKSECPHSLLPMRKA-------FK--GTFLVAGGY-D 327 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~---~~---~~~~~~~~~~~~~~ir~~-------~~--~pvi~~Ggi-t 327 (399)
-.+. +-++.|.++|+|+|-|.-+. +. ......+....+..+.++ .+ +|||+-||+ +
T Consensus 292 ----V~t~----e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~ 363 (502)
T PRK07107 292 ----VVDR----EGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVY 363 (502)
T ss_pred ----ccCH----HHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCc
Confidence 1122 34555667899998774321 11 111223333333333333 24 899999999 8
Q ss_pred HHHHHHHHHcCCCcEEEechHHhhCCcHH
Q 015862 328 REDGNKAIAEGRADLVVYGRLFLANPDLP 356 (399)
Q Consensus 328 ~~~a~~~L~~G~~D~V~~gR~~iadPdl~ 356 (399)
.-+..++|.-| +|.||+||.|..--+-|
T Consensus 364 ~gdi~KAla~G-A~~vm~G~~~ag~~esp 391 (502)
T PRK07107 364 DYHMTLALAMG-ADFIMLGRYFARFDESP 391 (502)
T ss_pred hhHHHHHHHcC-CCeeeeChhhhccccCC
Confidence 99999999999 99999999987654433
No 135
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.89 E-value=0.00012 Score=66.78 Aligned_cols=136 Identities=19% Similarity=0.185 Sum_probs=94.6
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~ 269 (399)
..|++||+|.|||- + .+.|... |-.++ .+-++++.++.|+-.+.-+++|-+-. -.
T Consensus 75 ~~aV~AGAdliEIG--N---fDsFY~q---------Gr~f~--a~eVL~Lt~~tR~LLP~~~LsVTVPH---------iL 129 (242)
T PF04481_consen 75 VAAVKAGADLIEIG--N---FDSFYAQ---------GRRFS--AEEVLALTRETRSLLPDITLSVTVPH---------IL 129 (242)
T ss_pred HHHHHhCCCEEEec--c---hHHHHhc---------CCeec--HHHHHHHHHHHHHhCCCCceEEecCc---------cc
Confidence 45688999999974 2 1333311 11122 34578899999999975578876642 34
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCccccccc---------CCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCC
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEK---------SECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRA 340 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~---------~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~ 340 (399)
+.++=.+++..|++.|+|+|.-..++-..+... .+.+-.+-.|.+++++||++..|++.-.+--++..| +
T Consensus 130 ~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaG-A 208 (242)
T PF04481_consen 130 PLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAG-A 208 (242)
T ss_pred cHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcC-C
Confidence 567778999999999999998644433222111 111223456889999999999999888888889998 8
Q ss_pred cEEEechHHhh
Q 015862 341 DLVVYGRLFLA 351 (399)
Q Consensus 341 D~V~~gR~~ia 351 (399)
..|++|.+.-.
T Consensus 209 sGVGVGSavn~ 219 (242)
T PF04481_consen 209 SGVGVGSAVNR 219 (242)
T ss_pred cccchhHHhhh
Confidence 89999987643
No 136
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.88 E-value=0.00019 Score=69.10 Aligned_cols=141 Identities=19% Similarity=0.148 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-C-ceEEEecCCccc
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA-D-RVGIRLSPFANY 262 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~-~-~v~vrls~~~~~ 262 (399)
+...++.|.+.|.|+|++..-.| .+ .+ +-..+.+.+|++.+.. . ++.+=..+ +.
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g--------------~~-----~~---~~~~~~~~~v~~~~~~~g~pl~vi~~~--~g 150 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVG--------------SE-----TE---AEMLEDLGEVAEECEEWGMPLLAMMYP--RG 150 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecC--------------Ch-----hH---HHHHHHHHHHHHHHHHcCCcEEEEEec--CC
Confidence 45566788999999999874332 11 01 2245556666666531 1 43331111 11
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCC---HHHHHH----HH
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYD---REDGNK----AI 335 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit---~~~a~~----~L 335 (399)
.......+.+.....++...+.|+|||-.+ +. .....++.+.+..++||++.||++ .+++.+ ++
T Consensus 151 ~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---~~------~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~ 221 (267)
T PRK07226 151 PGIKNEYDPEVVAHAARVAAELGADIVKTN---YT------GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAM 221 (267)
T ss_pred CccCCCccHHHHHHHHHHHHHHCCCEEeeC---CC------CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111111233444556677778999999754 11 123556666666689999999994 444444 45
Q ss_pred HcCCCcEEEechHHhhCCcHHHHH
Q 015862 336 AEGRADLVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 336 ~~G~~D~V~~gR~~iadPdl~~k~ 359 (399)
+.| ++.++++|.++..||....+
T Consensus 222 ~aG-A~Gis~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 222 EAG-AAGVAVGRNVFQHEDPEAIT 244 (267)
T ss_pred HcC-CcEEehhhhhhcCCCHHHHH
Confidence 887 99999999999999854443
No 137
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.88 E-value=0.00027 Score=72.55 Aligned_cols=128 Identities=24% Similarity=0.278 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCcccCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANYMESG 266 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~~~~~ 266 (399)
-+..|.++|.|+|-+|+... + ..+.++++.+|+ .|. .+.+- +++.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~----------------------~---~~~~~~i~~a~~-~G~-~~~~g~~s~~------- 118 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLAD----------------------D---STIEDAVRAARK-YGV-RLMADLINVP------- 118 (430)
T ss_pred HHHHHHHcCCCEEEEecCCC----------------------h---HHHHHHHHHHHH-cCC-EEEEEecCCC-------
Confidence 44567899999999884320 0 113567777777 343 33332 4441
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
.+. +.++.+.+.|+||+.++.+...+. ......+.++.+++.+++||++.||++.+.+.++++.| +|.|.+|
T Consensus 119 --t~~----e~~~~a~~~GaD~I~~~pg~~~~~-~~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aG-Adgv~vG 190 (430)
T PRK07028 119 --DPV----KRAVELEELGVDYINVHVGIDQQM-LGKDPLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAG-ADIVIVG 190 (430)
T ss_pred --CHH----HHHHHHHhcCCCEEEEEeccchhh-cCCChHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcC-CCEEEEC
Confidence 122 235566678999997753221111 11122457788888888999999999999999999999 9999999
Q ss_pred hHHhhCCcHHH
Q 015862 347 RLFLANPDLPR 357 (399)
Q Consensus 347 R~~iadPdl~~ 357 (399)
|.++..+++..
T Consensus 191 saI~~~~d~~~ 201 (430)
T PRK07028 191 GNIIKSADVTE 201 (430)
T ss_pred hHHcCCCCHHH
Confidence 99999888643
No 138
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.87 E-value=0.0011 Score=61.53 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=58.2
Q ss_pred hhhhhCceEEEEeCCCcccc-cc---cCCCchhhHHHHhh-cCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 280 SLNKYGILYCHMVEPRMKTR-EE---KSECPHSLLPMRKA-FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 280 ~Le~~Gvd~l~v~~~~~~~~-~~---~~~~~~~~~~ir~~-~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
..++.|+||+-++. .+... .. .+..++.++.+.+. .++||++-||++++++.++++.| +|+|++-++++..+|
T Consensus 117 ~A~~~gaDYi~lgp-vf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~G-a~GiAvisai~~~~d 194 (211)
T PRK03512 117 VALAARPSYIALGH-VFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATG-VGSIAVVSAITQAAD 194 (211)
T ss_pred HHhhcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEhhHhhCCCC
Confidence 34567999998753 23211 11 11223445556555 57999999999999999999998 999999999999888
Q ss_pred HHHHHH
Q 015862 355 LPRRFE 360 (399)
Q Consensus 355 l~~k~~ 360 (399)
+.+.++
T Consensus 195 ~~~~~~ 200 (211)
T PRK03512 195 WRAATA 200 (211)
T ss_pred HHHHHH
Confidence 776665
No 139
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.87 E-value=0.00033 Score=64.54 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+..++.|.+.|+|.|++..--|++.+. ......+-+.+|++++..-++.+-+-.
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~~-------------------~~~~~~~ei~~v~~~~~g~~lkvI~e~------- 125 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKSG-------------------DYEAVYEEIAAVVEACGGAPLKVILET------- 125 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhCC-------------------CHHHHHHHHHHHHHhcCCCeEEEEEec-------
Confidence 444677889999999999776644332 234567778888888862255442222
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
...+.++....++...+.|+|||-.+.+.. ......+.++.+++.+ ++||.+.||+ |.+++.++++.| +|-
T Consensus 126 -~~l~~~~i~~a~ria~e~GaD~IKTsTG~~----~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g-~~r 199 (203)
T cd00959 126 -GLLTDEEIIKACEIAIEAGADFIKTSTGFG----PGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAG-ATR 199 (203)
T ss_pred -CCCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhC-hhh
Confidence 122345667788888999999999764421 1223445556666665 4789999999 999999999998 887
Q ss_pred EEe
Q 015862 343 VVY 345 (399)
Q Consensus 343 V~~ 345 (399)
++.
T Consensus 200 iG~ 202 (203)
T cd00959 200 IGT 202 (203)
T ss_pred ccC
Confidence 664
No 140
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=97.87 E-value=0.00021 Score=70.76 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=84.0
Q ss_pred hCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHH
Q 015862 195 AGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEAL 273 (399)
Q Consensus 195 aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~ 273 (399)
.||..++|+.|.. |.++ +--.+.|++||+++|++ .|.+..|. ..+.++
T Consensus 101 ~G~~~~KvKVg~~------------------~~~~----~~Di~rv~avRe~lGpd~~LrvDAN~---------~ws~~~ 149 (327)
T PRK02901 101 PGCRTAKVKVAEP------------------GQTL----ADDVARVNAVRDALGPDGRVRVDANG---------GWSVDE 149 (327)
T ss_pred CCCCEEEEEECCC------------------CCCH----HHHHHHHHHHHHhcCCCCEEEEECCC---------CCCHHH
Confidence 5999999997631 2233 23478899999999976 34554442 346788
Q ss_pred HHHHHHhh-hhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 274 GLYMAESL-NKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 274 ~~~l~~~L-e~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
++++++.| ++.++.|++ +|. ...+..+.+++.+++||.+...+ +.++...+++.+.+|++.+
T Consensus 150 Ai~~~~~L~e~~~l~~iE--qP~--------~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 150 AVAAARALDADGPLEYVE--QPC--------ATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred HHHHHHHhhhccCceEEe--cCC--------CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 99999999 778999988 442 12456778999999999888888 8999999999999998865
No 141
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.84 E-value=0.00069 Score=64.75 Aligned_cols=141 Identities=18% Similarity=0.055 Sum_probs=91.4
Q ss_pred CCCCChhHHHHHHH------------HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHH
Q 015862 170 PRRLRTDEIPQIVN------------DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFAL 237 (399)
Q Consensus 170 p~~mt~~eI~~ii~------------~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~ 237 (399)
.|.=+.++|.+|.+ .|..-|....++|.|.|+ +. .|.|-+-
T Consensus 51 ~R~~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiID---eT------------------------e~lrPad 103 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYID---ES------------------------EVLTPAD 103 (287)
T ss_pred eecCCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEE---cc------------------------CCCCcHH
Confidence 45556677777654 577888999999999996 21 1222356
Q ss_pred HHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc-------------------
Q 015862 238 EIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT------------------- 298 (399)
Q Consensus 238 eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~------------------- 298 (399)
+.+..+|+..+ -++..-.+ ++++++.- .+.|+|+|-.+.-.+..
T Consensus 104 e~~~~~K~~f~-vpfmad~~------------~l~EAlra----i~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 104 WTFHIDKKKFK-VPFVCGAR------------DLGEALRR----INEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred HHHHHHHHHcC-CCEEccCC------------CHHHHHHH----HHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHH
Confidence 77777777652 23332221 23443322 24577776543111100
Q ss_pred ------------ccccCCCchhhHHHHhhcCCcEE--EeCCC-CHHHHHHHHHcCCCcEEEechHHhh--CCcH
Q 015862 299 ------------REEKSECPHSLLPMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRLFLA--NPDL 355 (399)
Q Consensus 299 ------------~~~~~~~~~~~~~ir~~~~~pvi--~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia--dPdl 355 (399)
.....+..+.++.+++..++||+ +.||| ||+++..+++.| ||.|++|++++. ||..
T Consensus 167 ~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG-AdGVaVGSaI~ks~dP~~ 239 (287)
T TIGR00343 167 QNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSNPEK 239 (287)
T ss_pred hcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC-CCEEEEhHHhhcCCCHHH
Confidence 00012345678888888899998 99999 999999999998 999999999996 5543
No 142
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=97.84 E-value=0.00036 Score=68.48 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=82.9
Q ss_pred HhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHH
Q 015862 194 EAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEA 272 (399)
Q Consensus 194 ~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~ 272 (399)
+.||..++|+.|.+ + .+.-.+.|++||+++|++ .|.+..|. ..+.+
T Consensus 122 ~~Gf~~~KiKvG~~--------------------~----~~~d~~~v~~vr~~~g~~~~l~vDaN~---------~w~~~ 168 (307)
T TIGR01927 122 AEGFRTFKWKVGVG--------------------E----LAREGMLVNLLLEALPDKAELRLDANG---------GLSPD 168 (307)
T ss_pred hCCCCEEEEEeCCC--------------------C----hHHHHHHHHHHHHHcCCCCeEEEeCCC---------CCCHH
Confidence 67999999986531 1 123378999999999864 34444442 33567
Q ss_pred HHHHHHHhhhh---hCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 273 LGLYMAESLNK---YGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 273 ~~~~l~~~Le~---~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
++.++++.|++ .+++||+ +|. +..+..+.+++.+++||++...+ +++++..+++.+.+|+|.+
T Consensus 169 ~A~~~~~~l~~~~~~~i~~iE--qP~--------~~~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 169 EAQQFLKALDPNLRGRIAFLE--EPL--------PDADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred HHHHHHHhcccccCCCceEEe--CCC--------CCHHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 89999999997 7898888 542 11156777999999999988888 8999999999998998765
No 143
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.84 E-value=7.3e-05 Score=70.56 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=70.5
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+.+.|++++|+..-... ......+...++.+.+.+++|++++||+ |.++++.+++.| ||.|.+|..++.|
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~G-a~~v~iGs~~~~~ 111 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLG-VDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcC-CCEEEEChHHhhC
Confidence 455788888899999997643211 1122345667788888889999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|+++.++.+-
T Consensus 112 ~~~~~~i~~~ 121 (241)
T PRK13585 112 PEIVRELSEE 121 (241)
T ss_pred hHHHHHHHHH
Confidence 9999998876
No 144
>PLN02979 glycolate oxidase
Probab=97.81 E-value=0.0003 Score=69.90 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF 316 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~ 316 (399)
-+-|+.+|+..+ -||.||--. +.+ -++.+.+.|+|.|.|+...-.+....++....+.++++++
T Consensus 212 W~dl~wlr~~~~-~PvivKgV~-----------~~~----dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~ 275 (366)
T PLN02979 212 WKDVQWLQTITK-LPILVKGVL-----------TGE----DARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKAT 275 (366)
T ss_pred HHHHHHHHhccC-CCEEeecCC-----------CHH----HHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHh
Confidence 477889998774 377776432 122 3556778899999987542222211222344566677776
Q ss_pred C--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 317 K--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 317 ~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+ +||++.||| +..|+.++|.-| +|+|++||+++.
T Consensus 276 ~~~~~Vi~dGGIr~G~Di~KALALG-AdaV~iGrp~L~ 312 (366)
T PLN02979 276 QGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 312 (366)
T ss_pred CCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 4 899999999 899999999999 999999999984
No 145
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.80 E-value=0.00076 Score=64.47 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchh---hh-------hHHHHHHHHHHHHH-hCCCc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLE---NR-------CRFALEIVEAVSNE-IGADR 251 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGsle---nR-------~r~~~eii~avR~~-vg~~~ 251 (399)
+.+.+.++...++|+|.|||-... ++---| |-.+. +| .+-+++++++||+. .. -|
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPf-----------sDP~aD--GpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~-~p 89 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPF-----------SDPLAD--GPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN-IP 89 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC-----------CCCCCc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC
Confidence 446777788889999999987643 322222 32221 12 14578899999876 32 23
Q ss_pred --eEEEecCC-----cccC------CC----CCCChHHHHHHHHHhhhhhCceEEEEeCCCccc----------c---c-
Q 015862 252 --VGIRLSPF-----ANYM------ES----GDSNPEALGLYMAESLNKYGILYCHMVEPRMKT----------R---E- 300 (399)
Q Consensus 252 --v~vrls~~-----~~~~------~~----~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~----------~---~- 300 (399)
+..-.|+. +.+. +. -.+.+.++..++.+.+.+.|++.+-+..+..+. . +
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYL 169 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 22233330 1110 11 114466777778888888888877554442210 0 0
Q ss_pred ------cc------CCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 301 ------EK------SECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 301 ------~~------~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
.. ....+.++.+|+.++.||++.+|+ |++++.++++.| +|.|.+|.+++.
T Consensus 170 vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVvGSaiv~ 232 (256)
T TIGR00262 170 VSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIVGSAIVK 232 (256)
T ss_pred EECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 00 112346788999889999999999 799999999998 999999999874
No 146
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.79 E-value=0.00054 Score=68.12 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=70.5
Q ss_pred HHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc---ccccCCCchhhHHHHhh
Q 015862 240 VEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT---REEKSECPHSLLPMRKA 315 (399)
Q Consensus 240 i~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~---~~~~~~~~~~~~~ir~~ 315 (399)
+...|+..|++ .|++-.+ +.++ + ....+.|+||+-++ +.+.. +...+..++.++.+++.
T Consensus 230 ~~~aR~llg~~~iIG~S~H------------s~~e---~-~~A~~~GaDYI~lG-Pvf~T~tKp~~~~~Gle~l~~~~~~ 292 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTT------------NPEE---M-AKAIAEGADYIGVG-PVFPTPTKPGKAPAGLEYLKYAAKE 292 (347)
T ss_pred HHHHHHhcCCCCEEEEecC------------CHHH---H-HHHHHcCCCEEEEC-CCcCCCCCCCCCCCCHHHHHHHHHh
Confidence 34557777776 4665332 2233 2 23335699999875 33321 11123345678888888
Q ss_pred cCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHH
Q 015862 316 FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 316 ~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~ 359 (399)
+++||++.|||+++.+.++++.| +|+|+++++++..+|....+
T Consensus 293 ~~iPv~AiGGI~~~ni~~l~~~G-a~gVAvisaI~~a~dp~~~~ 335 (347)
T PRK02615 293 APIPWFAIGGIDKSNIPEVLQAG-AKRVAVVRAIMGAEDPKQAT 335 (347)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC-CcEEEEeHHHhCCCCHHHHH
Confidence 89999999999999999999998 99999999999877654443
No 147
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.79 E-value=0.0027 Score=57.15 Aligned_cols=83 Identities=16% Similarity=0.065 Sum_probs=60.8
Q ss_pred HHhhhhhCceEEEEeCCCcc--cccc-cCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 278 AESLNKYGILYCHMVEPRMK--TREE-KSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 278 ~~~Le~~Gvd~l~v~~~~~~--~~~~-~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
+....+.|+|++.++..... .... ....++.++.+++..++||++.||++.+++.++++.| +|+|++|++++.+++
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~G-a~~i~~g~~i~~~~~ 186 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAG-ADGVAVISAITGADD 186 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhcCCC
Confidence 33455678999987432111 1111 2234567777887788999999999999999999998 999999999999888
Q ss_pred HHHHHHh
Q 015862 355 LPRRFEL 361 (399)
Q Consensus 355 l~~k~~~ 361 (399)
....+++
T Consensus 187 ~~~~~~~ 193 (196)
T cd00564 187 PAAAARE 193 (196)
T ss_pred HHHHHHH
Confidence 7766653
No 148
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.78 E-value=0.00059 Score=64.68 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhh----------HHHHHHHHHHHHHhCCC-c
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRC----------RFALEIVEAVSNEIGAD-R 251 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~----------r~~~eii~avR~~vg~~-~ 251 (399)
+.+.+.++...++|.|.+||.. |.++---| |-.++|-. ++..++++++|+.+... .
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~i-----------PfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~ 80 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGI-----------PFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV 80 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEE
Confidence 5678889999999999999983 22222223 33444433 58899999999986322 2
Q ss_pred eEEEecCC-----cccC------CC----CCCChHHHHHHHHHhhhhhCceEEEEeCCCccc----------c-------
Q 015862 252 VGIRLSPF-----ANYM------ES----GDSNPEALGLYMAESLNKYGILYCHMVEPRMKT----------R------- 299 (399)
Q Consensus 252 v~vrls~~-----~~~~------~~----~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~----------~------- 299 (399)
+.+.+++. +.+. +. -.+.+.++...+.+.+.+.|++.+-+..+.... .
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS 160 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEe
Confidence 34466651 1110 00 012245666677777888888777654432110 0
Q ss_pred ---ccc------CCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 300 ---EEK------SECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 300 ---~~~------~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
... ....+.++.+|+..+.||++.||+ +++++.++++. +|.|.+|.+++
T Consensus 161 ~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv 219 (242)
T cd04724 161 RTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALV 219 (242)
T ss_pred CCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHH
Confidence 000 111245678888888999999999 69899997766 99999998876
No 149
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.78 E-value=0.00017 Score=72.19 Aligned_cols=100 Identities=21% Similarity=0.144 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 235 FALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 235 ~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+.-+-|+.+|+.++ -||.||=-. +.+ -++.+.+.|+++|.|+...-.+.....+..+.+..+++
T Consensus 212 ~~w~~i~~~~~~~~-~pvivKgv~-----------~~~----da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~ 275 (356)
T PF01070_consen 212 LTWDDIEWIRKQWK-LPVIVKGVL-----------SPE----DAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRA 275 (356)
T ss_dssp -SHHHHHHHHHHCS-SEEEEEEE------------SHH----HHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHH
T ss_pred CCHHHHHHHhcccC-CceEEEecc-----------cHH----HHHHHHhcCCCEEEecCCCcccCccccccccccHHHHh
Confidence 55677999999874 377776432 123 25567789999999974321122223334556778888
Q ss_pred hcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 315 AFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 315 ~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+++ +||++.||+ +..|+.++|.-| +|+|++||+++.
T Consensus 276 ~~~~~~~i~~dgGir~g~Dv~kalaLG-A~~v~igr~~l~ 314 (356)
T PF01070_consen 276 AVGDDIPIIADGGIRRGLDVAKALALG-ADAVGIGRPFLY 314 (356)
T ss_dssp HHTTSSEEEEESS--SHHHHHHHHHTT--SEEEESHHHHH
T ss_pred hhcCCeeEEEeCCCCCHHHHHHHHHcC-CCeEEEccHHHH
Confidence 775 899999999 999999999999 999999999875
No 150
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.77 E-value=0.0012 Score=63.26 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=87.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCccc--
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANY-- 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~-- 262 (399)
++-|+.+.++|+++|-+. +..+.|||+ .+.+++||+.+.- ||..| +-.....
T Consensus 73 ~~~A~~~~~~GA~aisvl----------------te~~~f~g~--------~~~l~~v~~~v~i-Pvl~kdfi~~~~qi~ 127 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVL----------------TDERFFQGS--------LEYLRAARAAVSL-PVLRKDFIIDPYQIY 127 (260)
T ss_pred HHHHHHHHhCCCeEEEEe----------------cccccCCCC--------HHHHHHHHHhcCC-CEEeeeecCCHHHHH
Confidence 677788889999999544 556678888 5677888887632 55542 1110000
Q ss_pred ----CC-----C-CCCChHHHHHHHHHhhhhh--------------------CceEEEEeCCCcccccccCCCchhhHHH
Q 015862 263 ----ME-----S-GDSNPEALGLYMAESLNKY--------------------GILYCHMVEPRMKTREEKSECPHSLLPM 312 (399)
Q Consensus 263 ----~~-----~-~~~~~~~~~~~l~~~Le~~--------------------Gvd~l~v~~~~~~~~~~~~~~~~~~~~i 312 (399)
.| . ....+.++..++.+...+. |+|++-++...... .....+....+
T Consensus 128 ~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~---~~~d~~~~~~l 204 (260)
T PRK00278 128 EARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKT---FEVDLETTERL 204 (260)
T ss_pred HHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCccc---ccCCHHHHHHH
Confidence 00 0 0011122233333333333 44444433221110 11123445566
Q ss_pred HhhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 313 RKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 313 r~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
.+.++ .++|+.||+ |++++..+++.| +|.|.+|++++..+|..+.++
T Consensus 205 ~~~~p~~~~vIaegGI~t~ed~~~~~~~G-ad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 205 APLIPSDRLVVSESGIFTPEDLKRLAKAG-ADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred HHhCCCCCEEEEEeCCCCHHHHHHHHHcC-CCEEEECHHHcCCCCHHHHHH
Confidence 66664 488999998 899999999998 999999999999998766554
No 151
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00074 Score=62.06 Aligned_cols=134 Identities=28% Similarity=0.223 Sum_probs=93.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
.--|+.|.++|+|.+=|-|+- + ..-|.++++.+-.-. .+.+.+-..
T Consensus 70 ~~e~~ma~~aGAd~~tV~g~A---------~-------------------~~TI~~~i~~A~~~~~~v~iDl~~~----- 116 (217)
T COG0269 70 AIEARMAFEAGADWVTVLGAA---------D-------------------DATIKKAIKVAKEYGKEVQIDLIGV----- 116 (217)
T ss_pred HHHHHHHHHcCCCEEEEEecC---------C-------------------HHHHHHHHHHHHHcCCeEEEEeecC-----
Confidence 445788999999999998765 1 122333333332111 355544221
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCCCHHHHHHHHHcCCCcE
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGYDREDGNKAIAEGRADL 342 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggit~~~a~~~L~~G~~D~ 342 (399)
. + ....++.|++.|+|++.+|.+.-.+.....+.++.+..+|+..+ ..|.+.||++++++..++..| +|.
T Consensus 117 ---~-~---~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~-~~i 188 (217)
T COG0269 117 ---W-D---PEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIG-ADI 188 (217)
T ss_pred ---C-C---HHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCC-CCE
Confidence 1 2 23467778889999999998865443333233567888988876 579999999999999999998 999
Q ss_pred EEechHHhhCCcHHHHHH
Q 015862 343 VVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 343 V~~gR~~iadPdl~~k~~ 360 (399)
|.+||++....|-.+.++
T Consensus 189 vIvGraIt~a~dp~~~a~ 206 (217)
T COG0269 189 VIVGRAITGAKDPAEAAR 206 (217)
T ss_pred EEECchhcCCCCHHHHHH
Confidence 999999998887655444
No 152
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=97.76 E-value=0.00045 Score=68.31 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
++++.|++.++.||..++|+.+ + .. -.+++++||+++++-.|.+..|.
T Consensus 135 ~~~~~a~~~~~~Gf~~~KiKv~----------~----~~-------------d~~~v~~vr~~~~~~~l~vDaN~----- 182 (324)
T TIGR01928 135 QMLKQIESLKATGYKRIKLKIT----------P----QI-------------MHQLVKLRRLRFPQIPLVIDANE----- 182 (324)
T ss_pred HHHHHHHHHHHcCCcEEEEEeC----------C----ch-------------hHHHHHHHHHhCCCCcEEEECCC-----
Confidence 4566667777889999999852 1 11 15789999999952134444432
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
..+.+++ ..++.|++.++.|++ +|.. .......+.+++.+++||++...+ ++.++..+++.+.+|+
T Consensus 183 ----~~~~~~a-~~~~~l~~~~~~~iE--eP~~------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dv 249 (324)
T TIGR01928 183 ----SYDLQDF-PRLKELDRYQLLYIE--EPFK------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKV 249 (324)
T ss_pred ----CCCHHHH-HHHHHHhhCCCcEEE--CCCC------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCE
Confidence 1233444 568999999999988 5521 123456788999999999988887 8999999999999998
Q ss_pred EEe
Q 015862 343 VVY 345 (399)
Q Consensus 343 V~~ 345 (399)
+-+
T Consensus 250 i~~ 252 (324)
T TIGR01928 250 INI 252 (324)
T ss_pred EEe
Confidence 864
No 153
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.75 E-value=9.5e-05 Score=68.20 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=68.9
Q ss_pred HHHHHHhhhhhCceEE---EEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH
Q 015862 274 GLYMAESLNKYGILYC---HMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l---~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
-.++++...+.|+|-+ +|++.. .......++++++.+.+-+|+.++||| |.+++.++|..| +|=|++..++
T Consensus 32 pVelA~~Y~e~GADElvFlDItAs~----~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aG-ADKVSINsaA 106 (256)
T COG0107 32 PVELAKRYNEEGADELVFLDITASS----EGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAG-ADKVSINSAA 106 (256)
T ss_pred hHHHHHHHHHcCCCeEEEEeccccc----ccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcC-CCeeeeChhH
Confidence 3568889999997754 444332 123345678888888899999999999 999999999999 9999999999
Q ss_pred hhCCcHHHHHHh
Q 015862 350 LANPDLPRRFEL 361 (399)
Q Consensus 350 iadPdl~~k~~~ 361 (399)
+.||+|..++.+
T Consensus 107 v~~p~lI~~~a~ 118 (256)
T COG0107 107 VKDPELITEAAD 118 (256)
T ss_pred hcChHHHHHHHH
Confidence 999999999876
No 154
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.74 E-value=0.0008 Score=60.76 Aligned_cols=129 Identities=19% Similarity=0.171 Sum_probs=81.0
Q ss_pred CChhHHHHHHHHHHHHH-------------HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHH
Q 015862 173 LRTDEIPQIVNDFRLAA-------------RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEI 239 (399)
Q Consensus 173 mt~~eI~~ii~~f~~aA-------------~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~ei 239 (399)
++.+++.++++.+.+.+ ..|.+.|+|||-+.... . -
T Consensus 36 ~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~~~------------------------------~-~ 84 (180)
T PF02581_consen 36 LSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQSD------------------------------L-P 84 (180)
T ss_dssp S-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBTTS------------------------------S-S
T ss_pred CCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecccc------------------------------c-c
Confidence 56677766666655444 44677899998755321 0 0
Q ss_pred HHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc--ccccCCCchhhHHHHhhc
Q 015862 240 VEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT--REEKSECPHSLLPMRKAF 316 (399)
Q Consensus 240 i~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~--~~~~~~~~~~~~~ir~~~ 316 (399)
...+|+..+++ .|++-... .++ ++.+.+.|+||+-++.-..+. +...+..+..+..+++..
T Consensus 85 ~~~~r~~~~~~~~ig~S~h~------------~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~ 148 (180)
T PF02581_consen 85 PAEARKLLGPDKIIGASCHS------------LEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS 148 (180)
T ss_dssp HHHHHHHHTTTSEEEEEESS------------HHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT
T ss_pred hHHhhhhcccceEEEeecCc------------HHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC
Confidence 34456667766 57764432 232 445567899999986421111 112222355677888889
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHH
Q 015862 317 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 317 ~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
++||++-||+|++++.++++.| +|+|++-|++
T Consensus 149 ~~pv~AlGGI~~~~i~~l~~~G-a~gvAvi~aI 180 (180)
T PF02581_consen 149 PIPVYALGGITPENIPELREAG-ADGVAVISAI 180 (180)
T ss_dssp SSCEEEESS--TTTHHHHHHTT--SEEEESHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHcC-CCEEEEEeeC
Confidence 9999999999999999999998 9999998864
No 155
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.74 E-value=0.00026 Score=70.66 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--------ccCC
Q 015862 233 CRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--------EKSE 304 (399)
Q Consensus 233 ~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--------~~~~ 304 (399)
.+-+.+.|+.+|+..+..+|+||+... ...++ ++....++|+|+|+|....-+.-. ...|
T Consensus 187 ~edl~~~I~~Lr~~~~~~pVgvKl~~~---------~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP 254 (368)
T PF01645_consen 187 IEDLAQLIEELRELNPGKPVGVKLVAG---------RGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP 254 (368)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEEEE-S---------TTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEECCC---------CcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc
Confidence 345789999999998656999999873 22332 222266789999999754321100 1112
Q ss_pred CchhhHHHHhhc-------CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 305 CPHSLLPMRKAF-------KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 305 ~~~~~~~ir~~~-------~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
....+.++.+.+ .+.+++.|++ |+.++.++|.-| +|.|.+||+++-
T Consensus 255 ~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLG-AD~v~igt~~li 308 (368)
T PF01645_consen 255 TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALG-ADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT--SEEE-SHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcC-CCeeEecchhhh
Confidence 222233333322 3679999999 999999999999 999999999874
No 156
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.74 E-value=0.00097 Score=61.17 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=44.7
Q ss_pred hhHHHHhhcC-----CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 308 SLLPMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 308 ~~~~ir~~~~-----~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
.++.+|+.++ .|+++.||++++++.++++.| +|.|.+|++++..++....+++
T Consensus 152 ~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~g-ad~iivgsai~~~~~~~~~~~~ 209 (211)
T cd00429 152 KIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAG-ADVLVAGSALFGSDDYAEAIKE 209 (211)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhCCCCHHHHHHH
Confidence 4556666663 899999999999999999998 9999999999999997776653
No 157
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.74 E-value=0.0004 Score=68.05 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=89.1
Q ss_pred HHHHHHHHHH-hCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 185 FRLAARNAIE-AGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 185 f~~aA~~a~~-aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
|-........ +|.|.|-|..+||| .+...+.|+.||+..+.-+|.. .+
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh------------------------s~~~i~~ik~ik~~~P~~~vIa---GN---- 158 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY------------------------SEHFVQFVAKAREAWPDKTICA---GN---- 158 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHHhCCCCcEEE---ec----
Confidence 3344433332 79999999999974 3567999999999886433322 11
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCC--C-cccc---cccCCCchhh---HHHHhhcCCcEEEeCCC-CHHHHHH
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEP--R-MKTR---EEKSECPHSL---LPMRKAFKGTFLVAGGY-DREDGNK 333 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~--~-~~~~---~~~~~~~~~~---~~ir~~~~~pvi~~Ggi-t~~~a~~ 333 (399)
-- +.+.++.|.++|+|.+-|--+ + +... .-..+.+..+ ....+..++|||+-||+ ++-+..+
T Consensus 159 ----V~----T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~K 230 (346)
T PRK05096 159 ----VV----TGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAK 230 (346)
T ss_pred ----cc----CHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHH
Confidence 11 234667788899999876332 1 1111 1122333222 23334568999999999 7899999
Q ss_pred HHHcCCCcEEEechHHhhCCcHHHH
Q 015862 334 AIAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 334 ~L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
+|..| +|+||||..|...-+-|-+
T Consensus 231 AlaaG-Ad~VMlGsllAGt~EsPGe 254 (346)
T PRK05096 231 AFGGG-ADFVMLGGMLAGHEESGGE 254 (346)
T ss_pred HHHcC-CCEEEeChhhcCcccCCCc
Confidence 99998 9999999998876655544
No 158
>PLN02591 tryptophan synthase
Probab=97.73 E-value=0.0018 Score=61.62 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhh----------hHHHHHHHHHHHHHhCCCce
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENR----------CRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR----------~r~~~eii~avR~~vg~~~v 252 (399)
+.+.+.++...++|+|.|||-... ++---| |-.+.+. .+-++++++++|+... -|+
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPf-----------SDP~aD--GpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~-~p~ 81 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPY-----------SDPLAD--GPVIQAAATRALEKGTTLDSVISMLKEVAPQLS-CPI 81 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-----------CCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 456777788889999999987543 333333 3332222 2356888888886542 243
Q ss_pred EEEe--cC-----CcccC----CCC------CCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------c--
Q 015862 253 GIRL--SP-----FANYM----ESG------DSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------E-- 300 (399)
Q Consensus 253 ~vrl--s~-----~~~~~----~~~------~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~-- 300 (399)
.+-. |+ .+.|. ..+ -+.+.++..++.+.+.+.|++.|.+..++.... |
T Consensus 82 ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 82 VLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred EEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 2211 11 00010 011 145778888899999999999998876543210 0
Q ss_pred -----cc------CCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 301 -----EK------SECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 301 -----~~------~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
.. ....+.++.+|+..+.||+++-|+ |++++.++++.| +|.|.+|.+++.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G-ADGvIVGSalVk 223 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG-ADGVIVGSAMVK 223 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-CCEEEECHHHHH
Confidence 00 011245778999889999998899 799999999988 999999999974
No 159
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.71 E-value=0.00026 Score=70.65 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 235 FALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 235 ~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+.-+.|+.||+..+ .+|.+| .. .+.+ -++.+.+.|+|.|.++.....+.....+..+.+.++++
T Consensus 223 ~~w~~i~~ir~~~~-~pviiK-gV----------~~~e----da~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~ 286 (361)
T cd04736 223 FNWQDLRWLRDLWP-HKLLVK-GI----------VTAE----DAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVA 286 (361)
T ss_pred CCHHHHHHHHHhCC-CCEEEe-cC----------CCHH----HHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHH
Confidence 45688999999985 367665 22 1233 34556678999998875433332222334567778888
Q ss_pred hcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 315 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 315 ~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
++++||++.||| +..++.++|.-| +|+|++||+++
T Consensus 287 ~~~~~vi~dGGIr~g~Dv~KALaLG-A~aV~iGr~~l 322 (361)
T cd04736 287 ATYKPVLIDSGIRRGSDIVKALALG-ANAVLLGRATL 322 (361)
T ss_pred HhCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHH
Confidence 889999999999 899999999999 99999999998
No 160
>PLN02535 glycolate oxidase
Probab=97.68 E-value=0.00027 Score=70.60 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 235 FALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 235 ~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+.-+-|+.+|+..+ -||.||--. +.++ ++.+.+.|+|+|.++...-.+.....+....+..+++
T Consensus 210 ~tW~~i~~lr~~~~-~PvivKgV~-----------~~~d----A~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~ 273 (364)
T PLN02535 210 LSWKDIEWLRSITN-LPILIKGVL-----------TRED----AIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQ 273 (364)
T ss_pred CCHHHHHHHHhccC-CCEEEecCC-----------CHHH----HHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHH
Confidence 34578899998763 388887221 1222 5567789999998864321111111222456667777
Q ss_pred hc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 315 AF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 315 ~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
++ ++|||+.||| +..++.++|.-| +|+|++||+++..+.
T Consensus 274 av~~~ipVi~dGGIr~g~Dv~KALalG-A~aV~vGr~~l~~l~ 315 (364)
T PLN02535 274 AVGGRVPVLLDGGVRRGTDVFKALALG-AQAVLVGRPVIYGLA 315 (364)
T ss_pred HHhcCCCEEeeCCCCCHHHHHHHHHcC-CCEEEECHHHHhhhh
Confidence 76 5999999999 999999999999 999999999998665
No 161
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.68 E-value=0.0002 Score=67.86 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=69.1
Q ss_pred HHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC--
Q 015862 275 LYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLAN-- 352 (399)
Q Consensus 275 ~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iad-- 352 (399)
.++++.+++.|++++|+..- ... +.+.++.|.+.+++||..+||++.++++++|+.| +|-|.+|..++.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aG-a~rVvIGS~av~~~~ 112 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEG-ASHVIVTSWLFTKGK 112 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcC-CCEEEECcHHHhCCC
Confidence 56888999999999998744 223 6778889999999999999999559999999999 9999999999998
Q ss_pred --CcHHHHHHhC
Q 015862 353 --PDLPRRFELN 362 (399)
Q Consensus 353 --Pdl~~k~~~g 362 (399)
|++.+++.+-
T Consensus 113 i~~~~~~~i~~~ 124 (253)
T TIGR02129 113 FDLKRLKEIVSL 124 (253)
T ss_pred CCHHHHHHHHHH
Confidence 7788888763
No 162
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.67 E-value=0.00058 Score=71.26 Aligned_cols=131 Identities=21% Similarity=0.185 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++...++|.|.|-+.+.||.+ .-..+.++.+|+..++-+|.+.-
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~------------------------~~vl~~i~~i~~~~p~~~vi~g~--------- 276 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS------------------------EGVLDRVREIKAKYPDVQIIAGN--------- 276 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc------------------------hhHHHHHHHHHhhCCCCCEEEec---------
Confidence 677888889999999888877521 23578899999987433655511
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCc---ccc---cccCCCchhhHHHHhh---cCCcEEEeCCC-CHHHHHHHH
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRM---KTR---EEKSECPHSLLPMRKA---FKGTFLVAGGY-DREDGNKAI 335 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~---~~~---~~~~~~~~~~~~ir~~---~~~pvi~~Ggi-t~~~a~~~L 335 (399)
-.+.+ -++.|.++|+|+|.+.-+.. ... ....+....+..++++ .++|||+.||+ ++.++.++|
T Consensus 277 --v~t~e----~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAl 350 (486)
T PRK05567 277 --VATAE----AARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKAL 350 (486)
T ss_pred --cCCHH----HHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHH
Confidence 12333 35556678999998632211 000 1122334455555553 46899999999 999999999
Q ss_pred HcCCCcEEEechHHhhCCcHH
Q 015862 336 AEGRADLVVYGRLFLANPDLP 356 (399)
Q Consensus 336 ~~G~~D~V~~gR~~iadPdl~ 356 (399)
+-| ||.|++|..+..--+-|
T Consensus 351 a~G-A~~v~~G~~~a~~~e~p 370 (486)
T PRK05567 351 AAG-ASAVMLGSMLAGTEEAP 370 (486)
T ss_pred HhC-CCEEEECccccccccCC
Confidence 999 99999999887654433
No 163
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.66 E-value=0.00078 Score=67.75 Aligned_cols=97 Identities=20% Similarity=0.151 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-
Q 015862 238 EIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF- 316 (399)
Q Consensus 238 eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~- 316 (399)
+-|+.||+.++ -||.+|=-. +.+ -++.+.+.|+|.|.|+...-.+.....+....+..|++++
T Consensus 235 ~di~~lr~~~~-~pvivKgV~-----------s~~----dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~ 298 (381)
T PRK11197 235 KDLEWIRDFWD-GPMVIKGIL-----------DPE----DARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVK 298 (381)
T ss_pred HHHHHHHHhCC-CCEEEEecC-----------CHH----HHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhc
Confidence 44888888874 266654321 122 3556667899999886532111111122334566677766
Q ss_pred -CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 317 -KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 317 -~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
++||++.||| +..++.++|.-| +|+|++||+++.
T Consensus 299 ~~~~vi~dGGIr~g~Di~KALaLG-A~~V~iGr~~l~ 334 (381)
T PRK11197 299 GDITILADSGIRNGLDVVRMIALG-ADTVLLGRAFVY 334 (381)
T ss_pred CCCeEEeeCCcCcHHHHHHHHHcC-cCceeEhHHHHH
Confidence 4899999999 899999999999 999999999985
No 164
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.66 E-value=0.0024 Score=59.31 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGD 267 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~ 267 (399)
.+..+.++|+|+|-+...- + . ...+.++++..+. .|-+. .+-++.
T Consensus 86 ~v~~~~~~Gad~v~l~~~~-------~---------------~--~~~~~~~~~~~~~-~g~~~-~v~v~~--------- 130 (217)
T cd00331 86 QIYEARAAGADAVLLIVAA-------L---------------D--DEQLKELYELARE-LGMEV-LVEVHD--------- 130 (217)
T ss_pred HHHHHHHcCCCEEEEeecc-------C---------------C--HHHHHHHHHHHHH-cCCeE-EEEECC---------
Confidence 4678899999999865321 1 0 1344566665533 34322 222222
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEE
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVV 344 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 344 (399)
.++ ++.+.+.|++++-++...... .....+....+++.+ ++||++.||+ +++++.++++.| +|.|.
T Consensus 131 ---~~e----~~~~~~~g~~~i~~t~~~~~~---~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G-a~gvi 199 (217)
T cd00331 131 ---EEE----LERALALGAKIIGINNRDLKT---FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG-ADAVL 199 (217)
T ss_pred ---HHH----HHHHHHcCCCEEEEeCCCccc---cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC-CCEEE
Confidence 222 344556799999877432221 122346777888875 5899999999 899999999998 99999
Q ss_pred echHHhhCCcHHHHHH
Q 015862 345 YGRLFLANPDLPRRFE 360 (399)
Q Consensus 345 ~gR~~iadPdl~~k~~ 360 (399)
+|++++..++..+.++
T Consensus 200 vGsai~~~~~p~~~~~ 215 (217)
T cd00331 200 IGESLMRAPDPGAALR 215 (217)
T ss_pred ECHHHcCCCCHHHHHH
Confidence 9999998888766654
No 165
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.65 E-value=0.00019 Score=67.65 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=70.7
Q ss_pred HHHHHhhhh-hCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 275 LYMAESLNK-YGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 275 ~~l~~~Le~-~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
.++++.+.+ .|++.+|+..-.... .....+.+.++.|.+.+.+||.+.||+ |.++++++++.| ||-|.+|...+.|
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~G-a~kvvigt~a~~~ 111 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAG-INYCIVGTKGIQD 111 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCC-CCEEEECchHhcC
Confidence 347888888 689999986543211 133456778888988889999999999 999999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|++++++.+-
T Consensus 112 ~~~l~~~~~~ 121 (234)
T PRK13587 112 TDWLKEMAHT 121 (234)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 166
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.63 E-value=0.0019 Score=62.01 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhh----------hHHHHHHHHHHHHHhCCCce
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENR----------CRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR----------~r~~~eii~avR~~vg~~~v 252 (399)
+.+.+.++...++|+|.|||-... ++---| |-.+.+- .+-++++++++|+... -|+
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGiPf-----------SDP~aD--GpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~-~p~ 94 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGIPY-----------SDPLAD--GPIIQEASNRALKQGINLNKILSILSEVNGEIK-API 94 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-----------CCCCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 456777888899999999987543 333333 3222221 2356888999986532 243
Q ss_pred EEE--ecCC-----cccC---------CC-CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------c--
Q 015862 253 GIR--LSPF-----ANYM---------ES-GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------E-- 300 (399)
Q Consensus 253 ~vr--ls~~-----~~~~---------~~-~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~-- 300 (399)
.+- .|+. +.|. +. -.+.+.++..++.+.+.+.|++.+-+..|..... |
T Consensus 95 vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 95 VIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred EEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 221 1110 0000 00 1244667778888888888988887765542110 0
Q ss_pred -----ccC------CCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 301 -----EKS------ECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 301 -----~~~------~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
... ...+.++.+|+.++.|+++..|+ ++++++++.+.| +|.|.+|.+++
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G-ADGvVVGSalv 235 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN-INGIVIGSACV 235 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-CCEEEECHHHH
Confidence 000 01245778899899999999999 799999999988 99999999995
No 167
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.63 E-value=0.00083 Score=67.36 Aligned_cols=133 Identities=23% Similarity=0.151 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCC-CCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCccc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQY-GGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~y-GGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~ 262 (399)
.+.+-++.+.++|.|.|-||+- .|..+| +|+-+ . .++.+.+ +..+ -||.+ ..
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgr--------------t~~q~~~sg~~~--p---~~l~~~i-~~~~-IPVI~--G~---- 195 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGT--------------LVSAEHVSTSGE--P---LNLKEFI-GELD-VPVIA--GG---- 195 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEecc--------------chhhhccCCCCC--H---HHHHHHH-HHCC-CCEEE--eC----
Confidence 4667788889999999999943 244555 22211 2 2333333 3333 25543 11
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--c--cCCCchhhHHHH-------hhcC---CcEEEeCCC-C
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--E--KSECPHSLLPMR-------KAFK---GTFLVAGGY-D 327 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--~--~~~~~~~~~~ir-------~~~~---~pvi~~Ggi-t 327 (399)
-.+.++ +..+.+.|+|.|.+..+...... . ..+....+..+. +.+. +|||+.||| +
T Consensus 196 -----V~t~e~----A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t 266 (369)
T TIGR01304 196 -----VNDYTT----ALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET 266 (369)
T ss_pred -----CCCHHH----HHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 112333 33444589999875433211110 1 122222222222 1233 899999999 9
Q ss_pred HHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 328 REDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 328 ~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
..++.++|.-| +|.|++|++|+.--
T Consensus 267 g~di~kAlAlG-AdaV~iGt~~a~a~ 291 (369)
T TIGR01304 267 SGDLVKAIACG-ADAVVLGSPLARAA 291 (369)
T ss_pred HHHHHHHHHcC-CCEeeeHHHHHhhh
Confidence 99999999998 99999999998743
No 168
>PRK08185 hypothetical protein; Provisional
Probab=97.62 E-value=0.0073 Score=58.47 Aligned_cols=134 Identities=15% Similarity=0.165 Sum_probs=85.7
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ceEEEecCCcccCCC
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD---RVGIRLSPFANYMES 265 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~---~v~vrls~~~~~~~~ 265 (399)
.+.|.++||+.|.|-+.+ -++|...+...++++..+.. |-. .|+. ++..++....
T Consensus 84 i~~ai~~Gf~SVM~D~S~--------------------l~~eeNi~~t~~vv~~a~~~-gv~vE~ElG~-vg~~e~~~~~ 141 (283)
T PRK08185 84 VMRAIRCGFTSVMIDGSL--------------------LPYEENVALTKEVVELAHKV-GVSVEGELGT-IGNTGTSIEG 141 (283)
T ss_pred HHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEee-ccCccccccc
Confidence 456678899999988765 15788888999999888753 321 3454 4432221111
Q ss_pred CC----CChHHHHHHHHHhhhhhCceEEEEeCCCccccccc----CCCchhhHHHHhhcCCcEEEeCCC--CHHHHHHHH
Q 015862 266 GD----SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK----SECPHSLLPMRKAFKGTFLVAGGY--DREDGNKAI 335 (399)
Q Consensus 266 ~~----~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~----~~~~~~~~~ir~~~~~pvi~~Ggi--t~~~a~~~L 335 (399)
+. ..+.+++.++. ++.|+|++-++-++....+.. ....+.++.|++.+++|++.=|+. ..++..+++
T Consensus 142 ~~~~~~~t~peea~~f~---~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai 218 (283)
T PRK08185 142 GVSEIIYTDPEQAEDFV---SRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESV 218 (283)
T ss_pred ccccccCCCHHHHHHHH---HhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHH
Confidence 11 11344444443 456999999976664433322 224667889999999999888887 577889999
Q ss_pred HcCCCcEEEechH
Q 015862 336 AEGRADLVVYGRL 348 (399)
Q Consensus 336 ~~G~~D~V~~gR~ 348 (399)
+.|.+- |=++..
T Consensus 219 ~~GI~K-iNi~T~ 230 (283)
T PRK08185 219 QLGVGK-INISSD 230 (283)
T ss_pred HCCCeE-EEeChH
Confidence 999443 444443
No 169
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.61 E-value=0.0019 Score=60.75 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhC-------CCEE--EEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc-eEE
Q 015862 185 FRLAARNAIEAG-------FDGV--ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGI 254 (399)
Q Consensus 185 f~~aA~~a~~aG-------fDgV--eIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~-v~v 254 (399)
=+..|+.|+|++ -|-| ||++---||+ |- ..|.+++.+.-+.+.+ |.-
T Consensus 86 Av~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~Ll-----PD------------------~~etl~Aae~Lv~eGF~VlP 142 (267)
T CHL00162 86 AIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLL-----PD------------------PIGTLKAAEFLVKKGFTVLP 142 (267)
T ss_pred HHHHHHHHHHHhccccccCCCeEEEEEeCCCcccC-----CC------------------hHHHHHHHHHHHHCCCEEee
Confidence 477788888876 4444 6665444333 31 3789999999886544 332
Q ss_pred EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHH
Q 015862 255 RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNK 333 (399)
Q Consensus 255 rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~ 333 (399)
=++. + ..+|++|++.|+..+---..-.+. .....+.+.++.|++..++||+..+|| +++++..
T Consensus 143 Y~~~----------D-----~v~a~rLed~Gc~aVMPlgsPIGS-g~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~ 206 (267)
T CHL00162 143 YINA----------D-----PMLAKHLEDIGCATVMPLGSPIGS-GQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQ 206 (267)
T ss_pred cCCC----------C-----HHHHHHHHHcCCeEEeeccCcccC-CCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHH
Confidence 2221 1 358999999998876522111111 122346678999999999999999999 8999999
Q ss_pred HHHcCCCcEEEechHHhhCCcHHHH
Q 015862 334 AIAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 334 ~L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
+++-| +|.|.+..+...-+|.+.-
T Consensus 207 AmElG-aDgVL~nSaIakA~dP~~m 230 (267)
T CHL00162 207 AMELG-ASGVLLNTAVAQAKNPEQM 230 (267)
T ss_pred HHHcC-CCEEeecceeecCCCHHHH
Confidence 99999 9999999999987777443
No 170
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.61 E-value=0.00079 Score=67.59 Aligned_cols=139 Identities=20% Similarity=0.145 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
++.+-++.+.++|.|.|.||+ ++|...|+++-- +. .++++.+++ .+ -+|.. +.
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhg--------------rt~~~~h~~~~~-~~---~~i~~~ik~-~~-ipVIa--G~----- 194 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQG--------------TVVSAEHVSKEG-EP---LNLKEFIYE-LD-VPVIV--GG----- 194 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEec--------------cchhhhccCCcC-CH---HHHHHHHHH-CC-CCEEE--eC-----
Confidence 356777888899999999994 245556665421 12 334444444 32 24433 11
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCC---cccc-cc--cCCCchhhHHHHhh-------c---CCcEEEeCCC-
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPR---MKTR-EE--KSECPHSLLPMRKA-------F---KGTFLVAGGY- 326 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~---~~~~-~~--~~~~~~~~~~ir~~-------~---~~pvi~~Ggi- 326 (399)
-.+.+ .++.+.++|+|.|-+..+. +... .. ..+....+..+.++ + ++|||+.|||
T Consensus 195 ----V~t~e----~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~ 266 (368)
T PRK08649 195 ----CVTYT----TALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG 266 (368)
T ss_pred ----CCCHH----HHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC
Confidence 11223 3445556899999764221 1100 00 11222222222211 1 5899999999
Q ss_pred CHHHHHHHHHcCCCcEEEechHHhhCCcHHHH
Q 015862 327 DREDGNKAIAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 327 t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
+..++.++|.-| +|.|+||+.|..-.+-+-+
T Consensus 267 ~~~diakAlalG-Ad~Vm~Gs~fa~t~Espg~ 297 (368)
T PRK08649 267 TSGDIAKAIACG-ADAVMLGSPLARAAEAPGR 297 (368)
T ss_pred CHHHHHHHHHcC-CCeecccchhcccccCCCc
Confidence 899999999998 9999999999986664433
No 171
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.60 E-value=0.0018 Score=61.97 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhh--------h--hHHHHHHHHHHHHHhCCCce
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLEN--------R--CRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslen--------R--~r~~~eii~avR~~vg~~~v 252 (399)
+.+.+.++...+.|+|.|||-... ++---| |-.+.. - .+-++++++++|+.-..-|+
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPf-----------SDP~aD--GpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~ 92 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPF-----------SDPVAD--GPVIQAASLRALAAGVTLADVFELVREIREKDPTIPI 92 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-----------CCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 456778888899999999987543 333333 322222 1 23468888888844222253
Q ss_pred EEEe--cCC-----cccC----CCC------CCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------c--
Q 015862 253 GIRL--SPF-----ANYM----ESG------DSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------E-- 300 (399)
Q Consensus 253 ~vrl--s~~-----~~~~----~~~------~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~-- 300 (399)
.+-. |+. +.+. ..+ .+.+.++...+.+.+.+.|++.|-+..++.... |
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v 172 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV 172 (258)
T ss_pred EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 3322 210 0000 001 145677888888888999999887655443110 0
Q ss_pred -----cc------CCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 301 -----EK------SECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 301 -----~~------~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
.. ....+.++.+|+..++||++++|+ +++++.++++ . +|.|.+|.+++.
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv~ 233 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALVK 233 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHHH
Confidence 00 112346788999899999999999 8999999886 4 999999999873
No 172
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.60 E-value=0.0003 Score=67.36 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=71.9
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+.+.|++.+++..-.... ....++.+.++.+.+.+.+||++.||+ +.+++++++..| +|.|.++..++.+
T Consensus 32 p~~~a~~~~~~g~~~l~i~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G-~~~vvigs~~~~~ 109 (258)
T PRK01033 32 PINAVRIFNEKEVDELIVLDIDASK-RGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLG-VEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCc-CCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCC-CCEEEEChHHhcC
Confidence 5668999999999999986543211 123456778888988889999999999 899999999887 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|+++.++.+-
T Consensus 110 ~~~~~~~~~~ 119 (258)
T PRK01033 110 PDLITEAAER 119 (258)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 173
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.60 E-value=0.00012 Score=68.78 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=69.1
Q ss_pred HHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 275 LYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 275 ~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
.++++.+++.|++.+|+..-... ......+.+.++.+.+.+.+||.+.||+ +.++++++|+.| +|-|.++..++.||
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G-a~~Vvigt~~~~~~ 109 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAG-ADRVVIGTEALEDP 109 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT--SEEEESHHHHHCC
T ss_pred HHHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhC-CCEEEeChHHhhch
Confidence 44788888999999998642211 1122345678889999999999999999 999999999999 99999999999999
Q ss_pred cHHHHHHhC
Q 015862 354 DLPRRFELN 362 (399)
Q Consensus 354 dl~~k~~~g 362 (399)
++.+++.+.
T Consensus 110 ~~l~~~~~~ 118 (229)
T PF00977_consen 110 ELLEELAER 118 (229)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999998873
No 174
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.58 E-value=0.00031 Score=66.88 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=69.6
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC-
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLAN- 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iad- 352 (399)
..++|+.+++.|+.++|+..-.- ....+.+.++.|++ +++||-.+||+..++++++|+.| +|-|.+|..++.|
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~G-a~rViigT~Av~~~ 118 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAG-ASHVIVTSYVFRDG 118 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcC-CCEEEEchHHHhCC
Confidence 46689999999999999875421 23335667888888 88999999999559999999999 9999999999999
Q ss_pred ---CcHHHHHHhC
Q 015862 353 ---PDLPRRFELN 362 (399)
Q Consensus 353 ---Pdl~~k~~~g 362 (399)
|+|++++.+-
T Consensus 119 ~~~p~~v~~~~~~ 131 (262)
T PLN02446 119 QIDLERLKDLVRL 131 (262)
T ss_pred CCCHHHHHHHHHH
Confidence 9999998773
No 175
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.58 E-value=0.0011 Score=61.08 Aligned_cols=121 Identities=21% Similarity=0.122 Sum_probs=76.9
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDS 268 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~ 268 (399)
..|.+.|.|+|++|+.. ..+.++++|+..|.. ...+.++..
T Consensus 67 ~ia~~~~~d~Vqlhg~e-----------------------------~~~~~~~l~~~~~~~~i~~i~~~~~--------- 108 (203)
T cd00405 67 EIAEELGLDVVQLHGDE-----------------------------SPEYCAQLRARLGLPVIKAIRVKDE--------- 108 (203)
T ss_pred HHHHhcCCCEEEECCCC-----------------------------CHHHHHHHHhhcCCcEEEEEecCCh---------
Confidence 34667899999999532 035567788877644 223544431
Q ss_pred ChHHHHHHHHHhhhhhCceEEEEeCCCcccc--cccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 269 NPEALGLYMAESLNKYGILYCHMVEPRMKTR--EEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 269 ~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~--~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
.+ .++.+ ....++||+-+....-... ......++.++.++ .+.|+++.||+|++...++++.+.+|+|.+.
T Consensus 109 --~~--~~~~~-~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~ 181 (203)
T cd00405 109 --ED--LEKAA-AYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLVRPYGVDVS 181 (203)
T ss_pred --hh--HHHhh-hccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhcCCCEEEcC
Confidence 01 11122 2345789986543221111 11223444555554 5789999999999999999999889999999
Q ss_pred hHHhhCCcH
Q 015862 347 RLFLANPDL 355 (399)
Q Consensus 347 R~~iadPdl 355 (399)
+++...|-.
T Consensus 182 S~ie~~pg~ 190 (203)
T cd00405 182 SGVETSPGI 190 (203)
T ss_pred CcccCCCCC
Confidence 999877643
No 176
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.56 E-value=0.0063 Score=55.39 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=56.8
Q ss_pred hhhhhCceEEEEeCCCcccc-cc---cCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 280 SLNKYGILYCHMVEPRMKTR-EE---KSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 280 ~Le~~Gvd~l~v~~~~~~~~-~~---~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
...+.|+||+-++. .+... .. ....++.++.+++.. ++||++.||++++++.++++.| +|+|++++.++...|
T Consensus 111 ~a~~~g~dyi~~~~-v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G-~~gva~~~~i~~~~d 188 (196)
T TIGR00693 111 EAEAEGADYIGFGP-IFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAG-ADGVAVVSAIMQAAD 188 (196)
T ss_pred HHhHcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEhHHhhCCCC
Confidence 34567999988642 22211 11 112355677777665 4999999999999999999998 999999999998877
Q ss_pred HHHHHH
Q 015862 355 LPRRFE 360 (399)
Q Consensus 355 l~~k~~ 360 (399)
....++
T Consensus 189 p~~~~~ 194 (196)
T TIGR00693 189 PKAAAK 194 (196)
T ss_pred HHHHHH
Confidence 655544
No 177
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00024 Score=66.45 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=73.6
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..+.++.+++.|+.++|+..-.- .....+.+.+.+++|.+.+++||-.+||| |.++++.+|+.| ++.|.+|...+.|
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdg-A~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G-~~rViiGt~av~~ 110 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDG-AKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAG-VARVIIGTAAVKN 110 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeeccc-cccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCC-CCEEEEecceecC
Confidence 45678888899999999864321 11133446688999999999999999999 999999999998 9999999999999
Q ss_pred CcHHHHHHhCCC
Q 015862 353 PDLPRRFELNAP 364 (399)
Q Consensus 353 Pdl~~k~~~g~~ 364 (399)
|+|+.++.+--+
T Consensus 111 p~~v~~~~~~~g 122 (241)
T COG0106 111 PDLVKELCEEYG 122 (241)
T ss_pred HHHHHHHHHHcC
Confidence 999999987544
No 178
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.55 E-value=0.0021 Score=63.12 Aligned_cols=129 Identities=22% Similarity=0.240 Sum_probs=85.1
Q ss_pred HHHHHHh--CCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCC
Q 015862 189 ARNAIEA--GFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 266 (399)
Q Consensus 189 A~~a~~a--GfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~ 266 (399)
+....++ |.|.|-|..+||| .+..++.|+.||+..+. +..|.=|.
T Consensus 112 ~~~L~~a~~~~d~iviD~AhGh------------------------s~~~i~~ik~ir~~~p~-~~viaGNV-------- 158 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVANGY------------------------SEHFVEFVKLVREAFPE-HTIMAGNV-------- 158 (343)
T ss_pred HHHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHhhCCC-CeEEEecc--------
Confidence 3444555 6999999999974 35679999999998853 33333222
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCC--C-cccc---cccCCCchhhHHHHhh---cCCcEEEeCCC-CHHHHHHHHH
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEP--R-MKTR---EEKSECPHSLLPMRKA---FKGTFLVAGGY-DREDGNKAIA 336 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~--~-~~~~---~~~~~~~~~~~~ir~~---~~~pvi~~Ggi-t~~~a~~~L~ 336 (399)
.+.+ -++.|.++|+|.+-|.-+ + +... ....+....+..+.++ .++|||+-||+ +.-+..++|.
T Consensus 159 --~T~e----~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA 232 (343)
T TIGR01305 159 --VTGE----MVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG 232 (343)
T ss_pred --cCHH----HHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH
Confidence 1233 455677799999876522 1 1111 1122344444445444 36789999999 8999999999
Q ss_pred cCCCcEEEechHHhhCCcHHH
Q 015862 337 EGRADLVVYGRLFLANPDLPR 357 (399)
Q Consensus 337 ~G~~D~V~~gR~~iadPdl~~ 357 (399)
-| +|+||+|..+..-.+=|-
T Consensus 233 ~G-Ad~VMlG~llAG~~Espg 252 (343)
T TIGR01305 233 AG-ADFVMLGGMFAGHTESGG 252 (343)
T ss_pred cC-CCEEEECHhhhCcCcCcc
Confidence 99 999999955544443333
No 179
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.00025 Score=66.67 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=67.5
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+.+. ++.+++....- .......+.+.++.+.+.+++||++.||+ |.++++++++.| +|.|.+|+.++ |
T Consensus 32 p~~~a~~~~~~-~~~l~ivDldg-a~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G-~~~vivGtaa~-~ 107 (228)
T PRK04128 32 PVEIALRFSEY-VDKIHVVDLDG-AFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIG-VENVIIGTKAF-D 107 (228)
T ss_pred HHHHHHHHHHh-CCEEEEEECcc-hhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchhc-C
Confidence 45577778777 88888754321 11123356778888988899999999999 899999999998 99999999999 9
Q ss_pred CcHHHHHHh
Q 015862 353 PDLPRRFEL 361 (399)
Q Consensus 353 Pdl~~k~~~ 361 (399)
|+|.+++.+
T Consensus 108 ~~~l~~~~~ 116 (228)
T PRK04128 108 LEFLEKVTS 116 (228)
T ss_pred HHHHHHHHH
Confidence 999999876
No 180
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.55 E-value=0.0028 Score=64.05 Aligned_cols=127 Identities=24% Similarity=0.226 Sum_probs=85.1
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCcccCCCCC
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANYMESGD 267 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~~~~~~ 267 (399)
++.+.++|+|.+-+|+..+ ...+.+.++++|+. | -.+++. +++
T Consensus 243 v~~~a~aGAD~vTVH~ea~-------------------------~~ti~~ai~~akk~-G-ikvgVD~lnp--------- 286 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-------------------------ISTIEKAIHEAQKT-G-IYSILDMLNV--------- 286 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc-C-CEEEEEEcCC---------
Confidence 6677899999999997542 12356677777774 3 145663 343
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh-cCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA-FKGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~-~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
.++. +.++.+ ..++|++.++.+.... ...+.+..++.+|+. .+.++.+.||++.+.+..+++.| +|++.+|
T Consensus 287 ~tp~----e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aG-ADivVVG 358 (391)
T PRK13307 287 EDPV----KLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAG-ADILVVG 358 (391)
T ss_pred CCHH----HHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcC-CCEEEEe
Confidence 1222 234444 4579999887532211 112234556667775 35789999999999999999998 9999999
Q ss_pred hHHhhCCcHHHHH
Q 015862 347 RLFLANPDLPRRF 359 (399)
Q Consensus 347 R~~iadPdl~~k~ 359 (399)
|+++..+|....+
T Consensus 359 saIf~a~Dp~~aa 371 (391)
T PRK13307 359 RAITKSKDVRRAA 371 (391)
T ss_pred HHHhCCCCHHHHH
Confidence 9999877754443
No 181
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.54 E-value=0.013 Score=56.91 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ceEEEecCCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD---RVGIRLSPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~---~v~vrls~~~~~ 262 (399)
.+.+++|.++||+-|-+.+.+ -.+|...++.+|+++..+.. |-. .|| ++...++.
T Consensus 87 ~e~i~~ai~~GFtSVM~DgS~--------------------lp~eeNi~~T~evv~~Ah~~-gv~VEaElG-~igg~ed~ 144 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDGSH--------------------FPFAENVKLVKSVVDFCHSQ-DCSVEAELG-RLGGVEDD 144 (286)
T ss_pred HHHHHHHHHcCCCeEeecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEE-eeCCccCC
Confidence 345677889999999998766 14788899999999999874 221 122 22222221
Q ss_pred CCCC----CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC--CchhhHHHHhhcCCcEEEeCC--CCHHHHHHH
Q 015862 263 MESG----DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE--CPHSLLPMRKAFKGTFLVAGG--YDREDGNKA 334 (399)
Q Consensus 263 ~~~~----~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~ 334 (399)
.... ...+.+++.+++ ++.|+|.|-++-++....|...+ ..+.+++|++.+++|++.=|+ +..++..++
T Consensus 145 ~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~ka 221 (286)
T PRK12738 145 MSVDAESAFLTDPQEAKRFV---ELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRT 221 (286)
T ss_pred cccccchhcCCCHHHHHHHH---HHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 0000 022455566555 45799999998877554443333 345788999999999776665 468889999
Q ss_pred HHcCCCcEEEechH
Q 015862 335 IAEGRADLVVYGRL 348 (399)
Q Consensus 335 L~~G~~D~V~~gR~ 348 (399)
++.|.+- |=++..
T Consensus 222 i~~GI~K-iNi~T~ 234 (286)
T PRK12738 222 IELGVTK-VNVATE 234 (286)
T ss_pred HHcCCeE-EEeCcH
Confidence 9999543 444433
No 182
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.54 E-value=0.0035 Score=65.73 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=57.9
Q ss_pred hhhhCceEEEEeCCCccc---ccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCc---EEEechHHhhCCc
Q 015862 281 LNKYGILYCHMVEPRMKT---REEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRAD---LVVYGRLFLANPD 354 (399)
Q Consensus 281 Le~~Gvd~l~v~~~~~~~---~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D---~V~~gR~~iadPd 354 (399)
..+.|+||+-++ +.+.. +...+..++.++.+.+..++||++.||++++.+.++++.| +| +|+++++++..+|
T Consensus 406 a~~~gadyi~~g-pif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G-~~~~~gvav~~~i~~~~d 483 (502)
T PLN02898 406 AWKDGADYIGCG-GVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESG-APNLKGVAVVSALFDQED 483 (502)
T ss_pred HhhcCCCEEEEC-CeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcC-CCcCceEEEEeHHhcCCC
Confidence 445799999864 22211 1122224566777777789999999999999999999998 77 9999999997777
Q ss_pred HHHHHH
Q 015862 355 LPRRFE 360 (399)
Q Consensus 355 l~~k~~ 360 (399)
..+.++
T Consensus 484 ~~~~~~ 489 (502)
T PLN02898 484 VLKATR 489 (502)
T ss_pred HHHHHH
Confidence 655544
No 183
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=97.53 E-value=0.00071 Score=63.39 Aligned_cols=92 Identities=20% Similarity=0.317 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh
Q 015862 237 LEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA 315 (399)
Q Consensus 237 ~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~ 315 (399)
.+.|++||+++|++ .+.+..|. ..+.+++.++++.|++.++.|++ +|. .....+..+.+++.
