Query 015865
Match_columns 399
No_of_seqs 219 out of 2003
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 01:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.7E-53 1E-57 398.5 44.0 375 1-378 72-450 (455)
2 PRK10189 MATE family multidrug 100.0 9.4E-49 2E-53 372.7 42.8 374 1-376 84-467 (478)
3 PRK00187 multidrug efflux prot 100.0 3E-48 6.6E-53 369.2 45.7 368 2-371 66-444 (464)
4 PRK01766 multidrug efflux prot 100.0 4.6E-46 9.9E-51 355.3 45.5 372 2-375 68-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 4.9E-46 1.1E-50 353.5 43.4 364 2-370 69-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.7E-45 3.6E-50 347.3 43.7 362 2-374 66-433 (441)
7 TIGR01695 mviN integral membra 100.0 1.9E-34 4.2E-39 279.2 42.2 356 6-371 61-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 8.7E-34 1.9E-38 273.8 40.2 361 1-370 56-433 (488)
9 TIGR00797 matE putative efflux 100.0 1.6E-33 3.5E-38 259.4 34.6 291 1-293 48-341 (342)
10 PRK15099 O-antigen translocase 100.0 1.8E-32 3.8E-37 258.7 38.6 349 2-369 59-410 (416)
11 KOG1347 Uncharacterized membra 100.0 9.6E-33 2.1E-37 258.4 26.5 386 2-389 85-470 (473)
12 PF03023 MVIN: MviN-like prote 100.0 1.8E-29 3.9E-34 238.6 44.5 359 2-371 34-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 4.7E-26 1E-30 211.9 42.4 364 1-372 66-438 (518)
14 COG0534 NorM Na+-driven multid 99.9 2.3E-25 5E-30 210.5 27.9 210 161-373 12-223 (455)
15 PRK10459 colanic acid exporter 99.9 1.3E-23 2.7E-28 203.0 39.8 328 23-370 75-404 (492)
16 PRK00187 multidrug efflux prot 99.9 1.1E-24 2.5E-29 207.6 26.2 208 160-371 4-215 (464)
17 PRK10367 DNA-damage-inducible 99.9 1.9E-24 4.2E-29 204.2 26.3 207 162-370 5-211 (441)
18 PRK10189 MATE family multidrug 99.9 6.9E-24 1.5E-28 202.3 25.5 206 162-370 25-236 (478)
19 PRK09575 vmrA multidrug efflux 99.9 2.4E-24 5.2E-29 205.0 20.9 208 161-371 7-215 (453)
20 PRK01766 multidrug efflux prot 99.9 3.9E-23 8.5E-28 197.5 27.5 210 160-372 6-219 (456)
21 COG2244 RfbX Membrane protein 99.9 2.3E-21 5E-26 186.8 36.2 277 65-353 118-394 (480)
22 TIGR00797 matE putative efflux 99.8 1.8E-19 4E-24 165.9 22.0 194 174-370 1-196 (342)
23 PF01554 MatE: MatE; InterPro 99.8 1.5E-20 3.3E-25 153.7 9.9 162 174-337 1-162 (162)
24 KOG1347 Uncharacterized membra 99.6 3.3E-13 7.3E-18 127.2 20.3 206 162-371 24-230 (473)
25 PF01943 Polysacc_synt: Polysa 99.5 5.1E-12 1.1E-16 112.3 24.4 217 3-234 54-272 (273)
26 TIGR02900 spore_V_B stage V sp 99.5 8.1E-13 1.8E-17 127.8 20.7 196 169-371 2-204 (488)
27 TIGR01695 mviN integral membra 99.4 3.8E-11 8.2E-16 116.6 23.6 197 168-371 2-207 (502)
28 PF13440 Polysacc_synt_3: Poly 99.4 1.2E-09 2.5E-14 95.9 26.5 211 4-234 40-251 (251)
29 PF03023 MVIN: MviN-like prote 99.4 1.5E-10 3.2E-15 110.1 21.4 146 2-149 255-405 (451)
30 PRK15099 O-antigen translocase 99.3 6.7E-11 1.5E-15 111.9 17.9 192 169-370 4-196 (416)
31 PF01554 MatE: MatE; InterPro 99.3 7.4E-13 1.6E-17 108.1 2.7 112 2-113 49-162 (162)
32 COG0728 MviN Uncharacterized m 99.3 1.9E-09 4E-14 101.6 25.2 172 2-182 289-465 (518)
33 PF04506 Rft-1: Rft protein; 99.0 5.9E-07 1.3E-11 86.5 25.5 205 164-370 251-469 (549)
34 PRK10459 colanic acid exporter 98.8 4.7E-06 1E-10 80.8 26.2 135 6-146 269-404 (492)
35 KOG2864 Nuclear division RFT1 98.8 1.8E-05 3.9E-10 71.8 27.0 301 67-370 126-448 (530)
36 COG2244 RfbX Membrane protein 98.6 3E-06 6.5E-11 81.9 19.5 126 2-132 270-396 (480)
37 PF14667 Polysacc_synt_C: Poly 98.6 6.9E-06 1.5E-10 65.5 17.3 80 67-148 2-81 (146)
38 PF14667 Polysacc_synt_C: Poly 98.3 4E-06 8.6E-11 66.9 9.0 79 290-371 2-80 (146)
39 PF01943 Polysacc_synt: Polysa 98.3 0.00019 4.1E-09 63.5 19.9 188 170-371 3-191 (273)
40 PF07260 ANKH: Progressive ank 98.1 0.0022 4.7E-08 56.1 21.7 160 51-212 116-285 (345)
41 PF13440 Polysacc_synt_3: Poly 98.1 0.00095 2.1E-08 58.3 20.2 165 188-369 6-171 (251)
42 PF07260 ANKH: Progressive ank 97.9 0.0045 9.8E-08 54.2 20.2 159 161-326 6-168 (345)
43 PF04506 Rft-1: Rft protein; 97.1 0.016 3.5E-07 56.3 14.9 128 19-147 339-470 (549)
44 COG4267 Predicted membrane pro 96.0 1.2 2.5E-05 40.5 29.5 324 5-355 84-430 (467)
45 KOG2864 Nuclear division RFT1 96.0 0.12 2.6E-06 47.8 11.5 139 7-147 304-449 (530)
46 TIGR00822 EII-Sor PTS system, 91.9 8.1 0.00017 33.8 14.9 51 216-266 109-160 (265)
47 COG4267 Predicted membrane pro 80.9 47 0.001 30.7 20.6 137 217-370 74-210 (467)
48 PRK09757 PTS system N-acetylga 73.3 65 0.0014 28.4 16.3 34 216-249 110-143 (267)
49 PF05975 EcsB: Bacterial ABC t 59.1 1.6E+02 0.0034 27.6 16.3 37 238-274 88-124 (386)
50 PF03904 DUF334: Domain of unk 50.1 82 0.0018 26.7 6.8 62 17-78 142-212 (230)
51 TIGR00765 yihY_not_rbn YihY fa 45.5 2.1E+02 0.0045 25.0 15.6 11 8-18 106-116 (259)
52 PF04505 Dispanin: Interferon- 45.1 1E+02 0.0023 21.4 6.5 34 226-259 39-72 (82)
53 KOG2468 Dolichol kinase [Lipid 44.6 2.9E+02 0.0062 26.4 10.3 75 172-255 379-453 (510)
54 PF03547 Mem_trans: Membrane t 39.4 1.9E+02 0.0042 26.8 8.7 13 252-264 35-47 (385)
55 PF02117 7TM_GPCR_Sra: Serpent 37.9 3E+02 0.0064 25.2 9.3 58 281-338 230-287 (328)
56 PF06808 DctM: DctM-like trans 37.6 3.7E+02 0.0079 25.6 14.3 81 159-262 203-283 (416)
57 PF03631 Virul_fac_BrkB: Virul 36.2 2.9E+02 0.0063 24.0 15.8 54 64-117 161-215 (260)
58 PF05684 DUF819: Protein of un 33.3 4.1E+02 0.0089 24.9 12.2 15 238-252 72-86 (378)
59 PRK10739 putative antibiotic t 31.1 3.1E+02 0.0068 22.9 8.3 62 227-292 20-81 (197)
60 PF14184 YrvL: Regulatory prot 31.1 2.5E+02 0.0054 21.7 13.9 94 24-119 3-97 (132)
61 TIGR00822 EII-Sor PTS system, 30.6 3.8E+02 0.0082 23.7 12.4 75 8-85 123-199 (265)
62 PF01595 DUF21: Domain of unkn 29.9 3E+02 0.0064 22.2 13.4 54 226-279 101-154 (183)
63 TIGR00383 corA magnesium Mg(2+ 29.8 1.4E+02 0.0031 26.9 5.9 55 316-373 255-317 (318)
64 PRK09546 zntB zinc transporter 28.4 1.8E+02 0.0038 26.5 6.3 50 321-373 266-323 (324)
65 PF11446 DUF2897: Protein of u 27.9 48 0.001 21.1 1.7 21 353-373 11-31 (55)
66 PF05975 EcsB: Bacterial ABC t 27.2 5.2E+02 0.011 24.2 16.6 35 17-51 89-124 (386)
67 COG1620 LldP L-lactate permeas 27.1 4.1E+02 0.0089 26.0 8.3 53 309-370 203-255 (522)
68 PF12794 MscS_TM: Mechanosensi 25.1 5.4E+02 0.012 23.6 20.4 26 241-266 119-144 (340)
69 PF02592 DUF165: Uncharacteriz 24.7 3.4E+02 0.0074 21.2 11.0 34 5-41 13-46 (145)
70 COG5393 Predicted membrane pro 24.5 3.1E+02 0.0067 20.6 5.9 32 341-372 77-108 (131)
71 PF02652 Lactate_perm: L-lacta 24.3 2.9E+02 0.0062 27.2 7.1 20 351-370 234-253 (522)
72 PF01102 Glycophorin_A: Glycop 23.5 81 0.0017 24.0 2.5 23 348-370 68-90 (122)
73 PF04505 Dispanin: Interferon- 23.1 1.9E+02 0.004 20.2 4.2 30 8-37 43-72 (82)
74 PF01914 MarC: MarC family int 22.9 4.6E+02 0.0099 22.0 10.4 60 228-291 21-80 (203)
75 PF04138 GtrA: GtrA-like prote 21.7 3.3E+02 0.0072 19.9 11.8 75 101-185 7-81 (117)
76 PF06679 DUF1180: Protein of u 21.4 43 0.00094 26.9 0.8 7 392-398 146-152 (163)
77 TIGR00881 2A0104 phosphoglycer 21.4 6E+02 0.013 22.8 10.4 11 227-237 49-59 (379)
78 TIGR00427 membrane protein, Ma 21.1 5E+02 0.011 21.7 8.1 62 227-292 23-84 (201)
79 PF05313 Pox_P21: Poxvirus P21 20.8 4.8E+02 0.01 21.4 6.9 28 121-148 135-162 (189)
80 PRK00523 hypothetical protein; 20.6 1.5E+02 0.0033 20.1 3.0 9 161-169 41-49 (72)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.7e-53 Score=398.48 Aligned_cols=375 Identities=23% Similarity=0.348 Sum_probs=356.2
Q ss_pred ChhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHH
Q 015865 1 MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAV 79 (399)
Q Consensus 1 i~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~ 79 (399)
++.|.++++||++|+||++++++..++++.++++++++.+++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..+
T Consensus 72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999888887 9999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh-hc-CCcchhHHHHHHHHHHHHHHHHHHHhhccc-cccccCC
Q 015865 80 LQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK-IK-LGSNGAALAVGLSYWFNVLLLGFYIKYSSE-CEKTRAS 156 (399)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (399)
+..+++.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|+.|+++||++++.+.++.+.++++++++ ......+
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK 231 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999999 57 999999999999999999999999998775 2223233
Q ss_pred CcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 015865 157 FSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELG 236 (399)
Q Consensus 157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g 236 (399)
..++|++.+|+++++|+|.++++..........+.+++++| ++++|+|+++.++.++..++..|++++.++++++++|
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33567899999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Q 015865 237 AGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQ 316 (399)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 316 (399)
+||+|++++..+.+..++..++...+++++++++++..+|++|+|+.+.+..++++.+...++++.+.+..+.+||.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Q 015865 317 KIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQAS 378 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (399)
|.++..++++.|.+.+|..|++.+.+ +|..|+|++...++.+..+...++++|.+|+++..
