BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015865
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 162/381 (42%), Gaps = 23/381 (6%)
Query: 4 ALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVA 63
AL + Q GA + K+ H +I ++V PI + T ++ + + +++
Sbjct: 70 ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 129
Query: 64 KKY---AIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVF---- 116
Y IF +P +Y + Q+ F SL P + + L +IPL W V+
Sbjct: 130 VGYMHAVIFAVP---AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186
Query: 117 KIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRA--SFSIDVFSSIKEFIRFSVP 174
+LG G +A + YW +LLL FYI S + +F + R P
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246
Query: 175 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 234
A + FE + V+ LL L + + A +L F + L + P G+ VS RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNF--SSLVFMFPMSIGAAVSIRVGHK 304
Query: 235 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 294
LG + K A +A ++ A +++ + R + + ++ +V ++ F
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364
Query: 295 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLG--AYYLVGIPIAAVLAFVF-----QLKGK 347
+ MD++Q V +G R G++ + A + +Y+++G+P +L L K
Sbjct: 365 IYQCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 422
Query: 348 GLLIGLATGSFVQAALLALKI 368
G +G G A +L ++
Sbjct: 423 GFWLGFIIGLSAAALMLGQRL 443
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 136/353 (38%), Gaps = 17/353 (4%)
Query: 3 SALETLCGQAYGAEQFQKLGIYKHCSI-ISLIIVCFPISLLWIFTDKLLILVGQDPSISR 61
+AL + Q YGA + + G I LI+ F + L+W + +
Sbjct: 71 AALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDYVEG 130
Query: 62 VAKKYAIFL---IPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK- 117
+Y +F +P + L ++ LI+ + +++ ++PL + V+
Sbjct: 131 TMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAA---FVLNVPLNYIFVYGK 187
Query: 118 ---IKLGSNGAALAVGLSYWFNVLLLGFYI---KYSSECEKTRASFSIDVFSSIKEFIRF 171
LG G +A +WF+ L L YI K+ T A F ++ K+ +
Sbjct: 188 FGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLT-AKFGKPDWAVFKQIWKI 246
Query: 172 SVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRV 231
P + E ++ ++ L + P + + + +++ + Y IP GS + R+
Sbjct: 247 GAPIGLSYFLEASAFSFIVFL--IAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVRI 304
Query: 232 SNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 291
LG A+ ++ V + L+ R L + ++ + ++
Sbjct: 305 GFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLL 364
Query: 292 FICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQL 344
F L D Q + S RG K+ F++ A++ G+ +LA+ F +
Sbjct: 365 FAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDM 417
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 14 GAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKY 66
GA+Q ++G+++ S +++ + P D +I QDP+ + +AKKY
Sbjct: 72 GAKQVLEIGVFRGYSALAMALQLPP--------DGQIIACDQDPNATAIAKKY 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,233,807
Number of Sequences: 62578
Number of extensions: 379013
Number of successful extensions: 967
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)