BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015866
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 56/398 (14%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R G + ++YD LPE D
Sbjct: 17 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 76 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
D RL LGA + E GLGDD E W W + + FF G + I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV--- 229
+ +L+ VH M + + G+L +Y N+
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 230 ---CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
A+ E+E L AS EG++ + + RR +L +
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAI 374
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 56/398 (14%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R G + ++YD LPE D
Sbjct: 17 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 76 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
D RL LGA + E GLGDD E W W + + FF G + I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV--- 229
+ +L+ VH M + + G+L +Y N+
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 230 ---CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
A+ E+E L AS EG++ + + RR +L +
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAI 374
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 56/398 (14%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R G + ++YD LPE D
Sbjct: 17 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 76 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
D RL LGA + E GLGDD E W W + + FF G + I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV--- 229
+ +L+ VH M + + G+L +Y N+
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 230 ---CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
A+ E+E L AS EG++ + + RR +L +
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAI 374
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 177/398 (44%), Gaps = 56/398 (14%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R RG D D LPE D
Sbjct: 10 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 68
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 69 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 125
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
D RL LGA + E GLGDD E W W + + FF G + I
Sbjct: 126 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 179
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV--- 229
+ +L+ VH M + + G+L +Y N+
Sbjct: 180 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 214
Query: 230 ---CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 215 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 274
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +
Sbjct: 275 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQY 329
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
A+ E+E L AS EG++ + + RR +L +
Sbjct: 330 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAI 367
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 180/395 (45%), Gaps = 50/395 (12%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R RG D D LPE D
Sbjct: 14 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 72
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 73 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 129
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
D RL LGA + E GLGDD E W W + + G + I +
Sbjct: 130 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWLAVCE-HFGVEATGEESSIRQY 186
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV------ 229
+L+ VH +D++ ++ + G+L +Y N+
Sbjct: 187 ELV----VH----------------TDIDAAKVYMG-----EMGRLKSYENQKPPFDAKN 221
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 222 PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 281
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +A+
Sbjct: 282 DLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASE 336
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
E+E L+ AS EG++ + + RR +L +
Sbjct: 337 PSEQELLRKMASSSGEGKELYLSWVVEARRHILAI 371
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 180/395 (45%), Gaps = 50/395 (12%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R RG D D LPE D
Sbjct: 14 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 72
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 73 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 129
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
D RL LGA + E GLGDD E W W + + G + I +
Sbjct: 130 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWLAVCE-HFGVEATGEESSIRQY 186
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV------ 229
+L+ VH +D++ ++ + G+L +Y N+
Sbjct: 187 ELV----VH----------------TDIDAAKVYMG-----EMGRLKSYENQKPPFDAKN 221
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 222 PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 281