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAV 450 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999998776 89999999999999999999999999998876654
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=9.4e-49 Score=372.70 Aligned_cols=374 Identities=13% Similarity=0.141 Sum_probs=345.0
Q ss_pred ChhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC--CChHHHHHHHHHHHHHhhhHHHH
Q 015865 1 MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVG--QDPSISRVAKKYAIFLIPNLFSY 77 (399)
Q Consensus 1 i~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~--~~~~~~~~a~~yl~i~~~~~~~~ 77 (399)
+++|.+++++|++|++|++++++..++++.++.+++++.+++ +.+.++++.++. .|+|+.+.+.+|+++..++.|+.
T Consensus 84 l~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 84 IDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999998887 778889999884 68999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh----hcCCcchhHHHHHHHHHHHHHHHHHHHhhcc--ccc
Q 015865 78 AVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK----IKLGSNGAALAVGLSYWFNVLLLGFYIKYSS--ECE 151 (399)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~--~~~ 151 (399)
.+...+++++|+.||++.+++.++++.++|++++++++++ +++|+.|+++|+.+++.+..+...+++.+++ ..+
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 243 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALR 243 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccce
Confidence 9999999999999999999999999999999999999986 4899999999999999999888776665432 222
Q ss_pred cccCC-CcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 015865 152 KTRAS-FSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTR 230 (399)
Q Consensus 152 ~~~~~-~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~ 230 (399)
.++++ +.+.+++.+|+++++|+|..++.........+.+.+++++| ++++|+++++.++.++..++..|++++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~l 321 (478)
T PRK10189 244 ISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTII 321 (478)
T ss_pred eeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22346789999999999999999999998888888899998 7899999999999999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015865 231 VSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVA 310 (399)
Q Consensus 231 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 310 (399)
+++++|++|++++|+..+.+..++..++..++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.+
T Consensus 322 vg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l 401 (478)
T PRK10189 322 TGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGL 401 (478)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhCCHHHH
Q 015865 311 RGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQ 376 (399)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 376 (399)
||.||++.++.+++.+.|++.+|+.|++....++|..|+|++..+++.+..++..+++++++|+++
T Consensus 402 rg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 402 KGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999999999999999999999999988778999999999999999999999999999999874
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3e-48 Score=369.15 Aligned_cols=368 Identities=22% Similarity=0.271 Sum_probs=335.8
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQ 81 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~ 81 (399)
++|.++++||++|++|+|++++++++++.+..+++++..++..+.++++..++.|+|+.+.+.+|+++..++.|+..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999988777557799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh----hcCCcchhHHHHHHHHHHHHHHHHHHHhhccccc-cc-cC
Q 015865 82 SFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK----IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECE-KT-RA 155 (399)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~ 155 (399)
.+++++|+.|+++.+++.++++.++|+++|++|+++ +++|+.|+++||.+++.+..+.+.++++++++.+ .+ ++
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 999999999999999999999999999999999986 3699999999999999988887777776543321 11 11
Q ss_pred CCcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 015865 156 SFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNEL 235 (399)
Q Consensus 156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~ 235 (399)
+..+.+++.+|+++++++|.++++..+...+.+++.+++++| ++++|++++++++..+...+..|++++..++++|++
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222356788999999999999999999999999999999998 789999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC--ch---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015865 236 GAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSS--SE---NIVHRLADMVPFICLSIIMDSLQAVLSGVA 310 (399)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 310 (399)
|+||+|++++..+.+..++..++++.+++++.+++++.++|++ |+ |+.+.+..++++.+++.+++.++.+..+++
T Consensus 304 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 304 GAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999964 43 688999999999999999999999999999
Q ss_pred hccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 311 RGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
||.||+|.+++.++++.|++++|++|++.+.+++|+.|+|+++.+++.+..+....+++.+
T Consensus 384 rg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 384 RGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999899999999999988889999999999999999988776666433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.6e-46 Score=355.29 Aligned_cols=372 Identities=21% Similarity=0.351 Sum_probs=343.4
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
+.|.++.+||++|++|+|+.++..+.++.+..++++++.++ +.+.+++..+++.|+|+.+.+.+|+++.+++.|+..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999988887 77778999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh----hcCCcchhHHHHHHHHHHHHHHHHHHHhhcccccc--cc
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK----IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEK--TR 154 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~--~~ 154 (399)
.++++++|+.|+++.+++.++++.++|++++++++++ +++|+.|+++||.+++.+..+...++.+++++.++ .+
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 9999999999999999999999999999999999975 46899999999999999999998888876543221 12
Q ss_pred CCCcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 015865 155 ASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 234 (399)
Q Consensus 155 ~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~ 234 (399)
.++.+++++..|+++++++|..++...+...+.++..+++++| ++++++++++.++.++...+..+++.+..+.++|+
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222346788999999999999999999999999999999998 78899999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC
Q 015865 235 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSG 314 (399)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 314 (399)
+|+||++++++..+.+..++..++++.+++++.+++++.++|++|+|+.+.+..++++..+..++..++....+++||.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhCCHHH
Q 015865 315 WQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGK 375 (399)
Q Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 375 (399)
|++.++..++++.|++++|..+++.+.+++|..|+|+++.+++++..++..+++++.+|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998899999999998888899999999999999999999888887766543
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.9e-46 Score=353.52 Aligned_cols=364 Identities=14% Similarity=0.129 Sum_probs=333.4
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
+.|.+++++|++|++|+|++++.+++++.++.+++++..++ +.+.++++.+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999988887 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCcH
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSE-CEKTRASFSI 159 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (399)
....+.+|+.|+++.++..++.+.++|+++|+++++.+++|+.|+++|+.+++.+.++...++++++++ .+.+.+.+ +
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 227 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-R 227 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-C
Confidence 999999999999999999999999999999999999889999999999999999999998877765443 22222222 3
Q ss_pred HhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC
Q 015865 160 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 239 (399)
Q Consensus 160 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~ 239 (399)
.+++.+|+++++|.|..++.....+...+.+.+.+++|+ ++++|+++++.++..+..++..|++++..|.+||++|+||
T Consensus 228 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~ 306 (453)
T PRK09575 228 FNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQ 306 (453)
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCC
Confidence 567889999999999999999999998888888888883 4689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC-chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccch
Q 015865 240 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSS-SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKI 318 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 318 (399)
+|++++..+.++.+++..+++.+++++.+++++..+|++ |+|+.+.+.+++++.+++.++++++.+..+.+||.||++.
T Consensus 307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 386 (453)
T PRK09575 307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK 386 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 999999999999999999999999999999999999995 7899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 319 GAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 319 ~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
++..++.. +++++|..|++... +|+.|+|+++.+++.+..++...++++
T Consensus 387 ~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 387 ALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999887 57899999998543 799999999999999988877766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=347.25 Aligned_cols=362 Identities=15% Similarity=0.105 Sum_probs=317.0
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
+.|.++++||++|++|+|++++..++++.++.++++++.++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999988877 77888999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccc-cCCCcH
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKT-RASFSI 159 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 159 (399)
.++++.+|+.||++.+++.++++.++|+++|++|++++++|+.|+++||.+++.+.++...++++++++.+.. .+.++
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~- 224 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLK- 224 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhh-
Confidence 9999999999999999999999999999999999998899999999999999999998887777654322211 11111
Q ss_pred Hh-HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCC
Q 015865 160 DV-FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG 238 (399)
Q Consensus 160 ~~-~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~ 238 (399)
.+ ++.+|++++++.|..++.......+.+.+.+++++| ++++|+|+++.++.++.+++..|++++.+|.++|++|+|
T Consensus 225 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~ 302 (441)
T PRK10367 225 TAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGAR 302 (441)
T ss_pred hhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 22 357899999999999999999999999999999998 779999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC---c
Q 015865 239 NPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSG---W 315 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~ 315 (399)
|+|++|+..+.+.+++...+...+++++.+++++..+|++|+|+.+.+..++++.++..+.........+++++.+ |
T Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~d 382 (441)
T PRK10367 303 DGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAE 382 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHH
Confidence 9999999999999999999999999999999999999999999999999999998876443334444444444444 5
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhCCHH
Q 015865 316 QKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWG 374 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 374 (399)
+|.++.+++++.|+..++. +++|..|+|++..+++.+..++..++++++ |+
T Consensus 383 t~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~ 433 (441)
T PRK10367 383 MRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WR 433 (441)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999866422211 347999999999999999999988777665 63
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.9e-34 Score=279.23 Aligned_cols=356 Identities=15% Similarity=0.111 Sum_probs=301.5
Q ss_pred HHHHHhhhcccch-hcHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHh--CCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 6 ETLCGQAYGAEQF-QKLGIYKHCSIISLIIVCFP-ISLL-WIFTDKLLILV--GQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 6 ~~~is~~~~~~~~-~~~~~~~~~~~~~~~i~~~i-~~~~-~~~~~~~~~~~--~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
+..+++..+++|+ |+.++.+.+++....+.+.+ ..++ +.+++++..++ +.++|..+.+.+|++++.++.++..+.