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~---------~~~~~~a~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~L~~~ 143 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANG---------AWTPKEAIRLIRALEKYGLAWIE--EPC------APDDLEGYAALRRR 143 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCC---------CCCHHHHHHHHHHhhhcCCCeEE--CCC------CccCHHHHHHHHhh
Confidence 89999999999976 46666654 23568899999999999999988 542 11235567789999
Q ss_pred cCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 316 FKGTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 316 ~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
.++||++...+ ++++...+++.+.+|++-+
T Consensus 144 ~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 144 TGIPIAADESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence 99999886667 8999999999999998865
No 184
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.52 E-value=0.012 Score=57.01 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ceEEEecCCccc-
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD---RVGIRLSPFANY- 262 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~---~v~vrls~~~~~- 262 (399)
+..++|.++||+-|-+.+.+ -++|...+..+++++-.+.. |-. .|| ++...++.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vv~~Ah~~-gv~VEaElG-~vgg~e~~~ 145 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSH--------------------LPFAQNISLVKEVVDFCHRF-DVSVEAELG-RLGGQEDDL 145 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEe-cccCcccCc
Confidence 44678889999999998765 14788899999999998864 321 122 12222221
Q ss_pred CCCC---CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC--CchhhHHHHhhcCCcEEEeCC--CCHHHHHHHH
Q 015862 263 MESG---DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE--CPHSLLPMRKAFKGTFLVAGG--YDREDGNKAI 335 (399)
Q Consensus 263 ~~~~---~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L 335 (399)
.... ...+.+++.+|++ +.|+|++-++-++....+...+ ..+.++.|++.+++|++.=|+ +..++..+++
T Consensus 146 ~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai 222 (284)
T PRK09195 146 QVDEADALYTDPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTI 222 (284)
T ss_pred ccccccccCCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH
Confidence 0000 0224566666664 6799999998777544443333 345788999999999776554 5788899999
Q ss_pred HcCCCcEEEechHHh
Q 015862 336 AEGRADLVVYGRLFL 350 (399)
Q Consensus 336 ~~G~~D~V~~gR~~i 350 (399)
+.|.+ =|=++..+.
T Consensus 223 ~~Gi~-KiNi~T~l~ 236 (284)
T PRK09195 223 KLGIC-KVNVATELK 236 (284)
T ss_pred HcCCe-EEEeCcHHH
Confidence 99944 455555544
No 185
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.51 E-value=0.00037 Score=65.65 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=68.8
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
-.++++.+.+.|++.+|+..-... .....+.+.++++.+....|+...||+ |.++++++++.| +|-|.+|..++.|
T Consensus 32 P~~~a~~~~~~ga~~lhivDLd~a--~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~G-a~kvvigt~a~~~ 108 (232)
T PRK13586 32 PIEIASKLYNEGYTRIHVVDLDAA--EGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLD-VNALVFSTIVFTN 108 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCc--CCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCC-CCEEEECchhhCC
Confidence 456888898999999998654321 133345577777777433599999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|++.+++.+.
T Consensus 109 p~~~~~~~~~ 118 (232)
T PRK13586 109 FNLFHDIVRE 118 (232)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 186
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.51 E-value=0.015 Score=55.29 Aligned_cols=205 Identities=18% Similarity=0.154 Sum_probs=129.1
Q ss_pred HHHHHHHHhhc----C-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHHHHHHHc-CCeEEEecccCCCccCCC
Q 015862 64 PHAILYYSQRT----T-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAK-GGIFFCQIRHVGRVSNRD 137 (399)
Q Consensus 64 ~~~~~~y~~~a----~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~vh~~-g~~i~~QL~H~Gr~~~~~ 137 (399)
+..+++-.+-| . |.--|+.|+..=.| +. .. ..++.+..+..++.++++. +.++++|+...
T Consensus 25 ~~iie~A~~ea~~l~~~GvDgiiveN~~D~P----y~--~~-~~~etvaaM~~i~~~v~~~~~~p~GVnvL~n------- 90 (254)
T PF03437_consen 25 EEIIERAVREAEALEEGGVDGIIVENMGDVP----YP--KR-VGPETVAAMARIAREVRREVSVPVGVNVLRN------- 90 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCCCCC----cc--CC-CCHHHHHHHHHHHHHHHHhCCCCEEeeeecC-------
Confidence 55555555433 2 44457777642111 11 12 5688999999999999876 67888888520
Q ss_pred CCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCc
Q 015862 138 YQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQ 217 (399)
Q Consensus 138 ~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~ 217 (399)
.+ ..+-..|..+|+|.|.++.-+|-.+
T Consensus 91 -------------------------------d~---------------~aalaiA~A~ga~FIRv~~~~g~~~------- 117 (254)
T PF03437_consen 91 -------------------------------DP---------------KAALAIAAATGADFIRVNVFVGAYV------- 117 (254)
T ss_pred -------------------------------CC---------------HHHHHHHHHhCCCEEEecCEEceec-------
Confidence 01 4455678889999999886554211
Q ss_pred ccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc
Q 015862 218 VNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRM 296 (399)
Q Consensus 218 ~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~ 296 (399)
+| .|-++.++ .|+++ .|+.++.+ .|.-.+.. .........++++. ....++..+.|.|-++....
T Consensus 118 ----~d--~G~~~~~a---~e~~r-~R~~l~a~v~ilaDV~~--kh~~~l~~~~~~~~--~~~a~~~~~aDaviVtG~~T 183 (254)
T PF03437_consen 118 ----TD--EGIIEGCA---GELLR-YRKRLGADVKILADVHV--KHSSPLATRDLEEA--AKDAVERGGADAVIVTGKAT 183 (254)
T ss_pred ----cc--CccccccH---HHHHH-HHHHcCCCeEEEeeech--hhcccCCCCCHHHH--HHHHHHhcCCCEEEECCccc
Confidence 23 25555444 34333 46667766 23333432 11111122344443 22334566799998876533
Q ss_pred ccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcH
Q 015862 297 KTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 297 ~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl 355 (399)
..++..+.++.+|+.++.||++++|+|++.+.++|+. ||.+.+|..|-.|=.|
T Consensus 184 ----G~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~--ADG~IVGS~~K~~G~~ 236 (254)
T PF03437_consen 184 ----GEPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY--ADGAIVGSYFKKDGKW 236 (254)
T ss_pred ----CCCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh--CCEEEEeeeeeeCCEe
Confidence 2344667888999999999999999999999999975 8999999987755444
No 187
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.51 E-value=0.00067 Score=63.13 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEech
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR 347 (399)
..++....|...+..|+-++.+. . +. ...+.+.++.+++.+ +.|++.+||| |+++|+++++.| +|.|.+|-
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~--SG---~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs 205 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-Y--SG---AYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG-ADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-C--CC---CcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECc
Confidence 45566667777777775554443 1 11 113567899999998 8999999999 999999999988 99999999
Q ss_pred HHhhCCcHHHHHH
Q 015862 348 LFLANPDLPRRFE 360 (399)
Q Consensus 348 ~~iadPdl~~k~~ 360 (399)
.+..||++..++.
T Consensus 206 ai~~~p~~~~~~v 218 (219)
T cd02812 206 IVEEDPNAALETV 218 (219)
T ss_pred hhhCCHHHHHHHh
Confidence 9999999988764
No 188
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.50 E-value=0.00039 Score=65.89 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=69.1
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+.+.|++.+|+..-... ......+.+.++.|.+.+ .||...||+ |.++++++|+.| +|-|.+|..++.|
T Consensus 32 P~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~G-a~rvvigT~a~~~ 108 (241)
T PRK14114 32 PAELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLG-YRRQIVSSKVLED 108 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCC-CCEEEECchhhCC
Confidence 456888888999999998643211 113344667788888877 799999999 899999999998 9999999999999
Q ss_pred CcHHHHHHh
Q 015862 353 PDLPRRFEL 361 (399)
Q Consensus 353 Pdl~~k~~~ 361 (399)
|++++++.+
T Consensus 109 p~~l~~~~~ 117 (241)
T PRK14114 109 PSFLKFLKE 117 (241)
T ss_pred HHHHHHHHH
Confidence 999999943
No 189
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.48 E-value=0.017 Score=55.94 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=89.6
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE---ecCCccc-
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR---LSPFANY- 262 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr---ls~~~~~- 262 (399)
+..++|.++||+-|-+.+.+ -++|...+..+++++..+.. |- .|-.- +...++.
T Consensus 86 e~i~~ai~~GFtSVM~DgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv-~VEaElG~vgg~e~~~ 143 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSH--------------------FPFAQNVKLVKEVVDFCHRQ-DC-SVEAELGRLGGVEDDL 143 (282)
T ss_pred HHHHHHHHcCCCEEeecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEEEEEecCCccCCC
Confidence 44688999999999998765 14788899999999998874 32 12222 2222211
Q ss_pred C--CC-CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC--CchhhHHHHhhcCCcEEEeCC--CCHHHHHHHH
Q 015862 263 M--ES-GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE--CPHSLLPMRKAFKGTFLVAGG--YDREDGNKAI 335 (399)
Q Consensus 263 ~--~~-~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L 335 (399)
. +. ....+.+++.+++ ++.|+|+|-++-++....+...+ ..+.++.|++.+++|++.=|+ ++.++..+++
T Consensus 144 ~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai 220 (282)
T TIGR01858 144 SVDEEDALYTDPQEAKEFV---EATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTI 220 (282)
T ss_pred ccccchhccCCHHHHHHHH---HHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH
Confidence 0 00 0022345566664 47899999998777544443333 345788999999999776654 5788899999
Q ss_pred HcCCCcEEEechHH
Q 015862 336 AEGRADLVVYGRLF 349 (399)
Q Consensus 336 ~~G~~D~V~~gR~~ 349 (399)
+.|.+ =|=++..+
T Consensus 221 ~~Gi~-KiNi~T~l 233 (282)
T TIGR01858 221 ELGIC-KVNVATEL 233 (282)
T ss_pred HcCCe-EEEeCcHH
Confidence 99944 35454443
No 190
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.47 E-value=0.0022 Score=59.45 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=40.3
Q ss_pred hhHHHHhhcC-----CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 308 SLLPMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 308 ~~~~ir~~~~-----~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
.++.+++.++ .+|.+.||++++++.++++.| +|.|.+|++++.+||+.+.++
T Consensus 156 ~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~G-aD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 156 KIRELRKLIDERGLDILIEVDGGINADNIKECAEAG-ADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence 3445555443 235577999999999999988 999999999999999766554
No 191
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0036 Score=58.65 Aligned_cols=138 Identities=16% Similarity=0.127 Sum_probs=92.7
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
.+.+.+..++|.+-|-|-..- ..| .+.++++.+..|.. .|++....... .-
T Consensus 87 ~~~v~~ll~~G~~rViiGt~a----------v~~-----------------p~~v~~~~~~~g~rivv~lD~r~g~v-av 138 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAA----------VKN-----------------PDLVKELCEEYGDRIVVALDARDGKV-AV 138 (241)
T ss_pred HHHHHHHHHCCCCEEEEecce----------ecC-----------------HHHHHHHHHHcCCcEEEEEEccCCcc-cc
Confidence 566777888999999865322 111 45666777778833 34554432111 11
Q ss_pred CCCCChH-HHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHc-CCCc
Q 015862 265 SGDSNPE-ALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAE-GRAD 341 (399)
Q Consensus 265 ~~~~~~~-~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~-G~~D 341 (399)
.+|.+.. -+..++++.+++.|+..+-++.-+.... ...++.+..+++.+++++||+++||+ +.+|.+.+-+. | ++
T Consensus 139 ~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGt-l~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G-~~ 216 (241)
T COG0106 139 SGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGT-LSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSG-VE 216 (241)
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecccccc-cCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCC-Cc
Confidence 1333322 2467899999999987665543222111 12346778889999999999999999 89998888777 6 99
Q ss_pred EEEechHHhhCC
Q 015862 342 LVVYGRLFLANP 353 (399)
Q Consensus 342 ~V~~gR~~iadP 353 (399)
.|.+||+++..-
T Consensus 217 GvIvG~ALy~g~ 228 (241)
T COG0106 217 GVIVGRALYEGK 228 (241)
T ss_pred EEEEehHHhcCC
Confidence 999999999765
No 192
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.46 E-value=0.0048 Score=62.75 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=56.5
Q ss_pred hhhhCceEEEEeCCCcccc-c---ccCCCchhhHHHHhhc---------CCcEEEeCCCCHHHHHHHHHcCCCcEEEech
Q 015862 281 LNKYGILYCHMVEPRMKTR-E---EKSECPHSLLPMRKAF---------KGTFLVAGGYDREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 281 Le~~Gvd~l~v~~~~~~~~-~---~~~~~~~~~~~ir~~~---------~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR 347 (399)
.++.|+|||-+. +.+... . ..+..++.++.+++.+ ++||++.|||+++++.++++.| +|.|++-|
T Consensus 316 A~~~gaDYI~lG-PIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aG-a~GVAVVS 393 (437)
T PRK12290 316 IVQIQPSYIALG-HIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCG-VSSLAVVR 393 (437)
T ss_pred HhhcCCCEEEEC-CccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeh
Confidence 345799999874 323211 1 1222344555555554 6899999999999999999999 99999999
Q ss_pred HHhhCCcHHHHHH
Q 015862 348 LFLANPDLPRRFE 360 (399)
Q Consensus 348 ~~iadPdl~~k~~ 360 (399)
+++..+|....++
T Consensus 394 AI~~A~DP~aa~~ 406 (437)
T PRK12290 394 AITLAEDPQLVIE 406 (437)
T ss_pred HhhcCCCHHHHHH
Confidence 9998888655544
No 193
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.41 E-value=0.02 Score=55.44 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=88.6
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE---ecCCcccC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR---LSPFANYM 263 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr---ls~~~~~~ 263 (399)
+.+++|.++||+-|-|.+.+ =++|...+..+|+++..+.. |- .|-.- +...++..
T Consensus 91 e~i~~ai~~GftSVM~DgS~--------------------lp~eeNi~~Trevv~~Ah~~-gv-~VEaElG~igg~ed~~ 148 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASH--------------------HPFEENVETTKKVVEYAHAR-NV-SVEAELGTVGGQEDDV 148 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEEeccCCccCCc
Confidence 34458888999999998765 15688899999999998864 32 22222 22222110
Q ss_pred --CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC--CchhhHHHHhhcCCcEEEeCC--CCHHHHHHHHHc
Q 015862 264 --ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE--CPHSLLPMRKAFKGTFLVAGG--YDREDGNKAIAE 337 (399)
Q Consensus 264 --~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L~~ 337 (399)
+.....+.+++.+|++ +.|+|+|-++-++....|...+ ..+.++.|++.+++|++.=|+ +..++..++++.
T Consensus 149 ~~~~~~yT~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~ 225 (285)
T PRK07709 149 IAEGVIYADPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISL 225 (285)
T ss_pred ccccccCCCHHHHHHHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHc
Confidence 0001234566666664 5699999998777544443333 345688899999999776665 467889999999
Q ss_pred CCCcEEEechH
Q 015862 338 GRADLVVYGRL 348 (399)
Q Consensus 338 G~~D~V~~gR~ 348 (399)
|.+- |=++..
T Consensus 226 Gi~K-iNi~T~ 235 (285)
T PRK07709 226 GTSK-INVNTE 235 (285)
T ss_pred CCeE-EEeChH
Confidence 9543 444433
No 194
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.41 E-value=0.0043 Score=58.53 Aligned_cols=136 Identities=8% Similarity=0.013 Sum_probs=87.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
.+.++++.++|+|-|-|...- .+. .++++.+.+..|.. .+++..... ....
T Consensus 88 ~e~v~~~l~~Ga~kvvigt~a-----------------------~~~----~~~l~~~~~~fg~~ivvslD~~~g-~v~~ 139 (234)
T PRK13587 88 KSQIMDYFAAGINYCIVGTKG-----------------------IQD----TDWLKEMAHTFPGRIYLSVDAYGE-DIKV 139 (234)
T ss_pred HHHHHHHHHCCCCEEEECchH-----------------------hcC----HHHHHHHHHHcCCCEEEEEEeeCC-EEEe
Confidence 455677778999999765332 111 45566666666744 356654321 1111
Q ss_pred CCCCC-hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 265 SGDSN-PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 265 ~~~~~-~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
.+|.. +.-+..++++.+++.|+..+-++.-..... ...++.+.++.+.+.+++||++.||+ +++++.++++.| +|.
T Consensus 140 ~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt-~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~ 217 (234)
T PRK13587 140 NGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGK-MSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN-VHA 217 (234)
T ss_pred cCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCC-CCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCE
Confidence 11111 112246688888888877554432211111 12346678888888889999999999 899999999887 999
Q ss_pred EEechHHhh
Q 015862 343 VVYGRLFLA 351 (399)
Q Consensus 343 V~~gR~~ia 351 (399)
|.+|+++..
T Consensus 218 vivG~a~~~ 226 (234)
T PRK13587 218 AIIGKAAHQ 226 (234)
T ss_pred EEEhHHHHh
Confidence 999999986
No 195
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0023 Score=59.28 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+.-++.|.+.|+|-|++-.--|+|.+ .+...+.+-|++|++++++. +.+|+=...
T Consensus 80 ~~Ea~~ai~~GAdEiDmVinig~~k~-------------------g~~~~V~~eI~~v~~a~~~~-~~lKVIlEt----- 134 (228)
T COG0274 80 AAEAREAIENGADEIDMVINIGALKS-------------------GNWEAVEREIRAVVEACADA-VVLKVILET----- 134 (228)
T ss_pred HHHHHHHHHcCCCeeeeeeeHHHHhc-------------------CCHHHHHHHHHHHHHHhCCC-ceEEEEEec-----
Confidence 56678899999999998876666554 23568899999999999875 333332211
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
...+.++-...++...++|+||+--|.+.. ....-.+.++.+++.+. +-|=++||+ |.++|..+|+.| ++-
T Consensus 135 -~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ag-a~R 208 (228)
T COG0274 135 -GLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAG-ATR 208 (228)
T ss_pred -cccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHh-HHH
Confidence 122344557778888899999998765522 23345567777888876 447789999 999999999999 888
Q ss_pred EEechHH
Q 015862 343 VVYGRLF 349 (399)
Q Consensus 343 V~~gR~~ 349 (399)
++..++.
T Consensus 209 iGtSs~v 215 (228)
T COG0274 209 IGTSSGV 215 (228)
T ss_pred hccccHH
Confidence 8887765
No 196
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.40 E-value=0.00084 Score=62.85 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=70.2
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+++.|++.+++..-... ......+.+.++.+++.++.|+.+.|++ +.++++.+++.| +|.|.++-.++.|
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~G-a~~vvlgs~~l~d 107 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLG-VDRVIIGTAAVEN 107 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEEChHHhhC
Confidence 456888899999999998533211 0122335678889999999999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 015862 353 PDLPRRFELN 362 (399)
Q Consensus 353 Pdl~~k~~~g 362 (399)
|++..++.+.
T Consensus 108 ~~~~~~~~~~ 117 (230)
T TIGR00007 108 PDLVKELLKE 117 (230)
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 197
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.40 E-value=0.032 Score=53.99 Aligned_cols=137 Identities=16% Similarity=0.101 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEec---CCcccC-
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS---PFANYM- 263 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls---~~~~~~- 263 (399)
..++|.++||+.|-+-+.+ =++|+..+..+++++..+. .|- .|-.-++ ..++..
T Consensus 89 ~i~~Ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~-~gv-~VEaElG~vgg~ed~~~ 146 (283)
T PRK07998 89 DVKQAVRAGFTSVMIDGAA--------------------LPFEENIAFTKEAVDFAKS-YGV-PVEAELGAILGKEDDHV 146 (283)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEEEeccCCCcccccc
Confidence 3346778999999987644 1577788899999998886 342 2322222 211110
Q ss_pred -CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccC-CCchhhHHHHhhcCCcEEEeCC--CCHHHHHHHHHcCC
Q 015862 264 -ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKS-ECPHSLLPMRKAFKGTFLVAGG--YDREDGNKAIAEGR 339 (399)
Q Consensus 264 -~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~-~~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L~~G~ 339 (399)
+.....+.+++.+++ ++.|+|.+-++-++....|..+ -..+.++.|++.+++|++.=|+ ++.++..++++.|
T Consensus 147 ~~~~~~T~pe~a~~Fv---~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~G- 222 (283)
T PRK07998 147 SEADCKTEPEKVKDFV---ERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYK- 222 (283)
T ss_pred ccccccCCHHHHHHHH---HHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcC-
Confidence 000122445555554 4679999988777654444331 2346788999999999776665 4678899999999
Q ss_pred CcEEEechHHh
Q 015862 340 ADLVVYGRLFL 350 (399)
Q Consensus 340 ~D~V~~gR~~i 350 (399)
+-=|=+++.+.
T Consensus 223 i~KiNi~Tel~ 233 (283)
T PRK07998 223 VAKVNIASDLR 233 (283)
T ss_pred CcEEEECHHHH
Confidence 55677777753
No 198
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.37 E-value=0.00086 Score=63.63 Aligned_cols=84 Identities=19% Similarity=0.088 Sum_probs=69.4
Q ss_pred HHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 276 YMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 276 ~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
..++.+++.|..++|+..-..- .....+.+.++.+.+.+..|+...||+ |.++++.+|+.| +|-|.+|..++.||+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~G-a~~vvigT~a~~~p~ 111 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGG-RARVNGGTAALENPW 111 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcC-CCEEEECchhhCCHH
Confidence 4566678889999998643221 133456678888989899999999999 999999999998 999999999999999
Q ss_pred HHHHHHhC
Q 015862 355 LPRRFELN 362 (399)
Q Consensus 355 l~~k~~~g 362 (399)
|.+++.+-
T Consensus 112 ~~~~~~~~ 119 (243)
T TIGR01919 112 WAAAVIRY 119 (243)
T ss_pred HHHHHHHH
Confidence 99998763
No 199
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.37 E-value=0.0011 Score=61.25 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 269 NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 269 ~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
.+.++....+...+..|++++++...+-. ...-..+.++.+|+.++.|++.+||+ |+++++++++.| +|.|.+|
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVVG 205 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEeC
Confidence 46677888888888999999998653211 22234678999999999999999999 999999999998 9999876
No 200
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.36 E-value=0.0013 Score=66.23 Aligned_cols=98 Identities=17% Similarity=0.084 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh
Q 015862 236 ALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA 315 (399)
Q Consensus 236 ~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~ 315 (399)
.-+-|+.+|+.++ -||.+|=-. +.++ ++.+.+.|+|.|.|+...-.+.....+....+.+++++
T Consensus 241 tW~~i~~lr~~~~-~pvivKgV~-----------~~~d----A~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~ 304 (383)
T cd03332 241 TWEDLAFLREWTD-LPIVLKGIL-----------HPDD----ARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEA 304 (383)
T ss_pred CHHHHHHHHHhcC-CCEEEecCC-----------CHHH----HHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHH
Confidence 3578999999874 377776211 2233 44566789999998753211112223344567778887
Q ss_pred c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 316 F--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 316 ~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
+ ++||++.||+ +..++.++|.-| +|+|++||+++
T Consensus 305 ~~~~~~vi~dGGIr~G~Dv~KALaLG-A~~v~iGr~~l 341 (383)
T cd03332 305 VGDRLTVLFDSGVRTGADIMKALALG-AKAVLIGRPYA 341 (383)
T ss_pred hcCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence 7 3899999999 899999999999 99999999999
No 201
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.35 E-value=0.00074 Score=63.64 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=72.1
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..++++.+.+.|++++|+..-... .....+.+.++.+.+.+.+|+...||+ +.++++++|..| |+-|.+|...+.|
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~G-a~~viigt~~~~~ 113 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRG-ASRVIVGTETLPS 113 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcC-CCeEEEcceeccc
Confidence 456888999999999998754321 234456778888988889999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhCC
Q 015862 353 PDLPRRFELNA 363 (399)
Q Consensus 353 Pdl~~k~~~g~ 363 (399)
+|.+++.+.-
T Consensus 114 -~~~~~~~~~~ 123 (233)
T cd04723 114 -DDDEDRLAAL 123 (233)
T ss_pred -hHHHHHHHhc
Confidence 9999887753
No 202
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.34 E-value=0.024 Score=54.97 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=85.5
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE---ecCCcccCCC
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR---LSPFANYMES 265 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr---ls~~~~~~~~ 265 (399)
.++|.++||+-|-|.+.| =++|+..+..+++++..+.. |- .|-.- +...++....
T Consensus 93 i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~~-gv-~VEaElG~vgg~ed~~~~ 150 (286)
T PRK08610 93 CKEAIDAGFTSVMIDASH--------------------SPFEENVATTKKVVEYAHEK-GV-SVEAELGTVGGQEDDVVA 150 (286)
T ss_pred HHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEEeccCCccCCCCC
Confidence 366899999999999766 14788899999999988853 32 22222 2222221100
Q ss_pred C--CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC--CchhhHHHHhhcCCcEEEeCC--CCHHHHHHHHHcCC
Q 015862 266 G--DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE--CPHSLLPMRKAFKGTFLVAGG--YDREDGNKAIAEGR 339 (399)
Q Consensus 266 ~--~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L~~G~ 339 (399)
. ...+.+++.+++ ++.|+|+|-++-++....|...+ ..+.++.|++.+++|++.=|+ +..++..++++.|.
T Consensus 151 ~~~~yT~peea~~Fv---~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI 227 (286)
T PRK08610 151 DGIIYADPKECQELV---EKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGT 227 (286)
T ss_pred cccccCCHHHHHHHH---HHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCC
Confidence 0 123456666666 46899999998877554443333 345688899999999776665 46788999999995
Q ss_pred Cc
Q 015862 340 AD 341 (399)
Q Consensus 340 ~D 341 (399)
+-
T Consensus 228 ~K 229 (286)
T PRK08610 228 AK 229 (286)
T ss_pred eE
Confidence 43
No 203
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.32 E-value=0.0049 Score=58.39 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
.+.++++.++|+|-|-|...- ++ .+ ++++.+. +.|.. .+++..... ....
T Consensus 85 ~e~~~~~l~~Ga~rvvigT~a----------------------~~-~p----~~l~~~~-~~~~~ivvslD~k~g-~v~~ 135 (241)
T PRK14114 85 LDYAEKLRKLGYRRQIVSSKV----------------------LE-DP----SFLKFLK-EIDVEPVFSLDTRGG-KVAF 135 (241)
T ss_pred HHHHHHHHHCCCCEEEECchh----------------------hC-CH----HHHHHHH-HhCCCEEEEEEccCC-EEee
Confidence 566677788999998766432 11 12 3444552 35654 456655321 1111
Q ss_pred CCCCC-hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHc-----
Q 015862 265 SGDSN-PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAE----- 337 (399)
Q Consensus 265 ~~~~~-~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~----- 337 (399)
.+|.. +.-...++++.+++.|+..+-++.-....+ ...++.+.++.+++.+++||+++||+ +.++..++.+-
T Consensus 136 ~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt-~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~ 214 (241)
T PRK14114 136 KGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT-LQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETN 214 (241)
T ss_pred CCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhc-CCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccC
Confidence 12211 222356789999999987665432111111 12356778889999899999999999 89999988875
Q ss_pred CCCcEEEechHHhhCC
Q 015862 338 GRADLVVYGRLFLANP 353 (399)
Q Consensus 338 G~~D~V~~gR~~iadP 353 (399)
|+++.|.+|+++...-
T Consensus 215 g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 215 GLLKGVIVGRAFLEGI 230 (241)
T ss_pred CcEEEEEEehHHHCCC
Confidence 4599999999987654
No 204
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.31 E-value=0.018 Score=55.94 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=88.4
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE---ecCCccc-
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR---LSPFANY- 262 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr---ls~~~~~- 262 (399)
+..++|.++||+-|-|.+.+ -++|...+..+++++-.+.. |- .|-.- +...++.
T Consensus 91 e~i~~ai~~GftSVMiDgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv-~VEaElG~vgg~e~~~ 148 (288)
T TIGR00167 91 EDCAQAVKAGFSSVMIDGSH--------------------EPFEENIELTKKVVERAHKM-GV-SVEAELGTLGGEEDGV 148 (288)
T ss_pred HHHHHHHHcCCCEEEecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEEeeccCccCCc
Confidence 44677889999999998766 15688899999999988764 22 22222 2222211
Q ss_pred CCC---CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccC---CCchhhHHHHhhcCCcEEEeCC--CCHHHHHHH
Q 015862 263 MES---GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKS---ECPHSLLPMRKAFKGTFLVAGG--YDREDGNKA 334 (399)
Q Consensus 263 ~~~---~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~---~~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~ 334 (399)
... ....+.+++.+|+ ++.|+|.|-++-++....+... -..+.++.|++.+++|++.=|+ +..++..++
T Consensus 149 ~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~a 225 (288)
T TIGR00167 149 SVADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKA 225 (288)
T ss_pred ccccccccCCCHHHHHHHH---hccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 000 0022345555554 5679999999887754444322 3456789999999999776665 467889999
Q ss_pred HHcCCCcEEEechHH
Q 015862 335 IAEGRADLVVYGRLF 349 (399)
Q Consensus 335 L~~G~~D~V~~gR~~ 349 (399)
++.|.+- |=++..+
T Consensus 226 i~~Gi~K-iNi~T~l 239 (288)
T TIGR00167 226 ISLGVVK-VNIDTEL 239 (288)
T ss_pred HHcCCeE-EEcChHH
Confidence 9999443 4454443
No 205
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.30 E-value=0.0072 Score=66.46 Aligned_cols=105 Identities=9% Similarity=-0.039 Sum_probs=69.8
Q ss_pred HHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHH---hhhhhCceEEEEeCCCccc-cccc---CCCchhhHH
Q 015862 240 VEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAE---SLNKYGILYCHMVEPRMKT-REEK---SECPHSLLP 311 (399)
Q Consensus 240 i~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~---~Le~~Gvd~l~v~~~~~~~-~~~~---~~~~~~~~~ 311 (399)
++.+|+..|++ .|++ |.. +.++...+.. .+-++|+||+-++. .+.. ..+. ...++.+++
T Consensus 91 ~~~~r~~~~~~~~iG~--S~h----------~~~e~~~~~~~~~~~g~~gaDYi~~Gp-vf~T~tK~~~~~~lG~~~l~~ 157 (755)
T PRK09517 91 YTQARRLLPAHLELGL--TIE----------TLDQLEAVIAQCAETGVALPDVIGIGP-VASTATKPDAPPALGVDGIAE 157 (755)
T ss_pred HHHHHHhcCCCCEEEE--eCC----------CHHHHHHHHhhhccCCCCCCCEEEECC-ccccCCCCCCCCCCCHHHHHH
Confidence 45667777766 5676 432 2333222211 12234699998753 2221 1111 124567788
Q ss_pred HHhhcC---CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHH
Q 015862 312 MRKAFK---GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 312 ir~~~~---~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
+++.++ +||++-|||+++++.++++.| +|+|++.++++..+|....
T Consensus 158 ~~~~~~~~~iPv~AiGGI~~~~~~~~~~~G-a~giAvisai~~a~d~~~a 206 (755)
T PRK09517 158 IAAVAQDHGIASVAIGGVGLRNAAELAATG-IDGLCVVSAIMAAANPAAA 206 (755)
T ss_pred HHHhcCcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhCCCCHHHH
Confidence 888887 999999999999999999998 9999999999988875433
No 206
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.30 E-value=0.0031 Score=58.93 Aligned_cols=139 Identities=18% Similarity=0.324 Sum_probs=88.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 015862 171 RRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 250 (399)
Q Consensus 171 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~ 250 (399)
|-|.. +.+..++.| .++|+|.|-+|.=. +.-+.++++.||+. |-
T Consensus 64 HLMv~-~p~~~i~~~-------~~~gad~i~~H~Ea--------------------------~~~~~~~l~~ik~~-g~- 107 (220)
T PRK08883 64 HLMVK-PVDRIIPDF-------AKAGASMITFHVEA--------------------------SEHVDRTLQLIKEH-GC- 107 (220)
T ss_pred EeccC-CHHHHHHHH-------HHhCCCEEEEcccC--------------------------cccHHHHHHHHHHc-CC-
Confidence 44553 455566665 45899999999532 11256788899885 32
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe--CCCcccccccCCCchhhHHHHhhc-----CCcEEEe
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV--EPRMKTREEKSECPHSLLPMRKAF-----KGTFLVA 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~ 323 (399)
..++=+++ ..+.+....++.. +|++-+- .|.++....-+...+-++++|+.+ +.|+.+-
T Consensus 108 k~GlalnP---------~Tp~~~i~~~l~~-----~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd 173 (220)
T PRK08883 108 QAGVVLNP---------ATPLHHLEYIMDK-----VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID 173 (220)
T ss_pred cEEEEeCC---------CCCHHHHHHHHHh-----CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 46777787 2355554444432 4544332 232221111112233455666655 3778899
Q ss_pred CCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 324 GGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 324 Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
||++.+.+.++++.| +|.+.+|++++..+|..+.++
T Consensus 174 GGI~~eni~~l~~aG-Ad~vVvGSaIf~~~d~~~~i~ 209 (220)
T PRK08883 174 GGVKVDNIREIAEAG-ADMFVAGSAIFGQPDYKAVID 209 (220)
T ss_pred CCCCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHHH
Confidence 999999999999999 999999999998777544443
No 207
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.29 E-value=0.0014 Score=61.09 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=61.2
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+..++..+-..-+-|++-+.+ +..+-+.+.++.+|+.+ +.|++.+||+ |+++++++++.| +|.|.+|-.+..
T Consensus 140 ~~~lA~~~~g~~~vYlE~gs~-----~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs~~~~ 213 (223)
T TIGR01768 140 YAAMAEEMLGMPIIYLEAGSG-----APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG-ADTIVTGNVIEE 213 (223)
T ss_pred HHHHHHHHcCCcEEEEEecCC-----CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC-CCEEEECcHHhh
Confidence 344444443333556664332 12333567899999998 8999999999 999999999988 999999999999
Q ss_pred CCcHHHHHH
Q 015862 352 NPDLPRRFE 360 (399)
Q Consensus 352 dPdl~~k~~ 360 (399)
||+++.++-
T Consensus 214 dp~~~~~~v 222 (223)
T TIGR01768 214 DVDKALETI 222 (223)
T ss_pred CHHHHHHhh
Confidence 999988763
No 208
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.29 E-value=0.018 Score=55.90 Aligned_cols=189 Identities=17% Similarity=0.132 Sum_probs=115.5
Q ss_pred HhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCccc--------CCCCCCcccccCCCcccCCCCCCCCChhH
Q 015862 106 VEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISC--------TDKPLTPQIRANGVDVAQFTPPRRLRTDE 177 (399)
Q Consensus 106 i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~ap--------s~~~~~~~~~~~g~~~~~~~~p~~mt~~e 177 (399)
.+.++.+++++.+.++++++|+......- .+...+.+ +.+|..- . . -|..+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~------~g~~~~~~~~~~~a~~~~VPVal-----H-----L--DH~~~--- 86 (284)
T PRK12737 28 LETLQVVVETAAELRSPVILAGTPGTFSY------AGTDYIVAIAEVAARKYNIPLAL-----H-----L--DHHED--- 86 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccHHhh------CCHHHHHHHHHHHHHHCCCCEEE-----E-----C--CCCCC---
Confidence 45778889999999999999997533210 01000111 0111100 0 0 01112
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ceEE
Q 015862 178 IPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD---RVGI 254 (399)
Q Consensus 178 I~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~---~v~v 254 (399)
.+..++|.++||+-|-|.+.+ -.+|...+..+++++..+.. |-. .||
T Consensus 87 --------~e~i~~ai~~GftSVMiDgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gvsVEaElG- 136 (284)
T PRK12737 87 --------LDDIKKKVRAGIRSVMIDGSH--------------------LSFEENIAIVKEVVEFCHRY-DASVEAELG- 136 (284)
T ss_pred --------HHHHHHHHHcCCCeEEecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEe-
Confidence 234588999999999999766 15788899999999999875 321 122
Q ss_pred EecCCccc-C-CC--CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC--CchhhHHHHhhcCCcEEEeCC--C
Q 015862 255 RLSPFANY-M-ES--GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE--CPHSLLPMRKAFKGTFLVAGG--Y 326 (399)
Q Consensus 255 rls~~~~~-~-~~--~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--i 326 (399)
++...++. . +. ....+.+++.++++ +.|+|.|-++-++....+...+ ..+.++.|++.+++|++.=|+ +
T Consensus 137 ~igg~e~~~~~~~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~ 213 (284)
T PRK12737 137 RLGGQEDDLVVDEKDAMYTNPDAAAEFVE---RTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGV 213 (284)
T ss_pred eccCccCCcccccccccCCCHHHHHHHHH---HhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCC
Confidence 12222211 0 00 00224566666664 5799999998877544443334 345689999999999776665 4
Q ss_pred CHHHHHHHHHcCCCcEEEechHH
Q 015862 327 DREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 327 t~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
..++..++++.|. -=|=++..+
T Consensus 214 ~~e~~~kai~~Gi-~KiNi~T~l 235 (284)
T PRK12737 214 PDEDVKKAISLGI-CKVNVATEL 235 (284)
T ss_pred CHHHHHHHHHCCC-eEEEeCcHH
Confidence 7888999999994 445555554
No 209
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.26 E-value=0.015 Score=54.20 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHh-CCCEEEE--ccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc-eEEEecCC
Q 015862 184 DFRLAARNAIEA-GFDGVEL--HGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGIRLSPF 259 (399)
Q Consensus 184 ~f~~aA~~a~~a-GfDgVeI--h~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~-v~vrls~~ 259 (399)
+=+..|+.|+|+ |-|-|++ +.-.-||+ | -..|.+++.+.-+.+.+ |.-=++.
T Consensus 77 EAv~~A~laRe~~~t~wIKLEVi~D~~~L~-----P------------------D~~etl~Aae~Lv~eGF~VlPY~~~- 132 (247)
T PF05690_consen 77 EAVRTARLAREAFGTNWIKLEVIGDDKTLL-----P------------------DPIETLKAAEILVKEGFVVLPYCTD- 132 (247)
T ss_dssp HHHHHHHHHHHTTS-SEEEE--BS-TTT-------B-------------------HHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCcC-----C------------------ChhHHHHHHHHHHHCCCEEeecCCC-
Confidence 447888899996 7777754 43332221 1 24889999999886544 4432332
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcC
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEG 338 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 338 (399)
...+|++|++.|+..+---..-.+. .....+.+.++.|++.+++|||+-.|+ +|.+|.++++-|
T Consensus 133 --------------D~v~akrL~d~GcaavMPlgsPIGS-g~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG 197 (247)
T PF05690_consen 133 --------------DPVLAKRLEDAGCAAVMPLGSPIGS-GRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG 197 (247)
T ss_dssp ---------------HHHHHHHHHTT-SEBEEBSSSTTT----SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT
T ss_pred --------------CHHHHHHHHHCCCCEEEeccccccc-CcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 1458999999998876532221111 122345678899999999999999999 999999999999
Q ss_pred CCcEEEechHHhhCCcHHH
Q 015862 339 RADLVVYGRLFLANPDLPR 357 (399)
Q Consensus 339 ~~D~V~~gR~~iadPdl~~ 357 (399)
||.|.+..+...-.|-+.
T Consensus 198 -~daVLvNTAiA~A~dPv~ 215 (247)
T PF05690_consen 198 -ADAVLVNTAIAKAKDPVA 215 (247)
T ss_dssp --SEEEESHHHHTSSSHHH
T ss_pred -CceeehhhHHhccCCHHH
Confidence 999999998876655443
No 210
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.25 E-value=0.0055 Score=60.75 Aligned_cols=123 Identities=25% Similarity=0.219 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
|......+.+.+.+.|-.+.|. | ..++++.+++. |- .+...++.
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~---------p-------------------~~~~i~~l~~~-gi-~v~~~v~s------ 145 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGL---------P-------------------PPEVIERLHAA-GI-KVIPQVTS------ 145 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSS---------C--------------------HHHHHHHHHT-T--EEEEEESS------
T ss_pred cccccccccccceEEEEeeccc---------c-------------------hHHHHHHHHHc-CC-ccccccCC------
Confidence 4445556667788899988765 2 15677777764 21 34444432
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccc-cC-CCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREE-KS-ECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRAD 341 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~-~~-~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 341 (399)
.+.++.+++.|+|.|-+.....+.... .. ....+...+++.+++||++.||| |..++..+|.-| ||
T Consensus 146 ----------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lG-A~ 214 (330)
T PF03060_consen 146 ----------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALG-AD 214 (330)
T ss_dssp ----------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT--S
T ss_pred ----------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcC-CC
Confidence 234566778899998875432211111 11 13446778999999999999999 999999999999 99
Q ss_pred EEEechHHhhCCc
Q 015862 342 LVVYGRLFLANPD 354 (399)
Q Consensus 342 ~V~~gR~~iadPd 354 (399)
.|.||..|++=++
T Consensus 215 gV~~GTrFl~t~E 227 (330)
T PF03060_consen 215 GVQMGTRFLATEE 227 (330)
T ss_dssp EEEESHHHHTSTT
T ss_pred EeecCCeEEeccc
Confidence 9999999998663
No 211
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.25 E-value=0.0075 Score=57.23 Aligned_cols=140 Identities=17% Similarity=0.080 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCc---c
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFA---N 261 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~---~ 261 (399)
.+.++++.++|+|-|-|...- + .. .++++.+-+..|.. .+++....+. .
T Consensus 86 ~e~~~~~l~~Ga~~vvigT~a----------------------~-~~----p~~~~~~~~~~g~~ivvslD~k~~g~~~~ 138 (243)
T TIGR01919 86 DSSLRAALTGGRARVNGGTAA----------------------L-EN----PWWAAAVIRYGGDIVAVGLDVLEDGEWHT 138 (243)
T ss_pred HHHHHHHHHcCCCEEEECchh----------------------h-CC----HHHHHHHHHHccccEEEEEEEecCCceEE
Confidence 566677788999999766332 0 11 33444555555654 3566553111 1
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHH--HHcC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKA--IAEG 338 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~--L~~G 338 (399)
....+|..+..+..++++.+++.|+..+-++.-..... ...++.+.++.+++.+++||+++||+ +.++..++ +...
T Consensus 139 v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt-~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~ 217 (243)
T TIGR01919 139 LGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGL-SGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEG 217 (243)
T ss_pred EECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCccc-CCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccC
Confidence 11112332333466789999999987665443221111 22356778889999999999999999 89999876 4444
Q ss_pred CCcEEEechHHhhCC
Q 015862 339 RADLVVYGRLFLANP 353 (399)
Q Consensus 339 ~~D~V~~gR~~iadP 353 (399)
.+|.|.+|+++...-
T Consensus 218 Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 218 GVSVAIGGKLLYARF 232 (243)
T ss_pred CeeEEEEhHHHHcCC
Confidence 599999999998764
No 212
>PRK08999 hypothetical protein; Provisional
Probab=97.23 E-value=0.0052 Score=60.23 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=50.3
Q ss_pred hhhhhCceEEEEeCCCcccc---cccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHH
Q 015862 280 SLNKYGILYCHMVEPRMKTR---EEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 280 ~Le~~Gvd~l~v~~~~~~~~---~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
...+.|+||+-++. .+... ...+..++.++.+++.+++||++-|||+++++..+++.| +|.|++-+++
T Consensus 241 ~a~~~~~dyi~~gp-vf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g-~~gva~i~~~ 311 (312)
T PRK08999 241 RAQRLGVDFAVLSP-VQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHG-AQGIAGIRGL 311 (312)
T ss_pred HHHhcCCCEEEECC-CcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhC-CCEEEEEEEe
Confidence 34467999998753 23211 111223456777888889999999999999999999998 9999987764
No 213
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.22 E-value=0.0022 Score=58.96 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=57.7
Q ss_pred hhhhCceEEEEeCCCcccc-cc--c-CCCchhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcH
Q 015862 281 LNKYGILYCHMVEPRMKTR-EE--K-SECPHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 281 Le~~Gvd~l~v~~~~~~~~-~~--~-~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl 355 (399)
..+.|+||+-++. .+... .. . ...++.++.+++.++ +||++.||++++++.++++.| +|+|++|++++..++.
T Consensus 120 a~~~gaD~v~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~G-a~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 120 ALAAGADYVGVGP-IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAG-ADGVAVVSAITGAEDP 197 (212)
T ss_pred HhHcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeHHhhcCCCH
Confidence 3367999998752 22111 11 1 112567888888887 999999999999999999998 9999999999988886
Q ss_pred HHHHH
Q 015862 356 PRRFE 360 (399)
Q Consensus 356 ~~k~~ 360 (399)
.+.++
T Consensus 198 ~~~~~ 202 (212)
T PRK00043 198 EAAAR 202 (212)
T ss_pred HHHHH
Confidence 54443
No 214
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.21 E-value=0.01 Score=55.15 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++.|+++|++.|- ||..| .++++..++. +...+ +
T Consensus 78 ~~~~~~a~~aGA~Fiv-------------sP~~~-----------------~~v~~~~~~~---~i~~i---P------- 114 (213)
T PRK06552 78 AVTARLAILAGAQFIV-------------SPSFN-----------------RETAKICNLY---QIPYL---P------- 114 (213)
T ss_pred HHHHHHHHHcCCCEEE-------------CCCCC-----------------HHHHHHHHHc---CCCEE---C-------
Confidence 4567889999998876 56554 7888887764 21121 1
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVV 344 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~ 344 (399)
+-.+..+ +.+. .++|+|++-+... ......+++.++..++ +|++.+||++.+.+.++++.| +|.|+
T Consensus 115 -G~~T~~E---~~~A-~~~Gad~vklFPa-------~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aG-a~~va 181 (213)
T PRK06552 115 -GCMTVTE---IVTA-LEAGSEIVKLFPG-------STLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAG-ADAVG 181 (213)
T ss_pred -CcCCHHH---HHHH-HHcCCCEEEECCc-------ccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCC-CcEEE
Confidence 1123333 2222 3689999997211 1122567888888887 999999999999999999999 99999
Q ss_pred echHHhh
Q 015862 345 YGRLFLA 351 (399)
Q Consensus 345 ~gR~~ia 351 (399)
+|..++.
T Consensus 182 vgs~l~~ 188 (213)
T PRK06552 182 IGGELNK 188 (213)
T ss_pred EchHHhC
Confidence 9999964
No 215
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.21 E-value=0.0019 Score=60.73 Aligned_cols=136 Identities=17% Similarity=0.121 Sum_probs=87.2
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCC-ccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPF-ANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~-~~~ 262 (399)
.+.|+++.++|+|-|-|+..- -+. .++++.+.+..|++ .+++.+... .-+
T Consensus 85 ~ed~~~ll~~Ga~~Vvigt~~-----------------------~~~----~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 85 IEDAERLLDAGADRVVIGTEA-----------------------LED----PELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp HHHHHHHHHTT-SEEEESHHH-----------------------HHC----CHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred HHHHHHHHHhCCCEEEeChHH-----------------------hhc----hhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 566788889999998877432 111 24566667777775 356655432 111
Q ss_pred CCCCCCCh-HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 015862 263 MESGDSNP-EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRA 340 (399)
Q Consensus 263 ~~~~~~~~-~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 340 (399)
.. +|... .-+..++++.+.+.|+..+-++.-..... ...++.+.++.+++.++.||+++||+ +.++..++.+.| +
T Consensus 138 ~~-gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt-~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G-~ 214 (229)
T PF00977_consen 138 TN-GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGT-MQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG-I 214 (229)
T ss_dssp ET-TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTT-SSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT-E
T ss_pred ec-CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCC-cCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC-C
Confidence 11 22211 12356688889999987665543211111 12345678889999999999999999 899999999888 8
Q ss_pred cEEEechHHhh
Q 015862 341 DLVVYGRLFLA 351 (399)
Q Consensus 341 D~V~~gR~~ia 351 (399)
|.|.+|+++..
T Consensus 215 ~gvivg~al~~ 225 (229)
T PF00977_consen 215 DGVIVGSALHE 225 (229)
T ss_dssp CEEEESHHHHT
T ss_pred cEEEEehHhhC
Confidence 99999999864
No 216
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.20 E-value=0.013 Score=54.09 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=41.5
Q ss_pred chhhHHHHhhcC--CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 306 PHSLLPMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 306 ~~~~~~ir~~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
++.++.+++.++ +|+++.||++++.+.++++.| +|.|+++++++..
T Consensus 138 ~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aG-a~~vav~s~l~~~ 185 (206)
T PRK09140 138 PAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAG-AAGFGLGSALYRP 185 (206)
T ss_pred HHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCC-CeEEEEehHhccc
Confidence 567888888883 999999999999999999999 9999999999864
No 217
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.19 E-value=0.0022 Score=64.22 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF 316 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~ 316 (399)
-+-|+.+|+..+ -||.||=-. +.+ -++.+.+.|+|.|.|+...-.+....++....+.++++++
T Consensus 213 W~di~wlr~~~~-~PiivKgV~-----------~~~----dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av 276 (367)
T PLN02493 213 WKDVQWLQTITK-LPILVKGVL-----------TGE----DARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKAT 276 (367)
T ss_pred HHHHHHHHhccC-CCEEeecCC-----------CHH----HHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHh
Confidence 467889998764 377776432 123 3556678899999987542212222222345566677776
Q ss_pred C--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 317 K--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 317 ~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
. +||++.||| +..++.++|.-| +|+|++||+++.
T Consensus 277 ~~~~~vi~dGGIr~G~Dv~KALALG-A~aV~iGr~~l~ 313 (367)
T PLN02493 277 QGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 313 (367)
T ss_pred CCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 4 899999999 899999999999 999999999983
No 218
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.18 E-value=0.0087 Score=57.60 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=73.8
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE
Q 015862 218 VNDRTDQYGGS--LENRCRFA---LEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM 291 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~---~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v 291 (399)
.|||-+-+..- ..|...++ .+-++.+|+.+++. .|+|-.+ +.+++. ...+.|+|||-+
T Consensus 145 ~~HR~~L~d~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~------------s~eea~----~A~~~gaDyI~l 208 (268)
T cd01572 145 DNHRFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVE------------TLEQLK----EALEAGADIIML 208 (268)
T ss_pred ccccCCCcceeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEEC------------CHHHHH----HHHHcCCCEEEE
Confidence 46777666642 45665554 56788999999865 5666443 233332 334679999987
Q ss_pred eCCCcccccccCCCchhhHHHHhhc--CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 292 VEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
.. + ..+.++++.+.. ++|+.+.||||++.+.++.+.| +|+|+++....
T Consensus 209 d~--~--------~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~G-vd~Iav~sl~~ 258 (268)
T cd01572 209 DN--M--------SPEELREAVALLKGRVLLEASGGITLENIRAYAETG-VDYISVGALTH 258 (268)
T ss_pred CC--c--------CHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEEeeec
Confidence 32 1 234555555555 4899999999999999999998 99999998765
No 219
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.18 E-value=0.064 Score=52.04 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=88.2
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE---ecCCccc-C
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR---LSPFANY-M 263 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr---ls~~~~~-~ 263 (399)
..++|.++||+-|-|.+.+ -++|...+..+|+++..+.. |- .|-.- +...++. .
T Consensus 89 ~i~~ai~~GftSVM~DgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv-sVEaElG~vgg~e~~~~ 146 (284)
T PRK12857 89 QVMKCIRNGFTSVMIDGSK--------------------LPLEENIALTKKVVEIAHAV-GV-SVEAELGKIGGTEDDIT 146 (284)
T ss_pred HHHHHHHcCCCeEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEeeecCCccCCCC
Confidence 4567788999999998766 15788899999999998853 32 12222 2222211 0
Q ss_pred CCC---CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCC--CchhhHHHHhhcCCcEEEeCC--CCHHHHHHHHH
Q 015862 264 ESG---DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSE--CPHSLLPMRKAFKGTFLVAGG--YDREDGNKAIA 336 (399)
Q Consensus 264 ~~~---~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L~ 336 (399)
... ...+.+++.+++ ++.|+|.|-++-++....+...+ ..+.++.|++.+++|++.=|+ +..++..++++
T Consensus 147 ~~~~~~~~T~pe~a~~Fv---~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~ 223 (284)
T PRK12857 147 VDEREAAMTDPEEARRFV---EETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAIS 223 (284)
T ss_pred cccchhhcCCHHHHHHHH---HHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH
Confidence 000 022455566565 46799999988777544443333 445788999999999776554 57888999999
Q ss_pred cCCCcEEEechHH
Q 015862 337 EGRADLVVYGRLF 349 (399)
Q Consensus 337 ~G~~D~V~~gR~~ 349 (399)
.|.+- |=++..+
T Consensus 224 ~Gi~K-iNi~T~~ 235 (284)
T PRK12857 224 LGVRK-VNIDTNI 235 (284)
T ss_pred cCCeE-EEeCcHH
Confidence 99443 4444443
No 220
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.011 Score=53.85 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=40.8
Q ss_pred CchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHH
Q 015862 305 CPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRR 358 (399)
Q Consensus 305 ~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k 358 (399)
...+++.+.+ .+.+||+-|+| ||+.|.++++-| ++.|.+|-+ +.+|....+
T Consensus 169 Df~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G-a~aVvVGsA-ITRp~~It~ 220 (229)
T COG3010 169 DFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG-ADAVVVGSA-ITRPEEITQ 220 (229)
T ss_pred cHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC-CeEEEECcc-cCCHHHHHH
Confidence 3445666666 68999999999 999999999999 999999965 567754443
No 221
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.17 E-value=0.0065 Score=58.06 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhh----------hHHHHHHHHHHHHHhCCCce
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENR----------CRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR----------~r~~~eii~avR~~vg~~~v 252 (399)
+.+.+.++.+.++|+|.|||-... ++---| |.-+.+- ++-++++++.+|+.-..-||
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGiPf-----------SDP~AD--GpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pi 90 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGIPF-----------SDPVAD--GPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPI 90 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE--S-----------SSCTTS--SHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC-----------CCCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCE
Confidence 567888899999999999997643 333333 3333322 34578899999954333354
Q ss_pred EEEe--cC-----Cccc---------CCC-CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------c--
Q 015862 253 GIRL--SP-----FANY---------MES-GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------E-- 300 (399)
Q Consensus 253 ~vrl--s~-----~~~~---------~~~-~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~-- 300 (399)
.+-. |+ .+.| .+. --+.+.++...+.+.+.+.|++.|.+..++.... |
T Consensus 91 vlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 91 VLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp EEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred EEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 3321 11 0001 010 1133556667777778888888887766532110 0
Q ss_pred -----cc--CC----CchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 301 -----EK--SE----CPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 301 -----~~--~~----~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
.+ .. ..+.++.+|+..+.||+++=|+ |+++++++. .+ +|.|.+|.+++.
T Consensus 171 s~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~-aDGvIVGSa~v~ 231 (259)
T PF00290_consen 171 SRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG-ADGVIVGSAFVK 231 (259)
T ss_dssp SSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT-SSEEEESHHHHH
T ss_pred ccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc-CCEEEECHHHHH
Confidence 00 01 1246788999999999888889 899999998 55 999999998764
No 222
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.15 E-value=0.0095 Score=57.24 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=70.7
Q ss_pred ccCCCCCCCCc--hhhhhHH---HHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE
Q 015862 218 VNDRTDQYGGS--LENRCRF---ALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM 291 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~---~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v 291 (399)
.|||.+-++.- ..|...+ ..+-++++|+.+|++ .|++-.+ +.+++ ....+.|+|||-+
T Consensus 141 ~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~------------t~eea----~~A~~~gaDyI~l 204 (265)
T TIGR00078 141 DNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVE------------SLEEA----EEAAEAGADIIML 204 (265)
T ss_pred cccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeC------------CHHHH----HHHHHcCCCEEEE
Confidence 46666665542 3455444 346688999999865 5666443 23432 2334689999987
Q ss_pred eCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 292 VEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
..- ..+.++++.+.++ +|+.+.||+|++.+.++.+.| +|+|++|...-
T Consensus 205 d~~----------~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~G-vd~Isvgait~ 254 (265)
T TIGR00078 205 DNM----------KPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETG-VDVISSGALTH 254 (265)
T ss_pred CCC----------CHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcC-CCEEEeCHHHc
Confidence 321 1234444444443 799999999999999999999 99999965544
No 223
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.12 E-value=0.0066 Score=57.17 Aligned_cols=142 Identities=19% Similarity=0.074 Sum_probs=83.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCCcccC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPFANYM 263 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~~~~~ 263 (399)
...++.|++.|+|+|++..-.|++.+. +..-..+-+.+|++.+... ++.+-.-+....
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-------------------~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~- 138 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-------------------NEDEVIEEIAAVVEECHKYGLKVILEPYLRGEE- 138 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-------------------HHHHHHHHHHHHHHHHHTSEEEEEEEECECHHH-
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-------------------cHHHHHHHHHHHHHHHhcCCcEEEEEEecCchh-
Confidence 677889999999999988766554331 2345566777777777433 343332221100
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc----EEEeCCC-------CHHHHH
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT----FLVAGGY-------DREDGN 332 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p----vi~~Ggi-------t~~~a~ 332 (399)
.......+.....++...+.|+|||-.+.+.. ...........+++-+..++| |.++||+ +.+++.
T Consensus 139 -~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 139 -VADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp -BSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred -hcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 00111333456677777889999999876621 111111122333444445688 9999997 367788
Q ss_pred HHHHcCCC--cEEEechHHhh
Q 015862 333 KAIAEGRA--DLVVYGRLFLA 351 (399)
Q Consensus 333 ~~L~~G~~--D~V~~gR~~ia 351 (399)
++++.| + =.++.||.++.
T Consensus 216 ~~i~aG-a~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 216 EFIEAG-ADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHTT-HSEEEEEEHHHHHT
T ss_pred HHHHcC-ChhHHHHHHHHHHc
Confidence 888998 8 56777777653
No 224
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.12 E-value=0.0079 Score=58.09 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 236 ALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 236 ~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+.+-++.+|+.+|+. .|++-.+ +.+++. ...+.|+|||-+.. -..+.++++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~------------tleea~----~A~~~gaDyI~lD~----------~~~e~l~~~~~ 227 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETE------------TEEQVR----EAVAAGADIIMFDN----------RTPDEIREFVK 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeC------------CHHHHH----HHHHcCCCEEEECC----------CCHHHHHHHHH
Confidence 467888999999865 4666433 234332 23468999997621 12355666666
Q ss_pred hcC--CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 315 AFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 315 ~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
.++ +|+.+.||||++.+.++++.| +|+|++|....
T Consensus 228 ~~~~~i~i~AiGGIt~~ni~~~a~~G-vd~IAvg~l~~ 264 (277)
T PRK08072 228 LVPSAIVTEASGGITLENLPAYGGTG-VDYISLGFLTH 264 (277)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhc
Confidence 554 667799999999999999999 99999999776
No 225
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.007 Score=56.13 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=90.1
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc--eEEEe--cC----
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR--VGIRL--SP---- 258 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~--v~vrl--s~---- 258 (399)
+-+++...+|+|-|-||.+- ..| .++|+.+-+..|..- |+|.- ..
T Consensus 87 eD~~~ll~aGADKVSINsaA----------v~~-----------------p~lI~~~a~~FGsQciVvaIDakr~~~g~~ 139 (256)
T COG0107 87 EDARKLLRAGADKVSINSAA----------VKD-----------------PELITEAADRFGSQCIVVAIDAKRVPDGEN 139 (256)
T ss_pred HHHHHHHHcCCCeeeeChhH----------hcC-----------------hHHHHHHHHHhCCceEEEEEEeeeccCCCC
Confidence 33457788999999999654 111 468888889999873 44422 11
Q ss_pred --CcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHH
Q 015862 259 --FANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAI 335 (399)
Q Consensus 259 --~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L 335 (399)
++-+...+...+--+++++++..++.|+--|-+..=.... .......+..+.+++.+++|||++||. +++...+++
T Consensus 140 ~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DG-tk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf 218 (256)
T COG0107 140 GWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDG-TKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAF 218 (256)
T ss_pred CcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccc-cccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHH
Confidence 0111111222233447889999999997765443111110 122345778999999999999999999 999999999
Q ss_pred HcCCCcEEEechHH
Q 015862 336 AEGRADLVVYGRLF 349 (399)
Q Consensus 336 ~~G~~D~V~~gR~~ 349 (399)
.+|.+|.+..+.-|
T Consensus 219 ~~~~adAaLAAsiF 232 (256)
T COG0107 219 TEGKADAALAASIF 232 (256)
T ss_pred HhcCccHHHhhhhh
Confidence 99999976655443
No 226
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.09 E-value=0.016 Score=55.02 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC--C-ceEEEecCCc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA--D-RVGIRLSPFA 260 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~--~-~v~vrls~~~ 260 (399)
++.+.+++..++|++||.|--.. ..+|....|+..-=...-..+.|+++|++... + +|..|.-...
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~-----------~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~ 153 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQV-----------GPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL 153 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC-----------CCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh
Confidence 45666778888999999995432 22333333432111233445666677766653 5 6777864421
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCH--HHHHHHHHcC
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDR--EDGNKAIAEG 338 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~--~~a~~~L~~G 338 (399)
. +....+++++.++...++|+|.+-+..+. ..+.++.+.+..+.||+.+-.-.. -..+++-+-|
T Consensus 154 --~---~~~~~~eai~Ra~ay~~AGAD~v~v~~~~---------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG 219 (243)
T cd00377 154 --A---GEEGLDEAIERAKAYAEAGADGIFVEGLK---------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELG 219 (243)
T ss_pred --c---cCCCHHHHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCC
Confidence 0 11357889999999999999998875442 346777788888899766532111 2344444456
Q ss_pred CCcEEEechHHh
Q 015862 339 RADLVVYGRLFL 350 (399)
Q Consensus 339 ~~D~V~~gR~~i 350 (399)
+.+|.++-.++
T Consensus 220 -~~~v~~~~~~~ 230 (243)
T cd00377 220 -VRRVSYGLALL 230 (243)
T ss_pred -CeEEEEChHHH
Confidence 89999876543
No 227
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.09 E-value=0.069 Score=51.56 Aligned_cols=135 Identities=19% Similarity=0.179 Sum_probs=88.1
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE---EecCCcccC--
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI---RLSPFANYM-- 263 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v---rls~~~~~~-- 263 (399)
.++|.++||+-|-|.+.+ =++|...+..+++++..+.. |- .|-. ++...++..
T Consensus 85 i~~ai~~GftSVMiD~S~--------------------l~~eeNi~~t~~vv~~ah~~-gv-~VEaElG~i~g~e~~~~~ 142 (276)
T cd00947 85 IKRAIRAGFSSVMIDGSH--------------------LPFEENVAKTKEVVELAHAY-GV-SVEAELGRIGGEEDGVVG 142 (276)
T ss_pred HHHHHHhCCCEEEeCCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEEEEeeecCccCCccc
Confidence 346678999999998765 14788899999999999886 21 1222 122222110
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc-CC--CchhhHHHHhhcCCcEEEeCC--CCHHHHHHHHHcC
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK-SE--CPHSLLPMRKAFKGTFLVAGG--YDREDGNKAIAEG 338 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~-~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L~~G 338 (399)
......+.+++.++++ +.|+|+|-++-++....+.. .+ ..+.+++|++.+++|++.=|+ +..++..++++.|
T Consensus 143 ~~~~~T~pe~a~~Fv~---~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~G 219 (276)
T cd00947 143 DEGLLTDPEEAEEFVE---ETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLG 219 (276)
T ss_pred ccccCCCHHHHHHHHH---HHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 0001224555666654 46999999988775444433 33 456789999999999776655 4678899999999
Q ss_pred CCcEEEechHH
Q 015862 339 RADLVVYGRLF 349 (399)
Q Consensus 339 ~~D~V~~gR~~ 349 (399)
+-=|=++..+
T Consensus 220 -i~KiNi~T~l 229 (276)
T cd00947 220 -VCKININTDL 229 (276)
T ss_pred -CeEEEeChHH
Confidence 4445555544
No 228
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=97.09 E-value=0.013 Score=57.88 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCccc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~ 262 (399)
+++++.|+.+.+.||..++|+.+. + .-.+.+++||++++ + +.+|+-++.
T Consensus 131 ~~~~~~~~~~~~~G~~~~KlKv~~----------------~-----------~d~~~v~avr~~~~-~-~~l~vDaN~-- 179 (321)
T PRK15129 131 EQMANSASALWQAGAKLLKVKLDN----------------H-----------LISERMVAIRSAVP-D-ATLIVDANE-- 179 (321)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC----------------c-----------hHHHHHHHHHHhCC-C-CeEEEECCC--
Confidence 345666777778999999998521 0 12488999999995 4 444444432
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRAD 341 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 341 (399)
..+.+++..+++.|++.++.|++ +|... ......+.+ ..++||++...+ ++.++..+. +.+|
T Consensus 180 -----~w~~~~A~~~~~~l~~~~i~~iE--qP~~~------~~~~~l~~~--~~~~pia~dEs~~~~~d~~~~~--~~~d 242 (321)
T PRK15129 180 -----SWRAEGLAARCQLLADLGVAMLE--QPLPA------QDDAALENF--IHPLPICADESCHTRSSLKALK--GRYE 242 (321)
T ss_pred -----CCCHHHHHHHHHHHHhcCceEEE--CCCCC------CcHHHHHHh--ccCCCEecCCCCCCHHHHHHHH--hhCC
Confidence 33567789999999999999988 54211 111111111 135777776666 677766653 4466
Q ss_pred EEEe
Q 015862 342 LVVY 345 (399)
Q Consensus 342 ~V~~ 345 (399)
+|-+
T Consensus 243 ~v~~ 246 (321)
T PRK15129 243 MVNI 246 (321)
T ss_pred EEEe
Confidence 5443
No 229
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.07 E-value=0.022 Score=51.81 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=48.6
Q ss_pred hhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 282 NKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 282 e~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
.+.|+||+-+.. ......++++.+++.++ +|+++.||+|++.+.++++.| +|.|+++..+.
T Consensus 114 ~~~Gad~i~~~p-------~~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G-~~~v~v~s~i~ 175 (190)
T cd00452 114 LELGADIVKLFP-------AEAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAG-VVAVGGGSLLP 175 (190)
T ss_pred HHCCCCEEEEcC-------CcccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCC-CEEEEEchhcc
Confidence 356888887621 01114567788888774 999999999999999999999 99999999987
No 230
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.04 E-value=0.038 Score=54.04 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=85.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE---EecCCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI---RLSPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v---rls~~~~~ 262 (399)
.+..++|.++||+-|-+.+.| -++|...+..+++++-.+.. |- .|-. ++...++.
T Consensus 87 ~e~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~~-gv-~VEaElG~vgg~ed~ 144 (307)
T PRK05835 87 FESCEKAVKAGFTSVMIDASH--------------------HAFEENLELTSKVVKMAHNA-GV-SVEAELGRLMGIEDN 144 (307)
T ss_pred HHHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEecccCCccCC
Confidence 344677999999999998765 14677888999999988754 21 1222 22222221
Q ss_pred -CCCC---CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccc--cCC--CchhhHHHHhhcCCcEEEeCCC--CHH---
Q 015862 263 -MESG---DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREE--KSE--CPHSLLPMRKAFKGTFLVAGGY--DRE--- 329 (399)
Q Consensus 263 -~~~~---~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~--~~~--~~~~~~~ir~~~~~pvi~~Ggi--t~~--- 329 (399)
.... ...+.+++.+++ ++.|+|+|-++-++....+. ..+ ..+.++.|++.+++|++.=|+= ..+
T Consensus 145 ~~~~~~~~~~TdPeeA~~Fv---~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~ 221 (307)
T PRK05835 145 ISVDEKDAVLVNPKEAEQFV---KESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRK 221 (307)
T ss_pred cccccccccCCCHHHHHHHH---HhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhh
Confidence 0000 022345555555 46799999998777544443 223 4567888999999998766654 333
Q ss_pred ------------------HHHHHHHcCCCcEEEechH
Q 015862 330 ------------------DGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 330 ------------------~a~~~L~~G~~D~V~~gR~ 348 (399)
+..++++.|.+- |=++..
T Consensus 222 ~~~~~g~~~~~~~g~~~e~~~kai~~GI~K-iNi~T~ 257 (307)
T PRK05835 222 SYLDAGGDLKGSKGVPFEFLQESVKGGINK-VNTDTD 257 (307)
T ss_pred hhhhhccccccccCCCHHHHHHHHHcCceE-EEeChH
Confidence 788888888433 444443
No 231
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.03 E-value=0.02 Score=53.22 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=42.9
Q ss_pred hHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 309 LLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 309 ~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
.+.+++..+ .+++.+||| ++++|.++.+.| +|.|..|--+-.||+-..++-+
T Consensus 182 ~e~v~~v~~~~~LivGGGIrs~E~A~~~a~ag-AD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 182 VEMVSRVLSDTPLIVGGGIRSPEQAREMAEAG-ADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred HHHHHHhhccceEEEcCCcCCHHHHHHHHHcC-CCEEEECceeecCHHHHHHHHH
Confidence 344555554 389999999 999999999998 9999999999999977666544
No 232
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.02 E-value=0.0062 Score=57.25 Aligned_cols=59 Identities=22% Similarity=0.408 Sum_probs=50.6
Q ss_pred cCCCchhhHHHHhhcCC-cEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCc-HHHHHHh
Q 015862 302 KSECPHSLLPMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPD-LPRRFEL 361 (399)
Q Consensus 302 ~~~~~~~~~~ir~~~~~-pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPd-l~~k~~~ 361 (399)
.+.+.+.++.+++.++. |++++||+ +++++++++..| +|.|.+|-.+..||+ .++.+++
T Consensus 168 ~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G-AD~VVVGSai~~d~~~~~~~~~~ 229 (232)
T PRK04169 168 DPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG-ADTIVVGNIIEEDPKKTVKAIKK 229 (232)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEChHHhhCHHHHHHHHHh
Confidence 34456789999999998 99999999 899999999998 999999999999998 4444443
No 233
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.01 E-value=0.018 Score=54.27 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCCcccC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPFANYM 263 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~~~~~ 263 (399)
.+.++++.++|+|-|-|...- | . . .+.++.+-+..|++ .+++.+.......
T Consensus 85 ~e~~~~~l~~Ga~kvvigt~a------~----~-------------~----p~~~~~~~~~~g~~~ivvslD~~~~~~v~ 137 (232)
T PRK13586 85 IEKAKRLLSLDVNALVFSTIV------F----T-------------N----FNLFHDIVREIGSNRVLVSIDYDNTKRVL 137 (232)
T ss_pred HHHHHHHHHCCCCEEEECchh------h----C-------------C----HHHHHHHHHHhCCCCEEEEEEcCCCCEEE
Confidence 345566777999999765322 0 0 1 36677777788765 3566662111111
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
..+|..+..+..++++.|++.|+.-+-++.-..... ...++.+.++.+++. ..|++++||+ +.++..++.+.| +|.
T Consensus 138 ~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt-~~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G-~~g 214 (232)
T PRK13586 138 IRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGT-TKGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVG-FDY 214 (232)
T ss_pred ccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccccc-CcCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC-CCE
Confidence 112222222356789999999976544332111111 123456677777765 6679999999 899999988877 999
Q ss_pred EEechHHhh
Q 015862 343 VVYGRLFLA 351 (399)
Q Consensus 343 V~~gR~~ia 351 (399)
|.+|+++..