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +A+
Sbjct: 282 DLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASE 336
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
E+E L+ AS EG++ + + RR +L +
Sbjct: 337 PSEQELLRKMASSSGEGKELYLSWVVEARRHILAI 371
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 175/395 (44%), Gaps = 50/395 (12%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R RG D D LPE D
Sbjct: 14 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 72
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 73 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 129
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
D RL LGA + E GLGDD E W W P+ E
Sbjct: 130 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFW-------PAVCEHFGVEATGEE 180
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV------ 229
I Q ++ + + ID A + G+L +Y N+
Sbjct: 181 SSIRQYEL-VVHTDIDAAKVYMG------------------EMGRLKSYENQKPPFDAKN 221
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 222 PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 281
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +A+
Sbjct: 282 DLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASE 336
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
E+E L+ AS EG++ + + RR +L +
Sbjct: 337 PSEQELLRKMASSSGEGKELYLSWVVEARRHILAI 371
>pdb|3OJW|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
Length = 622
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 178/398 (44%), Gaps = 56/398 (14%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R G + ++YD LPE D
Sbjct: 17 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD + + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 76 LVVFAMATYGEGDPTCNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
D RL LGA + E GLGDD E W W + + FF G + I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVAE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV--- 229
+ +L+ VH M + + G+L +Y N+
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 230 ---CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPTPTTYRTALTYYLDITN-PPRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
A+ E+E L AS EG++ + + RR +L +
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAI 374
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 182/395 (46%), Gaps = 54/395 (13%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R G + ++YD LPE D
Sbjct: 17 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 76 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
D RL LGA + E GLGDD +G L+ + WR F+P + E
Sbjct: 133 DQRLEQLGAQRIFELGLGDD------DGNLEEDFIT-WRE------QFWPAVCEFFGVEA 179
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV------ 229
I Q ++ + + +D A + G+L +Y N+
Sbjct: 180 SSIRQYEL-VVHEDMDVA------------------KVYTGEMGRLKSYENQKPPFDAKN 220
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
FL + G+ + + H E + + I YE GD + + P+ D A V+ +
Sbjct: 221 PFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGA 280
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
D D ++++ + + ++ K+ P RT + +D+T+ PR ++ +A+
Sbjct: 281 DLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQYASE 335
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
E+E L AS EG++ + + RR +L +
Sbjct: 336 PSEQEHLHKMASSSGEGKELYLSWVVEARRHILAI 370
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 170/389 (43%), Gaps = 44/389 (11%)
Query: 4 EKRNKLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVIFV-V 61
E L+LYASQTG A D A++ +E + V+ V++YD L + ++ + +
Sbjct: 36 ENNKNYLVLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFI 95
Query: 62 STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
ST G+GD PD F F+ L +RY +FGLG+S Y+ FN AKK + L
Sbjct: 96 STYGEGDFPDGAVNFEDFICNAEAGA--LSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSA 153
Query: 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQP 181
GA + + G DD + E + W+ D ++E +K D+
Sbjct: 154 AGAIRLGKLGEADDGAGTTDEDYM------AWK--------------DSILEVLK--DEL 191
Query: 182 KVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAV------CFLKMI 235
V T L +D++ ++ + G+L +Y N+ FL +
Sbjct: 192 GVEATGEESSIRQYELVVHTDIDAAKVYMG-----EMGRLKSYENQKPPFDAKNPFLAAV 246
Query: 236 KNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALI 295
G+ + + H E + + I YE GD + + P+ D A V+ + D D ++
Sbjct: 247 TTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVM 306
Query: 296 TVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKER 355
++ + + ++ K+ P RT + +D+T+ PR ++ +A+ E+E
Sbjct: 307 SLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQEL 361
Query: 356 LQYFASP--EGRDDLYKYNQKERRTVLEV 382
L+ AS EG++ + + RR +L +
Sbjct: 362 LRKMASSSGEGKELYLSWVVEARRHILAI 390
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 156/358 (43%), Gaps = 31/358 (8%)