T Consensus 61 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 61 SAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 57777777776666655544 4455 77778888877 457788899999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhH--HHHHHHHHHHHHHHHHHHhhccccccccCCCc
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAA--LAVGLSYWFNVLLLGFYIKYSSECEKTRASFS 158 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (399)
...++++|+.+|++.+++.+++.++++++...++. .++|..|++ +++++++.+..++..++.+|++. +. ++++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~- 215 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LL-KPRF- 215 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cc-cCcC-
Confidence 99999999999999999999999988877543433 578999998 99999999999988877765432 11 1111
Q ss_pred HHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhcC
Q 015865 159 IDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYF-IPYGFGSTVSTRVSNELGA 237 (399)
Q Consensus 159 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~ 237 (399)
+.+++..|++++++.|..++.....+...+|..+.+.++ ++++++|+.+.++.++... +..+++++..|.+++++|+
T Consensus 216 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~ 293 (502)
T TIGR01695 216 NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293 (502)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 235678999999999999999999999999998877776 6789999999999988765 5789999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC----chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Q 015865 238 GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSS----SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGS 313 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 313 (399)
+|+++.++..+++.+....+++|.++.++.+++++..++.+ |+|..+.+..++++++++.++.+++.+..+.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~ 373 (502)
T TIGR01695 294 GNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYAR 373 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Confidence 99999999999999999999999999999999999998865 55778889999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 314 GWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 314 g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
||+|.+++.+..+ .++++++++++.. .+|..|+|+|+.+++.+..++..++.+|+
T Consensus 374 g~~~~~~~~~~~~-~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 374 KDTRTPFINSVIS-VVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCCccCHHHHHHH-HHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 5889999999854 47999999999999999988887777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=8.7e-34 Score=273.79 Aligned_cols=361 Identities=15% Similarity=0.153 Sum_probs=303.0
Q ss_pred ChhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHH
Q 015865 1 MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAV 79 (399)
Q Consensus 1 i~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~ 79 (399)
++++..+.+||+.|++|+++.++.+++++.+..+++++..++ +.+.+++...+..+++. ..++++..+..++..+
T Consensus 56 l~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~ 131 (488)
T TIGR02900 56 LPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIAL 131 (488)
T ss_pred cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999988887 66777777766666543 3468888999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh-----hcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccc-
Q 015865 80 LQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK-----IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKT- 153 (399)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~- 153 (399)
....++++|+.+|+|..+..++++.++|+.++..++.. .+.|+.|+++++.+++.+..+...++.+++++.+.+
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (488)
T TIGR02900 132 SSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRF 211 (488)
T ss_pred HHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999998887666543 356788899999999999999887776654332211
Q ss_pred -cCCCcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCC-----hhh---hhHHH-HHHHHHHHHHHHhhhhH
Q 015865 154 -RASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPN-----PKL---EASVF-SLCFTITYLHYFIPYGF 223 (399)
Q Consensus 154 -~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~a~~-~i~~~i~~~~~~~~~~~ 223 (399)
+.+..+.+++.+|+++++++|..++++...+...+|+.++++... ..+ ..+.| +++.++..+...+..++
T Consensus 212 ~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l 291 (488)
T TIGR02900 212 PFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSL 291 (488)
T ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHH
Confidence 111223457789999999999999999999999999998876421 011 22222 35566777777788999
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHH
Q 015865 224 GSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQ 303 (399)
Q Consensus 224 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 303 (399)
+++..|.++++.|++|+++.++..+++.++...++.|+++.+..+++++..++.++++ +.++++++++..++..++
T Consensus 292 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~ 367 (488)
T TIGR02900 292 STALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFS 367 (488)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876543 678899999999999999
Q ss_pred HHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 304 AVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 304 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
....+.+++.||+|.+++.++.+ .++++++++.+...+.+|..|+|+++.+++.+..++..+..+|
T Consensus 368 ~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 368 APLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 4899999999864477999999999999999999988887765
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.6e-33 Score=259.43 Aligned_cols=291 Identities=27% Similarity=0.458 Sum_probs=266.2
Q ss_pred ChhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHH
Q 015865 1 MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAV 79 (399)
Q Consensus 1 i~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~ 79 (399)
+++|..+.++|+.|++|+|+.++..++++.+..+++++.+++ +.+.+++..+++.+++..+.+.+|++++.++.++...
T Consensus 48 i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 127 (342)
T TIGR00797 48 LGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLL 127 (342)
T ss_pred HHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999987 8888999988887888999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHh-hhc-CCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCC
Q 015865 80 LQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVF-KIK-LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASF 157 (399)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (399)
...+.+.+|+.+|++.++..++++.++++.++++++. .++ +|+.|+++++.+++++.+++..++.+|+++.+.++++.
T Consensus 128 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
T TIGR00797 128 NFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGL 207 (342)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 9999999999999999999999999999999999887 567 88999999999999999999888877644443332222
Q ss_pred cHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC
Q 015865 158 SIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGA 237 (399)
Q Consensus 158 ~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~ 237 (399)
.+.+++..|++++++.|..+++....+...+++.+.+++| ++++++|+++.++.++...+..+++++..|.+++++|+
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 285 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGA 285 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788999999999999999999999999999999987 77999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHH
Q 015865 238 GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFI 293 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~ 293 (399)
+|.++.++..+++.++....+++.+.+++++++++.++|++|+++.+.+..++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 286 GDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.8e-32 Score=258.74 Aligned_cols=349 Identities=11% Similarity=0.026 Sum_probs=293.7
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
++|.++.++|+ ++|+|+.++.+++++.+..+.+++++++ +.+.+++...++.+++. ..+..+..+..+...+.
T Consensus 59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWA 132 (416)
T ss_pred cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHH
Confidence 34557788887 6788899999999999999999999987 88888988877766653 24566667777777888
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCcHH
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSID 160 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (399)
....+.+|+.+|++.++...+++.++|+++ +++++. ..|+.|+++|+++++.+..+...++.+|+++.+.++.+. +.
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 209 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SW 209 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cC
Confidence 999999999999999999999999999887 444443 249999999999999999888777776554422221122 24
Q ss_pred hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc-cCCChhhhhHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhhcCC
Q 015865 161 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG-LLPNPKLEASVFSLCFTITY-LHYFIPYGFGSTVSTRVSNELGAG 238 (399)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~i~~~i~~-~~~~~~~~~~~~~~~~~s~~~g~~ 238 (399)
|++..|+++++|.|..+++....+....++.+++ ++| ++++|+|+++.++.+ +...+..+++++..|.++++ +
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 6888999999999999999999999999999996 777 789999999999977 45788999999999999995 6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccch
Q 015865 239 NPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKI 318 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 318 (399)
|.++.++..++........+.+.++.++++++++..++.+|+ ++.+.+++++++++.++...+..+...+.+.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998776 566788999999999999888888877778888888
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHH
Q 015865 319 GAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIV 369 (399)
Q Consensus 319 ~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 369 (399)
.....+.. .++++++++++. +.+|..|+++++.+++.+..++..+...
T Consensus 363 ~~~~~~~~-~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 363 YILAEVSQ-FTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776 688999999984 4589999999999999999887765554
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=9.6e-33 Score=258.44 Aligned_cols=386 Identities=47% Similarity=0.790 Sum_probs=364.8
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQ 81 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~ 81 (399)
+++..++++|++|.++++....+.+.+..+....+++...++.+.++++..+++|+++...+..|.+..++..+.+....
T Consensus 85 ~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~ 164 (473)
T KOG1347|consen 85 QLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSF 164 (473)
T ss_pred chhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCcHHh
Q 015865 82 SFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDV 161 (399)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (399)
.++.++|++++..+..+......++|+.+++++++.+++|..|++++..+++++.......+..... ..+.|..+...
T Consensus 165 ~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~- 242 (473)
T KOG1347|consen 165 PLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE- 242 (473)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999988655 45556666555
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCChH
Q 015865 162 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPK 241 (399)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 241 (399)
++.+++++++++|..++...+.+...+..+..|.++++..++++.++..++....+++..+++.+...++++.+|+++++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 89999999999999999999999999999999999987889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHH
Q 015865 242 AAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 321 (399)
++|.........+...+...+...+...+.+..+|++|+|+.+...+..++++...++++.+.+..+..+|.|+++...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCc
Q 015865 322 VNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDS 389 (399)
Q Consensus 322 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
+++...+++++|....+.+..++|..|.|.++..+..+..........+.+|++..++.+++...++.
T Consensus 403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~ 470 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLV 470 (473)
T ss_pred EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhcc
Confidence 99999899999999999888899999999999999888888888888889999999998888765543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.8e-29 Score=238.59 Aligned_cols=359 Identities=16% Similarity=0.134 Sum_probs=314.4
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--CCChHHHHHHHHHHHHHhhhHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILV--GQDPSISRVAKKYAIFLIPNLFSYA 78 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~--~~~~~~~~~a~~yl~i~~~~~~~~~ 78 (399)
+++..+..++.. ++|+|+.++..++.+.+..+.+++++++ +.+++++.+.+ +.++|..+.+.++++++.+..++..
T Consensus 34 ~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~ 112 (451)
T PF03023_consen 34 SAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIG 112 (451)
T ss_pred HHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777877 7889999999999999999999988888 88889998887 5678999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCC---cchhHHHHHHHHHHHHHHHHHHHhhccccccccC
Q 015865 79 VLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLG---SNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRA 155 (399)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 155 (399)
+..++.+++|+++|+..+....++.++..++...++. ...| +.+.++|..++..+..++.+...+|.+...+...
T Consensus 113 l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~ 190 (451)
T PF03023_consen 113 LSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKF 190 (451)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccC
Confidence 9999999999999999999999988877655433333 3456 8899999999999999999888886553211111
Q ss_pred CCcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhh
Q 015865 156 SFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYF-IPYGFGSTVSTRVSNE 234 (399)
Q Consensus 156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~~~~~~~~~~~s~~ 234 (399)
..+.+..|++++...|..+.....++...+|+.+.+.++ +..+++++.++++.++... +..+++++..|..++.
T Consensus 191 ---~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~ 265 (451)
T PF03023_consen 191 ---DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRL 265 (451)
T ss_pred ---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123556999999999999999999999999999999998 5589999999999998874 5779999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015865 235 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS----SSENIVHRLADMVPFICLSIIMDSLQAVLSGVA 310 (399)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 310 (399)
..++|.++.++..++.++....+.+|.++.++.+++++..++. .|+|..+.....+++++++.++.+++..+...+
T Consensus 266 ~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~f 345 (451)
T PF03023_consen 266 AAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVF 345 (451)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998774 356668889999999999999999999999999
Q ss_pred hccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 311 RGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
.+.||+|.++..++++ .++++.+++.+ .+.+|..|+++|+.++..+..++....++|+
T Consensus 346 ya~~~~~~~~~~~~~~-~~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 346 YALGDTKTPVRISVIS-VVLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHccCcHhHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 58999999888 4558999999999999999999988888775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=4.7e-26 Score=211.85 Aligned_cols=364 Identities=16% Similarity=0.091 Sum_probs=309.3
Q ss_pred ChhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-CC--ChHHHHHHHHHHHHHhhhHHH
Q 015865 1 MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILV-GQ--DPSISRVAKKYAIFLIPNLFS 76 (399)
Q Consensus 1 i~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~-~~--~~~~~~~a~~yl~i~~~~~~~ 76 (399)
++++..+...|+..++++|+.++..+....+...+.++++++ ..+.+.+.... +. +++....+....+++.+.+++
T Consensus 66 fs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~ 145 (518)
T COG0728 66 FSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLF 145 (518)
T ss_pred HhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888888887777777888887 67777777444 32 234444678888999999999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCC
Q 015865 77 YAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRAS 156 (399)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (399)
..+.+...+.+++.+++..+++..+..++.-+.....+.........+.++|+.++.+++.++.+...+|.+...+.+.+
T Consensus 146 isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~ 225 (518)
T COG0728 146 ISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG 225 (518)
T ss_pred HHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCC
Confidence 99999999999999999999999999888877555544433222367889999999999999999999977643332222
Q ss_pred CcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhh
Q 015865 157 FSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNEL 235 (399)
Q Consensus 157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~~~~~~~s~~~ 235 (399)
.+.+.+|++++...|..+.....++...+|+.+.+.+. +-.++.+..++++.++.. .+..++++...|..|++.