T Consensus 215 vivg~Aly~ 223 (232)
T PRK13586 215 IIVGMAFYL 223 (232)
T ss_pred EEEehhhhc
Confidence 999999874
No 234
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.01 E-value=0.016 Score=55.88 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=71.0
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE
Q 015862 218 VNDRTDQYGGS--LENRCRFA---LEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM 291 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~---~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v 291 (399)
.|||.+-+..- ..|...+. .+-++++|+.++++ .|+|-.. +.+++.+. .+.|+|||-+
T Consensus 144 ~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~------------t~eea~~A----~~~gaD~I~l 207 (269)
T cd01568 144 DNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVE------------TLEEAEEA----LEAGADIIML 207 (269)
T ss_pred ccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecC------------CHHHHHHH----HHcCCCEEEE
Confidence 56777665542 44555543 25688999998854 4665332 23443332 3468999987
Q ss_pred eCCCcccccccCCCchhhHHHHhhc----CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 292 VEPRMKTREEKSECPHSLLPMRKAF----KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ir~~~----~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
..- ..+.++.+.+.+ ++|+.+.||+|++.+.++.+.| +|+|++|....+-|
T Consensus 208 d~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~G-ad~Isvgal~~s~~ 262 (269)
T cd01568 208 DNM----------SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETG-VDVISTGALTHSAP 262 (269)
T ss_pred CCC----------CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEcHHHcCCC
Confidence 321 112333333333 6799999999999999999999 99999987666654
No 235
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.00 E-value=0.02 Score=53.87 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCCcccC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPFANYM 263 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~~~~~ 263 (399)
.+.+..+..+|++-|-|...- +.| .++.++++.. |.. .+++.+... ...
T Consensus 90 ~edv~~~l~~Ga~~viigt~~----------------------~~~--~~~~~~~~~~----~~~~iivslD~~~~-~~~ 140 (233)
T cd04723 90 LENAQEWLKRGASRVIVGTET----------------------LPS--DDDEDRLAAL----GEQRLVLSLDFRGG-QLL 140 (233)
T ss_pred HHHHHHHHHcCCCeEEEccee----------------------ccc--hHHHHHHHhc----CCCCeEEEEeccCC-eec
Confidence 455566778899988765332 112 3555555555 443 355554321 110
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 342 (399)
......+..++++.+++. ++.+++..-..... ...++.+.++.+.+.+++||+++||+ ++++++++++.| +|.
T Consensus 141 ---~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~-~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~ 214 (233)
T cd04723 141 ---KPTDFIGPEELLRRLAKW-PEELIVLDIDRVGS-GQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLG-ASG 214 (233)
T ss_pred ---cccCcCCHHHHHHHHHHh-CCeEEEEEcCcccc-CCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCE
Confidence 001112245577778777 77777654322111 22345677888888889999999999 899999999998 999
Q ss_pred EEechHHhhC
Q 015862 343 VVYGRLFLAN 352 (399)
Q Consensus 343 V~~gR~~iad 352 (399)
|.+|+++...
T Consensus 215 vivGsal~~g 224 (233)
T cd04723 215 ALVASALHDG 224 (233)
T ss_pred EEEehHHHcC
Confidence 9999999875
No 236
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.98 E-value=0.016 Score=55.40 Aligned_cols=139 Identities=10% Similarity=-0.024 Sum_probs=88.9
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCCcc---
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPFAN--- 261 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~~~--- 261 (399)
+.++++.++|+|-|-|...- ..| ..+-.++++.+-+..|++ .+++.....+.
T Consensus 95 e~i~~~l~~Ga~rViigT~A----------v~~-------------~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~ 151 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYV----------FRD-------------GQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYY 151 (262)
T ss_pred HHHHHHHHcCCCEEEEchHH----------HhC-------------CCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEE
Confidence 56678889999999987432 011 112256677777777766 34554431111
Q ss_pred cCCCCCCC-hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcC-
Q 015862 262 YMESGDSN-PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEG- 338 (399)
Q Consensus 262 ~~~~~~~~-~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G- 338 (399)
..-.+|.. +.-+..+++..+.+.|+..+-++.-....+ ...++.+.++.+.+.+++||+++||+ +.++..++.+.|
T Consensus 152 Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGt-l~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~ 230 (262)
T PLN02446 152 VVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGK-RLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGG 230 (262)
T ss_pred EEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCc-ccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 11112322 222345677777788877665543211111 12346778889999999999999999 899999988875
Q ss_pred CCcEEEechHH
Q 015862 339 RADLVVYGRLF 349 (399)
Q Consensus 339 ~~D~V~~gR~~ 349 (399)
.+..|.+||++
T Consensus 231 g~~gvIvGkAl 241 (262)
T PLN02446 231 GRVDVTVGSAL 241 (262)
T ss_pred CCEEEEEEeeH
Confidence 46789999998
No 237
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.93 E-value=0.014 Score=54.88 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=80.1
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~ 269 (399)
+.+.++|.|.|-+|+-.+ ...+.+.++++|+. | -.++|-+++. .
T Consensus 82 ~~~~~~Gad~itvH~ea~-------------------------~~~~~~~l~~ik~~-G-~~~gval~p~---------t 125 (228)
T PTZ00170 82 DDFAKAGASQFTFHIEAT-------------------------EDDPKAVARKIREA-G-MKVGVAIKPK---------T 125 (228)
T ss_pred HHHHHcCCCEEEEeccCC-------------------------chHHHHHHHHHHHC-C-CeEEEEECCC---------C
Confidence 455678999999997641 01156778888774 3 2578877762 2
Q ss_pred hHHHHHHHHHhhhhhCceEE---EEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEe
Q 015862 270 PEALGLYMAESLNKYGILYC---HMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l---~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~ 345 (399)
+.++..++. ....+|++ .++.+..++.. .+...+-++.+|+..+ ..+.+.||++++.+..+++.| +|.+.+
T Consensus 126 ~~e~l~~~l---~~~~vD~Vl~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aG-ad~iVv 200 (228)
T PTZ00170 126 PVEVLFPLI---DTDLVDMVLVMTVEPGFGGQSF-MHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAG-ANVIVA 200 (228)
T ss_pred CHHHHHHHH---ccchhhhHHhhhcccCCCCcEe-cHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcC-CCEEEE
Confidence 445443332 11224544 33322211111 1111234455666554 457788999999999999998 999999
Q ss_pred chHHhhCCcHHHHH
Q 015862 346 GRLFLANPDLPRRF 359 (399)
Q Consensus 346 gR~~iadPdl~~k~ 359 (399)
||+++..+|+.+.+
T Consensus 201 GsaI~~a~d~~~~~ 214 (228)
T PTZ00170 201 GSSIFKAKDRKQAI 214 (228)
T ss_pred chHHhCCCCHHHHH
Confidence 99999888864444
No 238
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.90 E-value=0.0032 Score=58.86 Aligned_cols=81 Identities=17% Similarity=0.059 Sum_probs=64.3
Q ss_pred HHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHH--cCCCcEEEechHHhh
Q 015862 275 LYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIA--EGRADLVVYGRLFLA 351 (399)
Q Consensus 275 ~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~--~G~~D~V~~gR~~ia 351 (399)
.++++.+.+.|++.+|+..-.. ......+.+.++.+.+.+ |+...||+ |.+++++++. ++ +|-|.+|...+.
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~--~~~~~~n~~~i~~i~~~~--~v~vgGGirs~e~~~~~~~~l~~-a~rvvigT~a~~ 113 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDR--IVGLGDNFSLLSKLSKRV--ELIADCGVRSPEDLETLPFTLEF-ASRVVVATETLD 113 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEccc--ccCCcchHHHHHHHHhhC--cEEEcCccCCHHHHHHHHhhhcc-ceEEeecChhhC
Confidence 4578888899999999864322 123344566777787764 89999999 8999999876 46 999999999999
Q ss_pred CCcHHHHHH
Q 015862 352 NPDLPRRFE 360 (399)
Q Consensus 352 dPdl~~k~~ 360 (399)
||+|.+++.
T Consensus 114 ~p~~l~~~~ 122 (221)
T TIGR00734 114 ITELLRECY 122 (221)
T ss_pred CHHHHHHhh
Confidence 999999875
No 239
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.89 E-value=0.017 Score=54.89 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=86.3
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCC-cc--
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPF-AN-- 261 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~-~~-- 261 (399)
+.++...++|+|.|-|...- -+......+.++++.+..|++ .+++..... +.
T Consensus 88 e~v~~~l~aGa~rVvIGS~a-----------------------v~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~ 144 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWL-----------------------FTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRW 144 (253)
T ss_pred HHHHHHHHcCCCEEEECcHH-----------------------HhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcE
Confidence 55677788999999986321 001112257888888898876 355554310 11
Q ss_pred -cCCCCCCC-hHHHHH-HHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHH--H
Q 015862 262 -YMESGDSN-PEALGL-YMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKA--I 335 (399)
Q Consensus 262 -~~~~~~~~-~~~~~~-~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~--L 335 (399)
..-.+|.. +.-+.. ++++.+++. +..+-++.-....+ ...++.+..+.+.+.+++||+++||+ +.++..++ +
T Consensus 145 ~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGt-l~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~ 222 (253)
T TIGR02129 145 IVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGL-CKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDEL 222 (253)
T ss_pred EEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCc-cccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHh
Confidence 11112222 111234 678888777 66655443221111 22356788899999999999999999 89999887 4
Q ss_pred HcCCCcEEEechHHhh
Q 015862 336 AEGRADLVVYGRLFLA 351 (399)
Q Consensus 336 ~~G~~D~V~~gR~~ia 351 (399)
..|.++ +.+|++++.
T Consensus 223 ~~g~~~-aIvG~Alf~ 237 (253)
T TIGR02129 223 SKGKVD-LTIGSALDI 237 (253)
T ss_pred cCCCCc-EEeeehHHH
Confidence 445444 899999875
No 240
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.89 E-value=0.0032 Score=66.30 Aligned_cols=88 Identities=15% Similarity=0.014 Sum_probs=68.8
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcc--cccccCCCchhhHHHHhhcCCcEEEeCCC-CH-----------HHHHHHHHcCC
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMK--TREEKSECPHSLLPMRKAFKGTFLVAGGY-DR-----------EDGNKAIAEGR 339 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~--~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~-----------~~a~~~L~~G~ 339 (399)
-.++++...+.|+|.||+..-+.. ......+..+.++++.+.+.+|+.++||| |. ++++++|..|
T Consensus 269 Pve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G- 347 (538)
T PLN02617 269 PVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG- 347 (538)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC-
Confidence 466899999999999987543221 11122234667888888899999999999 76 7799999999
Q ss_pred CcEEEechHHhhCC------------cHHHHHHhC
Q 015862 340 ADLVVYGRLFLANP------------DLPRRFELN 362 (399)
Q Consensus 340 ~D~V~~gR~~iadP------------dl~~k~~~g 362 (399)
||-|+++..++.|| ++++++.+.
T Consensus 348 adkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 348 ADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred CCEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 99999999999975 888887764
No 241
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.88 E-value=0.019 Score=54.75 Aligned_cols=127 Identities=21% Similarity=0.196 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+..|+.|.+.|+|-|++-.-.|.|.+ .+...+.+-|.+|+++++.. +.+|+=...
T Consensus 86 ~~Ea~~Ai~~GAdEiD~Vinig~lk~-------------------g~~~~v~~ei~~v~~~~~~~-~~lKVIlEt----- 140 (257)
T PRK05283 86 LAETRAAIAYGADEVDVVFPYRALMA-------------------GNEQVGFELVKACKEACAAN-VLLKVIIET----- 140 (257)
T ss_pred HHHHHHHHHcCCCEEeeeccHHHHhC-------------------CcHHHHHHHHHHHHHHhCCC-ceEEEEEec-----
Confidence 55567788999999998876665443 24567888899999988732 233332110
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-------CCcEEEeCCC-CHHHHHHHHHc
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-------KGTFLVAGGY-DREDGNKAIAE 337 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-------~~pvi~~Ggi-t~~~a~~~L~~ 337 (399)
+.-...++-...++...++|+|||--+.+.. ......+.++.+++.+ ++-|=++||| |.++|..+|+.
T Consensus 141 ~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a 216 (257)
T PRK05283 141 GELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL 216 (257)
T ss_pred cccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH
Confidence 0011222356678888899999998766532 1234455666666665 2447789999 99999999998
Q ss_pred CCCcE
Q 015862 338 GRADL 342 (399)
Q Consensus 338 G~~D~ 342 (399)
| -+.
T Consensus 217 g-~~~ 220 (257)
T PRK05283 217 A-DEI 220 (257)
T ss_pred H-HHH
Confidence 8 443
No 242
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.86 E-value=0.015 Score=69.20 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
++++.|+.+++.||..++|..|.+ .+ ...-.++|++||+++|++ +.+|+-++.
T Consensus 1093 ~~~~~a~~~~~~Gf~~~KlKvG~~-------------------~~----~~~D~~~i~alRe~~G~~-~~LrlDAN~--- 1145 (1655)
T PLN02980 1093 EVAYVARKLVEEGFSAIKLKVGRR-------------------VS----PIQDAAVIQEVRKAVGYQ-IELRADANR--- 1145 (1655)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCC-------------------CC----HHHHHHHHHHHHHHcCCC-CeEEEECCC---
Confidence 355667777889999999987541 01 123478999999999975 334443321
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHH-----HHHHHHHc
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DRE-----DGNKAIAE 337 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~-----~a~~~L~~ 337 (399)
..+.++++++++.|++.++.||+ +|.. ..+....+++.+++||++...+ +.. .+..+++.
T Consensus 1146 ----~ws~~~A~~~~~~L~~~~i~~iE--qPl~--------~~~~l~~l~~~~~iPIA~DEs~~~~~~~~~~~~~~~i~~ 1211 (1655)
T PLN02980 1146 ----NWTYEEAIEFGSLVKSCNLKYIE--EPVQ--------DEDDLIKFCEETGLPVALDETIDKFEECPLRMLTKYTHP 1211 (1655)
T ss_pred ----CCCHHHHHHHHHHHhhcCCCEEE--CCCC--------CHHHHHHHHHhCCCCEEeCCCcCCcccchHHHHHHHHHC
Confidence 34678899999999999999988 5521 2345566777777887776665 443 24555555
Q ss_pred CCCc
Q 015862 338 GRAD 341 (399)
Q Consensus 338 G~~D 341 (399)
+ ++
T Consensus 1212 ~-~~ 1214 (1655)
T PLN02980 1212 G-IV 1214 (1655)
T ss_pred C-Ce
Confidence 5 44
No 243
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.06 Score=50.03 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHh-CCCEE--EEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCc
Q 015862 184 DFRLAARNAIEA-GFDGV--ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260 (399)
Q Consensus 184 ~f~~aA~~a~~a-GfDgV--eIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~ 260 (399)
+=+..|+.|+|+ |-|-| |+++.+-||+- | ..|.+++.+.-|.+.++.+ ++.
T Consensus 84 EAv~tArlARE~~~t~wiKlEVi~d~~tLlP-----------D------------~~etl~Aae~Lv~eGF~Vl---PY~ 137 (262)
T COG2022 84 EAVRTARLAREALGTNWIKLEVIGDEKTLLP-----------D------------PIETLKAAEQLVKEGFVVL---PYT 137 (262)
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCcccCC-----------C------------hHHHHHHHHHHHhCCCEEe---ecc
Confidence 347778888885 45554 77766655542 1 3788999988887654322 210
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--ccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHc
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--EKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAE 337 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~ 337 (399)
.++ .-+|++|++.|+..+- |...+.. ....+.+.++.|++..++|||+--|+ +|.+|.++++-
T Consensus 138 ------~dD-----~v~arrLee~GcaavM---Pl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl 203 (262)
T COG2022 138 ------TDD-----PVLARRLEEAGCAAVM---PLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL 203 (262)
T ss_pred ------CCC-----HHHHHHHHhcCceEec---cccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc
Confidence 122 3489999999987653 2111111 23346678899999999999999999 99999999999
Q ss_pred CCCcEEEechHHhhCCcH
Q 015862 338 GRADLVVYGRLFLANPDL 355 (399)
Q Consensus 338 G~~D~V~~gR~~iadPdl 355 (399)
| ||.|.+-.+.-.--|-
T Consensus 204 G-~DaVL~NTAiA~A~DP 220 (262)
T COG2022 204 G-ADAVLLNTAIARAKDP 220 (262)
T ss_pred c-cceeehhhHhhccCCh
Confidence 9 9999998876544433
No 244
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=96.81 E-value=0.14 Score=50.94 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEe---cCCccc--
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRL---SPFANY-- 262 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrl---s~~~~~-- 262 (399)
..++|.++||+-|-|.+.| | | +++-+-++|...+..+++++..+.. |- .|-.-| ...+..
T Consensus 90 ~i~~Ai~~GFtSVMiDgS~-------l-~-----~~~~~~~~eeNI~~Trevve~Ah~~-Gv-sVEaELG~igg~e~~~~ 154 (347)
T PRK13399 90 TCQSAIRSGFTSVMMDGSL-------L-A-----DGKTPASYDYNVDVTRRVTEMAHAV-GV-SVEGELGCLGSLETGEA 154 (347)
T ss_pred HHHHHHhcCCCEEEEeCCC-------C-C-----CCCCccCHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeccCcccccc
Confidence 3588899999999999876 1 1 1222346899999999999997653 32 122222 211100
Q ss_pred ---CCC---------CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc---C----CCchhhHHHHhhc-CCcEEE
Q 015862 263 ---MES---------GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK---S----ECPHSLLPMRKAF-KGTFLV 322 (399)
Q Consensus 263 ---~~~---------~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~---~----~~~~~~~~ir~~~-~~pvi~ 322 (399)
.+. ....+.+++.+|++ +.|+|.|-++-++....+.. + -..+.++.|++.+ ++|++.
T Consensus 155 g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVL 231 (347)
T PRK13399 155 GEEDGVGAEGKLSHDQMLTDPDQAVDFVQ---RTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVM 231 (347)
T ss_pred cccCCccccccccccccCCCHHHHHHHHH---HHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEE
Confidence 000 00223555666654 57999998877764433322 1 2345788999999 699776
Q ss_pred eCCC--C---------------------HHHHHHHHHcCCCc
Q 015862 323 AGGY--D---------------------REDGNKAIAEGRAD 341 (399)
Q Consensus 323 ~Ggi--t---------------------~~~a~~~L~~G~~D 341 (399)
=|+= . .++..++++.|.+-
T Consensus 232 HGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~K 273 (347)
T PRK13399 232 HGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRK 273 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeE
Confidence 6653 3 47789999998543
No 245
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.81 E-value=0.047 Score=53.50 Aligned_cols=135 Identities=20% Similarity=0.129 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHh-CCCEE--EEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc-eEEEecCC
Q 015862 184 DFRLAARNAIEA-GFDGV--ELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGIRLSPF 259 (399)
Q Consensus 184 ~f~~aA~~a~~a-GfDgV--eIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~-v~vrls~~ 259 (399)
+=+..|+.|+|+ |-|-| ||++-+-||+. -+.+.+++.++.+.+.+ +.+=.+.
T Consensus 151 eAv~~a~lare~~~~~~iKlEvi~e~~~llp-----------------------d~~~~v~aa~~L~~~Gf~v~~yc~~- 206 (326)
T PRK11840 151 EAVRTLRLAREAGGWDLVKLEVLGDAKTLYP-----------------------DMVETLKATEILVKEGFQVMVYCSD- 206 (326)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCccc-----------------------CHHHHHHHHHHHHHCCCEEEEEeCC-
Confidence 347788888886 66766 55544432221 24788899988886554 3332222
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEE-eCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHc
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHM-VEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAE 337 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v-~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~ 337 (399)
....|++|++.|+..+.- .++ .+ ......+++.++.+.+..++||++.+|| +++++.++++-
T Consensus 207 --------------d~~~a~~l~~~g~~avmPl~~p-IG-sg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel 270 (326)
T PRK11840 207 --------------DPIAAKRLEDAGAVAVMPLGAP-IG-SGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL 270 (326)
T ss_pred --------------CHHHHHHHHhcCCEEEeecccc-cc-CCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc
Confidence 134688888889844332 111 11 1112236678888888889999999999 89999999999
Q ss_pred CCCcEEEechHHhhCCcHHHHH
Q 015862 338 GRADLVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 338 G~~D~V~~gR~~iadPdl~~k~ 359 (399)
| +|.|.+..+...-+|.+.-.
T Consensus 271 G-adgVL~nSaIa~a~dPv~Ma 291 (326)
T PRK11840 271 G-CDGVLMNTAIAEAKNPVLMA 291 (326)
T ss_pred C-CCEEEEcceeccCCCHHHHH
Confidence 9 99999999998777766543
No 246
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=96.76 E-value=0.026 Score=55.83 Aligned_cols=105 Identities=13% Similarity=0.050 Sum_probs=72.1
Q ss_pred hCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHH
Q 015862 195 AGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALG 274 (399)
Q Consensus 195 aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~ 274 (399)
.||..++|+.|.+ + ...-.+.|++||++++ + +.+|+-.+. ..+.+++
T Consensus 127 ~Gf~~~KvKvG~~--------------------~----~~~d~~~i~~vr~~~~-~-~~l~vDaN~-------~w~~~~A 173 (322)
T PRK05105 127 PGEKVAKVKVGLY--------------------E----AVRDGMLVNLLLEAIP-D-LKLRLDANR-------GWTLEKA 173 (322)
T ss_pred CCCCEEEEEECCC--------------------C----HHHHHHHHHHHHHhCC-C-CeEEEECCC-------CCCHHHH
Confidence 7999999987541 1 1234789999999984 4 344444321 3357889
Q ss_pred HHHHHhhhh---hCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEE
Q 015862 275 LYMAESLNK---YGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 344 (399)
Q Consensus 275 ~~l~~~Le~---~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 344 (399)
+++++.|++ .++.|++ +|. +..+..+.+++.+++||++...+ +++ ....+ .+.+|.|.
T Consensus 174 ~~~~~~l~~~~~~~i~~iE--qP~--------~~~~~~~~l~~~~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ 235 (322)
T PRK05105 174 QQFAKYVPPDYRHRIAFLE--EPC--------KTPDDSRAFARATGIAIAWDESLREPD-FQFEA-EPGVRAIV 235 (322)
T ss_pred HHHHHHhhhhcCCCccEEE--CCC--------CCHHHHHHHHHhCCCCEEECCCCCchh-hhhhh-cCCCCEEE
Confidence 999999998 8899888 442 11234577889999999888887 765 33444 45588664
No 247
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.73 E-value=0.098 Score=50.88 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEec---CCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS---PFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls---~~~~~ 262 (399)
.+..++|.++||+-|-|.+.+ -++|...+..+++++-.+.. |- .|-.-|. ..++.
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vv~~ah~~-gv-~VEaElG~i~g~ed~ 143 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSA--------------------LPFEENIAITREVVEYAHAY-GV-SVEAELGHIGGKEDG 143 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TT--------------------S-HHHHHHHHHHHHHHHHHT-T--EEEEEESBSSSSCTT
T ss_pred HHHHHHHHHhCcccccccCCc--------------------CCHHHHHHHHHHHHHhhhhh-CC-EEEEEeeeeeccCCC
Confidence 455577888899999988664 25788899999999999874 21 2333222 21111
Q ss_pred -CC----CCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc--CCC--chhhHHHHhhc-CCcEEEeCC--CCHHH
Q 015862 263 -ME----SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK--SEC--PHSLLPMRKAF-KGTFLVAGG--YDRED 330 (399)
Q Consensus 263 -~~----~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~--~~~--~~~~~~ir~~~-~~pvi~~Gg--it~~~ 330 (399)
.. .....+.+++.+++ ++.|+|.|-++-++....+.. .+. .+.+++|++.+ ++|++.=|+ +..++
T Consensus 144 ~~~~~~~~~~~TdP~~a~~Fv---~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~ 220 (287)
T PF01116_consen 144 IESEEETESLYTDPEEAKEFV---EETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQ 220 (287)
T ss_dssp CSSSTT-TTCSSSHHHHHHHH---HHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHH
T ss_pred ccccccccccccCHHHHHHHH---HHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHH
Confidence 10 01122345555554 567999999988875545544 343 45789999999 999877665 46789
Q ss_pred HHHHHHcCCCcEEEechHHh
Q 015862 331 GNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 331 a~~~L~~G~~D~V~~gR~~i 350 (399)
..++++.| +-=|=++..+.
T Consensus 221 ~~~ai~~G-i~KiNi~T~~~ 239 (287)
T PF01116_consen 221 IRKAIKNG-ISKINIGTELR 239 (287)
T ss_dssp HHHHHHTT-EEEEEESHHHH
T ss_pred HHHHHHcC-ceEEEEehHHH
Confidence 99999999 44455555443
No 248
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.70 E-value=0.023 Score=59.90 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCCc---
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPFA--- 260 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~~--- 260 (399)
.+.|++..++|+|-|=|+..-=.=..+|+.. +-... .++|+.+-+..|.. .|+|...-..
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~-----------~~~~~----p~~i~~~~~~fg~q~ivvsiD~k~~~~~~ 401 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIAS-----------GVKTG----KTSIEQISRVYGNQAVVVSIDPRRVYVKD 401 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhcc-----------ccccC----HHHHHHHHHHcCCceEEEEEecCcCcccC
Confidence 3668888999999999986531111122210 01111 46677777777876 2455432100
Q ss_pred ----------------c--------cCCCCCC-ChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh
Q 015862 261 ----------------N--------YMESGDS-NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA 315 (399)
Q Consensus 261 ----------------~--------~~~~~~~-~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~ 315 (399)
. ..-.+|. .+.-+..++++.+++.|+.-|-++.-....+ ...++.+.++.+++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt-~~G~d~~l~~~v~~~ 480 (538)
T PLN02617 402 PSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQ-GKGFDIELVKLVSDA 480 (538)
T ss_pred ccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccc-ccCcCHHHHHHHHhh
Confidence 0 0000111 1223467899999999987665432211111 223467788999999
Q ss_pred cCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 316 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 316 ~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
+++|||++||. ++++..++++.+.+|.+..|.-|-
T Consensus 481 ~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh 516 (538)
T PLN02617 481 VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFH 516 (538)
T ss_pred CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeec
Confidence 99999999999 899999999988799887775443
No 249
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.035 Score=51.44 Aligned_cols=137 Identities=18% Similarity=0.287 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE
Q 015862 175 TDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI 254 (399)
Q Consensus 175 ~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v 254 (399)
.+..+..+++| .++|+|.|=+|.=. ..-+.++|+.||+. |- ..++
T Consensus 70 V~~p~~~i~~f-------a~agad~It~H~E~--------------------------~~~~~r~i~~Ik~~-G~-kaGv 114 (220)
T COG0036 70 VENPDRYIEAF-------AKAGADIITFHAEA--------------------------TEHIHRTIQLIKEL-GV-KAGL 114 (220)
T ss_pred cCCHHHHHHHH-------HHhCCCEEEEEecc--------------------------CcCHHHHHHHHHHc-CC-eEEE
Confidence 45557777777 46899999999531 12457889999886 32 5688
Q ss_pred EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe--CCCcccccccCCCchhhHHHHhhcC---Cc-EEEeCCCCH
Q 015862 255 RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV--EPRMKTREEKSECPHSLLPMRKAFK---GT-FLVAGGYDR 328 (399)
Q Consensus 255 rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~ir~~~~---~p-vi~~Ggit~ 328 (399)
=++| ..+++....+... +|++-+- .|.++....-+...+-++.+|+..+ .. +-+-||++.
T Consensus 115 ~lnP---------~Tp~~~i~~~l~~-----vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~ 180 (220)
T COG0036 115 VLNP---------ATPLEALEPVLDD-----VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL 180 (220)
T ss_pred EECC---------CCCHHHHHHHHhh-----CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH
Confidence 7887 3355544444432 5665442 2333211111112234455555554 22 556799999
Q ss_pred HHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 329 EDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 329 ~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
+.+.++.+.| +|.+..|++++.++|+...+++
T Consensus 181 ~t~~~~~~AG-ad~~VaGSalF~~~d~~~~i~~ 212 (220)
T COG0036 181 ETIKQLAAAG-ADVFVAGSALFGADDYKATIRE 212 (220)
T ss_pred HHHHHHHHcC-CCEEEEEEEEeCCccHHHHHHH
Confidence 9999999999 9999999999999998777765
No 250
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.66 E-value=0.026 Score=54.51 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=67.0
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe
Q 015862 218 VNDRTDQYGGS--LENRCRFA---LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV 292 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~---~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~ 292 (399)
.|||-+-+.+- ..|-.++. .+-++++|+..+...|+|-.. +.++. ....+.|+|||-+.
T Consensus 153 ~~HR~~L~d~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~------------tleea----~eA~~~gaD~I~LD 216 (277)
T PRK05742 153 HNHRIGLYDAFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVE------------SLDEL----RQALAAGADIVMLD 216 (277)
T ss_pred ccccCCCcccEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeC------------CHHHH----HHHHHcCCCEEEEC
Confidence 34555444442 23333332 344677777653225665432 23332 23346789999762
Q ss_pred CCCcccccccCCCchhhHHHHhhc--CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 293 EPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
.+ .++.++++.+.. ++|+.+.||+|++.+.++.+.| +|+|++|.....-|
T Consensus 217 --~~--------~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tG-vD~Isvg~lt~s~~ 268 (277)
T PRK05742 217 --EL--------SLDDMREAVRLTAGRAKLEASGGINESTLRVIAETG-VDYISIGAMTKDVK 268 (277)
T ss_pred --CC--------CHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEChhhcCCc
Confidence 11 223444444444 6899999999999999999998 99999998665544
No 251
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.66 E-value=0.17 Score=50.24 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE
Q 015862 175 TDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI 254 (399)
Q Consensus 175 ~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v 254 (399)
.+.|.+.++.=.+...++.++||+-|-|.+.| =++|...++.+++++..+.. |- .|-.
T Consensus 107 ~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~--------------------lpfEeNI~~TkevVe~Ah~~-Gv-sVEa 164 (350)
T PRK09197 107 LPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE--------------------EPLEENIEICSKYLERMAKA-GM-TLEI 164 (350)
T ss_pred hHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEE
Confidence 56777777776677777888889999988765 25788899999999988753 32 2222
Q ss_pred ---EecCCcccC--CCC----CCChHHHHHHHHHhhh-hhCceEEEEeCCCcccccc-cCC--CchhhHHHHhhc-----
Q 015862 255 ---RLSPFANYM--ESG----DSNPEALGLYMAESLN-KYGILYCHMVEPRMKTREE-KSE--CPHSLLPMRKAF----- 316 (399)
Q Consensus 255 ---rls~~~~~~--~~~----~~~~~~~~~~l~~~Le-~~Gvd~l~v~~~~~~~~~~-~~~--~~~~~~~ir~~~----- 316 (399)
++...++.. ... ...+.+++.++++... ..|+|.|-++-++....|. ..+ ..+.++.|++.+
T Consensus 165 ELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~ 244 (350)
T PRK09197 165 ELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFG 244 (350)
T ss_pred EEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhC
Confidence 232222211 000 0235666777776432 1234999988777544443 223 445788899998
Q ss_pred ----CCcEEEeCC--CCHHHHHHHHHcCCCc
Q 015862 317 ----KGTFLVAGG--YDREDGNKAIAEGRAD 341 (399)
Q Consensus 317 ----~~pvi~~Gg--it~~~a~~~L~~G~~D 341 (399)
++|++.=|+ ++.++..++++.|.+-
T Consensus 245 ~~~~~vPLVLHGgSGipde~i~~ai~~GI~K 275 (350)
T PRK09197 245 LPAKPFDFVFHGGSGSTLEEIREAVSYGVVK 275 (350)
T ss_pred CCCCCCCEEEeCCCCCCHHHHHHHHHCCCee
Confidence 799776665 5789999999999543
No 252
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.66 E-value=0.037 Score=51.68 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=43.8
Q ss_pred hhHHHHhhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 308 SLLPMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 308 ~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
..+.+|+.. ++||++.|++ +++++..+++.| +|.|.+|++++.-+++...++
T Consensus 163 ~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g-adGvlVGsa~l~~~~~~~~~~ 216 (223)
T PRK04302 163 AVEAVKKVNPDVKVLCGAGISTGEDVKAALELG-ADGVLLASGVVKAKDPEAALR 216 (223)
T ss_pred HHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC-CCEEEEehHHhCCcCHHHHHH
Confidence 445577754 5899999999 899999999888 999999999999888876654
No 253
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.65 E-value=0.12 Score=49.30 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCc--------hhhh--hHHHHHHHHHHHHHhCCCce
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGS--------LENR--CRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGs--------lenR--~r~~~eii~avR~~vg~~~v 252 (399)
+...+.++.+.++|.|.+||-... ++-=-| |-. |.+. .+-.+|+++.+|+.-..-|+
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPf-----------SDPvAD--GP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pi 97 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPF-----------SDPVAD--GPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPI 97 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCC-----------CCcCcc--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCE
Confidence 456777888899999999986543 322222 322 2222 24578999999976322243
Q ss_pred EE--EecC-----Cccc---------CCC-CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-------------c--
Q 015862 253 GI--RLSP-----FANY---------MES-GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-------------E-- 300 (399)
Q Consensus 253 ~v--rls~-----~~~~---------~~~-~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-------------~-- 300 (399)
.+ =.|+ .+.| .+. --+.+.++...+.+..++.|+++|-+..|+.... |
T Consensus 98 vlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~v 177 (265)
T COG0159 98 VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYV 177 (265)
T ss_pred EEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 22 1122 0010 010 1244677788888888999999998876653210 0
Q ss_pred -----cc--CC----CchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 301 -----EK--SE----CPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 301 -----~~--~~----~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
.. .+ ..+.++.+|+..++||+++=|+ ++++++++++. +|.|.+|.+++
T Consensus 178 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV 237 (265)
T COG0159 178 SRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV 237 (265)
T ss_pred ecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence 00 11 2346788999999999888889 89999999998 99999999865
No 254
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.63 E-value=0.052 Score=54.01 Aligned_cols=147 Identities=17% Similarity=0.120 Sum_probs=80.9
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhh-hHHHHHHHHHHHHHhCCCceEEEe-cCCcccCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENR-CRFALEIVEAVSNEIGADRVGIRL-SPFANYMES 265 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR-~r~~~eii~avR~~vg~~~v~vrl-s~~~~~~~~ 265 (399)
.++++++.|+|+|.++.-. +.|. ...++++ .+++.+|.+++++. | -|+.+-+ .. ....+.
T Consensus 111 sve~a~~~GAdAVk~lv~~--------------~~d~-~~~~~~~~~~~l~rv~~ec~~~-g-iPlllE~l~y-~~~~~~ 172 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYY--------------RPDE-DDAINDRKHAFVERVGAECRAN-D-IPFFLEPLTY-DGKGSD 172 (340)
T ss_pred cHHHHHHcCCCEEEEEEEe--------------CCCc-chHHHHHHHHHHHHHHHHHHHc-C-CceEEEEecc-CCCccc
Confidence 3566899999999998543 2221 1112333 33566666666654 1 1544432 21 110000
Q ss_pred CCC-----ChHHHHHHHHHhhh--hhCceEEEEeCCCccccccc-------CCCc---hhhHHHHhhcCCc-EEEeCCCC
Q 015862 266 GDS-----NPEALGLYMAESLN--KYGILYCHMVEPRMKTREEK-------SECP---HSLLPMRKAFKGT-FLVAGGYD 327 (399)
Q Consensus 266 ~~~-----~~~~~~~~l~~~Le--~~Gvd~l~v~~~~~~~~~~~-------~~~~---~~~~~ir~~~~~p-vi~~Ggit 327 (399)
... ...+.....++.+. ++|+|++-+.-+........ +... ...+.+.+..++| |+.+|+.+
T Consensus 173 ~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~ 252 (340)
T PRK12858 173 KKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVS 252 (340)
T ss_pred cccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCC
Confidence 001 23455667788887 49999998754421100000 0111 3345556667888 45577775
Q ss_pred HH----HHHHHHHcCCC--cEEEechHHhhCC
Q 015862 328 RE----DGNKAIAEGRA--DLVVYGRLFLANP 353 (399)
Q Consensus 328 ~~----~a~~~L~~G~~--D~V~~gR~~iadP 353 (399)
.+ ..+.+++.| + -.|.+||....++
T Consensus 253 ~~~f~~~l~~A~~aG-a~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 253 PELFRRTLEFACEAG-ADFSGVLCGRATWQDG 283 (340)
T ss_pred HHHHHHHHHHHHHcC-CCccchhhhHHHHhhh
Confidence 44 455677777 7 8999999988765
No 255
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.63 E-value=0.031 Score=52.52 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=78.4
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC----CceEEE-ecCCc--
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA----DRVGIR-LSPFA-- 260 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~----~~v~vr-ls~~~-- 260 (399)
.+..+.++|+|.|=+|+..| .+.++++.++..+ ..++|- ++...
T Consensus 72 ~i~~~~~~gad~itvH~~ag-----------------------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~ 122 (230)
T PRK00230 72 AVRALAKLGVDMVNVHASGG-----------------------------PRMMKAAREALEPKSRPLLIAVTVLTSMDEE 122 (230)
T ss_pred HHHHHHHcCCCEEEEcccCC-----------------------------HHHHHHHHHHhhccCCCeEEEEEECCCCCHH
Confidence 44556789999999997653 4555555554321 145554 33321
Q ss_pred ccCCCCCCChH-HHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCCCHH---------
Q 015862 261 NYMESGDSNPE-ALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGYDRE--------- 329 (399)
Q Consensus 261 ~~~~~~~~~~~-~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~--------- 329 (399)
++...+...+. +....+++...+.|+|.+-++. ...+.+|+.++ ..+..++|+.++
T Consensus 123 ~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~-------------~~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~ 189 (230)
T PRK00230 123 DLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSA-------------QEAAAIREATGPDFLLVTPGIRPAGSDAGDQKR 189 (230)
T ss_pred HHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeCh-------------HHHHHHHhhcCCceEEEcCCcCCCCCCcchHHH
Confidence 11111122222 2344566666778888765431 12456777664 345666777544
Q ss_pred --HHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 330 --DGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 330 --~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
+..++++.| +|+|.+||+.+..+|-...++
T Consensus 190 ~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 190 VMTPAQAIAAG-SDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred HhCHHHHHHcC-CCEEEECCcccCCCCHHHHHH
Confidence 577888877 999999999999888766554
No 256
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.60 E-value=0.18 Score=50.09 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=85.7
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ceEEEecCCccc---
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD---RVGIRLSPFANY--- 262 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~---~v~vrls~~~~~--- 262 (399)
.++|.++||+-|-|.+.| | |-.|++. ++|...+..+++++..+.. |-. .|+ ++...++.
T Consensus 91 i~~ai~~GftSVMiDgS~-------l-~~~~~~~-----p~eENI~~Tkevve~Ah~~-Gv~VEaELG-~vgg~e~~~~g 155 (347)
T PRK09196 91 CQRAIQLGFTSVMMDGSL-------K-ADGKTPA-----SYEYNVDVTRKVVEMAHAC-GVSVEGELG-CLGSLETGMGG 155 (347)
T ss_pred HHHHHHcCCCEEEecCCC-------C-cccCCCC-----CHHHHHHHHHHHHHHHHHc-CCeEEEEEe-eccCccccccc
Confidence 677999999999999876 1 1123333 5889999999999998653 421 122 12222111
Q ss_pred --CCC--C-------CCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc---C----CCchhhHHHHhhc-CCcEEEe
Q 015862 263 --MES--G-------DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK---S----ECPHSLLPMRKAF-KGTFLVA 323 (399)
Q Consensus 263 --~~~--~-------~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~---~----~~~~~~~~ir~~~-~~pvi~~ 323 (399)
.+. . ...+.+++.+|+ ++.|+|+|-++-++....+.. + -..+.+++|++.+ ++|++.=
T Consensus 156 ~~~~~~~~~~~~~~~~~T~PeeA~~Fv---~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLH 232 (347)
T PRK09196 156 EEDGHGAEGKLSHDQLLTDPEEAADFV---KKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMH 232 (347)
T ss_pred cccCcccccccchhhcCCCHHHHHHHH---HHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEe
Confidence 000 0 012345555555 467999998877664333321 1 2345788899999 6997765
Q ss_pred CC--C---------------------CHHHHHHHHHcCCCcEEEech
Q 015862 324 GG--Y---------------------DREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 324 Gg--i---------------------t~~~a~~~L~~G~~D~V~~gR 347 (399)
|+ + ..++..++++.|.+- |=++.
T Consensus 233 GgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~K-INi~T 278 (347)
T PRK09196 233 GSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRK-VNIDT 278 (347)
T ss_pred CCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCce-EEeCh
Confidence 54 3 447788999998543 44443
No 257
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.59 E-value=0.17 Score=48.27 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=116.4
Q ss_pred CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHHHHHHHc-CCeEEEecccCCCccCCCCCCCCCCCcccCCCCCC
Q 015862 76 KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAK-GGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLT 154 (399)
Q Consensus 76 g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~vh~~-g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~ 154 (399)
|.--||.|+..=-|- .. -..++.+..+..++.++.+. +.++++|+...
T Consensus 41 GvD~viveN~~d~P~------~~-~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~n------------------------ 89 (257)
T TIGR00259 41 GVDAVMFENFFDAPF------LK-EVDPETVAAMAVIAGQLKSDVSIPLGINVLRN------------------------ 89 (257)
T ss_pred CCCEEEEecCCCCCC------cC-CCCHHHHHHHHHHHHHHHHhcCCCeeeeeecC------------------------
Confidence 454577786532222 11 24678899999999988664 44677777421
Q ss_pred cccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhH
Q 015862 155 PQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCR 234 (399)
Q Consensus 155 ~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r 234 (399)
.+ ..+-..|..+|+|.|.++.-.|-.+ +| -|-++.++.
T Consensus 90 --------------d~---------------~aal~iA~a~ga~FIRv~~~~g~~~-----------~d--~G~~~~~a~ 127 (257)
T TIGR00259 90 --------------DA---------------VAALAIAMAVGAKFIRVNVLTGVYA-----------SD--QGIIEGNAG 127 (257)
T ss_pred --------------CC---------------HHHHHHHHHhCCCEEEEccEeeeEe-----------cc--cccccccHH
Confidence 01 4455678889999999875443211 22 234444443
Q ss_pred HHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhC-ceEEEEeCCCcccccccCCCchhhHHH
Q 015862 235 FALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYG-ILYCHMVEPRMKTREEKSECPHSLLPM 312 (399)
Q Consensus 235 ~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~G-vd~l~v~~~~~~~~~~~~~~~~~~~~i 312 (399)
|++ ..|+.++.+ .|.-.+... ........++++ .++.....+ .|.|-++.... .....++.++.+
T Consensus 128 ---e~~-r~r~~l~~~v~i~adV~~k--h~~~l~~~~~~e---~a~~~~~~~~aDavivtG~~T----G~~~d~~~l~~v 194 (257)
T TIGR00259 128 ---ELI-RYKKLLGSEVKILADIVVK--HAVHLGNRDLES---IALDTVERGLADAVILSGKTT----GTEVDLELLKLA 194 (257)
T ss_pred ---HHH-HHHHHcCCCcEEEeceeec--ccCcCCCCCHHH---HHHHHHHhcCCCEEEECcCCC----CCCCCHHHHHHH
Confidence 332 345566644 344333321 110111234443 344444444 88888875532 234567788889
Q ss_pred Hhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 313 RKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 313 r~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
|++. +.||+.+||+|++.+.++|+. +|.|.+|..+=.+-
T Consensus 195 r~~~~~~PvllggGvt~eNv~e~l~~--adGviVgS~~K~~G 234 (257)
T TIGR00259 195 KETVKDTPVLAGSGVNLENVEELLSI--ADGVIVATTIKKDG 234 (257)
T ss_pred HhccCCCeEEEECCCCHHHHHHHHhh--CCEEEECCCcccCC
Confidence 8866 589999999999999999996 99999999886443
No 258
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.59 E-value=0.17 Score=49.87 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=81.7
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE---EecCCcccC-
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI---RLSPFANYM- 263 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v---rls~~~~~~- 263 (399)
..++|.++||+-|-|.+.+ =++|...+..+++++..+.. |- .|-- ++...++..
T Consensus 100 ~i~~ai~~GftSVMiD~S~--------------------lp~eeNI~~T~evv~~Ah~~-Gv-sVEaElG~igg~ed~~~ 157 (321)
T PRK07084 100 LCKDCIDSGFSSVMIDGSH--------------------LPYEENVALTKKVVEYAHQF-DV-TVEGELGVLAGVEDEVS 157 (321)
T ss_pred HHHHHHHcCCCEEEeeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEEEEeeecCccCCcc
Confidence 3588899999999999766 14788899999999998853 32 1211 122222110
Q ss_pred -CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc-----C--CCchhhHHHHhhc-CCcEEEeCC---------
Q 015862 264 -ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK-----S--ECPHSLLPMRKAF-KGTFLVAGG--------- 325 (399)
Q Consensus 264 -~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~-----~--~~~~~~~~ir~~~-~~pvi~~Gg--------- 325 (399)
......+.+++.++++ +.|+|.|-++-++....+.. . -..+.++.|++.+ ++|++.=|+
T Consensus 158 ~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~ 234 (321)
T PRK07084 158 AEHHTYTQPEEVEDFVK---KTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVK 234 (321)
T ss_pred CcccccCCHHHHHHHHH---HhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHH
Confidence 0001224566666654 57999999887765444322 2 2456788999999 699664443
Q ss_pred --------------CCHHHHHHHHHcCCCc
Q 015862 326 --------------YDREDGNKAIAEGRAD 341 (399)
Q Consensus 326 --------------it~~~a~~~L~~G~~D 341 (399)
+..++..++++.|.+-
T Consensus 235 ~~~~~g~~~~~~~Gi~~e~~~kai~~GI~K 264 (321)
T PRK07084 235 TINEYGGKLKDAIGIPEEQLRKAAKSAVCK 264 (321)
T ss_pred HHHHhcCccccCCCCCHHHHHHHHHcCCce
Confidence 3457788888888443
No 259
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.59 E-value=0.027 Score=53.76 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE---ecCCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR---LSPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr---ls~~~~~ 262 (399)
.+-|+...++|+++|=|. +-.+-||||+ +-+++||+++. -||.-| +.++.-+
T Consensus 71 ~~~a~~y~~~GA~aiSVl----------------Te~~~F~Gs~--------~dL~~v~~~~~-~PvL~KDFIid~~QI~ 125 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVL----------------TEPKFFGGSL--------EDLRAVRKAVD-LPVLRKDFIIDPYQIY 125 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE------------------SCCCHHHH--------HHHHHHHHHSS-S-EEEES---SHHHHH
T ss_pred HHHHHHHHhcCCCEEEEE----------------CCCCCCCCCH--------HHHHHHHHHhC-CCcccccCCCCHHHHH
Confidence 555666688999999876 4455688984 45667777663 143332 0000000
Q ss_pred ----CCC------CCCChHHHHHHHHHhhhhhCceE-EEEeCCCc-------ccc---------cccCCCchhhHHHHhh
Q 015862 263 ----MES------GDSNPEALGLYMAESLNKYGILY-CHMVEPRM-------KTR---------EEKSECPHSLLPMRKA 315 (399)
Q Consensus 263 ----~~~------~~~~~~~~~~~l~~~Le~~Gvd~-l~v~~~~~-------~~~---------~~~~~~~~~~~~ir~~ 315 (399)
.|- -.-.+.+...++.+.....|++. ++||...- +.. ..-.-.......+...
T Consensus 126 eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ 205 (254)
T PF00218_consen 126 EARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPL 205 (254)
T ss_dssp HHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCH
T ss_pred HHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhh
Confidence 000 00112233445555556667664 45553210 000 0000112334455555
Q ss_pred cC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 316 FK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 316 ~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
++ ..+|+-+|+ |++++..+...| +|.|.+|..++..||...++++
T Consensus 206 ip~~~~~iseSGI~~~~d~~~l~~~G-~davLVGe~lm~~~d~~~~~~~ 253 (254)
T PF00218_consen 206 IPKDVIVISESGIKTPEDARRLARAG-ADAVLVGEALMRSPDPGEALRE 253 (254)
T ss_dssp SHTTSEEEEESS-SSHHHHHHHCTTT--SEEEESHHHHTSSSHHHHHHH
T ss_pred CccceeEEeecCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHhc
Confidence 54 557888899 899999999998 9999999999999999988864
No 260
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=96.58 E-value=0.015 Score=43.56 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC
Q 015862 239 IVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK 317 (399)
Q Consensus 239 ii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~ 317 (399)
.|++||+++|++ .|.+..+. ..+.++++.+++.|++ +.|++ +|. ........+.+++.++
T Consensus 1 ri~avr~~~g~~~~l~vDan~---------~~~~~~a~~~~~~l~~--~~~iE--eP~------~~~d~~~~~~l~~~~~ 61 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQ---------AWTLEEAIRLARALED--YEWIE--EPL------PPDDLDGLAELRQQTS 61 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TT---------BBSHHHHHHHHHHHGG--GSEEE--SSS------STTSHHHHHHHHHHCS
T ss_pred CHHHHHHhhCCCCeEEEECCC---------CCCHHHHHHHHHHcCh--hheee--cCC------CCCCHHHHHHHHHhCC
Confidence 478999999986 46666664 2367889999999998 47777 442 1224567888999999
Q ss_pred CcEEE
Q 015862 318 GTFLV 322 (399)
Q Consensus 318 ~pvi~ 322 (399)
+||++
T Consensus 62 ~pia~ 66 (67)
T PF01188_consen 62 VPIAA 66 (67)
T ss_dssp SEEEE
T ss_pred CCEEe
Confidence 99875
No 261
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.57 E-value=0.065 Score=49.71 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEE
Q 015862 176 DEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGI 254 (399)
Q Consensus 176 ~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~v 254 (399)
.||-..+..+++. +.++|+|.|=+|+.-| ...+...++.+++. |.. .+.+
T Consensus 59 ~Dig~t~~~~~~~---~~~~gad~vTvh~~~g-------------------------~~~l~~~~~~~~~~-~~~v~~v~ 109 (213)
T TIGR01740 59 ADIPNTVKLQYES---KIKQGADMVNVHGVAG-------------------------SESVEAAKEAASEG-GRGLLAVT 109 (213)
T ss_pred cchHHHHHHHHHH---HHhcCCCEEEEcCCCC-------------------------HHHHHHHHHHhhcC-CCeEEEEE
Confidence 3455555555555 4579999999997553 12234455554432 433 3455
Q ss_pred EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHH---H-
Q 015862 255 RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDRE---D- 330 (399)
Q Consensus 255 rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~---~- 330 (399)
.++..+... . .....+....+++...+.|++-+- + ..+.+..+|+.++..++.+.|+.++ .
T Consensus 110 ~lss~~~~~-~-~~~~~~~v~~~a~~~~~~g~~g~v-~------------~~~~~~~ir~~~~~~~~vtPGI~~~g~~~~ 174 (213)
T TIGR01740 110 ELTSMGSLD-Y-GEDTMEKVLEYAKEAKAFGLDGPV-C------------SAEEAKEIRKFTGDFLILTPGIRLQSKGAD 174 (213)
T ss_pred cCCCCChhh-h-CcCHHHHHHHHHHHhhhcCCeEEE-e------------CHHHHHHHHHhcCCceEEeCCcCCCCCCcC
Confidence 666432111 1 112335566677777777765432 1 1345667888776447788887433 2
Q ss_pred -------HHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 331 -------GNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 331 -------a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
...+++.| +|++.+||+++..+|....++
T Consensus 175 dq~~~~~~~~~~~~G-ad~iVvGr~I~~~~d~~~~~~ 210 (213)
T TIGR01740 175 DQQRVVTLEDAKEAG-ADVIIVGRGIYAAEDPVEAAK 210 (213)
T ss_pred CccccCCHHHHHHcC-CCEEEEChhhcCCCCHHHHHH
Confidence 26677787 999999999999888665554
No 262
>PRK08005 epimerase; Validated
Probab=96.51 E-value=0.045 Score=50.71 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=79.2
Q ss_pred HHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChH
Q 015862 192 AIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPE 271 (399)
Q Consensus 192 a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~ 271 (399)
..++|.|-|-+|.=. +..+.++++.||+. |- ..|+=+++. .+.
T Consensus 77 ~~~~gad~It~H~Ea--------------------------~~~~~~~l~~Ik~~-G~-k~GlAlnP~---------Tp~ 119 (210)
T PRK08005 77 LAAIRPGWIFIHAES--------------------------VQNPSEILADIRAI-GA-KAGLALNPA---------TPL 119 (210)
T ss_pred HHHhCCCEEEEcccC--------------------------ccCHHHHHHHHHHc-CC-cEEEEECCC---------CCH
Confidence 356899999999542 11346788999886 32 578888872 345
Q ss_pred HHHHHHHHhhhhhCceEEEEe--CCCcccccccCCCchhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechH
Q 015862 272 ALGLYMAESLNKYGILYCHMV--EPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 272 ~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~ 348 (399)
+....++.. +|++-+- .|.+......+...+-++++|+..+ ..+-+-||++.+.+.++.+.| +|.+.+|++
T Consensus 120 ~~i~~~l~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aG-ad~~V~Gsa 193 (210)
T PRK08005 120 LPYRYLALQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAG-AQHLVIGRA 193 (210)
T ss_pred HHHHHHHHh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCC-CCEEEEChH
Confidence 544444432 5665442 2322211111111223344444433 357788999999999999999 999999999
Q ss_pred HhhCCcHHHHHH
Q 015862 349 FLANPDLPRRFE 360 (399)
Q Consensus 349 ~iadPdl~~k~~ 360 (399)
++.++|.-+.++
T Consensus 194 iF~~~d~~~~~~ 205 (210)
T PRK08005 194 LFTTANYDVTLS 205 (210)
T ss_pred hhCCCCHHHHHH
Confidence 998888655544
No 263
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.49 E-value=0.034 Score=55.97 Aligned_cols=104 Identities=11% Similarity=0.033 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhC---ceEEEEeCCCccccccc-CCCch
Q 015862 233 CRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYG---ILYCHMVEPRMKTREEK-SECPH 307 (399)
Q Consensus 233 ~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~G---vd~l~v~~~~~~~~~~~-~~~~~ 307 (399)
.+...+.+++|| ++|++ .|.|..+.. + +..++-+.++++++++.|++.+ +.|++ +|... .. ....+
T Consensus 176 ~~~~~~~v~avr-~~G~~~~l~vDaN~~--w-~~~~~~~~~~A~~~~~~Le~~~~~~~~~iE--qP~~~---~d~~~~~~ 246 (369)
T cd03314 176 VKWLSDRIRKLG-RPGYHPILHIDVYGT--I-GQAFDPDPDRAADYLATLEEAAAPFPLRIE--GPMDA---GSREAQIE 246 (369)
T ss_pred HHHHHHHHHHHh-hcCCCCEEEEEcCCc--c-ccccCCCHHHHHHHHHHHHHhcCCCcEEEe--cCCCC---CcchhhHH
Confidence 334568899999 88887 466655431 0 0001115678999999998762 44555 44210 00 02346
Q ss_pred hhHHHHhh-----cCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 308 SLLPMRKA-----FKGTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 308 ~~~~ir~~-----~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
..+.++++ +++||++...+ +++++.++++.+.+|+|.+
T Consensus 247 ~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~ 290 (369)
T cd03314 247 RMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQI 290 (369)
T ss_pred HHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEe
Confidence 67778888 48999888887 8999999999999998876
No 264
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.45 E-value=0.056 Score=48.60 Aligned_cols=141 Identities=18% Similarity=0.119 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-C-ceEEEecCCc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA-D-RVGIRLSPFA 260 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~-~-~v~vrls~~~ 260 (399)
+.+.+.++.+.+.|.|+|.+.+ ++++.+++.++. . +|.+.++...
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------------------------------~~i~~~~~~~~~~~~~v~~~v~~~~ 59 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------------------------------GYVRLAADALAGSDVPVIVVVGFPT 59 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------------------------------HHHHHHHHHhCCCCCeEEEEecCCC
Confidence 3455666667779999999874 778888888765 4 6788877531
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccc-cCCCchhhHHHHhhc--CCcEEEe---CCC-CHHHHHH
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREE-KSECPHSLLPMRKAF--KGTFLVA---GGY-DREDGNK 333 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~ir~~~--~~pvi~~---Ggi-t~~~a~~ 333 (399)
.....+++.+.++...+.|+|.+.+..+.+..+.. .....+..+.+.+++ +.|++.- +.. +++...+
T Consensus 60 ------~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~ 133 (201)
T cd00945 60 ------GLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAK 133 (201)
T ss_pred ------CCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHH
Confidence 11235778899999999999999886553221100 111234566777774 7886643 233 5665544
Q ss_pred H---HHcCCCcEEEechHHh---hCCcHHHHHHhC
Q 015862 334 A---IAEGRADLVVYGRLFL---ANPDLPRRFELN 362 (399)
Q Consensus 334 ~---L~~G~~D~V~~gR~~i---adPdl~~k~~~g 362 (399)
+ +++-.+|+|-...+.. .|.+...++++-
T Consensus 134 ~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~ 168 (201)
T cd00945 134 AARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEA 168 (201)
T ss_pred HHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 3 3444599998766533 255566666653
No 265
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.44 E-value=0.2 Score=49.74 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ceEEEecCCccc-
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD---RVGIRLSPFANY- 262 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~---~v~vrls~~~~~- 262 (399)
+..++|.++||+-|-|.+.+ .+ .++-.-++|...+..+++++..+.. |-. .|+ ++...+..
T Consensus 87 e~i~~Ai~~GFtSVMiDgS~-----------l~--~~~~~~p~eENI~~Tkevve~Ah~~-GvsVEaELG-~igg~e~~~ 151 (347)
T TIGR01521 87 ATCQRAIQLGFTSVMMDGSL-----------RE--DAKTPADYDYNVRVTAEVVAFAHAV-GASVEGELG-CLGSLETGM 151 (347)
T ss_pred HHHHHHHHcCCCEEeecCcC-----------Cc--ccCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEee-ecccccccc
Confidence 34678899999999999776 11 1222346888999999999988763 211 122 12211100
Q ss_pred ----CC--C-------CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc---C----CCchhhHHHHhhc-CCcEE
Q 015862 263 ----ME--S-------GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK---S----ECPHSLLPMRKAF-KGTFL 321 (399)
Q Consensus 263 ----~~--~-------~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~---~----~~~~~~~~ir~~~-~~pvi 321 (399)
.+ . ....+.+++.+|+ ++.|||.|-++-++....+.. + -..+.+++|++.+ ++|++
T Consensus 152 ~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv---~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLV 228 (347)
T TIGR01521 152 GEAEDGHGFEGVLDHSQLLTDPEEAADFV---KKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLV 228 (347)
T ss_pred cccccCcccccccchhhcCCCHHHHHHHH---HHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEE
Confidence 00 0 0012345555555 457999998877764433322 1 2345678899999 69977
Q ss_pred EeCCC--C---------------------HHHHHHHHHcCCCc
Q 015862 322 VAGGY--D---------------------REDGNKAIAEGRAD 341 (399)
Q Consensus 322 ~~Ggi--t---------------------~~~a~~~L~~G~~D 341 (399)
.=|+= . .++..++++.|.+-
T Consensus 229 LHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~K 271 (347)
T TIGR01521 229 MHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRK 271 (347)
T ss_pred EeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCee
Confidence 66653 2 47888999998543
No 266
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.44 E-value=0.018 Score=53.78 Aligned_cols=75 Identities=15% Similarity=0.032 Sum_probs=53.6
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
..++.+.+.+.|+.++-..-.+.+. ...+..+.++.+++.+++||+++||+ +++++.++.+.| +|.|.+|+++..
T Consensus 143 ~~~~~~~~~~~g~~ii~tdI~~dGt--~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G-a~~vivgsal~~ 218 (221)
T TIGR00734 143 LEEVRDFLNSFDYGLIVLDIHSVGT--MKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMG-VSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHHHhcCCEEEEEECCcccc--CCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEhHHhhC
Confidence 3445566666665433322111111 22346778899999999999999999 899999988887 999999999864
No 267
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.41 E-value=0.011 Score=53.87 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=50.7
Q ss_pred hhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 015862 282 NKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 282 e~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
.+.|+||+-+ -++ ....-.++++.++..+ ++|+++.||+|++.+.++++.| +|.|+++++++.
T Consensus 122 ~~~Gadyv~~-Fpt-----~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aG-a~~vav~s~i~~ 185 (187)
T PRK07455 122 WQAGASCVKV-FPV-----QAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAG-AIAVGLSGQLFP 185 (187)
T ss_pred HHCCCCEEEE-CcC-----CcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCC-CeEEEEehhccc
Confidence 3579999987 221 1112357888999988 4999999999999999999998 999999998764
No 268
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.41 E-value=0.064 Score=51.69 Aligned_cols=129 Identities=20% Similarity=0.199 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR 251 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~ 251 (399)
.+..+.+.++++. ..+.|.|||-+.+.-| +|. -=+.+.|.+++..+++.+. +.-+
T Consensus 14 ~iD~~~~~~~i~~-------l~~~Gv~gi~~~GstG----E~~-----------~ls~~Er~~l~~~~~~~~~---~~~~ 68 (281)
T cd00408 14 EVDLDALRRLVEF-------LIEAGVDGLVVLGTTG----EAP-----------TLTDEERKEVIEAVVEAVA---GRVP 68 (281)
T ss_pred CcCHHHHHHHHHH-------HHHcCCCEEEECCCCc----ccc-----------cCCHHHHHHHHHHHHHHhC---CCCe
Confidence 4555555555554 4567999999886654 111 2356777766555555543 2225
Q ss_pred eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE------eCC
Q 015862 252 VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV------AGG 325 (399)
Q Consensus 252 v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~Gg 325 (399)
|.+=++. .+.++++++++..++.|+|.+-+..|.+... .......+.+.|.+++++|++. +|.
T Consensus 69 vi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~ 137 (281)
T cd00408 69 VIAGVGA----------NSTREAIELARHAEEAGADGVLVVPPYYNKP-SQEGIVAHFKAVADASDLPVILYNIPGRTGV 137 (281)
T ss_pred EEEecCC----------ccHHHHHHHHHHHHHcCCCEEEECCCcCCCC-CHHHHHHHHHHHHhcCCCCEEEEECccccCC
Confidence 5554443 2456789999999999999999877755431 1112334566677778888763 343
Q ss_pred -CCHHHHHHHHH
Q 015862 326 -YDREDGNKAIA 336 (399)
Q Consensus 326 -it~~~a~~~L~ 336 (399)
++++...++.+
T Consensus 138 ~l~~~~~~~L~~ 149 (281)
T cd00408 138 DLSPETIARLAE 149 (281)
T ss_pred CCCHHHHHHHhc
Confidence 37888888875
No 269
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.04 Score=52.93 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.-+|+.++++||.+|-+.++. .=- .. -..| +|- -. ..-+++.++.|-+++. -||.|.+-.
T Consensus 28 ~~sA~la~~aGF~al~~sg~~-vA~-sl------G~pD--~~~-~t-~~e~~~~vrrI~~a~~-lPv~vD~dt------- 87 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAG-VAA-SL------GLPD--LGI-TT-LDEVLADARRITDAVD-LPVLVDIDT------- 87 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHH-HHH-hc------CCCc--ccc-cc-HHHHHHHHHHHHhhcC-CceEEeccC-------
Confidence 567899999999999976543 111 11 1122 111 11 1233444455555542 278887643
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc------ccCCCchhhHHHHhhc---C-CcEEEe--------CCC-
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE------EKSECPHSLLPMRKAF---K-GTFLVA--------GGY- 326 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~------~~~~~~~~~~~ir~~~---~-~pvi~~--------Ggi- 326 (399)
|.++ .....+.++.|+++|+.-+|+-.-.....- .-.+..+.+.+||.++ + .+++.+ |++
T Consensus 88 GfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld 166 (289)
T COG2513 88 GFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLD 166 (289)
T ss_pred CCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHH
Confidence 2244 455777888999999999998544322110 1112234455555443 2 233333 444
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 327 -DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 327 -t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
+.+.++.+++.| +|+|.. +.+.+++...++.+..+
T Consensus 167 ~AI~Ra~AY~eAG-AD~if~--~al~~~e~i~~f~~av~ 202 (289)
T COG2513 167 DAIERAQAYVEAG-ADAIFP--EALTDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHHHcC-CcEEcc--ccCCCHHHHHHHHHhcC
Confidence 356788889998 998887 88899999999998876
No 270
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.36 E-value=0.035 Score=55.50 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEec
Q 015862 180 QIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLS 257 (399)
Q Consensus 180 ~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls 257 (399)
.+|+.|++ ++.+-|-|-+.|.-+- |..|=+..-++++++.-+.. .+++-+|
T Consensus 98 DvVe~Fv~---ka~~nGidvfRiFDAl------------------------ND~RNl~~ai~a~kk~G~h~q~~i~YT~s 150 (472)
T COG5016 98 DVVEKFVE---KAAENGIDVFRIFDAL------------------------NDVRNLKTAIKAAKKHGAHVQGTISYTTS 150 (472)
T ss_pred HHHHHHHH---HHHhcCCcEEEechhc------------------------cchhHHHHHHHHHHhcCceeEEEEEeccC
Confidence 57777764 5678999999987543 44555566666776643322 4777778
Q ss_pred CCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE----eCCCCHHHHHH
Q 015862 258 PFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV----AGGYDREDGNK 333 (399)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~----~Ggit~~~a~~ 333 (399)
| -.+++...++++.|.+.|+|.|.+-.- ...-.+....+.++.+|+.+++||-. +.|++.-.-.+
T Consensus 151 P---------vHt~e~yv~~akel~~~g~DSIciKDm--aGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylk 219 (472)
T COG5016 151 P---------VHTLEYYVELAKELLEMGVDSICIKDM--AGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLK 219 (472)
T ss_pred C---------cccHHHHHHHHHHHHHcCCCEEEeecc--cccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHH
Confidence 7 347888999999999999999987421 11111222346889999999999753 34555666678
Q ss_pred HHHcCCCcEEEec
Q 015862 334 AIAEGRADLVVYG 346 (399)
Q Consensus 334 ~L~~G~~D~V~~g 346 (399)
+++.| +|+|=.+
T Consensus 220 AvEAG-vD~iDTA 231 (472)
T COG5016 220 AVEAG-VDGIDTA 231 (472)
T ss_pred HHHhC-cchhhhh
Confidence 99998 8876443
No 271
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.32 E-value=0.033 Score=54.12 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=70.6
Q ss_pred ccCCCCCCCCc--hhhhhHH---HHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE
Q 015862 218 VNDRTDQYGGS--LENRCRF---ALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM 291 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~---~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v 291 (399)
.|||-+-+-.- .+|-.++ +.+.++.+|+.++.. .|.|-.. +.+++.+ ..+.|+|+|-+
T Consensus 159 ~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~------------tleea~e----A~~~GaD~I~L 222 (288)
T PRK07428 159 INHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETE------------TLEQVQE----ALEYGADIIML 222 (288)
T ss_pred ccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECC------------CHHHHHH----HHHcCCCEEEE
Confidence 45665544332 3344443 467888889988743 4555332 2444333 23689999987
Q ss_pred eCCCcccccccCCCchhhHHHHh-hcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 292 VEPRMKTREEKSECPHSLLPMRK-AFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ir~-~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
..- + .......+..+++ .-++|+.++||||.+.+.++.+.| +|+|+++.....-|
T Consensus 223 Dn~--~----~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tG-vD~Isvgsl~~sa~ 278 (288)
T PRK07428 223 DNM--P----VDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETG-VDYISSSAPITRSP 278 (288)
T ss_pred CCC--C----HHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEchhhhCCC
Confidence 521 1 0001122333433 235789999999999999999999 99999999887443
No 272
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.31 E-value=0.14 Score=49.01 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=79.7
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-C-ceEEEecCCcccCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA-D-RVGIRLSPFANYMESGD 267 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~-~-~v~vrls~~~~~~~~~~ 267 (399)
..|.+.|+|+|-+|.-- |+..|+++ +.+ +.+|.+.+-. . |+.+ +.+-. .. .
T Consensus 101 eeAvrlGAdAV~~~v~~-------------------Gs~~E~~~--l~~-l~~v~~ea~~~G~Plla-~~prG--~~--~ 153 (264)
T PRK08227 101 EDAVRLNACAVAAQVFI-------------------GSEYEHQS--IKN-IIQLVDAGLRYGMPVMA-VTAVG--KD--M 153 (264)
T ss_pred HHHHHCCCCEEEEEEec-------------------CCHHHHHH--HHH-HHHHHHHHHHhCCcEEE-EecCC--CC--c
Confidence 44889999999988533 44445433 333 3444444421 2 6555 33311 11 1
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC--CH----HHHHHHHHcCCCc
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY--DR----EDGNKAIAEGRAD 341 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi--t~----~~a~~~L~~G~~D 341 (399)
.+..+.....++.-.+.|+|++-+.- + . +..+++-+..++||+..||= +. +...++|+.| +-
T Consensus 154 ~~~~~~ia~aaRiaaELGADiVK~~y-------~---~-~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aG-a~ 221 (264)
T PRK08227 154 VRDARYFSLATRIAAEMGAQIIKTYY-------V---E-EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEG-AS 221 (264)
T ss_pred CchHHHHHHHHHHHHHHcCCEEecCC-------C---H-HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC-Cc
Confidence 22333344456666888999988521 1 1 34555666788998888874 33 3466788877 99
Q ss_pred EEEechHHhhCCcHHHHH
Q 015862 342 LVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 342 ~V~~gR~~iadPdl~~k~ 359 (399)
.|.+||=....|+-..-+
T Consensus 222 Gv~~GRNIfQ~~~p~~~~ 239 (264)
T PRK08227 222 GVDMGRNIFQSEHPVAMI 239 (264)
T ss_pred eeeechhhhccCCHHHHH
Confidence 999999999988754433
No 273
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.30 E-value=0.039 Score=49.93 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+..|+-|++.|+-||.+++ .+-|++||+.+.-..||+-=..+++..