Query: 4 EKRNKLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVIFV-V 61
E L+LYASQTG A D A++ +E + V+ V++YD L + ++ + +
Sbjct: 47 ENNKNYLVLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFI 106
Query: 62 STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
ST G+GD PD F F+ L +RY +FGLG+S Y+ FN AKK + L
Sbjct: 107 STYGEGDFPDGAVNFEDFICNAEAGA--LSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSA 164
Query: 122 LGATAVVERGLGDDQHPSGYEGAL---DPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLI 178
GA + + G DD + E + D + L LH + +E K
Sbjct: 165 AGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDE------------QEAKFT 212
Query: 179 DQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQ 238
Q + + D+ + +A L ++ R+ +L ++ ++K++
Sbjct: 213 SQFQYTVLNEITDSMSLGEPSAHYLPSHQLN----RNADGIQLGPFDLSQPYIAPIVKSR 268
Query: 239 PLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQ 298
L S ++ H EF+ + I+Y GD L + PS V+ F+ NLDP+ + ++
Sbjct: 269 ELFSSND-RNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK 327
Query: 299 HKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERL 356
+ +P T + ++ ++E+T V+ R F + FA KE+L
Sbjct: 328 PLDPTVKVP--FPTPTTIGAAIKHYLEITGPVS-----RQLFSSLIQFAPNADVKEKL 378
>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human
Cytochrome P450 Reductase At 1.93a Resolution
Length = 181
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 1 MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
M++ RN +++ Y SQTG A + A R+ +++ R RG D D LPE D
Sbjct: 13 MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 71
Query: 57 -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
V+F ++T G+GD D+ + F+ +L + + L GV++AVFGLG+ Y+ FN + K +
Sbjct: 72 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 128
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153
D RL LGA + E GLGDD E W W
Sbjct: 129 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFW 164
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 31/358 (8%)
Query: 4 EKRNKLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVIFV-V 61
E L+LYASQTG A A+ +E + V+ V++YD L + ++ + +
Sbjct: 47 ENNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFI 106
Query: 62 STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
ST G+GD PD F F+ L +RY +FGLG+S Y+ FN AKK + L
Sbjct: 107 STYGEGDFPDGAVNFEDFICNAEAGA--LSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSA 164
Query: 122 LGATAVVERGLGDDQHPSGYEGAL---DPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLI 178
GA + + G DD + E + D + L LH + +E K
Sbjct: 165 AGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDE------------QEAKFT 212
Query: 179 DQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQ 238
Q + + D+ + +A L ++ R+ +L ++ ++K++
Sbjct: 213 SQFQYTVLNEITDSMSLGEPSAHYLPSHQLN----RNADGIQLGPFDLSQPYIAPIVKSR 268
Query: 239 PLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQ 298
L S ++ H EF+ + I+Y GD L + PS V+ F+ NLDP+ + ++
Sbjct: 269 ELFSSND-RNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK 327
Query: 299 HKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERL 356
+ +P T + ++ ++E+T V+ R F + FA KE+L
Sbjct: 328 PLDPTVKVP--FPTPTTIGAAIKHYLEITGPVS-----RQLFSSLIQFAPNADVKEKL 378
>pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|C Chain C, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|E Chain E, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|G Chain G, Human Inos Reductase And Calmodulin Complex
Length = 219
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTG 65
R ++ IL+A++TG + A +G P VV +D Y CL EE ++ V ST G
Sbjct: 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVV-CMDKYRLSCLEEERLLLVVTSTFG 98
Query: 66 QGDTP-DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGA 124
GD P + K+ + K L+ ++ RYAVFGLG S Y +F A +D +L LGA
Sbjct: 99 NGDCPGNGEKLKKSLFMLKELNNKF----RYAVFGLGSSMYPRFCAFAHDIDQKLSHLGA 154
Query: 125 TAVVERGLGDDQHPSGYEGALDPW 148
+ + G GD+ SG E A W
Sbjct: 155 SQLTPMGEGDEL--SGQEDAFRSW 176
>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The
Escherichia Coli Sulfite Reductase
Length = 167
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD 68
+ I+ ASQTGNA AE + + V + DY + + E +I V ST G+G+
Sbjct: 12 ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGE 71
Query: 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128
P+ +FL K K LE +AVF LGD+ Y+ F K D++L +LG ++
Sbjct: 72 PPEEAVALHKFLFSKKAPK--LENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLL 129
Query: 129 ERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFP 165
+R D + Y+ A W + L P P
Sbjct: 130 DRVDADVE----YQAAASEWRARVVDALKSRAPVAAP 162
>pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 191
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Query: 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD 68