T Consensus 226 ---~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~ 300 (518)
T COG0728 226 ---FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA 300 (518)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 23468999999999999999999999999999999997 448999999999999998 568899999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 015865 236 GAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS----SSENIVHRLADMVPFICLSIIMDSLQAVLSGVAR 311 (399)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 311 (399)
.++|.++.++..+.+++.++++.+|.++.+..+++|+...+. .+++......+.+..++++.++..+..+....++
T Consensus 301 ~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FY 380 (518)
T COG0728 301 ANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFY 380 (518)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998763 2445578889999999999999999999999999
Q ss_pred ccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhCC
Q 015865 312 GSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTD 372 (399)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 372 (399)
+.+|+|.|+++.+++ .++|+.+++.+ .+.+|..|.+.++.++.++.+.+.++.++|+.
T Consensus 381 Ar~d~ktP~~i~ii~-~~~n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 381 AREDTKTPMKIAIIS-LVVNILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HccCCCcChHHHHHH-HHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998 59999999666 45589999999999999999888888777753
No 14
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.95 E-value=2.3e-25 Score=210.53 Aligned_cols=210 Identities=23% Similarity=0.279 Sum_probs=201.8
Q ss_pred hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCh
Q 015865 161 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP 240 (399)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 240 (399)
+++..|+++++++|.+++++..+..+.+|++++|+++ ++++|+.++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 4668999999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhH
Q 015865 241 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (399)
+++++..+.+...+++++++..+..+.+++++..++++++|+.+.+.+|+++..++.++..++....+++|+.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-hc-CCccchhHHHHHHHHHHHHHHHHHHHhCCH
Q 015865 321 FVNLGAYYLVGIPIAAVLAFV-FQ-LKGKGLLIGLATGSFVQAALLALKIVFTDW 373 (399)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (399)
++++++ .+.|+.++|++++. ++ +|+.|+++|+.+++.+..+....++.|++.
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999998 59999999999888 56 999999999999999999999988887653
No 15
>PRK10459 colanic acid exporter; Provisional
Probab=99.95 E-value=1.3e-23 Score=203.01 Aligned_cols=328 Identities=9% Similarity=0.082 Sum_probs=267.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 015865 23 IYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSV 101 (399)
Q Consensus 23 ~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 101 (399)
+..++.+.+..+.++++.++ +.+.+++...++ +++. ...+++..+..++..+....++.+|+.++++..+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 45566777777788777776 555555554444 4443 34577778888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCcHHhHHhHHHHHHHHhhhHHHHHH
Q 015865 102 LTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCF 181 (399)
Q Consensus 102 ~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~ 181 (399)
...++..+....+.. .+.|+.+.++++++++.+..+...+..++ + .+++ .+.+++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~-~~~~----~~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-I-YRPA----LHFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-c-CCcc----ceecHHHHHHHHhhhHHHHHHHHH
Confidence 998888877776665 57899999999999998887665443322 1 1111 123467789999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 015865 182 EWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYF-IPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVT 260 (399)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 260 (399)
..+...+|+++++++. |++++|.|+.+.++.+.... +...+++...|..++. ++|.++.++..++..+....+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 47899999999999887554 4556788899999886 678899999999999999999999
Q ss_pred HHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHH
Q 015865 261 VSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAF 340 (399)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 340 (399)
+++.+..+++++..++.+++ +..+...++++++..++..+.......+++.||+|..+..+++. .++.+|..+.+.
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~- 375 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGG- 375 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHH-
Confidence 99999999999998887655 67789999999999999999999999999999999999999887 477888777774
Q ss_pred HhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 341 VFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 341 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
+.+|..|+++++.+++.+..+...+...|
T Consensus 376 -~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 -QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44799999999999999988887776633
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=1.1e-24 Score=207.56 Aligned_cols=208 Identities=17% Similarity=0.031 Sum_probs=191.9
Q ss_pred HhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC
Q 015865 160 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 239 (399)
Q Consensus 160 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~ 239 (399)
++++++|+++++++|.+++++...+...+|+++++++| ++++|+++++.++..+...+..+++++..+.++|++|+||
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchh
Q 015865 240 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (399)
++++++..+.+..+..+++++..+.++ +.+++..+++.|+|+.+.+.+|+++..++.++..+....++++|+.||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998877765 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----hcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 320 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
++.++++ .++|++++|++++. |++|+.|+++|+.+++....+...++++++
T Consensus 161 ~~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 161 MVISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 58899999998754 358999999999999888777666665543
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.94 E-value=1.9e-24 Score=204.16 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=194.5
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCChH
Q 015865 162 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPK 241 (399)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 241 (399)
.++.|+++++++|.+++++...+.+.+|+.++|+++ +++++|+.+++.++..+...+..+++.+..+.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 456899999999999999999999999999999996 3678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHH
Q 015865 242 AAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAF 321 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 321 (399)
++++..+.++..+++.+++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+.+|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 322 VNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 322 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
.++++ .++|++++|++.+.+++|+.|+++|+.+++.+..++..+++.|
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 5899999999988888999999999999999988877666554
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.93 E-value=6.9e-24 Score=202.32 Aligned_cols=206 Identities=16% Similarity=0.166 Sum_probs=192.8
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCChH
Q 015865 162 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPK 241 (399)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 241 (399)
-+..|+++++++|.++++......+.+|+.+++++| ++++|+++++.++..+...+..+++++..+.++|++|++|+|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 456999999999999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchh
Q 015865 242 AAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS--SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 319 (399)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (399)
++++..+.++.++..++++.+++.+.+++++..++. .|+|+.+.+.+|+++..++.++..+.....+++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----hcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 320 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
+..++++ +++|+++++.+.+. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997 68999999999764 47999999999999999988876655543
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.93 E-value=2.4e-24 Score=204.98 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=196.1
Q ss_pred hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccC-CChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC
Q 015865 161 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLL-PNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 239 (399)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~ 239 (399)
+++..|+++++++|..++++...+.+.+|+.+++++ | +++++++++++++..+...+..+++.+..+.++|++|+||
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~ 84 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGD 84 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 356789999999999999999999999999999996 6 7899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchh
Q 015865 240 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (399)
+|++++..+.++.++.+++++.+++.+.+++++..+++.|+|+.+.+.+|+++..++.++..++.....++|+.||++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 164 (453)
T PRK09575 85 LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLA 164 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 320 AFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
+..++.+ .++|+++++++.+.+++|+.|+++|+.+++.+..++..++++++
T Consensus 165 ~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 165 TGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999998 58999999999888889999999999999999988877666543
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=3.9e-23 Score=197.48 Aligned_cols=210 Identities=15% Similarity=0.108 Sum_probs=195.5
Q ss_pred HhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC
Q 015865 160 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 239 (399)
Q Consensus 160 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~ 239 (399)
..++.+|+++++++|..++.+..++...+|+.+++++| ++++++++++.++..+...+..+++.+..|.+|+++|++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34778999999999999999999999999999999998 7789999999999888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchh
Q 015865 240 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 319 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (399)
+++.++..+.++.++++++++.+++++.+++++..+++.|+|+.+.+.+|+++.+++.++..+.....+++++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----hcCCccchhHHHHHHHHHHHHHHHHHHHhCC
Q 015865 320 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFTD 372 (399)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 372 (399)
++.++++. ++++++++++.+. +++|+.|+++++.+++++..++..++++|++
T Consensus 164 ~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 164 MVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 99999984 8899999998753 4689999999999999999998877776543
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.92 E-value=2.3e-21 Score=186.78 Aligned_cols=277 Identities=17% Similarity=0.167 Sum_probs=229.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHH
Q 015865 65 KYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYI 144 (399)
Q Consensus 65 ~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~ 144 (399)
..+.+..+..+........++.+|+.++++..... .+.... .....+.. .........++...+..........+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (480)
T COG2244 118 LLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS-IVSSIF--LLAAVFAL-LFAALGLAVWALVLGAVVSLLVLLILL 193 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHH--HHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999999999999999999988 444311 11111221 124556666777777777666666666
Q ss_pred hhccccccccCCCcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHH
Q 015865 145 KYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFG 224 (399)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~ 224 (399)
.++++...+ ... +..++..|+.+++++|.........+...+|+++++++- +++++|.|+.+.++......+..+++
T Consensus 194 ~~~~~~~~~-~~~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~ 270 (480)
T COG2244 194 GKKKRGLKR-PIL-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALN 270 (480)
T ss_pred HHhhhhccc-ccc-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHH
Confidence 422221111 111 124789999999999999999999999999999999887 48899999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHH
Q 015865 225 STVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQA 304 (399)
Q Consensus 225 ~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 304 (399)
.+..|.+++...++|.++.++..+++.++...+++|..+.+..+++++..++.+++ +..+...++++++..++.+...
T Consensus 271 ~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~ 348 (480)
T COG2244 271 RVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVS 348 (480)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887766 4448999999999999999999
Q ss_pred HHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHH
Q 015865 305 VLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGL 353 (399)
Q Consensus 305 ~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~ 353 (399)
.....+++.|+++..+..+.++ .+.++.+++.+ .+.+|..|++.++
T Consensus 349 ~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~l--i~~~g~~g~~~a~ 394 (480)
T COG2244 349 LTSSLLQALGKQRLLLLISLIS-ALLNLILNLLL--IPRFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHH--HHhhhhhhHHHHH
Confidence 9999999999999999999998 48899999999 4557899999998
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.85 E-value=1.8e-19 Score=165.92 Aligned_cols=194 Identities=21% Similarity=0.225 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 015865 174 PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIIL 253 (399)
Q Consensus 174 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 253 (399)
|.+++++...+...+|+.+++++| ++++++++++.++..+...+..+++++..|.+++++|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 788899999999999999999998 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHHHHHhHH
Q 015865 254 AAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIP 333 (399)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 333 (399)
....+++.+++.+++++++..+++.|++..+.+..+++++++..++.+++....+++++.||++.++..++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999984 88899
Q ss_pred HHHHHHH-Hhc-CCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 334 IAAVLAF-VFQ-LKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 334 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
.++.+.. .++ +|..|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988876 566 789999999999999988887766665
No 23
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.83 E-value=1.5e-20 Score=153.74 Aligned_cols=162 Identities=20% Similarity=0.387 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 015865 174 PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIIL 253 (399)
Q Consensus 174 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 253 (399)
|.+++++...+.+.+++.+++++| ++++++++++.++.++...+..+++++..+.+||++|++|+|++++..+.+..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999997 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHHHHHhHH
Q 015865 254 AAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIP 333 (399)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 333 (399)
+..++++.++.++.+++++..+|+.|+|+.+.+.+++++..+..++..+.....+++++.||++.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 015865 334 IAAV 337 (399)
Q Consensus 334 ~~~~ 337 (399)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 24
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.57 E-value=3.3e-13 Score=127.17 Aligned_cols=206 Identities=16% Similarity=0.160 Sum_probs=189.9
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhhcCCCh
Q 015865 162 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYL-HYFIPYGFGSTVSTRVSNELGAGNP 240 (399)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~-~~~~~~~~~~~~~~~~s~~~g~~~~ 240 (399)
+++.|++.+++.|..+....+.....++..+.||+| +.++++.++++...+. -+.+..++..+..+..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 688999999999999999999999999999999999 5599999999888775 5667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhH
Q 015865 241 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA 320 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (399)
+......+++.......+.|.+... .+.+++...+++|+++...+..|.++..+..+.+.........+|++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999999999999988554 467999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 321 FVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
++..+. .++++++++++.+.+++|..|++++..+++.+.......+....
