Query 015866
Match_columns 399
No_of_seqs 217 out of 2176
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 3.6E-71 7.7E-76 537.8 28.9 354 7-392 1-355 (574)
2 TIGR01931 cysJ sulfite reducta 100.0 1E-57 2.2E-62 478.2 35.2 313 5-393 57-370 (597)
3 PRK10953 cysJ sulfite reductas 100.0 2.5E-57 5.5E-62 473.3 34.9 313 5-393 60-373 (600)
4 KOG1158 NADP/FAD dependent oxi 100.0 1.6E-49 3.4E-54 408.7 25.2 365 4-396 44-412 (645)
5 COG0369 CysJ Sulfite reductase 100.0 5E-46 1.1E-50 383.5 25.9 314 6-394 47-361 (587)
6 PRK09004 FMN-binding protein M 100.0 4.6E-36 1E-40 260.6 16.9 146 6-156 1-146 (146)
7 PRK08105 flavodoxin; Provision 100.0 9.6E-36 2.1E-40 259.5 17.3 147 6-156 1-147 (149)
8 PRK05723 flavodoxin; Provision 100.0 3.2E-35 6.9E-40 256.2 16.1 147 7-157 1-150 (151)
9 PF00667 FAD_binding_1: FAD bi 100.0 2.8E-34 6.1E-39 266.3 16.3 160 230-395 8-168 (219)
10 cd06203 methionine_synthase_re 100.0 2.9E-30 6.3E-35 259.5 18.5 156 234-395 2-163 (398)
11 cd06204 CYPOR NADPH cytochrome 100.0 1.2E-29 2.6E-34 256.3 18.1 154 233-395 9-167 (416)
12 PF00258 Flavodoxin_1: Flavodo 100.0 1.1E-29 2.3E-34 219.9 7.9 138 11-148 1-143 (143)
13 cd06207 CyPoR_like NADPH cytoc 100.0 1.5E-28 3.2E-33 246.1 17.0 151 234-395 2-153 (382)
14 cd06206 bifunctional_CYPOR The 100.0 1.7E-28 3.6E-33 245.9 17.3 149 233-394 1-149 (384)
15 PRK07308 flavodoxin; Validated 100.0 5E-28 1.1E-32 210.5 16.4 143 6-153 1-143 (146)
16 cd06202 Nitric_oxide_synthase 100.0 6.1E-28 1.3E-32 243.2 18.0 160 233-396 1-167 (406)
17 PRK06703 flavodoxin; Provision 99.9 4.5E-26 9.8E-31 199.3 16.3 147 6-157 1-148 (151)
18 PRK06756 flavodoxin; Provision 99.9 4.2E-24 9.2E-29 186.2 15.5 146 6-156 1-147 (148)
19 PRK09271 flavodoxin; Provision 99.9 1.4E-23 3E-28 185.4 15.8 140 7-156 1-147 (160)
20 TIGR01753 flav_short flavodoxi 99.9 4.1E-23 8.8E-28 177.6 13.9 138 9-152 1-139 (140)
21 PRK12359 flavodoxin FldB; Prov 99.9 2.1E-22 4.5E-27 178.9 16.9 144 7-157 1-169 (172)
22 cd06199 SiR Cytochrome p450- l 99.9 4.9E-23 1.1E-27 204.6 14.0 133 233-394 1-134 (360)
23 TIGR01754 flav_RNR ribonucleot 99.9 8.6E-23 1.9E-27 176.3 13.5 133 7-152 1-139 (140)
24 PRK06214 sulfite reductase; Pr 99.9 2.8E-22 6.2E-27 206.2 15.8 138 228-394 166-304 (530)
25 TIGR01752 flav_long flavodoxin 99.9 5.3E-22 1.1E-26 176.5 14.6 116 8-130 1-118 (167)
26 COG0716 FldA Flavodoxins [Ener 99.9 1.6E-21 3.4E-26 170.6 14.7 145 6-155 1-150 (151)
27 KOG1160 Fe-S oxidoreductase [E 99.9 5.2E-21 1.1E-25 185.0 14.7 143 8-159 48-195 (601)
28 PRK09267 flavodoxin FldA; Vali 99.8 2.2E-20 4.8E-25 166.3 15.0 117 6-129 1-119 (169)