LL+LY S G A A + + +G V +D + A LP E V+ +V+ + G
Sbjct: 24 LLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNLPREGAVL-IVTASYNGH 81
Query: 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAV 127
PD+ K F +L Q S + ++GVRY+VFG GD + + V +D L GA +
Sbjct: 82 PPDNAKQFVDWLDQASADE--VKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENI 139
Query: 128 VERGLGDDQHPSGYEGALDPWMRSLW 153
+RG D +EG + W +W
Sbjct: 140 ADRGEAD--ASDDFEGTYEEWREHMW 163
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/424 (22%), Positives = 166/424 (39%), Gaps = 71/424 (16%)
Query: 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64
KR K ILYA++TG + A+ + E + +++YD L E V+ V ST
Sbjct: 10 KRVKATILYATETGKSQAYAKTLC-EIFKHAFDAKAMSMEEYDIVHLEHEALVLVVTSTF 68
Query: 65 GQGDTPDSMKVFWRFLLQ-----------KSLSKQW------------------------ 89
G GD P++ + F L++ KS ++
Sbjct: 69 GNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFE 128
Query: 90 ----LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL 145
L VR++VFGLG Y F +D L +LG +++ GD+ G E A
Sbjct: 129 STGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDEL--CGQEEAF 186
Query: 146 DPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEG 205
W + +++ + F G D IE +P + I N S N L
Sbjct: 187 RTWAKKVFKAACDV----FCVGDDVNIE------KPNNSL----ISNDRSWKRNKFRL-- 230
Query: 206 IRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFV-SAAIEYE 264
+ A ++ G LSN + K V +++ Q L S + + ++Y+
Sbjct: 231 --TYVAEAPDLTQG-LSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQ 287
Query: 265 VGDVLEILPSQDPAAVDTFIQRCNLDPDA--LITVQHKEMKNYLPDIHKNTTE----VPI 318
GD L + P V+ I+R P A ++ V+ E +N + N + P
Sbjct: 288 PGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPC 347
Query: 319 KLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRT 378
+ + +D+T+ P + + AT E EK+RL + +G + ++ + T
Sbjct: 348 TIFQAFKYYLDITTP-PTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPT 404
Query: 379 VLEV 382
++EV
Sbjct: 405 MVEV 408
>pdb|1J9E|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris S35c Mutant At 1.44 Angstrom Resolution
pdb|1XT6|A Chain A, S35c Flavodoxin Mutant In The Semiquinone State
Length = 147
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDCRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 62 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1BU5|A Chain A, X-Ray Crystal Structure Of The Desulfovibrio Vulgaris
(Hildenborough) Apoflavodoxin-Riboflavin Complex
pdb|1BU5|B Chain B, X-Ray Crystal Structure Of The Desulfovibrio Vulgaris
(Hildenborough) Apoflavodoxin-Riboflavin Complex
Length = 147
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 62 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1J8Q|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris Wild-Type At 1.35 Angstrom Resolution
pdb|2FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|3FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|4FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|5FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
Length = 147
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 62 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1FX1|A Chain A, A Crystallographic Structural Study Of The Oxidation
States Of Desulfovibrio Vulgaris Flavodoxin
Length = 148
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I R+ G V R +A L E D V+ ST G
Sbjct: 3 KALIVYGSTTGNTEYTAETIARQLANAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 62
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 63 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 118
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 119 -IVQDGLRIDGDP 130
>pdb|4HEQ|A Chain A, The Crystal Structure Of Flavodoxin From Desulfovibrio
Gigas
pdb|4HEQ|B Chain B, The Crystal Structure Of Flavodoxin From Desulfovibrio
Gigas
Length = 146
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I + G V V D A L E D V+ ST G
Sbjct: 3 KALIVYGSTTGNTEGVAEAIAKTLNSEGMETTVVNVADVTAPGLAEGYDVVLLGCSTWGD 62
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
D +++ F+ L + L + L+ + VFG GDS Y F ++ + +LGAT
Sbjct: 63 ----DEIELQEDFVPLYEDLDRAGLKDKKVGVFGCGDSSYTYFCGAVDVIEKKAEELGAT 118
Query: 126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156
+V L D P E LD W R + R+
Sbjct: 119 -LVASSLKIDGEPDSAE-VLD-WAREVLARV 146
>pdb|1J9G|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris S64c Mutant, Monomer Oxidised, At 2.4 Angstrom
Resolution
Length = 147
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
D +++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 62 ----DCIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1WSB|A Chain A, Flavodoxin Mutant- S64c
pdb|1WSW|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Dimer, Semiquinone State
pdb|1XYV|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Monomer, Semiquinone State