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 999998 59999999999999999999999999999999888877766543
No 25
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.54 E-value=5.1e-12 Score=112.35 Aligned_cols=217 Identities=16% Similarity=0.213 Sum_probs=160.8
Q ss_pred hhhHHHHHhhhcccch--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 3 SALETLCGQAYGAEQF--QKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 3 ~a~~~~is~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
.|....+.|+..+++. ++.+.+..+......+.+++......... ..+.+ +... .+........+.....
T Consensus 54 ~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~ 125 (273)
T PF01943_consen 54 LGLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILLIAS----FFGNP-SLSL---ILIILALLILILSSLS 125 (273)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCc-hHHH---HHHHHHHHHHHHHHHH
Confidence 3555566666655544 45556666665555555444444322222 33333 2221 1222222222578888
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCcHH
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSID 160 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (399)
....+.+++.++.+.....++...+...++...++.. +.+..+..++..++..+..++..++.+|+.+ ++....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 199 (273)
T PF01943_consen 126 SVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFF 199 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cccccc
Confidence 8999999999999999999999999888777666664 4558999999999999999988888875442 111223
Q ss_pred hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 015865 161 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 234 (399)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~ 234 (399)
+++..|++++++.|..++.+...+....|.++++++. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999987 488999999999999999999999999999999986
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.54 E-value=8.1e-13 Score=127.83 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=163.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhccC-CChhhhhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhcCCChHHHHHH
Q 015865 169 IRFSVPSAVMVCFEWWSYEVLILLSGLL-PNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELGAGNPKAAKMA 246 (399)
Q Consensus 169 l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~-~~~~~~~~~~~s~~~g~~~~~~~~~~ 246 (399)
.|-+.|..+++........+++.++++. | +++.|+++.+..+..+...+. .|++++....+++..|++|+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 4668899999999999999999999985 5 789999999999988877765 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHH
Q 015865 247 VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGA 326 (399)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 326 (399)
.+.+..+.++.+++.+++++.+++++...+.+|++. ..+++++++..++..+.......+|+.+|.+..+..+.++
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999999999988877666543 3567888899999999999999999999999999999888
Q ss_pred HHHHhHHHHHHHHH-----HhcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 327 YYLVGIPIAAVLAF-----VFQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 327 ~~~~~i~~~~~l~~-----~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
. ++++.....+.. ..+++..|.++++.++..+..+...+..+|+
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 566555433322 1235677888888888888888766555443
No 27
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.43 E-value=3.8e-11 Score=116.63 Aligned_cols=197 Identities=13% Similarity=0.093 Sum_probs=153.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhcc-CCChhhhh-HHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhcCCChHHH
Q 015865 168 FIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNPKLEA-SVFSLCFTITYLHYFIPY--GFGSTVSTRVSNELGAGNPKAA 243 (399)
Q Consensus 168 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-a~~~i~~~i~~~~~~~~~--~~~~~~~~~~s~~~g~~~~~~~ 243 (399)
+.|-+.-..+.++...+...++..++++ +| +++. ++++.+.++.+....+.. +++++..|...+..+++ |+.
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG--~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFG--AGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence 3566677778888888999999999999 67 5677 899999999877665533 67788777776654333 677
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhhhhccccc--CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhH
Q 015865 244 KMAVCAIIILAAAE-MVTVSIVLLFCRHILGYALS--SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA 320 (399)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (399)
++....+....... ++...++.+++++++..++. .|+|..+.+.++++++.++.++..+.....+++|+.||.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence 77776666655544 44456778888999998883 4667678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCccchh--HHHHHHHHHHHHHHHHHHHhC
Q 015865 321 FVNLGAYYLVGIPIAAVLAFVFQLKGKGLL--IGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~--~a~~~~~~~~~~~~~~~~~~~ 371 (399)
..+++.. +.++...+++ .+++|..|++ +++.++..+..++..++.+|+
T Consensus 158 ~~~i~~~-i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 158 FSPILFN-IGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHHHH-HHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999875 4554433333 5678999988 999999999888776666553
No 28
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.36 E-value=1.2e-09 Score=95.94 Aligned_cols=211 Identities=14% Similarity=0.206 Sum_probs=150.4
Q ss_pred hhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015865 4 ALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSF 83 (399)
Q Consensus 4 a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~ 83 (399)
|....+.+. .++|+++.++..+.......+.+++..++ ...+..++ .+++. ..++....+..+........
T Consensus 40 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~ 110 (251)
T PF13440_consen 40 GLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAIL---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLF 110 (251)
T ss_pred HHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHH
Confidence 444455552 33555566666666655544444444333 11222233 33332 23456677788889999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCcHHhHH
Q 015865 84 IRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFS 163 (399)
Q Consensus 84 ~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
++.+++++|.+.....++...+...++...+.+ .+.+..+..++..++..+..++.....+++.+. + ++.+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~ 181 (251)
T PF13440_consen 111 RSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKLRL----S----FKFS 181 (251)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccCC----C----chhh
Confidence 999999999999999999999988555555554 345888999999999998887776644322111 1 1223
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhh
Q 015865 164 SIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNE 234 (399)
Q Consensus 164 ~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~~~~~~~s~~ 234 (399)
..| .++.+.|..+...........|.++++.+. +.+++|.|+++.++..... .+..++++...|.++|.
T Consensus 182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 182 WRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334 799999999999999999999999999933 3889999999999999888 89999999999999873
No 29
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.35 E-value=1.5e-10 Score=110.10 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=132.5
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC----CChHHHHHHHHHHHHHhhhHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVG----QDPSISRVAKKYAIFLIPNLFS 76 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~----~~~~~~~~a~~yl~i~~~~~~~ 76 (399)
++..-+..|+...++|.++.++.+++++.....+.++.++. +.+++++.+.+. .++|..+.....+++.++++|+
T Consensus 255 ~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 255 STVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 45566788999999999999999999999999999999987 889999998763 3677788899999999999999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccc
Q 015865 77 YAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSE 149 (399)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 149 (399)
..+...+...+.+.+|+|.|+..++++.++|++++.++. +.+|..|.++|+.++..++++.....++|+..
T Consensus 335 ~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 335 YALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999997777 46999999999999999999999998876544
No 30
>PRK15099 O-antigen translocase; Provisional
Probab=99.34 E-value=6.7e-11 Score=111.90 Aligned_cols=192 Identities=13% Similarity=0.066 Sum_probs=146.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhhcCCChHHHHHHH
Q 015865 169 IRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMAV 247 (399)
Q Consensus 169 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~ 247 (399)
.|-+..................-+.+++- |+++.|..+....+..+...+ ..|++++....++++ ++|+++.++..
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~L-g~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSF-GPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 44455555556666555555554444444 277888888888877766655 778888888888887 68899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHH
Q 015865 248 CAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAY 327 (399)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 327 (399)
..++......++..+++.+.+.+++...+.++++ + ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766664 2 45666666666677888899999999999999999998884
Q ss_pred HHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 328 YLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 328 ~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
++++.+ +++.... .|+.|+++|+.+++.+..+...+.++|
T Consensus 157 -~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 157 -LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred -HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766 3333322 399999999999999988776655544
No 31
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.31 E-value=7.4e-13 Score=108.10 Aligned_cols=112 Identities=23% Similarity=0.423 Sum_probs=107.5
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
++|.++.+||++|++|+++.++..+.++.+..++++++.++ +.+.+++..+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 67899999999999999999999999999999999999998 88889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHH-HHHHHHHHH
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTL-CFHIPLCWA 113 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~l~~~ 113 (399)
...++++|+.||++.+++.++++. ++|++++++
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999999999999999 999998874
No 32
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.31 E-value=1.9e-09 Score=101.55 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=141.8
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC----CChHHHHHHHHHHHHHhhhHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVG----QDPSISRVAKKYAIFLIPNLFS 76 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~----~~~~~~~~a~~yl~i~~~~~~~ 76 (399)
++.+-+..||...++|.++.++..+.++.++.++.++.++. ..+++|+.+.+. .+++.......-++..++++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 45667889999999999999999999999999999999998 899999998762 3456667777889999999999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCC
Q 015865 77 YAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRAS 156 (399)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (399)
+.+..++...+.+.+|+|.|+.+.+++.++|+.+++.+. +.+|..|.++++.++.++++..+++..+|+..... .
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~-- 443 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-G-- 443 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c--
Confidence 999999999999999999999999999999999996666 46889999999999999999999999886654333 2
Q ss_pred CcHHhHHhHHHHHHHHhhhHHHHHHH
Q 015865 157 FSIDVFSSIKEFIRFSVPSAVMVCFE 182 (399)
Q Consensus 157 ~~~~~~~~~k~~l~~~~p~~~~~~~~ 182 (399)
..++..+ ..|..+-..+.....
T Consensus 444 ---~~~~~~~-~~k~~l~~~i~~~~~ 465 (518)
T COG0728 444 ---RGWGLFL-ILKLLLASAIMAAAL 465 (518)
T ss_pred ---chhhHHH-HHHHHHHHHHHHHHH
Confidence 2244344 555555554444433
No 33
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.96 E-value=5.9e-07 Score=86.45 Aligned_cols=205 Identities=11% Similarity=-0.001 Sum_probs=160.6
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc--CCChhhhhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhhcCCCh
Q 015865 164 SIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL--LPNPKLEASVFSLCFTITYLH-YFIPYGFGSTVSTRVSNELGAGNP 240 (399)
Q Consensus 164 ~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~i~~~~-~~~~~~~~~~~~~~~s~~~g~~~~ 240 (399)
.-++.++.......+++.-.+...-|.+++.. +.+ .++-|.|+++++.-+++ -.+...+-.+.-...++...+++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~ 329 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNS 329 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCc
Confidence 35788999999999999999999999999988 664 78899999999987765 356777888888888877655433
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 015865 241 ---------KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVAR 311 (399)
Q Consensus 241 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 311 (399)
++..+.....++....+++.+.......++.+.+++.++.-....+...++.++...|+.+++.+.....+
T Consensus 330 ~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~ 409 (549)
T PF04506_consen 330 KKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVF 409 (549)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHH
Confidence 44666777777888888877777777777778887765543344468899999999999999999999999
Q ss_pred ccCccchhHHHHHHH--HHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 312 GSGWQKIGAFVNLGA--YYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 312 ~~g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
+..+.+-....+-.- .-++.+..+|++... ++|..|..+|+.+...++.+....+++|
T Consensus 410 s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 410 SVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 988876654443332 124555677888665 7899999999999999998888877765
No 34
>PRK10459 colanic acid exporter; Provisional
Probab=98.80 E-value=4.7e-06 Score=80.83 Aligned_cols=135 Identities=17% Similarity=0.055 Sum_probs=111.1
Q ss_pred HHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015865 6 ETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFI 84 (399)
Q Consensus 6 ~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~ 84 (399)
.+..|+. ++|.++.++.+...+.....++++..+. ..++++++..+.+++ ...+...++++.+...+........