29 PRK11921 metallo-beta-lactamas 99.7 5.4E-18 1.2E-22 170.6 12.0 142 5-156 246-393 (394)
30 PRK05568 flavodoxin; Provision 99.7 1.8E-17 3.9E-22 143.1 12.5 137 6-152 1-139 (142)
31 PRK05569 flavodoxin; Provision 99.7 2.3E-17 5E-22 142.3 12.8 115 6-129 1-117 (141)
32 TIGR00333 nrdI ribonucleoside- 99.7 1.1E-17 2.4E-22 140.3 10.1 92 11-121 1-93 (125)
33 PRK05452 anaerobic nitric oxid 99.7 4.1E-17 8.8E-22 167.6 12.3 142 5-157 250-397 (479)
34 PRK03600 nrdI ribonucleotide r 99.6 3.6E-15 7.8E-20 127.1 11.0 125 7-154 1-130 (134)
35 PRK02551 flavoprotein NrdI; Pr 99.6 1.3E-14 2.9E-19 125.8 10.0 114 6-130 1-130 (154)
36 PRK11104 hemG protoporphyrinog 99.6 2.8E-14 6.1E-19 128.0 12.3 87 7-101 1-87 (177)
37 PRK06242 flavodoxin; Provision 99.6 3E-14 6.5E-19 124.1 11.4 108 7-130 1-109 (150)
38 TIGR01755 flav_wrbA NAD(P)H:qu 99.5 2.8E-13 6.1E-18 123.6 12.6 121 7-129 1-142 (197)
39 PRK03767 NAD(P)H:quinone oxido 99.5 4.2E-13 9.1E-18 122.8 12.4 122 6-129 1-143 (200)
40 PRK07116 flavodoxin; Provision 99.3 1.2E-11 2.6E-16 109.2 11.9 127 6-152 2-158 (160)
41 COG0426 FpaA Uncharacterized f 99.3 1.7E-11 3.7E-16 120.3 10.9 117 7-133 247-367 (388)
42 PF12724 Flavodoxin_5: Flavodo 99.3 7.4E-11 1.6E-15 102.1 13.6 86 10-103 1-86 (143)
43 PF12641 Flavodoxin_3: Flavodo 99.2 5.9E-11 1.3E-15 104.3 10.7 96 10-121 1-98 (160)
44 COG4635 HemG Flavodoxin [Energ 99.2 1.2E-10 2.5E-15 99.6 10.1 110 7-124 1-113 (175)
45 PF07972 Flavodoxin_NdrI: NrdI 99.2 6.3E-11 1.4E-15 98.9 8.2 95 11-119 1-100 (122)
46 COG1780 NrdI Protein involved 99.1 3.9E-10 8.4E-15 94.1 10.8 128 7-156 1-133 (141)
47 PF03358 FMN_red: NADPH-depend 98.9 2.5E-09 5.4E-14 93.1 8.3 119 7-129 1-142 (152)
48 PF12682 Flavodoxin_4: Flavodo 98.8 1.5E-08 3.2E-13 89.0 8.4 123 8-152 1-156 (156)
49 PRK10569 NAD(P)H-dependent FMN 98.7 3.7E-07 7.9E-12 82.9 13.1 116 7-129 1-135 (191)
50 PRK06934 flavodoxin; Provision 98.7 1.5E-07 3.2E-12 86.8 10.2 133 4-152 33-217 (221)
51 TIGR03567 FMN_reduc_SsuE FMN r 98.6 1.2E-06 2.6E-11 78.1 14.1 116 8-130 1-135 (171)
52 PRK00170 azoreductase; Reviewe 98.5 4.1E-06 8.9E-11 76.3 13.8 147 6-156 1-195 (201)
53 PRK01355 azoreductase; Reviewe 98.3 2.1E-05 4.6E-10 71.8 14.3 152 6-158 1-194 (199)
54 PRK09739 hypothetical protein; 98.3 1.3E-05 2.9E-10 73.1 13.0 149 6-156 3-194 (199)
55 TIGR03566 FMN_reduc_MsuE FMN r 98.3 1.6E-05 3.5E-10 71.0 13.0 115 8-129 1-137 (174)
56 PF02525 Flavodoxin_2: Flavodo 98.2 1.2E-05 2.5E-10 73.4 11.7 148 7-156 1-199 (199)
57 COG0655 WrbA Multimeric flavod 98.2 1.3E-05 2.7E-10 73.8 11.2 117 8-127 5-148 (207)