T Consensus 2 ~~mA~Aa~~gGA~giR~~~--------------------------------~~dI~aik~~v~lPIIGi~K~~y~~~~-- 47 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG--------------------------------VEDIRAIKKAVDLPIIGIIKRDYPDSD-- 47 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES--------------------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--
T ss_pred HHHHHHHHHCCceEEEcCC--------------------------------HHHHHHHHHhcCCCEEEEEeccCCCCC--
Confidence 4567888899999999772 677999999984223676222111111
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 344 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 344 (399)
...+ .+.+=++.|.++|+|.+-+.......+ ....++++.||+.. ..++ ..+ |.|++..+.+.| +|+|+
T Consensus 48 -V~IT--PT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~-~l~M--ADist~ee~~~A~~~G-~D~I~ 117 (192)
T PF04131_consen 48 -VYIT--PTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY-QLVM--ADISTLEEAINAAELG-FDIIG 117 (192)
T ss_dssp ---BS---SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT-SEEE--EE-SSHHHHHHHHHTT--SEEE
T ss_pred -eEEC--CCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC-cEEe--eecCCHHHHHHHHHcC-CCEEE
Confidence 1111 134446677789999988765433222 23456788899987 4444 456 899999999999 99998
Q ss_pred ec
Q 015862 345 YG 346 (399)
Q Consensus 345 ~g 346 (399)
--
T Consensus 118 TT 119 (192)
T PF04131_consen 118 TT 119 (192)
T ss_dssp -T
T ss_pred cc
Confidence 64
No 274
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.31 Score=46.99 Aligned_cols=187 Identities=18% Similarity=0.148 Sum_probs=110.0
Q ss_pred HhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCC---CCcccC-CCCCCcccccCCCcccCCCCCCCCChhHHHHH
Q 015862 106 VEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQ---APISCT-DKPLTPQIRANGVDVAQFTPPRRLRTDEIPQI 181 (399)
Q Consensus 106 i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~---~~~aps-~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~i 181 (399)
.+.++.+.+++.+.++++++|....++.-..... ... ..++.. .+|... +..+ + .
T Consensus 28 lE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~-~~~~~v~~~a~~~~vPV~l-HlDH------g--~----------- 86 (286)
T COG0191 28 LETLQAILEAAEEEKSPVIIQFSEGAAKYAGGAD-SLAHMVKALAEKYGVPVAL-HLDH------G--A----------- 86 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccHHHHhchHH-HHHHHHHHHHHHCCCCEEE-ECCC------C--C-----------
Confidence 5678889999999999999999865432111000 000 000000 022110 0001 1 0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEec---C
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS---P 258 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls---~ 258 (399)
=.+...+|.++||.-|-|.+.|- ++|...++..|+++...+. |- .|-.-|. .
T Consensus 87 ---~~~~~~~ai~~GFsSvMiDgS~~--------------------~~eENi~~tkevv~~ah~~-gv-sVEaElG~~GG 141 (286)
T COG0191 87 ---SFEDCKQAIRAGFSSVMIDGSHL--------------------PFEENIAITKEVVEFAHAY-GV-SVEAELGTLGG 141 (286)
T ss_pred ---CHHHHHHHHhcCCceEEecCCcC--------------------CHHHHHHHHHHHHHHHHHc-CC-cEEEEeccccC
Confidence 14556788999999999998771 3788899999999988653 32 2333332 2
Q ss_pred Cccc-CCCCC---CChHHHHHHHHHhhhhhCceEEEEeCCCcccccc-cCC--CchhhHHHHhhcCCcEEEeCC--CCHH
Q 015862 259 FANY-MESGD---SNPEALGLYMAESLNKYGILYCHMVEPRMKTREE-KSE--CPHSLLPMRKAFKGTFLVAGG--YDRE 329 (399)
Q Consensus 259 ~~~~-~~~~~---~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~-~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~ 329 (399)
.++. ..... ....+++.++ .+..|+|.|-+.-++....|. ..+ ..+.+++|++.+++|++.=|+ +..+
T Consensus 142 ~Edg~~~~~~~~~~tdp~ea~~f---v~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~ 218 (286)
T COG0191 142 EEDGVVLYTDPADLTDPEEALEF---VERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDE 218 (286)
T ss_pred ccCCcccccchhhhCCHHHHHHH---HhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 2221 11111 1123333333 356789999877666443443 222 345788999999999765554 6889
Q ss_pred HHHHHHHcCCCc
Q 015862 330 DGNKAIAEGRAD 341 (399)
Q Consensus 330 ~a~~~L~~G~~D 341 (399)
+.+++|+-|.+-
T Consensus 219 eI~~aI~~GV~K 230 (286)
T COG0191 219 EIREAIKLGVAK 230 (286)
T ss_pred HHHHHHHhCceE
Confidence 999999999654
No 275
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.25 E-value=0.16 Score=47.63 Aligned_cols=138 Identities=20% Similarity=0.343 Sum_probs=84.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 015862 171 RRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 250 (399)
Q Consensus 171 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~ 250 (399)
|-|.. ..+..++.|+ ++|+|-|-+|.=. ..-+.++++.||+. |-
T Consensus 68 HLMv~-~P~~~i~~~~-------~~gad~I~~H~Ea--------------------------~~~~~~~l~~Ir~~-g~- 111 (223)
T PRK08745 68 HLMVE-PVDRIVPDFA-------DAGATTISFHPEA--------------------------SRHVHRTIQLIKSH-GC- 111 (223)
T ss_pred EeccC-CHHHHHHHHH-------HhCCCEEEEcccC--------------------------cccHHHHHHHHHHC-CC-
Confidence 44543 4566666664 4799999999532 01246788999986 32
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe--CCCcccccccCCCchhhHHHHhhc-----CCcEEEe
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV--EPRMKTREEKSECPHSLLPMRKAF-----KGTFLVA 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~ 323 (399)
..|+=|++ ..+.+....++.. +|+|-+- .|.+.....-+...+-++++|+.. +..+-+-
T Consensus 112 k~GlalnP---------~T~~~~i~~~l~~-----vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVD 177 (223)
T PRK08745 112 QAGLVLNP---------ATPVDILDWVLPE-----LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEID 177 (223)
T ss_pred ceeEEeCC---------CCCHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 57888887 2345544444432 4555432 232221111111122333444432 2447788
Q ss_pred CCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHH
Q 015862 324 GGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 324 Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~ 359 (399)
||++.+.+.++.+.| +|.+.+|++++..+|..+.+
T Consensus 178 GGI~~eti~~l~~aG-aDi~V~GSaiF~~~d~~~~~ 212 (223)
T PRK08745 178 GGVKADNIGAIAAAG-ADTFVAGSAIFNAPDYAQVI 212 (223)
T ss_pred CCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHH
Confidence 999999999999999 99999999999777754443
No 276
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.23 E-value=0.052 Score=50.57 Aligned_cols=126 Identities=17% Similarity=0.045 Sum_probs=73.4
Q ss_pred HHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChH
Q 015862 192 AIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPE 271 (399)
Q Consensus 192 a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~ 271 (399)
+.++|+|.+-+|+..| ...+.+.++++++. |. .++|-+.+. .+.
T Consensus 76 ~~~~Gad~vTvH~~a~-------------------------~~~i~~~~~~~~~~-g~-~~~V~llts---------~~~ 119 (216)
T PRK13306 76 AFEAGADWVTVICAAH-------------------------IPTIKAALKVAKEF-NG-EIQIELYGN---------WTW 119 (216)
T ss_pred HHHCCCCEEEEeCCCC-------------------------HHHHHHHHHHHHHc-CC-EEEEEECCC---------CCH
Confidence 6789999999997553 12345556665542 32 577777652 123
Q ss_pred HHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCC--cEEEeCCCCHHHHHHHHHcCCCcEEEechHH
Q 015862 272 ALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKG--TFLVAGGYDREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 272 ~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~--pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
+.. +.+.+.+++.+-++................+..||+..+. .+.+.||++++.+....+.| +|++.+||++
T Consensus 120 ~~l----~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~~-ad~~VvGr~I 194 (216)
T PRK13306 120 EQA----QQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDLKLFKGIP-VKTFIAGRAI 194 (216)
T ss_pred HHH----HHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhHHHHhcCC-CCEEEECCcc
Confidence 322 1333445443333222111111111223445566666532 27888999998887766665 9999999999
Q ss_pred hhCCcHHHH
Q 015862 350 LANPDLPRR 358 (399)
Q Consensus 350 iadPdl~~k 358 (399)
...+|..+.
T Consensus 195 ~~a~dp~~a 203 (216)
T PRK13306 195 RGAADPAAA 203 (216)
T ss_pred cCCCCHHHH
Confidence 988884433
No 277
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=96.23 E-value=0.047 Score=56.10 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=76.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccC--CCC-------CCChHHHHHHHHHh-hhhhCceEEEEeCCCcc
Q 015862 229 LENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYM--ESG-------DSNPEALGLYMAES-LNKYGILYCHMVEPRMK 297 (399)
Q Consensus 229 lenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~--~~~-------~~~~~~~~~~l~~~-Le~~Gvd~l~v~~~~~~ 297 (399)
.+...+++.+.+++++.++|++ .|++..+..+.+. ... ...+.++++++++. ++++++.||+ +|.
T Consensus 212 ~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~~~~~~~~~s~~eai~~~~~lle~~~i~~iE--dPl-- 287 (425)
T TIGR01060 212 NEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSIE--DGL-- 287 (425)
T ss_pred cHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceeeecCcccccCHHHHHHHHHHHHhcCCcEEEE--cCC--
Confidence 4566778888888888889987 5888886532221 100 01355678888884 6778888777 442
Q ss_pred cccccCCCchhhHHHHhhc--CCcEEEeCCC-C-HHHHHHHHHcCCCcEEEe
Q 015862 298 TREEKSECPHSLLPMRKAF--KGTFLVAGGY-D-REDGNKAIAEGRADLVVY 345 (399)
Q Consensus 298 ~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t-~~~a~~~L~~G~~D~V~~ 345 (399)
....++..+.+++.+ ++||++...+ | +++++++++.+.||+|.+
T Consensus 288 ----~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~i 335 (425)
T TIGR01060 288 ----SEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILI 335 (425)
T ss_pred ----CcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEe
Confidence 122456677899998 7888776665 5 999999999999998854
No 278
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=96.21 E-value=0.11 Score=52.97 Aligned_cols=135 Identities=12% Similarity=0.081 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhC-CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc-eEEEecCCc
Q 015862 183 NDFRLAARNAIEAG-FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGIRLSPFA 260 (399)
Q Consensus 183 ~~f~~aA~~a~~aG-fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~-v~vrls~~~ 260 (399)
++.+..|+.+.+.| |+.+++ .|.. +..+..+.+-..+.|+++|+. |.++ |-|..+.+
T Consensus 180 d~m~~~a~~~~~~G~~~~~Kk-vG~~------------------~~k~~~~~~~~~~ri~~lr~~-g~~~~l~vDaN~~- 238 (408)
T TIGR01502 180 DKMILKEVDVLPHGLINSVEE-LGLD------------------GEKLLEYVKWLRDRIIKLGRE-GYAPIFHIDVYGT- 238 (408)
T ss_pred HHHHHHHHHHHhccCccceee-ecCC------------------HHHhhhhHHHHHHHHHHhhcc-CCCCeEEEEcCCC-
Confidence 44566677777776 888884 3321 111223444555777777743 5543 44444421
Q ss_pred ccCCCCCCChHHHHHHHHHhhhh----hCceEEEEeCCCcccccccCCCchhhHHHHhh-----cCCcEEEeCCC-CHHH
Q 015862 261 NYMESGDSNPEALGLYMAESLNK----YGILYCHMVEPRMKTREEKSECPHSLLPMRKA-----FKGTFLVAGGY-DRED 330 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~----~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~-----~~~pvi~~Ggi-t~~~ 330 (399)
.... ...+.++++++.+.|++ .++ +++ +|... .......+..+.+++. +++||++...+ |+++
T Consensus 239 -~~~~-~~~~~~~ai~~l~~l~~~~~~~~~-~iE--qPv~~--~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d 311 (408)
T TIGR01502 239 -IGEA-FGVDIKAMADYIQTLAEAAKPFHL-RIE--GPMDV--GSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVED 311 (408)
T ss_pred -cccc-cCCCHHHHHHHHHHHHHhCccCCe-EEe--cCCCC--CcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHH
Confidence 0000 12356778889999986 454 455 44210 0001235677788887 48999999888 8999
Q ss_pred HHHHHHcCCCcEEEe
Q 015862 331 GNKAIAEGRADLVVY 345 (399)
Q Consensus 331 a~~~L~~G~~D~V~~ 345 (399)
+.++++.+.||+|-+
T Consensus 312 ~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 312 VKFFTDAKAGHMVQI 326 (408)
T ss_pred HHHHHHhCCCCEEEe
Confidence 999999999999876
No 279
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.14 E-value=0.15 Score=49.20 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=68.7
Q ss_pred ccCCCCCCCC--chhhhhHHH---HHHHHHHHHHhCC-CceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE
Q 015862 218 VNDRTDQYGG--SLENRCRFA---LEIVEAVSNEIGA-DRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM 291 (399)
Q Consensus 218 ~N~R~D~yGG--slenR~r~~---~eii~avR~~vg~-~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v 291 (399)
.|||-+-+-+ -.+|-..+. .+.++.+|+..+. ..|.|-++ +.+++.+. .++|+|.|-+
T Consensus 145 ~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~------------tleea~~A----~~~GaDiI~L 208 (273)
T PRK05848 145 SNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECE------------SLEEAKNA----MNAGADIVMC 208 (273)
T ss_pred ccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeC------------CHHHHHHH----HHcCCCEEEE
Confidence 4666655433 234544443 6778888888874 35666443 34443333 3579998876
Q ss_pred eCCCcccccccCCCchhhHHHHhh----c-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 292 VEPRMKTREEKSECPHSLLPMRKA----F-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ir~~----~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
... ..+.++++.+. . ++.+.++||+|++.+.++.+.| +|+|++|.....-|
T Consensus 209 Dn~----------~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~G-vD~IsvG~l~~sa~ 264 (273)
T PRK05848 209 DNM----------SVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSG-VDAISSGSLIHQAT 264 (273)
T ss_pred CCC----------CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEeChhhcCCC
Confidence 432 12222222221 1 3459999999999999999999 99999999876333
No 280
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.13 E-value=0.13 Score=47.55 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=39.9
Q ss_pred chhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 306 PHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 306 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
..+++.++.-++ +|++.+||++++.+.+.|+.| +..|++|..++...
T Consensus 136 ~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG-a~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 136 VKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP-NVACGGGSWLVPKD 183 (204)
T ss_pred HHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC-CEEEEEChhhcCch
Confidence 356777777665 789999999999999999999 99999999998533
No 281
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.09 E-value=0.77 Score=45.70 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-
Q 015862 177 EIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR- 255 (399)
Q Consensus 177 eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr- 255 (399)
.++.+++.-.+..++|.++||+-|-|.+.+ -++|...++.+++++..+.. |- .|-.-
T Consensus 104 ~~~~~~~a~~~~~~~a~~~GftSVMiDgS~--------------------lp~eENI~~TkevVe~Ah~~-gv-sVEaEl 161 (345)
T cd00946 104 WFDGLLEADEEYFKQHGEPLFSSHMLDLSE--------------------EPLEENIEICKKYLERMAKI-NM-WLEMEI 161 (345)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEeeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEe
Confidence 345555555566678889999999999776 16788899999999888553 32 12222
Q ss_pred --ecCCcccCCC------CCCChHHHHHHHHHhhhh-hCceEEEEeCCCcccccc-cCC--CchhhHHH----Hhhc---
Q 015862 256 --LSPFANYMES------GDSNPEALGLYMAESLNK-YGILYCHMVEPRMKTREE-KSE--CPHSLLPM----RKAF--- 316 (399)
Q Consensus 256 --ls~~~~~~~~------~~~~~~~~~~~l~~~Le~-~Gvd~l~v~~~~~~~~~~-~~~--~~~~~~~i----r~~~--- 316 (399)
+...++.... ....+.+++.+|++.+.. .|+|.|-++-++....+. ..+ ..+.++.| ++.+
T Consensus 162 G~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~ 241 (345)
T cd00946 162 GITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLA 241 (345)
T ss_pred cccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccc
Confidence 3222221100 012356778888876643 589999888777544443 223 34567777 5555
Q ss_pred ---CCcEEEeCC--CCHHHHHHHHHcCCCcEEEech
Q 015862 317 ---KGTFLVAGG--YDREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 317 ---~~pvi~~Gg--it~~~a~~~L~~G~~D~V~~gR 347 (399)
++|++.=|+ ++.++.+++++.|.+- |=++.
T Consensus 242 ~~~~ipLVLHGgSG~~~e~i~kai~~GI~K-iNi~T 276 (345)
T cd00946 242 DDKPLYFVFHGGSGSTKEEIREAISYGVVK-MNIDT 276 (345)
T ss_pred cCCCCCEEEeCCCCCCHHHHHHHHHcCCee-EEeCc
Confidence 678665554 5789999999999544 43433
No 282
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.07 E-value=0.2 Score=48.69 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhC-CC-ceEEEecCCccc
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIG-AD-RVGIRLSPFANY 262 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg-~~-~v~vrls~~~~~ 262 (399)
..+..++..++|.-||.|--.. .++|...++|.---...-..+-|+++|++.. ++ .|..|.-...
T Consensus 90 v~~tv~~~~~aG~agi~IEDq~-----------~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-- 156 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIEDQV-----------LPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARA-- 156 (285)
T ss_pred HHHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCccc--
Confidence 4566677789999999986432 2456655555311123344555666666653 33 3566776531
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE---eCCCCHH-HHHHHHHcC
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV---AGGYDRE-DGNKAIAEG 338 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~---~Ggit~~-~a~~~L~~G 338 (399)
....+++++-++...++|+|.+-+... ...+.++.+.+.++.|+++ .++-||. ..+++-+-|
T Consensus 157 -----~~g~deAI~Ra~ay~~AGAD~vfi~g~---------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lG 222 (285)
T TIGR02317 157 -----VEGLDAAIERAKAYVEAGADMIFPEAL---------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAG 222 (285)
T ss_pred -----ccCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcC
Confidence 224788999999999999999887432 1345677888888888743 2343432 455666667
Q ss_pred CCcEEEechHHh
Q 015862 339 RADLVVYGRLFL 350 (399)
Q Consensus 339 ~~D~V~~gR~~i 350 (399)
+.+|+++-.++
T Consensus 223 -v~~v~~~~~~~ 233 (285)
T TIGR02317 223 -YKMVIYPVTAF 233 (285)
T ss_pred -CcEEEEchHHH
Confidence 99999995554
No 283
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.06 E-value=0.13 Score=48.62 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++|||+|-+-... .+..+ . ..| ++.+ -+.-.++.+++|++.+..-||.+.+--
T Consensus 22 ~~sA~i~e~aG~dai~v~~s~---~a~~~-G----~pD--~~~v--tl~em~~~~~~I~r~~~~~pviaD~~~------- 82 (240)
T cd06556 22 YSMAKQFADAGLNVMLVGDSQ---GMTVA-G----YDD--TLPY--PVNDVPYHVRAVRRGAPLALIVADLPF------- 82 (240)
T ss_pred HHHHHHHHHcCCCEEEEChHH---HHHhc-C----CCC--CCCc--CHHHHHHHHHHHHhhCCCCCEEEeCCC-------
Confidence 567888899999999976533 33222 1 112 1111 133456777777777753377776532
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCC------------------
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYD------------------ 327 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit------------------ 327 (399)
+...+.+++.+.++.+.++|++.|++-... ...+.++.++++ .++|++=-+.+
T Consensus 83 G~g~~~~~~~~~~~~l~~aGa~gv~iED~~--------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 83 GAYGAPTAAFELAKTFMRAGAAGVKIEGGE--------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred CCCcCHHHHHHHHHHHHHcCCcEEEEcCcH--------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHH
Confidence 223355778889999999999999985431 112233444443 25554322222
Q ss_pred -----HHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 328 -----REDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 328 -----~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
.+.+..+.+.| +|+|.+- .+ ++++.+++.+..+
T Consensus 154 ~~~~ai~Ra~ay~~AG-Ad~i~~e--~~-~~e~~~~i~~~~~ 191 (240)
T cd06556 154 AGEQLIADALAYAPAG-ADLIVME--CV-PVELAKQITEALA 191 (240)
T ss_pred HHHHHHHHHHHHHHcC-CCEEEEc--CC-CHHHHHHHHHhCC
Confidence 23344555666 9999995 33 8899999998754
No 284
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=96.06 E-value=0.011 Score=59.07 Aligned_cols=71 Identities=25% Similarity=0.183 Sum_probs=55.4
Q ss_pred hhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 280 SLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 280 ~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
...+.|.+.|.++...-.+.....+..+.+..++++++ ++|++.||+ +..|+.++|+-| ||+|++||+++.
T Consensus 234 ~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG-A~~v~igrp~L~ 307 (360)
T COG1304 234 GAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG-ADAVGIGRPFLY 307 (360)
T ss_pred hhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC-CchhhhhHHHHH
Confidence 34567889888875432222233445567788999987 789999999 999999999999 999999999875
No 285
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.04 E-value=0.27 Score=46.11 Aligned_cols=139 Identities=16% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 015862 171 RRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 250 (399)
Q Consensus 171 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~ 250 (399)
|-|.. +.++.++.| .++|+|.|-+|.=. ..-+.++++.||+. |-.
T Consensus 74 HLMv~-~P~~~i~~~-------~~aGad~It~H~Ea--------------------------~~~~~~~l~~Ik~~-g~~ 118 (228)
T PRK08091 74 HLMVR-DQFEVAKAC-------VAAGADIVTLQVEQ--------------------------THDLALTIEWLAKQ-KTT 118 (228)
T ss_pred EeccC-CHHHHHHHH-------HHhCCCEEEEcccC--------------------------cccHHHHHHHHHHC-CCC
Confidence 44433 344455555 67899999999531 01256788999886 321
Q ss_pred -ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe--CCCcccccccCCCchhhHHHHhhc-----CCcEEE
Q 015862 251 -RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV--EPRMKTREEKSECPHSLLPMRKAF-----KGTFLV 322 (399)
Q Consensus 251 -~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~ 322 (399)
..|+=|+| ..+.+....++.. +|+|-+- .|.+......+...+-++++|+.. +..+-+
T Consensus 119 ~kaGlalnP---------~Tp~~~i~~~l~~-----vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 119 VLIGLCLCP---------ETPISLLEPYLDQ-----IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred ceEEEEECC---------CCCHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 46888887 3355554444432 5665442 232221111111122233333322 344677
Q ss_pred eCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHH
Q 015862 323 AGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 323 ~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~ 359 (399)
-||++.+.+.++.+.| +|.+.+|++++.++|.-+.+
T Consensus 185 DGGI~~~ti~~l~~aG-aD~~V~GSalF~~~d~~~~i 220 (228)
T PRK08091 185 DGSMTLELASYLKQHQ-IDWVVSGSALFSQGELKTTL 220 (228)
T ss_pred ECCCCHHHHHHHHHCC-CCEEEEChhhhCCCCHHHHH
Confidence 7999999999999999 99999999999888864443
No 286
>PRK14057 epimerase; Provisional
Probab=96.03 E-value=0.098 Score=49.80 Aligned_cols=141 Identities=13% Similarity=0.189 Sum_probs=84.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-
Q 015862 171 RRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA- 249 (399)
Q Consensus 171 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~- 249 (399)
|-|.. +.+..++.| .++|+|.|-+|.=. +..+.++++.||+. |-
T Consensus 81 HLMV~-~P~~~i~~~-------~~aGad~It~H~Ea--------------------------~~~~~~~l~~Ir~~-G~k 125 (254)
T PRK14057 81 HLMVA-DQWTAAQAC-------VKAGAHCITLQAEG--------------------------DIHLHHTLSWLGQQ-TVP 125 (254)
T ss_pred EeeeC-CHHHHHHHH-------HHhCCCEEEEeecc--------------------------ccCHHHHHHHHHHc-CCC
Confidence 44443 355566665 45799999999532 01246788889886 21
Q ss_pred ------C-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe--CCCcccccccCCCchhhHHHHhhc----
Q 015862 250 ------D-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV--EPRMKTREEKSECPHSLLPMRKAF---- 316 (399)
Q Consensus 250 ------~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~ir~~~---- 316 (399)
. ..++=++| ..+.+....++.. +|+|-+- .|.+......+...+-++++|+..
T Consensus 126 ~~~~~~~~kaGlAlnP---------~Tp~e~i~~~l~~-----vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~ 191 (254)
T PRK14057 126 VIGGEMPVIRGISLCP---------ATPLDVIIPILSD-----VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKR 191 (254)
T ss_pred cccccccceeEEEECC---------CCCHHHHHHHHHh-----CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcC
Confidence 1 36888887 3355554444432 5655432 332221111111112233333332
Q ss_pred -CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 317 -KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 317 -~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
+..+-+-||++.+.+.++.+.| +|.+.+|++++.++++.+.++.
T Consensus 192 ~~~~IeVDGGI~~~ti~~l~~aG-ad~~V~GSalF~~~d~~~~i~~ 236 (254)
T PRK14057 192 EGKIIVIDGSLTQDQLPSLIAQG-IDRVVSGSALFRDDRLVENTRS 236 (254)
T ss_pred CCceEEEECCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHHHH
Confidence 2447778999999999999999 9999999999988886554443
No 287
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.03 E-value=0.085 Score=50.70 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=78.7
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCC-chhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGG-SLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGG-slenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
++.|+.|.+||+=+|-.-=-- | ...|.. || +-.|- .+.|++|+++|. -||.=++...
T Consensus 20 ~eqa~iae~aga~avm~le~~---------p-~d~r~~--ggv~R~~~----p~~I~~I~~~V~-iPVig~~kig----- 77 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERV---------P-ADIRAS--GGVARMSD----PKMIKEIMDAVS-IPVMAKVRIG----- 77 (287)
T ss_pred HHHHHHHHHcCceEEEeeccC---------c-hhhHhc--CCeeecCC----HHHHHHHHHhCC-CCEEEEeecc-----
Confidence 677999999999888632111 1 112332 44 22222 567888888883 3654333321
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
...=++.|++.|+|+|.-++. ..+..++...+|+.+++|+++ +. |.++|..+++.| +|+|
T Consensus 78 ---------h~~Ea~~L~~~GvDiIDeTe~-------lrPade~~~~~K~~f~vpfma--d~~~l~EAlrai~~G-admI 138 (287)
T TIGR00343 78 ---------HFVEAQILEALGVDYIDESEV-------LTPADWTFHIDKKKFKVPFVC--GARDLGEALRRINEG-AAMI 138 (287)
T ss_pred ---------HHHHHHHHHHcCCCEEEccCC-------CCcHHHHHHHHHHHcCCCEEc--cCCCHHHHHHHHHCC-CCEE
Confidence 023367789999999974332 112356777888888888754 44 899999999999 9999
Q ss_pred Eec
Q 015862 344 VYG 346 (399)
Q Consensus 344 ~~g 346 (399)
.--
T Consensus 139 ~Tt 141 (287)
T TIGR00343 139 RTK 141 (287)
T ss_pred ecc
Confidence 875
No 288
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.03 E-value=0.24 Score=45.80 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=76.3
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~ 269 (399)
+.+.++|+|.|-+|+-.|. ..+.++++.+|+. |- .+++=+++.. ... ...
T Consensus 74 ~~~~~~gad~vtvh~e~g~-------------------------~~l~~~i~~~~~~-g~-~~~v~~~~~~-~~~--~~~ 123 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGR-------------------------DSLKAVVEAAAES-GG-KVFVVVEMSH-PGA--LEF 123 (215)
T ss_pred HHHHhCCCCEEEEcCcCCH-------------------------HHHHHHHHHHHhc-CC-eEEEEEeCCC-CCC--CCC
Confidence 4456799999999976530 1245667777753 32 3443333311 111 111
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc-EEEeCCCCHH--HHHHHHHcCCCcEEEec
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT-FLVAGGYDRE--DGNKAIAEGRADLVVYG 346 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~--~a~~~L~~G~~D~V~~g 346 (399)
-.+....++.+..+.|.+...+.. ...+-++.+|+..+.. .+..||++++ .+..+++.| +|++.+|
T Consensus 124 ~~~~~~~v~~m~~e~G~~g~~~~~----------~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aG-ad~iV~G 192 (215)
T PRK13813 124 IQPHADKLAKLAQEAGAFGVVAPA----------TRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAG-ADYVIVG 192 (215)
T ss_pred HHHHHHHHHHHHHHhCCCeEEECC----------CcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcC-CCEEEEC
Confidence 223344555555667766544221 1123445676666543 4477898665 388899988 9999999
Q ss_pred hHHhhCCcHHHHH
Q 015862 347 RLFLANPDLPRRF 359 (399)
Q Consensus 347 R~~iadPdl~~k~ 359 (399)
|+++..+|..+.+
T Consensus 193 r~I~~~~d~~~~~ 205 (215)
T PRK13813 193 RSIYNAADPREAA 205 (215)
T ss_pred cccCCCCCHHHHH
Confidence 9999888854443
No 289
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=96.02 E-value=0.081 Score=49.43 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=45.4
Q ss_pred hhhCceEEEEeCCCcccccccCCCchhhHHHH------hhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 282 NKYGILYCHMVEPRMKTREEKSECPHSLLPMR------KAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 282 e~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir------~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
.+.|+|+|+++.+.|............+..++ ...+.-|-++.|++.+....+.+-...+=|.+|..++++-
T Consensus 141 ~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~A 218 (234)
T cd00003 141 KEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRA 218 (234)
T ss_pred HHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence 45678888887775533221111111122222 2345667777788999988877766688899999999865
No 290
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=95.95 E-value=0.11 Score=48.64 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=45.6
Q ss_pred hhhCceEEEEeCCCcccccccCCCchhhHHHH------hhcCCcEEEeCCCCHHHHHHHHHcCC-CcEEEechHHhhCC
Q 015862 282 NKYGILYCHMVEPRMKTREEKSECPHSLLPMR------KAFKGTFLVAGGYDREDGNKAIAEGR-ADLVVYGRLFLANP 353 (399)
Q Consensus 282 e~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir------~~~~~pvi~~Ggit~~~a~~~L~~G~-~D~V~~gR~~iadP 353 (399)
.+.|+|+|+++.+.|...........-+..++ ...+.-|-++.|++.+....+.+--. .+=|.+|..++++-
T Consensus 141 ~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~A 219 (237)
T TIGR00559 141 AEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADA 219 (237)
T ss_pred HHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHH
Confidence 45688888888776543222111111122222 23456677777889999888776544 78899999999865
No 291
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=95.91 E-value=0.02 Score=53.63 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCCCEEEEcccc---------chhhhhcccCccc-----------------------------CCCCCCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAH---------GYLIDQFLKDQVN-----------------------------DRTDQYG 226 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~---------GyLl~qFlSp~~N-----------------------------~R~D~yG 226 (399)
-+++|..|.++|+|||-+|--- =+.|.+.++...| ..|-+.|
T Consensus 24 pv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~TTegG 103 (239)
T PF03740_consen 24 PVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPEKREELTTEGG 103 (239)
T ss_dssp HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SGGGBSTTSS
T ss_pred HHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCCCCCCcCCCcC
Confidence 4899999999999999998532 2334443332222 2333434
Q ss_pred CchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCc
Q 015862 227 GSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECP 306 (399)
Q Consensus 227 GslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~ 306 (399)
=++......+.++++.+++. +||+|.+ -++..+. ++.-.+.|+|+|+++.+.|...+......
T Consensus 104 ldv~~~~~~l~~~i~~L~~~------gIrvSLF--------iDP~~~q---i~~A~~~Gad~VELhTG~yA~a~~~~~~~ 166 (239)
T PF03740_consen 104 LDVAGNRDRLKPVIKRLKDA------GIRVSLF--------IDPDPEQ---IEAAKELGADRVELHTGPYANAFDDAEEA 166 (239)
T ss_dssp B-TCGGHHHHHHHHHHHHHT------T-EEEEE--------E-S-HHH---HHHHHHTT-SEEEEETHHHHHHSSHHHHH
T ss_pred ChhhcCHHHHHHHHHHHHhC------CCEEEEE--------eCCCHHH---HHHHHHcCCCEEEEehhHhhhhcCCHHHH
Confidence 35555555666666666553 3344432 1122222 33334568888888876543222111000
Q ss_pred --hhhHHHH------hhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 307 --HSLLPMR------KAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 307 --~~~~~ir------~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
+.+..++ ...+.-|-++.|++.+....+.+--...=|.+|..++++-
T Consensus 167 ~~ell~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~A 221 (239)
T PF03740_consen 167 EEELLERLRDAARYAHELGLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARA 221 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHH
Confidence 1122222 2346668888899998888888877789999999999864
No 292
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=95.89 E-value=0.019 Score=53.80 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=39.0
Q ss_pred hhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcH
Q 015862 308 SLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 308 ~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl 355 (399)
..+..|+..+.|++.+||| |.++|+++++.| +|.|.+|-.+-.||++
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aG-AD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAEAG-ADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHCTT-SSEEEESCHHHHHH-H
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHHCC-CCEEEECCEEEEcchH
Confidence 4444555567999999999 999999999999 9999999999999983
No 293
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.81 E-value=0.26 Score=48.94 Aligned_cols=141 Identities=13% Similarity=0.013 Sum_probs=82.8
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCccc-------------CCCCCCCCchhhh-------hHHHHHHHHHHHH
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVN-------------DRTDQYGGSLENR-------CRFALEIVEAVSN 245 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N-------------~R~D~yGGslenR-------~r~~~eii~avR~ 245 (399)
.+..+++.++||-+|.+..-. ..|..| .|--+.-| +-|+ ....++.++.+++
T Consensus 27 ~~~~~~~~~~g~Gavv~kti~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~gl~n~g~d~~~~~i~~~~~ 98 (334)
T PRK07565 27 VDNVKRLEDAGAGAVVLKSLF-------EEQIRHEAAELDRHLTHGTESFAEALD-YFPEPAKFYVGPEEYLELIRRAKE 98 (334)
T ss_pred HHHHHHHHHCCCeEEEEeeCC-------HHHhhccccccccccccCCCcchhhhh-hhhhhhccCcCHHHHHHHHHHHHH
Confidence 344455678999999988643 112212 11111112 3334 3455666767777
Q ss_pred HhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc-ccccC-----CCchhhHHHHhhcCCc
Q 015862 246 EIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT-REEKS-----ECPHSLLPMRKAFKGT 319 (399)
Q Consensus 246 ~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~-~~~~~-----~~~~~~~~ir~~~~~p 319 (399)
.++ .+|.+.++.. +.++..++++.++++|+|+|++.-..... ..... ...+.++.+++.+++|
T Consensus 99 ~~~-~pvi~sI~g~----------~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iP 167 (334)
T PRK07565 99 AVD-IPVIASLNGS----------SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIP 167 (334)
T ss_pred hcC-CcEEEEeccC----------CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCc
Confidence 663 3788877642 34567889999999999999885321000 00000 1234567888888999
Q ss_pred EEEe--CCC-CHHHHHHHHHcCCCcEEEe
Q 015862 320 FLVA--GGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 320 vi~~--Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
|++- +.+ +..+..+++++..+|+|.+
T Consensus 168 V~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 168 VAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred EEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 8866 344 4555555555545997766
No 294
>PRK06852 aldolase; Validated
Probab=95.78 E-value=0.28 Score=47.92 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCC--CH----HHHHHHHHcCCCcE
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGY--DR----EDGNKAIAEGRADL 342 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi--t~----~~a~~~L~~G~~D~ 342 (399)
..+.....++.-.+.|+|+|-+--+... .....+..+++-+.. ++||+..||= +. +.+..+|+.+++..
T Consensus 186 ~~~~ia~aaRiaaELGADIVKv~y~~~~----~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~G 261 (304)
T PRK06852 186 DPHLIAGAAGVAACLGADFVKVNYPKKE----GANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASG 261 (304)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCCCcC----CCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCce
Confidence 3455566677778899999986422100 001234555566667 7898877774 33 34566777344999
Q ss_pred EEechHHhhCCcH
Q 015862 343 VVYGRLFLANPDL 355 (399)
Q Consensus 343 V~~gR~~iadPdl 355 (399)
|.+||=.+..|+-
T Consensus 262 v~~GRNIfQ~~~p 274 (304)
T PRK06852 262 NATGRNIHQKPLD 274 (304)
T ss_pred eeechhhhcCCCc
Confidence 9999999998754
No 295
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.74 E-value=0.13 Score=48.26 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=32.4
Q ss_pred cCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 316 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 316 ~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
.++||+++||+ +.++..++.+.| +|.|.+|+++...
T Consensus 181 ~~~pviasGGv~~~~Dl~~l~~~g-~~gvivg~al~~g 217 (228)
T PRK04128 181 GDEEFIYAGGVSSAEDVKKLAEIG-FSGVIIGKALYEG 217 (228)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEhhhhcC
Confidence 57999999999 899999998876 9999999998765
No 296
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.73 E-value=0.4 Score=46.59 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhh---hhHHHHHHHHHHHHH-hCCC-ceEEEecCC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLEN---RCRFALEIVEAVSNE-IGAD-RVGIRLSPF 259 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslen---R~r~~~eii~avR~~-vg~~-~v~vrls~~ 259 (399)
..+..++..++|..||-|--.. .++|...+|+.-+. -..-..+.|++++++ .+++ +|..|.-..
T Consensus 94 v~r~V~~l~~aGvaGi~iEDq~-----------~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~ 162 (285)
T TIGR02320 94 FRRLVRKLERRGVSAVCIEDKL-----------GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESL 162 (285)
T ss_pred HHHHHHHHHHcCCeEEEEeccC-----------CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 3555566677999999984221 23444444443111 123345566666665 4555 577785431
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-----CCcEEEeCC-CCHHHHHH
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-----KGTFLVAGG-YDREDGNK 333 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~Gg-it~~~a~~ 333 (399)
.. ....+++++.++...++|+|.+-+..+. ...+.+..+.+.+ ++|++.+.+ ......++
T Consensus 163 --~~----~~~~~eAi~Ra~ay~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~e 228 (285)
T TIGR02320 163 --IL----GKGMEDALKRAEAYAEAGADGIMIHSRK--------KDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDE 228 (285)
T ss_pred --cc----cCCHHHHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHH
Confidence 00 1236889999999999999998875211 1122333333333 358766543 21123555
Q ss_pred HHHcCCCcEEEechHH
Q 015862 334 AIAEGRADLVVYGRLF 349 (399)
Q Consensus 334 ~L~~G~~D~V~~gR~~ 349 (399)
+-+-| +..|+++-.+
T Consensus 229 L~~lG-~~~v~~~~~~ 243 (285)
T TIGR02320 229 FRDAG-ISVVIYANHL 243 (285)
T ss_pred HHHcC-CCEEEEhHHH
Confidence 55667 9999998433
No 297
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=95.68 E-value=0.3 Score=45.36 Aligned_cols=141 Identities=23% Similarity=0.218 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEE
Q 015862 177 EIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIR 255 (399)
Q Consensus 177 eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vr 255 (399)
||-.++..++++ +.++|+|.+=+|+..| ...+...++..++. +.. .+.+.
T Consensus 60 DIg~tv~~~~~~---~~~~gad~~Tvh~~~G-------------------------~~~l~~~~~~~~~~-~~~~~~v~~ 110 (216)
T cd04725 60 DIPNTVAAAAEA---LLGLGADAVTVHPYGG-------------------------SDMLKAALEAAEEK-GKGLFAVTV 110 (216)
T ss_pred chHHHHHHHHHH---HHhcCCCEEEECCcCC-------------------------HHHHHHHHHHHhcc-CCeEEEEEc
Confidence 455555555444 4456999999997664 12233333333321 223 34556
Q ss_pred ecCCccc--CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHH---
Q 015862 256 LSPFANY--MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDRE--- 329 (399)
Q Consensus 256 ls~~~~~--~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~--- 329 (399)
++..+.. .........+....+++...+.|++-+-++.. ....+++.. +.-++.+.|+.++
T Consensus 111 lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~-------------~~~~i~~~~~~~~~~ltPGI~~~~~~ 177 (216)
T cd04725 111 LSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGAT-------------EPEALRRALGPDFLILTPGIGAQGSG 177 (216)
T ss_pred CCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCc-------------chHHHHHhhCCCCeEEcCCcCCCCCc
Confidence 6642211 11001122344556777777888665544321 112234433 3346778888555
Q ss_pred -------HHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 330 -------DGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 330 -------~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
+.+++++.| +|++.+||+++..++....++
T Consensus 178 ~dq~r~~~~~~a~~~g-~~~ivvGR~I~~a~~p~~~~~ 214 (216)
T cd04725 178 DDQKRGGTPEDAIRAG-ADYIVVGRPITQAADPVAAAE 214 (216)
T ss_pred cccccccCHHHHHHcC-CcEEEEChhhccCCCHHHHHh
Confidence 678888888 999999999999998655543
No 298
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.68 E-value=0.96 Score=45.11 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=72.0
Q ss_pred chhhhhHHHHHHHHHHHHHhCCC---ceEEEecCCcccC--CC----CCCChHHHHHHHHHhhh-hhCceEEEEeCCCcc
Q 015862 228 SLENRCRFALEIVEAVSNEIGAD---RVGIRLSPFANYM--ES----GDSNPEALGLYMAESLN-KYGILYCHMVEPRMK 297 (399)
Q Consensus 228 slenR~r~~~eii~avR~~vg~~---~v~vrls~~~~~~--~~----~~~~~~~~~~~l~~~Le-~~Gvd~l~v~~~~~~ 297 (399)
++|...+..+|+++..+.. |-. .|+ ++...++.. +. ....+.+++.++++... ..|+|.+-++-++..
T Consensus 147 pfeENI~~TrevVe~Ah~~-GvsVEaELG-~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~H 224 (357)
T TIGR01520 147 PIEENIEICVKYLKRMAKI-KMWLEIEIG-ITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVH 224 (357)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCEEEEEec-ccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeecccc
Confidence 5788899999999986553 321 233 333322221 00 11235677888887653 348999998877754
Q ss_pred cccc-cCC--CchhhHHH----HhhcCCc------EEEeCC--CCHHHHHHHHHcCCCcEEEech
Q 015862 298 TREE-KSE--CPHSLLPM----RKAFKGT------FLVAGG--YDREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 298 ~~~~-~~~--~~~~~~~i----r~~~~~p------vi~~Gg--it~~~a~~~L~~G~~D~V~~gR 347 (399)
..+. ..+ ..+.++.| ++.+++| ++.=|+ ++.++..++++.|.+- |=++.
T Consensus 225 G~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~K-INi~T 288 (357)
T TIGR01520 225 GVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVK-MNIDT 288 (357)
T ss_pred CCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeE-EEeCc
Confidence 4442 323 34567778 4566777 665554 5789999999999554 44443
No 299
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=95.65 E-value=0.018 Score=57.29 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc----cccCCCchhhHHH
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR----EEKSECPHSLLPM 312 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~----~~~~~~~~~~~~i 312 (399)
.+.++.++. .|. .|...+. +...++..++.|+|.+-+.....+.- ........++.++
T Consensus 117 ~~~i~~~~~-~g~-~v~~~v~----------------~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev 178 (336)
T COG2070 117 AEFVARLKA-AGI-KVIHSVI----------------TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEV 178 (336)
T ss_pred HHHHHHHHH-cCC-eEEEEeC----------------CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHH
Confidence 677788877 332 3333332 23467778899999876543211110 0111223467889
Q ss_pred HhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 313 RKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 313 r~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
++.++ +|||+.||| |...+..+|.-| +|+|-||..|++-.
T Consensus 179 ~~~~~~iPViAAGGI~dg~~i~AAlalG-A~gVq~GT~Fl~t~ 220 (336)
T COG2070 179 VDAVDGIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATK 220 (336)
T ss_pred HHHhcCCCEEEecCccChHHHHHHHHhc-cHHHHhhhhhhccc
Confidence 99999 899999999 999999999999 99999999999754
No 300
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.65 E-value=0.068 Score=51.57 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF 316 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~ 316 (399)
.+.++.+|+..+...|+|-.. +.+++.+ ..+.|+||+-+..- .+ .......+.+++..
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------------t~eea~~----A~~~gaD~I~ld~~--~p----~~l~~~~~~~~~~~ 228 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------------SLEEALA----AAEAGADILQLDKF--SP----EELAELVPKLRSLA 228 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------------CHHHHHH----HHHcCCCEEEECCC--CH----HHHHHHHHHHhccC
Confidence 467788888775435555332 2333332 23679999987421 11 01123444455443
Q ss_pred -CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 317 -KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 317 -~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
++|+++.||++++.+.++++.| +|+|+++....+.
T Consensus 229 ~~i~i~AsGGI~~~ni~~~~~~G-vd~I~vsai~~a~ 264 (272)
T cd01573 229 PPVLLAAAGGINIENAAAYAAAG-ADILVTSAPYYAK 264 (272)
T ss_pred CCceEEEECCCCHHHHHHHHHcC-CcEEEEChhhcCc
Confidence 6899999999999999999998 9999887765433
No 301
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.63 E-value=0.39 Score=46.82 Aligned_cols=136 Identities=15% Similarity=0.086 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCc-hhhhhHHHHHHHHHHHHHhC-CC-ceEEEecCCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGS-LENRCRFALEIVEAVSNEIG-AD-RVGIRLSPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGs-lenR~r~~~eii~avR~~vg-~~-~v~vrls~~~~~ 262 (399)
.+..++..++|.-||.|--.. ..+|...++|. +..+ ....+-|++++++.. ++ .|..|.-...
T Consensus 95 ~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~k~lv~~-ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~-- 160 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQV-----------NPKRCGHLEGKRLIST-EEMTGKIEAAVEAREDEDFTIIARTDARE-- 160 (294)
T ss_pred HHHHHHHHHcCCeEEEEECCC-----------CccccCCCCCccccCH-HHHHHHHHHHHHhccCCCeEEEEEecccc--
Confidence 455677789999999986432 34666666553 2222 334455555555543 33 4667876521
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcE---EEeCCCCH-HHHHHHHHcC
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTF---LVAGGYDR-EDGNKAIAEG 338 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pv---i~~Ggit~-~~a~~~L~~G 338 (399)
....+++++-++...++|+|.|-+... ...+.++.+.+.++.|+ +..++-++ ...+++-+-|
T Consensus 161 -----~~g~deaI~Ra~aY~eAGAD~ifi~~~---------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG 226 (294)
T TIGR02319 161 -----SFGLDEAIRRSREYVAAGADCIFLEAM---------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIG 226 (294)
T ss_pred -----cCCHHHHHHHHHHHHHhCCCEEEecCC---------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcC
Confidence 224688999999999999999887432 13456778888888886 34443333 3455555566
Q ss_pred CCcEEEechHHh
Q 015862 339 RADLVVYGRLFL 350 (399)
Q Consensus 339 ~~D~V~~gR~~i 350 (399)
+.+|.++-.++
T Consensus 227 -~~~v~~~~~~~ 237 (294)
T TIGR02319 227 -YNLAIYPLSGW 237 (294)
T ss_pred -CcEEEEcHHHH
Confidence 99999995443
No 302
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.32 Score=46.00 Aligned_cols=132 Identities=22% Similarity=0.314 Sum_probs=76.0
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--c-eEEE-ecCCcc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--R-VGIR-LSPFAN 261 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~-v~vr-ls~~~~ 261 (399)
..+++.+.+.|.|+|-+|+..| .+.++++++..... . ++|= ++..++
T Consensus 79 ~~~~~~~~~~g~d~vtvH~~~G-----------------------------~~~~~~~~e~~~~~~~~vl~vT~lts~~~ 129 (240)
T COG0284 79 ALAAKAAADLGADAVTVHAFGG-----------------------------FDMLRAAKEALEAGGPFVLAVTSLTSMGE 129 (240)
T ss_pred HHHHHHhhhcCCcEEEEeCcCC-----------------------------HHHHHHHHHHHhhcCceEEEEEeCCCchh
Confidence 4444558889999999997664 45666666665432 2 3332 221111
Q ss_pred c--CCCC-CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCC-cEEEeCCCC-------HHH
Q 015862 262 Y--MESG-DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKG-TFLVAGGYD-------RED 330 (399)
Q Consensus 262 ~--~~~~-~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~-pvi~~Ggit-------~~~ 330 (399)
. ...+ .....+...++++.....|+|.+-++ .+..+.+|+..+. -++.+=||- ...
T Consensus 130 ~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~-------------~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~ 196 (240)
T COG0284 130 LQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCS-------------AEEVAAIREILGPDFLILTPGIGAGSQGGDQGR 196 (240)
T ss_pred hhhhhccccchHHHHHHHHHHHhccCCceEEEcC-------------HHHHHHHHHhcCCCcEEECCCcCcCcCCCCccc
Confidence 1 1111 12234556667777777788776542 2345567777641 133222221 111
Q ss_pred ---HHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 331 ---GNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 331 ---a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
...++..| +|++.+||+.+..++=+..++
T Consensus 197 ~~t~~~A~~~G-ad~ivVGR~I~~a~~p~~a~~ 228 (240)
T COG0284 197 VMTPGEAVRAG-ADYIVVGRPITQAGDPVAAAR 228 (240)
T ss_pred ccCHHHHHhcC-CCEEEEChhhhcCCChHHHHH
Confidence 34556666 999999999999887666554
No 303
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.60 E-value=0.15 Score=49.34 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=85.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR 251 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~ 251 (399)
+++.+.+..+++.+ .+.|.|||-+.+.-|. |. -=|.+.|.+++..+++.++. .-+
T Consensus 15 ~iD~~~~~~~i~~l-------~~~Gv~Gi~~~GstGE----~~-----------~Ls~~Er~~~~~~~~~~~~~---~~~ 69 (285)
T TIGR00674 15 SVDFAALEKLIDFQ-------IENGTDAIVVVGTTGE----SP-----------TLSHEEHKKVIEFVVDLVNG---RVP 69 (285)
T ss_pred CcCHHHHHHHHHHH-------HHcCCCEEEECccCcc----cc-----------cCCHHHHHHHHHHHHHHhCC---CCe
Confidence 46666666666544 5799999998765541 11 12567787776666655432 124
Q ss_pred eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE------eCC
Q 015862 252 VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV------AGG 325 (399)
Q Consensus 252 v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~Gg 325 (399)
|.+=++ ..+.++++++++..++.|+|.+-+..|.+..+ .......+.+.|.++++.||+. +|-
T Consensus 70 vi~gv~----------~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~ 138 (285)
T TIGR00674 70 VIAGTG----------SNATEEAISLTKFAEDVGADGFLVVTPYYNKP-TQEGLYQHFKAIAEEVDLPIILYNVPSRTGV 138 (285)
T ss_pred EEEeCC----------CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-CHHHHHHHHHHHHhcCCCCEEEEECcHHhcC
Confidence 544333 23567899999999999999999887765422 1112334566677777888662 332
Q ss_pred -CCHHHHHHHHHcCCCcEEEe
Q 015862 326 -YDREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 326 -it~~~a~~~L~~G~~D~V~~ 345 (399)
++++..+++.+.. .++++
T Consensus 139 ~l~~~~l~~L~~~~--~v~gi 157 (285)
T TIGR00674 139 SLYPETVKRLAEEP--NIVAI 157 (285)
T ss_pred CCCHHHHHHHHcCC--CEEEE
Confidence 3888888887644 34444
No 304
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.57 E-value=0.51 Score=44.81 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=85.9
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC--
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM-- 263 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~-- 263 (399)
.+-|+...++|+.+|=|. +....||||++ -++.||+++.- ||..|==..+.+.
T Consensus 64 ~~~A~~y~~~GA~aISVl----------------Te~~~F~Gs~~--------~l~~v~~~v~~-PvL~KDFIid~~QI~ 118 (247)
T PRK13957 64 VQIAKTYETLGASAISVL----------------TDQSYFGGSLE--------DLKSVSSELKI-PVLRKDFILDEIQIR 118 (247)
T ss_pred HHHHHHHHHCCCcEEEEE----------------cCCCcCCCCHH--------HHHHHHHhcCC-CEEeccccCCHHHHH
Confidence 556677788999999544 55567899954 55666666521 4433200000000
Q ss_pred -----CC------CCCChHHHHHHHHHhhhhhCceE-EEEeCCCc-------ccc---------cccCCCchhhHHHHhh
Q 015862 264 -----ES------GDSNPEALGLYMAESLNKYGILY-CHMVEPRM-------KTR---------EEKSECPHSLLPMRKA 315 (399)
Q Consensus 264 -----~~------~~~~~~~~~~~l~~~Le~~Gvd~-l~v~~~~~-------~~~---------~~~~~~~~~~~~ir~~ 315 (399)
|. -.-.+.++..++.+...+.|++. ++||...- +.. ..-.-.......+...
T Consensus 119 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ 198 (247)
T PRK13957 119 EARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAF 198 (247)
T ss_pred HHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhh
Confidence 00 00112234555666666777764 36653210 000 0000012334556666
Q ss_pred cC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 316 FK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 316 ~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
++ ..+|+-+|+ |++++..+.. + +|.|-+|..++..+|....+++
T Consensus 199 ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 199 LPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCCCCHHHHHHH
Confidence 64 346777899 8999998664 5 9999999999999998777654
No 305
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.56 E-value=0.2 Score=48.39 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=81.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD- 250 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~- 250 (399)
.+..+.+.+.++ ...++|.|||-+.+.-|. |. -=+.+.|.+++..++ +.+..+
T Consensus 17 ~iD~~~~~~~i~-------~l~~~Gv~gl~v~GstGE----~~-----------~lt~~Er~~l~~~~~----~~~~~~~ 70 (284)
T cd00950 17 SVDFDALERLIE-------FQIENGTDGLVVCGTTGE----SP-----------TLSDEEHEAVIEAVV----EAVNGRV 70 (284)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECCCCcc----hh-----------hCCHHHHHHHHHHHH----HHhCCCC
Confidence 355555555554 446799999998865541 11 124567766544444 444433
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE------eC
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV------AG 324 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~G 324 (399)
+|.+=++ ..+.++++++++..++.|+|.+-+..|.+..+ .......+.+.|-++.+.||+. +|
T Consensus 71 ~vi~gv~----------~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~-~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g 139 (284)
T cd00950 71 PVIAGTG----------SNNTAEAIELTKRAEKAGADAALVVTPYYNKP-SQEGLYAHFKAIAEATDLPVILYNVPGRTG 139 (284)
T ss_pred cEEeccC----------CccHHHHHHHHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHhcCCCCEEEEEChhHhC
Confidence 5554333 23567899999999999999998877654322 1112334566677777888652 33
Q ss_pred C-CCHHHHHHHHHcCCC
Q 015862 325 G-YDREDGNKAIAEGRA 340 (399)
Q Consensus 325 g-it~~~a~~~L~~G~~ 340 (399)
. ++++..+++.+...+
T Consensus 140 ~~ls~~~~~~L~~~p~v 156 (284)
T cd00950 140 VNIEPETVLRLAEHPNI 156 (284)
T ss_pred CCCCHHHHHHHhcCCCE
Confidence 3 388888888865433
No 306
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=95.55 E-value=0.18 Score=47.22 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=44.9
Q ss_pred hhhCceEEEEeCCCcccccccCCCchhhHHHH------hhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 282 NKYGILYCHMVEPRMKTREEKSECPHSLLPMR------KAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 282 e~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir------~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
.+.|+|+|+++.+.|...... ....-+..++ ...+.-|-++.|++++....+.+--.++=|.+|..++++-
T Consensus 144 ~~~GAd~VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 144 AEVGADRIELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHhCcCEEEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHH
Confidence 455788888887765432211 1111122222 2345667777888999888865545588899999999865
No 307
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.54 E-value=0.23 Score=47.74 Aligned_cols=121 Identities=20% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
++.|+.|.+||+=+|-+---- |.- .|. -||- .|+. -.+.|++||+.|. -||.=++...
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~---------~~~-~~~--~~~v--~R~~-~~~~I~~Ik~~V~-iPVIGi~K~~------ 75 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERV---------PAD-IRA--AGGV--ARMA-DPKMIKEIMDAVS-IPVMAKVRIG------ 75 (283)
T ss_pred HHHHHHHHHcCceEEeeeccC---------chh-hhh--cCCe--eecC-CHHHHHHHHHhCC-CCeEEeeehh------
Confidence 678999999999888752111 111 111 1331 1111 2678899999983 2643222220
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEE
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 344 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 344 (399)
...=++.|+++|+|+|..+.. ..+..++...+|+.++.|+++ ++ |.++|..+++.| +|+|+
T Consensus 76 --------~~~Ea~~L~eaGvDiIDaT~r-------~rP~~~~~~~iK~~~~~l~MA--D~stleEal~a~~~G-ad~I~ 137 (283)
T cd04727 76 --------HFVEAQILEALGVDMIDESEV-------LTPADEEHHIDKHKFKVPFVC--GARNLGEALRRISEG-AAMIR 137 (283)
T ss_pred --------HHHHHHHHHHcCCCEEeccCC-------CCcHHHHHHHHHHHcCCcEEc--cCCCHHHHHHHHHCC-CCEEE
Confidence 133466788999999963322 112356788899888777754 45 899999999999 99998
Q ss_pred ec
Q 015862 345 YG 346 (399)
Q Consensus 345 ~g 346 (399)
--
T Consensus 138 TT 139 (283)
T cd04727 138 TK 139 (283)
T ss_pred ec
Confidence 75
No 308
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.50 E-value=0.35 Score=47.07 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++||++|-+.+.. ++--+ -..| ||-+ . ..-.++.++.|.+++. -||.+.+-.
T Consensus 25 ~lSAri~e~aGf~ai~~ss~~---va~sl-----G~pD--~g~l-~-~~e~~~~~~~I~~~~~-lPv~aD~d~------- 84 (290)
T TIGR02321 25 PLVAKLAEQAGFGGIWGSGFE---LSASY-----AVPD--ANIL-S-MSTHLEMMRAIASTVS-IPLIADIDT------- 84 (290)
T ss_pred HHHHHHHHHcCCCEEEECHHH---HHHHC-----CCCC--cccC-C-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 678899999999999976532 11001 1223 3321 1 1223455555555552 278886632
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc----cc----CCCchhhHHHHhhc----CCcEEEeCCC-------
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE----EK----SECPHSLLPMRKAF----KGTFLVAGGY------- 326 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~----~~----~~~~~~~~~ir~~~----~~pvi~~Ggi------- 326 (399)
|.+++. ...+.++.++++|+.-|++-.......- .. .+..+++.+||.+. +.+++.+.+.
T Consensus 85 GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~ 163 (290)
T TIGR02321 85 GFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_pred CCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Confidence 223444 4778899999999999999654322110 00 11223455555433 2335544432
Q ss_pred ----CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 327 ----DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 327 ----t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
..+.++.+.+.| +|.|.+ -+.+.+++.+.++.+..+
T Consensus 164 g~deAI~Ra~aY~eAG-AD~ifv-~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 164 GQQEAVRRGQAYEEAG-ADAILI-HSRQKTPDEILAFVKSWP 203 (290)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEe-cCCCCCHHHHHHHHHhcC
Confidence 134466777888 999998 224588999999888644
No 309
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.49 E-value=0.29 Score=48.57 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=77.4
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-C-ceEEEecCCc-ccCCC
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA-D-RVGIRLSPFA-NYMES 265 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~-~-~v~vrls~~~-~~~~~ 265 (399)
.+.|.+.|+|+|-+|.-- |+..|+++ +.+ +.+|.+++-. . |+.+-+-+-. ....-
T Consensus 152 VedAlrLGAdAV~~tvy~-------------------Gs~~E~~m--l~~-l~~i~~ea~~~GlPlv~~~YpRG~~i~~~ 209 (348)
T PRK09250 152 VEDALRLGAVAVGATIYF-------------------GSEESRRQ--IEE-ISEAFEEAHELGLATVLWSYLRNSAFKKD 209 (348)
T ss_pred HHHHHHCCCCEEEEEEec-------------------CCHHHHHH--HHH-HHHHHHHHHHhCCCEEEEecccCcccCCc
Confidence 345889999999988532 44445443 333 3333343321 2 5554332211 11110
Q ss_pred CC-CChHHHHHHHHHhhhhhCceEEEEeCCCc----ccc---------cccCC---CchhhHHHHhhc---CCcEEEeCC
Q 015862 266 GD-SNPEALGLYMAESLNKYGILYCHMVEPRM----KTR---------EEKSE---CPHSLLPMRKAF---KGTFLVAGG 325 (399)
Q Consensus 266 ~~-~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~----~~~---------~~~~~---~~~~~~~ir~~~---~~pvi~~Gg 325 (399)
.. ....+.....++.-.+.|+|+|-+--+.- ... +.... ..+..+.+.+.. ++||+..||
T Consensus 210 ~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG 289 (348)
T PRK09250 210 GDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGG 289 (348)
T ss_pred ccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCC
Confidence 00 11134455566666888999998754321 110 00111 112334444554 688888877
Q ss_pred C--CH----HHHHHH---HHcCCCcEEEechHHhhCCc
Q 015862 326 Y--DR----EDGNKA---IAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 326 i--t~----~~a~~~---L~~G~~D~V~~gR~~iadPd 354 (399)
= +. +.+..+ ++.| +-.|.+||=.+..|+
T Consensus 290 ~k~~~~e~L~~v~~a~~~i~aG-a~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 290 ASKGEDDLLDAVRTAVINKRAG-GMGLIIGRKAFQRPM 326 (348)
T ss_pred CCCCHHHHHHHHHHHHHhhhcC-CcchhhchhhhcCCc
Confidence 4 33 345667 7766 889999999999884
No 310
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.47 E-value=0.3 Score=47.64 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=90.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++||++|-+.+.. .+-. ..=..| +| +... .-.++.++.|.+++. -||.+.+-.
T Consensus 26 a~SArl~e~aGf~ai~~sg~~---~~as----~lG~pD--~g-~l~~-~e~~~~~~~I~~~~~-lPv~aD~dt------- 86 (294)
T TIGR02319 26 ALSAKVIQQAGFPAVHMTGSG---TSAS----MLGLPD--LG-FTSV-SEQAINAKNIVLAVD-VPVIMDADA------- 86 (294)
T ss_pred HHHHHHHHHcCCCEEEecHHH---HHHH----HcCCCC--cC-CCCH-HHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 678899999999999864322 1100 001123 12 1111 123455555555552 278886632
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc----cc--cCCCchhhHHHHhhc---C-CcEEEeCC--------C-
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR----EE--KSECPHSLLPMRKAF---K-GTFLVAGG--------Y- 326 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~----~~--~~~~~~~~~~ir~~~---~-~pvi~~Gg--------i- 326 (399)
|.+++.. ..+.++.++++|+.-||+-....... .. -.+..+++.+||.+. . .+++.+.+ +
T Consensus 87 GyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~d 165 (294)
T TIGR02319 87 GYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLD 165 (294)
T ss_pred CCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHH
Confidence 2244444 57889999999999999965432110 00 012224555555443 2 23544443 2
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 327 -DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 327 -t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
..+.++.+.+.| +|+|.+ +.+.+++...++.+-.+
T Consensus 166 eaI~Ra~aY~eAG-AD~ifi--~~~~~~~ei~~~~~~~~ 201 (294)
T TIGR02319 166 EAIRRSREYVAAG-ADCIFL--EAMLDVEEMKRVRDEID 201 (294)
T ss_pred HHHHHHHHHHHhC-CCEEEe--cCCCCHHHHHHHHHhcC
Confidence 134566777888 999999 44789999999888643
No 311
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.43 E-value=0.3 Score=47.41 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=80.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD- 250 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~- 250 (399)
.++.+.++++++. ..+.|.|||-+.+.-|. |. -=|.+.|.+++..+++++ ..+
T Consensus 18 ~iD~~~l~~~i~~-------l~~~Gv~gi~~~Gs~GE----~~-----------~ls~~Er~~~~~~~~~~~----~~~~ 71 (292)
T PRK03170 18 SVDFAALRKLVDY-------LIANGTDGLVVVGTTGE----SP-----------TLTHEEHEELIRAVVEAV----NGRV 71 (292)
T ss_pred CcCHHHHHHHHHH-------HHHcCCCEEEECCcCCc----cc-----------cCCHHHHHHHHHHHHHHh----CCCC
Confidence 3555555555554 46699999998766542 11 125677877655555554 333
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE------eC
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV------AG 324 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~G 324 (399)
+|.+=++ ..+.++++++++..++.|+|.+-+..|.+..+ .......+.+.|-++++.||+. +|
T Consensus 72 ~vi~gv~----------~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~-~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g 140 (292)
T PRK03170 72 PVIAGTG----------SNSTAEAIELTKFAEKAGADGALVVTPYYNKP-TQEGLYQHFKAIAEATDLPIILYNVPGRTG 140 (292)
T ss_pred cEEeecC----------CchHHHHHHHHHHHHHcCCCEEEECCCcCCCC-CHHHHHHHHHHHHhcCCCCEEEEECccccC
Confidence 5554333 23567899999999999999999877754322 1112234556677777888652 23
Q ss_pred C-CCHHHHHHHHHcC
Q 015862 325 G-YDREDGNKAIAEG 338 (399)
Q Consensus 325 g-it~~~a~~~L~~G 338 (399)
. ++++...++.+..
T Consensus 141 ~~l~~~~~~~L~~~p 155 (292)
T PRK03170 141 VDILPETVARLAEHP 155 (292)
T ss_pred CCCCHHHHHHHHcCC
Confidence 2 3788877775433
No 312
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=95.42 E-value=1 Score=42.84 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCccc--
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANY-- 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~-- 262 (399)
++-|+...++|+.+|=|- +....|.||+ |-++.||+++.- ||..| +=.+...
T Consensus 69 ~~ia~~Ye~~GAa~iSVL----------------Td~~~F~Gs~--------e~L~~v~~~v~~-PvL~KDFiiD~yQI~ 123 (254)
T COG0134 69 VEIAKAYEEGGAAAISVL----------------TDPKYFQGSF--------EDLRAVRAAVDL-PVLRKDFIIDPYQIY 123 (254)
T ss_pred HHHHHHHHHhCCeEEEEe----------------cCccccCCCH--------HHHHHHHHhcCC-CeeeccCCCCHHHHH
Confidence 444566677899999866 4455678884 456888888843 65553 1111000
Q ss_pred C--CCCC--------CChHHHHHHHHHhhhhhCceEE-EEeCCCc-------cccc---ccC------CCchhhHHHHhh
Q 015862 263 M--ESGD--------SNPEALGLYMAESLNKYGILYC-HMVEPRM-------KTRE---EKS------ECPHSLLPMRKA 315 (399)
Q Consensus 263 ~--~~~~--------~~~~~~~~~l~~~Le~~Gvd~l-~v~~~~~-------~~~~---~~~------~~~~~~~~ir~~ 315 (399)
. ..|- -.+.++..++.....+.|.+.+ ++|...- +..- ... -..+....+...
T Consensus 124 ~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~ 203 (254)
T COG0134 124 EARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPL 203 (254)
T ss_pred HHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhh
Confidence 0 0000 0112334555666667787753 5543210 0000 000 012233445555
Q ss_pred cC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 316 FK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 316 ~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
++ ..+|+-+|| |+++++.+...| +|.+-+|-.+|..++..+.+++
T Consensus 204 ~p~~~~~IsESGI~~~~dv~~l~~~g-a~a~LVG~slM~~~~~~~a~~~ 251 (254)
T COG0134 204 IPKDVILISESGISTPEDVRRLAKAG-ADAFLVGEALMRADDPEEALRE 251 (254)
T ss_pred CCCCcEEEecCCCCCHHHHHHHHHcC-CCEEEecHHHhcCCCHHHHHHH
Confidence 54 346666788 899999999998 9999999999999999776654
No 313
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.40 E-value=0.38 Score=44.70 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=36.2
Q ss_pred chhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcH
Q 015862 306 PHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 306 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl 355 (399)
..+++.++.-++ ++++.+||++++.+.+.++.| + .+.+|+..+.++++
T Consensus 143 ~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag-~-v~~vggs~L~~~~~ 191 (212)
T PRK05718 143 VKMLKALAGPFPDVRFCPTGGISPANYRDYLALP-N-VLCIGGSWMVPKDA 191 (212)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC-C-EEEEEChHhCCcch
Confidence 456777777775 789999999999999999998 3 44445666655544
No 314
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=95.38 E-value=0.23 Score=46.31 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHhhcCCcE--EEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHH
Q 015862 311 PMRKAFKGTF--LVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRF 359 (399)
Q Consensus 311 ~ir~~~~~pv--i~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~ 359 (399)
.+++.=..|| ++.||+ ||.||.-+++-| ||.|.+|.+++...+-.++.
T Consensus 200 ~~~~~grLPVvnFAAGGvATPADAALMM~LG-adGVFVGSGIFKS~~P~~~A 250 (296)
T COG0214 200 EVAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSNPEKRA 250 (296)
T ss_pred HHHHhCCCCeEeecccCcCChhHHHHHHHhC-CCeEEecccccCCCCHHHHH
Confidence 3444434665 578999 999999999999 99999999988655544443
No 315
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=95.32 E-value=0.073 Score=61.43 Aligned_cols=104 Identities=17% Similarity=0.060 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc--------ccCCC
Q 015862 234 RFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--------EKSEC 305 (399)
Q Consensus 234 r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--------~~~~~ 305 (399)
.-+.++|..+|+..+.-+|+||+..... +. .++.-+.++|+|+|.|+...-+.-. ...|+
T Consensus 981 eDL~qlI~~Lk~~~~~~~I~VKl~a~~~---------vg---~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~ 1048 (1485)
T PRK11750 981 EDLAQLIFDLKQVNPKALVSVKLVSEPG---------VG---TIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPW 1048 (1485)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEccCCC---------cc---HHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccH
Confidence 3478889999998764589999986321 11 1343456789999999764321100 11111
Q ss_pred chhhHHHHhh-----c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 306 PHSLLPMRKA-----F--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 306 ~~~~~~ir~~-----~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
...+.++.+. + .+.+++.|++ |+.++.+++.-| ||.|++||+++
T Consensus 1049 e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLG-Ad~~~~gt~~l 1100 (1485)
T PRK11750 1049 ELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILG-AESFGFGTGPM 1100 (1485)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcC-CcccccchHHH
Confidence 1123222222 2 3679999999 999999999999 99999999986
No 316
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.30 E-value=0.34 Score=47.39 Aligned_cols=124 Identities=21% Similarity=0.218 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCC-CchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYG-GSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFA 260 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yG-GslenR~r~~~eii~avR~~vg~~-~v~vrls~~~ 260 (399)
+.+.+-+++..+.|.|||-+.+.-| |+- -|.+.|.++ ++.++++++.. ||.+=++
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttG----------------E~~~Ls~eEr~~v----~~~~v~~~~grvpviaG~g--- 81 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTG----------------ESPTLTLEERKEV----LEAVVEAVGGRVPVIAGVG--- 81 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc----------------cchhcCHHHHHHH----HHHHHHHHCCCCcEEEecC---
Confidence 3455555666889999999887664 221 256777655 55666666543 4554333
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC------C-CCHHHHHH
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG------G-YDREDGNK 333 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G------g-it~~~a~~ 333 (399)
.+..++++++++..++.|+|.+-+..|.+..+. ......+.+.|.++++.|+|.-. . ++++...+
T Consensus 82 -------~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~-~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~ 153 (299)
T COG0329 82 -------SNSTAEAIELAKHAEKLGADGILVVPPYYNKPS-QEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIAR 153 (299)
T ss_pred -------CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC-hHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHH
Confidence 345678999999999999999998877654332 11223456667777888865332 2 36787777
Q ss_pred HHHc
Q 015862 334 AIAE 337 (399)
Q Consensus 334 ~L~~ 337 (399)
+-+.