T Consensus 269 ~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~ 344 (492)
T PRK10459 269 FPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIG 344 (492)
T ss_pred hHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444553 6788889999999999999898888876 788899888776543 3567788999999999999999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 015865 85 RFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKY 146 (399)
Q Consensus 85 ~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 146 (399)
..+++.||.|.+...+++..++++...+.+. ..+|+.|+++|+.+++.+.+....++..|
T Consensus 345 ~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 345 SLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888887777655544 45799999999999999998888887743
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=1.8e-05 Score=71.84 Aligned_cols=301 Identities=10% Similarity=-0.038 Sum_probs=182.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHH-HHhhh-cCCcchhHHHHHHHHHHHHHHHHHHH
Q 015865 67 AIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWA-LVFKI-KLGSNGAALAVGLSYWFNVLLLGFYI 144 (399)
Q Consensus 67 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~-li~~~-~~g~~g~a~a~~i~~~~~~~~~~~~~ 144 (399)
+.+...+...-.+...+.-..|...+.+.-++..-+..++.-+..+. ++.++ ..++.--|+|.......-.+...+++
T Consensus 126 I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Y 205 (530)
T KOG2864|consen 126 IFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFY 205 (530)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445555555555555566666666777777766666666333333 33333 33444555555555544444223333
Q ss_pred hhccc----------cccccCCCc-H-HhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCC-hhhhhHHHHHHHH
Q 015865 145 KYSSE----------CEKTRASFS-I-DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPN-PKLEASVFSLCFT 211 (399)
Q Consensus 145 ~~~~~----------~~~~~~~~~-~-~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~i~~~ 211 (399)
.+.++ .....++.. . .....-++..+.......+.+.-.+...-|..+++.... +-.+-|.|.+.++
T Consensus 206 f~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n 285 (530)
T KOG2864|consen 206 FYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSN 285 (530)
T ss_pred HHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHh
Confidence 32222 000011110 0 001123445555555566666666666666666653211 1335678888877
Q ss_pred HHHHH-HHhhhhHHHHHHHHHHhhhcCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHH
Q 015865 212 ITYLH-YFIPYGFGSTVSTRVSNELGAGNPKAAKM---AVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLA 287 (399)
Q Consensus 212 i~~~~-~~~~~~~~~~~~~~~s~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 287 (399)
.-.+. -.+...+-...-...+|...+++.|+.++ ...+.++....+++..+......++.+..++++++-....+.
T Consensus 286 ~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~ 365 (530)
T KOG2864|consen 286 YGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGS 365 (530)
T ss_pred hhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCch
Confidence 65544 45677777777777777776665555544 455666666666666666666667778887766543334467
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCccchhHH---HHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHH
Q 015865 288 DMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAF---VNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALL 364 (399)
Q Consensus 288 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~ 364 (399)
..+++++...++.+++.+..+...+.++.+-.-. ..++. -+..+..+|++... +|..|...|+.+...++.+..
T Consensus 366 ~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys 442 (530)
T KOG2864|consen 366 LLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYS 442 (530)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999887665433 22332 25667789999776 577999999999888887766
Q ss_pred HHHHHh
Q 015865 365 ALKIVF 370 (399)
Q Consensus 365 ~~~~~~ 370 (399)
..++++
T Consensus 443 ~~fI~~ 448 (530)
T KOG2864|consen 443 LRFIRH 448 (530)
T ss_pred HHHHHH
Confidence 555554
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.65 E-value=3e-06 Score=81.92 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=111.3
Q ss_pred hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 015865 2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVL 80 (399)
Q Consensus 2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 80 (399)
+...-+..+|...++|.++.++..++.+......+++..+. ..+++++...+.+++.. .+...+.+..++.++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999987 88888998877655432 2667788999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHH
Q 015865 81 QSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLS 132 (399)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~ 132 (399)
......+++.++.+.....+.++.++|.+++.+++ +..|..|++.++ .+
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 99999999999999999999999999999999988 468999999999 44
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.61 E-value=6.9e-06 Score=65.46 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=74.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 015865 67 AIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKY 146 (399)
Q Consensus 67 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 146 (399)
+++.+++.++..+.....+.+++.||+|.....++++.++|++++++++ +++|..|+++|+.++..+......++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999996 67999999999999999999999888875
Q ss_pred cc
Q 015865 147 SS 148 (399)
Q Consensus 147 ~~ 148 (399)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 43
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.32 E-value=4e-06 Score=66.87 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHH
Q 015865 290 VPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIV 369 (399)
Q Consensus 290 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 369 (399)
+++++++.++.+++.....++++.||+|..+..++++ .++++++++.+ .+++|..|+++|+.+++.+......+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998 59999999999 56689999999999999999998888887
Q ss_pred hC
Q 015865 370 FT 371 (399)
Q Consensus 370 ~~ 371 (399)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.27 E-value=0.00019 Score=63.47 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=114.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhhcCCChHHHHHHHH
Q 015865 170 RFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMAVC 248 (399)
Q Consensus 170 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~~ 248 (399)
|-+......+........+...++++.- |+++.|.++....+.++...+ ..|+.++..-..++...+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3444455555555555555555555544 288999999999998887766 678888888777776432 233344443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHHH
Q 015865 249 AIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYY 328 (399)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 328 (399)
.......+.++ +......... .+..++. ...+........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~-i~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSL-IFLLILLIAS----FFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH----HcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333333332 2222222222 3333321 122222222222578888889999999999999988888875
Q ss_pred HHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865 329 LVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 371 (399)
Q Consensus 329 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 371 (399)
+..+.....+... +.+..+...+..++..+..+......+|.
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444444333 33578888888888888877777666643
No 40
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.11 E-value=0.0022 Score=56.12 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=98.3
Q ss_pred HHhCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCc-ch---hH
Q 015865 51 ILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGS-NG---AA 126 (399)
Q Consensus 51 ~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~-~g---~a 126 (399)
..++.++++.+.++..+.++.+--++..+...+++++--.++.......++...+..+++..+++.. ++.. .. -.
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipi 194 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPI 194 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHH
Confidence 4568899999999999999999888899999999988866666666555555555555544445533 1111 11 11
Q ss_pred HHHHHHHHHHHHH--HHHHHhhccccccccCCCcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-CCCh---h
Q 015865 127 LAVGLSYWFNVLL--LGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNP---K 200 (399)
Q Consensus 127 ~a~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~ 200 (399)
+|...+..+-+-+ +.++.. -....+...+..+.+...+++++++.+|.+.....+.....+.+.++++ ++++ +
T Consensus 195 l~~y~g~~vr~t~v~LGy~~~-i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~ 273 (345)
T PF07260_consen 195 LALYAGIAVRFTIVCLGYYQS-IHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAAT 273 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccch
Confidence 2222222221111 112211 1111222222233456679999999999999999999999999999999 5533 2
Q ss_pred hhhHHHHHHHHH
Q 015865 201 LEASVFSLCFTI 212 (399)
Q Consensus 201 ~~~a~~~i~~~i 212 (399)
++++...+.+++
T Consensus 274 ~avavl~~~ypv 285 (345)
T PF07260_consen 274 EAVAVLTATYPV 285 (345)
T ss_pred hhhhhhccccCC
Confidence 445544444443
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.09 E-value=0.00095 Score=58.27 Aligned_cols=165 Identities=12% Similarity=0.230 Sum_probs=106.7
Q ss_pred HHHHHhccCCChhhhhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015865 188 VLILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLL 266 (399)
Q Consensus 188 ~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (399)
....++++.- ++++.|.|+....+..+...+ ..|+.+... +. .++|.++.++..+.......+.++...+...
T Consensus 6 ~~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PF13440_consen 6 LFLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLV----RS-AARDKQDIRSLLRFSLLVSLLLAVILAILAI 79 (251)
T ss_pred HHHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544 278899999999988877765 344433332 22 3466777777777766665555544443322
Q ss_pred HhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCc
Q 015865 267 FCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKG 346 (399)
Q Consensus 267 ~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~ 346 (399)
.... .+ .+++ ...++.+..+..++..........+++.+|.+.......... +..+.....+. ..+.+.
T Consensus 80 ~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 148 (251)
T PF13440_consen 80 LIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNL 148 (251)
T ss_pred HHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhH
Confidence 2222 33 3332 345667777888888999999999999999999999888874 44433333333 223478
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 015865 347 KGLLIGLATGSFVQAALLALKIV 369 (399)
Q Consensus 347 ~G~~~a~~~~~~~~~~~~~~~~~ 369 (399)
.+..++..++.++..+......+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888887766655443
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.93 E-value=0.0045 Score=54.22 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=110.2
Q ss_pred hHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-CCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC
Q 015865 161 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 239 (399)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~ 239 (399)
....++++.++-+|..+++....+.-.+.+.-+++ .-+..+.+|+|+++..+.-++..+...+-+....++.+ +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 35678999999999999999999998887777776 33334669999999999988888877776666555543 2
Q ss_pred hHHHHHHHHHHHHHHHHHH-HH-HHHHHHHhhhhh-cccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Q 015865 240 PKAAKMAVCAIIILAAAEM-VT-VSIVLLFCRHIL-GYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQ 316 (399)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 316 (399)
.+ |+....+......+. .. ..+..-.+++.+ -.+++-++++.+.+...+.++.+..+++++....++++-=.+++
T Consensus 81 rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 81 RS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred hh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 22 222222222222221 11 112222233333 35567889999999999999999999999999999998866666
Q ss_pred chhHHHHHHH
Q 015865 317 KIGAFVNLGA 326 (399)
Q Consensus 317 ~~~~~~~~~~ 326 (399)
......++..
T Consensus 159 ~iV~~aSI~~ 168 (345)
T PF07260_consen 159 WIVGSASIAD 168 (345)
T ss_pred eEeehHHHHH
Confidence 6666666554
No 43
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.14 E-value=0.016 Score=56.28 Aligned_cols=128 Identities=14% Similarity=0.023 Sum_probs=98.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhh--
Q 015865 19 QKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILP-- 95 (399)
Q Consensus 19 ~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~-- 95 (399)
++..+.+...+.+...+|+++..+ -..++.++..++++.-..+.+.+.++..+..+|+.+++.+..++.++..+.+-
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~ 418 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD 418 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence 456677888888888888877776 77777777776544333333455688889999999999999999999776544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 015865 96 -MLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYS 147 (399)
Q Consensus 96 -~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (399)
......+..++-+..+++|+.. ++|..|..+|+.+...+-.++...++++.
T Consensus 419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 419 RYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666667778888875 79999999999999999999999888743
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.02 E-value=1.2 Score=40.54 Aligned_cols=324 Identities=13% Similarity=0.106 Sum_probs=162.9
Q ss_pred hHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015865 5 LETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFI 84 (399)
Q Consensus 5 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~ 84 (399)
.++++|.+.=++|.+++..-......+....+..++.+ .-...++..... =.............=+.-
T Consensus 84 iTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~y-----k~l~~~~FV~m~~~Wi~~ 151 (467)
T COG4267 84 ITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIVY-----KILACALFVGMSLVWILM 151 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45666666666666655554444444443333333322 111122221211 112233333444445556
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCcHHhHHh
Q 015865 85 RFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSS 164 (399)
Q Consensus 85 ~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
.++.+.++.+.....-.++.++...+..++- +.+..|..++..++..+......++..|.-+-++ ...++. ...