58 PRK13556 azoreductase; Provisi 98.0 0.00014 3E-09 66.9 14.4 147 6-156 1-201 (208)
59 TIGR02690 resist_ArsH arsenica 97.7 0.00046 9.9E-09 63.8 12.0 120 6-128 26-162 (219)
60 PRK04930 glutathione-regulated 97.4 0.0081 1.8E-07 54.1 15.5 151 5-159 4-178 (184)
61 PRK13555 azoreductase; Provisi 97.3 0.0099 2.2E-07 54.7 14.4 121 6-127 1-175 (208)
62 KOG3135 1,4-benzoquinone reduc 97.1 0.0036 7.9E-08 54.4 9.4 127 6-135 1-148 (203)
63 COG0431 Predicted flavoprotein 96.6 0.024 5.2E-07 51.1 10.7 116 7-129 1-136 (184)
64 PRK00871 glutathione-regulated 96.0 0.16 3.4E-06 45.5 12.7 121 9-131 2-144 (176)
65 cd06201 SiR_like2 Cytochrome p 95.3 0.077 1.7E-06 51.3 8.3 42 233-275 49-96 (289)
66 COG2249 MdaB Putative NADPH-qu 95.1 0.27 5.7E-06 44.6 10.7 150 7-159 1-187 (189)
67 KOG0560 Sulfite reductase (fer 94.1 0.026 5.6E-07 56.9 1.9 63 97-159 1-69 (638)
68 cd06182 CYPOR_like NADPH cytoc 92.3 0.17 3.8E-06 48.3 4.4 42 234-275 2-44 (267)
69 PLN03115 ferredoxin--NADP(+) r 90.4 0.45 9.7E-06 47.6 5.3 47 227-274 87-134 (367)
70 cd07371 2A5CPDO_AB The alpha a 86.5 3.6 7.7E-05 39.3 8.4 81 20-105 86-176 (268)
71 cd05566 PTS_IIB_galactitol PTS 85.7 2.7 5.9E-05 32.6 6.1 56 7-63 1-58 (89)
72 PRK02261 methylaspartate mutas 85.7 12 0.00026 31.9 10.4 110 7-132 2-121 (137)
73 TIGR03224 benzo_boxA benzoyl-C 85.2 1.8 3.8E-05 44.1 5.9 49 226-274 138-187 (411)
74 COG1810 Uncharacterized protei 83.7 23 0.0005 32.7 11.7 119 6-156 1-133 (224)
75 cd07363 45_DOPA_Dioxygenase Th 82.7 5.6 0.00012 37.6 7.9 78 20-105 79-163 (253)
76 PF06283 ThuA: Trehalose utili 81.2 4.2 9.2E-05 37.2 6.4 73 8-81 1-79 (217)
77 cd03142 GATase1_ThuA Type 1 gl 80.8 8.3 0.00018 35.6 8.0 76 23-109 24-104 (215)
78 COG0429 Predicted hydrolase of 77.8 18 0.00038 35.7 9.5 80 7-100 76-155 (345)
79 cd05567 PTS_IIB_mannitol PTS_I 77.0 8 0.00017 30.0 5.8 36 7-42 1-36 (87)
80 cd00578 L-fuc_L-ara-isomerases 76.6 12 0.00026 38.5 8.6 130 8-157 2-159 (452)
81 cd07373 2A5CPDO_A The alpha su 76.2 12 0.00027 35.7 8.0 80 20-105 89-179 (271)
82 PF08357 SEFIR: SEFIR domain; 75.7 7.1 0.00015 33.4 5.7 33 7-39 1-34 (150)
83 PRK05928 hemD uroporphyrinogen 74.2 12 0.00025 34.6 7.2 92 7-127 2-103 (249)
84 PRK14192 bifunctional 5,10-met 73.9 80 0.0017 30.4 12.9 111 6-126 33-186 (283)
85 cd05563 PTS_IIB_ascorbate PTS_ 73.6 9.3 0.0002 29.3 5.4 45 8-55 1-47 (86)
86 PRK05752 uroporphyrinogen-III 73.2 18 0.00039 34.0 8.3 85 21-129 12-107 (255)
87 PRK14194 bifunctional 5,10-met 72.8 61 0.0013 31.6 11.8 112 6-127 33-187 (301)