pdb|1XYY|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Homodimer, Oxidised State
Length = 148
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 3 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 62
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
D +++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 63 ----DCIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 118
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 119 -IVQDGLRIDGDP 130
>pdb|1C7E|A Chain A, D95e Hydroquinone Flavodoxin Mutant From D. Vulgaris
pdb|1C7E|B Chain B, D95e Hydroquinone Flavodoxin Mutant From D. Vulgaris
pdb|1C7F|A Chain A, D95e Oxidized Flavodoxin Mutant From D. Vulgaris
pdb|1C7F|B Chain B, D95e Oxidized Flavodoxin Mutant From D. Vulgaris
Length = 147
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG G+S Y+ F ++ +L +LGA
Sbjct: 62 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGESSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1F4P|A Chain A, Y98w Flavodoxin Mutant 1.5a (D. Vulgaris)
Length = 147
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS ++ F ++ +L +LGA
Sbjct: 62 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1I1O|A Chain A, Room Temperature Crystal Structure Flavodoxin D. Vulgaris
Mutant Y98h At 2.0 Ang. Resolution
Length = 147
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS ++ F ++ +L +LGA
Sbjct: 62 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSHEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1AKT|A Chain A, G61n Oxidized Flavodoxin Mutant
Length = 147
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTW-- 59
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 60 --NDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1AZL|A Chain A, G61v Flavodoxin Mutant From Desulfovibrio Vulgaris
Length = 147
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTW-- 59
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 60 --VDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1AKR|A Chain A, G61a Oxidized Flavodoxin Mutant
Length = 147
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTW-- 59
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 60 --ADDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1AKW|A Chain A, G61l Oxidized Flavodoxin Mutant
Length = 147
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTW-- 59
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG GDS Y+ F ++ +L +LGA
Sbjct: 60 --LDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|1AKQ|A Chain A, D95a Oxidized Flavodoxin Mutant From D. Vulgaris
pdb|1AKU|A Chain A, D95a Hydroquinone Flavodoxin Mutant From D. Vulgaris
pdb|1AKV|A Chain A, D95a Semiquinone Flavodoxin Mutant From D. Vulgaris
Length = 147
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
K LI+Y S TGN AE I RE G V R +A L E D V+ ST G
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67 GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
DS+++ F+ L SL + +G + A FG G S Y+ F ++ +L +LGA
Sbjct: 62 ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGASSYEYFCGAVDAIEEKLKNLGAE 117
Query: 126 AVVERGLGDDQHP 138
+V+ GL D P
Sbjct: 118 -IVQDGLRIDGDP 129
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 219 GKLSNYNNKAVCF------LKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEIL 272
G+L +Y N+ F L + G+ + + H E + + I YE GD + +
Sbjct: 45 GRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVY 104
Query: 273 PSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTS 332
P+ D A V+ + D D ++++ + + ++ K+ P RT + +D+T+
Sbjct: 105 PANDSALVNQLGKILGADLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN 160
Query: 333 ASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
PR ++ +A+ E+E L+ AS EG++ + + RR +L +
Sbjct: 161 -PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAI 211
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 219 GKLSNYNNKAVCF------LKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEIL 272
G+L +Y N+ F L + G+ + + H E + + I YE GD + +
Sbjct: 45 GRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVY 104
Query: 273 PSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTS 332
P+ D A V+ + D D ++++ + + ++ K+ P RT + +D+T+
Sbjct: 105 PANDSALVNQLGKILGADLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN 160
Query: 333 ASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV 382
PR ++ +A+ E+E L+ AS EG++ + + RR +L +
Sbjct: 161 -PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAI 211
>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60
pdb|1DDG|B Chain B, Crystal Structure Of Sir-Fp60
pdb|1DDI|A Chain A, Crystal Structure Of Sir-Fp60
Length = 374
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 222 SNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVD 281