T Consensus 154 la~~ 157 (299)
T COG0329 154 LAEH 157 (299)
T ss_pred HhcC
Confidence 7663
No 317
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=95.29 E-value=0.093 Score=54.11 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=73.0
Q ss_pred cCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc
Q 015862 219 NDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT 298 (399)
Q Consensus 219 N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~ 298 (399)
+.+.|-|+ ..-+.+.|..+|++.+..+|+||+.+.. ..++ ++--..++++|+|.|+...-+.
T Consensus 279 ~pHHDiys------ieDLaqlI~dLk~~~~~~~I~VKlva~~---------~v~~---iaagvakA~AD~I~IdG~~GGT 340 (485)
T COG0069 279 PPHHDIYS------IEDLAQLIKDLKEANPWAKISVKLVAEH---------GVGT---IAAGVAKAGADVITIDGADGGT 340 (485)
T ss_pred CCcccccC------HHHHHHHHHHHHhcCCCCeEEEEEeccc---------chHH---HHhhhhhccCCEEEEcCCCCcC
Confidence 35677776 3456788899999887668999998731 2222 1112567899999986532111
Q ss_pred cc--------ccCCCchhhHH----HHhh-c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 299 RE--------EKSECPHSLLP----MRKA-F--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 299 ~~--------~~~~~~~~~~~----ir~~-~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
-. ...|+.-.+.. +++. + .+.+++.|++ |..|..+++.-| +|.|.+|++.+.
T Consensus 341 GAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLG-Ad~v~~gTa~li 408 (485)
T COG0069 341 GASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALG-ADAVGFGTAALV 408 (485)
T ss_pred CCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhC-cchhhhchHHHH
Confidence 00 11111111222 2221 1 2458899999 999999999999 999999999764
No 318
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.21 E-value=0.065 Score=49.67 Aligned_cols=81 Identities=19% Similarity=0.073 Sum_probs=59.0
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
+..++++.+++.|+++||+..-.. ......+.++.||+.+++||+.-+.+ ++++++.+++.| +|+|.++-..+.
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~----~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G-ad~v~l~~~~~~ 106 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPK----YFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAALD 106 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCcc----ccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC-CCEEEEeeccCC
Confidence 467799999999999999863211 11123467888999899999876666 788999999999 999988766554
Q ss_pred CCcHHHHH
Q 015862 352 NPDLPRRF 359 (399)
Q Consensus 352 dPdl~~k~ 359 (399)
. +..+++
T Consensus 107 ~-~~~~~~ 113 (217)
T cd00331 107 D-EQLKEL 113 (217)
T ss_pred H-HHHHHH
Confidence 3 444333
No 319
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.18 E-value=0.34 Score=47.04 Aligned_cols=129 Identities=19% Similarity=0.136 Sum_probs=80.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh-CCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEA-GFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 250 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~a-GfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~ 250 (399)
.+..+.+..+++. ..+. |.+||-+.+.-| +|. -=+.+.|.+++..++++++. .-
T Consensus 17 ~iD~~~~~~~i~~-------l~~~~Gv~gi~~~GstG----E~~-----------~Lt~~Er~~~~~~~~~~~~~---~~ 71 (288)
T cd00954 17 EINEDVLRAIVDY-------LIEKQGVDGLYVNGSTG----EGF-----------LLSVEERKQIAEIVAEAAKG---KV 71 (288)
T ss_pred CCCHHHHHHHHHH-------HHhcCCCCEEEECcCCc----Ccc-----------cCCHHHHHHHHHHHHHHhCC---CC
Confidence 3555555555544 4567 999999876543 121 12567787766666655432 12
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEE------e
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLV------A 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~------~ 323 (399)
+|.+=++ ..+.++++++++..++.|+|.+-+..|.+..+ .......+.+.|-+++ +.||+. +
T Consensus 72 ~viagv~----------~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~-~~~~i~~~~~~v~~a~~~lpi~iYn~P~~t 140 (288)
T cd00954 72 TLIAHVG----------SLNLKESQELAKHAEELGYDAISAITPFYYKF-SFEEIKDYYREIIAAAASLPMIIYHIPALT 140 (288)
T ss_pred eEEeccC----------CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCCEEEEeCcccc
Confidence 4554333 23467799999999999999998877755432 1122344666777888 788663 2
Q ss_pred CC-CCHHHHHHHHH
Q 015862 324 GG-YDREDGNKAIA 336 (399)
Q Consensus 324 Gg-it~~~a~~~L~ 336 (399)
|. ++++...++.+
T Consensus 141 g~~l~~~~~~~L~~ 154 (288)
T cd00954 141 GVNLTLEQFLELFE 154 (288)
T ss_pred CCCCCHHHHHHHhc
Confidence 32 37888887775
No 320
>PLN02858 fructose-bisphosphate aldolase
Probab=95.17 E-value=0.84 Score=53.62 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=88.7
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE---EecCCccc-
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI---RLSPFANY- 262 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v---rls~~~~~- 262 (399)
+..++|.++||+-|-|.+.| -++|+..+..+|+++..+.. |- .|-. ++...++.
T Consensus 1183 ~~i~~ai~~Gf~SVM~DgS~--------------------l~~eeNi~~t~~vv~~Ah~~-gv-~VEaElG~v~g~e~~~ 1240 (1378)
T PLN02858 1183 HELLEALELGFDSVMVDGSH--------------------LSFTENISYTKSISSLAHSK-GL-MVEAELGRLSGTEDGL 1240 (1378)
T ss_pred HHHHHHHHhCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEecccCCccCCc
Confidence 34677888999999999766 15788899999999998874 21 1222 22222221
Q ss_pred CCCC---CCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc-CC--CchhhHHHHhhc---CCcEEEeCC--CCHHHH
Q 015862 263 MESG---DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK-SE--CPHSLLPMRKAF---KGTFLVAGG--YDREDG 331 (399)
Q Consensus 263 ~~~~---~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~-~~--~~~~~~~ir~~~---~~pvi~~Gg--it~~~a 331 (399)
.... ...+.+++.+|+ ++.|+|++-++-++....|.. .+ ..+.+++|++.+ ++|++.=|+ +..++.
T Consensus 1241 ~~~~~~~~~T~p~~a~~Fv---~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~ 1317 (1378)
T PLN02858 1241 TVEEYEAKLTDVDQAKEFI---DETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLI 1317 (1378)
T ss_pred cccccccCCCCHHHHHHHH---HhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHH
Confidence 0000 022345555555 467999999887775544432 23 456789999999 799766554 578889
Q ss_pred HHHHHcCCCcEEEechHH
Q 015862 332 NKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 332 ~~~L~~G~~D~V~~gR~~ 349 (399)
.++++.|.+- |=++..+
T Consensus 1318 ~~ai~~Gi~K-iNi~T~~ 1334 (1378)
T PLN02858 1318 KECIENGVRK-FNVNTEV 1334 (1378)
T ss_pred HHHHHcCCeE-EEeCHHH
Confidence 9999999543 5555544
No 321
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.16 E-value=0.092 Score=48.46 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechH
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 348 (399)
+.+++..+++.|.+.|+..++++-.+ +...+.++.+++.++.-+++.|-+ |+++++++++.| ++|+.. |
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fivs--P 87 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFIVS--P 87 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEC--C
Confidence 46778999999999999999986432 123456788888887667888888 999999999999 999854 3
Q ss_pred HhhCCcHHHHHHh-CCC
Q 015862 349 FLANPDLPRRFEL-NAP 364 (399)
Q Consensus 349 ~iadPdl~~k~~~-g~~ 364 (399)
. .||++.+..++ |.+
T Consensus 88 ~-~~~~v~~~~~~~~i~ 103 (204)
T TIGR01182 88 G-LTPELAKHAQDHGIP 103 (204)
T ss_pred C-CCHHHHHHHHHcCCc
Confidence 3 38888887665 344
No 322
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=95.12 E-value=2.6 Score=40.44 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEE
Q 015862 176 DEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGI 254 (399)
Q Consensus 176 ~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~v 254 (399)
.||-..+..|++++. ...|+|+|-+|+-.| . ..+...++..++ .|.. .|.+
T Consensus 96 ~DIpnTv~~~a~a~~--~~~g~D~vTvh~~~G--------------------~-----d~l~~~~~~~~~-~~~~v~Vlv 147 (261)
T TIGR02127 96 GDIGSTASAYAKAWL--GHLHADALTVSPYLG--------------------L-----DSLRPFLEYARA-NGAGIFVLV 147 (261)
T ss_pred cChHHHHHHHHHHHH--hhcCCCEEEECCcCC--------------------H-----HHHHHHHHHHhh-cCCEEEEEE
Confidence 356667777777744 368999999996443 1 122223333222 2223 5777
Q ss_pred EecC-Cc-ccCCCCCC---ChHHHHHHHHHhhhhh----CceEEEEeCCCcccccccCCCchhhHHHHhhcCC-cEEEeC
Q 015862 255 RLSP-FA-NYMESGDS---NPEALGLYMAESLNKY----GILYCHMVEPRMKTREEKSECPHSLLPMRKAFKG-TFLVAG 324 (399)
Q Consensus 255 rls~-~~-~~~~~~~~---~~~~~~~~l~~~Le~~----Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~-pvi~~G 324 (399)
+.|- .+ ++.+.+.. ...+...++++.+.+. |.+-+-+-. ...+.++.+|+.++. ++++=|
T Consensus 148 lTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gA----------T~p~e~~~iR~~~~~~~il~PG 217 (261)
T TIGR02127 148 KTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGA----------TSPGDLLRLRIEMPTAPFLVPG 217 (261)
T ss_pred eCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECC----------CCHHHHHHHHHhCCCCeEEeCC
Confidence 8874 22 23222111 1234455556655433 444444311 123567788887643 333333
Q ss_pred ----CCCHHHHHHHHHcCCCc-EEEechHHhhCCcHHHHHH
Q 015862 325 ----GYDREDGNKAIAEGRAD-LVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 325 ----git~~~a~~~L~~G~~D-~V~~gR~~iadPdl~~k~~ 360 (399)
|=++++....+.....| ++.+||+++..++-...++
T Consensus 218 igaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 218 FGAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred cCCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 11577777766544578 8999999988877655443
No 323
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.10 E-value=0.26 Score=46.71 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc--
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN-- 261 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~-- 261 (399)
+..+.+++..++|++||.|-.+. -..+.|+++|++. -+|.-|+.....
T Consensus 90 ~~~~~~~~l~~aGa~gv~iED~~----------------------------~~~~~i~ai~~a~--i~ViaRtd~~pq~~ 139 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIEGGE----------------------------WHIETLQMLTAAA--VPVIAHTGLTPQSV 139 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEcCcH----------------------------HHHHHHHHHHHcC--CeEEEEeCCchhhh
Confidence 34777888889999999988531 1345677777653 356678765211
Q ss_pred -----cCCC-CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHH
Q 015862 262 -----YMES-GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAI 335 (399)
Q Consensus 262 -----~~~~-~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L 335 (399)
+... ......+++++-++.++++|+|.+-+... ..+.+++|.+.+++|++++|.=.--+.+ +|
T Consensus 140 ~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~----------~~e~~~~i~~~~~~P~~~~gag~~~dgq-~l 208 (240)
T cd06556 140 NTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV----------PVELAKQITEALAIPLAGIGAGSGTDGQ-FL 208 (240)
T ss_pred hccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEEecCcCCCce-EE
Confidence 0001 11235677888899999999998886321 3467888999999998877642100111 11
Q ss_pred HcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 336 AEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 336 ~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
- ..|++++...+ -|-++++..+
T Consensus 209 v--~~d~lg~~~~~--~p~f~~~~~~ 230 (240)
T cd06556 209 V--LADAFGITGGH--IPKFAKNFHA 230 (240)
T ss_pred e--HHhhhcccCCC--CCchHHHHhh
Confidence 0 13455554442 5666666544
No 324
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=95.10 E-value=0.18 Score=51.60 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=65.5
Q ss_pred HHHHHHHHHHh-------CCC-ceEEEecCCcccCCC--------CCCChHHHHHHHHHhh-hhhCceEEEEeCCCcccc
Q 015862 237 LEIVEAVSNEI-------GAD-RVGIRLSPFANYMES--------GDSNPEALGLYMAESL-NKYGILYCHMVEPRMKTR 299 (399)
Q Consensus 237 ~eii~avR~~v-------g~~-~v~vrls~~~~~~~~--------~~~~~~~~~~~l~~~L-e~~Gvd~l~v~~~~~~~~ 299 (399)
.+.|+.||+++ |++ .|.+.....+.+... ....+.++++++.+.| +++++.||+ +|.
T Consensus 213 ~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iE--dPl---- 286 (408)
T cd03313 213 EEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIE--DPF---- 286 (408)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEE--eCC----
Confidence 45555555555 766 588887653322111 1123567777766665 568888877 442
Q ss_pred cccCCCchhhHHHHhhc--CCcEEEeCCC--CHHHHHHHHHcCCCcEEEe
Q 015862 300 EEKSECPHSLLPMRKAF--KGTFLVAGGY--DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 300 ~~~~~~~~~~~~ir~~~--~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~ 345 (399)
....++..+.+++.+ ++||++...+ +++++.++++.+.+|.|.+
T Consensus 287 --~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~i 334 (408)
T cd03313 287 --DEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLI 334 (408)
T ss_pred --CCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEE
Confidence 122456677789988 6777665544 6999999999999998865
No 325
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.06 E-value=0.33 Score=46.45 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
.+..++-++.++++|++.+-+.. .+ .+.++.|.+.+++|+++.|.=..-+.+-++- -|++++...
T Consensus 159 a~~~i~~A~a~e~AGA~~ivlE~---------vp-~~~a~~It~~l~iP~iGIGaG~~~dGQvlV~---~D~lG~~~~-- 223 (263)
T TIGR00222 159 AKKLLEDALALEEAGAQLLVLEC---------VP-VELAAKITEALAIPVIGIGAGNVCDGQILVM---HDALGITVG-- 223 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcC---------Cc-HHHHHHHHHhCCCCEEeeccCCCCCceeeeH---HhhcCCCCC--
Confidence 45677788899999999887521 12 3688899999999998876421111111111 355555433
Q ss_pred hCCcHHHHHHhCC
Q 015862 351 ANPDLPRRFELNA 363 (399)
Q Consensus 351 adPdl~~k~~~g~ 363 (399)
..|-|+++..+..
T Consensus 224 ~~pkf~k~y~~~~ 236 (263)
T TIGR00222 224 HIPKFAKNYLAET 236 (263)
T ss_pred CCCCchHHHhhHH
Confidence 2577777666543
No 326
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.03 E-value=0.38 Score=46.77 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHH-hCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIE-AGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 250 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~-aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~ 250 (399)
.+..+.++++++. ..+ +|.+||-+.+.-| +|. -=|.+.|.+++..+++.+... -
T Consensus 20 ~iD~~~~~~li~~-------l~~~~Gv~gi~v~GstG----E~~-----------~Ls~eEr~~~~~~~~~~~~~~---~ 74 (293)
T PRK04147 20 QIDEQGLRRLVRF-------NIEKQGIDGLYVGGSTG----EAF-----------LLSTEEKKQVLEIVAEEAKGK---V 74 (293)
T ss_pred CcCHHHHHHHHHH-------HHhcCCCCEEEECCCcc----ccc-----------cCCHHHHHHHHHHHHHHhCCC---C
Confidence 4556666666554 466 9999999886543 221 125677776666555554321 2
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEe-----CC
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVA-----GG 325 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~-----Gg 325 (399)
+|.+=++ ..+.++++++++..++.|+|.+-+..|.+..+. ......+.+.|-++++.||+.- .+
T Consensus 75 ~viagvg----------~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~-~~~l~~~f~~va~a~~lPv~iYn~P~~tg 143 (293)
T PRK04147 75 KLIAQVG----------SVNTAEAQELAKYATELGYDAISAVTPFYYPFS-FEEICDYYREIIDSADNPMIVYNIPALTG 143 (293)
T ss_pred CEEecCC----------CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCC-HHHHHHHHHHHHHhCCCCEEEEeCchhhc
Confidence 4554332 235678999999999999999998877553321 1122345666777788886543 23
Q ss_pred --CCHHHHHHHHH
Q 015862 326 --YDREDGNKAIA 336 (399)
Q Consensus 326 --it~~~a~~~L~ 336 (399)
++++...++.+
T Consensus 144 ~~l~~~~l~~L~~ 156 (293)
T PRK04147 144 VNLSLDQFNELFT 156 (293)
T ss_pred cCCCHHHHHHHhc
Confidence 37887777764
No 327
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=95.03 E-value=0.5 Score=51.36 Aligned_cols=149 Identities=12% Similarity=0.053 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCccc--
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANY-- 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~-- 262 (399)
.+-|+...++|+++|=|. +..+-||||+ +-++.||+++.- ||..| +=.++..
T Consensus 73 ~~~a~~y~~~GA~aiSVl----------------Te~~~F~Gs~--------~~l~~vr~~v~~-PvLrKDFIid~~QI~ 127 (695)
T PRK13802 73 AALAREYEQGGASAISVL----------------TEGRRFLGSL--------DDFDKVRAAVHI-PVLRKDFIVTDYQIW 127 (695)
T ss_pred HHHHHHHHHcCCcEEEEe----------------cCcCcCCCCH--------HHHHHHHHhCCC-CEEeccccCCHHHHH
Confidence 555666688999999866 5566789995 456677777631 44432 1000000
Q ss_pred C----C--C----CCCChHHHHHHHHHhhhhhCceEE-EEeCCCc-------ccc---------cccCCCchhhHHHHhh
Q 015862 263 M----E--S----GDSNPEALGLYMAESLNKYGILYC-HMVEPRM-------KTR---------EEKSECPHSLLPMRKA 315 (399)
Q Consensus 263 ~----~--~----~~~~~~~~~~~l~~~Le~~Gvd~l-~v~~~~~-------~~~---------~~~~~~~~~~~~ir~~ 315 (399)
. + . -.-.+.++..++.+...+.|++.| +||...- ... ..-.-.......+.+.
T Consensus 128 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ 207 (695)
T PRK13802 128 EARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAAD 207 (695)
T ss_pred HHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhh
Confidence 0 0 0 001112344556666667787754 6653210 000 0000112344556666
Q ss_pred cC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 316 FK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 316 ~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
++ ..+|+-+|+ |++++..+.+.| +|.|.+|..++..||....++
T Consensus 208 ip~~~~~VsESGI~~~~d~~~l~~~G-~davLIGeslm~~~dp~~~~~ 254 (695)
T PRK13802 208 LPDDVIKVAESGVFGAVEVEDYARAG-ADAVLVGEGVATADDHELAVE 254 (695)
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHCC-CCEEEECHHhhCCCCHHHHHH
Confidence 64 346677888 999999999988 999999999999999766554
No 328
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.96 E-value=0.16 Score=49.23 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=68.8
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE
Q 015862 218 VNDRTDQYGGS--LENRCRFA---LEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM 291 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~---~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v 291 (399)
.|||.+-+-+- .+|-.++. .+.++++|+..+.. .|.|... +.+++.+ ..++|+|.|-+
T Consensus 160 ~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~------------tleea~~----a~~agaDiImL 223 (290)
T PRK06559 160 YNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVE------------SLAAAEE----AAAAGADIIML 223 (290)
T ss_pred cccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECC------------CHHHHHH----HHHcCCCEEEE
Confidence 67888766653 56776665 46666666666532 4555442 3444333 33679998876
Q ss_pred eCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 292 VEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
..-+.. ...+.+..+++ ++.+-++||+|++.+.++.+.| +|+|++|....
T Consensus 224 Dnmspe------~l~~av~~~~~--~~~leaSGGI~~~ni~~yA~tG-VD~Is~galth 273 (290)
T PRK06559 224 DNMSLE------QIEQAITLIAG--RSRIECSGNIDMTTISRFRGLA-IDYVSSGSLTH 273 (290)
T ss_pred CCCCHH------HHHHHHHHhcC--ceEEEEECCCCHHHHHHHHhcC-CCEEEeCcccc
Confidence 422100 01112222332 3568899999999999999998 99999998776
No 329
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.93 E-value=0.3 Score=47.74 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=62.9
Q ss_pred HHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcE
Q 015862 241 EAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTF 320 (399)
Q Consensus 241 ~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pv 320 (399)
+.+|+... .++++.+... . ..+...++++.+++.|++.|.++..... . .....++.++++++.+++||
T Consensus 108 ~~i~~~~~-~~~~~ql~~~--------~-~~~~~~~~i~~~~~~g~~~i~l~~~~p~-~-~~~~~~~~i~~l~~~~~~pv 175 (299)
T cd02809 108 EEVAAAAP-GPRWFQLYVP--------R-DREITEDLLRRAEAAGYKALVLTVDTPV-L-GRRLTWDDLAWLRSQWKGPL 175 (299)
T ss_pred HHHHHhcC-CCeEEEEeec--------C-CHHHHHHHHHHHHHcCCCEEEEecCCCC-C-CCCCCHHHHHHHHHhcCCCE
Confidence 34444432 4677776431 1 2344566778888889998877643211 1 11134578899999999999
Q ss_pred EEeCCCCHHHHHHHHHcCCCcEEEe
Q 015862 321 LVAGGYDREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 321 i~~Ggit~~~a~~~L~~G~~D~V~~ 345 (399)
++-+-.++++|..+++.| +|+|.+
T Consensus 176 ivK~v~s~~~a~~a~~~G-~d~I~v 199 (299)
T cd02809 176 ILKGILTPEDALRAVDAG-ADGIVV 199 (299)
T ss_pred EEeecCCHHHHHHHHHCC-CCEEEE
Confidence 888767999999999998 999876
No 330
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=94.92 E-value=1.5 Score=43.44 Aligned_cols=173 Identities=13% Similarity=0.127 Sum_probs=101.7
Q ss_pred HhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCC---CCCChhHHHHHH
Q 015862 106 VEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPP---RRLRTDEIPQIV 182 (399)
Q Consensus 106 i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p---~~mt~~eI~~ii 182 (399)
++...+++.++++.|-++.+-+.-+-.++.|.. ...| ..+|.+++.+-|
T Consensus 57 ~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~----------------------------Q~~P~aW~~~~~~~l~~~v 108 (332)
T PF07745_consen 57 LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGK----------------------------QNKPAAWANLSFDQLAKAV 108 (332)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-----------------------------B--TTCTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCC----------------------------CCCCccCCCCCHHHHHHHH
Confidence 456788899999999999999865444443321 1112 236889999999
Q ss_pred HHHHHHHHHHH-HhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 183 NDFRLAARNAI-EAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~-~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
.+|......+. ++|.+-=-|..|+. +-.-||.|..+ ....++=.+|+..-+++||+..+.-.|.|-+..
T Consensus 109 ~~yT~~vl~~l~~~G~~pd~VQVGNE-in~Gmlwp~g~------~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~--- 178 (332)
T PF07745_consen 109 YDYTKDVLQALKAAGVTPDMVQVGNE-INNGMLWPDGK------PSNWDNLAKLLNAGIKAVREVDPNIKVMLHLAN--- 178 (332)
T ss_dssp HHHHHHHHHHHHHTT--ESEEEESSS-GGGESTBTTTC------TT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES----
T ss_pred HHHHHHHHHHHHHCCCCccEEEeCcc-ccccccCcCCC------ccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECC---
Confidence 99999887764 47765433334442 33447777544 556778888999999999995543357777653
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceE--EEEeCCCcccccccCCCchhhHHHHhhcCCcEEEe
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILY--CHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVA 323 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~--l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~ 323 (399)
....+....+...|.+.|+|| |-+|--.++.. .-......+..+++.++.||+++
T Consensus 179 ------~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-~l~~l~~~l~~l~~ry~K~V~V~ 235 (332)
T PF07745_consen 179 ------GGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-TLEDLKNNLNDLASRYGKPVMVV 235 (332)
T ss_dssp ------TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST--HHHHHHHHHHHHHHHT-EEEEE
T ss_pred ------CCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-hHHHHHHHHHHHHHHhCCeeEEE
Confidence 223455677888998888554 55431111100 00001123455667778886655
No 331
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=94.92 E-value=0.42 Score=47.32 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHH-hCCCceEEE-e--cCCcc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNE-IGADRVGIR-L--SPFAN 261 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~-vg~~~v~vr-l--s~~~~ 261 (399)
++-|+...++|+++|=|- +-.+-|+||++ -++.||++ +. -||..| + .++.-
T Consensus 142 ~~iA~~Ye~~GA~aISVL----------------Td~~~F~Gs~e--------~L~~vr~~~v~-lPvLrKDFIID~yQI 196 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVL----------------TDEKYFQGSFE--------NLEAIRNAGVK-CPLLCKEFIVDAWQI 196 (338)
T ss_pred HHHHHHHHhCCCcEEEEe----------------cCcCcCCCCHH--------HHHHHHHcCCC-CCEeeccccCCHHHH
Confidence 556666788999999866 45566899954 56788887 63 255543 1 11000
Q ss_pred cC--CCC--------CCChHHHHHHHHHhhhhhCceE-EEEeCCC-----cc--ccc----ccC------CCchhhHHHH
Q 015862 262 YM--ESG--------DSNPEALGLYMAESLNKYGILY-CHMVEPR-----MK--TRE----EKS------ECPHSLLPMR 313 (399)
Q Consensus 262 ~~--~~~--------~~~~~~~~~~l~~~Le~~Gvd~-l~v~~~~-----~~--~~~----~~~------~~~~~~~~ir 313 (399)
+. ..| .-.+.++..++.+...+.|++. ++||... .. ... ... -.......+.
T Consensus 197 ~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~ 276 (338)
T PLN02460 197 YYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLL 276 (338)
T ss_pred HHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHh
Confidence 00 000 0011233455555556678775 4665321 00 000 000 0122233344
Q ss_pred h-----hc---CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 314 K-----AF---KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 314 ~-----~~---~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
+ .+ ++.+++-+|| |++++..+.+.| +|.|-+|-.++..||.-..+++
T Consensus 277 ~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G-adAvLVGEsLMr~~dp~~~l~~ 332 (338)
T PLN02460 277 EGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG-VKAVLVGESLVKQDDPGKGIAG 332 (338)
T ss_pred hhccccccCCCCeEEEECCCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHHH
Confidence 4 22 1335666888 999999999998 9999999999999998777664
No 332
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.91 E-value=0.42 Score=46.60 Aligned_cols=128 Identities=9% Similarity=0.058 Sum_probs=81.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR 251 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~ 251 (399)
.+..+.++++++.+ .+.|.|||-+.+.-| +|. -=|.+.|.+++..+++.+... -+
T Consensus 22 ~iD~~~l~~li~~l-------~~~Gv~gi~v~GstG----E~~-----------~Lt~eEr~~v~~~~~~~~~g~---~p 76 (296)
T TIGR03249 22 SFDEAAYRENIEWL-------LGYGLEALFAAGGTG----EFF-----------SLTPAEYEQVVEIAVSTAKGK---VP 76 (296)
T ss_pred CcCHHHHHHHHHHH-------HhcCCCEEEECCCCc----Ccc-----------cCCHHHHHHHHHHHHHHhCCC---Cc
Confidence 46677777776665 579999999886653 221 125677776666665554321 24
Q ss_pred eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEe---C-CCC
Q 015862 252 VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVA---G-GYD 327 (399)
Q Consensus 252 v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~---G-git 327 (399)
|.+=++ . ..++++++++..++.|+|.+-+..|.+..+ ......++.+.|.++++.||+.- | .++
T Consensus 77 vi~gv~----------~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~-s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~ 144 (296)
T TIGR03249 77 VYTGVG----------G-NTSDAIEIARLAEKAGADGYLLLPPYLING-EQEGLYAHVEAVCESTDLGVIVYQRDNAVLN 144 (296)
T ss_pred EEEecC----------c-cHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Confidence 444222 2 367789999999999999998877654332 11123345667777788886533 2 237
Q ss_pred HHHHHHHHH
Q 015862 328 REDGNKAIA 336 (399)
Q Consensus 328 ~~~a~~~L~ 336 (399)
++...++.+
T Consensus 145 ~~~~~~La~ 153 (296)
T TIGR03249 145 ADTLERLAD 153 (296)
T ss_pred HHHHHHHHh
Confidence 888887775
No 333
>PRK00077 eno enolase; Provisional
Probab=94.90 E-value=0.2 Score=51.55 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=64.3
Q ss_pred HHHHHHHHHHh-------CCC-ceEEEecCCcccCCCCC-----CChHHHH-HHHHHhhhhhCceEEEEeCCCccccccc
Q 015862 237 LEIVEAVSNEI-------GAD-RVGIRLSPFANYMESGD-----SNPEALG-LYMAESLNKYGILYCHMVEPRMKTREEK 302 (399)
Q Consensus 237 ~eii~avR~~v-------g~~-~v~vrls~~~~~~~~~~-----~~~~~~~-~~l~~~Le~~Gvd~l~v~~~~~~~~~~~ 302 (399)
.+.++.||+++ |++ .|+|.....+.+.+..+ ..+.++. ..+++.++++++.||+ +|. .
T Consensus 216 ~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iE--dPl------~ 287 (425)
T PRK00077 216 EEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIE--DGL------D 287 (425)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEE--cCC------C
Confidence 45556666664 776 58888754322211111 1133344 4456667778888877 442 1
Q ss_pred CCCchhhHHHHhhc--CCcEEEeCCC--CHHHHHHHHHcCCCcEEEe
Q 015862 303 SECPHSLLPMRKAF--KGTFLVAGGY--DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 303 ~~~~~~~~~ir~~~--~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~ 345 (399)
...++..+.+++.+ ++||++...+ +++++.++++.+.||+|.+
T Consensus 288 ~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~i 334 (425)
T PRK00077 288 ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILI 334 (425)
T ss_pred CccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEe
Confidence 22456677899988 5777666554 4999999999999998865
No 334
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.86 E-value=0.12 Score=48.06 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechH
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 348 (399)
+.+++..+++.|.+.|++.++++-. .+...+.++.+++.++.-+++.|-+ |.++++.+++.| +||+.. |
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~-------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG-A~Fivs--P 94 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLR-------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG-AQFIVS--P 94 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC-CCEEEC--C
Confidence 4678999999999999999998722 1123457788888887667888887 899999999999 998876 3
Q ss_pred HhhCCcHHHHHHh
Q 015862 349 FLANPDLPRRFEL 361 (399)
Q Consensus 349 ~iadPdl~~k~~~ 361 (399)
-.+|++.+..++
T Consensus 95 -~~~~~vi~~a~~ 106 (212)
T PRK05718 95 -GLTPPLLKAAQE 106 (212)
T ss_pred -CCCHHHHHHHHH
Confidence 356688777665
No 335
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.86 E-value=0.56 Score=45.54 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=81.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR 251 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~ 251 (399)
.++.+.++++++.+ .+.|.|||-+.+.-| +|. -=|.|.|.+++..+++++. |.-+
T Consensus 17 ~iD~~~l~~l~~~l-------~~~Gv~gi~v~GstG----E~~-----------~Ls~eEr~~l~~~~~~~~~---~~~p 71 (289)
T cd00951 17 SFDEDAYRAHVEWL-------LSYGAAALFAAGGTG----EFF-----------SLTPDEYAQVVRAAVEETA---GRVP 71 (289)
T ss_pred CcCHHHHHHHHHHH-------HHcCCCEEEECcCCc----Ccc-----------cCCHHHHHHHHHHHHHHhC---CCCC
Confidence 46666666666654 568999999887653 111 1257788877766666653 2225
Q ss_pred eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEe---CC-CC
Q 015862 252 VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVA---GG-YD 327 (399)
Q Consensus 252 v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~---Gg-it 327 (399)
|.+=++ . ...+++++++..++.|+|.+-+..|.+..+ .......+.+.|.+++++||+.- |. ++
T Consensus 72 vi~gv~----------~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~-~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~ 139 (289)
T cd00951 72 VLAGAG----------Y-GTATAIAYAQAAEKAGADGILLLPPYLTEA-PQEGLYAHVEAVCKSTDLGVIVYNRANAVLT 139 (289)
T ss_pred EEEecC----------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence 554222 2 356789999999999999998876654322 11122345666777788886543 22 37
Q ss_pred HHHHHHHHH
Q 015862 328 REDGNKAIA 336 (399)
Q Consensus 328 ~~~a~~~L~ 336 (399)
++...++.+
T Consensus 140 ~~~l~~L~~ 148 (289)
T cd00951 140 ADSLARLAE 148 (289)
T ss_pred HHHHHHHHh
Confidence 887777775
No 336
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.86 E-value=0.83 Score=44.55 Aligned_cols=137 Identities=13% Similarity=0.048 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHh-CCC-ceEEEecCCccc
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEI-GAD-RVGIRLSPFANY 262 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~v-g~~-~v~vrls~~~~~ 262 (399)
..+..++..++|.-||.|--.. ..+|....+|..--......+-|++++++. +++ .|..|.-...
T Consensus 95 v~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-- 161 (292)
T PRK11320 95 IARTVKSMIKAGAAAVHIEDQV-----------GAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA-- 161 (292)
T ss_pred HHHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc--
Confidence 3566677789999999886322 235555554432222334455555666554 444 4667876531
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE---eCCCCH-HHHHHHHHcC
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV---AGGYDR-EDGNKAIAEG 338 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~---~Ggit~-~~a~~~L~~G 338 (399)
....+++++-++...++|+|.|-+... ...+.++.+.+.++.|+++ .++-++ ...+++-+-|
T Consensus 162 -----~~g~deAI~Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lG 227 (292)
T PRK11320 162 -----VEGLDAAIERAQAYVEAGADMIFPEAM---------TELEMYRRFADAVKVPILANITEFGATPLFTTEELASAG 227 (292)
T ss_pred -----ccCHHHHHHHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcC
Confidence 224788999999999999999887532 1345677788888888743 233332 2345555556
Q ss_pred CCcEEEechHH
Q 015862 339 RADLVVYGRLF 349 (399)
Q Consensus 339 ~~D~V~~gR~~ 349 (399)
+.+|.++-.+
T Consensus 228 -v~~v~~~~~~ 237 (292)
T PRK11320 228 -VAMVLYPLSA 237 (292)
T ss_pred -CcEEEEChHH
Confidence 9999999544
No 337
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.82 E-value=0.24 Score=48.50 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=78.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD- 250 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~- 250 (399)
.++.+.+.++++.+ .+.|.|||-+.+.-| +|. -=+.|.|.+++..+++++ +..
T Consensus 24 ~iD~~~l~~li~~l-------~~~Gv~Gi~~~GstG----E~~-----------~Lt~eEr~~~~~~~~~~~----~~~~ 77 (303)
T PRK03620 24 SFDEAAYREHLEWL-------APYGAAALFAAGGTG----EFF-----------SLTPDEYSQVVRAAVETT----AGRV 77 (303)
T ss_pred CcCHHHHHHHHHHH-------HHcCCCEEEECcCCc----Ccc-----------cCCHHHHHHHHHHHHHHh----CCCC
Confidence 46666666666654 557999999887653 111 125677877665555554 333
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEe--CC--C
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVA--GG--Y 326 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~--Gg--i 326 (399)
+|.+=++ . ...+++++++..++.|+|.+-+..|.+..+ .......+.+.|.+++++||+.- .+ +
T Consensus 78 pvi~gv~----------~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~-~~~~i~~~f~~va~~~~lpi~lYn~~g~~l 145 (303)
T PRK03620 78 PVIAGAG----------G-GTAQAIEYAQAAERAGADGILLLPPYLTEA-PQEGLAAHVEAVCKSTDLGVIVYNRDNAVL 145 (303)
T ss_pred cEEEecC----------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 5544222 2 457789999999999999998877654322 11122345666777778886533 22 3
Q ss_pred CHHHHHHHH
Q 015862 327 DREDGNKAI 335 (399)
Q Consensus 327 t~~~a~~~L 335 (399)
+++...++.
T Consensus 146 ~~~~l~~L~ 154 (303)
T PRK03620 146 TADTLARLA 154 (303)
T ss_pred CHHHHHHHH
Confidence 677777666
No 338
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.77 E-value=0.097 Score=51.60 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=50.1
Q ss_pred HHHHHHhhhhh--CceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 274 GLYMAESLNKY--GILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 274 ~~~l~~~Le~~--Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
..+.++.|.++ ++|+|.+....-. .....+.+++||+.++.+.+..|++ |+++|+.+++.| +|.|-+|
T Consensus 108 d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG-AD~ikVg 178 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG-ADIVKVG 178 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC-CCEEEEc
Confidence 34566667666 4999887532110 0123567889999999888888888 999999999999 9988666
No 339
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.76 E-value=0.3 Score=46.92 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
.++.++-++.++++|++.+-+... ..+.++.|.+.+++|+|+.|.=..-+.+-++- -|++++...
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v----------~~~~~~~i~~~l~iP~igiGaG~~~dgqvlv~---~D~lG~~~~-- 224 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECV----------PAELAKEITEALSIPTIGIGAGPDCDGQVLVW---HDMLGLFSG-- 224 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEeccCCCCCceeeeH---HhhcCCCCC--
Confidence 566788899999999998876321 12588889999999999876421111211111 355555322
Q ss_pred hCCcHHHHHHhCC
Q 015862 351 ANPDLPRRFELNA 363 (399)
Q Consensus 351 adPdl~~k~~~g~ 363 (399)
.-|-|+++..+..
T Consensus 225 ~~pkf~k~~~~~~ 237 (264)
T PRK00311 225 FKPKFVKRYADLA 237 (264)
T ss_pred CCCCchHhHhhhH
Confidence 2567777666554
No 340
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.74 E-value=0.14 Score=47.21 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechH
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 348 (399)
+.+++..+++.|.+.|+..++++-.+ +...+.++.+++.++.-+++.|-+ |+++++++++.| ++|+.. |
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~FivS--P 83 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SRFIVS--P 83 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CCEEEC--C
Confidence 46778999999999999999986431 123456777888787668888888 999999999999 998876 3
Q ss_pred HhhCCcHHHHHHh
Q 015862 349 FLANPDLPRRFEL 361 (399)
Q Consensus 349 ~iadPdl~~k~~~ 361 (399)
..||++.+..++
T Consensus 84 -~~~~~vi~~a~~ 95 (201)
T PRK06015 84 -GTTQELLAAAND 95 (201)
T ss_pred -CCCHHHHHHHHH
Confidence 367888777664
No 341
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.74 E-value=0.58 Score=45.64 Aligned_cols=129 Identities=9% Similarity=0.093 Sum_probs=83.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR 251 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~ 251 (399)
.++.+.+.++++.+ .+.|.|||-+.+.-| +|. -=|.+.|.+++..++++++. .-+
T Consensus 17 ~iD~~~l~~lv~~~-------~~~Gv~gi~v~GstG----E~~-----------~Ls~~Er~~l~~~~~~~~~g---~~p 71 (294)
T TIGR02313 17 DIDEEALRELIEFQ-------IEGGSHAISVGGTSG----EPG-----------SLTLEERKQAIENAIDQIAG---RIP 71 (294)
T ss_pred CcCHHHHHHHHHHH-------HHcCCCEEEECccCc----ccc-----------cCCHHHHHHHHHHHHHHhCC---CCc
Confidence 46666666666655 568999999887653 111 13678888777766665543 225
Q ss_pred eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEe------C
Q 015862 252 VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVA------G 324 (399)
Q Consensus 252 v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~------G 324 (399)
|.+=++ ..+.++++++++..++.|+|.+-+..|.+..+. ......+.+.|-+++ +.||+.- |
T Consensus 72 vi~gv~----------~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~-~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg 140 (294)
T TIGR02313 72 FAPGTG----------ALNHDETLELTKFAEEAGADAAMVIVPYYNKPN-QEALYDHFAEVADAVPDFPIIIYNIPGRAA 140 (294)
T ss_pred EEEECC----------cchHHHHHHHHHHHHHcCCCEEEEcCccCCCCC-HHHHHHHHHHHHHhccCCCEEEEeCchhcC
Confidence 554333 235677899999999999999998877543321 122334566777788 7886532 3
Q ss_pred C-CCHHHHHHHHH
Q 015862 325 G-YDREDGNKAIA 336 (399)
Q Consensus 325 g-it~~~a~~~L~ 336 (399)
. ++++...++.+
T Consensus 141 ~~l~~~~l~~L~~ 153 (294)
T TIGR02313 141 QEIAPKTMARLRK 153 (294)
T ss_pred cCCCHHHHHHHHh
Confidence 2 37888787775
No 342
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.71 E-value=0.19 Score=50.39 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=87.0
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~ 269 (399)
.+..++|.|.|-|....||= -+-+|.|+.||+..+.-.|. .. +
T Consensus 257 ~ll~~aGvdvviLDSSqGnS------------------------~~qiemik~iK~~yP~l~Vi---aG----------N 299 (503)
T KOG2550|consen 257 DLLVQAGVDVVILDSSQGNS------------------------IYQLEMIKYIKETYPDLQII---AG----------N 299 (503)
T ss_pred HHhhhcCCcEEEEecCCCcc------------------------hhHHHHHHHHHhhCCCceee---cc----------c
Confidence 45678999999999888642 35589999999998653221 11 1
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcc----c--ccccCCCc---hhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCC
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMK----T--REEKSECP---HSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGR 339 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~----~--~~~~~~~~---~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~ 339 (399)
-. +.+.++.|-++|+|-+.|.-+.-+ + ..-..+.. .-..++...+++|||+-||+ ++....++|.-|
T Consensus 300 VV--T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lG- 376 (503)
T KOG2550|consen 300 VV--TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLG- 376 (503)
T ss_pred ee--eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcC-
Confidence 11 344566777899999987543211 1 01112222 23344556689999999999 899999999999
Q ss_pred CcEEEechHHhhCCcHH
Q 015862 340 ADLVVYGRLFLANPDLP 356 (399)
Q Consensus 340 ~D~V~~gR~~iadPdl~ 356 (399)
++.||||--|.+.-+-|
T Consensus 377 AstVMmG~lLAgtTEap 393 (503)
T KOG2550|consen 377 ASTVMMGGLLAGTTEAP 393 (503)
T ss_pred chhheecceeeeeeccC
Confidence 99999998776665554
No 343
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.70 E-value=0.8 Score=44.49 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCC-CchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYG-GSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yG-GslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
+-.|+.+.++||++|-+.+.. ++--+ =-.|. | -+++ -.++.++.|.+++. -||.+.+-.
T Consensus 23 a~SAri~e~aGf~Ai~~sg~~---~a~~l-----G~pD~-g~lt~~----e~~~~~~~I~~~~~-iPviaD~d~------ 82 (285)
T TIGR02317 23 AMAALLAERAGFEAIYLSGAA---VAASL-----GLPDL-GITTLD----EVAEDARRITRVTD-LPLLVDADT------ 82 (285)
T ss_pred HHHHHHHHHcCCCEEEEcHHH---HHHhC-----CCCCC-CCCCHH----HHHHHHHHHHhccC-CCEEEECCC------
Confidence 678899999999999976433 22101 11231 1 1222 22444555555553 278876532
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc----cc--cCCCchhhHHHHhh---cC-CcEEEeCCC--------
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR----EE--KSECPHSLLPMRKA---FK-GTFLVAGGY-------- 326 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~----~~--~~~~~~~~~~ir~~---~~-~pvi~~Ggi-------- 326 (399)
|.++ .....+.++.++++|+.-||+-....... .. -.+..+++.+|+.+ .. .+++.+.+.
T Consensus 83 -GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~ 160 (285)
T TIGR02317 83 -GFGE-AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGL 160 (285)
T ss_pred -CCCC-HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCH
Confidence 2234 45567889999999999999965432110 00 01222345554443 22 345555443
Q ss_pred --CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCC
Q 015862 327 --DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAP 364 (399)
Q Consensus 327 --t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~ 364 (399)
..+.++.+.+.| +|+|.+ +.+.+++..+++.+..+
T Consensus 161 deAI~Ra~ay~~AG-AD~vfi--~g~~~~e~i~~~~~~i~ 197 (285)
T TIGR02317 161 DAAIERAKAYVEAG-ADMIFP--EALTSLEEFRQFAKAVK 197 (285)
T ss_pred HHHHHHHHHHHHcC-CCEEEe--CCCCCHHHHHHHHHhcC
Confidence 134456677777 999998 45678888888887643
No 344
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.69 E-value=0.27 Score=48.25 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD- 250 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~- 250 (399)
.+..+.+.++++.+ .+.|.+||-|.+.-| +|. -=+.|.|.+++..+++. ++.+
T Consensus 25 ~iD~~~l~~lv~~l-------i~~Gv~Gi~v~GstG----E~~-----------~Lt~eEr~~v~~~~~~~----~~grv 78 (309)
T cd00952 25 TVDLDETARLVERL-------IAAGVDGILTMGTFG----ECA-----------TLTWEEKQAFVATVVET----VAGRV 78 (309)
T ss_pred CcCHHHHHHHHHHH-------HHcCCCEEEECcccc----cch-----------hCCHHHHHHHHHHHHHH----hCCCC
Confidence 46666666666655 669999999887664 111 12567787666555554 4333
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEe------
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVA------ 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~------ 323 (399)
+|.+=++. ...++++++++..++.|+|.+-+..|.+..+. .....++.+.|.+++ ++||+.-
T Consensus 79 pvi~Gv~~----------~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~-~~~l~~yf~~va~a~~~lPv~iYn~P~~t 147 (309)
T cd00952 79 PVFVGATT----------LNTRDTIARTRALLDLGADGTMLGRPMWLPLD-VDTAVQFYRDVAEAVPEMAIAIYANPEAF 147 (309)
T ss_pred CEEEEecc----------CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCC-HHHHHHHHHHHHHhCCCCcEEEEcCchhc
Confidence 55554432 34678999999999999999998877543221 112334566677777 5786532
Q ss_pred C-CCCHHHHHHHH
Q 015862 324 G-GYDREDGNKAI 335 (399)
Q Consensus 324 G-git~~~a~~~L 335 (399)
| .++++...++.
T Consensus 148 g~~l~~~~l~~L~ 160 (309)
T cd00952 148 KFDFPRAAWAELA 160 (309)
T ss_pred CCCCCHHHHHHHh
Confidence 2 23677666665
No 345
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.65 E-value=0.29 Score=47.38 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccC
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYM 263 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~ 263 (399)
+.+-+....++|.||+-+.+..| +|.+ =|.+.|.+++.. +++.++.. +|.+-++.
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstG----E~~~-----------Lt~~Er~~l~~~----~~~~~~~~~~vi~gv~~----- 79 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTG----EFYS-----------LTDEERKELLEI----VVEAAAGRVPVIAGVGA----- 79 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTT----TGGG-----------S-HHHHHHHHHH----HHHHHTTSSEEEEEEES-----
T ss_pred HHHHHHHHHHcCCCEEEECCCCc----cccc-----------CCHHHHHHHHHH----HHHHccCceEEEecCcc-----
Confidence 34444455688999999887653 2221 245667655544 44445444 66665554
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE-eC----CC--CHHHHHHHHH
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV-AG----GY--DREDGNKAIA 336 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~-~G----gi--t~~~a~~~L~ 336 (399)
.+.++++++++..++.|+|.+-+..|.+.... .....++.+.|.++++.|++. +- +. +++...++.+
T Consensus 80 -----~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s-~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 80 -----NSTEEAIELARHAQDAGADAVLVIPPYYFKPS-QEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp -----SSHHHHHHHHHHHHHTT-SEEEEEESTSSSCC-HHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred -----hhHHHHHHHHHHHhhcCceEEEEeccccccch-hhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 25678999999999999999988777543221 111234566677778888553 21 22 6777666665
No 346
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.62 E-value=0.47 Score=47.03 Aligned_cols=124 Identities=15% Similarity=0.248 Sum_probs=76.4
Q ss_pred HHHHhCCCEEEEccccchhhhhcccCcccCC----CCCCCC-c---hhhhhHHHHHHHHHHHHHhCCCceEEEe--cCCc
Q 015862 191 NAIEAGFDGVELHGAHGYLIDQFLKDQVNDR----TDQYGG-S---LENRCRFALEIVEAVSNEIGADRVGIRL--SPFA 260 (399)
Q Consensus 191 ~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R----~D~yGG-s---lenR~r~~~eii~avR~~vg~~~v~vrl--s~~~ 260 (399)
.|+++|+|+|...- |-...+.++..+.+ .+.|.| + +-.+..|..|-++.+.+.+-. .++-+ ++++
T Consensus 24 ~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~--~Gi~~~stpfd 98 (329)
T TIGR03569 24 AAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCES--KGIEFLSTPFD 98 (329)
T ss_pred HHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHH--hCCcEEEEeCC
Confidence 44679999999885 77888887765431 223433 3 345566777888888887732 22222 3321
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHH---HHHHHH
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DRED---GNKAIA 336 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~---a~~~L~ 336 (399)
. .-++.|++.|++++-|..+.. .+.++++.+.+ .+.||+..-|. |.++ |.+.+.
T Consensus 99 ----------~----~svd~l~~~~v~~~KIaS~~~-------~n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~ 156 (329)
T TIGR03569 99 ----------L----ESADFLEDLGVPRFKIPSGEI-------TNAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLR 156 (329)
T ss_pred ----------H----HHHHHHHhcCCCEEEECcccc-------cCHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHH
Confidence 1 224456778999998865432 24566776665 58898888777 7655 445555
Q ss_pred cCCCc
Q 015862 337 EGRAD 341 (399)
Q Consensus 337 ~G~~D 341 (399)
+.+++
T Consensus 157 ~~G~~ 161 (329)
T TIGR03569 157 DAGTP 161 (329)
T ss_pred HcCCC
Confidence 44353
No 347
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.62 E-value=0.13 Score=51.18 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=46.6
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
..+.++.|.++|+|+|.+....-.. ....+.++.||+.++ +|||+ |++ |++.++.+++.| +|.|-+|
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s----~~~~~~ik~ik~~~~~~~via-GNV~T~e~a~~L~~aG-ad~vkVG 177 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHS----EHVIDMIKKIKKKFPDVPVIA-GNVVTYEGAKDLIDAG-ADAVKVG 177 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTS----HHHHHHHHHHHHHSTTSEEEE-EEE-SHHHHHHHHHTT--SEEEES
T ss_pred HHHHHHHHHHcCCCEEEccccCccH----HHHHHHHHHHHHhCCCceEEe-cccCCHHHHHHHHHcC-CCEEEEe
Confidence 4567788888999999875332111 112457888999997 67764 555 999999999999 9987665
No 348
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=94.61 E-value=0.5 Score=47.60 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc-eEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~-v~vrls~~~~ 261 (399)
+.|++.+....++|.|+|...... -+|.++ +++.|.+.+.+.++++.+++|... +..=++.
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~---ge~~~~------------~~eER~~~v~~av~~a~~~TG~~~~y~~nit~--- 207 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELL---ADQPYA------------PFEERVRACMEAVRRANEETGRKTLYAPNITG--- 207 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccc---cCcccC------------CHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC---
Confidence 345666666688999999865443 233332 578999999999999999998753 3332222
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPR 295 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~ 295 (399)
..+++++.++..++.|+|.+-+..+.
T Consensus 208 --------~~~e~i~~a~~a~~~Gad~vmv~~~~ 233 (367)
T cd08205 208 --------DPDELRRRADRAVEAGANALLINPNL 233 (367)
T ss_pred --------CHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 24778999999999999998876554
No 349
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.60 E-value=0.9 Score=44.27 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=89.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++||++|-+.+.. ++- .+.=-.|. | +.. ..-.++.++.|.+++. -||.+.+-.
T Consensus 27 a~SAri~e~~Gf~ai~~Sg~~---~a~----~~lG~PD~--g-~l~-~~e~~~~~~~I~~~~~-iPviaD~d~------- 87 (292)
T PRK11320 27 AYHALLAERAGFKAIYLSGGG---VAA----ASLGLPDL--G-ITT-LDDVLIDVRRITDACD-LPLLVDIDT------- 87 (292)
T ss_pred HHHHHHHHHcCCCEEEeCHHH---HHh----HhcCCCCC--C-CCC-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 667899999999999976432 210 01112231 2 111 1123555555555553 278876532
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccc---c---CCCchhhHHHHhhc----CCcEEEeCCC---------
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREE---K---SECPHSLLPMRKAF----KGTFLVAGGY--------- 326 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~---~---~~~~~~~~~ir~~~----~~pvi~~Ggi--------- 326 (399)
|.+ ......+.++.++++|+.-||+-.......-. . .+..+++.+|+.+. +.+++.+.+.
T Consensus 88 GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 166 (292)
T PRK11320 88 GFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLD 166 (292)
T ss_pred CCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHH
Confidence 223 34567889999999999999996543211100 0 12224555555443 2345554442
Q ss_pred -CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCC
Q 015862 327 -DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNA 363 (399)
Q Consensus 327 -t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~ 363 (399)
..+.++.+.+.| +|+|.+- .+.+++..+++.+-.
T Consensus 167 eAI~Ra~aY~eAG-AD~ifi~--~~~~~~~i~~~~~~~ 201 (292)
T PRK11320 167 AAIERAQAYVEAG-ADMIFPE--AMTELEMYRRFADAV 201 (292)
T ss_pred HHHHHHHHHHHcC-CCEEEec--CCCCHHHHHHHHHhc
Confidence 134466777888 9999994 477888888887743
No 350
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.57 E-value=0.095 Score=48.05 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHH
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
.+++..+++.|.+.|+..++++-.+ +...+.++.+++.++.-+++.|-+ |.++++++++.| ++|+.- |
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG-A~FivS--P- 87 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG-AQFIVS--P- 87 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEE--S-
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC-CCEEEC--C-
Confidence 4568899999999999999997542 123467788888888778899998 999999999999 998876 3
Q ss_pred hhCCcHHHHHHhC
Q 015862 350 LANPDLPRRFELN 362 (399)
Q Consensus 350 iadPdl~~k~~~g 362 (399)
-.||++.+..++-
T Consensus 88 ~~~~~v~~~~~~~ 100 (196)
T PF01081_consen 88 GFDPEVIEYAREY 100 (196)
T ss_dssp S--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 3678888776643
No 351
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.55 E-value=0.65 Score=44.85 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=52.1
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccccccc------CCCchhhHHHHhhcCCcEEEe-
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEK------SECPHSLLPMRKAFKGTFLVA- 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~------~~~~~~~~~ir~~~~~pvi~~- 323 (399)
+|.+-|.. .+.++..+.++.+++.|+|+|++.-+.-...... ....+.++.+|+.++.||++=
T Consensus 100 pvi~si~g----------~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl 169 (289)
T cd02810 100 PLIASVGG----------SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKL 169 (289)
T ss_pred eEEEEecc----------CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEe
Confidence 66665543 1356788899999999999998864321110000 011245777888888887643
Q ss_pred -CCCCH----HHHHHHHHcCCCcEEEec
Q 015862 324 -GGYDR----EDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 324 -Ggit~----~~a~~~L~~G~~D~V~~g 346 (399)
..++. +.++.+.+.| +|+|.+.
T Consensus 170 ~~~~~~~~~~~~a~~l~~~G-ad~i~~~ 196 (289)
T cd02810 170 SPYFDLEDIVELAKAAERAG-ADGLTAI 196 (289)
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCEEEEE
Confidence 34463 3344455566 9999874
No 352
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.54 E-value=0.65 Score=45.28 Aligned_cols=139 Identities=16% Similarity=0.082 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcc-cC--CCCCCCCchhhhh--------HHHHHHHHHHHHHhCCCceEEE
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQV-ND--RTDQYGGSLENRC--------RFALEIVEAVSNEIGADRVGIR 255 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~-N~--R~D~yGGslenR~--------r~~~eii~avR~~vg~~~v~vr 255 (399)
+.++.+.++||.+|.+..-. ..|.. |. |--+....+.|++ +++.++.+..++ . +.+|.+-
T Consensus 27 ~~~~~~~~~g~g~v~~kti~-------~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~-~-~~p~i~s 97 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTT-------LEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEE-F-DTPIIAN 97 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCC-------CCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhc-c-CCcEEEE
Confidence 44455567999999987643 11222 22 1112223444443 344444433322 2 1267776
Q ss_pred ecCCcccCCCCCCChHHHHHHHHHhhhhhC-ceEEEEeCCCccccc-----c--cCCCchhhHHHHhhcCCcEEEeCC--
Q 015862 256 LSPFANYMESGDSNPEALGLYMAESLNKYG-ILYCHMVEPRMKTRE-----E--KSECPHSLLPMRKAFKGTFLVAGG-- 325 (399)
Q Consensus 256 ls~~~~~~~~~~~~~~~~~~~l~~~Le~~G-vd~l~v~~~~~~~~~-----~--~~~~~~~~~~ir~~~~~pvi~~Gg-- 325 (399)
+.. .+.+++.+.++.++++| +|+|++....-.... . .....+.++.+|++++.||++=-+
T Consensus 98 i~g----------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~ 167 (301)
T PRK07259 98 VAG----------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN 167 (301)
T ss_pred ecc----------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 653 24677899999999999 999987432100000 0 011234677888888899876433
Q ss_pred C-CHHH-HHHHHHcCCCcEEEe
Q 015862 326 Y-DRED-GNKAIAEGRADLVVY 345 (399)
Q Consensus 326 i-t~~~-a~~~L~~G~~D~V~~ 345 (399)
+ +... ++.+.+.| +|+|.+
T Consensus 168 ~~~~~~~a~~l~~~G-~d~i~~ 188 (301)
T PRK07259 168 VTDIVEIAKAAEEAG-ADGLSL 188 (301)
T ss_pred chhHHHHHHHHHHcC-CCEEEE
Confidence 3 2333 44444455 998765
No 353
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.53 E-value=0.42 Score=47.09 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechH-H
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRL-F 349 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~-~ 349 (399)
.+..++-++.|+++|++.|-+- . . -...++.|.+.+++|+|+.|.=..-+.+-++ .-|++++... .
T Consensus 181 a~~li~dA~ale~AGAf~ivLE-~--------V-p~~la~~It~~l~IPtIGIGAG~~cDGQVLV---~~D~LG~~~~p~ 247 (332)
T PLN02424 181 AVKVVETALALQEAGCFAVVLE-C--------V-PAPVAAAITSALQIPTIGIGAGPFCSGQVLV---YHDLLGMMQHPH 247 (332)
T ss_pred HHHHHHHHHHHHHcCCcEEEEc-C--------C-cHHHHHHHHHhCCCCEEeecCCCCCCceeEe---HHhhcCCCCCcc
Confidence 3456777889999999887752 1 1 1237889999999999987642111111111 1355666421 0
Q ss_pred --hhCCcHHHHHHhCC
Q 015862 350 --LANPDLPRRFELNA 363 (399)
Q Consensus 350 --iadPdl~~k~~~g~ 363 (399)
=.-|-|+++..+..
T Consensus 248 h~~~~PkFvk~y~~~~ 263 (332)
T PLN02424 248 HAKVTPKFCKQYAKVG 263 (332)
T ss_pred ccCCCCchHHHHHhHH
Confidence 01466677666543
No 354
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.50 E-value=0.32 Score=47.08 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=68.8
Q ss_pred ccCCCCCCCCc--hhhhhHH-------HHHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCce
Q 015862 218 VNDRTDQYGGS--LENRCRF-------ALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGIL 287 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~-------~~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd 287 (399)
.|||-+-|-+- .+|-.++ +.+.++++|+..+.. .|.|-+. +.+++.+. .++|+|
T Consensus 152 ~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~------------slee~~ea----~~~gaD 215 (281)
T PRK06543 152 HNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVD------------RLDQIEPV----LAAGVD 215 (281)
T ss_pred cCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeC------------CHHHHHHH----HhcCCC
Confidence 56777665553 4566665 356777777777643 4555443 23443333 367999
Q ss_pred EEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 288 YCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 288 ~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
.|-+..-+.. .....+..+++ ...+.++||+|++.+.++.+.| +|+|++|.....=|
T Consensus 216 iImLDn~s~e------~l~~av~~~~~--~~~leaSGgI~~~ni~~yA~tG-VD~Is~galths~~ 272 (281)
T PRK06543 216 TIMLDNFSLD------DLREGVELVDG--RAIVEASGNVNLNTVGAIASTG-VDVISVGALTHSVR 272 (281)
T ss_pred EEEECCCCHH------HHHHHHHHhCC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence 8876422110 01112222332 2358899999999999999998 99999998665544
No 355
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.47 E-value=1.9 Score=42.64 Aligned_cols=147 Identities=14% Similarity=0.005 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccC-----CCCCCCCchhhhh-------HHHHHHHHHHHHHhCCCceE
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVND-----RTDQYGGSLENRC-------RFALEIVEAVSNEIGADRVG 253 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~-----R~D~yGGslenR~-------r~~~eii~avR~~vg~~~v~ 253 (399)
.+..+.+.++||-+|++..-.-.=+.|--.|.... |..+. ..+.|++ .-.++-+...++..+ .+|.
T Consensus 26 ~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~-~~~in~~g~~n~g~~~~~~~i~~~~~~~~-~pvi 103 (325)
T cd04739 26 LDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEA-LSYFPEYGRYNLGPEEYLELIRRAKRAVS-IPVI 103 (325)
T ss_pred HHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCc-ccccccccccCcCHHHHHHHHHHHHhccC-CeEE
Confidence 55556678899999998864311001111111100 11111 2223332 222333334444332 3777
Q ss_pred EEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc-cccccC-----CCchhhHHHHhhcCCcEEEe--CC
Q 015862 254 IRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMK-TREEKS-----ECPHSLLPMRKAFKGTFLVA--GG 325 (399)
Q Consensus 254 vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~-~~~~~~-----~~~~~~~~ir~~~~~pvi~~--Gg 325 (399)
+-++. .+.++..++++.++++|+|+|++.-.... .+.... ...+.++.+++.+++||++= ..
T Consensus 104 ~si~g----------~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~ 173 (325)
T cd04739 104 ASLNG----------VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF 173 (325)
T ss_pred EEeCC----------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC
Confidence 76653 23467788999999999999987654211 111000 01346778888889998754 33
Q ss_pred C-CHHH-HHHHHHcCCCcEEEe
Q 015862 326 Y-DRED-GNKAIAEGRADLVVY 345 (399)
Q Consensus 326 i-t~~~-a~~~L~~G~~D~V~~ 345 (399)
+ +..+ ++.+.+.| +|.|.+
T Consensus 174 ~~~~~~~a~~l~~~G-adgi~~ 194 (325)
T cd04739 174 FSALAHMAKQLDAAG-ADGLVL 194 (325)
T ss_pred ccCHHHHHHHHHHcC-CCeEEE
Confidence 4 3444 45555555 887766
No 356
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.47 E-value=4.6 Score=38.43 Aligned_cols=204 Identities=11% Similarity=0.031 Sum_probs=117.9
Q ss_pred CCccccCCeeeCCce-eeCCCCCCCCCCCCCCHHHHHHHHhhcC--CCcEEEEcccccCCCCCCCC-CCCCCCCHHHHhh
Q 015862 33 LTPYKMGNFNLSHRV-VLAPLTRQRSYNNVPQPHAILYYSQRTT--KGGFLIAEATGVSNTAQGNP-NTPSIWTKEQVEA 108 (399)
Q Consensus 33 f~P~~ig~~~lkNRi-v~apm~~~~~~~G~~t~~~~~~y~~~a~--g~Glii~e~~~V~~~g~~~~-~~~~l~~d~~i~~ 108 (399)
.+.+++++....+.. +..|-+-- +++.+.--.+..+ |.-++.-+..- |....+. ..++ .++
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE-------s~e~~~~~a~~~~~~g~~~~r~g~~k--pRts~~sf~G~G------~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE-------SYDHIRLAASSAKKLGYNYFRGGAYK--PRTSAASFQGLG------LQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC-------CHHHHHHHHHHHHHcCCCEEEecccC--CCCCCcccCCCC------HHH
Confidence 456677777776544 44554321 3333333333333 55555555443 3322222 1122 358
Q ss_pred hHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHH
Q 015862 109 WKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLA 188 (399)
Q Consensus 109 ~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~a 188 (399)
++.|.+..++.|-.++-.+++ ...
T Consensus 68 l~~L~~~~~~~Gl~~~Tev~d--------------------------------------------------------~~~ 91 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVSEIMS--------------------------------------------------------ERQ 91 (250)
T ss_pred HHHHHHHHHHcCCCEEEeeCC--------------------------------------------------------HHH
Confidence 999999999998888755532 122
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCC
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDS 268 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~ 268 (399)
+..+.+ ..|.++|-+.. .+. .++++++.+. | .||.++-.. -
T Consensus 92 v~~~~e-~vdilqIgs~~-------------~~n--------------~~LL~~va~t-g-kPVilk~G~---------~ 132 (250)
T PRK13397 92 LEEAYD-YLDVIQVGARN-------------MQN--------------FEFLKTLSHI-D-KPILFKRGL---------M 132 (250)
T ss_pred HHHHHh-cCCEEEECccc-------------ccC--------------HHHHHHHHcc-C-CeEEEeCCC---------C
Confidence 233344 48999987654 111 5666666553 2 388887664 2
Q ss_pred ChHHHHHHHHHhhhhhCceEEEEeC-CCccccc--ccCCCchhhHHHHhhcCCcEEEe----CCC-C--HHHHHHHHHcC
Q 015862 269 NPEALGLYMAESLNKYGILYCHMVE-PRMKTRE--EKSECPHSLLPMRKAFKGTFLVA----GGY-D--REDGNKAIAEG 338 (399)
Q Consensus 269 ~~~~~~~~l~~~Le~~Gvd~l~v~~-~~~~~~~--~~~~~~~~~~~ir~~~~~pvi~~----Ggi-t--~~~a~~~L~~G 338 (399)
.+.++....++.+.+.|..-|-+.+ +....+. ....+...+..+|+.++.||+.. +|. . +..+..++.-|
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~G 212 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVG 212 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhC
Confidence 3577788888889888865444444 4321111 11223445677888889998774 222 1 46688899998
Q ss_pred CCcEEEech
Q 015862 339 RADLVVYGR 347 (399)
Q Consensus 339 ~~D~V~~gR 347 (399)
+|.+++-+
T Consensus 213 -AdGl~IE~ 220 (250)
T PRK13397 213 -ANGIMMEV 220 (250)
T ss_pred -CCEEEEEe
Confidence 99877754
No 357
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.17 Score=46.70 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechH
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 348 (399)
+.+++..+++.|.+.|++.|+|+-++ +...+.++.+++.++.-+|+.|-+ |+++++++++.| ++|+.- |
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG-a~fiVs--P 92 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG-AQFIVS--P 92 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC-CCEEEC--C
Confidence 46789999999999999999986442 123467888889888778888888 999999999999 887753 1
Q ss_pred HhhCCcHHHHHH
Q 015862 349 FLANPDLPRRFE 360 (399)
Q Consensus 349 ~iadPdl~~k~~ 360 (399)
- .||++.+...
T Consensus 93 ~-~~~ev~~~a~ 103 (211)
T COG0800 93 G-LNPEVAKAAN 103 (211)
T ss_pred C-CCHHHHHHHH
Confidence 1 3455555433
No 358
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=94.43 E-value=1.3 Score=41.53 Aligned_cols=129 Identities=18% Similarity=0.323 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEec
Q 015862 178 IPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 257 (399)
Q Consensus 178 I~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls 257 (399)
....++.| .++|+|-|-+|.=. + + .-+..+++.||+. |- ..++=++
T Consensus 71 P~~~i~~~-------~~aGad~it~H~Ea-----------~----~----------~~~~~~i~~Ik~~-G~-kaGlaln 116 (229)
T PRK09722 71 PQDYIDQL-------ADAGADFITLHPET-----------I----N----------GQAFRLIDEIRRA-GM-KVGLVLN 116 (229)
T ss_pred HHHHHHHH-------HHcCCCEEEECccC-----------C----c----------chHHHHHHHHHHc-CC-CEEEEeC
Confidence 44455555 45699999999531 0 0 1245788888886 22 5788888
Q ss_pred CCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe--CCCcccccccCCCchhhHHHHhhc-----CCcEEEeCCCCHHH
Q 015862 258 PFANYMESGDSNPEALGLYMAESLNKYGILYCHMV--EPRMKTREEKSECPHSLLPMRKAF-----KGTFLVAGGYDRED 330 (399)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~Ggit~~~ 330 (399)
+. .+.+....++.. +|+|-+- .|.+......+...+-++++|+.. +..+-+-||++.+.
T Consensus 117 P~---------T~~~~l~~~l~~-----vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~ 182 (229)
T PRK09722 117 PE---------TPVESIKYYIHL-----LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKT 182 (229)
T ss_pred CC---------CCHHHHHHHHHh-----cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHH
Confidence 73 345544444432 4665442 232221111111112233344332 23477789999999
Q ss_pred HHHHHHcCCCcEEEechH-Hhh-CCcH
Q 015862 331 GNKAIAEGRADLVVYGRL-FLA-NPDL 355 (399)
Q Consensus 331 a~~~L~~G~~D~V~~gR~-~ia-dPdl 355 (399)
+.++.+.| +|.+.+|+. ++. +++.
T Consensus 183 i~~~~~aG-ad~~V~Gss~iF~~~~d~ 208 (229)
T PRK09722 183 YEKLMEAG-ADVFIVGTSGLFNLDEDI 208 (229)
T ss_pred HHHHHHcC-CCEEEEChHHHcCCCCCH
Confidence 99999999 999999976 665 4564
No 359
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=94.42 E-value=1.4 Score=40.70 Aligned_cols=118 Identities=22% Similarity=0.220 Sum_probs=71.5
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCce--EEEecCCcccCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRV--GIRLSPFANYMESGD 267 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v--~vrls~~~~~~~~~~ 267 (399)
+.+.+.+.|.|+||+-. ..+-++.+|+..+- +| .++++..
T Consensus 69 ~i~~~~~ld~VQlHG~e-----------------------------~~~~~~~l~~~~~~-~v~kai~v~~~-------- 110 (208)
T COG0135 69 EIAEELGLDAVQLHGDE-----------------------------DPEYIDQLKEELGV-PVIKAISVSEE-------- 110 (208)
T ss_pred HHHHhcCCCEEEECCCC-----------------------------CHHHHHHHHhhcCC-ceEEEEEeCCc--------
Confidence 45566899999999754 16778888888632 33 4444431
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCccccc--ccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEe
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTRE--EKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~ 345 (399)
.+ .... .....-+|.+-+....-.... .....|..+... ....|++..||++|+...++|+.+...+|=+
T Consensus 111 ~~-----~~~~-~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDv 182 (208)
T COG0135 111 GD-----LELA-AREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALGPPYGVDV 182 (208)
T ss_pred cc-----hhhh-hhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhcCCceEEe
Confidence 10 1111 122233666655443211111 111233333333 3578899999999999999999985588888
Q ss_pred chHHhhCC
Q 015862 346 GRLFLANP 353 (399)
Q Consensus 346 gR~~iadP 353 (399)
..+.=++|
T Consensus 183 SSGVE~~p 190 (208)
T COG0135 183 SSGVESSP 190 (208)
T ss_pred ccccccCC
Confidence 88876665
No 360
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=94.39 E-value=1.1 Score=41.92 Aligned_cols=118 Identities=15% Similarity=0.040 Sum_probs=76.3
Q ss_pred CCCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHH
Q 015862 100 IWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIP 179 (399)
Q Consensus 100 l~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~ 179 (399)
...++.++..+++++.+++.|..+.+.+.+.++..