88 cd07372 2A5CPDO_B The beta sub 71.5 23 0.0005 34.3 8.7 83 19-105 96-193 (294)
89 PRK10310 PTS system galactitol 71.4 7.8 0.00017 30.7 4.5 36 8-43 4-39 (94)
90 PLN03116 ferredoxin--NADP+ red 71.1 8.5 0.00019 37.4 5.7 44 230-274 24-68 (307)
91 PF09651 Cas_APE2256: CRISPR-a 71.0 5.4 0.00012 34.0 3.7 37 9-45 24-60 (136)
92 PF09314 DUF1972: Domain of un 70.0 84 0.0018 28.3 13.9 116 6-129 1-124 (185)
93 cd06208 CYPOR_like_FNR These f 68.7 11 0.00024 36.2 5.8 41 233-274 12-52 (286)
94 cd07367 CarBb CarBb is the B s 67.7 38 0.00083 32.3 9.2 85 20-105 89-183 (268)
95 COG1587 HemD Uroporphyrinogen- 66.3 28 0.00061 32.6 7.9 87 22-131 11-105 (248)
96 PRK09590 celB cellobiose phosp 65.4 8.6 0.00019 31.2 3.7 37 6-43 1-37 (104)
97 PF02826 2-Hacid_dh_C: D-isome 65.1 15 0.00033 32.5 5.6 35 86-128 30-64 (178)
98 PRK14189 bifunctional 5,10-met 64.1 1.4E+02 0.0031 28.8 12.6 113 6-128 32-187 (285)
99 cd02072 Glm_B12_BD B12 binding 63.9 47 0.001 28.0 7.9 110 11-132 2-117 (128)
100 PRK14178 bifunctional 5,10-met 63.5 1.1E+02 0.0025 29.4 11.5 112 6-127 26-180 (279)
101 cd00133 PTS_IIB PTS_IIB: subun 63.1 16 0.00035 27.0 4.7 31 8-38 1-31 (84)
102 TIGR00853 pts-lac PTS system, 62.7 11 0.00025 29.9 3.8 55 6-62 3-58 (95)
103 cd07362 HPCD_like Class III ex 62.5 63 0.0014 30.9 9.6 81 20-105 91-181 (272)
104 TIGR02667 moaB_proteo molybden 62.5 5.9 0.00013 34.8 2.4 46 90-135 2-47 (163)
105 TIGR02298 HpaD_Fe 3,4-dihydrox 62.0 42 0.00091 32.3 8.4 81 20-105 95-185 (282)
106 TIGR01501 MthylAspMutase methy 61.9 49 0.0011 28.1 7.8 111 10-132 3-119 (134)
107 PRK15438 erythronate-4-phospha 61.7 18 0.00038 36.5 5.9 33 88-128 112-144 (378)
108 COG3414 SgaB Phosphotransferas 61.6 29 0.00064 27.5 6.0 56 6-64 1-58 (93)
109 PF02302 PTS_IIB: PTS system, 61.1 9.9 0.00022 29.3 3.2 56 8-64 1-57 (90)
110 cd06200 SiR_like1 Cytochrome p 60.8 16 0.00036 34.1 5.3 42 234-275 3-44 (245)
111 PLN02516 methylenetetrahydrofo 60.7 1.5E+02 0.0032 28.9 11.8 112 6-127 39-195 (299)
112 COG0514 RecQ Superfamily II DN 60.2 27 0.00058 37.2 7.0 93 8-106 231-342 (590)
113 cd05568 PTS_IIB_bgl_like PTS_I 59.7 6.2 0.00013 30.0 1.8 52 7-59 1-52 (85)
114 PRK14188 bifunctional 5,10-met 59.5 1.8E+02 0.0038 28.3 12.4 112 6-127 32-186 (296)
115 PF13380 CoA_binding_2: CoA bi 59.3 30 0.00064 28.5 5.9 98 9-131 3-110 (116)
116 PRK01231 ppnK inorganic polyph 57.5 83 0.0018 30.5 9.6 37 6-42 4-40 (295)
117 PRK10792 bifunctional 5,10-met 57.2 1.9E+02 0.0041 28.0 11.9 111 7-127 34-187 (285)
118 PRK00257 erythronate-4-phospha 56.4 19 0.00042 36.2 5.2 33 88-128 112-144 (381)