S Y+ A + NQ +T S KDV H E + + + Y+ GD L + DPA V
Sbjct: 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63
Query: 282 TFIQRCNLDPDALITVQHKEM 302
++ L D +TV+ K +
Sbjct: 64 ELVELLWLKGDEPVTVEGKTL 84
>pdb|3F6R|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|C Chain C, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6S|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F90|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
Length = 148
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTG 65
+K+LI++ S TGN A+++ G V + D A L + D V+F S G
Sbjct: 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWG 61
Query: 66 QGDTP---DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
D D + +F F + L G + A F GD Y+ F ++ R +L
Sbjct: 62 MEDLEMQDDFLSLFEEF------DRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKEL 115
Query: 123 GATAVVE 129
GAT + E
Sbjct: 116 GATIIAE 122
>pdb|2HNA|A Chain A, Solution Structure Of A Bacterial Apo-Flavodoxin
pdb|2HNB|A Chain A, Solution Structure Of A Bacterial Holo-Flavodoxin
Length = 147
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 51 LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNF 110
LP + + ST G GD PD++ F+ L ++ K L VR+ G+G Y F
Sbjct: 44 LPASGIWLVISSTHGAGDIPDNLSPFYEALQEQ---KPDLSAVRFGAIGIGSREYDTFCG 100
Query: 111 VAKKLDNRLLDLGA 124
KL+ L + GA
Sbjct: 101 AIDKLEAELKNSGA 114
>pdb|2FCR|A Chain A, Crystal Structure Of Oxidized Flavodoxin From A Red Alga
Chondrus Crispus Refined At 1.8 Angstroms Resolution:
Description Of The Flavin Mononucleotide Binding Site
Length = 173
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 8 KLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ 66
K+ I +++ TGN + A+ IG+ + P+ V V D + L + D + T
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKADAPIDVDDV--TDPQALKDYDLLFLGAPTWNT 58
Query: 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNF 110
G + W L L + ++ + A+FGLGD+ NF
Sbjct: 59 GADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNF 102
>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing
Fnr-Like Module Of Human Methionine Synthase Reductase
Length = 539
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 9/173 (5%)
Query: 204 EGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEY 263
E +++ L+ + ++S + V + + K LT + + K E + + Y
Sbjct: 89 EYLQVHLQESLGQEESQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSY 148
Query: 264 EVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF 323
+ GD ++ + V + +QR L+ +H + D K +P +
Sbjct: 149 QPGDAFSVICPNSDSEVQSLLQRLQLEDKR----EHXVLLKIKADTKKKGATLPQHIPAG 204
Query: 324 VELTMDVT-----SASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKY 371
L T A P++ F + + + EK RLQ S +G D ++
Sbjct: 205 CSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRF 257
>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of
Human Methionine Synthase Reductase
Length = 539
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 9/173 (5%)
Query: 204 EGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEY 263
E +++ L+ + ++S + V + + K LT + + K E + + Y
Sbjct: 89 EYLQVHLQESLGQEESQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSY 148
Query: 264 EVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF 323
+ GD ++ + V + +QR L+ +H + D K +P +
Sbjct: 149 QPGDAFSVICPNSDSEVQSLLQRLQLEDKR----EHXVLLKIKADTKKKGATLPQHIPAG 204
Query: 324 VELTMDVT-----SASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKY 371
L T A P++ F + + + EK RLQ S +G D ++
Sbjct: 205 XSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRF 257
>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W)
pdb|1W87|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
pdb|1W87|B Chain B, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By
Leu (V136l)
Length = 295
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 56
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By
Asp (L78d)
Length = 295
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 56
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Glu (K75e)
Length = 295
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 56
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 56
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed
With Nadp
Length = 303
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 15 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 64
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 56
>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S)
Length = 304
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By
Pro (L263p)
Length = 303
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 15 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 64
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 15 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 64