T Consensus 152 iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~-~i~FdF--L~~ 225 (467)
T COG4267 152 IFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR-RIGFDF--LLY 225 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc-ccceeh--hhh
Confidence 7788888899988888888888888876665 4689999999999999998888888764433221 111111 111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHH------HHHHHHHHHHHHHh-----hhhHHHHHHHHHHh
Q 015865 165 IKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASV------FSLCFTITYLHYFI-----PYGFGSTVSTRVSN 233 (399)
Q Consensus 165 ~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~i~~~i~~~~~~~-----~~~~~~~~~~~~s~ 233 (399)
.++. ....+.....++.-.+|+++-=..+.+.+..+. |-+.--.......| ...+-+...+.--+
T Consensus 226 ~~~y----~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~ 301 (467)
T COG4267 226 RRKY----PSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKE 301 (467)
T ss_pred hhcc----hHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHH
Confidence 1111 122233445555555565543222212222221 22211111111111 12223333332222
Q ss_pred hh----cC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhH
Q 015865 234 EL----GA-------GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSL 302 (399)
Q Consensus 234 ~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 302 (399)
.+ |. ++.++.....+..+.-.+-+-...++.++++++.+..+++-++- ..+..++-..+.-.+..
T Consensus 302 ~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~vd~lg~s~~i~ 377 (467)
T COG4267 302 YYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYVDVLGVSCQIV 377 (467)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHH
Confidence 11 11 22334444455555555666677788888899999998876542 34445554555444444
Q ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHH-hcCCccchhHHHHH
Q 015865 303 QAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFV-FQLKGKGLLIGLAT 355 (399)
Q Consensus 303 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g~~G~~~a~~~ 355 (399)
-...-.+.--..+-+..+..+..- ...|..++++.... |++--.|...|..+
T Consensus 378 f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~fl 430 (467)
T COG4267 378 FMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASFL 430 (467)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHHH
Confidence 444444444455555555555554 35666666665431 33333344444333
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.12 Score=47.81 Aligned_cols=139 Identities=12% Similarity=-0.020 Sum_probs=94.5
Q ss_pred HHHHhhhcccchh---cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015865 7 TLCGQAYGAEQFQ---KLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQS 82 (399)
Q Consensus 7 ~~is~~~~~~~~~---~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~ 82 (399)
.+.+|...+++.| ++-++....+.+...+|++...+ -.-++..+.+.+++.-........+++.+..+|+.+++.+
T Consensus 304 ~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGi 383 (530)
T KOG2864|consen 304 IYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGI 383 (530)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccH
Confidence 3445555555444 44455566666667777665555 5555666666654422222233558899999999999999
Q ss_pred HHHHHHHcCChh---hHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 015865 83 FIRFFQVQSLIL---PMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYS 147 (399)
Q Consensus 83 ~~~~l~~~~~~~---~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (399)
..+++.+..+.+ ..-....+.++...+++++++-. +|..|..+|+++...+-.+....++++.
T Consensus 384 tEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 384 TEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865433 23344456677778888888864 6779999999999888888887777643
No 46
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=91.94 E-value=8.1 Score=33.82 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=29.2
Q ss_pred HHHhhhhHHHHHHHHHHhhhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 015865 216 HYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAI-IILAAAEMVTVSIVLL 266 (399)
Q Consensus 216 ~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 266 (399)
...+...+.+.+....=++..++|.++.++.-... ....+...+|..+..+
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~ 160 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVAL 160 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777788889999887654332 2233333444433333
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=80.88 E-value=47 Score=30.69 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=93.2
Q ss_pred HHhhhhHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHH
Q 015865 217 YFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLS 296 (399)
Q Consensus 217 ~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~ 296 (399)
..+..+++....-.+|+..=++|.+++.....-........+..++.++. +-+++ . +..+-...+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~--si~yk~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--Y--SIVYKILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--h--hHHHHHHHHHH
Confidence 34456666666677777777788888888777777666666555543211 11222 1 23333344555
Q ss_pred HHHhhHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 297 IIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 297 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
....+...+....+.+.+|-+.....-.++ .++.+.+++++.. .+..|..++.-++..+.......++.+
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666777778888999999999999888888 5777777777744 589999999999988776665555443
No 48
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=73.26 E-value=65 Score=28.38 Aligned_cols=34 Identities=12% Similarity=-0.044 Sum_probs=23.2
Q ss_pred HHHhhhhHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 015865 216 HYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCA 249 (399)
Q Consensus 216 ~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~ 249 (399)
...+...+.+.+....-+...++|.++.++....
T Consensus 110 l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 110 VILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 3344555666677777778888999988765443
No 49
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=59.11 E-value=1.6e+02 Score=27.64 Aligned_cols=37 Identities=5% Similarity=-0.043 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 015865 238 GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY 274 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (399)
.+.++.+++.+++...+.........+.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467799999999999999988888888877777765
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=50.11 E-value=82 Score=26.67 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=31.4
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHhhhHHHHH
Q 015865 17 QFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDP---------SISRVAKKYAIFLIPNLFSYA 78 (399)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~a~~yl~i~~~~~~~~~ 78 (399)
+++...+.+..++.-.+.+-.++++++....++..+++.+. +..+....|+++++.++|...
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 34444455555554444444444444555566666665331 122335566666666666554
No 51
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=45.49 E-value=2.1e+02 Score=25.00 Aligned_cols=11 Identities=0% Similarity=-0.019 Sum_probs=5.0
Q ss_pred HHHhhhcccch
Q 015865 8 LCGQAYGAEQF 18 (399)
Q Consensus 8 ~is~~~~~~~~ 18 (399)
...+.++.++.
T Consensus 106 ~ln~i~~~~~~ 116 (259)
T TIGR00765 106 TLNKIWRVKPR 116 (259)
T ss_pred HHHHHhCCCCC
Confidence 34444554443
No 52
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=45.07 E-value=1e+02 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.9
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 015865 226 TVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMV 259 (399)
Q Consensus 226 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 259 (399)
..+..+-+.+.+||++++++..+++..++.+-..
T Consensus 39 ~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 39 VYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred eechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 3345677788899999999999988888764433
No 53
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=44.59 E-value=2.9e+02 Score=26.37 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=52.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 015865 172 SVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAII 251 (399)
Q Consensus 172 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 251 (399)
+.|.+++.+.--+.-....++.....+++.+++ -+.-....|+|.+++..+++.+|+.+..+-+|...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 678877777666666666677666553333333 23345688999999999999999999988877776655
Q ss_pred HHHH
Q 015865 252 ILAA 255 (399)
Q Consensus 252 ~~~~ 255 (399)
....
T Consensus 450 Afiv 453 (510)
T KOG2468|consen 450 AFIV 453 (510)
T ss_pred HHHH
Confidence 4433
No 54
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=39.36 E-value=1.9e+02 Score=26.83 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 015865 252 ILAAAEMVTVSIV 264 (399)
Q Consensus 252 ~~~~~~~~~~~~~ 264 (399)
++.+-+.+|..++
T Consensus 35 ~lv~~~~lP~liF 47 (385)
T PF03547_consen 35 KLVFNVFLPALIF 47 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344554433
No 55
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=37.89 E-value=3e+02 Score=25.17 Aligned_cols=58 Identities=9% Similarity=-0.061 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHH
Q 015865 281 NIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVL 338 (399)
Q Consensus 281 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l 338 (399)
|..+....+..+.....++..++.....+++-.++...+.....+..|+...|..-+.
T Consensus 230 Eni~ST~aI~~i~~~Q~i~~~iys~~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~l~ 287 (328)
T PF02117_consen 230 ENINSTKAICIISISQFICMFIYSFGVFILRNFRSSISPETFHNIVLWFYTFPYAALS 287 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHhcccHHHHH
Confidence 5566677777788888888888888888888888887777766666677766665555
No 56
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=37.64 E-value=3.7e+02 Score=25.57 Aligned_cols=81 Identities=9% Similarity=0.073 Sum_probs=42.0
Q ss_pred HHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCC
Q 015865 159 IDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG 238 (399)
Q Consensus 159 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~ 238 (399)
+.+.++.++.++.++|..+.-... +-.+..|... +.+.+++++..-+. .+.-. +.+-
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~p~ii-----l~~i~~g~~t--~teaa~~~~~~~l~-------i~~~~---------~~~~ 259 (416)
T PF06808_consen 203 RASLKERWRAFKRAIPALLIPVII-----LGGIYLGIFT--PTEAAAVAVVYALV-------IGLFV---------YRRL 259 (416)
T ss_pred cchHHHHHHHHHhcchHHHHHHHH-----HHHhhhcccc--hhhhhhhhHHHHHH-------HHHhh---------hccc
Confidence 344566667777777654433321 2334445444 45556555533321 11100 4556
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 015865 239 NPKAAKMAVCAIIILAAAEMVTVS 262 (399)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~ 262 (399)
+.++..+....+.+.+..+...+.
T Consensus 260 ~~~~l~~~l~~~~~~~~~i~~iia 283 (416)
T PF06808_consen 260 SWKDLWRALVETARTTGMILFIIA 283 (416)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHH
Confidence 667777777777776665554444
No 57
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=36.18 E-value=2.9e+02 Score=23.99 Aligned_cols=54 Identities=6% Similarity=-0.018 Sum_probs=27.4
Q ss_pred HHHHHH-HhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 015865 64 KKYAIF-LIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK 117 (399)
Q Consensus 64 ~~yl~i-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~ 117 (399)
.+..+. .........+...++-.-+..-+.+.......+..+.-..+...+-..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~Ga~~~~~~~~~~~~~f~~y 215 (260)
T PF03631_consen 161 WNLIRWLVSFLLLFLLFFLLYRFLPNRRVRWRAALPGALFAAVLWFLLSYGFSLY 215 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 444544 233333344444555555555556666655565555555555554443
No 58
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=33.29 E-value=4.1e+02 Score=24.88 Aligned_cols=15 Identities=0% Similarity=-0.015 Sum_probs=7.7
Q ss_pred CChHHHHHHHHHHHH
Q 015865 238 GNPKAAKMAVCAIII 252 (399)
Q Consensus 238 ~~~~~~~~~~~~~~~ 252 (399)
-|.++..|..++.+.
T Consensus 72 ~Dlr~i~~~g~~~l~ 86 (378)
T PF05684_consen 72 ADLRRILRLGGRLLL 86 (378)
T ss_pred ccHHHHHHhhHHHHH
Confidence 355555555554433
No 59
>PRK10739 putative antibiotic transporter; Provisional
Probab=31.14 E-value=3.1e+02 Score=22.88 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHH
Q 015865 227 VSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPF 292 (399)
Q Consensus 227 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i 292 (399)
..|..-..-...+.++-|+..++....+. .+.+.+.++++.+..+|+-+-+..+.+...+..
T Consensus 20 ~ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~ 81 (197)
T PRK10739 20 NLPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGIILF 81 (197)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34555555555667777777766555544 444577788999999998776666666654443
No 60
>PF14184 YrvL: Regulatory protein YrvL
Probab=31.09 E-value=2.5e+02 Score=21.72 Aligned_cols=94 Identities=9% Similarity=0.146 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015865 24 YKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISR-VAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVL 102 (399)
Q Consensus 24 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~a~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 102 (399)
.+.....+...+.++.+........+.+.+|.+-|... ...-.+.....+.|+..+...+...+.-.+-++.. ....