119 PRK14177 bifunctional 5,10-met 56.4 1.7E+02 0.0037 28.2 11.3 111 7-127 34-187 (284)
120 TIGR00322 diphth2_R diphthamid 55.9 21 0.00045 35.3 5.2 57 6-62 232-293 (332)
121 PRK14191 bifunctional 5,10-met 55.6 2E+02 0.0044 27.8 12.4 112 6-127 31-185 (285)
122 PRK06490 glutamine amidotransf 55.4 88 0.0019 29.2 9.1 73 5-81 6-80 (239)
123 cd02067 B12-binding B12 bindin 55.0 91 0.002 25.2 8.3 103 11-131 2-110 (119)
124 cd02071 MM_CoA_mut_B12_BD meth 54.8 1.1E+02 0.0023 25.2 8.6 104 11-132 2-111 (122)
125 PRK13609 diacylglycerol glucos 54.5 22 0.00048 35.2 5.2 41 4-44 2-43 (380)
126 PF02900 LigB: Catalytic LigB 54.4 47 0.001 31.4 7.3 99 19-121 94-210 (272)
127 PRK10427 putative PTS system f 54.3 29 0.00062 28.7 5.0 56 7-62 3-66 (114)
128 cd01075 NAD_bind_Leu_Phe_Val_D 54.0 39 0.00084 30.6 6.3 32 88-127 24-55 (200)
129 cd07370 HPCD The Class III ext 54.0 1.1E+02 0.0023 29.3 9.7 80 20-105 93-182 (280)
130 KOG4530 Predicted flavoprotein 53.6 1.6E+02 0.0034 26.0 10.8 42 52-100 85-126 (199)
131 KOG1160 Fe-S oxidoreductase [E 53.2 8.5 0.00018 39.1 1.9 121 9-129 360-487 (601)
132 PRK09622 porA pyruvate flavodo 53.1 1.2E+02 0.0027 30.7 10.4 90 7-105 269-368 (407)
133 cd05564 PTS_IIB_chitobiose_lic 52.8 20 0.00043 28.5 3.7 55 8-64 1-56 (96)
134 PRK13364 protocatechuate 4,5-d 52.5 85 0.0018 30.2 8.6 84 20-105 97-192 (278)
135 COG0493 GltD NADPH-dependent g 52.0 80 0.0017 32.7 8.9 102 22-131 174-293 (457)
136 COG2185 Sbm Methylmalonyl-CoA 51.6 69 0.0015 27.6 7.0 107 6-131 12-123 (143)
137 cd07952 ED_3B_like Uncharacter 51.6 83 0.0018 29.7 8.4 81 19-105 78-172 (256)
138 PF00970 FAD_binding_6: Oxidor 51.2 35 0.00075 26.6 4.9 37 233-274 3-41 (99)
139 cd07364 PCA_45_Dioxygenase_B S 51.0 1E+02 0.0022 29.6 8.9 84 20-105 97-193 (277)
140 PRK08250 glutamine amidotransf 50.0 1.2E+02 0.0027 28.1 9.2 55 7-65 1-57 (235)
141 PRK14190 bifunctional 5,10-met 49.9 2.5E+02 0.0054 27.1 12.8 112 6-127 32-186 (284)
142 PF13439 Glyco_transf_4: Glyco 49.9 18 0.0004 30.4 3.4 37 9-45 3-39 (177)
143 PRK14182 bifunctional 5,10-met 49.8 2.5E+02 0.0054 27.1 11.5 112 6-127 30-185 (282)
144 PLN02928 oxidoreductase family 49.8 47 0.001 33.0 6.6 32 89-128 156-187 (347)
145 PF11074 DUF2779: Domain of un 49.7 20 0.00043 30.3 3.4 61 326-388 47-117 (130)
146 PRK01372 ddl D-alanine--D-alan 49.5 39 0.00085 32.4 6.0 55 7-61 5-64 (304)
147 PRK14186 bifunctional 5,10-met 49.5 2.6E+02 0.0056 27.2 11.8 112 6-127 32-186 (297)
148 PRK14166 bifunctional 5,10-met 49.0 2.6E+02 0.0055 27.0 11.6 112 6-127 30-185 (282)
149 PF04908 SH3BGR: SH3-binding, 49.0 45 0.00098 26.8 5.2 39 7-45 1-41 (99)