T Consensus 101 ~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~--------------------------------------------- 135 (237)
T PF00682_consen 101 KSREEALERIEEAVKYAKELGYEVAFGCEDASRTD--------------------------------------------- 135 (237)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSS---------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHhcCCceEeCcccccccc---------------------------------------------
Confidence 33467788999999999999999988886643211
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 015862 180 QIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPF 259 (399)
Q Consensus 180 ~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~ 259 (399)
.+.+.+.++++.++|.|.|-|--.-|+ .. +.-+.++++++|+..++-+|++-..-
T Consensus 136 --~~~~~~~~~~~~~~g~~~i~l~Dt~G~-------------------~~---P~~v~~lv~~~~~~~~~~~l~~H~Hn- 190 (237)
T PF00682_consen 136 --PEELLELAEALAEAGADIIYLADTVGI-------------------MT---PEDVAELVRALREALPDIPLGFHAHN- 190 (237)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEEEETTS--------------------S----HHHHHHHHHHHHHHSTTSEEEEEEBB-
T ss_pred --HHHHHHHHHHHHHcCCeEEEeeCccCC-------------------cC---HHHHHHHHHHHHHhccCCeEEEEecC-
Confidence 134677788888999999987644442 22 23468999999999976456665543
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMK 297 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~ 297 (399)
++ +. +..-+-...++|+++|+.+-..++
T Consensus 191 -d~-----Gl----a~An~laA~~aGa~~id~t~~GlG 218 (237)
T PF00682_consen 191 -DL-----GL----AVANALAALEAGADRIDGTLGGLG 218 (237)
T ss_dssp -TT-----S-----HHHHHHHHHHTT-SEEEEBGGGGS
T ss_pred -Cc-----cc----hhHHHHHHHHcCCCEEEccCccCC
Confidence 11 11 111122224579999998754443
No 361
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.35 E-value=0.65 Score=43.92 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=83.3
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++||++|-+.+.. ++-- -=..|.--=+++. +++.++.|.+.+. -||.+.+-.
T Consensus 19 ~~SAr~~e~~Gf~ai~~sg~~---~a~s-----~G~pD~~~lt~~e----~~~~~~~I~~~~~-iPv~vD~d~------- 78 (238)
T PF13714_consen 19 ALSARLAERAGFDAIATSGAG---VAAS-----LGYPDGGLLTLTE----MLAAVRRIARAVS-IPVIVDADT------- 78 (238)
T ss_dssp HHHHHHHHHTT-SEEEEHHHH---HHHH-----TTS-SSS-S-HHH----HHHHHHHHHHHSS-SEEEEE-TT-------
T ss_pred HHHHHHHHHcCCCEEEechHH---HHHH-----cCCCCCCCCCHHH----HHHHHHHHHhhhc-CcEEEEccc-------
Confidence 678899999999999866332 2211 1123321112222 2455666666662 388887643
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc-ccCCCchhhHHHHhhc---CC-cEEEeCCCC------------H
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE-EKSECPHSLLPMRKAF---KG-TFLVAGGYD------------R 328 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~ir~~~---~~-pvi~~Ggit------------~ 328 (399)
|.+++.....+.++.++++|+.-+++-...++... .-.+..+++.+||.+. +. .++.+.+.+ .
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 23444667888999999999999999765322111 1112234555555443 22 244444321 2
Q ss_pred HHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhC
Q 015862 329 EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELN 362 (399)
Q Consensus 329 ~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g 362 (399)
+.++.+.+.| +|+|.+ +.+.+.+-.+++.+.
T Consensus 159 ~R~~aY~eAG-AD~ifi--~~~~~~~~i~~~~~~ 189 (238)
T PF13714_consen 159 ERAKAYAEAG-ADMIFI--PGLQSEEEIERIVKA 189 (238)
T ss_dssp HHHHHHHHTT--SEEEE--TTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCEEEe--CCCCCHHHHHHHHHh
Confidence 3456677777 999987 445666555555543
No 362
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.33 E-value=0.17 Score=51.58 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHhhhhhC-ceEEEEeCCCcccccccCC---CchhhHHHHhhc--------CCcEEEeCCC-CHHHHHHHHHcCCCcEEE
Q 015862 278 AESLNKYG-ILYCHMVEPRMKTREEKSE---CPHSLLPMRKAF--------KGTFLVAGGY-DREDGNKAIAEGRADLVV 344 (399)
Q Consensus 278 ~~~Le~~G-vd~l~v~~~~~~~~~~~~~---~~~~~~~ir~~~--------~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 344 (399)
++.+++.| +|.|.+. ...+......+ ....+..+++.+ ++||++.||| |++.+..++.-| +|+|.
T Consensus 169 A~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alG-Ad~V~ 246 (418)
T cd04742 169 AELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALG-ADFIV 246 (418)
T ss_pred HHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcC-CcEEe
Confidence 44556667 5888764 21111001111 122334445554 6899999999 999999999999 99999
Q ss_pred echHHhhCC
Q 015862 345 YGRLFLANP 353 (399)
Q Consensus 345 ~gR~~iadP 353 (399)
+|..+++-+
T Consensus 247 ~GT~flat~ 255 (418)
T cd04742 247 TGSINQCTV 255 (418)
T ss_pred eccHHHhCc
Confidence 999999966
No 363
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.32 E-value=1.5 Score=40.36 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=36.3
Q ss_pred chhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcH
Q 015862 306 PHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 306 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl 355 (399)
..+++.++.-++ +|++.+||++++.+.+.|+.|.+ .++.|..+. +.++
T Consensus 132 ~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~-~~~ggs~l~-~~~~ 180 (201)
T PRK06015 132 AAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNV-VCVGGSWVA-PKEL 180 (201)
T ss_pred HHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCe-EEEEchhhC-Cchh
Confidence 357777887776 88999999999999999999855 444465554 4433
No 364
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.28 E-value=0.42 Score=45.67 Aligned_cols=77 Identities=14% Similarity=0.042 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
.++.++-++.++++|+|.+-+... + .+.++.|.+.+++|+|+.|.=..-+.+-++- .|++++...
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v---------~-~~~~~~i~~~v~iP~igiGaG~~~dgqvlv~---~D~lG~~~~-- 221 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECV---------P-AELAKEITEALSIPTIGIGAGPDCDGQVLVW---HDMLGLSPG-- 221 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCC---------C-HHHHHHHHHhCCCCEEEeccCCCCCceeehH---HhhcCCCCC--
Confidence 567788899999999998876321 1 2588889999999999877521112222221 355665433
Q ss_pred hCCcHHHHHHhC
Q 015862 351 ANPDLPRRFELN 362 (399)
Q Consensus 351 adPdl~~k~~~g 362 (399)
.-|-++++..+.
T Consensus 222 ~~p~f~k~~~~~ 233 (254)
T cd06557 222 FKPKFVKRYADL 233 (254)
T ss_pred CCCCcHHHHhhh
Confidence 356677666654
No 365
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=94.28 E-value=0.31 Score=46.21 Aligned_cols=138 Identities=16% Similarity=0.229 Sum_probs=71.6
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCC----CCCCC----chhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRT----DQYGG----SLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~----D~yGG----slenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
..|+++|+|+|+... |-...++++....+. +.+++ ++-++.+|..|-...+.+.+-..-|..=.++++
T Consensus 3 ~~A~~aGaDaVKFQ~---~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd- 78 (241)
T PF03102_consen 3 DAAAEAGADAVKFQT---FTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFD- 78 (241)
T ss_dssp HHHHHHT-SEEEEEE---B-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred HHHHHhCCCEEEEEE---EchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCC-
Confidence 457889999999764 446667776543322 11222 345667788888888888873221222224431
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHH---HHHHH-H
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DRED---GNKAI-A 336 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~---a~~~L-~ 336 (399)
.+. ++.|++.|++++-|..+. ..++.+++.+.+ .+.|||.+-|. |.++ |.+.+ +
T Consensus 79 ----------~~s---~d~l~~~~~~~~KIaS~d-------l~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~~~~~ 137 (241)
T PF03102_consen 79 ----------EES---VDFLEELGVPAYKIASGD-------LTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAVEVLRE 137 (241)
T ss_dssp ----------HHH---HHHHHHHT-SEEEE-GGG-------TT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHHHHHH
T ss_pred ----------HHH---HHHHHHcCCCEEEecccc-------ccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHHHHHh
Confidence 122 334566789999885442 225567776666 78998877776 6554 55666 5
Q ss_pred cCCCcEEEechHHhhCC
Q 015862 337 EGRADLVVYGRLFLANP 353 (399)
Q Consensus 337 ~G~~D~V~~gR~~iadP 353 (399)
.|..+++.+ -..-.-|
T Consensus 138 ~~~~~l~ll-HC~s~YP 153 (241)
T PF03102_consen 138 AGNEDLVLL-HCVSSYP 153 (241)
T ss_dssp HCT--EEEE-EE-SSSS
T ss_pred cCCCCEEEE-ecCCCCC
Confidence 665665544 3333444
No 366
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.4 Score=46.68 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=66.8
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc--------c------ccCCC----chhhHHH
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR--------E------EKSEC----PHSLLPM 312 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~--------~------~~~~~----~~~~~~i 312 (399)
++.+++.++ ...++..+++..+.+.++|-+-++..+...+ . ...+. ...++.+
T Consensus 254 pvl~kiapD---------L~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~m 324 (398)
T KOG1436|consen 254 PVLVKIAPD---------LSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAM 324 (398)
T ss_pred ceEEEeccc---------hhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHH
Confidence 799999982 2334445566656666777665443222110 0 11111 2234455
Q ss_pred Hhhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhC-CcHHHHHHhC
Q 015862 313 RKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLAN-PDLPRRFELN 362 (399)
Q Consensus 313 r~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iad-Pdl~~k~~~g 362 (399)
.+.+ .+|||++||+ +-.||-+-|+.| +.+|-+..++.-+ |-++.||+.-
T Consensus 325 Y~lt~g~IpiIG~GGV~SG~DA~EkiraG-ASlvQlyTal~yeGp~i~~kIk~E 377 (398)
T KOG1436|consen 325 YTLTRGKIPIIGCGGVSSGKDAYEKIRAG-ASLVQLYTALVYEGPAIIEKIKRE 377 (398)
T ss_pred HHhccCCCceEeecCccccHhHHHHHhcC-chHHHHHHHHhhcCchhHHHHHHH
Confidence 5555 4899999999 899999999999 9999999998654 7888888753
No 367
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.25 E-value=0.67 Score=44.88 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=66.0
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE
Q 015862 218 VNDRTDQYGGS--LENRCRFA---LEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM 291 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~---~eii~avR~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v 291 (399)
.|||-+-|-+- .+|-.++. .+.++++|+..+.. +|.|-+. +.+++.+. .++|+|.|-+
T Consensus 157 ~~HR~gL~d~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~------------tleea~ea----~~~gaDiI~L 220 (281)
T PRK06106 157 MNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVD------------TLDQLEEA----LELGVDAVLL 220 (281)
T ss_pred ccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeC------------CHHHHHHH----HHcCCCEEEe
Confidence 56666555432 34554443 57777888877633 4555332 23443333 3679998876
Q ss_pred eCCCcccccccCCCchhhHHHHhhc--CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 292 VEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
..-+ ++.++++-+.+ ..++-++||+|++.+.++.+.| +|+|++|....
T Consensus 221 Dn~s----------~e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tG-VD~Is~Galth 270 (281)
T PRK06106 221 DNMT----------PDTLREAVAIVAGRAITEASGRITPETAPAIAASG-VDLISVGWLTH 270 (281)
T ss_pred CCCC----------HHHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 4221 11222211112 3568999999999999999998 99999998765
No 368
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.12 E-value=0.31 Score=43.65 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=68.0
Q ss_pred cCCCCCCCCc--hhhhhHH---HHHHHHHHHHHhCCCc-eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe
Q 015862 219 NDRTDQYGGS--LENRCRF---ALEIVEAVSNEIGADR-VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV 292 (399)
Q Consensus 219 N~R~D~yGGs--lenR~r~---~~eii~avR~~vg~~~-v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~ 292 (399)
|||.+-+..- ..|-.++ +.+.++++|+..+..+ |.|.... .+++.+ ..++|+|.|-+.
T Consensus 44 ~hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~------------~ee~~e----a~~~g~d~I~lD 107 (169)
T PF01729_consen 44 NHRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVEN------------LEEAEE----ALEAGADIIMLD 107 (169)
T ss_dssp HHHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESS------------HHHHHH----HHHTT-SEEEEE
T ss_pred eEECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCC------------HHHHHH----HHHhCCCEEEec
Confidence 5666555432 3454444 5788888888887664 6765542 333333 334789988875
Q ss_pred CCCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 293 EPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..+.. .....++.++... ++.+.++||+|++.+.++.+.| +|++++|.....=
T Consensus 108 ~~~~~------~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~g-vD~isvg~~~~~a 161 (169)
T PF01729_consen 108 NMSPE------DLKEAVEELRELNPRVKIEASGGITLENIAEYAKTG-VDVISVGSLTHSA 161 (169)
T ss_dssp S-CHH------HHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT--SEEEECHHHHSB
T ss_pred CcCHH------HHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcC-CCEEEcChhhcCC
Confidence 43110 1122334444433 3668899999999999999999 9999999865443
No 369
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=94.06 E-value=0.21 Score=51.26 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 317 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 317 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
++||++.||| |++.+..++.-| +|+|.+|..+++-+
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLG-AdgV~~GT~flat~ 260 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLG-ADFIVTGSVNQCTV 260 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcC-CcEEEeccHHHhCc
Confidence 7899999999 999999999999 99999999999965
No 370
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.04 E-value=0.89 Score=47.56 Aligned_cols=125 Identities=18% Similarity=0.104 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecC
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSP 258 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~ 258 (399)
+++.|++ .+.++|.|.+.|-.+. |..+-+...++++|++-..- .|++-+++
T Consensus 98 vv~~fv~---~a~~~Gidi~RIfd~l------------------------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp 150 (499)
T PRK12330 98 VVDRFVE---KSAENGMDVFRVFDAL------------------------NDPRNLEHAMKAVKKVGKHAQGTICYTVSP 150 (499)
T ss_pred HHHHHHH---HHHHcCCCEEEEEecC------------------------ChHHHHHHHHHHHHHhCCeEEEEEEEecCC
Confidence 4555544 4566799999988665 22356677788888765422 24445555
Q ss_pred CcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEEEeC----CCCHHHHH
Q 015862 259 FANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAG----GYDREDGN 332 (399)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G----git~~~a~ 332 (399)
..+.+...++++.+++.|+|.|.+.... + ...+....+.++.+|+.+ ++||-.=. |+......
T Consensus 151 ---------~~t~e~~~~~a~~l~~~Gad~I~IkDta-G-ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~l 219 (499)
T PRK12330 151 ---------IHTVEGFVEQAKRLLDMGADSICIKDMA-A-LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLM 219 (499)
T ss_pred ---------CCCHHHHHHHHHHHHHcCCCEEEeCCCc-c-CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHH
Confidence 3367888999999999999998875321 1 011112345778889988 57764322 23456677
Q ss_pred HHHHcCCCcEEE
Q 015862 333 KAIAEGRADLVV 344 (399)
Q Consensus 333 ~~L~~G~~D~V~ 344 (399)
.+++.| ||.|-
T Consensus 220 aAieAG-ad~vD 230 (499)
T PRK12330 220 KAIEAG-VDVVD 230 (499)
T ss_pred HHHHcC-CCEEE
Confidence 899998 88764
No 371
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.02 E-value=0.09 Score=55.17 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=49.9
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
..+-++.|.++|+|.|.+....- .....++.+++||+.++...+..|++ |+++|+.+++.| +|+|.+
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g----~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG-aD~i~v 316 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQG----DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG-VDGLRV 316 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC----CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC-cCEEEE
Confidence 46778889999999998754310 11123568899999987445555666 999999999999 999955
No 372
>TIGR03586 PseI pseudaminic acid synthase.
Probab=93.81 E-value=1 Score=44.66 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccC----CCCCCCC-c---hhhhhHHHHHHHHHHHHHhCCCceEEEe--
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVND----RTDQYGG-S---LENRCRFALEIVEAVSNEIGADRVGIRL-- 256 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~----R~D~yGG-s---lenR~r~~~eii~avR~~vg~~~v~vrl-- 256 (399)
+-+..|+++|+|+|.... |-...|.++..+. +...|.+ + +-.+..|..|....+.+.+-. .++.+
T Consensus 21 ~lI~~A~~aGAdavKFQ~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~--~Gi~~~s 95 (327)
T TIGR03586 21 AMIEAAKAAGADAIKLQT---YTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKE--LGLTIFS 95 (327)
T ss_pred HHHHHHHHhCCCEEEeee---ccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHH--hCCcEEE
Confidence 334556789999999775 6667776665432 2234543 2 233456667777777665522 22222
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHH---HH
Q 015862 257 SPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DRED---GN 332 (399)
Q Consensus 257 s~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~---a~ 332 (399)
+++ +.+ -+..|++.|++++-|..+.. .+..+++.+.+ .+.||+..-|. |.++ |.
T Consensus 96 tpf----------d~~----svd~l~~~~v~~~KI~S~~~-------~n~~LL~~va~-~gkPvilstG~~t~~Ei~~Av 153 (327)
T TIGR03586 96 SPF----------DET----AVDFLESLDVPAYKIASFEI-------TDLPLIRYVAK-TGKPIIMSTGIATLEEIQEAV 153 (327)
T ss_pred ccC----------CHH----HHHHHHHcCCCEEEECCccc-------cCHHHHHHHHh-cCCcEEEECCCCCHHHHHHHH
Confidence 232 111 23456778999988865432 24556766665 58898888776 7655 44
Q ss_pred HHHHcCCC-cEEEe
Q 015862 333 KAIAEGRA-DLVVY 345 (399)
Q Consensus 333 ~~L~~G~~-D~V~~ 345 (399)
+.|.+.++ +++.+
T Consensus 154 ~~i~~~g~~~i~Ll 167 (327)
T TIGR03586 154 EACREAGCKDLVLL 167 (327)
T ss_pred HHHHHCCCCcEEEE
Confidence 55554335 55443
No 373
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=93.79 E-value=3 Score=38.55 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=28.9
Q ss_pred cCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 316 FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 316 ~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
++.|++..||++|+...++++.-..++|=+..++=..|
T Consensus 153 ~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~ 190 (210)
T PRK01222 153 LAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAP 190 (210)
T ss_pred cCCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCC
Confidence 46799999999999999999864466676666654433
No 374
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.76 E-value=7.4 Score=38.61 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=85.3
Q ss_pred HHHHHHHHhC-----------CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE
Q 015862 187 LAARNAIEAG-----------FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR 255 (399)
Q Consensus 187 ~aA~~a~~aG-----------fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr 255 (399)
+..++|.++| |+-|-|.+.+ -++|...+...++++..+.. |- .|-.-
T Consensus 101 e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~--------------------l~~eeNi~~T~~vve~Ah~~-gi-~VEaE 158 (340)
T cd00453 101 PWIDGLLDAGEKHFAATGKPLFSSHMIDLSE--------------------ESLQENIEICSKYLERMSKI-GM-TLEIE 158 (340)
T ss_pred HHHHHHHHcCCccccccCCCCceeEEecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEE
Confidence 4467889999 9999888665 25788888999999888765 22 23222
Q ss_pred ---ecCCcccCCCC------CCChHHHHHHHHHhhhhhC----ceEEEEeCCCccccccc-CC--CchhhHHHHhhc---
Q 015862 256 ---LSPFANYMESG------DSNPEALGLYMAESLNKYG----ILYCHMVEPRMKTREEK-SE--CPHSLLPMRKAF--- 316 (399)
Q Consensus 256 ---ls~~~~~~~~~------~~~~~~~~~~l~~~Le~~G----vd~l~v~~~~~~~~~~~-~~--~~~~~~~ir~~~--- 316 (399)
+...++..... ...+.+++.++++ +.| +|.|-++-++....+.. .+ ..+.++.|++.+
T Consensus 159 lG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~---~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~ 235 (340)
T cd00453 159 LGCTGGEEDGVDNSHMDASALYTQPEDVDYAYT---ELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKK 235 (340)
T ss_pred EEecCCccCCcccccccccccCCCHHHHHHHHH---HhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhh
Confidence 22222110000 0224566666664 567 99998887765444432 22 456788899888
Q ss_pred ------CCcEEEeCC--CCHHHHHHHHHcCCCcEEEec
Q 015862 317 ------KGTFLVAGG--YDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 317 ------~~pvi~~Gg--it~~~a~~~L~~G~~D~V~~g 346 (399)
++|++.=|+ ++.++..++++.|.+- |=++
T Consensus 236 ~gl~~~~~pLVlHGgSG~~~e~~~~ai~~Gi~K-iNi~ 272 (340)
T cd00453 236 HNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVK-MNID 272 (340)
T ss_pred cccCCCCCceEEeCCCCCCHHHHHHHHHcCCeE-EEcc
Confidence 788766655 4788899999999443 4343
No 375
>PRK02227 hypothetical protein; Provisional
Probab=93.76 E-value=2.4 Score=40.00 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
.+-|+.|.++|.|.|++.=. .....|+ ....+|++|++.++.. +|+--+.-. .
T Consensus 10 ~eEA~~Al~~GaDiIDvK~P---------------~~GaLGA-------~~p~vir~Iv~~~~~~~pvSAtiGD~---p- 63 (238)
T PRK02227 10 LEEALEALAGGADIIDVKNP---------------KEGSLGA-------NFPWVIREIVAAVPGRKPVSATIGDV---P- 63 (238)
T ss_pred HHHHHHHHhcCCCEEEccCC---------------CCCCCCC-------CCHHHHHHHHHHhCCCCCceeeccCC---C-
Confidence 56688999999999998732 2333443 3367888899988765 676655421 1
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhH----HHHhhc-CCcEEEeC--------CCCHHHH
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLL----PMRKAF-KGTFLVAG--------GYDREDG 331 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~----~ir~~~-~~pvi~~G--------git~~~a 331 (399)
..+ .+...-+..+...|+||+.|--.... ......+.++ .++... +..|++++ .+++.+.
T Consensus 64 ---~~p-~~~~~aa~~~a~~GvDyVKvGl~~~~---~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l 136 (238)
T PRK02227 64 ---YKP-GTISLAALGAAATGADYVKVGLYGGK---TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSL 136 (238)
T ss_pred ---CCc-hHHHHHHHHHHhhCCCEEEEcCCCCC---cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHH
Confidence 112 33444555667789999987432111 1111122222 233332 23455544 1245555
Q ss_pred HHHHHcCCCcEEEec
Q 015862 332 NKAIAEGRADLVVYG 346 (399)
Q Consensus 332 ~~~L~~G~~D~V~~g 346 (399)
-..+.+-.+|.+|+-
T Consensus 137 ~~~a~~aGf~g~MlD 151 (238)
T PRK02227 137 PAIAADAGFDGAMLD 151 (238)
T ss_pred HHHHHHcCCCEEEEe
Confidence 555554459999983
No 376
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=93.72 E-value=2.9 Score=39.93 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEe
Q 015862 177 EIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRL 256 (399)
Q Consensus 177 eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrl 256 (399)
++++|++.-.+-|+...++|+|||-|-=-+ =-|.. ++ .--.......-++.+||+.++ -|++|-+
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~-------D~Py~-~~------~~~etvaaM~~i~~~v~~~~~-~p~GVnv 87 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMG-------DVPYP-KR------VGPETVAAMARIAREVRREVS-VPVGVNV 87 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCC-------CCCcc-CC------CCHHHHHHHHHHHHHHHHhCC-CCEEeee
Confidence 899999999999999999999999875222 11221 11 112355677888899999884 3788866
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc-cccC--CCchhhHHHHhhcCCc--EEEeCC------
Q 015862 257 SPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR-EEKS--ECPHSLLPMRKAFKGT--FLVAGG------ 325 (399)
Q Consensus 257 s~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~-~~~~--~~~~~~~~ir~~~~~p--vi~~Gg------ 325 (399)
-.+ +...++.+|. ..|.||+-+..-..... .... +...-+-+.|+.++.. |++.=.
T Consensus 88 L~n----------d~~aalaiA~---A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~ 154 (254)
T PF03437_consen 88 LRN----------DPKAALAIAA---ATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSP 154 (254)
T ss_pred ecC----------CCHHHHHHHH---HhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhccc
Confidence 432 1223444553 46899987532110000 0111 1112233466665433 332111
Q ss_pred C---CH-HHHHHHHHcCCCcEEEechHHh---hCCcHHHHHHhCCC
Q 015862 326 Y---DR-EDGNKAIAEGRADLVVYGRLFL---ANPDLPRRFELNAP 364 (399)
Q Consensus 326 i---t~-~~a~~~L~~G~~D~V~~gR~~i---adPdl~~k~~~g~~ 364 (399)
+ +. +.++.+++.+.+|.|.+.=... .+|+..+++++..+
T Consensus 155 l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~ 200 (254)
T PF03437_consen 155 LATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP 200 (254)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC
Confidence 1 23 4456787888899888865543 45566778887765
No 377
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.67 E-value=1.7 Score=42.02 Aligned_cols=127 Identities=11% Similarity=0.098 Sum_probs=76.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 015862 171 RRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 250 (399)
Q Consensus 171 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~ 250 (399)
..+..+.+.++++. ..+.|.|||-+.+.-| +|. -=+.|.|.+++..++++ ++.
T Consensus 15 g~iD~~~~~~li~~-------l~~~Gv~Gl~~~GstG----E~~-----------~Lt~eEr~~l~~~~~~~----~~~- 67 (279)
T cd00953 15 NKIDKEKFKKHCEN-------LISKGIDYVFVAGTTG----LGP-----------SLSFQEKLELLKAYSDI----TDK- 67 (279)
T ss_pred CCcCHHHHHHHHHH-------HHHcCCcEEEEcccCC----Ccc-----------cCCHHHHHHHHHHHHHH----cCC-
Confidence 34555555555554 4679999999887654 111 12567777666665544 432
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE------eC
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV------AG 324 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~G 324 (399)
|.+=++ ....++++++++..++.|+|.+-+..|.+...........+.+.|.+ ++|++. +|
T Consensus 68 -vi~gvg----------~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg 134 (279)
T cd00953 68 -VIFQVG----------SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATG 134 (279)
T ss_pred -EEEEeC----------cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccC
Confidence 322122 23567899999999999999999877754321111112234455555 678552 23
Q ss_pred C-CCHHHHHHHHHc
Q 015862 325 G-YDREDGNKAIAE 337 (399)
Q Consensus 325 g-it~~~a~~~L~~ 337 (399)
- ++++..+++.+.
T Consensus 135 ~~l~~~~l~~L~~~ 148 (279)
T cd00953 135 YDINARMAKEIKKA 148 (279)
T ss_pred CCCCHHHHHHHHhc
Confidence 2 478888888864
No 378
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.62 E-value=0.74 Score=44.81 Aligned_cols=112 Identities=17% Similarity=0.071 Sum_probs=68.4
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe
Q 015862 218 VNDRTDQYGGS--LENRCRFA---LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV 292 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~---~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~ 292 (399)
.|||-+-+-+- .+|-.++. .+.++++|+..+...|.|... +.+++.+ ..++|+|.|-+.
T Consensus 169 ~nHR~gLsD~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEve------------tleea~e----A~~aGaDiImLD 232 (294)
T PRK06978 169 ENQRLALYDGILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVE------------TLAQLET----ALAHGAQSVLLD 232 (294)
T ss_pred cCcCCCCCceEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcC------------CHHHHHH----HHHcCCCEEEEC
Confidence 67777666553 45666654 466777776554223444332 3444333 336899988764
Q ss_pred CCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 293 EPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
.-+.. .....++.++. .+.+-++||+|++.+.++.+.| +|+|++|.....-|.
T Consensus 233 nmspe------~l~~av~~~~~--~~~lEaSGGIt~~ni~~yA~tG-VD~IS~galthsa~~ 285 (294)
T PRK06978 233 NFTLD------MMREAVRVTAG--RAVLEVSGGVNFDTVRAFAETG-VDRISIGALTKDVRA 285 (294)
T ss_pred CCCHH------HHHHHHHhhcC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCcc
Confidence 22100 01112222222 3568899999999999999998 999999987666553
No 379
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=93.62 E-value=0.75 Score=44.50 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh
Q 015862 236 ALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA 315 (399)
Q Consensus 236 ~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~ 315 (399)
+.+.++++|+..+...|.|-+. +.+++. ...++|+|.|-++.- +. ......++.+++.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~------------tleea~----ea~~~GaDiI~lDn~--~~----e~l~~~v~~l~~~ 232 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEAD------------TIEQAL----TVLQASPDILQLDKF--TP----QQLHHLHERLKFF 232 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECC------------CHHHHH----HHHHcCcCEEEECCC--CH----HHHHHHHHHHhcc
Confidence 4578888888775435665443 234433 344689999887522 10 0112233334321
Q ss_pred -cCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 316 -FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 316 -~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
-++.+.++||++++.+.++.+.| +|++++|-...+-|
T Consensus 233 ~~~~~leasGGI~~~ni~~ya~~G-vD~is~gal~~a~~ 270 (277)
T TIGR01334 233 DHIPTLAAAGGINPENIADYIEAG-IDLFITSAPYYAAP 270 (277)
T ss_pred CCCEEEEEECCCCHHHHHHHHhcC-CCEEEeCcceecCc
Confidence 23558899999999999999999 99999998766665
No 380
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.59 E-value=0.36 Score=47.62 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=51.7
Q ss_pred HHHHhhhhhCceEEEEeCCCcccccccCC----CchhhHHHHhh------cCCcEEEeCCC-CHHHHHHHHHcCC-----
Q 015862 276 YMAESLNKYGILYCHMVEPRMKTREEKSE----CPHSLLPMRKA------FKGTFLVAGGY-DREDGNKAIAEGR----- 339 (399)
Q Consensus 276 ~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~----~~~~~~~ir~~------~~~pvi~~Ggi-t~~~a~~~L~~G~----- 339 (399)
..++.+++.|+|.|-+...-.+....... ....+..+.+. .++|||+.||| |...+..++.-|.
T Consensus 114 ~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~ 193 (320)
T cd04743 114 GLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAER 193 (320)
T ss_pred HHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCccccc
Confidence 35677889999998764322111001100 11122233322 27999999999 8888877777773
Q ss_pred -C-cEEEechHHhhCCcHH
Q 015862 340 -A-DLVVYGRLFLANPDLP 356 (399)
Q Consensus 340 -~-D~V~~gR~~iadPdl~ 356 (399)
+ +.|-||..|++-++-+
T Consensus 194 Ga~~GV~mGTrFl~t~Es~ 212 (320)
T cd04743 194 GAKVGVLMGTAYLFTEEAV 212 (320)
T ss_pred ccccEEEEccHHhcchhhc
Confidence 2 8999999999977663
No 381
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.55 E-value=2.4 Score=40.11 Aligned_cols=154 Identities=20% Similarity=0.152 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++|||+|-+-+.. ++-.+ =..|.--=+++ -.++.++.|...+. -||.+.+..
T Consensus 19 ~~sA~~~e~~G~~ai~~s~~~---~~~s~-----G~pD~~~~~~~----e~~~~~~~I~~~~~-~Pv~~D~~~------- 78 (243)
T cd00377 19 ALSARLAERAGFKAIYTSGAG---VAASL-----GLPDGGLLTLD----EVLAAVRRIARAVD-LPVIADADT------- 78 (243)
T ss_pred HHHHHHHHHcCCCEEEeccHH---HHHhc-----CCCCCCcCCHH----HHHHHHHHHHhhcc-CCEEEEcCC-------
Confidence 567888899999999976432 22111 11121011222 33444555555442 266665532
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCccccc---ccC---CCchh---hHHHHhhcC----CcEEEe--------C
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTRE---EKS---ECPHS---LLPMRKAFK----GTFLVA--------G 324 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~---~~~---~~~~~---~~~ir~~~~----~pvi~~--------G 324 (399)
|.++ .+...+.++.+.+.|++.+++-........ .+. +..+. ++.++++.+ .+|++- .
T Consensus 79 G~g~-~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 79 GYGN-ALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCC-HHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 2233 366788899999999999998544321110 010 11123 333444433 334443 2
Q ss_pred CC--CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCC
Q 015862 325 GY--DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNA 363 (399)
Q Consensus 325 gi--t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~ 363 (399)
++ ..+.++.+.+.| +|+|.+--+ .+++..+++.+..
T Consensus 158 ~~~eai~Ra~ay~~AG-AD~v~v~~~--~~~~~~~~~~~~~ 195 (243)
T cd00377 158 GLDEAIERAKAYAEAG-ADGIFVEGL--KDPEEIRAFAEAP 195 (243)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEeCCC--CCHHHHHHHHhcC
Confidence 34 256677888888 999998433 3888888888763
No 382
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.49 E-value=1.2 Score=43.27 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=78.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhC-CCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAG-FDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 250 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aG-fDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~ 250 (399)
.+..+.+.+.++ ...+.| .|||-+.+.-| +| +-=+.|.|.+++..+++.+.. .-
T Consensus 17 ~iD~~~~~~~i~-------~~i~~G~v~gi~~~GstG----E~-----------~~Lt~eEr~~~~~~~~~~~~~---~~ 71 (290)
T TIGR00683 17 TINEKGLRQIIR-------HNIDKMKVDGLYVGGSTG----EN-----------FMLSTEEKKEIFRIAKDEAKD---QI 71 (290)
T ss_pred CcCHHHHHHHHH-------HHHhCCCcCEEEECCccc----cc-----------ccCCHHHHHHHHHHHHHHhCC---CC
Confidence 355555555554 447789 99999886654 11 123677887766555555422 22
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEE------e
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLV------A 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~------~ 323 (399)
+|.+=++. .+.++++++++..++.|+|.+-+..|.+..+. ......+.+.|-+++ +.||+. +
T Consensus 72 pvi~gv~~----------~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~-~~~i~~yf~~v~~~~~~lpv~lYn~P~~t 140 (290)
T TIGR00683 72 ALIAQVGS----------VNLKEAVELGKYATELGYDCLSAVTPFYYKFS-FPEIKHYYDTIIAETGGLNMIVYSIPFLT 140 (290)
T ss_pred cEEEecCC----------CCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC-HHHHHHHHHHHHhhCCCCCEEEEeCcccc
Confidence 55553332 34677899999999999999998777544321 111233455565555 577552 2
Q ss_pred CC-CCHHHHHHHHH
Q 015862 324 GG-YDREDGNKAIA 336 (399)
Q Consensus 324 Gg-it~~~a~~~L~ 336 (399)
|. ++++...++.+
T Consensus 141 g~~l~~~~i~~L~~ 154 (290)
T TIGR00683 141 GVNMGIEQFGELYK 154 (290)
T ss_pred ccCcCHHHHHHHhc
Confidence 32 37777777765
No 383
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=93.45 E-value=0.69 Score=43.35 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
..|...|...|.|.|.+|.-.|-.+ ||+ |-+|..+.-+.+... .++.+ .|.-.+...- -..
T Consensus 98 vaA~~IA~a~gA~FIRVN~~tg~~~-----------tdq--Giieg~A~e~~r~r~----~L~~~v~vlADv~VKH-a~~ 159 (263)
T COG0434 98 VAALAIAYAVGADFIRVNVLTGAYA-----------TDQ--GIIEGNAAELARYRA----RLGSRVKVLADVHVKH-AVH 159 (263)
T ss_pred HHHHHHHHhcCCCEEEEEeeeceEe-----------ccc--ceecchHHHHHHHHH----hccCCcEEEeecchhc-ccc
Confidence 6677888899999999886553211 221 455655544444333 33333 2333332210 000
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEE
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVV 344 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 344 (399)
. ..-++++ .+...++..+.|.+-++...- ..++..+.++.+++.++.||+++.|++++.+...|+- +|.+.
T Consensus 160 l-~~~~~~~--~v~dtver~~aDaVI~tG~~T----G~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~--adG~I 230 (263)
T COG0434 160 L-GNRSLEE--AVKDTVERGLADAVIVTGSRT----GSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKI--ADGVI 230 (263)
T ss_pred c-CCcCHHH--HHHHHHHccCCCEEEEecccC----CCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHH--cCceE
Confidence 0 1112332 233346666789888875532 3445678889999999999999999999999999986 89999
Q ss_pred echHHhh
Q 015862 345 YGRLFLA 351 (399)
Q Consensus 345 ~gR~~ia 351 (399)
+|..+=.
T Consensus 231 vgT~lK~ 237 (263)
T COG0434 231 VGTSLKK 237 (263)
T ss_pred EEEEEcc
Confidence 9876543
No 384
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.40 E-value=1.3 Score=40.35 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
+|.+.++.+.++|.|.|++-...+- |. .+..+..++++++|+.+ +.++.+-+-.+
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~----~~----------------~~~~~~~~~~~~i~~~~-~~~~~v~l~~~---- 67 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGH----FV----------------PNLTFGPPVVKALRKHT-DLPLDVHLMVE---- 67 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCC----CC----------------CccccCHHHHHHHHhhC-CCcEEEEeeeC----
Confidence 4677888999999999998644321 10 01123368899999877 33443333221
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc-EEEeCCCCHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT-FLVAGGYDREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~~a~~~L~~G~~D~ 342 (399)
++ ..+++.+.+.|+|.+.+|..... ...+.++.+++ .+.. .+..+.-++++..+.+..+ +|+
T Consensus 68 -----d~----~~~~~~~~~~g~dgv~vh~~~~~------~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~-~d~ 130 (211)
T cd00429 68 -----NP----ERYIEAFAKAGADIITFHAEATD------HLHRTIQLIKE-LGMKAGVALNPGTPVEVLEPYLDE-VDL 130 (211)
T ss_pred -----CH----HHHHHHHHHcCCCEEEECccchh------hHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHhh-CCE
Confidence 12 22455556889999888754211 11233444444 3433 3333333444333334444 898
Q ss_pred EEec
Q 015862 343 VVYG 346 (399)
Q Consensus 343 V~~g 346 (399)
|.++
T Consensus 131 i~~~ 134 (211)
T cd00429 131 VLVM 134 (211)
T ss_pred EEEE
Confidence 8664
No 385
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.34 E-value=0.37 Score=44.16 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=35.6
Q ss_pred chhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 306 PHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 306 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
..+++.++.-++ ++++.+||++++.+.+.|+.| +..|++|..++..
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag-~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAG-AVAVGGGSWLFPK 182 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTST-TBSEEEESGGGSH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCC-CEEEEECchhcCH
Confidence 356777777665 789999999999999999999 8899999877643
No 386
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.34 E-value=1.8 Score=44.78 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=84.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE-ecCCccc--
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR-LSPFANY-- 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr-ls~~~~~-- 262 (399)
.+-|+.. +.|+++|=+. +..+-|+||++ -+++||+++. -||..| +=.++..
T Consensus 73 ~~~a~~y-~~gA~aiSVl----------------Te~~~F~Gs~~--------~l~~vr~~v~-~PvLrKDFiid~~QI~ 126 (454)
T PRK09427 73 AEIARVY-KHYASAISVL----------------TDEKYFQGSFD--------FLPIVRAIVT-QPILCKDFIIDPYQIY 126 (454)
T ss_pred HHHHHHH-HcCCeEEEEe----------------cCcCcCCCCHH--------HHHHHHHhCC-CCEEeccccCCHHHHH
Confidence 4455555 7778887754 55667899954 5667788763 244432 1010000
Q ss_pred C--CCC--------CCChHHHHHHHHHhhhhhCceE-EEEeCCCc-------ccc--c-------ccCCCchhhHHHHhh
Q 015862 263 M--ESG--------DSNPEALGLYMAESLNKYGILY-CHMVEPRM-------KTR--E-------EKSECPHSLLPMRKA 315 (399)
Q Consensus 263 ~--~~~--------~~~~~~~~~~l~~~Le~~Gvd~-l~v~~~~~-------~~~--~-------~~~~~~~~~~~ir~~ 315 (399)
. ..| .-.+.++..++.+...+.|++- +++|...- ... . .-.-.......+.+.
T Consensus 127 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ 206 (454)
T PRK09427 127 LARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPL 206 (454)
T ss_pred HHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhh
Confidence 0 000 0011233445555566778774 46653210 000 0 000112344556666
Q ss_pred cC--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 316 FK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 316 ~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
++ +.+|+-+|+ |++++..+ ..| +|.|-+|..++..||..+.+++
T Consensus 207 ip~~~~~vseSGI~t~~d~~~~-~~~-~davLiG~~lm~~~d~~~~~~~ 253 (454)
T PRK09427 207 IPADVIVISESGIYTHAQVREL-SPF-ANGFLIGSSLMAEDDLELAVRK 253 (454)
T ss_pred CCCCcEEEEeCCCCCHHHHHHH-Hhc-CCEEEECHHHcCCCCHHHHHHH
Confidence 64 346777899 99999886 567 9999999999999998776654
No 387
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.29 E-value=0.27 Score=48.64 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
..+.++.+.+.|+++|++.... .. .....+.++.+|+..+ +||++ |.+ |++.|+.+++.| +|+|.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~-G~---~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aG-aD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAH-GH---SVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAG-ADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-CC---cHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcC-CCEEEE
Confidence 4567777778999999875421 10 1123457888888875 77766 666 999999999998 999986
No 388
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.27 E-value=0.39 Score=44.66 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCC---cEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKG---TFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~---pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
+.+++..+++.|.+.|+..++++-.+ +...+.++.+++.++. -+++.|-+ |+++++++++.| ++|+.-
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG-A~Fivs 94 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG-AQFIVS 94 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC-CCEEEC
Confidence 46789999999999999999987432 1234577888887752 36788888 999999999999 998883
Q ss_pred chHHhhCCcHHHHHHh-CCC
Q 015862 346 GRLFLANPDLPRRFEL-NAP 364 (399)
Q Consensus 346 gR~~iadPdl~~k~~~-g~~ 364 (399)
| -.||++.+..++ |.+
T Consensus 95 --P-~~~~~v~~~~~~~~i~ 111 (213)
T PRK06552 95 --P-SFNRETAKICNLYQIP 111 (213)
T ss_pred --C-CCCHHHHHHHHHcCCC
Confidence 3 467788777665 444
No 389
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.25 E-value=0.53 Score=45.86 Aligned_cols=111 Identities=14% Similarity=0.000 Sum_probs=66.1
Q ss_pred ccCCCCCCCC--chhhhhHHH---HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe
Q 015862 218 VNDRTDQYGG--SLENRCRFA---LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV 292 (399)
Q Consensus 218 ~N~R~D~yGG--slenR~r~~---~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~ 292 (399)
.|||-+-+-. -.+|-..+. .+.++++|+..+..+|.|-+. +.+++.+ ..++|+|.|-+.
T Consensus 172 ~~HR~gLsd~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~------------sleea~e----a~~~gaDiI~LD 235 (296)
T PRK09016 172 ANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVE------------NLDELDQ----ALKAGADIIMLD 235 (296)
T ss_pred ccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeC------------CHHHHHH----HHHcCCCEEEeC
Confidence 4566655443 234544444 566777777665445555332 2444333 335789988764
Q ss_pred CCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 293 EPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
..+.. .....++.++. ++.+.++||+|.+.+.++.+.| +|+|++|...-.-|
T Consensus 236 n~s~e------~~~~av~~~~~--~~~ieaSGGI~~~ni~~yA~tG-VD~Is~galthsa~ 287 (296)
T PRK09016 236 NFTTE------QMREAVKRTNG--RALLEVSGNVTLETLREFAETG-VDFISVGALTKHVQ 287 (296)
T ss_pred CCChH------HHHHHHHhhcC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCC
Confidence 32110 01112222222 4568899999999999999998 99999998654433
No 390
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.23 E-value=2.8 Score=40.59 Aligned_cols=84 Identities=17% Similarity=0.043 Sum_probs=51.4
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc--ccc---ccc--CCCchhhHHHHhhcCCcEEEe
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRM--KTR---EEK--SECPHSLLPMRKAFKGTFLVA 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~--~~~---~~~--~~~~~~~~~ir~~~~~pvi~~ 323 (399)
++.+-|.. .+.+++...++.++++|+|+|+++-..- ... ... ....+.++.+|+.+++||++=
T Consensus 91 p~ivsi~g----------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 91 PVIASIAG----------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred cEEEEEec----------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 67776653 2357788999999999999998864321 100 000 011245677888888897642
Q ss_pred --CCC-CHHH-HHHHHHcCCCcEEEe
Q 015862 324 --GGY-DRED-GNKAIAEGRADLVVY 345 (399)
Q Consensus 324 --Ggi-t~~~-a~~~L~~G~~D~V~~ 345 (399)
..+ +..+ ++.+.+.| +|+|.+
T Consensus 161 l~~~~~~~~~~a~~~~~~G-~d~i~~ 185 (296)
T cd04740 161 LTPNVTDIVEIARAAEEAG-ADGLTL 185 (296)
T ss_pred eCCCchhHHHHHHHHHHcC-CCEEEE
Confidence 233 2333 44555566 998765
No 391
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=93.20 E-value=1 Score=40.92 Aligned_cols=133 Identities=23% Similarity=0.294 Sum_probs=89.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCce
Q 015862 173 LRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 173 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v 252 (399)
|=.++-.+.|++++ .||++.+-+|+-- +++ +.++++.||+.- -.+
T Consensus 71 mMV~~Peq~V~~~a-------~agas~~tfH~E~---------------~q~-----------~~~lv~~ir~~G--mk~ 115 (224)
T KOG3111|consen 71 MMVENPEQWVDQMA-------KAGASLFTFHYEA---------------TQK-----------PAELVEKIREKG--MKV 115 (224)
T ss_pred EeecCHHHHHHHHH-------hcCcceEEEEEee---------------ccC-----------HHHHHHHHHHcC--Cee
Confidence 55667778888874 5799999988532 221 578999999852 157
Q ss_pred EEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEE--eCCCcccccccCCCchhhHHHHhhcCCcEE-EeCCCCHH
Q 015862 253 GIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHM--VEPRMKTREEKSECPHSLLPMRKAFKGTFL-VAGGYDRE 329 (399)
Q Consensus 253 ~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v--~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi-~~Ggit~~ 329 (399)
++-|.| +.+.++...++.. +|++-| .+|.++....-.....-++.+|+.++.+.| +-||++++
T Consensus 116 G~alkP---------gT~Ve~~~~~~~~-----~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ 181 (224)
T KOG3111|consen 116 GLALKP---------GTPVEDLEPLAEH-----VDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPS 181 (224)
T ss_pred eEEeCC---------CCcHHHHHHhhcc-----ccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcc
Confidence 887777 3355554444432 455432 244443211111223456778888887766 78999999
Q ss_pred HHHHHHHcCCCcEEEechHHhhCCcH
Q 015862 330 DGNKAIAEGRADLVVYGRLFLANPDL 355 (399)
Q Consensus 330 ~a~~~L~~G~~D~V~~gR~~iadPdl 355 (399)
.+.++.+.| ++++..|.+.+.-+|-
T Consensus 182 ti~~~a~AG-AN~iVaGsavf~a~d~ 206 (224)
T KOG3111|consen 182 TIDKAAEAG-ANMIVAGSAVFGAADP 206 (224)
T ss_pred hHHHHHHcC-CCEEEecceeecCCCH
Confidence 999999999 9999999999876654
No 392
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.18 E-value=0.96 Score=43.76 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=64.8
Q ss_pred cCCCCCCCCc--hhhhhHH--HHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCC
Q 015862 219 NDRTDQYGGS--LENRCRF--ALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEP 294 (399)
Q Consensus 219 N~R~D~yGGs--lenR~r~--~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~ 294 (399)
|||.+-+-+- ..|-..| +.+.++.+|+..+...|.|... +.+++.+ ..++|+|.|-+...
T Consensus 148 ~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVEv~------------~leea~~----a~~agaDiI~LDn~ 211 (278)
T PRK08385 148 PHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVEVE------------SLEDALK----AAKAGADIIMLDNM 211 (278)
T ss_pred ccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEEeC------------CHHHHHH----HHHcCcCEEEECCC
Confidence 5666544332 2333322 4566677777665435666543 2344333 33578998776432
Q ss_pred CcccccccCCCchhhHHHHhhc---CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 295 RMKTREEKSECPHSLLPMRKAF---KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 295 ~~~~~~~~~~~~~~~~~ir~~~---~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
+. ....+..+.+++.. ++.+.++||+|++.++++.+.| +|++++|....
T Consensus 212 ~~------e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~galt~ 263 (278)
T PRK08385 212 TP------EEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLD-VDVISLGALTH 263 (278)
T ss_pred CH------HHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence 10 00112233343322 3558899999999999999998 99999998776
No 393
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.11 E-value=0.21 Score=52.32 Aligned_cols=68 Identities=19% Similarity=0.041 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc-EEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT-FLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
++.+.++.|.++|+|++.+... .. ......+.++++|+.++.+ .+..|.+ |+++++.+++.| +|+|-+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a-~g---~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG-Ad~I~v 311 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSS-EG---YSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG-ADFVKV 311 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCc-cc---ccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC-CCEEEE
Confidence 4667888899999999987511 10 0011246788899998754 5667777 999999999999 999855
No 394
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.11 E-value=1 Score=43.75 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=65.1
Q ss_pred ccCCCCCCCC--chhhhhHHH---HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEe
Q 015862 218 VNDRTDQYGG--SLENRCRFA---LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMV 292 (399)
Q Consensus 218 ~N~R~D~yGG--slenR~r~~---~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~ 292 (399)
.|||-+-+-. -..|-..+. .+.++++|+..+..+|.|-+. +.+++.+. .+.|+|.|-+.
T Consensus 163 ~~HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~------------tl~ea~ea----l~~gaDiI~LD 226 (289)
T PRK07896 163 VNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVD------------SLEQLDEV----LAEGAELVLLD 226 (289)
T ss_pred ccccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcC------------CHHHHHHH----HHcCCCEEEeC
Confidence 4555543332 234444443 566777777665435555432 23433332 36789988764
Q ss_pred CCCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 015862 293 EPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
.- +. ....+.++.+++.. ++.+.++||+|++.+.++.+.| +|++++|.....
T Consensus 227 nm--~~----e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tG-vD~Is~galt~s 279 (289)
T PRK07896 227 NF--PV----WQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETG-VDYLAVGALTHS 279 (289)
T ss_pred CC--CH----HHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcC-CCEEEeChhhcC
Confidence 21 10 00112233333322 3558899999999999999998 999999987763
No 395
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=93.08 E-value=1.2 Score=43.12 Aligned_cols=111 Identities=9% Similarity=0.032 Sum_probs=67.7
Q ss_pred ccCCCCCCCCc--hhhhhHHH------HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEE
Q 015862 218 VNDRTDQYGGS--LENRCRFA------LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYC 289 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~------~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l 289 (399)
.|||-+-+-+- .+|-.++. .+.++++|+..+...|.|-+. +.+++.+ ..++|+|.|
T Consensus 150 ~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~------------tleqa~e----a~~agaDiI 213 (284)
T PRK06096 150 LIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEAD------------TPKEAIA----ALRAQPDVL 213 (284)
T ss_pred cCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECC------------CHHHHHH----HHHcCCCEE
Confidence 56776655543 44555553 467788888776434555442 3444333 346899988
Q ss_pred EEeCCCcccccccCCCchhhHHHHhh-cCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhh
Q 015862 290 HMVEPRMKTREEKSECPHSLLPMRKA-FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 290 ~v~~~~~~~~~~~~~~~~~~~~ir~~-~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
-+..- ++ ....+..+.+++. -++.+-++||+|++.+.++.+.| +|++++|-...+
T Consensus 214 ~LDn~--~~----e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~gal~~a 269 (284)
T PRK06096 214 QLDKF--SP----QQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCG-IRLFITSAPYYA 269 (284)
T ss_pred EECCC--CH----HHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcC-CCEEEECccccC
Confidence 76321 10 0011122223221 23568899999999999999999 999999876544
No 396
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.07 E-value=1.1 Score=42.01 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=37.6
Q ss_pred chhhHHHHhhcC-CcEEEeCCCCH--HHHHHHHHcCCCcEEEechHHhh
Q 015862 306 PHSLLPMRKAFK-GTFLVAGGYDR--EDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 306 ~~~~~~ir~~~~-~pvi~~Ggit~--~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
..+++.++.-++ ++++.+||+++ +++.+.|+.| +..|++|..++.
T Consensus 146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG-a~avg~Gs~L~~ 193 (222)
T PRK07114 146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG-VTCVGMGSKLIP 193 (222)
T ss_pred HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC-CEEEEEChhhcC
Confidence 346667776665 77999999987 8999999998 999999999874
No 397
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.06 E-value=1 Score=46.68 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecC
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSP 258 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~ 258 (399)
+++.| .+.|.+.|.|.+.|-.+. |..+-+...++++|+.=..- .+++-.++
T Consensus 106 vv~~f---v~~a~~~Gidi~Rifd~l------------------------nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 106 IVDKF---ISLSAQNGIDVFRIFDAL------------------------NDPRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred HHHHH---HHHHHHCCCCEEEEcccC------------------------CCHHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 45555 567788999999987644 34677788888888753221 24555555
Q ss_pred CcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC----CCCHHHHHHH
Q 015862 259 FANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG----GYDREDGNKA 334 (399)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~ 334 (399)
..+.+...++++.+++.|+|.|.+.... +. ..+....+.++.+|+..++||-.=. |+.......+
T Consensus 159 ---------~~t~~y~~~~a~~l~~~Gad~I~IkDta-G~-l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laA 227 (468)
T PRK12581 159 ---------VHTLNYYLSLVKELVEMGADSICIKDMA-GI-LTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAA 227 (468)
T ss_pred ---------cCcHHHHHHHHHHHHHcCCCEEEECCCC-CC-cCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHH
Confidence 2356778899999999999998875321 10 1111233567778887777764322 2235667789
Q ss_pred HHcCCCcEE-----EechHHhhCCcH
Q 015862 335 IAEGRADLV-----VYGRLFLANPDL 355 (399)
Q Consensus 335 L~~G~~D~V-----~~gR~~iadPdl 355 (399)
++.| ||.| +||++. .||.+
T Consensus 228 ieAG-ad~vD~ai~g~g~ga-gN~~t 251 (468)
T PRK12581 228 VEAG-ADRIDTALSPFSEGT-SQPAT 251 (468)
T ss_pred HHcC-CCEEEeeccccCCCc-CChhH
Confidence 9998 8866 445543 46644
No 398
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.03 E-value=1.3 Score=44.96 Aligned_cols=106 Identities=8% Similarity=-0.062 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeC--CCccc-cccc---CCCch
Q 015862 234 RFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVE--PRMKT-REEK---SECPH 307 (399)
Q Consensus 234 r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~--~~~~~-~~~~---~~~~~ 307 (399)
+++.+ +..+++..++.+|.+-+.. ..+.++..++++.+++.|+|++++-- |.... .... ....+
T Consensus 99 ~~l~~-i~~~k~~~~~~pvIaSi~~---------~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e 168 (385)
T PLN02495 99 TMLAE-FKQLKEEYPDRILIASIME---------EYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCD 168 (385)
T ss_pred HHHHH-HHHHHhhCCCCcEEEEccC---------CCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHH
Confidence 34455 4667777754477665532 23567889999999999999987632 22110 0000 11223
Q ss_pred ----hhHHHHhhcCCcEEE--eCCC-CHHHHHHHHHcCCCcEEEechHH
Q 015862 308 ----SLLPMRKAFKGTFLV--AGGY-DREDGNKAIAEGRADLVVYGRLF 349 (399)
Q Consensus 308 ----~~~~ir~~~~~pvi~--~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 349 (399)
.++.+|+.+++||++ +-.+ +.....+++.++++|.|.+-=-+
T Consensus 169 ~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 169 LLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 346678888899764 3345 45555554444449988874433
No 399
>PLN02417 dihydrodipicolinate synthase
Probab=92.99 E-value=1.3 Score=42.94 Aligned_cols=127 Identities=16% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc
Q 015862 172 RLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR 251 (399)
Q Consensus 172 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~ 251 (399)
.++.+.+.++++.+ .+.|.|||-+.+..| +|.+ =|.+.|.+++..+++.++.. -+
T Consensus 18 ~iD~~~~~~~i~~l-------~~~Gv~Gi~~~GstG----E~~~-----------ls~~Er~~~~~~~~~~~~~~---~p 72 (280)
T PLN02417 18 RFDLEAYDSLVNMQ-------IENGAEGLIVGGTTG----EGQL-----------MSWDEHIMLIGHTVNCFGGK---IK 72 (280)
T ss_pred CcCHHHHHHHHHHH-------HHcCCCEEEECccCc----chhh-----------CCHHHHHHHHHHHHHHhCCC---Cc
Confidence 35555555555544 668999999887664 2211 25677877666655554321 25
Q ss_pred eEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE------eCC
Q 015862 252 VGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV------AGG 325 (399)
Q Consensus 252 v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~Gg 325 (399)
|.+=++ .....+++++++..++.|+|.+-+..|.+..+. ......+.+.|.++. ||+. +|.
T Consensus 73 vi~gv~----------~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~-~~~i~~~f~~va~~~--pi~lYn~P~~tg~ 139 (280)
T PLN02417 73 VIGNTG----------SNSTREAIHATEQGFAVGMHAALHINPYYGKTS-QEGLIKHFETVLDMG--PTIIYNVPGRTGQ 139 (280)
T ss_pred EEEECC----------CccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC-HHHHHHHHHHHHhhC--CEEEEEChhHhCc
Confidence 554333 234677899999999999999998877543221 111223445555554 7542 232
Q ss_pred -CCHHHHHHHHH
Q 015862 326 -YDREDGNKAIA 336 (399)
Q Consensus 326 -it~~~a~~~L~ 336 (399)
++++..+++.+
T Consensus 140 ~l~~~~l~~l~~ 151 (280)
T PLN02417 140 DIPPEVIFKIAQ 151 (280)
T ss_pred CCCHHHHHHHhc
Confidence 37888877764
No 400
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.92 E-value=0.34 Score=49.31 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=49.2
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
+.+.++.|.++|+|+|.+....- ......+.++.+|+.++ .+|++.+-.|+++|..+++.| +|+|.+|
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g----~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG-aD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHG----HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG-ADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC----CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC-CCEEEEC
Confidence 56788889999999998753321 11123467888999885 555444444999999999998 9998765
No 401
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.87 E-value=1.4 Score=40.52 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
.|.+.++.+.++|.|.|++-...| .+-.+..+..+.++++|+.+. .++.+-+-.+
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~--------------------~~~~~~~~~~~~~~~i~~~~~-~~~~v~l~v~---- 71 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDG--------------------HFVPNLTIGPPVVEAIRKVTK-LPLDVHLMVE---- 71 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccC--------------------CcCCCcCcCHHHHHHHHhcCC-CcEEEEeeeC----
Confidence 467788899999999999854332 111122245889999998775 3333322221
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc-EEEeCCCCHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT-FLVAGGYDREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~~a~~~L~~G~~D~ 342 (399)
+ .+ +.++.+.+.|+|.+.+|..... .....++.+++. +.. .+..+--|..+..+.+... +|+
T Consensus 72 -----d-~~---~~i~~~~~~g~d~v~vh~~~~~------~~~~~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~-~d~ 134 (220)
T PRK05581 72 -----N-PD---RYVPDFAKAGADIITFHVEASE------HIHRLLQLIKSA-GIKAGLVLNPATPLEPLEDVLDL-LDL 134 (220)
T ss_pred -----C-HH---HHHHHHHHcCCCEEEEeeccch------hHHHHHHHHHHc-CCEEEEEECCCCCHHHHHHHHhh-CCE
Confidence 1 12 2334445789999887754211 112234444443 433 3344333444444444444 787
Q ss_pred EEec
Q 015862 343 VVYG 346 (399)
Q Consensus 343 V~~g 346 (399)
|.+.
T Consensus 135 i~~~ 138 (220)
T PRK05581 135 VLLM 138 (220)
T ss_pred EEEE
Confidence 6653
No 402
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.75 E-value=0.39 Score=50.31 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEEe
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 345 (399)
..+.++.|.++|+|+|++....-. ....++.+++||+.++ .+|++ |.+ |+++++.+++.| +|+|-+
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG-ad~I~v 309 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG-ADGLRI 309 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC-CCEEEE
Confidence 367888899999999998643100 1113567889999875 56666 566 999999999999 999954
No 403
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.74 E-value=3.2 Score=39.84 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=75.6
Q ss_pred HHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHH
Q 015862 104 EQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVN 183 (399)
Q Consensus 104 ~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~ 183 (399)
..++..++.++.++++|..+.+++.++.+. + .+
T Consensus 106 ~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~----------------------------------------~-------~~ 138 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYEVFFNLMAISGY----------------------------------------S-------DE 138 (266)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEEEeecCC----------------------------------------C-------HH
Confidence 357888999999999999999988764220 0 13
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCccc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANY 262 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~ 262 (399)
.+.+.++.+.++|.|.|-|--.. |.... +-+.++++++|+.++++ +|++-..- +
T Consensus 139 ~~~~~~~~~~~~g~~~i~l~DT~-------------------G~~~P---~~v~~lv~~l~~~~~~~~~i~~H~Hn--~- 193 (266)
T cd07944 139 ELLELLELVNEIKPDVFYIVDSF-------------------GSMYP---EDIKRIISLLRSNLDKDIKLGFHAHN--N- 193 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEecCC-------------------CCCCH---HHHHHHHHHHHHhcCCCceEEEEeCC--C-
Confidence 46777888889999998866433 43322 34689999999998764 67664442 1
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCccc
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKT 298 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~ 298 (399)
...+..-+...-++|+++++.+-..++.
T Consensus 194 --------~Gla~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 194 --------LQLALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred --------ccHHHHHHHHHHHcCCCEEEEecccCCC
Confidence 1112222222246799999987554443
No 404
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=92.70 E-value=0.18 Score=47.08 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=40.5
Q ss_pred hhHHHHhhcC--CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHH
Q 015862 308 SLLPMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRRFE 360 (399)
Q Consensus 308 ~~~~ir~~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~ 360 (399)
-+..+|+.++ .+++++|||+++.+...-+.+ +|++.+||+....+|-.+.++
T Consensus 152 e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~r-vd~iVVGR~It~A~dP~~aa~ 205 (218)
T PRK13305 152 DLARMKALSDIGLELSITGGITPADLPLFKDIR-VKAFIAGRALAGAANPAQVAA 205 (218)
T ss_pred HHHHHHHHhCCCCcEEEeCCcCccccccccccC-CCEEEECCcccCCCCHHHHHH
Confidence 4566777764 348899999988877666665 899999999999988766554
No 405
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.57 E-value=0.41 Score=47.24 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=48.7
Q ss_pred HHHHHhhhhhC--ceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 275 LYMAESLNKYG--ILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 275 ~~l~~~Le~~G--vd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
.+.+..|.+.| +|+|-+....-. .....+.++.+|+.++.|++..|++ |+++|+.+++.| +|.|-++
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG-ad~I~V~ 165 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG-ADATKVG 165 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC-cCEEEEC
Confidence 45555666777 688876432100 0123567889999999998888888 999999999999 9987654
No 406
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=92.54 E-value=0.34 Score=46.96 Aligned_cols=98 Identities=16% Similarity=0.061 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF 316 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~ 316 (399)
-+-|+.+|.... -||.+|=-. +.++ +....++|++-|-|+...-.+....+...+.+.++-+++
T Consensus 212 W~Di~wLr~~T~-LPIvvKGil-----------t~eD----A~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV 275 (363)
T KOG0538|consen 212 WKDIKWLRSITK-LPIVVKGVL-----------TGED----ARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAV 275 (363)
T ss_pred hhhhHHHHhcCc-CCeEEEeec-----------ccHH----HHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHh
Confidence 445666776652 267665322 2233 233457899988887543333334455567778888887
Q ss_pred C--CcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 317 K--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 317 ~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
. +||+.-||+ +-.|.-++|+-| +-.|.+|||++-
T Consensus 276 ~~ri~V~lDGGVR~G~DVlKALALG-Ak~VfiGRP~v~ 312 (363)
T KOG0538|consen 276 EGRIPVFLDGGVRRGTDVLKALALG-AKGVFIGRPIVW 312 (363)
T ss_pred cCceEEEEecCcccchHHHHHHhcc-cceEEecCchhe
Confidence 4 889999999 899999999999 999999999875
No 407
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.50 E-value=1.5 Score=44.24 Aligned_cols=86 Identities=19% Similarity=0.104 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+.|++.+..+...|.|.|.... .|-+|-++ +++.|.+.+.+.++++.+++|.. ++.+=++.
T Consensus 141 ~~~a~~~~~~~~gGvD~IKdDe---~l~~~~~~------------p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita--- 202 (364)
T cd08210 141 AELAELAYAFALGGIDIIKDDH---GLADQPFA------------PFEERVKACQEAVAEANAETGGRTLYAPNVTG--- 202 (364)
T ss_pred HHHHHHHHHHHhcCCCeeecCc---cccCccCC------------CHHHHHHHHHHHHHHHHhhcCCcceEEEecCC---
Confidence 3467777777889999997442 23344443 46899999999999999999875 34443332
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEP 294 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~ 294 (399)
+.+++.+.++..+++|.+.+-+.-.
T Consensus 203 --------~~~em~~ra~~a~~~Ga~~vMv~~~ 227 (364)
T cd08210 203 --------PPTQLLERARFAKEAGAGGVLIAPG 227 (364)
T ss_pred --------CHHHHHHHHHHHHHcCCCEEEeecc
Confidence 2447888899999999888876543
No 408
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.47 E-value=0.58 Score=43.26 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc-EEEeCCC-CHHHHHHHHHcCCCcEEEech
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT-FLVAGGY-DREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggi-t~~~a~~~L~~G~~D~V~~gR 347 (399)
+.+++.++++.+.+.|+..++++..+ +...+.++.+++.++.+ +++.|.+ +.++++.+++.| +||+..+-
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG-A~fivsp~ 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAG-GRLIVTPN 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC-CCEEECCC
Confidence 46778999999999999999986432 11234677788888765 7788888 999999999999 99999853
Q ss_pred HHhhCCcHHHHHHhC
Q 015862 348 LFLANPDLPRRFELN 362 (399)
Q Consensus 348 ~~iadPdl~~k~~~g 362 (399)
.|+++.+..+..
T Consensus 92 ---~~~~v~~~~~~~ 103 (206)
T PRK09140 92 ---TDPEVIRRAVAL 103 (206)
T ss_pred ---CCHHHHHHHHHC
Confidence 567777766643
No 409
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=92.40 E-value=1.6 Score=40.89 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~ 264 (399)
.+-|..|.++|+|.|++.= -.....|. ...++|++|++.++.. +|+.-+.-. .
T Consensus 10 ~~EA~~a~~~gaDiID~K~---------------P~~GaLGA-------~~~~vi~~i~~~~~~~~pvSAtiGDl---p- 63 (235)
T PF04476_consen 10 VEEAEEALAGGADIIDLKN---------------PAEGALGA-------LFPWVIREIVAAVPGRKPVSATIGDL---P- 63 (235)
T ss_pred HHHHHHHHhCCCCEEEccC---------------CCCCCCCC-------CCHHHHHHHHHHcCCCCceEEEecCC---C-
Confidence 5668889999999999873 22333443 3478889999998755 677665421 1
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhh----HHHHhhcC-CcEEEeCC--------CCHHHH
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSL----LPMRKAFK-GTFLVAGG--------YDREDG 331 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~----~~ir~~~~-~pvi~~Gg--------it~~~a 331 (399)
..+ ......+......|+||+.+--..... .....+.+ +.+|+.-. ..|++++- ++|.+.
T Consensus 64 ---~~p-~~~~~aa~~~a~~GvdyvKvGl~g~~~---~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l 136 (235)
T PF04476_consen 64 ---MKP-GTASLAALGAAATGVDYVKVGLFGCKD---YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDL 136 (235)
T ss_pred ---CCc-hHHHHHHHHHHhcCCCEEEEecCCCCC---HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHH
Confidence 111 222333444556799999974221111 00111222 23333222 33555542 234455
Q ss_pred HHHHHcCCCcEEEech
Q 015862 332 NKAIAEGRADLVVYGR 347 (399)
Q Consensus 332 ~~~L~~G~~D~V~~gR 347 (399)
-+.+.+-.+|.||+-.
T Consensus 137 ~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDT 152 (235)
T ss_pred HHHHHHcCCCEEEEec
Confidence 5555544499999843
No 410
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.39 E-value=0.68 Score=41.99 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechH
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 348 (399)
+.+++..+++.+.+.|++.+.+...+ ....+.++.+++.++...++.|.+ |.++++.+++.| +|+|.++-
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~G-a~~i~~p~- 84 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAG-AQFIVSPG- 84 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEcCC-
Confidence 45678899999999999999986431 113347778888887556677777 899999999998 99998753
Q ss_pred HhhCCcHHHHHHh
Q 015862 349 FLANPDLPRRFEL 361 (399)
Q Consensus 349 ~iadPdl~~k~~~ 361 (399)
.||++.+..+.
T Consensus 85 --~~~~~~~~~~~ 95 (190)
T cd00452 85 --LDPEVVKAANR 95 (190)
T ss_pred --CCHHHHHHHHH
Confidence 46777777665
No 411
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.19 E-value=5 Score=38.34 Aligned_cols=147 Identities=18% Similarity=0.123 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++|||+|-+ |-+ +....+- ..|--.=++ .-.+..+++|++.++...|.+.+ ++ .