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 15 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 64
>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+
Reductase From The Cyanobacterium Anabaena Pcc 7119 At
2.25 Angstroms
Length = 304
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72
Replaced By Glu (k72e)
Length = 304
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 16 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 65
>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 15 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 64
>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By
Glu (r264e)
Length = 295
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 56
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 15 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 64
>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By
Phe (Y303f)
Length = 303
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 273
Y A K+I N+PL K G V H +F+ ++Y G + I+P
Sbjct: 15 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIP 64
>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
FadNADP+ Domain At 1.9a Resolution
Length = 435
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 221 LSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFV-SAAIEYEVGDVLEILPSQDPAA 279
LSN + K V +++ Q L S + + ++Y+ GD L + P
Sbjct: 22 LSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDL 81
Query: 280 VDTFIQRCNLDPDA--LITVQHKEMKNYLPDIHKNTTE----VPIKLRTFVELTMDVTSA 333
V+ I+R P A ++ V+ E +N + N + P + + +D+T+
Sbjct: 82 VNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTP 141
Query: 334 SPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEV 382
P + + AT E EK+RL + +G + ++ + T++EV
Sbjct: 142 -PTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPTMVEV 187
>pdb|2KQ9|A Chain A, Solution Structure Of Dnak Suppressor Protein From
Agrobacterium Tumefaciens C58. Northeast Structural
Genomics Consortium Target Att12ONTARIO CENTER FOR
STRUCTURAL PROTEOMICS TARGET ATC0888
Length = 112
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 133 GDDQHPSGYEGALDPWMRSLWRRLHQIDPSF-FPQGP-----------DHVIEEMKLIDQ 180
G + YE L R L+RRLH+I+ F P+ P D V++E+ + Q
Sbjct: 4 GKSMNVESYEKILRDRQRELYRRLHKIEADFEEPRNPDDEDRASERSNDEVLDELGQVGQ 63
Query: 181 PKVHITYHSIDNAASRLSNAS 201
++ +ID A +R+++ +
Sbjct: 64 DEL----RAIDAALARIASGT 80
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 223 NYNNKAVCFLKMIKNQP-LTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVD 281
N NN V +++K P LT + D H F + + +E + ++D
Sbjct: 377 NSNNDTVQIQEVVKKLPELTAKKNTIDTHXNIFAALLSQLESK--------------SLD 422
Query: 282 TFIQRCNLDPDALITVQHKEMKNYLPDIHKN--TTEVPIKLRTFVELTMDVTSASPRRYF 339
TF + DP + T ++ DI K+ T + KLR+F+ L + T+ P+ +
Sbjct: 423 TFFE-VEQDPGSTKT------RSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFV 475
Query: 340 FEVMSYFATAEHEKERLQY 358
V +YF +++ L+Y
Sbjct: 476 QNVENYFKENDYDINALKY 494
>pdb|3KAP|A Chain A, Flavodoxin From Desulfovibrio Desulfuricans Atcc 27774
(Oxidized Form)
pdb|3KAQ|A Chain A, Flavodoxin From D. Desulfuricans (Semireduced Form)
Length = 147
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTG 65
+K+LIL+ S TGN A+++ G V + + A L + D V+ S G
Sbjct: 1 SKVLILFGSSTGNTESIAQKLEELVAAGGHEVTLLNAAEASADNLADGYDAVLMGCSAWG 60
Query: 66 QGDTP---DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
D D +F + L+G + A F GD Y+ + ++ + L
Sbjct: 61 MEDLELQDDFAPLF------DEMENMGLKGKKLAAFASGDMEYEHYCGAVPAIEEKARGL 114
Query: 123 GATAVVE 129
GA + E
Sbjct: 115 GAEVICE 121
>pdb|2INY|A Chain A, Nanoporous Crystals Of Chicken Embryo Lethal Orphan (celo)
Adenovirus Major Coat Protein, Hexon
Length = 942
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 326 LTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 380
LT D+T+A+PR +F + T E+ E LQ F S G + K R+TV+
Sbjct: 4 LTPDLTTATPRLQYFHIAGP-GTREYLSEDLQQFISATG--SYFDLKNKFRQTVV 55
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGY 141
W++ R V G + GY +AK D+ + V + GL D + Y
Sbjct: 598 WVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERY 650
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 163 FFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSN 199
F P PD + KL+ PK+++T + I + +RL N
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 8/50 (16%), Positives = 23/50 (46%)
Query: 110 FVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159
+ D ++ D G +++ D+ P+G + + ++ + W R ++
Sbjct: 144 LINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEYVATRWYRAPEV 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,010,034
Number of Sequences: 62578
Number of extensions: 507027
Number of successful extensions: 1372
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 94
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)