150 cd06578 HemD Uroporphyrinogen- 48.7 76 0.0017 28.6 7.6 83 24-129 10-102 (239)
151 TIGR00640 acid_CoA_mut_C methy 48.0 69 0.0015 27.1 6.5 107 8-132 2-114 (132)
152 PRK08367 porA pyruvate ferredo 47.7 2.7E+02 0.0059 28.2 11.8 92 6-105 262-360 (394)
153 PF01866 Diphthamide_syn: Puta 47.2 36 0.00077 33.2 5.2 55 6-60 209-267 (307)
154 TIGR03682 arCOG04112 arCOG0411 46.9 31 0.00067 33.7 4.8 57 6-62 212-272 (308)
155 PF00670 AdoHcyase_NAD: S-aden 46.6 38 0.00082 29.8 4.8 45 74-128 7-51 (162)
156 PF03345 DDOST_48kD: Oligosacc 46.4 1.5E+02 0.0034 30.3 9.8 102 9-130 1-107 (423)
157 PRK06975 bifunctional uroporph 46.1 64 0.0014 35.0 7.4 78 23-126 14-102 (656)
158 TIGR00412 redox_disulf_2 small 45.8 55 0.0012 24.4 5.1 37 10-46 3-39 (76)
159 PRK07168 bifunctional uroporph 45.7 71 0.0015 33.2 7.4 84 21-126 260-351 (474)
160 PRK14175 bifunctional 5,10-met 45.2 2.9E+02 0.0064 26.7 13.9 112 6-127 32-186 (286)
161 cd07949 PCA_45_Doxase_B_like_1 45.1 1.3E+02 0.0029 28.7 8.8 83 20-105 97-192 (276)
162 cd03805 GT1_ALG2_like This fam 44.6 29 0.00062 34.1 4.3 38 7-44 1-39 (392)
163 cd07368 PhnC_Bs_like PhnC is a 44.1 1.1E+02 0.0024 29.3 8.0 83 20-105 94-192 (277)
164 PRK07452 DNA polymerase III su 44.1 2.1E+02 0.0045 27.7 10.2 132 7-156 1-146 (326)
165 PRK08811 uroporphyrinogen-III 44.0 1.2E+02 0.0026 28.8 8.3 82 20-127 26-117 (266)
166 COG0296 GlgB 1,4-alpha-glucan 43.8 74 0.0016 34.2 7.3 70 13-83 152-226 (628)
167 PRK09212 pyruvate dehydrogenas 43.5 45 0.00098 32.8 5.4 67 9-82 205-278 (327)
168 PF00919 UPF0004: Uncharacteri 43.4 1.2E+02 0.0026 24.1 6.9 67 24-105 16-82 (98)
169 PRK11538 ribosome-associated p 43.0 1.8E+02 0.0039 23.6 7.9 41 20-64 3-44 (105)
170 COG1587 HemD Uroporphyrinogen- 43.0 1.3E+02 0.0027 28.1 8.2 81 25-128 136-227 (248)
171 cd03030 GRX_SH3BGR Glutaredoxi 42.9 71 0.0015 25.2 5.4 37 9-45 2-40 (92)
172 cd05569 PTS_IIB_fructose PTS_I 42.8 40 0.00087 26.7 4.0 53 11-63 3-63 (96)
173 PF01488 Shikimate_DH: Shikima 42.8 43 0.00094 28.1 4.5 32 89-128 9-40 (135)
174 cd05014 SIS_Kpsf KpsF-like pro 42.7 1.8E+02 0.0039 23.5 9.2 66 11-82 4-72 (128)
175 PRK07239 bifunctional uroporph 42.6 79 0.0017 31.6 7.1 80 6-100 11-106 (381)
176 PRK13886 conjugal transfer pro 42.6 2.9E+02 0.0064 25.9 11.1 111 6-129 1-119 (241)
177 PF13433 Peripla_BP_5: Peripla 42.6 1.7E+02 0.0037 29.3 9.2 53 69-131 117-170 (363)
178 cd01452 VWA_26S_proteasome_sub 42.5 55 0.0012 29.5 5.3 40 6-45 107-146 (187)
179 cd07365 MhpB_like Subunit B of 41.8 2.3E+02 0.005 27.6 10.0 82 20-105 87-179 (310)