T Consensus 22 ~~sA~l~e~aG~d~i~v--Gds-~~~~~lG-----~pDt~~vtl----~em~~~~~~V~r~~~~p~viaD~-~f---g-- 83 (254)
T cd06557 22 YPTAKLADEAGVDVILV--GDS-LGMVVLG-----YDSTLPVTL----DEMIYHTRAVRRGAPRALVVADM-PF---G-- 83 (254)
T ss_pred HHHHHHHHHcCCCEEEE--CHH-HHHHHcC-----CCCCCCcCH----HHHHHHHHHHHhcCCCCeEEEeC-CC---C--
Confidence 66788999999999963 211 1111110 011101122 34466777777776532266655 21 1
Q ss_pred CCCChHHHHHHH-HHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEE-----------EeCCC-----
Q 015862 266 GDSNPEALGLYM-AESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFL-----------VAGGY----- 326 (399)
Q Consensus 266 ~~~~~~~~~~~l-~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi-----------~~Ggi----- 326 (399)
+..++.+++.+- .+.++++|++.+++..+ .+.+..|+..+ .+||+ ..|++
T Consensus 84 ~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-----------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~gr 152 (254)
T cd06557 84 SYQTSPEQALRNAARLMKEAGADAVKLEGG-----------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGK 152 (254)
T ss_pred cccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccC
Confidence 123445666555 44556699999998543 13445555543 57776 44543
Q ss_pred CH-------HHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCCC
Q 015862 327 DR-------EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPL 365 (399)
Q Consensus 327 t~-------~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~~ 365 (399)
|. +++..+.+.| ||+|.+ ..+. .++.+++.+..++
T Consensus 153 t~~~a~~~i~ra~a~~~AG-A~~i~l--E~v~-~~~~~~i~~~v~i 194 (254)
T cd06557 153 TEEEAERLLEDALALEEAG-AFALVL--ECVP-AELAKEITEALSI 194 (254)
T ss_pred CHHHHHHHHHHHHHHHHCC-CCEEEE--cCCC-HHHHHHHHHhCCC
Confidence 33 3344555666 999888 3443 3678888777654
No 412
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.13 E-value=0.4 Score=49.99 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
..++++.|.+.|++.|.+....-. .....+.++.||+.++...+..|++ |.+.|+.+++.| +|+|.+|
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG-ad~v~vg 296 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG-ADIVKVG 296 (479)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC-CCEEEEC
Confidence 467888898999999876432111 1124567899999986555566777 999999999999 9998733
No 413
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.10 E-value=1.3 Score=42.43 Aligned_cols=134 Identities=20% Similarity=0.274 Sum_probs=78.8
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGD 267 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~ 267 (399)
...+|.++|.|.|.|..+- |+..+ ...+|-+.+.-...+.++++..|+. | +.|+++..+-+
T Consensus 76 di~~a~~~g~~~i~i~~~~--------S~~~~--~~~~~~~~~e~~~~~~~~i~~a~~~-G---~~v~~~~eda~----- 136 (262)
T cd07948 76 DARIAVETGVDGVDLVFGT--------SPFLR--EASHGKSITEIIESAVEVIEFVKSK-G---IEVRFSSEDSF----- 136 (262)
T ss_pred HHHHHHHcCcCEEEEEEec--------CHHHH--HHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEEEeeC-----
Confidence 3566778999999886543 22212 2233445555555566666666654 2 34555542211
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC----CCCHHHHHHHHHcCCCcEE
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG----GYDREDGNKAIAEGRADLV 343 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~L~~G~~D~V 343 (399)
..+.+...++++.+.+.|++-+.+.... +. ..+......++.+|+.+++|+-.=. |+....+..+++.| +|.|
T Consensus 137 r~~~~~l~~~~~~~~~~g~~~i~l~Dt~-G~-~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG-~~~v 213 (262)
T cd07948 137 RSDLVDLLRVYRAVDKLGVNRVGIADTV-GI-ATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAG-ATHI 213 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcC-CC-CCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhC-CCEE
Confidence 2356778889999999999988764321 11 1111233567788888886653222 12356677889998 7765
No 414
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.07 E-value=0.68 Score=43.31 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhh----cCCcEEEeCCC-CHHHHHHHHHcCCCcEEE
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKA----FKGTFLVAGGY-DREDGNKAIAEGRADLVV 344 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~----~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 344 (399)
+.+++..+++.|.+.|+..++|+-.+ +...+.++.+++. .+.-+++.|-+ |+++++++++.| ++|+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~t-------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aG-A~FiV 96 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRG-------DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLG-ANFIV 96 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcC-CCEEE
Confidence 46789999999999999999987432 1123445555433 33347788888 999999999999 99887
Q ss_pred echHHhhCCcHHHHHHh-CCC
Q 015862 345 YGRLFLANPDLPRRFEL-NAP 364 (399)
Q Consensus 345 ~gR~~iadPdl~~k~~~-g~~ 364 (399)
. | -.||++.+..++ |.+
T Consensus 97 s--P-~~~~~v~~~~~~~~i~ 114 (222)
T PRK07114 97 T--P-LFNPDIAKVCNRRKVP 114 (222)
T ss_pred C--C-CCCHHHHHHHHHcCCC
Confidence 6 3 378888887775 444
No 415
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=92.05 E-value=6.4 Score=37.67 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEE
Q 015862 175 TDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGI 254 (399)
Q Consensus 175 ~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~v 254 (399)
...+++|++.=.+-|...+++|+|||-|-=-+ =-|... +. + -.-...+.-|+.+||+.++ -|++|
T Consensus 20 ~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~-------d~P~~~-~~---~---p~tva~m~~i~~~v~~~~~-~p~Gv 84 (257)
T TIGR00259 20 DDNLNAVIDKAWKDAMALEEGGVDAVMFENFF-------DAPFLK-EV---D---PETVAAMAVIAGQLKSDVS-IPLGI 84 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCC-------CCCCcC-CC---C---HHHHHHHHHHHHHHHHhcC-CCeee
Confidence 34688899999999999999999999874111 113221 11 1 1234566778889999885 36777
Q ss_pred EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeC--CCc-ccccccCCCchhhHHHHhhcCC--cEEE-------
Q 015862 255 RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVE--PRM-KTREEKSECPHSLLPMRKAFKG--TFLV------- 322 (399)
Q Consensus 255 rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~--~~~-~~~~~~~~~~~~~~~ir~~~~~--pvi~------- 322 (399)
-+=.+ +...++.+|. ..|.+||-+-. +.+ .....-.....-+-+.|+.++. .|++
T Consensus 85 nvL~n----------d~~aal~iA~---a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~ 151 (257)
T TIGR00259 85 NVLRN----------DAVAALAIAM---AVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHA 151 (257)
T ss_pred eeecC----------CCHHHHHHHH---HhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeeccc
Confidence 54322 1122445553 56899987521 111 1000000112223345555442 2322
Q ss_pred --eCCCCH-HHHHHHHHcCCCcEEEec---hHHhhCCcHHHHHHh
Q 015862 323 --AGGYDR-EDGNKAIAEGRADLVVYG---RLFLANPDLPRRFEL 361 (399)
Q Consensus 323 --~Ggit~-~~a~~~L~~G~~D~V~~g---R~~iadPdl~~k~~~ 361 (399)
.+..+. +.++.++..+.+|.|.+. .+.-.|+++..++++
T Consensus 152 ~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~ 196 (257)
T TIGR00259 152 VHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKE 196 (257)
T ss_pred CcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHh
Confidence 112244 457788888889988764 445567777888875
No 416
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.03 E-value=3.7 Score=40.86 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHH
Q 015862 107 EAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFR 186 (399)
Q Consensus 107 ~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~ 186 (399)
+..++.++.+++.|..+.++|..+++. + .+.++
T Consensus 115 ~~~~~~i~~ak~~G~~v~~~l~~a~~~-----------------------------------~------------~e~l~ 147 (337)
T PRK08195 115 DVSEQHIGLARELGMDTVGFLMMSHMA-----------------------------------P------------PEKLA 147 (337)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccCC-----------------------------------C------------HHHHH
Confidence 457888999999998888888643210 0 14567
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMES 265 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~ 265 (399)
+.|+.+.++|.|.|-|--.. |.... .-+.++++++|+.++++ +|++-..- ++
T Consensus 148 ~~a~~~~~~Ga~~i~i~DT~-------------------G~~~P---~~v~~~v~~l~~~l~~~i~ig~H~Hn--nl--- 200 (337)
T PRK08195 148 EQAKLMESYGAQCVYVVDSA-------------------GALLP---EDVRDRVRALRAALKPDTQVGFHGHN--NL--- 200 (337)
T ss_pred HHHHHHHhCCCCEEEeCCCC-------------------CCCCH---HHHHHHHHHHHHhcCCCCeEEEEeCC--Cc---
Confidence 88899999999998866444 43333 34689999999999755 56665442 11
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCc
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRM 296 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~ 296 (399)
+. +..-+....++|+++|+.+-..+
T Consensus 201 --Gl----a~ANslaAi~aGa~~iD~Sl~Gl 225 (337)
T PRK08195 201 --GL----GVANSLAAVEAGATRIDGSLAGL 225 (337)
T ss_pred --ch----HHHHHHHHHHhCCCEEEecChhh
Confidence 11 11122222357999998765433
No 417
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=91.99 E-value=4.5 Score=38.69 Aligned_cols=77 Identities=25% Similarity=0.179 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-C--H----HHHHHHHHcCCCcEE
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-D--R----EDGNKAIAEGRADLV 343 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t--~----~~a~~~L~~G~~D~V 343 (399)
.+...+.++.-.+.|+|+|-+-- +...+..+++-+..++||+..||= + . +...++++.| +-.+
T Consensus 165 ~~~v~~aaRlaaelGADIiK~~y---------tg~~e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aG-a~G~ 234 (265)
T COG1830 165 ADLVGYAARLAAELGADIIKTKY---------TGDPESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAG-AMGV 234 (265)
T ss_pred HHHHHHHHHHHHHhcCCeEeecC---------CCChHHHHHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHcc-Ccch
Confidence 34445555566788999987521 112355566666778998888875 3 3 2345788888 8899
Q ss_pred EechHHhhCCcHHH
Q 015862 344 VYGRLFLANPDLPR 357 (399)
Q Consensus 344 ~~gR~~iadPdl~~ 357 (399)
.+||=++..|+-..
T Consensus 235 ~~GRNifQ~~~p~~ 248 (265)
T COG1830 235 AVGRNIFQHEDPEA 248 (265)
T ss_pred hhhhhhhccCChHH
Confidence 99999988775433
No 418
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.98 E-value=1.1 Score=44.26 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.3
Q ss_pred HHHHHhhhh--hCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 015862 275 LYMAESLNK--YGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 343 (399)
Q Consensus 275 ~~l~~~Le~--~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 343 (399)
.+.++.|.+ .|+|+|.+....-. .....+.++.||+.++...+..|++ |++.++.++..| +|.|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG-AD~v 176 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSG-ADIV 176 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC-CCEE
Confidence 445555655 58999887532110 0123567889999987545566777 999999999998 9986
No 419
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=91.97 E-value=11 Score=36.13 Aligned_cols=85 Identities=19% Similarity=0.097 Sum_probs=58.4
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc---ccccccCCCchhhHHHHhhcCCcEEEe----
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRM---KTREEKSECPHSLLPMRKAFKGTFLVA---- 323 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~---~~~~~~~~~~~~~~~ir~~~~~pvi~~---- 323 (399)
||.+|=+. ..++++++..++.+...|-.-+-+.++.. .......-....+..+|+.+..|||+.
T Consensus 154 PvLLKRg~---------~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivDpSH~ 224 (286)
T COG2876 154 PVLLKRGL---------SATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVDPSHA 224 (286)
T ss_pred CeEEecCc---------cccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEECCCCc
Confidence 78776554 56899999999999888865555555432 211112223456778999999999864
Q ss_pred -CCCC--HHHHHHHHHcCCCcEEEe
Q 015862 324 -GGYD--REDGNKAIAEGRADLVVY 345 (399)
Q Consensus 324 -Ggit--~~~a~~~L~~G~~D~V~~ 345 (399)
|+-+ .-.|..+++.| +|++++
T Consensus 225 ~Grr~lv~pla~AA~AaG-Adglmi 248 (286)
T COG2876 225 TGRRDLVEPLAKAAIAAG-ADGLMI 248 (286)
T ss_pred ccchhhHHHHHHHHHhcc-CCeeEE
Confidence 3222 45678899998 999987
No 420
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=91.92 E-value=15 Score=36.93 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeC-CC--cccccccCCCchhhHHHH
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVE-PR--MKTREEKSECPHSLLPMR 313 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~-~~--~~~~~~~~~~~~~~~~ir 313 (399)
.++++++.+. | .||.++-+. ..+.++....++.+.+.|..-|-+.. +. |..+.....++..+..+|
T Consensus 215 ~~LL~~~a~~-g-kPVilk~G~---------~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk 283 (360)
T PRK12595 215 FELLKAAGRV-N-KPVLLKRGL---------SATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILK 283 (360)
T ss_pred HHHHHHHHcc-C-CcEEEeCCC---------CCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHH
Confidence 3566666543 3 278886653 23577788888888888864343333 32 221112223556678899
Q ss_pred hhcCCcEEEeCCC-------CHHHHHHHHHcCCCcEEEechHHhhCCcHH
Q 015862 314 KAFKGTFLVAGGY-------DREDGNKAIAEGRADLVVYGRLFLANPDLP 356 (399)
Q Consensus 314 ~~~~~pvi~~Ggi-------t~~~a~~~L~~G~~D~V~~gR~~iadPdl~ 356 (399)
+.++.||+..-.- -+..+..++.-| +|++++-+-+ ||+..
T Consensus 284 ~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~G-Adg~~iE~H~--dp~~a 330 (360)
T PRK12595 284 QETHLPVMVDVTHSTGRRDLLLPTAKAALAIG-ADGVMAEVHP--DPAVA 330 (360)
T ss_pred HHhCCCEEEeCCCCCcchhhHHHHHHHHHHcC-CCeEEEEecC--CCCCC
Confidence 9899998883222 134667788998 9999998877 77653
No 421
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.74 E-value=13 Score=35.77 Aligned_cols=102 Identities=16% Similarity=0.069 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc--ccccc-cCCCchhhHHHH
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRM--KTREE-KSECPHSLLPMR 313 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~--~~~~~-~~~~~~~~~~ir 313 (399)
.++++++ ...| .||.++-+. ..++++....++.+...|-.-+++..+.. ...|. ...++..+..+|
T Consensus 124 ~~LL~~~-a~~g-kPV~lk~G~---------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk 192 (266)
T PRK13398 124 FELLKEV-GKTK-KPILLKRGM---------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIK 192 (266)
T ss_pred HHHHHHH-hcCC-CcEEEeCCC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 4455555 2333 288887654 22567778888888888865555544322 11111 111334556678
Q ss_pred hhcCCcEEEe-C-CCC-----HHHHHHHHHcCCCcEEEechHHh
Q 015862 314 KAFKGTFLVA-G-GYD-----REDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 314 ~~~~~pvi~~-G-git-----~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
+.++.||+.. . ... +..+..++..| +|.+++-+-+-
T Consensus 193 ~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~G-a~Gl~iE~H~~ 235 (266)
T PRK13398 193 ELSHLPIIVDPSHATGRRELVIPMAKAAIAAG-ADGLMIEVHPE 235 (266)
T ss_pred hccCCCEEEeCCCcccchhhHHHHHHHHHHcC-CCEEEEeccCC
Confidence 7788998872 2 223 67788899999 99888765443
No 422
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.63 E-value=0.55 Score=48.62 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=49.9
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
..+.++.|.++|+|.|++....-. .....+.++.||+.+ ++||++.+..|++++..+++.| +|+|-+|
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG-ad~i~vg 293 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG-ADGLRVG 293 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC-CCEEEEC
Confidence 455677888899999998643211 112456788899886 5888885555999999999999 9998544
No 423
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.55 E-value=5.6 Score=37.61 Aligned_cols=135 Identities=17% Similarity=0.173 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-C-ceEEEecCCccc
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA-D-RVGIRLSPFANY 262 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~-~-~v~vrls~~~~~ 262 (399)
..+..++..++|+-||.|--. |...-+..+- -..-..+-|++++++..+ + .|..|.-..-.
T Consensus 87 v~~tv~~~~~aG~agi~IEDq---------------~~~~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~- 149 (238)
T PF13714_consen 87 VARTVRELERAGAAGINIEDQ---------------RCGHGGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLR- 149 (238)
T ss_dssp HHHHHHHHHHCT-SEEEEESB---------------STTTSTT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH-
T ss_pred HHHHHHHHHHcCCcEEEeecc---------------ccCCCCCcee-CHHHHHHHHHHHHHhccCCeEEEEEecccccc-
Confidence 466667778999999998844 1111122333 233455566666666653 3 46778754200
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcE
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADL 342 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~ 342 (399)
.....+++++-++...++|+|.+-+... ...+.++++.+.++.|+.++-.-..-..+++-+-| +.+
T Consensus 150 ----~~~~~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lG-v~~ 215 (238)
T PF13714_consen 150 ----AEEGLDEAIERAKAYAEAGADMIFIPGL---------QSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELG-VKR 215 (238)
T ss_dssp ----HHHHHHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTT-ESE
T ss_pred ----CCCCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCC-CcE
Confidence 1235788999999999999999887433 12345777888889997666532124556666667 889
Q ss_pred EEechHHh
Q 015862 343 VVYGRLFL 350 (399)
Q Consensus 343 V~~gR~~i 350 (399)
|.++-.++
T Consensus 216 v~~~~~~~ 223 (238)
T PF13714_consen 216 VSYGNSLL 223 (238)
T ss_dssp EEETSHHH
T ss_pred EEEcHHHH
Confidence 98876554
No 424
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=91.54 E-value=7.3 Score=38.33 Aligned_cols=148 Identities=13% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCccc-CCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANY-MES 265 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~-~~~ 265 (399)
.+++.++.|.|+|++-.= -|.|+=-.--+.+..|+.+|.+.+++. + +..+-+-.++.. .+.
T Consensus 111 s~~rike~GadavK~Lly--------------y~pD~~~ein~~k~a~vervg~ec~a~---dipf~lE~ltYd~~~~~~ 173 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLY--------------YDVDDAEEINIQKKAYIERIGSECVAE---DIPFFLEVLTYDDNIPDN 173 (325)
T ss_pred cHHHHHHhCCCeEEEEEE--------------eCCCCChHHHHHHHHHHHHHHHHHHHC---CCCeEEEEeccCCCCCCC
Confidence 578889999999997632 244421111112233555555555443 3 444433222111 110
Q ss_pred CC-CC---hHHHHHHHHHhhhh--hCceEEEEeCCCcccccccC-------CCchhhHHHHh---hcCCc-EEEeCCCCH
Q 015862 266 GD-SN---PEALGLYMAESLNK--YGILYCHMVEPRMKTREEKS-------ECPHSLLPMRK---AFKGT-FLVAGGYDR 328 (399)
Q Consensus 266 ~~-~~---~~~~~~~l~~~Le~--~Gvd~l~v~~~~~~~~~~~~-------~~~~~~~~ir~---~~~~p-vi~~Ggit~ 328 (399)
+. .. -.+..++.++.+.+ .|+|.+-|--|......... ...+..+.+++ +.++| |+.+.|.+.
T Consensus 174 ~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV~~ 253 (325)
T TIGR01232 174 GSVEFAKVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVSA 253 (325)
T ss_pred CcHHHHHhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCCH
Confidence 00 00 12233455666766 79999887654321111010 11234444554 56788 788889976
Q ss_pred HHHHHHH----HcCCC--cEEEechHHhhCC
Q 015862 329 EDGNKAI----AEGRA--DLVVYGRLFLANP 353 (399)
Q Consensus 329 ~~a~~~L----~~G~~--D~V~~gR~~iadP 353 (399)
+...+.| +.| + -.|..||+.-.|+
T Consensus 254 ~~F~~~l~~A~~aG-a~fsGvL~GRAtW~~~ 283 (325)
T TIGR01232 254 ELFQETLKFAHEAG-AKFNGVLCGRATWSGA 283 (325)
T ss_pred HHHHHHHHHHHHcC-CCcceEEeehhhhHhh
Confidence 6655444 455 5 6999999998776
No 425
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.52 E-value=6.3 Score=37.62 Aligned_cols=112 Identities=15% Similarity=0.046 Sum_probs=70.5
Q ss_pred HhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHH
Q 015862 106 VEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDF 185 (399)
Q Consensus 106 i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f 185 (399)
++..++.++.+++.|..+.+++..+++. |. +.+
T Consensus 111 ~~~~~~~i~~ak~~G~~v~~~~~~~~~~----------------------------------------~~-------~~~ 143 (263)
T cd07943 111 ADVSEQHIGAARKLGMDVVGFLMMSHMA----------------------------------------SP-------EEL 143 (263)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCC----------------------------------------CH-------HHH
Confidence 4567889999999998888888643211 11 346
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++.+.++|.|.|-|- |-+|.... .-+.++++.+|+.++..+|++-..- ++
T Consensus 144 ~~~~~~~~~~G~d~i~l~-------------------DT~G~~~P---~~v~~lv~~l~~~~~~~~l~~H~Hn--~~--- 196 (263)
T cd07943 144 AEQAKLMESYGADCVYVT-------------------DSAGAMLP---DDVRERVRALREALDPTPVGFHGHN--NL--- 196 (263)
T ss_pred HHHHHHHHHcCCCEEEEc-------------------CCCCCcCH---HHHHHHHHHHHHhCCCceEEEEecC--Cc---
Confidence 777788889999998765 33354333 3458999999999864256664442 11
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcc
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMK 297 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~ 297 (399)
+.... -+-..-++|+++++.+-..++
T Consensus 197 --GlA~A----N~laAi~aGa~~vd~s~~GlG 222 (263)
T cd07943 197 --GLAVA----NSLAAVEAGATRIDGSLAGLG 222 (263)
T ss_pred --chHHH----HHHHHHHhCCCEEEeeccccc
Confidence 11111 111223579999998755444
No 426
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.50 E-value=2.2 Score=44.16 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
++.|++ +|.++|.|.|.|-.+.. .. .| +.+.++.+|+. |. .+.+-++...
T Consensus 98 v~~~v~---~A~~~Gvd~irif~~ln--------d~------------~n----~~~~v~~ak~~-G~-~v~~~i~~t~- 147 (448)
T PRK12331 98 VESFVQ---KSVENGIDIIRIFDALN--------DV------------RN----LETAVKATKKA-GG-HAQVAISYTT- 147 (448)
T ss_pred HHHHHH---HHHHCCCCEEEEEEecC--------cH------------HH----HHHHHHHHHHc-CC-eEEEEEEeec-
Confidence 444444 45678999998876541 11 12 55677777765 32 2222222211
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC----CCCHHHHHHHHHc
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG----GYDREDGNKAIAE 337 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~L~~ 337 (399)
....+.+...++++.++++|+|.|.+.... + ...+......++.+|+.+++||-.=. |+....+..+++.
T Consensus 148 ----~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~-G-~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAiea 221 (448)
T PRK12331 148 ----SPVHTIDYFVKLAKEMQEMGADSICIKDMA-G-ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEA 221 (448)
T ss_pred ----CCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-C-CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHc
Confidence 012356778899999999999998875321 1 01111233577888998888764322 3346777889999
Q ss_pred CCCcEEE-----echHHhhCCcH
Q 015862 338 GRADLVV-----YGRLFLANPDL 355 (399)
Q Consensus 338 G~~D~V~-----~gR~~iadPdl 355 (399)
| ||.|- ||++ ..||.+
T Consensus 222 G-ad~vD~sv~glg~g-aGN~~t 242 (448)
T PRK12331 222 G-ADIIDTAISPFAGG-TSQPAT 242 (448)
T ss_pred C-CCEEEeeccccCCC-cCCHhH
Confidence 9 88764 4554 556643
No 427
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=91.48 E-value=0.14 Score=45.96 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=46.2
Q ss_pred HHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEechHHh
Q 015862 277 MAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 277 l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
-.+.+++...|++++-.+. .+..++++++.+++|+|++|=+ |.++++++|+.| ++.|+-+..-+
T Consensus 109 ~~~~i~~~~PD~vEilPg~---------~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aG-a~aVSTS~~~L 173 (175)
T PF04309_consen 109 GIKQIEQSKPDAVEILPGV---------MPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAG-ADAVSTSNKEL 173 (175)
T ss_dssp HHHHHHHHT-SEEEEESCC---------HHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTT-CEEEEE--HHH
T ss_pred HHHHHhhcCCCEEEEchHH---------HHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcC-CEEEEcCChHh
Confidence 4555677889999985431 2346777888899999999888 899999999999 99998776543
No 428
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.38 E-value=4.4 Score=36.92 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 266 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~ 266 (399)
+.+..+ +.|+|.|||-.. .+.++..++|+.+|+..+...+.+.+...+
T Consensus 16 ~~~~~l-~~~v~~iev~~~-------------------------l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d------ 63 (206)
T TIGR03128 16 ELAEKV-ADYVDIIEIGTP-------------------------LIKNEGIEAVKEMKEAFPDRKVLADLKTMD------ 63 (206)
T ss_pred HHHHHc-ccCeeEEEeCCH-------------------------HHHHhCHHHHHHHHHHCCCCEEEEEEeecc------
Confidence 344445 689999997311 123455899999999865434444432210
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEe-CCC-C-HHHHHHHHHcCCCcEE
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVA-GGY-D-REDGNKAIAEGRADLV 343 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~-Ggi-t-~~~a~~~L~~G~~D~V 343 (399)
. . ...++.+.++|+|++.+|.-.- .....+.++.+++ .+++++.. -+. | .++++.+++.| +|+|
T Consensus 64 -~---~--~~~~~~~~~~Gad~i~vh~~~~-----~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g-~d~v 130 (206)
T TIGR03128 64 -A---G--EYEAEQAFAAGADIVTVLGVAD-----DATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELG-ADYI 130 (206)
T ss_pred -c---h--HHHHHHHHHcCCCEEEEeccCC-----HHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcC-CCEE
Confidence 1 1 1246667789999998774310 0001234555555 57776654 233 4 57888888876 9999
Q ss_pred EechH
Q 015862 344 VYGRL 348 (399)
Q Consensus 344 ~~gR~ 348 (399)
.+..+
T Consensus 131 ~~~pg 135 (206)
T TIGR03128 131 GVHTG 135 (206)
T ss_pred EEcCC
Confidence 98543
No 429
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.38 E-value=5.5 Score=38.30 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
+-.|+.+.++|||+|-+ +.. +....+- ..|--.=++ .-.++.+++|++.++..+|.+.+ ++.
T Consensus 25 ~~sArl~e~aG~d~i~v-Gds--~~~~~lG-----~~Dt~~vtl----~em~~h~~~V~r~~~~p~vvaD~-pfg----- 86 (264)
T PRK00311 25 YPFAKLFDEAGVDVILV-GDS--LGMVVLG-----YDSTLPVTL----DDMIYHTKAVARGAPRALVVADM-PFG----- 86 (264)
T ss_pred HHHHHHHHHcCCCEEEE-CHH--HHHHHcC-----CCCCCCcCH----HHHHHHHHHHHhcCCCCcEEEeC-CCC-----
Confidence 66788999999999964 211 1111110 011001122 23466677777766533466666 221
Q ss_pred CCCChHHHHHH-HHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEE-----------EeCCC-----
Q 015862 266 GDSNPEALGLY-MAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFL-----------VAGGY----- 326 (399)
Q Consensus 266 ~~~~~~~~~~~-l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi-----------~~Ggi----- 326 (399)
+...+.+++.+ ..+.++++|++.+++..+ .+.+..|+..+ ++||+ ..|++
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-----------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~gr 155 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEGG-----------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGR 155 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecC
Confidence 12234555444 455666699999998543 13344454443 67876 33433
Q ss_pred CH-------HHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhCCCC
Q 015862 327 DR-------EDGNKAIAEGRADLVVYGRLFLANPDLPRRFELNAPL 365 (399)
Q Consensus 327 t~-------~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g~~~ 365 (399)
|. ++|..+.+.| ||+|.+ ..+ ..++.+++.+..++
T Consensus 156 t~~~a~~~i~ra~a~~eAG-A~~i~l--E~v-~~~~~~~i~~~l~i 197 (264)
T PRK00311 156 DEEAAEKLLEDAKALEEAG-AFALVL--ECV-PAELAKEITEALSI 197 (264)
T ss_pred CHHHHHHHHHHHHHHHHCC-CCEEEE--cCC-CHHHHHHHHHhCCC
Confidence 22 2344455566 999888 344 33788888777653
No 430
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.35 E-value=2.6 Score=42.07 Aligned_cols=41 Identities=24% Similarity=0.155 Sum_probs=34.2
Q ss_pred CchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 305 CPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 305 ~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
.++.++++++.+++||++-|-.++++|+.+.+.| +|.|.+.
T Consensus 201 ~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~vs 241 (344)
T cd02922 201 TWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG-VDGIVLS 241 (344)
T ss_pred CHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcC-CCEEEEE
Confidence 3566888999999999888666899999999998 9988753
No 431
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.29 E-value=7.3 Score=37.27 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=71.9
Q ss_pred CHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHH
Q 015862 102 TKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQI 181 (399)
Q Consensus 102 ~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~i 181 (399)
.++.++..++.++.+++.|..+.+++.+.++. +
T Consensus 109 ~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----------------------------------------~------- 141 (268)
T cd07940 109 REEVLERAVEAVEYAKSHGLDVEFSAEDATRT----------------------------------------D------- 141 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEeeecCCCC----------------------------------------C-------
Confidence 35678889999999999998776554332210 0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC--CceEEEecCC
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA--DRVGIRLSPF 259 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~--~~v~vrls~~ 259 (399)
.+.+.+.++.+.++|.|.|-|--.- |.... .-+.++++.+|+..++ -+|++-..-
T Consensus 142 ~~~~~~~~~~~~~~G~~~i~l~DT~-------------------G~~~P---~~v~~lv~~l~~~~~~~~i~l~~H~Hn- 198 (268)
T cd07940 142 LDFLIEVVEAAIEAGATTINIPDTV-------------------GYLTP---EEFGELIKKLKENVPNIKVPISVHCHN- 198 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC-------------------CCCCH---HHHHHHHHHHHHhCCCCceeEEEEecC-
Confidence 1345777888888999998765333 43322 3458899999999864 245554442
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMK 297 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~ 297 (399)
++ + .+..-+-...+.|+++|+.+-..++
T Consensus 199 -~~-----G----lA~An~laAi~aG~~~iD~s~~GlG 226 (268)
T cd07940 199 -DL-----G----LAVANSLAAVEAGARQVECTINGIG 226 (268)
T ss_pred -Cc-----c----hHHHHHHHHHHhCCCEEEEEeeccc
Confidence 11 1 1111111223569999998755443
No 432
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=91.25 E-value=2.7 Score=40.00 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCc---
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--- 260 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~--- 260 (399)
.+..|++..+++|+|+|.+-+|- -+.|+|+.+.++ | -||.--+....
T Consensus 95 a~~nA~r~~ke~gA~aVKlEGG~----------------------------~~~~~i~~L~~~-g-IPV~gHiGLtPQ~v 144 (268)
T COG0413 95 ALKNAARLMKEAGADAVKLEGGE----------------------------EMAETIKRLTER-G-IPVMGHIGLTPQSV 144 (268)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCH----------------------------HHHHHHHHHHHc-C-CceEEEecCChhhh
Confidence 45556666677999999988542 234555554443 1 14433332111
Q ss_pred ----ccCCCC-CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHH
Q 015862 261 ----NYMESG-DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAI 335 (399)
Q Consensus 261 ----~~~~~~-~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L 335 (399)
.|.-.| ..+..+..++-++.|+++|+-.+.+- .. -.+.++.|.+.+++|+|+.|.=..-|.+-++
T Consensus 145 ~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE-~V---------p~~lA~~IT~~lsiPtIGIGAG~~cDGQvLV 214 (268)
T COG0413 145 NWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVLE-CV---------PAELAKEITEKLSIPTIGIGAGPGCDGQVLV 214 (268)
T ss_pred hccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEEe-cc---------HHHHHHHHHhcCCCCEEeecCCCCCCceEEE
Confidence 111112 12334445666888999998766642 10 1358889999999999888753222222222
Q ss_pred HcCCCcEEEechHHhhCCcHHHHHHhC
Q 015862 336 AEGRADLVVYGRLFLANPDLPRRFELN 362 (399)
Q Consensus 336 ~~G~~D~V~~gR~~iadPdl~~k~~~g 362 (399)
- -|++++-+. .-|-|+++.++-
T Consensus 215 ~---~D~lGl~~~--~~PkFvK~y~~l 236 (268)
T COG0413 215 M---HDMLGLSGG--HKPKFVKRYADL 236 (268)
T ss_pred e---eeccccCCC--CCCcHHHHHhcc
Confidence 1 356666442 457777777643
No 433
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=91.23 E-value=24 Score=37.81 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=119.8
Q ss_pred HHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCC
Q 015862 67 ILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAP 145 (399)
Q Consensus 67 ~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~ 145 (399)
+.--..... |.||.-||..+..... . | ..+++...+++++++. .|-++++-....|.--...+. .
T Consensus 280 ~~~~~~~ga~GiGL~RtEfl~l~~~~--~---P--~e~eq~~~y~~i~~~~--~~~pv~iRtlDig~DK~~~~~-----~ 345 (565)
T TIGR01417 280 VEGAERNGGEGIGLFRTEFLYMSRDQ--L---P--TEEEQFAAYKTVLEAM--ESDAVIVRTLDIGGDKELPYL-----N 345 (565)
T ss_pred HHHHHhCCCCEEEeeechHhhhCCCC--C---C--CHHHHHHHHHHHHHHh--CCCceEEECCCCCCccccccc-----C
Confidence 333333334 8899999999887431 1 1 2478899999999987 355788888776532111110 0
Q ss_pred cccC-CCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCC
Q 015862 146 ISCT-DKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQ 224 (399)
Q Consensus 146 ~aps-~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~ 224 (399)
.|. ..|.-+ .-|+ .+..+. .++.+.-.+|..+|.+.|..+|-+- ..+...
T Consensus 346 -~~~E~NP~LG---~Rgi---------R~~l~~-~~lf~~QlrAI~ra~~~G~~~Im~P-------------mV~t~e-- 396 (565)
T TIGR01417 346 -FPKEENPFLG---YRAI---------RLALER-EEILRTQLRAILRASAYGKLRIMFP-------------MVATVE-- 396 (565)
T ss_pred -CCCCCCcccc---chhh---------hhcccC-HHHHHHHHHHHHHHHhcCCCeEEec-------------CCCCHH--
Confidence 011 011100 0011 122222 2456666788888988888888753 333222
Q ss_pred CCCchhhhhHHHHHHHHHHHHHhC-------CC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc
Q 015862 225 YGGSLENRCRFALEIVEAVSNEIG-------AD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRM 296 (399)
Q Consensus 225 yGGslenR~r~~~eii~avR~~vg-------~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~ 296 (399)
-.+.+.++++...+.+. .. +|++=+- + ..+...+..+.+ |+|++.+..-..
T Consensus 397 -------E~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIE------------t-paav~~~d~ia~-~vDf~sIGtnDL 455 (565)
T TIGR01417 397 -------EIRAVKQELEEEKQELNDEGKAFDENIEVGVMIE------------I-PSAALIADHLAK-EVDFFSIGTNDL 455 (565)
T ss_pred -------HHHHHHHHHHHHHHHHHHhccccccCcEEEEEEc------------C-HHHHHhHHHHHh-hCCEEEEChhHH
Confidence 24445555554433221 11 2333221 1 224556666655 899998743222
Q ss_pred ccc-----------c--ccCCCch---hhHHHHh---hcCCcEEEeCCC--CHHHHHHHHHcCCCcEEEechHHhh
Q 015862 297 KTR-----------E--EKSECPH---SLLPMRK---AFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRLFLA 351 (399)
Q Consensus 297 ~~~-----------~--~~~~~~~---~~~~ir~---~~~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~gR~~ia 351 (399)
.+. . ..+..+. .++.+.+ ..++||..+|.+ ++..+..++..| ++.++++-..+.
T Consensus 456 sqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G-~~~lsv~~~~i~ 530 (565)
T TIGR01417 456 TQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLG-LRELSMSASSIL 530 (565)
T ss_pred HHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCC-CCEEEEChHhHH
Confidence 221 0 0111222 2222222 246889888876 799999999998 999999876654
No 434
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=91.14 E-value=3.7 Score=37.88 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEec
Q 015862 185 FRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 257 (399)
Q Consensus 185 f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls 257 (399)
..+.|+...++|+|.|+|+++- +|.+.-.-+.+.-++.+.++|+++++....-+|+|.-.
T Consensus 21 a~~~a~~~~~~GAdiIDIg~~s-------------t~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~ 80 (210)
T PF00809_consen 21 AVKRAREQVEAGADIIDIGAES-------------TRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF 80 (210)
T ss_dssp HHHHHHHHHHTT-SEEEEESST-------------SSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHhcCCEEEecccc-------------cCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC
Confidence 3444889999999999999876 45544345677788899999999998443337787543
No 435
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=91.06 E-value=2.8 Score=41.15 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=67.4
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHH---hCCC-ceEEEecCCcccCCCCCCChHHHHHHHHHhhh--hhCc
Q 015862 218 VNDRTDQYGGS--LENRCRFA---LEIVEAVSNE---IGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLN--KYGI 286 (399)
Q Consensus 218 ~N~R~D~yGGs--lenR~r~~---~eii~avR~~---vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le--~~Gv 286 (399)
.|||-+-+-+- .+|-.++. .+.++++|+. .+.. .|.|-.. +.+++.+.++.+. .+|+
T Consensus 163 ~~HR~gLsd~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~------------tleea~ea~~~~~~~~aga 230 (308)
T PLN02716 163 KNHRMGLFDMVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETR------------TLEEVKEVLEYLSDTKTSL 230 (308)
T ss_pred cccCCCCCceEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEEC------------CHHHHHHHHHhcccccCCC
Confidence 56777665553 45555553 4677777773 3322 2333222 3555444443221 1688
Q ss_pred eEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 287 LYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 287 d~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
|.|-+..-...+ ..-....+.+++..+.+ ..++-++||+|++.+.++.+.| +|+|++|....
T Consensus 231 DiImLDnm~~~~-~~~~~~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tG-VD~Is~Galth 294 (308)
T PLN02716 231 TRVMLDNMVVPL-ENGDVDVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTG-VTYISSGALTH 294 (308)
T ss_pred CEEEeCCCcccc-cccCCCHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcC-CCEEEeCcccc
Confidence 988764331111 11111122222222222 2568999999999999999998 99999998665
No 436
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=90.95 E-value=5.4 Score=38.76 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=81.8
Q ss_pred HHHHHHHHHh---------CCCEEEEccccchhhhhcccCcccCCCCCCCC--chhhhhHHHHHHHHHHHHHhCCCceEE
Q 015862 186 RLAARNAIEA---------GFDGVELHGAHGYLIDQFLKDQVNDRTDQYGG--SLENRCRFALEIVEAVSNEIGADRVGI 254 (399)
Q Consensus 186 ~~aA~~a~~a---------GfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGG--slenR~r~~~eii~avR~~vg~~~v~v 254 (399)
+-.|+.+.++ ||++|-+.+.. ++. +.=..| +| +++.. ++.++.|..++. -||.+
T Consensus 19 ~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~---~a~-----s~G~pD--~~~~~~~e~----~~~~~~I~~a~~-~Pv~~ 83 (285)
T TIGR02320 19 GLSALIAEEARVEVGGESLGFDGIWSSSLT---DST-----SRGVPD--IEEASWTQR----LDVVEFMFDVTT-KPIIL 83 (285)
T ss_pred HHHHHHHHHhhhcccCcCCCcCEEEechHH---HHH-----HCCCCC--cCcCCHHHH----HHHHHHHHhhcC-CCEEE
Confidence 6788999999 99999975432 221 111223 22 22222 234555555552 27776
Q ss_pred EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccc----cc-----cCCCchhhHHHHhhc----C--Cc
Q 015862 255 RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTR----EE-----KSECPHSLLPMRKAF----K--GT 319 (399)
Q Consensus 255 rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~----~~-----~~~~~~~~~~ir~~~----~--~p 319 (399)
.+-. + . ......+.++.++++|+.-|++-....... .. -.+..+.+++||.+. + .+
T Consensus 84 D~d~-------G-g-~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~ 154 (285)
T TIGR02320 84 DGDT-------G-G-NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFM 154 (285)
T ss_pred ecCC-------C-C-CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeE
Confidence 5432 2 2 455678889999999999999844322110 00 011223444444332 2 33
Q ss_pred EEEe-------CCC--CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHhC
Q 015862 320 FLVA-------GGY--DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFELN 362 (399)
Q Consensus 320 vi~~-------Ggi--t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~g 362 (399)
|++- .++ ..+.++.+.+.| +|.|++- +...+++-+.++.+.
T Consensus 155 IiARTDa~~~~~~~~eAi~Ra~ay~eAG-AD~ifv~-~~~~~~~ei~~~~~~ 204 (285)
T TIGR02320 155 IIARVESLILGKGMEDALKRAEAYAEAG-ADGIMIH-SRKKDPDEILEFARR 204 (285)
T ss_pred EEEecccccccCCHHHHHHHHHHHHHcC-CCEEEec-CCCCCHHHHHHHHHH
Confidence 4333 122 245567788888 9999984 224566655555443
No 437
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=90.94 E-value=17 Score=35.52 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=78.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCC--C-CchhhhhHHHHHHHHHHHHHh-CCC-ceEEEecCCc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQY--G-GSLENRCRFALEIVEAVSNEI-GAD-RVGIRLSPFA 260 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~y--G-GslenR~r~~~eii~avR~~v-g~~-~v~vrls~~~ 260 (399)
.+..++..++|.-||.|--.. .++|.... | ..+. ......+-|+++|++- +++ .|.-|.-...
T Consensus 93 ~~tV~~~~~aGvagi~IEDq~-----------~pk~cg~~~~g~~~l~-~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~ 160 (290)
T TIGR02321 93 HYVVPQYEAAGASAIVMEDKT-----------FPKDTSLRTDGRQELV-RIEEFQGKIAAATAARADRDFVVIARVEALI 160 (290)
T ss_pred HHHHHHHHHcCCeEEEEeCCC-----------CCcccccccCCCcccc-CHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 555677789999999986432 12332221 1 1222 1234455566666654 334 3566765421
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC--CcEEEeCCCCHH-HHHHHHHc
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK--GTFLVAGGYDRE-DGNKAIAE 337 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggit~~-~a~~~L~~ 337 (399)
. ....+++++-++...++|+|.+-+..+. ...+.++.+.+.++ +||+.+.+-++. .+.++-+-
T Consensus 161 --~----~~g~deAI~Ra~aY~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~l 226 (290)
T TIGR02321 161 --A----GLGQQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAAL 226 (290)
T ss_pred --c----cCCHHHHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHh
Confidence 1 1235788999999999999998874321 12346666777776 477554332221 22334444
Q ss_pred CCCcEEEechHH
Q 015862 338 GRADLVVYGRLF 349 (399)
Q Consensus 338 G~~D~V~~gR~~ 349 (399)
|.+..|.++-.+
T Consensus 227 g~~~~v~~g~~~ 238 (290)
T TIGR02321 227 SKVGIVIYGNHA 238 (290)
T ss_pred cCCcEEEEChHH
Confidence 657789998433
No 438
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.92 E-value=2.1 Score=42.93 Aligned_cols=102 Identities=10% Similarity=0.044 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCc---ccccccCCC---chhh
Q 015862 236 ALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRM---KTREEKSEC---PHSL 309 (399)
Q Consensus 236 ~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~---~~~~~~~~~---~~~~ 309 (399)
..+-++.||+..++.|+.+=|+.... ...+.++..+.++.+ +.|++.++-... ..+.....+ .+.+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~-----~~~~~~~~~~~~~~~---~adal~l~l~~~qe~~~p~g~~~f~~~le~i 178 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQL-----YGYGVEEAQRAVEMI---EADALQIHLNPLQELVQPEGDRDFRGWLDNI 178 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCcccc-----CCCCHHHHHHHHHhc---CCCcEEEeCccchhhcCCCCcccHHHHHHHH
Confidence 46778889998876677776655211 022344444444444 556666654221 111111122 2567
Q ss_pred HHHHhhcCCcEEE--eC-CCCHHHHHHHHHcCCCcEEEec
Q 015862 310 LPMRKAFKGTFLV--AG-GYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 310 ~~ir~~~~~pvi~--~G-git~~~a~~~L~~G~~D~V~~g 346 (399)
+.+++.+++||++ +| +.+.++|+.+.+.| +|+|.++
T Consensus 179 ~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~G-vd~I~Vs 217 (352)
T PRK05437 179 AEIVSALPVPVIVKEVGFGISKETAKRLADAG-VKAIDVA 217 (352)
T ss_pred HHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcC-CCEEEEC
Confidence 7888989999886 33 35899999999988 9998873
No 439
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.81 E-value=2.1 Score=44.48 Aligned_cols=137 Identities=20% Similarity=0.164 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCc
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~ 260 (399)
+++.|++. |.++|.|.|.|-.+. |. .+-+.+.++.+|+. |.. +..=++-.
T Consensus 96 vv~~fv~~---A~~~Gvd~irif~~l------------nd------------~~n~~~~i~~ak~~-G~~-v~~~i~~t- 145 (467)
T PRK14041 96 VVELFVKK---VAEYGLDIIRIFDAL------------ND------------IRNLEKSIEVAKKH-GAH-VQGAISYT- 145 (467)
T ss_pred hhHHHHHH---HHHCCcCEEEEEEeC------------CH------------HHHHHHHHHHHHHC-CCE-EEEEEEec-
Confidence 45556555 457899999877543 11 23345556666654 322 22112110
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC----CCCHHHHHHHHH
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG----GYDREDGNKAIA 336 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~L~ 336 (399)
+ ....+.+...++++.++++|+|.|.+.... + ...+....+.++.+|+.+++||-.=. |+....+..+++
T Consensus 146 -~---~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~-G-~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAie 219 (467)
T PRK14041 146 -V---SPVHTLEYYLEFARELVDMGVDSICIKDMA-G-LLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVE 219 (467)
T ss_pred -c---CCCCCHHHHHHHHHHHHHcCCCEEEECCcc-C-CcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHH
Confidence 0 013357788999999999999998875321 1 01111234577889998888864322 234667788999
Q ss_pred cCCCcEEE-----echHHhhCCcH
Q 015862 337 EGRADLVV-----YGRLFLANPDL 355 (399)
Q Consensus 337 ~G~~D~V~-----~gR~~iadPdl 355 (399)
.| ||.|- ||++. .||.+
T Consensus 220 aG-ad~vD~sv~~~g~ga-gN~at 241 (467)
T PRK14041 220 AG-ADMFDTAISPFSMGT-SQPPF 241 (467)
T ss_pred hC-CCEEEeeccccCCCC-CChhH
Confidence 99 88764 55543 36644
No 440
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=90.78 E-value=3.2 Score=38.40 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.7
Q ss_pred CcEEEeCCCCHHHHHHHHHcCCCcEEEechHHh
Q 015862 318 GTFLVAGGYDREDGNKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 318 ~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~i 350 (399)
++++-+||++++.+.+.+..| +..|++|-.+.
T Consensus 154 v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l~ 185 (211)
T COG0800 154 VRFCPTGGVSLDNAADYLAAG-VVAVGLGSWLV 185 (211)
T ss_pred CeEeecCCCCHHHHHHHHhCC-ceEEecCcccc
Confidence 458999999999999999999 88888776554
No 441
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=90.76 E-value=14 Score=39.45 Aligned_cols=214 Identities=14% Similarity=0.155 Sum_probs=128.8
Q ss_pred CCCccccCCeee--CCceeeCCCCCCCCCCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCCCCHHHHhh
Q 015862 32 FLTPYKMGNFNL--SHRVVLAPLTRQRSYNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSIWTKEQVEA 108 (399)
Q Consensus 32 Lf~P~~ig~~~l--kNRiv~apm~~~~~~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l~~d~~i~~ 108 (399)
.-..++||++.+ -|+|..-.|+.... .=++..++--.+.+. |+.+|=. ..-+.+..+.
T Consensus 10 ~Tr~V~vG~v~iGg~~PI~vQSMt~t~T---~D~~atv~Qi~~l~~aGceiVRv----------------tv~~~~~a~~ 70 (611)
T PRK02048 10 KTSVVNIGATPLGGPNPIRIQSMTNTST---MDTEACVAQAKRIIDAGGEYVRL----------------TTQGVREAEN 70 (611)
T ss_pred cceEEEEcCEeECCCCceEEEecCCCCc---ccHHHHHHHHHHHHHcCCCEEEE----------------cCCCHHHHHh
Confidence 446688888777 69999999986432 223555665666665 5554421 1224567889
Q ss_pred hHHHHHHHHHcCC--eEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChh----HHHHHH
Q 015862 109 WKPIVDAVHAKGG--IFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTD----EIPQIV 182 (399)
Q Consensus 109 ~~~l~~~vh~~g~--~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~----eI~~ii 182 (399)
++.+.+...+.|. ++++=+.-.-+.+.... -.-..+...|....+.- ....-.+-|++ |++.|.
T Consensus 71 l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~-------~~v~kiRINPGN~~~~~---k~f~~~~Ytdeey~~el~~i~ 140 (611)
T PRK02048 71 LMNINIGLRSQGYMVPLVADVHFNPKVADVAA-------QYAEKVRINPGNYVDPG---RTFKKLEYTDEEYAQEIQKIR 140 (611)
T ss_pred HHHHHHHHhhcCCCCCEEEecCCCcHHHHHHH-------HhhCCEEECCCcCCCcc---ccccccccchhhhhhhhhhHH
Confidence 9999999888774 56666543222221000 00111222221100000 00011233444 577788
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~ 261 (399)
+.|..-...|++.|- .|.|-.-||.|=.++++ +||.+.|.-..-++|-++-+++.-=.+ .|++|-|..
T Consensus 141 e~~~~~v~~ak~~~~-~iRIGvN~GSL~~~i~~--------~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~-- 209 (611)
T PRK02048 141 DRFVPFLNICKENHT-AIRIGVNHGSLSDRIMS--------RYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNT-- 209 (611)
T ss_pred HHHHHHHHHHHHCCC-CEEEecCCcCchHHHHH--------HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCc--
Confidence 899888999998875 67888889988888876 478777766666666666665532122 367777642
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceE-EEE
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILY-CHM 291 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~-l~v 291 (399)
...+.....++..|.+.|.+| ||+
T Consensus 210 ------~~~V~AyRlLa~~l~~~g~dyPLHL 234 (611)
T PRK02048 210 ------VVMVRTVRLLVAVMEAEGMHYPLHL 234 (611)
T ss_pred ------HHHHHHHHHHHHHHHhcCCCCceEE
Confidence 345666788899998888887 444
No 442
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.69 E-value=12 Score=36.42 Aligned_cols=75 Identities=16% Similarity=-0.078 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCccccc--c-c-------CCCchhhHHHHhhcCCcEEEeCCC---CH-HHHHHHH
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTRE--E-K-------SECPHSLLPMRKAFKGTFLVAGGY---DR-EDGNKAI 335 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~--~-~-------~~~~~~~~~ir~~~~~pvi~~Ggi---t~-~~a~~~L 335 (399)
+.++..++++.+++.|+|+|++--+.-.... . . ....+.++.+|+.+++||++=-.. +. +.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Confidence 4577888999999889999877322111000 0 0 011235667888888997755432 23 3445555
Q ss_pred HcCCCcEEEe
Q 015862 336 AEGRADLVVY 345 (399)
Q Consensus 336 ~~G~~D~V~~ 345 (399)
+.| +|+|.+
T Consensus 191 ~~G-adgi~~ 199 (299)
T cd02940 191 EGG-ADGVSA 199 (299)
T ss_pred HcC-CCEEEE
Confidence 565 998874
No 443
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=90.66 E-value=2.9 Score=42.33 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=36.1
Q ss_pred CchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 305 CPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 305 ~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
.|+.+++|++.+++||+.-|-.+.++|+.+++.| +|.|.++
T Consensus 241 tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G-~d~I~vs 281 (383)
T cd03332 241 TWEDLAFLREWTDLPIVLKGILHPDDARRAVEAG-VDGVVVS 281 (383)
T ss_pred CHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCC-CCEEEEc
Confidence 4567888999999999988777999999999999 9998853
No 444
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=90.62 E-value=1.5 Score=40.84 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=47.9
Q ss_pred CC-chhhhhHHHHHHHHHHHHHhCCC--ceEEEecC-Cccc---C-CCCCCChHHHHHHHHHhhhhhCceEEEEeCC
Q 015862 226 GG-SLENRCRFALEIVEAVSNEIGAD--RVGIRLSP-FANY---M-ESGDSNPEALGLYMAESLNKYGILYCHMVEP 294 (399)
Q Consensus 226 GG-slenR~r~~~eii~avR~~vg~~--~v~vrls~-~~~~---~-~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~ 294 (399)
|| |+|.-.-|.+.+++.+|+..|.. +..+=.|+ +.+. . ...|+++-+.....++.|++.|+|++-+..-
T Consensus 8 GGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~N 84 (230)
T COG1794 8 GGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTN 84 (230)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56 78888899999999999999865 32222222 1111 0 2245666677788899999999999987543
No 445
>PRK06852 aldolase; Validated
Probab=90.59 E-value=8.7 Score=37.66 Aligned_cols=151 Identities=15% Similarity=-0.007 Sum_probs=83.9
Q ss_pred HHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHH
Q 015862 103 KEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIV 182 (399)
Q Consensus 103 d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii 182 (399)
.+.+..+.++++.+|++|-++++=..--|..- . . ... .
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i-----------------~-~------------~~~------------~ 187 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV-----------------K-D------------EKD------------P 187 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCccc-----------------C-C------------Ccc------------H
Confidence 56788899999999999998776332111100 0 0 001 1
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCccc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~ 262 (399)
+-.+.||+.|.|.|+|.|++...- ++-+|+ .|-++.|-+.+|+-||.+.=.+
T Consensus 188 ~~ia~aaRiaaELGADIVKv~y~~----------------~~~~g~--------~e~f~~vv~~~g~vpVviaGG~---- 239 (304)
T PRK06852 188 HLIAGAAGVAACLGADFVKVNYPK----------------KEGANP--------AELFKEAVLAAGRTKVVCAGGS---- 239 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCC----------------cCCCCC--------HHHHHHHHHhCCCCcEEEeCCC----
Confidence 346889999999999999987431 122233 2333444456765566663332
Q ss_pred CCCCCCChHHHHHHHHHhhhh-hCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHH
Q 015862 263 MESGDSNPEALGLYMAESLNK-YGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIA 336 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~-~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~ 336 (399)
..+.+++++.++..-+ .|..-+.+ .+..++... +.-...++.|+..+ -++.++++|.+.++
T Consensus 240 -----k~~~~e~L~~v~~ai~~aGa~Gv~~-GRNIfQ~~~-p~~~~~~~Ai~~IV------H~~~s~~eA~~~~~ 301 (304)
T PRK06852 240 -----STDPEEFLKQLYEQIHISGASGNAT-GRNIHQKPL-DEAVRMCNAIYAIT------VEDKSVEEALKIYN 301 (304)
T ss_pred -----CCCHHHHHHHHHHHHHHcCCceeee-chhhhcCCC-chHHHHHHHHHHHH------hCCCCHHHHHHHhc
Confidence 1134556777765544 77665554 333333211 10122334444432 55668888877665
No 446
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=90.53 E-value=5.8 Score=40.62 Aligned_cols=74 Identities=15% Similarity=-0.025 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhhCceEEEEeCCCcccc---cccC-------CCchhhHHHHhhcCCcEEEe--CCC-CHHHHHHHHHc
Q 015862 271 EALGLYMAESLNKYGILYCHMVEPRMKTR---EEKS-------ECPHSLLPMRKAFKGTFLVA--GGY-DREDGNKAIAE 337 (399)
Q Consensus 271 ~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~---~~~~-------~~~~~~~~ir~~~~~pvi~~--Ggi-t~~~a~~~L~~ 337 (399)
.++..++++.+++.|+|+|++--+.-... .... ...+.++.+++.+++||++= -.+ +..+..+++++
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~ 191 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKR 191 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHH
Confidence 56688899999999999987632211100 0000 11235667788788997643 234 44444454554
Q ss_pred CCCcEEE
Q 015862 338 GRADLVV 344 (399)
Q Consensus 338 G~~D~V~ 344 (399)
.++|.|.
T Consensus 192 ~Gadgi~ 198 (420)
T PRK08318 192 GGADAVS 198 (420)
T ss_pred CCCCEEE
Confidence 4599888
No 447
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=90.50 E-value=4.3 Score=36.71 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCCceEE--EecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHH
Q 015862 236 ALEIVEAVSNEIGADRVGI--RLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMR 313 (399)
Q Consensus 236 ~~eii~avR~~vg~~~v~v--rls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir 313 (399)
-.+.++++|+..+..+|.+ ++.. . ...+++.+.++|+|++.+|.... . ......++.++
T Consensus 40 g~~~i~~i~~~~~~~~i~~~~~v~~---------~-----~~~~~~~~~~aGad~i~~h~~~~----~-~~~~~~i~~~~ 100 (202)
T cd04726 40 GMEAVRALREAFPDKIIVADLKTAD---------A-----GALEAEMAFKAGADIVTVLGAAP----L-STIKKAVKAAK 100 (202)
T ss_pred CHHHHHHHHHHCCCCEEEEEEEecc---------c-----cHHHHHHHHhcCCCEEEEEeeCC----H-HHHHHHHHHHH
Confidence 3789999999864335544 3331 1 12355777889999999874321 0 01123455555
Q ss_pred hhcCCcEEE--eCCCCHHHHHHHHHcCCCcEEEec
Q 015862 314 KAFKGTFLV--AGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 314 ~~~~~pvi~--~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
+ .++++++ .+-.|++++.+++..| +|+|.+.
T Consensus 101 ~-~g~~~~v~~~~~~t~~e~~~~~~~~-~d~v~~~ 133 (202)
T cd04726 101 K-YGKEVQVDLIGVEDPEKRAKLLKLG-VDIVILH 133 (202)
T ss_pred H-cCCeEEEEEeCCCCHHHHHHHHHCC-CCEEEEc
Confidence 4 4667654 4666999988877776 9999874
No 448
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=90.47 E-value=2.8 Score=39.35 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCC-CCCCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCC
Q 015862 59 NNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTP-SIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD 137 (399)
Q Consensus 59 ~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~-~l~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~ 137 (399)
.+.||++++..-.+.--.--+ ..|+.+.....- |+.--.+.+.++.++...|+.|..+.+=+- |.
T Consensus 68 E~a~t~em~~ia~~~kP~~vt-------LVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiD-------Pd 133 (234)
T cd00003 68 EMAPTEEMLEIALEVKPHQVT-------LVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFID-------PD 133 (234)
T ss_pred ccCCCHHHHHHHHHCCCCEEE-------ECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-------CC
Confidence 577889888865543321112 223333222222 233356778999999999999988765442 10
Q ss_pred CCC-CCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccc
Q 015862 138 YQP-NGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHG 207 (399)
Q Consensus 138 ~~~-~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~G 207 (399)
... ....-++...+.+.- | .+ ...++.++.++-++.+..+|+.|.+.| +++|+|||
T Consensus 134 ~~qi~~A~~~GAd~VELhT-----G----~Y--a~a~~~~~~~~el~~i~~aa~~a~~~G---L~VnAGHg 190 (234)
T cd00003 134 PEQIEAAKEVGADRVELHT-----G----PY--ANAYDKAEREAELERIAKAAKLARELG---LGVNAGHG 190 (234)
T ss_pred HHHHHHHHHhCcCEEEEec-----h----hh--hcCCCchhHHHHHHHHHHHHHHHHHcC---CEEecCCC
Confidence 000 000000000011000 0 11 224455666667889999999999986 69999996
No 449
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.46 E-value=0.74 Score=45.58 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=47.2
Q ss_pred HHHHHHhhhhhCc--eEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 274 GLYMAESLNKYGI--LYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 274 ~~~l~~~Le~~Gv--d~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
..+-+..|.++|+ |+|.+....- ......+.++.||+.++.+.+..|.+ |++++..+++.| +|+|.+|
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG-ad~i~vg 168 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG-ADATKVG 168 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC-cCEEEEC
Confidence 3456667777855 9988743320 01123457889999998444555666 999999999999 9998755
No 450
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.34 E-value=4.6 Score=38.62 Aligned_cols=112 Identities=22% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHH
Q 015862 101 WTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQ 180 (399)
Q Consensus 101 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ 180 (399)
.+.++++.+.++++.+|++|-+.++-..--| | .+. ++++.
T Consensus 124 ~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg----------------~-----------------------~~~-~~~~~ 163 (265)
T COG1830 124 TEREMIENISQVVEDAHELGMPLVAWAYPRG----------------P-----------------------AIK-DEYHR 163 (265)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEEEeccC----------------C-----------------------ccc-ccccc
Confidence 3468899999999999999988875443111 0 010 11344
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCc
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~ 260 (399)
..+.++.||+.+.|.|+|.|+.+-.. + .|..+.+-+.|| -||.++=.+
T Consensus 164 d~~~v~~aaRlaaelGADIiK~~ytg---------------------~--------~e~F~~vv~~~~-vpVviaGG~-- 211 (265)
T COG1830 164 DADLVGYAARLAAELGADIIKTKYTG---------------------D--------PESFRRVVAACG-VPVVIAGGP-- 211 (265)
T ss_pred cHHHHHHHHHHHHHhcCCeEeecCCC---------------------C--------hHHHHHHHHhCC-CCEEEeCCC--
Confidence 55678999999999999999976322 2 156666667776 466664443
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEE
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCH 290 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~ 290 (399)
..++.+++++++..+-+.|..-+.
T Consensus 212 ------k~~~~~~~l~~~~~ai~aGa~G~~ 235 (265)
T COG1830 212 ------KTETEREFLEMVTAAIEAGAMGVA 235 (265)
T ss_pred ------CCCChHHHHHHHHHHHHccCcchh
Confidence 233567788888877777765444
No 451
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=90.33 E-value=0.055 Score=54.28 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=79.9
Q ss_pred cCCCccccC-CeeeCCceeeCCCCC-------CCC-CCCCCCHHHHHHHHhhcC-CCcEEEEcccccCCCCCCCCCCCCC
Q 015862 31 LFLTPYKMG-NFNLSHRVVLAPLTR-------QRS-YNNVPQPHAILYYSQRTT-KGGFLIAEATGVSNTAQGNPNTPSI 100 (399)
Q Consensus 31 ~Lf~P~~ig-~~~lkNRiv~apm~~-------~~~-~~G~~t~~~~~~y~~~a~-g~Glii~e~~~V~~~g~~~~~~~~l 100 (399)
.|-..+++. +-..+||++.++++. +++ ..|.||+.++..|..+.- +.|+|+|+++.|+|....+++...+
T Consensus 17 ~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~~~~~~~~~~~ 96 (400)
T KOG0134|consen 17 NLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQNEEWAGNVIA 96 (400)
T ss_pred cccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeecccccccCCceEE
Confidence 455566665 477889998888743 233 469999999999999987 7899999999999999999988777
Q ss_pred CCHHHHhhhHHHHHHHH--HcCCeEEEecccCCCccCC
Q 015862 101 WTKEQVEAWKPIVDAVH--AKGGIFFCQIRHVGRVSNR 136 (399)
Q Consensus 101 ~~d~~i~~~~~l~~~vh--~~g~~i~~QL~H~Gr~~~~ 136 (399)
+.+..-..|+++-..-+ +.+...+.|+.|+|+++..
T Consensus 97 ~~e~~~~~~~ql~~~~~~~~~~~~~~~~~~h~~~q~~~ 134 (400)
T KOG0134|consen 97 FHENDSFEFRQLWHLGAKLQDGALAVQQLSHAGRQTPC 134 (400)
T ss_pred EecCCchHHHHHHHhhhhhhhhhhhHHhccCCcccccc
Confidence 76543333333333332 6788999999999999643
No 452
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=90.24 E-value=0.56 Score=43.07 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=44.2
Q ss_pred hhhHHHHhhcCCcE--EEeCCC-CHHHHHHHHHcCCCcEEEechHHhhCCcHHHHHHh
Q 015862 307 HSLLPMRKAFKGTF--LVAGGY-DREDGNKAIAEGRADLVVYGRLFLANPDLPRRFEL 361 (399)
Q Consensus 307 ~~~~~ir~~~~~pv--i~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~iadPdl~~k~~~ 361 (399)
++++..++.=..|| ++.||+ ||.+|.-+++-| ||.|.+|.+.+..+|-+++++.
T Consensus 197 dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLG-CdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606|consen 197 DLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLG-CDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred HHHHHHHHcCCCceEEecccCcCChhHHHHHHHcC-CCeEEeccccccCCCHHHHHHH
Confidence 34555555545675 578999 999999999999 9999999999999998888765
No 453
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=90.22 E-value=0.82 Score=40.70 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=46.5
Q ss_pred HHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEEec
Q 015862 278 AESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 278 ~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 346 (399)
...+++.+.|++++-.+ -.+..++++.+.+++|||++|=+ |-|++.++|+.| +-.|+-.
T Consensus 114 ~~~i~~~~pD~iEvLPG---------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aG-A~avSTs 173 (181)
T COG1954 114 IKQIEKSEPDFIEVLPG---------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAG-AVAVSTS 173 (181)
T ss_pred HHHHHHcCCCEEEEcCc---------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhC-cEEEeec
Confidence 34456678999998543 23468899999999999999988 999999999999 5556543
No 454
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=90.18 E-value=4.2 Score=36.55 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCC-chhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGG-SLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYME 264 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGG-slenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~ 264 (399)
++.|+.|.+||+=+|-.---- | ...|.+ || +-... ..+|+.|.++|. -||.-|.+..
T Consensus 24 ~eQAkIAE~AGA~AVMaLerv---------P-adiR~~--GGVaRMsD----P~~I~eI~~aVs-IPVMAK~RIG----- 81 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERV---------P-ADIRAA--GGVARMSD----PKMIKEIMDAVS-IPVMAKVRIG----- 81 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS----------H-HHHHHT--TS---S------HHHHHHHHHH-S-SEEEEEEETT-----
T ss_pred HHHHHHHHHhCCeEEEEeccC---------C-HhHHhc--CCccccCC----HHHHHHHHHheE-eceeeccccc-----
Confidence 678999999999999743211 1 112222 44 22222 356666777774 2776666541
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEE
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLV 343 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V 343 (399)
.-. =++.|++.|+|||+=|+-. . +.. +..-.=|..+++|++++-+ +.-+|..-+.+| +.+|
T Consensus 82 ----Hfv-----EAqiLealgVD~IDESEVL-T-pAD-----~~~HI~K~~F~vPFVcGar-nLGEALRRI~EG-AaMI 142 (208)
T PF01680_consen 82 ----HFV-----EAQILEALGVDYIDESEVL-T-PAD-----EENHIDKHNFKVPFVCGAR-NLGEALRRIAEG-AAMI 142 (208)
T ss_dssp -----HH-----HHHHHHHTT-SEEEEETTS----S------SS----GGG-SS-EEEEES-SHHHHHHHHHTT--SEE
T ss_pred ----eee-----hhhhHHHhCCceecccccc-c-ccc-----ccccccchhCCCCeEecCC-CHHHHHhhHHhh-hhhh
Confidence 111 2677899999999865431 1 111 1111224456777665444 566677777777 4443
No 455
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=90.16 E-value=18 Score=34.67 Aligned_cols=106 Identities=19% Similarity=0.133 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCC-C--cccccccCCCchhhHHHH
Q 015862 237 LEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEP-R--MKTREEKSECPHSLLPMR 313 (399)
Q Consensus 237 ~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~-~--~~~~~~~~~~~~~~~~ir 313 (399)
.++++++.+. | .||.++-+. ..+.++....++.+.+.|..-|.+... . +.+......++..+..+|
T Consensus 122 ~~LL~~~a~~-g-kPVilk~G~---------~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk 190 (260)
T TIGR01361 122 FELLKEVGKQ-G-KPVLLKRGM---------GNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLK 190 (260)
T ss_pred HHHHHHHhcC-C-CcEEEeCCC---------CCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHH
Confidence 3466666432 3 288887654 225677888888888888644444332 2 211112233556677889
Q ss_pred hhcCCcEEE-eC---CC---CHHHHHHHHHcCCCcEEEechHHhhCCc
Q 015862 314 KAFKGTFLV-AG---GY---DREDGNKAIAEGRADLVVYGRLFLANPD 354 (399)
Q Consensus 314 ~~~~~pvi~-~G---gi---t~~~a~~~L~~G~~D~V~~gR~~iadPd 354 (399)
+.++.||+. .+ |. .+..+..++.-| +|++++-+-+--|-.
T Consensus 191 ~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~G-a~gl~iE~H~t~d~a 237 (260)
T TIGR01361 191 KETHLPIIVDPSHAAGRRDLVIPLAKAAIAAG-ADGLMIEVHPDPEKA 237 (260)
T ss_pred HhhCCCEEEcCCCCCCccchHHHHHHHHHHcC-CCEEEEEeCCCcccc
Confidence 888999988 22 32 266778899998 998877655444433
No 456
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=90.12 E-value=3.7 Score=39.29 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=56.4
Q ss_pred HHHHHHHHH-HhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCc---
Q 015862 185 FRLAARNAI-EAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA--- 260 (399)
Q Consensus 185 f~~aA~~a~-~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~--- 260 (399)
-++.|.|.. |+|+|+|.|-++.. ..++|+++-++ |- ||.=-|....
T Consensus 96 av~nA~rl~ke~GadaVKlEGg~~----------------------------~~~~i~~l~~~-GI-PV~gHiGLtPQ~~ 145 (261)
T PF02548_consen 96 AVRNAGRLMKEAGADAVKLEGGAE----------------------------IAETIKALVDA-GI-PVMGHIGLTPQSV 145 (261)
T ss_dssp HHHHHHHHHHTTT-SEEEEEBSGG----------------------------GHHHHHHHHHT-T---EEEEEES-GGGH
T ss_pred HHHHHHHHHHhcCCCEEEeccchh----------------------------HHHHHHHHHHC-CC-cEEEEecCchhhe
Confidence 355555554 59999999986541 25666666543 11 4433332111
Q ss_pred ----ccCCCCC-CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCC
Q 015862 261 ----NYMESGD-SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGG 325 (399)
Q Consensus 261 ----~~~~~~~-~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg 325 (399)
.|.-.+. .+.....++-++.|+++|+-.+.+..- -.+.++.|.+.+++|+|+.|.
T Consensus 146 ~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 146 HQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECV----------PAELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp HHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESB----------BHHHHHHHHHHSSS-EEEESS
T ss_pred eccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecC----------HHHHHHHHHHhCCCCEEecCC
Confidence 1111111 123344566688899999887765311 235788999999999998874
No 457
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=90.08 E-value=3.3 Score=38.95 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHhhcCCCcEEEEcccccCCCCCCCCCCC-CCCCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCC
Q 015862 59 NNVPQPHAILYYSQRTTKGGFLIAEATGVSNTAQGNPNTP-SIWTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRD 137 (399)
Q Consensus 59 ~G~~t~~~~~~y~~~a~g~Glii~e~~~V~~~g~~~~~~~-~l~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~ 137 (399)
.+.|+++++++-.+.-- -. +...|+.+.....- |+.-..+.+.+++++...|+.|..+.+=+- |.