T Consensus 3 ~~~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l 80 (132)
T PF14184_consen 3 KFIIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILL 80 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHH
Confidence 34455555666666666556666777788887644333 33233334567788888777777766666333332 2355
Q ss_pred HHHHHHHHHHHHHhhhc
Q 015865 103 TLCFHIPLCWALVFKIK 119 (399)
Q Consensus 103 ~~~~~i~l~~~li~~~~ 119 (399)
...+...++..-++.-+
T Consensus 81 ~~~id~~~t~~~i~~aD 97 (132)
T PF14184_consen 81 AFIIDFLFTWITIYTAD 97 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777777643
No 61
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=30.64 E-value=3.8e+02 Score=23.66 Aligned_cols=75 Identities=5% Similarity=0.011 Sum_probs=33.2
Q ss_pred HHHhhhcccchhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015865 8 LCGQAYGAEQFQKLGIYKHCSII-SLIIVCFPISLLWIFTDKLLILV-GQDPSISRVAKKYAIFLIPNLFSYAVLQSFIR 85 (399)
Q Consensus 8 ~is~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~ 85 (399)
..=|+..|+|.++.++.-..... ......++..+..++..+..+.+ ..-|+.. .+=+.+..--+|...+.-.++.
T Consensus 123 ~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~~v---~~Gl~vaggmLPAvGfAmLl~~ 199 (265)
T TIGR00822 123 AADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPEVV---THGLQIAGGIIVVVGYAMVLRM 199 (265)
T ss_pred HHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHH---HHHHHHHHhhHHHHHHHHHHHH
Confidence 34455666777777554333222 22223333322255555555433 2223322 2224444444555555544443
No 62
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=29.89 E-value=3e+02 Score=22.20 Aligned_cols=54 Identities=7% Similarity=0.133 Sum_probs=43.7
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Q 015865 226 TVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSS 279 (399)
Q Consensus 226 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (399)
...-.+.+.++++++++.-............+..|+...+....+.+.+.+..+
T Consensus 101 if~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 101 IFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344466777888888998888888888888888999999988888888887654
No 63
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.81 E-value=1.4e+02 Score=26.92 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHhcCCc--------cchhHHHHHHHHHHHHHHHHHHHhCCH
Q 015865 316 QKIGAFVNLGAYYLVGIPIAAVLAFVFQLKG--------KGLLIGLATGSFVQAALLALKIVFTDW 373 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~--------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (399)
.+..-..++++ ++.+|.+.+-+.+ ++.. ...++......++.++..+++++|++|
T Consensus 255 N~~mk~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 255 NEIMKILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344455554 3455666654432 2221 122333333444555566778888877
No 64
>PRK09546 zntB zinc transporter; Reviewed
Probab=28.40 E-value=1.8e+02 Score=26.48 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCc--------cchhHHHHHHHHHHHHHHHHHHHhCCH
Q 015865 321 FVNLGAYYLVGIPIAAVLAFVFQLKG--------KGLLIGLATGSFVQAALLALKIVFTDW 373 (399)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~~~~g~--------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (399)
..++++ ++.+|.+++-+.+ ++.. ...++...+..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444 3455776665432 2221 122333333444455556677888777
No 65
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=27.94 E-value=48 Score=21.13 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCH
Q 015865 353 LATGSFVQAALLALKIVFTDW 373 (399)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~ 373 (399)
.+++-+++.+..+.+.-+.++
T Consensus 11 iVlgvIigNia~LK~sAk~K~ 31 (55)
T PF11446_consen 11 IVLGVIIGNIAALKYSAKMKF 31 (55)
T ss_pred HHHHHHHhHHHHHHHhcccCC
Confidence 344445555555544444333
No 66
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=27.20 E-value=5.2e+02 Score=24.17 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=29.2
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 015865 17 QFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLI 51 (399)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~ 51 (399)
++++.+++++.+...+.+...+...+ ....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999888887 777777765
No 67
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=27.07 E-value=4.1e+02 Score=25.97 Aligned_cols=53 Identities=19% Similarity=0.081 Sum_probs=26.6
Q ss_pred HHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 309 VARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 309 ~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
-.++..|+.....+...+..+-......++ |-.+.-.++..++.......+++
T Consensus 203 ~~kgi~e~~p~~lvag~sfti~q~l~a~~l---------GPelPdIig~lvsl~i~~~flk~ 255 (522)
T COG1620 203 GWKGIKEVWPAILVAGLSFTIPQFLLANFL---------GPELPDIIGGLVSLGILALFLKK 255 (522)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccccHHHHHHHHHHHHHHHHHHh
Confidence 445555655555555554322222222222 33455556666666666666665
No 68
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=25.15 E-value=5.4e+02 Score=23.64 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015865 241 KAAKMAVCAIIILAAAEMVTVSIVLL 266 (399)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (399)
++..+..++.++......+|......
T Consensus 119 ~~~~~~~r~~l~~~~~~~~pl~~~~~ 144 (340)
T PF12794_consen 119 KERVQRLRRQLRWLIWVLVPLLFISI 144 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444
No 69
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=24.74 E-value=3.4e+02 Score=21.20 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=20.8
Q ss_pred hHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHH
Q 015865 5 LETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISL 41 (399)
Q Consensus 5 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 41 (399)
.+-.++|.+|+ +++++....++....+..+...+
T Consensus 13 ~~Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~ 46 (145)
T PF02592_consen 13 ITDIISEVYGK---KAARKAIWIGFLANLLFSLLIWI 46 (145)
T ss_pred HHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788875 45666666666666666444433
No 70
>COG5393 Predicted membrane protein [Function unknown]
Probab=24.49 E-value=3.1e+02 Score=20.60 Aligned_cols=32 Identities=3% Similarity=-0.181 Sum_probs=19.6
Q ss_pred HhcCCccchhHHHHHHHHHHHHHHHHHHHhCC
Q 015865 341 VFQLKGKGLLIGLATGSFVQAALLALKIVFTD 372 (399)
Q Consensus 341 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 372 (399)
.+.+........++.-+.+..+.+.|.+++..
T Consensus 77 ~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks~ 108 (131)
T COG5393 77 DPTYRLNAMIATTAVLLVLALIGCIWTLRKSR 108 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455545555555666777777777777643
No 71
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=24.30 E-value=2.9e+02 Score=27.23 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 015865 351 IGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~ 370 (399)
+...++..+.......+.|+
T Consensus 234 l~~i~g~l~~l~~~~~~~r~ 253 (522)
T PF02652_consen 234 LPGILGGLVGLAVLVLFLRF 253 (522)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.53 E-value=81 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=8.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 015865 348 GLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 348 G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
|+.++.+++-+...++..+.++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333
No 73
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.07 E-value=1.9e+02 Score=20.17 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=20.7
Q ss_pred HHHhhhcccchhcHHHHHHHHHHHHHHHHH
Q 015865 8 LCGQAYGAEQFQKLGIYKHCSIISLIIVCF 37 (399)
Q Consensus 8 ~is~~~~~~~~~~~~~~~~~~~~~~~i~~~ 37 (399)
-+-..+.++|+|++++.-+.+-.++.+..+
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 345566778888888888877776654433
No 74
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=22.93 E-value=4.6e+02 Score=22.00 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=38.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHH
Q 015865 228 STRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 291 (399)
Q Consensus 228 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 291 (399)
.|..-..-+..+.++-|+..++....++ .+...+.++++.+.++|+-+-+..+.+...+.
T Consensus 21 ip~f~~lt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL 80 (203)
T PF01914_consen 21 IPIFLSLTKGMSPKERRRIARRASIIAF----IILLIFAFFGQLILNFFGISLPAFRIAGGIIL 80 (203)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444455555666666777666655544 44556778899999999877665666655444
No 75
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=21.72 E-value=3.3e+02 Score=19.93 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCcHHhHHhHHHHHHHHhhhHHHHH
Q 015865 101 VLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVC 180 (399)
Q Consensus 101 i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 180 (399)
.++.+++...-.++.. ..-....+|+.++..++.+..+...++- -++.+ .+ .+..|+..++..-...+..
T Consensus 7 ~~~~~v~~~~~~~l~~---~~~~~~~~A~~ia~~~~~~~~f~ln~~~-tF~~~----~~--~~~~~~~~~f~~~~~~~~~ 76 (117)
T PF04138_consen 7 VIGTLVDFGVFYLLLE---FLGLNYLLANVIAFIVAIIFNFILNRRF-TFRSR----GR--SSRWRQFLRFFVVYLLGLL 76 (117)
T ss_pred HHHHHHHHHHHHHHHH---HHCcCHHHHHHHHHHHHHHHHHHHHHHH-hccCC----CC--cHHHHHHHHHHHHHHHHHH
Confidence 3444555544444332 2334477788888888877776665522 11111 11 1117777888777666665
Q ss_pred HHHHH
Q 015865 181 FEWWS 185 (399)
Q Consensus 181 ~~~~~ 185 (399)
.....
T Consensus 77 ~~~~~ 81 (117)
T PF04138_consen 77 LNTLI 81 (117)
T ss_pred HHHHH
Confidence 55544
No 76
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.40 E-value=43 Score=26.89 Aligned_cols=7 Identities=14% Similarity=0.392 Sum_probs=3.0
Q ss_pred hhhhhhc
Q 015865 392 RQSQEID 398 (399)
Q Consensus 392 ~~~~~~~ 398 (399)
+++||+|
T Consensus 146 ~ddedeD 152 (163)
T PF06679_consen 146 EDDEDED 152 (163)
T ss_pred CCccccc
Confidence 3344444
No 77
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=21.38 E-value=6e+02 Score=22.79 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=5.2
Q ss_pred HHHHHHhhhcC
Q 015865 227 VSTRVSNELGA 237 (399)
Q Consensus 227 ~~~~~s~~~g~ 237 (399)
.....++.+|+
T Consensus 49 ~~g~l~dr~g~ 59 (379)
T TIGR00881 49 VMGSVSDRSNP 59 (379)
T ss_pred hhhHHHHhhCC
Confidence 33445555543
No 78
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=21.09 E-value=5e+02 Score=21.75 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=39.7
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHH
Q 015865 227 VSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPF 292 (399)
Q Consensus 227 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i 292 (399)
..|.....-+..+.++-++..++....+. .+.+.+.++++.+..+|+-+-+..+.+...+..
T Consensus 23 ~ipvfl~lt~~~~~~~r~~ia~~~~l~a~----~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~ 84 (201)
T TIGR00427 23 NIPIFISLTEYYTAAERNKIAKKANISSF----IILLIFLVFGDTILKLFGISIDAFRIAGGILLF 84 (201)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34555555555666667777665554444 444577778899999998776656666554443
No 79
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=20.75 E-value=4.8e+02 Score=21.40 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=19.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcc
Q 015865 121 GSNGAALAVGLSYWFNVLLLGFYIKYSS 148 (399)
Q Consensus 121 g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 148 (399)
++.|...++.+++.+.++....|..+..
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl~ 162 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNLT 162 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeecc
Confidence 4456667778888888877777776443
No 80
>PRK00523 hypothetical protein; Provisional
Probab=20.56 E-value=1.5e+02 Score=20.06 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=4.1
Q ss_pred hHHhHHHHH
Q 015865 161 VFSSIKEFI 169 (399)
Q Consensus 161 ~~~~~k~~l 169 (399)
+.+.+|.+.
T Consensus 41 ne~mir~M~ 49 (72)
T PRK00523 41 TENMIRAMY 49 (72)
T ss_pred CHHHHHHHH
Confidence 344555443
Done!