Query 015865
Match_columns 399
No_of_seqs 219 out of 2003
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 03:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015865.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015865hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 43.3 61 0.0044 26.6 9.7 15 222-236 73-87 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 17.7 2.3E+02 0.017 22.6 26.6 23 343-365 406-428 (447)
3 d2fyuk1 f.23.15.1 (K:1-53) Sub 8.8 1.6E+02 0.012 16.2 2.9 29 9-37 2-30 (53)
4 d2yvxa3 f.57.1.1 (A:276-448) M 4.2 5.9E+02 0.043 17.7 5.9 42 224-265 56-99 (173)
5 d2iuba2 f.17.3.1 (A:286-349) M 3.5 3.5E+02 0.026 15.0 2.5 8 330-337 15-22 (64)
6 d2d5ba1 a.27.1.1 (A:349-500) M 3.1 5.5E+02 0.04 17.0 3.7 43 15-57 80-123 (152)
7 d1u61a_ a.149.1.1 (A:) Hypothe 3.1 6.5E+02 0.047 16.2 4.7 30 223-252 94-123 (127)
8 d1pv7a_ f.38.1.2 (A:) Lactose 2.8 9.6E+02 0.07 17.7 20.3 27 344-370 376-402 (417)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.1 1.2E+03 0.085 17.0 11.5 38 229-266 183-220 (290)
10 d1j1va_ a.4.12.2 (A:) Chromoso 2.1 7.8E+02 0.057 14.7 3.3 23 228-250 49-71 (94)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=43.32 E-value=61 Score=26.64 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHhhhc
Q 015865 222 GFGSTVSTRVSNELG 236 (399)
Q Consensus 222 ~~~~~~~~~~s~~~g 236 (399)
+++.-..-.+++.+|
T Consensus 73 ~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 73 GFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcC
Confidence 333334444555444
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.69 E-value=2.3e+02 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=11.7
Q ss_pred cCCccchhHHHHHHHHHHHHHHH
Q 015865 343 QLKGKGLLIGLATGSFVQAALLA 365 (399)
Q Consensus 343 ~~g~~G~~~a~~~~~~~~~~~~~ 365 (399)
..|..+..+......++..++..
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHH
Confidence 45665555555444444444443
No 3
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.82 E-value=1.6e+02 Score=16.21 Aligned_cols=29 Identities=7% Similarity=-0.119 Sum_probs=21.3
Q ss_pred HHhhhcccchhcHHHHHHHHHHHHHHHHH
Q 015865 9 CGQAYGAEQFQKLGIYKHCSIISLIIVCF 37 (399)
Q Consensus 9 is~~~~~~~~~~~~~~~~~~~~~~~i~~~ 37 (399)
.++.+|++..|-++.-+.+...+...-++
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 57788888888888887777766665544
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.24 E-value=5.9e+02 Score=17.70 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhc--CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015865 224 GSTVSTRVSNELG--AGNPKAAKMAVCAIIILAAAEMVTVSIVL 265 (399)
Q Consensus 224 ~~~~~~~~s~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (399)
++-..+.+-|.+. +-+.++.++..++=...+++.+..++++.
T Consensus 56 G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~ 99 (173)
T d2yvxa3 56 GNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLL 99 (173)
T ss_dssp HHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555443 33556677777777777777776665543
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.48 E-value=3.5e+02 Score=15.02 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=3.3
Q ss_pred HhHHHHHH
Q 015865 330 VGIPIAAV 337 (399)
Q Consensus 330 ~~i~~~~~ 337 (399)
+-+|.+.+
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 6
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=3.09 E-value=5.5e+02 Score=16.99 Aligned_cols=43 Identities=9% Similarity=-0.040 Sum_probs=23.6
Q ss_pred ccchhcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCh
Q 015865 15 AEQFQKLGIYKHCSIISLIIVCFPISLLWI-FTDKLLILVGQDP 57 (399)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~~ 57 (399)
++|.++++..+..++-..-.+++.+..++. .+..+...++.++
T Consensus 80 k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~ 123 (152)
T d2d5ba1 80 KKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 123 (152)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCc
Confidence 345566666666666555555555555432 3455556666543
No 7
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=3.07 E-value=6.5e+02 Score=16.21 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 015865 223 FGSTVSTRVSNELGAGNPKAAKMAVCAIII 252 (399)
Q Consensus 223 ~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~ 252 (399)
.++++-++++..|=.++++++++.+.+.+.
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~~ 123 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAIA 123 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678889999988877889999998877643
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.83 E-value=9.6e+02 Score=17.70 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=12.1
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHh
Q 015865 344 LKGKGLLIGLATGSFVQAALLALKIVF 370 (399)
Q Consensus 344 ~g~~G~~~a~~~~~~~~~~~~~~~~~~ 370 (399)
.|.....+...+...+..++..+.+++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455555444444444444444444443
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.10 E-value=1.2e+03 Score=16.96 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=28.8
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015865 229 TRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLL 266 (399)
Q Consensus 229 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (399)
-..++..|+++.+..++...-.++=+...+........
T Consensus 183 ~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~ 220 (290)
T d2r6gg1 183 EEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAA 220 (290)
T ss_dssp HHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhh
Confidence 45788889999999999988888877777666554443
No 10
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.05 E-value=7.8e+02 Score=14.71 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCChHHHHHHHHHH
Q 015865 228 STRVSNELGAGNPKAAKMAVCAI 250 (399)
Q Consensus 228 ~~~~s~~~g~~~~~~~~~~~~~~ 250 (399)
.+-+++.+|.+|+..+-...++.
T Consensus 49 l~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 49 LPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHH
Done!