T Consensus 68 E~a~~~emi~ia~~vkP--~~-----vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiD-------P~ 133 (237)
T TIGR00559 68 EMAPTEEMIRIAEEIKP--EQ-----VTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFID-------AD 133 (237)
T ss_pred ccCCCHHHHHHHHHcCC--CE-----EEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeC-------CC
Confidence 57789998886665432 11 12223333322222 233356778999999999999987665432 10
Q ss_pred CCCCCCCC-----cccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccc
Q 015862 138 YQPNGQAP-----ISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHG 207 (399)
Q Consensus 138 ~~~~~~~~-----~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~G 207 (399)
. .+. .+...+.+.- | .+ ...++..++.+-++.+..+|+.|.+.| +++|+|||
T Consensus 134 ~----~qi~~A~~~GAd~VELhT-----G----~Y--A~a~~~~~~~~el~~i~~aa~~A~~lG---L~VnAGHg 190 (237)
T TIGR00559 134 K----DQISAAAEVGADRIEIHT-----G----PY--ANAYNKKEMAEELQRIVKASVHAHSLG---LKVNAGHG 190 (237)
T ss_pred H----HHHHHHHHhCcCEEEEec-----h----hh--hcCCCchhHHHHHHHHHHHHHHHHHcC---CEEecCCC
Confidence 0 000 0000011000 0 11 123455565555889999999999985 79999997
No 458
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.02 E-value=5 Score=43.05 Aligned_cols=128 Identities=17% Similarity=0.135 Sum_probs=80.0
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-c--eEEEecCCcccCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-R--VGIRLSPFANYMESG 266 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~--v~vrls~~~~~~~~~ 266 (399)
+.|.++|.|.|.|-.+.. . .+-+.+.++.+|+. |-. . |++-.++
T Consensus 104 ~~a~~~Gid~~rifd~ln------------d------------~~~~~~ai~~ak~~-G~~~~~~i~yt~~p-------- 150 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMN------------D------------PRNLETALKAVRKV-GAHAQGTLSYTTSP-------- 150 (593)
T ss_pred HHHHhcCCCEEEEeeeCC------------c------------HHHHHHHHHHHHHc-CCeEEEEEEEeeCC--------
Confidence 346789999999875431 1 24456777777775 432 2 3333333
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCC----CCHHHHHHHHHcCCCcE
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGG----YDREDGNKAIAEGRADL 342 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg----it~~~a~~~L~~G~~D~ 342 (399)
..+.+...++++.++++|+|.|.+.... +. ..+....+.++.+|+.+++||-.=.- +.......+++.| ||.
T Consensus 151 -~~~~~~~~~~a~~l~~~Gad~i~i~Dt~-G~-l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAG-a~~ 226 (593)
T PRK14040 151 -VHTLQTWVDLAKQLEDMGVDSLCIKDMA-GL-LKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAG-IDG 226 (593)
T ss_pred -ccCHHHHHHHHHHHHHcCCCEEEECCCC-CC-cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcC-CCE
Confidence 2357778899999999999999875431 10 11112345778889888888643222 2356667899998 886
Q ss_pred E-----EechHHhhCCcH
Q 015862 343 V-----VYGRLFLANPDL 355 (399)
Q Consensus 343 V-----~~gR~~iadPdl 355 (399)
| +||+. ..||.+
T Consensus 227 vD~ai~glG~~-~Gn~~l 243 (593)
T PRK14040 227 VDTAISSMSMT-YGHSAT 243 (593)
T ss_pred EEecccccccc-ccchhH
Confidence 6 45654 366654
No 459
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=89.98 E-value=13 Score=35.26 Aligned_cols=132 Identities=10% Similarity=0.059 Sum_probs=77.2
Q ss_pred CHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHH
Q 015862 102 TKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQI 181 (399)
Q Consensus 102 ~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~i 181 (399)
.++.++.++++++.+++.|..+.+.+...+|. +
T Consensus 105 ~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----------------------------------------~------- 137 (259)
T cd07939 105 RAWVLDQLRRLVGRAKDRGLFVSVGAEDASRA----------------------------------------D------- 137 (259)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeeccCCCC----------------------------------------C-------
Confidence 45667889999999999998766555322110 0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
.+.+.+.++.+.++|.|.|-|--.. |.... .-+.++++.+|+.++ -+|++-..- +
T Consensus 138 ~~~~~~~~~~~~~~G~~~i~l~DT~-------------------G~~~P---~~v~~lv~~l~~~~~-~~l~~H~Hn--~ 192 (259)
T cd07939 138 PDFLIEFAEVAQEAGADRLRFADTV-------------------GILDP---FTTYELIRRLRAATD-LPLEFHAHN--D 192 (259)
T ss_pred HHHHHHHHHHHHHCCCCEEEeCCCC-------------------CCCCH---HHHHHHHHHHHHhcC-CeEEEEecC--C
Confidence 1345777788888999998765333 43332 345788899999886 356664442 1
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+ + . +..-+-..-++|+++|+.+-..++......+.-..+..+++
T Consensus 193 ~-----G--l--a~An~laAi~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~ 236 (259)
T cd07939 193 L-----G--L--ATANTLAAVRAGATHVSVTVNGLGERAGNAALEEVVMALKH 236 (259)
T ss_pred C-----C--h--HHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHHHHHH
Confidence 1 1 1 11112222367999999876555433222222233444444
No 460
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=89.92 E-value=8.3 Score=38.34 Aligned_cols=131 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHHHH
Q 015862 104 EQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQIVN 183 (399)
Q Consensus 104 ~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ii~ 183 (399)
...+..++.++.+++.|..+.+++..+.+.. .+
T Consensus 111 ~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~-----------------------------------------------~e 143 (333)
T TIGR03217 111 TEADVSEQHIGMARELGMDTVGFLMMSHMTP-----------------------------------------------PE 143 (333)
T ss_pred chHHHHHHHHHHHHHcCCeEEEEEEcccCCC-----------------------------------------------HH
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCccc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANY 262 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~ 262 (399)
.+++.|+.+.++|.|.|-|- |-+|....++. .++++++|+.++++ +|++-..-
T Consensus 144 ~l~~~a~~~~~~Ga~~i~i~-------------------DT~G~~~P~~v---~~~v~~l~~~l~~~i~ig~H~Hn---- 197 (333)
T TIGR03217 144 KLAEQAKLMESYGADCVYIV-------------------DSAGAMLPDDV---RDRVRALKAVLKPETQVGFHAHH---- 197 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEc-------------------cCCCCCCHHHH---HHHHHHHHHhCCCCceEEEEeCC----
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK 314 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~ 314 (399)
+...+..-+....++|+++|+.+-..++......+...++..+.+
T Consensus 198 -------nlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~ 242 (333)
T TIGR03217 198 -------NLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDR 242 (333)
T ss_pred -------CCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHHh
No 461
>PLN00191 enolase
Probab=89.91 E-value=1.9 Score=44.69 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhhh-hCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC--CHHHHHHHHHcCCCcEEEe
Q 015862 270 PEALGLYMAESLNK-YGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 270 ~~~~~~~l~~~Le~-~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~ 345 (399)
+.++++++.+.|.+ +++.+|+ .|. ....++..+.+++..++||++...+ +++++.++++.+.||.|.+
T Consensus 296 s~~e~i~~~~~L~~~y~I~~IE--DPl------~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~i 366 (457)
T PLN00191 296 SGDELIDLYKEFVSDYPIVSIE--DPF------DQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLL 366 (457)
T ss_pred CHHHHHHHHHHHhhcCCcEEEE--CCC------CcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEe
Confidence 56667777777544 7877776 442 1224556677888888998777765 4999999999999998865
No 462
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=89.90 E-value=2.7 Score=38.98 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=39.5
Q ss_pred hhhCceEEEEeCCCcccccccCCCch---hhHHHHh------hcCCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhC
Q 015862 282 NKYGILYCHMVEPRMKTREEKSECPH---SLLPMRK------AFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 282 e~~Gvd~l~v~~~~~~~~~~~~~~~~---~~~~ir~------~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iad 352 (399)
.+.|+++|+++.+.|........... .+.++++ .++..|-++-|+|......+++--..-=+.+|-+++++
T Consensus 142 ~~~gA~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnAGHgLty~Nv~~~a~~~~i~ElnIGH~iia~ 221 (243)
T COG0854 142 AEVGAPRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNAGHGLTYHNVKPLAAIPPLAELNIGHSIIAR 221 (243)
T ss_pred HHhCCCEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHHcCceEecCCCccccchHHHhcCCcceeecccHHHHHH
Confidence 35578888887776543322111111 1222222 23555666667787776666654445557777777775
Q ss_pred C
Q 015862 353 P 353 (399)
Q Consensus 353 P 353 (399)
-
T Consensus 222 A 222 (243)
T COG0854 222 A 222 (243)
T ss_pred H
Confidence 4
No 463
>PLN02979 glycolate oxidase
Probab=89.86 E-value=3.9 Score=41.04 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=36.0
Q ss_pred CchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 305 CPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 305 ~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
.|+.++++|+.+++||++-|-.++++|+.+++.| +|.|.++
T Consensus 211 tW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~G-vd~I~Vs 251 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIVS 251 (366)
T ss_pred CHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcC-CCEEEEC
Confidence 4567889999999999988888999999999999 9988774
No 464
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=89.81 E-value=5.9 Score=36.46 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCce
Q 015862 173 LRTDEIPQIVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRV 252 (399)
Q Consensus 173 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v 252 (399)
.|.+|++.+.++ ++.++++|+||+-+-+ |.+ + |++. .+.++.+.++.++-++
T Consensus 66 Ys~~E~~~M~~d----I~~~~~~GadG~VfG~---------L~~--d-------g~iD------~~~~~~Li~~a~~~~~ 117 (201)
T PF03932_consen 66 YSDEEIEIMKED----IRMLRELGADGFVFGA---------LTE--D-------GEID------EEALEELIEAAGGMPV 117 (201)
T ss_dssp --HHHHHHHHHH----HHHHHHTT-SEEEE-----------BET--T-------SSB-------HHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHH----HHHHHHcCCCeeEEEe---------ECC--C-------CCcC------HHHHHHHHHhcCCCeE
Confidence 577888887766 4777889999998542 222 1 1222 4555555555554454
Q ss_pred EEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc--CCcEEEeCCCCHHH
Q 015862 253 GIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF--KGTFLVAGGYDRED 330 (399)
Q Consensus 253 ~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggit~~~ 330 (399)
.+-- ++|.. .+ . .+..+.|.+.|++-|--+.+... -....+.++.+.+.. ++.++.+||++++.
T Consensus 118 tFHR-AfD~~-----~d-~---~~al~~L~~lG~~rVLTSGg~~~----a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~n 183 (201)
T PF03932_consen 118 TFHR-AFDEV-----PD-P---EEALEQLIELGFDRVLTSGGAPT----ALEGIENLKELVEQAKGRIEIMPGGGVRAEN 183 (201)
T ss_dssp EE-G-GGGGS-----ST-H---HHHHHHHHHHT-SEEEESTTSSS----TTTCHHHHHHHHHHHTTSSEEEEESS--TTT
T ss_pred EEeC-cHHHh-----CC-H---HHHHHHHHhcCCCEEECCCCCCC----HHHHHHHHHHHHHHcCCCcEEEecCCCCHHH
Confidence 4422 33322 11 2 23455666779997765544211 112234444443333 36699999999999
Q ss_pred HHHHHHcCCCcEEEe
Q 015862 331 GNKAIAEGRADLVVY 345 (399)
Q Consensus 331 a~~~L~~G~~D~V~~ 345 (399)
+..++++..+.-|-+
T Consensus 184 v~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 184 VPELVEETGVREIHG 198 (201)
T ss_dssp HHHHHHHHT-SEEEE
T ss_pred HHHHHHhhCCeEEee
Confidence 999998434665544
No 465
>PRK15452 putative protease; Provisional
Probab=89.69 E-value=9.6 Score=39.45 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=73.8
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCC--CCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTD--QYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D--~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
.++++.|.++|+|+|-+-... .|.|.. .| +.+ -+.+.++-+++. |. .|-+-++...
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~-----------~~~R~~~~~f--~~e----dl~eav~~ah~~-g~-kvyvt~n~i~--- 70 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPR-----------YSLRVRNNEF--NHE----NLALGINEAHAL-GK-KFYVVVNIAP--- 70 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCc-----------cchhhhccCC--CHH----HHHHHHHHHHHc-CC-EEEEEecCcC---
Confidence 456678889999999974322 344432 22 122 244455544442 21 4555544321
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCC---CHHHHHHHHHcCC
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGY---DREDGNKAIAEGR 339 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi---t~~~a~~~L~~G~ 339 (399)
.....+......+.|.+.|+|.|-+.. +..+..+|+.. +.+|.+.-.+ +...++-+.+.|
T Consensus 71 ---~e~el~~~~~~l~~l~~~gvDgvIV~d------------~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG- 134 (443)
T PRK15452 71 ---HNAKLKTFIRDLEPVIAMKPDALIMSD------------PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMG- 134 (443)
T ss_pred ---CHHHHHHHHHHHHHHHhCCCCEEEEcC------------HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCC-
Confidence 122345566677788899999888752 34555666654 4677666553 455555565665
Q ss_pred CcEEEechHH
Q 015862 340 ADLVVYGRLF 349 (399)
Q Consensus 340 ~D~V~~gR~~ 349 (399)
++-|.++|-+
T Consensus 135 ~~rvvLSrEL 144 (443)
T PRK15452 135 LTRVILSREL 144 (443)
T ss_pred CcEEEECCcC
Confidence 7778887765
No 466
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=89.63 E-value=10 Score=36.14 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=82.5
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEEEecCCcccCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESG 266 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~vrls~~~~~~~~~ 266 (399)
.|+|.++.|.|+|.+-. --|.|+- ---+.|..++.++...+++. + +..+-+-.++.- .
T Consensus 116 sa~riK~~G~~avK~Lv--------------y~~~D~~-e~neqk~a~ierigsec~ae---di~f~lE~ltyd~~--~- 174 (306)
T COG3684 116 SAKRIKEDGGDAVKFLV--------------YYRSDED-EINEQKLAYIERIGSECHAE---DLPFFLEPLTYDPR--I- 174 (306)
T ss_pred CHHHHHHhcccceEEEE--------------EEcCCch-HHhHHHHHHHHHHHHHhhhc---CCceeEeeeecCCC--C-
Confidence 68999999999999762 2466643 22345566666666666553 3 333333221110 0
Q ss_pred CCChH-------HHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh---hcCCc-EEEeCCCCH----HHH
Q 015862 267 DSNPE-------ALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK---AFKGT-FLVAGGYDR----EDG 331 (399)
Q Consensus 267 ~~~~~-------~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~---~~~~p-vi~~Ggit~----~~a 331 (399)
.+.. ....+-++.+-+-|+|.+.+.-|.+. +.+..+.+..+++ +.+.| ++.+.|++. ...
T Consensus 175 -~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPvyv----eGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv 249 (306)
T COG3684 175 -GDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPVYV----EGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTV 249 (306)
T ss_pred -CChHHHHhhchHHHHHHHHHhccCCCceEEeecceec----cCccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHH
Confidence 1121 12234455666679999888666532 2234555555554 35688 777888853 444
Q ss_pred HHHHHcCCCcEEEechHHhhC
Q 015862 332 NKAIAEGRADLVVYGRLFLAN 352 (399)
Q Consensus 332 ~~~L~~G~~D~V~~gR~~iad 352 (399)
+-+.+.| +..|.-||+.-++
T Consensus 250 ~fA~eaG-AsGvL~GRAtWa~ 269 (306)
T COG3684 250 RFAMEAG-ASGVLAGRATWAG 269 (306)
T ss_pred HHHHHcC-CceeEechhhhhc
Confidence 5566777 7999999998764
No 467
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.55 E-value=6.9 Score=39.04 Aligned_cols=151 Identities=19% Similarity=0.092 Sum_probs=80.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcc-cC--CCCCCC--CchhhhhHH----HHHHHHHHHHHhCCCceEEEe
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQV-ND--RTDQYG--GSLENRCRF----ALEIVEAVSNEIGADRVGIRL 256 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~-N~--R~D~yG--GslenR~r~----~~eii~avR~~vg~~~v~vrl 256 (399)
++..+.+.++||.+|++..-. ..|.. |. |..++- .++.|++-| +..+++.+++.-..-||.+-|
T Consensus 72 ~~~~~~~~~~G~Gavv~ktvt-------~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI 144 (344)
T PRK05286 72 GEAIDALGALGFGFVEVGTVT-------PRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINI 144 (344)
T ss_pred hHHHHHHHHcCCCEEEeCCcC-------CCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEE
Confidence 556666788999999987532 11111 22 222222 234555544 455566666543222788888
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeC--CCcccc-c--ccCCCchhhHHHHhhcC-----CcEEEe--C
Q 015862 257 SPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVE--PRMKTR-E--EKSECPHSLLPMRKAFK-----GTFLVA--G 324 (399)
Q Consensus 257 s~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~--~~~~~~-~--~~~~~~~~~~~ir~~~~-----~pvi~~--G 324 (399)
+..... ......+++.++++.+++ ++|++++-- |..... . ......+.++.+|+.++ +||++= -
T Consensus 145 ~~~~~~---~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp 220 (344)
T PRK05286 145 GKNKDT---PLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP 220 (344)
T ss_pred ecCCCC---CcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC
Confidence 653211 012246777888888765 588887632 221100 0 00011246778888887 887643 2
Q ss_pred CCCH---HHHHHHHHcCCCcEEEech
Q 015862 325 GYDR---EDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 325 git~---~~a~~~L~~G~~D~V~~gR 347 (399)
+++. ....+++++.++|+|.+.=
T Consensus 221 ~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 221 DLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3443 2333444444499887743
No 468
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.51 E-value=2.1 Score=39.93 Aligned_cols=139 Identities=16% Similarity=0.063 Sum_probs=84.1
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
-.+...++++|.|.|.+.....-+ ++...++-+.+.-.+.+.++++.+|+.- +.+.++..+.
T Consensus 70 ~~~~~~~~~~g~~~i~i~~~~s~~----------~~~~~~~~~~~~~~~~~~~~v~~ak~~g----~~v~~~~~~~---- 131 (237)
T PF00682_consen 70 ERAVEAAKEAGIDIIRIFISVSDL----------HIRKNLNKSREEALERIEEAVKYAKELG----YEVAFGCEDA---- 131 (237)
T ss_dssp HHHHHHHHHTTSSEEEEEEETSHH----------HHHHHTCSHHHHHHHHHHHHHHHHHHTT----SEEEEEETTT----
T ss_pred HHHHHhhHhccCCEEEecCcccHH----------HHHHhhcCCHHHHHHHHHHHHHHHHhcC----CceEeCcccc----
Confidence 334456778999999987655221 2223445566666667777777776642 2335554221
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEe--CCC--CHHHHHHHHHcCCC
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVA--GGY--DREDGNKAIAEGRA 340 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~--Ggi--t~~~a~~~L~~G~~ 340 (399)
...+.+...++++.+.++|+|.|.+.... +.. .+....+.++.+|+.++ +++-.= ..+ -...+..+++.| |
T Consensus 132 -~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~-G~~-~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aG-a 207 (237)
T PF00682_consen 132 -SRTDPEELLELAEALAEAGADIIYLADTV-GIM-TPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAG-A 207 (237)
T ss_dssp -GGSSHHHHHHHHHHHHHHT-SEEEEEETT-S-S--HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT--
T ss_pred -ccccHHHHHHHHHHHHHcCCeEEEeeCcc-CCc-CHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcC-C
Confidence 12356788999999999999998875331 110 11113357888999988 664322 223 356678899998 9
Q ss_pred cEEEec
Q 015862 341 DLVVYG 346 (399)
Q Consensus 341 D~V~~g 346 (399)
|.|-.+
T Consensus 208 ~~id~t 213 (237)
T PF00682_consen 208 DRIDGT 213 (237)
T ss_dssp SEEEEB
T ss_pred CEEEcc
Confidence 988543
No 469
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.51 E-value=3.4 Score=41.76 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=81.5
Q ss_pred HHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCC
Q 015862 189 ARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDS 268 (399)
Q Consensus 189 A~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~ 268 (399)
..+|.++|+|.|.|-..- ..-++...++.+.+.-.+.+.+.++.+|+. | +.|+++..+ ...
T Consensus 81 i~~a~~~g~~~i~i~~~~----------Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~-G---~~v~~~~ed-----~~r 141 (378)
T PRK11858 81 IDASIDCGVDAVHIFIAT----------SDIHIKHKLKKTREEVLERMVEAVEYAKDH-G---LYVSFSAED-----ASR 141 (378)
T ss_pred HHHHHhCCcCEEEEEEcC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEecc-----CCC
Confidence 345667899998876533 122455567777777677777777777664 2 234555421 123
Q ss_pred ChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC--CC--CHHHHHHHHHcCCCcEE
Q 015862 269 NPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG--GY--DREDGNKAIAEGRADLV 343 (399)
Q Consensus 269 ~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--gi--t~~~a~~~L~~G~~D~V 343 (399)
.+.+...++++.+.++|++.|.+.... +.. .+....+.++.+++.+++|+-.=+ .+ -...+..+++.| ++.|
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~-~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aG-a~~v 217 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTV-GIL-DPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAG-AKQV 217 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccC-CCC-CHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcC-CCEE
Confidence 457788999999999999998875431 110 111233466778887777653322 22 245566788888 6654
No 470
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.48 E-value=3.4 Score=44.38 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCc
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~ 260 (399)
+++.|++ +|.++|.|.|.|-.+.-. .+-+...++.+|+. |.. +.+=++-.
T Consensus 97 vv~~~v~---~A~~~Gvd~irif~~lnd------------------------~~n~~~~i~~ak~~-G~~-v~~~i~~t- 146 (592)
T PRK09282 97 VVEKFVE---KAAENGIDIFRIFDALND------------------------VRNMEVAIKAAKKA-GAH-VQGTISYT- 146 (592)
T ss_pred hhHHHHH---HHHHCCCCEEEEEEecCh------------------------HHHHHHHHHHHHHc-CCE-EEEEEEec-
Confidence 3444444 456789999988755411 13345556666654 432 22212110
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEE----eCCCCHHHHHHHHH
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLV----AGGYDREDGNKAIA 336 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~----~Ggit~~~a~~~L~ 336 (399)
+. ...+.+...++++.+.++|+|.|.+.... +. ..+......++.+|+.+++||-. +.|+.......+++
T Consensus 147 -~~---p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~-G~-~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~ 220 (592)
T PRK09282 147 -TS---PVHTIEKYVELAKELEEMGCDSICIKDMA-GL-LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVE 220 (592)
T ss_pred -cC---CCCCHHHHHHHHHHHHHcCCCEEEECCcC-CC-cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHH
Confidence 00 12357788999999999999998875421 10 01112345677889888877543 22334677788999
Q ss_pred cCCCcEE-----EechHHhhCCcHHH
Q 015862 337 EGRADLV-----VYGRLFLANPDLPR 357 (399)
Q Consensus 337 ~G~~D~V-----~~gR~~iadPdl~~ 357 (399)
.| ||.| +||+.. .||.+-.
T Consensus 221 aG-ad~vD~ai~g~g~~a-gn~~~e~ 244 (592)
T PRK09282 221 AG-VDIIDTAISPLAFGT-SQPPTES 244 (592)
T ss_pred hC-CCEEEeeccccCCCc-CCHhHHH
Confidence 99 8866 455544 4776533
No 471
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.47 E-value=0.98 Score=47.11 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEE
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVV 344 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 344 (399)
..+.++.|.+.|+|.|.+.... .- .....+.++.||+.+ ++|||+....|.+.++.+++.| +|+|-
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~-g~---~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G-~d~i~ 292 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAH-GH---QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAG-ANIIK 292 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCC-CC---cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhC-CCEEE
Confidence 4578888999999998774332 10 112356788899886 5888884344999999999999 99986
No 472
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=89.46 E-value=0.94 Score=41.71 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=67.3
Q ss_pred HHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCChHH
Q 015862 193 IEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEA 272 (399)
Q Consensus 193 ~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~~~~ 272 (399)
.++|.|.|-+|.=. ...+.++++.||+. | -..++=+++. .+.+
T Consensus 77 ~~~g~~~i~~H~E~--------------------------~~~~~~~i~~ik~~-g-~k~GialnP~---------T~~~ 119 (201)
T PF00834_consen 77 AEAGADYITFHAEA--------------------------TEDPKETIKYIKEA-G-IKAGIALNPE---------TPVE 119 (201)
T ss_dssp HHHT-SEEEEEGGG--------------------------TTTHHHHHHHHHHT-T-SEEEEEE-TT---------S-GG
T ss_pred HhcCCCEEEEcccc--------------------------hhCHHHHHHHHHHh-C-CCEEEEEECC---------CCch
Confidence 66799999999532 12357889999986 3 2567777873 2232
Q ss_pred HHHHHHHhhhhhCceEEEEeCC--Ccc-cccccCCCchhhHHHHhh-----cCCcEEEeCCCCHHHHHHHHHcCCCcEEE
Q 015862 273 LGLYMAESLNKYGILYCHMVEP--RMK-TREEKSECPHSLLPMRKA-----FKGTFLVAGGYDREDGNKAIAEGRADLVV 344 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~--~~~-~~~~~~~~~~~~~~ir~~-----~~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 344 (399)
. +...|. -+|++.+-.- .+. +.+ .+...+-++++|+. .+..+.+-||++.+.+..+.+.| +|.+.
T Consensus 120 ~---~~~~l~--~vD~VlvMsV~PG~~Gq~f-~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aG-ad~~V 192 (201)
T PF00834_consen 120 E---LEPYLD--QVDMVLVMSVEPGFGGQKF-IPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAG-ADIFV 192 (201)
T ss_dssp G---GTTTGC--CSSEEEEESS-TTTSSB---HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT---EEE
T ss_pred H---HHHHhh--hcCEEEEEEecCCCCcccc-cHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcC-CCEEE
Confidence 2 222233 2788766432 111 110 01111222333333 23568888999999999999999 99999
Q ss_pred echHHhhC
Q 015862 345 YGRLFLAN 352 (399)
Q Consensus 345 ~gR~~iad 352 (399)
+|++++..
T Consensus 193 ~Gs~iF~~ 200 (201)
T PF00834_consen 193 AGSAIFKA 200 (201)
T ss_dssp ESHHHHTS
T ss_pred ECHHHhCC
Confidence 99998753
No 473
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=89.41 E-value=4.4 Score=40.54 Aligned_cols=143 Identities=14% Similarity=0.002 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 266 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~ 266 (399)
+-+.+|.++|.|.|.|-... |+. +.....+-+.++=.+.+.++++..|+. |- .|.+-++.. ......
T Consensus 125 ~die~A~~~g~~~v~i~~s~--------Sd~--h~~~n~~~t~~e~l~~~~~~v~~Ak~~-Gl-~v~~~is~~-fg~p~~ 191 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASA--------SES--FSKSNINCSIEESLVRYREVALAAKKH-SI-PVRGYVSCV-VGCPIE 191 (347)
T ss_pred HHHHHHHHcCcCEEEEEEec--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CC-eEEEEEEee-ecCCcc
Confidence 44466778999998877544 222 222233445555555556666666654 32 222112210 000001
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-----CHHHHHHHHHcCCCc
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-----DREDGNKAIAEGRAD 341 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t~~~a~~~L~~G~~D 341 (399)
+..+.+...++++.+.+.|++.|.+.... +. ..+....+.++.+++.++.+.+....- -...+..+++.| +|
T Consensus 192 ~r~~~~~l~~~~~~~~~~Gad~I~l~DT~-G~-a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aG-a~ 268 (347)
T PLN02746 192 GPVPPSKVAYVAKELYDMGCYEISLGDTI-GV-GTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMG-IS 268 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCc-CC-cCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhC-CC
Confidence 23457788999999999999998875431 10 011123456777888887532333322 356667889998 77
Q ss_pred EEEe
Q 015862 342 LVVY 345 (399)
Q Consensus 342 ~V~~ 345 (399)
.|-.
T Consensus 269 ~vd~ 272 (347)
T PLN02746 269 TVDS 272 (347)
T ss_pred EEEE
Confidence 6643
No 474
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.40 E-value=2.7 Score=45.00 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC---ceEEEec
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD---RVGIRLS 257 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~---~v~vrls 257 (399)
+|+.|+ +.|.+.|.|.+.|--++ |..+-+..-++++|+. |.. .|++=.|
T Consensus 97 vv~~~v---~~a~~~Gidv~Rifd~l------------------------nd~~n~~~~i~~~k~~-G~~~~~~i~yt~s 148 (596)
T PRK14042 97 VVRAFV---KLAVNNGVDVFRVFDAL------------------------NDARNLKVAIDAIKSH-KKHAQGAICYTTS 148 (596)
T ss_pred HHHHHH---HHHHHcCCCEEEEcccC------------------------cchHHHHHHHHHHHHc-CCEEEEEEEecCC
Confidence 444443 56778999999987655 4456667788888885 433 2334334
Q ss_pred CCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCC----CCHHHHHH
Q 015862 258 PFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGG----YDREDGNK 333 (399)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg----it~~~a~~ 333 (399)
+ -.+.+...++++.|++.|++.|.+.... + ...+....+.++.+|+.+++||-.=.- +.......
T Consensus 149 p---------~~t~e~~~~~ak~l~~~Gad~I~IkDta-G-~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~la 217 (596)
T PRK14042 149 P---------VHTLDNFLELGKKLAEMGCDSIAIKDMA-G-LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYE 217 (596)
T ss_pred C---------CCCHHHHHHHHHHHHHcCCCEEEeCCcc-c-CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHH
Confidence 3 3467888999999999999998875321 1 011112345678889988888643322 23566678
Q ss_pred HHHcCCCcEE-----EechHHhhCCcH
Q 015862 334 AIAEGRADLV-----VYGRLFLANPDL 355 (399)
Q Consensus 334 ~L~~G~~D~V-----~~gR~~iadPdl 355 (399)
+++.| ||.| +||... .||.+
T Consensus 218 AieaG-ad~iD~ai~glGg~t-Gn~~t 242 (596)
T PRK14042 218 AVLAG-CNHIDTAISSFSGGA-SHPPT 242 (596)
T ss_pred HHHhC-CCEEEeccccccCCC-CcHhH
Confidence 89998 8876 344442 56643
No 475
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=89.30 E-value=1.3 Score=44.03 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEech
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGR 347 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR 347 (399)
..+.+.+.+-++.|+++|++.+-+.-++.. ....++.|++.+++|+++---|++..|.++++.| +|-|=+-=
T Consensus 38 T~Dv~atv~Qi~~L~~aGceiVRvav~~~~-------~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G-~~~iRINP 109 (360)
T PRK00366 38 TADVEATVAQIKRLARAGCEIVRVAVPDME-------AAAALPEIKKQLPVPLVADIHFDYRLALAAAEAG-ADALRINP 109 (360)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEccCCHH-------HHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhC-CCEEEECC
Confidence 345677788899999999999988655322 2456788999999999999899999999999999 99885544
Q ss_pred HHhhC
Q 015862 348 LFLAN 352 (399)
Q Consensus 348 ~~iad 352 (399)
+-+..
T Consensus 110 GNig~ 114 (360)
T PRK00366 110 GNIGK 114 (360)
T ss_pred CCCCc
Confidence 44433
No 476
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.16 E-value=3.3 Score=41.65 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=77.9
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~ 269 (399)
+.|.++|.|.|.|...- | ..++...++-+.+.-.+.+.+.++.+|+. | +.+.++..+ . ...
T Consensus 79 ~~a~~~g~~~i~i~~~~--------S--d~~~~~~~~~s~~e~l~~~~~~i~~ak~~-g---~~v~~~~ed-~----~r~ 139 (365)
T TIGR02660 79 EAAARCGVDAVHISIPV--------S--DLQIEAKLRKDRAWVLERLARLVSFARDR-G---LFVSVGGED-A----SRA 139 (365)
T ss_pred HHHHcCCcCEEEEEEcc--------C--HHHHHHHhCcCHHHHHHHHHHHHHHHHhC-C---CEEEEeecC-C----CCC
Confidence 45678899998877543 1 12333445555555455566666666553 3 345566532 1 233
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC--CC--CHHHHHHHHHcCCCcEE
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG--GY--DREDGNKAIAEGRADLV 343 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--gi--t~~~a~~~L~~G~~D~V 343 (399)
+.+...++++.+.++|++.|.+.... +. ..+....+.++.+++.+++|+-.=+ .+ ....+..+++.| ||.|
T Consensus 140 ~~~~l~~~~~~~~~~Ga~~i~l~DT~-G~-~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aG-a~~v 214 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGADRFRFADTV-GI-LDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAG-ATHV 214 (365)
T ss_pred CHHHHHHHHHHHHHcCcCEEEEcccC-CC-CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhC-CCEE
Confidence 57778999999999999998875321 10 0111233466778887777653222 12 245567788888 7755
No 477
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=89.02 E-value=6.6 Score=35.82 Aligned_cols=114 Identities=20% Similarity=0.168 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHH-HHHHHHHHHHhCC--CceEEEecCCccc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFA-LEIVEAVSNEIGA--DRVGIRLSPFANY 262 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~-~eii~avR~~vg~--~~v~vrls~~~~~ 262 (399)
.+.|+.|.++|.|.|.+-.-. .| .|.+ .+..+.+++.+.+ ..|+|=++.
T Consensus 9 ~ed~~~a~~~Gvd~ig~i~~~-------~s-----------------~R~v~~~~a~~l~~~~~~~~~~V~v~vn~---- 60 (203)
T cd00405 9 LEDALAAAEAGADAIGFIFAP-------KS-----------------PRYVSPEQAREIVAALPPFVKRVGVFVNE---- 60 (203)
T ss_pred HHHHHHHHHcCCCEEEEecCC-------CC-----------------CCCCCHHHHHHHHHhCCCCCcEEEEEeCC----
Confidence 345677889999999976322 01 2334 6777777877765 345553332
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCCC-CHHHH--HHHHHcCC
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGGY-DREDG--NKAIAEGR 339 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a--~~~L~~G~ 339 (399)
+.++..++ +.+.++|++|+|... ....++.+|+.++.+++-+=++ +..+. .+....+
T Consensus 61 -------~~~~i~~i---a~~~~~d~Vqlhg~e---------~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~- 120 (203)
T cd00405 61 -------DLEEILEI---AEELGLDVVQLHGDE---------SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGE- 120 (203)
T ss_pred -------CHHHHHHH---HHhcCCCEEEECCCC---------CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhcccc-
Confidence 23433344 446789999987431 1346777888776665533233 33222 2333344
Q ss_pred CcEEEech
Q 015862 340 ADLVVYGR 347 (399)
Q Consensus 340 ~D~V~~gR 347 (399)
+|++.+-.
T Consensus 121 aD~il~dt 128 (203)
T cd00405 121 VDAILLDS 128 (203)
T ss_pred CCEEEEcC
Confidence 99997643
No 478
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=88.97 E-value=8.9 Score=37.74 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=79.5
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc-cCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN-YMESG 266 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~-~~~~~ 266 (399)
.+++.++.|.|+|++-.= -|.|+=----+-+..|+.+|.+.+++.-= +..+-+-.++. ..+..
T Consensus 110 S~~rike~GadavK~Lly--------------y~pD~~~~in~~k~a~vervg~eC~a~di--pf~lE~ltY~~~~~d~~ 173 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLY--------------YDVDEPDEINEQKKAYIERIGSECVAEDI--PFFLEILTYDEKIADNG 173 (324)
T ss_pred hHHHHHHhCCCeEEEEEE--------------ECCCCCHHHHHHHHHHHHHHHHHHHHCCC--CeEEEEeeccCcccccc
Confidence 678899999999997632 34442111112234466666666666421 33333322211 11000
Q ss_pred CC----ChHHHHHHHHHhhh--hhCceEEEEeCCCcccc---cccC----CCchhhHHH---HhhcCCc-EEEeCCCCHH
Q 015862 267 DS----NPEALGLYMAESLN--KYGILYCHMVEPRMKTR---EEKS----ECPHSLLPM---RKAFKGT-FLVAGGYDRE 329 (399)
Q Consensus 267 ~~----~~~~~~~~l~~~Le--~~Gvd~l~v~~~~~~~~---~~~~----~~~~~~~~i---r~~~~~p-vi~~Ggit~~ 329 (399)
+. .-.+..++.++.+. ..|+|.+-|--|..... .... ...+..+.+ ..+.++| |+.+.|.+.+
T Consensus 174 ~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~~~ 253 (324)
T PRK12399 174 SVEYAKVKPHKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVSAE 253 (324)
T ss_pred cHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCCHH
Confidence 00 01333455677774 47999988755432100 0100 011222233 4446788 7888899766
Q ss_pred HHHHHH----HcCCC--cEEEechHHhhCC
Q 015862 330 DGNKAI----AEGRA--DLVVYGRLFLANP 353 (399)
Q Consensus 330 ~a~~~L----~~G~~--D~V~~gR~~iadP 353 (399)
...+.| +.| + -.|..||+.-.|+
T Consensus 254 ~F~~~l~~A~~aG-a~fsGvL~GRAtW~~~ 282 (324)
T PRK12399 254 LFQETLVFAHEAG-AKFNGVLCGRATWAGS 282 (324)
T ss_pred HHHHHHHHHHHcC-CCcceEEeehhhhHhh
Confidence 655443 455 5 6999999998876
No 479
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=88.96 E-value=13 Score=38.07 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc-eEEEecCCcc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR-VGIRLSPFAN 261 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~-v~vrls~~~~ 261 (399)
++|++.|......|.|.|+ . -++ |-+|=++| ++.|.+.+.+.+++..+++|... ..+=++.
T Consensus 160 ~~~a~~~~~~~~GGvD~IK-D-DE~-l~~q~~~p------------~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~--- 221 (412)
T TIGR03326 160 EEHAKVAYELWSGGVDLLK-D-DEN-LTSQPFNR------------FEERVEKLYKVRDKVEAETGERKEYLANITA--- 221 (412)
T ss_pred HHHHHHHHHHHhcCCceee-c-CCC-CCCCCCcc------------HHHHHHHHHHHHHHHHHHhCCcceEEEEecC---
Confidence 4567788888899999997 1 121 33333333 68999999999999999999742 2433332
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHh---hcCCcEEE------------eCCC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRK---AFKGTFLV------------AGGY 326 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~---~~~~pvi~------------~Ggi 326 (399)
+.++..+-++.+.+.|...+.+.-... -+..+..+++ ..+.||.+ .-|+
T Consensus 222 --------~~~em~~ra~~~~~~G~~~~mv~~~~~--------G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gi 285 (412)
T TIGR03326 222 --------PVREMERRAELVADLGGQYVMVDVVVC--------GWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGI 285 (412)
T ss_pred --------CHHHHHHHHHHHHHhCCCeEEEEeecc--------chHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcC
Confidence 246678888888889987776542211 1223445554 34566553 1244
Q ss_pred CHHHHHHHHHcCCCcEEEechH
Q 015862 327 DREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 327 t~~~a~~~L~~G~~D~V~~gR~ 348 (399)
+....-++.+--++|.+.++-.
T Consensus 286 s~~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 286 SMFALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cHHHHHHHHHHcCCCeeeeCCC
Confidence 4444456666444888887666
No 480
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.82 E-value=18 Score=35.03 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=75.5
Q ss_pred CCHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHH
Q 015862 101 WTKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQ 180 (399)
Q Consensus 101 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~ 180 (399)
..++.++.++++++.++++|..+.+.+.+.|. | + ..+
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~---------------~------------------~----r~~------ 145 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGIEVNIYLEDWSN---------------G------------------M----RDS------ 145 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC---------------C------------------C----cCC------
Confidence 34788899999999999999888888765321 0 0 001
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCc
Q 015862 181 IVNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFA 260 (399)
Q Consensus 181 ii~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~ 260 (399)
.+.+.+.++.+.++|.|.|-|--.-| -.. +.-+.++++++|+.++.-+|++-..-
T Consensus 146 -~~~~~~~~~~~~~~G~~~i~l~DT~G-------------------~~~---P~~v~~l~~~l~~~~~~~~i~~H~Hn-- 200 (280)
T cd07945 146 -PDYVFQLVDFLSDLPIKRIMLPDTLG-------------------ILS---PFETYTYISDMVKRYPNLHFDFHAHN-- 200 (280)
T ss_pred -HHHHHHHHHHHHHcCCCEEEecCCCC-------------------CCC---HHHHHHHHHHHHhhCCCCeEEEEeCC--
Confidence 13467777888899999988664443 222 22368899999988864366664442
Q ss_pred ccCCCCCCChHHHHHHHHHhh--hhhCceEEEEeCCCcc
Q 015862 261 NYMESGDSNPEALGLYMAESL--NKYGILYCHMVEPRMK 297 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~L--e~~Gvd~l~v~~~~~~ 297 (399)
++ ...++..| -++|+++++.+-...+
T Consensus 201 d~-----------Gla~AN~laA~~aGa~~vd~s~~GlG 228 (280)
T cd07945 201 DY-----------DLAVANVLAAVKAGIKGLHTTVNGLG 228 (280)
T ss_pred CC-----------CHHHHHHHHHHHhCCCEEEEeccccc
Confidence 11 11223332 4679999997755444
No 481
>PLN02363 phosphoribosylanthranilate isomerase
Probab=88.66 E-value=15 Score=35.10 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.1
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEEechHHhhCC
Q 015862 317 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANP 353 (399)
Q Consensus 317 ~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~iadP 353 (399)
..|++..||++++...++++.-...+|=+..++=..|
T Consensus 199 ~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE~~p 235 (256)
T PLN02363 199 RNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGICGPD 235 (256)
T ss_pred CCCEEEECCCCHHHHHHHHHhcCCcEEEeCCcccCCC
Confidence 4589999999999999999865566666666654444
No 482
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=88.66 E-value=7.8 Score=38.53 Aligned_cols=154 Identities=18% Similarity=0.080 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCccc-CCCCCCCCchhhhhHH----HHHHHHHHHHHhCCCceEEEecCCc
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVN-DRTDQYGGSLENRCRF----ALEIVEAVSNEIGADRVGIRLSPFA 260 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N-~R~D~yGGslenR~r~----~~eii~avR~~vg~~~v~vrls~~~ 260 (399)
++..+...++||.+|++..-.- -.|--.|... .|..+ ..++.|++-| +...++.+++.--..+|+|-++.+.
T Consensus 69 ~~~~~~~~~~G~Gavv~kTvt~--~p~~gn~~Pr~~~~~~-~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~~~ 145 (335)
T TIGR01036 69 GEAIDALGAMGFGFLEIGTVTP--KPQPGNPRPRLFRLIE-DEALINRMGFNNHGADVLVERLKRARYKGPIGINIGKNK 145 (335)
T ss_pred HHHHHHHHhcCCCEEEeCCcCC--CCCCCCCCCCEEECcc-ccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeCCC
Confidence 5666777788999999875431 0111111100 12211 1344555544 4445555555211126777775432
Q ss_pred ccCCCCCCChHHHHHHHHHhhhhhCceEEEE--eCCCccccc-c--cCCCchhhHHHHhhcC-------CcEEEe--CCC
Q 015862 261 NYMESGDSNPEALGLYMAESLNKYGILYCHM--VEPRMKTRE-E--KSECPHSLLPMRKAFK-------GTFLVA--GGY 326 (399)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v--~~~~~~~~~-~--~~~~~~~~~~ir~~~~-------~pvi~~--Ggi 326 (399)
... .....+++.+.++.+.+ .+|++++ +-|...... . .....+.++.+|+.++ +||++= -.+
T Consensus 146 ~~~---~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~ 221 (335)
T TIGR01036 146 DTP---SEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDL 221 (335)
T ss_pred CCC---cccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCC
Confidence 110 12246777778887766 3899876 333221000 0 0011235666777765 887643 234
Q ss_pred C---HHHH-HHHHHcCCCcEEEech
Q 015862 327 D---REDG-NKAIAEGRADLVVYGR 347 (399)
Q Consensus 327 t---~~~a-~~~L~~G~~D~V~~gR 347 (399)
+ .... +.+.+.| +|.|.+.=
T Consensus 222 ~~~~i~~ia~~~~~~G-adGi~l~N 245 (335)
T TIGR01036 222 TESDLEDIADSLVELG-IDGVIATN 245 (335)
T ss_pred CHHHHHHHHHHHHHhC-CcEEEEEC
Confidence 4 3333 4455555 99888643
No 483
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.48 E-value=4.6 Score=38.48 Aligned_cols=132 Identities=12% Similarity=0.070 Sum_probs=78.0
Q ss_pred HHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCCCC
Q 015862 190 RNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSN 269 (399)
Q Consensus 190 ~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~~~ 269 (399)
.+|.++|.|.|.+.... |+. +....++-+.+.=.+.+.+.++.+|+. | +.++++..+ ....
T Consensus 76 ~~a~~~g~~~i~i~~~~--------s~~--~~~~~~~~~~~~~~~~~~~~i~~a~~~-G---~~v~~~~~~-----~~~~ 136 (259)
T cd07939 76 EAALRCGVTAVHISIPV--------SDI--HLAHKLGKDRAWVLDQLRRLVGRAKDR-G---LFVSVGAED-----ASRA 136 (259)
T ss_pred HHHHhCCcCEEEEEEec--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEeecc-----CCCC
Confidence 56778999999887533 111 112233445554455556666666654 2 244555422 1134
Q ss_pred hHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCC--C--CHHHHHHHHHcCCCcEE
Q 015862 270 PEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGG--Y--DREDGNKAIAEGRADLV 343 (399)
Q Consensus 270 ~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg--i--t~~~a~~~L~~G~~D~V 343 (399)
+.+...++++.+.+.|++.|.+.... +.. .+....+.++.+|+.+++|+-.=+- + ....+..+++.| +|.|
T Consensus 137 ~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~-~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG-~~~v 211 (259)
T cd07939 137 DPDFLIEFAEVAQEAGADRLRFADTV-GIL-DPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAG-ATHV 211 (259)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCCCC-CCC-CHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhC-CCEE
Confidence 57788999999999999988775321 110 1112334677788888866532221 2 356677889998 7755
No 484
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.37 E-value=15 Score=34.26 Aligned_cols=112 Identities=19% Similarity=0.096 Sum_probs=70.6
Q ss_pred CHHHHhhhHHHHHHHHHcCCeEEEecccCCCccCCCCCCCCCCCcccCCCCCCcccccCCCcccCCCCCCCCChhHHHHH
Q 015862 102 TKEQVEAWKPIVDAVHAKGGIFFCQIRHVGRVSNRDYQPNGQAPISCTDKPLTPQIRANGVDVAQFTPPRRLRTDEIPQI 181 (399)
Q Consensus 102 ~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~~~~~~aps~~~~~~~~~~~g~~~~~~~~p~~mt~~eI~~i 181 (399)
.++..+.++++.+.+|++|.++++...--|- ..+..++.+
T Consensus 104 ~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~-----------------------------------~~~~~~~~~----- 143 (235)
T cd00958 104 EREMLEELARVAAEAHKYGLPLIAWMYPRGP-----------------------------------AVKNEKDPD----- 143 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeccCC-----------------------------------cccCccCHH-----
Confidence 4677889999999999999999986531110 001123332
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcc
Q 015862 182 VNDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFAN 261 (399)
Q Consensus 182 i~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~ 261 (399)
...++++.|.++|+|.|.+.. + + . .+.++++.+.++- || -++..
T Consensus 144 --~i~~~~~~a~~~GaD~Ik~~~-----------~---------~-~--------~~~~~~i~~~~~~-pv--v~~GG-- 187 (235)
T cd00958 144 --LIAYAARIGAELGADIVKTKY-----------T---------G-D--------AESFKEVVEGCPV-PV--VIAGG-- 187 (235)
T ss_pred --HHHHHHHHHHHHCCCEEEecC-----------C---------C-C--------HHHHHHHHhcCCC-CE--EEeCC--
Confidence 334558888899999999841 0 0 1 4556666666532 44 22221
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeC
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVE 293 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~ 293 (399)
....+.+++.+.++.+.+.|++.+.+..
T Consensus 188 ----~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 188 ----PKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred ----CCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 0123567778888888899999887643
No 485
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=88.37 E-value=3.1 Score=40.12 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEE
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIR 255 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vr 255 (399)
+.++.|..|.+||+..|-|| -|+|+-| ..........|++++||+++++-+|.+-
T Consensus 27 Eia~~A~~c~~AGAa~vH~H----------------~R~~~~G-~~s~d~~~~~e~~~~IR~~~pd~iv~~T 81 (272)
T PF05853_consen 27 EIAADAVACYEAGAAIVHIH----------------ARDDEDG-RPSLDPELYAEVVEAIRAACPDLIVQPT 81 (272)
T ss_dssp HHHHHHHHHHHHTESEEEE-----------------EE-TTTS--EE--HHHHHHHHHHHHHHSTTSEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEee----------------cCCCCCC-CcCCCHHHHHHHHHHHHHHCCCeEEEeC
Confidence 34889999999999999999 3533333 3455678899999999999764345543
No 486
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.35 E-value=5.2 Score=38.75 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=78.8
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGD 267 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~~ 267 (399)
.+.+|.++|++.|.|-... |+. +.+..++-+.+.=...+.++++..|+. | +.|+++.. ++ +...
T Consensus 79 ~~~~A~~~g~~~i~i~~~~--------S~~--h~~~~~~~t~~e~l~~~~~~i~~a~~~-G---~~v~~~~~-d~-~~~~ 142 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKG--------SLK--HCTEQLRKTPEEHFADIREVIEYAIKN-G---IEVNIYLE-DW-SNGM 142 (280)
T ss_pred HHHHHHHCCCCEEEEEEeC--------CHH--HHHHHHCcCHHHHHHHHHHHHHHHHhC-C---CEEEEEEE-eC-CCCC
Confidence 4677889999998877543 222 223333444454444555555555553 2 34445542 22 1111
Q ss_pred CChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeC--CC--CHHHHHHHHHcCCCcE
Q 015862 268 SNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAG--GY--DREDGNKAIAEGRADL 342 (399)
Q Consensus 268 ~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G--gi--t~~~a~~~L~~G~~D~ 342 (399)
..+.+...++++.+.+.|++.|.+.... +. ..+....+.++.+++.++ +|+-.=. .+ -...+..+++.| +|.
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~i~l~DT~-G~-~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aG-a~~ 219 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKRIMLPDTL-GI-LSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAG-IKG 219 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCC-CC-CCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhC-CCE
Confidence 3356788999999999999998875431 11 011123456777887775 5542221 12 245667889998 776
Q ss_pred EE
Q 015862 343 VV 344 (399)
Q Consensus 343 V~ 344 (399)
|-
T Consensus 220 vd 221 (280)
T cd07945 220 LH 221 (280)
T ss_pred EE
Confidence 53
No 487
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=88.30 E-value=29 Score=34.57 Aligned_cols=88 Identities=17% Similarity=0.029 Sum_probs=57.5
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhCceEEEEeCC---CcccccccCCCchhhHHHHhhcCCcEEEeCC--
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEP---RMKTREEKSECPHSLLPMRKAFKGTFLVAGG-- 325 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~---~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg-- 325 (399)
||.++-+. ..++++....++.+...|-.-+.+.++ ++........++..+..+|+.+..||++.-+
T Consensus 202 PViLk~G~---------~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~ 272 (335)
T PRK08673 202 PVLLKRGM---------SATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHA 272 (335)
T ss_pred cEEEeCCC---------CCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCC
Confidence 88887654 235777888888888888655555543 2211112223445677788888999876422
Q ss_pred --C---CHHHHHHHHHcCCCcEEEechH
Q 015862 326 --Y---DREDGNKAIAEGRADLVVYGRL 348 (399)
Q Consensus 326 --i---t~~~a~~~L~~G~~D~V~~gR~ 348 (399)
. -+..+..++.-| +|.+++-.-
T Consensus 273 ~G~~~~v~~~a~AAvA~G-AdGliIE~H 299 (335)
T PRK08673 273 TGKRDLVEPLALAAVAAG-ADGLIVEVH 299 (335)
T ss_pred CccccchHHHHHHHHHhC-CCEEEEEec
Confidence 2 257788999999 998877644
No 488
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=88.29 E-value=6.9 Score=34.30 Aligned_cols=133 Identities=20% Similarity=0.071 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCccc
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANY 262 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~ 262 (399)
+.+.+.++.+.+.|+|.|++-... .++..+ ++.. .+++..+++..+ .++.+-+...+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~-------~~~~~~-~~~~------------~~~~~~~~~~~~-~~~~~~~~~~~-- 68 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRS-------SDPEEA-ETDD------------KEVLKEVAAETD-LPLGVQLAIND-- 68 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEE-------ECcccC-CCcc------------ccHHHHHHhhcC-CcEEEEEccCC--
Confidence 445666777788899999976432 112111 1110 155666666654 25555544321
Q ss_pred CCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCC-C-HHHHHHHHHcCC
Q 015862 263 MESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGY-D-REDGNKAIAEGR 339 (399)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi-t-~~~a~~~L~~G~ 339 (399)
..+.....++.+.+.|+|+|+++...... .....+.++.+++.+ +.+++..-.. + .+.+ .+.+.|
T Consensus 69 -------~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-~~~~~g- 136 (200)
T cd04722 69 -------AAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAVPDVKVVVKLSPTGELAAA-AAEEAG- 136 (200)
T ss_pred -------chhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-hHHHcC-
Confidence 11111223567788899999987542110 001235677888887 6776555433 2 2222 134455
Q ss_pred CcEEEechHHh
Q 015862 340 ADLVVYGRLFL 350 (399)
Q Consensus 340 ~D~V~~gR~~i 350 (399)
+|+|.+.....
T Consensus 137 ~d~i~~~~~~~ 147 (200)
T cd04722 137 VDEVGLGNGGG 147 (200)
T ss_pred CCEEEEcCCcC
Confidence 99998866544
No 489
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.23 E-value=7.9 Score=38.81 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=38.6
Q ss_pred CchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEe----chHHhhCC
Q 015862 305 CPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY----GRLFLANP 353 (399)
Q Consensus 305 ~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~----gR~~iadP 353 (399)
.|+.++++|+.+++||++-|-.++++|+.+++.| +|.|.+ ||.+-.-|
T Consensus 209 ~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 209 SPADIEFIAKISGLPVIVKGIQSPEDADVAINAG-ADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred CHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcC-CCEEEEeCCCCccCCCCc
Confidence 4566788999999999988755999999999998 999988 55543333
No 490
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=88.16 E-value=6 Score=39.87 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=36.0
Q ss_pred CchhhHHHHhhcCCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 305 CPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 305 ~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
.|+.++++|+.+++||++=|-.++++|+.+++.| +|.|.++
T Consensus 212 tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~G-vd~I~Vs 252 (367)
T PLN02493 212 SWKDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIVS 252 (367)
T ss_pred CHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcC-CCEEEEC
Confidence 4567889999999999888888999999999999 9988774
No 491
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=88.07 E-value=1.1 Score=45.17 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeCC-CCHHHHHHHHHcCCCcE--EEechHH
Q 015862 273 LGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAGG-YDREDGNKAIAEGRADL--VVYGRLF 349 (399)
Q Consensus 273 ~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg-it~~~a~~~L~~G~~D~--V~~gR~~ 349 (399)
+..+-...|.++|+|+|-+....- ......+.++.||+.++..-+..|+ +|.++|+.+|..| +|. |+||-+-
T Consensus 251 ~dK~rl~ll~~aGvdvviLDSSqG----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aG-aDgLrVGMGsGS 325 (503)
T KOG2550|consen 251 DDKERLDLLVQAGVDVVILDSSQG----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAG-ADGLRVGMGSGS 325 (503)
T ss_pred chhHHHHHhhhcCCcEEEEecCCC----cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHcc-CceeEeccccCc
Confidence 345566678899999987643311 1123567889999999855444455 4999999999999 996 5555554
Q ss_pred hh
Q 015862 350 LA 351 (399)
Q Consensus 350 ia 351 (399)
++
T Consensus 326 iC 327 (503)
T KOG2550|consen 326 IC 327 (503)
T ss_pred ee
Confidence 44
No 492
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=88.04 E-value=7.7 Score=37.39 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=82.5
Q ss_pred HHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC-ceEE--EecCCcccCC
Q 015862 188 AARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGI--RLSPFANYME 264 (399)
Q Consensus 188 aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~-~v~v--rls~~~~~~~ 264 (399)
..++|.++|.|.|.|-... | -.++...++-+.++-...+.+.++..|+. |-. .+.+ -++. .+
T Consensus 78 dv~~A~~~g~~~i~i~~~~--------S--d~~~~~~~~~s~~~~~~~~~~~v~~ak~~-G~~v~~~i~~~f~~--~~-- 142 (274)
T cd07938 78 GAERALAAGVDEVAVFVSA--------S--ETFSQKNINCSIAESLERFEPVAELAKAA-GLRVRGYVSTAFGC--PY-- 142 (274)
T ss_pred HHHHHHHcCcCEEEEEEec--------C--HHHHHHHcCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeEecC--CC--
Confidence 4577888999998776443 1 12334445566666667777777777775 222 1222 2222 11
Q ss_pred CCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeCC--C--CHHHHHHHHHcCC
Q 015862 265 SGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAGG--Y--DREDGNKAIAEGR 339 (399)
Q Consensus 265 ~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Gg--i--t~~~a~~~L~~G~ 339 (399)
.+..+.+...++++.+.+.|++.|.+.... +. ..+....+.++.+|+.++ +|+-.=+- + -...+..+++.|
T Consensus 143 -~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~-~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aG- 218 (274)
T cd07938 143 -EGEVPPERVAEVAERLLDLGCDEISLGDTI-GV-ATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAG- 218 (274)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCEEEECCCC-Cc-cCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhC-
Confidence 113357778899999999999998875431 11 011123456778888875 66433221 2 356677899998
Q ss_pred CcEEE
Q 015862 340 ADLVV 344 (399)
Q Consensus 340 ~D~V~ 344 (399)
+|.|-
T Consensus 219 a~~id 223 (274)
T cd07938 219 VRRFD 223 (274)
T ss_pred CCEEE
Confidence 77664
No 493
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=87.99 E-value=4.6 Score=37.51 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCc--eEEEecCCcc
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADR--VGIRLSPFAN 261 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~--v~vrls~~~~ 261 (399)
+..+.+..+...|+|.|||..-+ +.. .-...+.+.+..+|+.++ .| +.+|-...
T Consensus 11 ~~~~~~~~~~~~~~D~vElRlD~------------------l~~---~~~~~~~~~l~~lr~~~~-~piI~T~R~~~e-- 66 (224)
T PF01487_consen 11 ELLAELEEAESSGADAVELRLDY------------------LEN---DSAEDISEQLAELRRSLD-LPIIFTVRTKEE-- 66 (224)
T ss_dssp HHHHHHHHHHHTTTSEEEEEGGG------------------STT---TSHHHHHHHHHHHHHHCT-SEEEEE--BGGG--
T ss_pred HHHHHHHHHHhcCCCEEEEEecc------------------ccc---cChHHHHHHHHHHHHhCC-CCEEEEeccccc--
Confidence 33444556666699999977543 222 123466889999999883 34 46665431
Q ss_pred cCCCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhh--HHHHhhcCCcEEEeC-CC--CHH--HH---
Q 015862 262 YMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSL--LPMRKAFKGTFLVAG-GY--DRE--DG--- 331 (399)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~--~~ir~~~~~pvi~~G-gi--t~~--~a--- 331 (399)
++....+.++..++.+.+.+.|++|+.|..... .+.. ....+.-+..||++- .+ ||. +.
T Consensus 67 --GG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~---------~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~ 135 (224)
T PF01487_consen 67 --GGRFQGSEEEYLELLERAIRLGPDYIDIELDLF---------PDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIEL 135 (224)
T ss_dssp --TSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCC---------HHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHH
T ss_pred --CCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccc---------hhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHH
Confidence 111233556778888888899999999842211 1111 222233456666553 34 332 22
Q ss_pred -HHHHHcCCCcEEEechHHh
Q 015862 332 -NKAIAEGRADLVVYGRLFL 350 (399)
Q Consensus 332 -~~~L~~G~~D~V~~gR~~i 350 (399)
+++.+.| ||+|=++...-
T Consensus 136 ~~~~~~~g-adivKia~~~~ 154 (224)
T PF01487_consen 136 LEEMQELG-ADIVKIAVMAN 154 (224)
T ss_dssp HHHHHHTT--SEEEEEEE-S
T ss_pred HHHHHhcC-CCeEEEEeccC
Confidence 3444455 88877766543
No 494
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.91 E-value=1.5 Score=45.80 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=49.9
Q ss_pred HHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEEec
Q 015862 274 GLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYG 346 (399)
Q Consensus 274 ~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 346 (399)
..+.++.|.++|++.+.+.... .. .....+.++.+|+.+ ++||++.+..|.+++..+++.| +|+|.+|
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~-g~---~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG-ad~i~vg 297 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAH-GH---SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG-ADAVKVG 297 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCC-Cc---chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC-CCEEEEC
Confidence 4677888889999988654221 11 112446788899888 6888885555999999999998 9999664
No 495
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.85 E-value=4.3 Score=40.84 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCCC
Q 015862 187 LAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 266 (399)
Q Consensus 187 ~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~~ 266 (399)
+..++|.++|.|.|.|..+- |+. +....++-+.+.-.+.+.+.++.+|+ .-+.|.++..+ .
T Consensus 75 ~di~~a~~~g~~~i~i~~~~--------Sd~--~~~~~~~~~~~~~~~~~~~~i~~ak~----~G~~v~~~~ed-----a 135 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIAT--------SPI--HLKYKLKKSRDEVLEKAVEAVEYAKE----HGLIVEFSAED-----A 135 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHH----cCCEEEEEEee-----c
Q ss_pred CCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCcEEEeC----CCCHHHHHHHHHcCCCcE
Q 015862 267 DSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGTFLVAG----GYDREDGNKAIAEGRADL 342 (399)
Q Consensus 267 ~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~L~~G~~D~ 342 (399)
...+.+...++++.+.+.|++.|.+....-.. .+....+.++.+++.+++|+-.=+ |+....+..+++.| +|.
T Consensus 136 ~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~--~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aG-a~~ 212 (363)
T TIGR02090 136 TRTDIDFLIKVFKRAEEAGADRINIADTVGVL--TPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAG-AEQ 212 (363)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCcc--CHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCC-CCE
Q ss_pred E
Q 015862 343 V 343 (399)
Q Consensus 343 V 343 (399)
|
T Consensus 213 v 213 (363)
T TIGR02090 213 V 213 (363)
T ss_pred E
No 496
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=87.82 E-value=16 Score=34.58 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC--C-ceEEEecCC
Q 015862 183 NDFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGA--D-RVGIRLSPF 259 (399)
Q Consensus 183 ~~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~--~-~v~vrls~~ 259 (399)
..|-+--+.|++.|||.|||..|-- + =+.+.|+| +|+.+++. |- - .++.|....
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~-------~-----------i~~~~~~r----lI~~~~~~-g~~v~~EvG~K~~~~ 127 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSM-------E-----------ISLEERCN----LIERAKDN-GFMVLSEVGKKSPEK 127 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCcc-------C-----------CCHHHHHH----HHHHHHhC-CCeEeccccccCCcc
Confidence 4555556788899999999997641 0 12233333 33333332 10 0 255554311
Q ss_pred cccCCCCCCChHHHHHHHHHhhhhhCceEEEEeC
Q 015862 260 ANYMESGDSNPEALGLYMAESLNKYGILYCHMVE 293 (399)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~ 293 (399)
+ ...+.++.+..++..-++|+++|-+-+
T Consensus 128 -~-----~~~~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 128 -D-----SELTPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred -c-----ccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 0 123556677778777899999987754
No 497
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=87.79 E-value=9.6 Score=35.36 Aligned_cols=108 Identities=21% Similarity=0.161 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCC--ceEEEecCCcccC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD--RVGIRLSPFANYM 263 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~--~v~vrls~~~~~~ 263 (399)
.+....|.+.|.+.|++-.= +.+-+.+ .+..+++|+.|... ++.| +.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K--------------------~~~~~~~----~~~a~~~~~lc~~~~v~liI--Nd----- 72 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREK--------------------DLSDEEY----LALAEKLRALCQKYGVPLII--ND----- 72 (211)
T ss_pred HHHHHHHHhCCCeEEEEecC--------------------CCChHHH----HHHHHHHHHHHHHhCCeEEe--cC-----
Confidence 56667888999999996521 1222222 45555566655433 3443 21
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcCCc-EEEeCCCCHHHHHHHHHcCCCcE
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFKGT-FLVAGGYDREDGNKAIAEGRADL 342 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~~a~~~L~~G~~D~ 342 (399)
. +++|. +.++|.+|+.... ......++.++-. +++.+-.+.++++++.+.| +|+
T Consensus 73 ------~----~dlA~---~~~AdGVHlGq~D-----------~~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g-~DY 127 (211)
T COG0352 73 ------R----VDLAL---AVGADGVHLGQDD-----------MPLAEARELLGPGLIIGLSTHDLEEALEAEELG-ADY 127 (211)
T ss_pred ------c----HHHHH---hCCCCEEEcCCcc-----------cchHHHHHhcCCCCEEEeecCCHHHHHHHHhcC-CCE
Confidence 1 23443 5688999974321 1234466666544 4444444999999999999 999
Q ss_pred EEechHH
Q 015862 343 VVYGRLF 349 (399)
Q Consensus 343 V~~gR~~ 349 (399)
|++|.=+
T Consensus 128 v~~Gpif 134 (211)
T COG0352 128 VGLGPIF 134 (211)
T ss_pred EEECCcC
Confidence 9999654
No 498
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.73 E-value=4.8 Score=37.97 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccCCC
Q 015862 186 RLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMES 265 (399)
Q Consensus 186 ~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~~~ 265 (399)
.+.++++.++|+|.|.|-..--- ++..-.++-+.+.....+.+.++.+|+. | +.+.++... ....
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~----------~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G---~~v~~~~~~-~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE----------THSRKNLNKSREEDLENAEEAIEAAKEA-G---LEVEGSLED-AFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH----------HHHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEEEe-ecCC
Confidence 44567888999999998765321 1112223444455555566666666654 2 222222211 0000
Q ss_pred CCCChHHHHHHHHHhhhhhCceEEEEeCCCcccccccCCCchhhHHHHhhcC-CcEEEeC----CCCHHHHHHHHHcCCC
Q 015862 266 GDSNPEALGLYMAESLNKYGILYCHMVEPRMKTREEKSECPHSLLPMRKAFK-GTFLVAG----GYDREDGNKAIAEGRA 340 (399)
Q Consensus 266 ~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G----git~~~a~~~L~~G~~ 340 (399)
..+.++..++++.+.+.|++.|.+... .+. ..+......++.+++.++ +++-.=+ |+-...+..+++.| |
T Consensus 142 --~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~-~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG-~ 216 (265)
T cd03174 142 --KTDPEYVLEVAKALEEAGADEISLKDT-VGL-ATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAG-A 216 (265)
T ss_pred --CCCHHHHHHHHHHHHHcCCCEEEechh-cCC-cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcC-C
Confidence 145677888999999999999887432 111 111123356778888887 6654333 22366778899998 7
Q ss_pred cEEEe
Q 015862 341 DLVVY 345 (399)
Q Consensus 341 D~V~~ 345 (399)
|.|-.
T Consensus 217 ~~id~ 221 (265)
T cd03174 217 DRVDG 221 (265)
T ss_pred CEEEe
Confidence 76643
No 499
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=87.64 E-value=27 Score=33.55 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCEEEEccccchhhhhcccCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCCceEEEecCCcccC
Q 015862 184 DFRLAARNAIEAGFDGVELHGAHGYLIDQFLKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYM 263 (399)
Q Consensus 184 ~f~~aA~~a~~aGfDgVeIh~~~GyLl~qFlSp~~N~R~D~yGGslenR~r~~~eii~avR~~vg~~~v~vrls~~~~~~ 263 (399)
.+.+.++.+.++|+|.|-|.-.- |... +.-+.++++++|++++ -+|++-..- ++
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~-------------------G~~~---P~~v~~lv~~l~~~~~-~~l~~H~Hn--d~- 203 (275)
T cd07937 150 YYVKLAKELEDMGADSICIKDMA-------------------GLLT---PYAAYELVKALKKEVG-LPIHLHTHD--TS- 203 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC-------------------CCCC---HHHHHHHHHHHHHhCC-CeEEEEecC--CC-
Confidence 46777888899999999876443 4332 3456899999999986 356654432 11
Q ss_pred CCCCCChHHHHHHHHHhhhhhCceEEEEeCCCcc
Q 015862 264 ESGDSNPEALGLYMAESLNKYGILYCHMVEPRMK 297 (399)
Q Consensus 264 ~~~~~~~~~~~~~l~~~Le~~Gvd~l~v~~~~~~ 297 (399)
+.... -+....++|+++++.+-...+
T Consensus 204 ----GlA~a----N~laA~~aGa~~vd~sv~GlG 229 (275)
T cd07937 204 ----GLAVA----TYLAAAEAGVDIVDTAISPLS 229 (275)
T ss_pred ----ChHHH----HHHHHHHhCCCEEEEeccccc
Confidence 11111 111223579999998755444
No 500
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=87.49 E-value=13 Score=35.98 Aligned_cols=85 Identities=13% Similarity=-0.002 Sum_probs=48.9
Q ss_pred ceEEEecCCcccCCCCCCChHHHHHHHHHhhhhhC--ceEEEEeCC--Cccccc----cc-CCCchhhHHHHhhcCCcEE
Q 015862 251 RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYG--ILYCHMVEP--RMKTRE----EK-SECPHSLLPMRKAFKGTFL 321 (399)
Q Consensus 251 ~v~vrls~~~~~~~~~~~~~~~~~~~l~~~Le~~G--vd~l~v~~~--~~~~~~----~~-~~~~~~~~~ir~~~~~pvi 321 (399)
+|.+-|.. .+.++..+.++.+++++ +|++++--+ ...... .. ....+.++.+|+.++.||.
T Consensus 92 pl~~qi~g----------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~ 161 (300)
T TIGR01037 92 PLIASVYG----------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVF 161 (300)
T ss_pred cEEEEeec----------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 67766643 24577888999998763 888877422 111000 00 0113457778888888876
Q ss_pred EeCC--C-CHHHHHHHHHcCCCcEEEe
Q 015862 322 VAGG--Y-DREDGNKAIAEGRADLVVY 345 (399)
Q Consensus 322 ~~Gg--i-t~~~a~~~L~~G~~D~V~~ 345 (399)
+=-+ + +.....+.+++..+|+|.+
T Consensus 162 vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 162 AKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred EECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 5443 3 2223334444444999987
Done!