180 PF04295 GD_AH_C: D-galactarat 41.3 2E+02 0.0043 29.2 9.5 124 9-156 20-144 (396)
181 cd05565 PTS_IIB_lactose PTS_II 41.1 46 0.00099 26.7 4.1 76 9-99 3-79 (99)
182 PRK13608 diacylglycerol glucos 41.1 41 0.00088 33.7 4.8 39 5-43 4-45 (391)
183 KOG2536 MAM33, mitochondrial m 41.0 32 0.0007 32.5 3.6 42 318-361 215-256 (263)
184 PRK08410 2-hydroxyacid dehydro 41.0 38 0.00082 33.0 4.4 32 89-128 142-173 (311)
185 PF07583 PSCyt2: Protein of un 40.9 1.3E+02 0.0028 27.6 7.6 63 316-385 20-84 (208)
186 PRK09189 uroporphyrinogen-III 40.7 1.2E+02 0.0026 28.0 7.6 80 24-128 12-98 (240)
187 PF12076 Wax2_C: WAX2 C-termin 40.5 13 0.00028 32.5 0.9 31 16-46 3-33 (164)
188 PRK14569 D-alanyl-alanine synt 40.3 70 0.0015 30.8 6.1 39 6-44 3-44 (296)
189 PRK06932 glycerate dehydrogena 40.3 37 0.00081 33.2 4.2 32 89-128 144-175 (314)
190 cd05211 NAD_bind_Glu_Leu_Phe_V 40.1 46 0.00099 30.7 4.5 32 89-128 20-51 (217)
191 cd04962 GT1_like_5 This family 39.4 39 0.00086 32.7 4.3 38 7-44 1-38 (371)
192 PRK14176 bifunctional 5,10-met 39.4 3.6E+02 0.0079 26.1 11.8 112 6-127 38-192 (287)
193 PRK06487 glycerate dehydrogena 39.3 39 0.00086 33.0 4.2 32 89-128 145-176 (317)
194 PRK14183 bifunctional 5,10-met 39.1 3.6E+02 0.0079 26.0 11.6 112 6-127 31-185 (281)
195 PF02780 Transketolase_C: Tran 39.0 22 0.00047 29.4 2.0 37 8-48 12-48 (124)
196 PRK13143 hisH imidazole glycer 38.7 45 0.00097 30.1 4.2 43 8-60 2-45 (200)
197 COG4071 Uncharacterized protei 38.3 92 0.002 28.7 5.9 115 260-387 126-252 (278)
198 PRK05788 cobalamin biosynthesi 38.0 15 0.00033 36.0 1.0 56 6-63 3-61 (315)
199 PRK05907 hypothetical protein; 37.8 3.9E+02 0.0085 26.0 11.7 124 7-157 18-151 (311)
200 COG1052 LdhA Lactate dehydroge 37.8 45 0.00097 32.8 4.3 32 89-128 143-174 (324)
201 COG0104 PurA Adenylosuccinate 37.7 32 0.0007 34.7 3.3 29 67-102 389-417 (430)
202 cd06578 HemD Uroporphyrinogen- 37.5 73 0.0016 28.7 5.6 42 72-128 184-225 (239)
203 cd05005 SIS_PHI Hexulose-6-pho 37.2 2.8E+02 0.0061 24.2 11.0 66 9-82 35-100 (179)
204 PRK13366 protocatechuate 4,5-d 37.0 1.9E+02 0.0041 27.9 8.4 83 21-105 98-193 (284)
205 TIGR02619 putative CRISPR-asso 37.0 54 0.0012 28.4 4.2 32 7-38 34-65 (149)
206 cd00758 MoCF_BD MoCF_BD: molyb 36.7 21 0.00046 30.0 1.6 42 94-135 1-44 (133)
207 COG0111 SerA Phosphoglycerate 36.0 48 0.001 32.6 4.2 33 88-128 138-170 (324)
208 PRK14172 bifunctional 5,10-met 35.9 4.1E+02 0.0088 25.6 11.6 111 7-127 33-186 (278)
209 PRK13527 glutamine amidotransf 35.8 74 0.0016 28.6 5.2 50 8-61 2-51 (200)
210 smart00460 TGc Transglutaminas 35.7 38 0.00081 24.2 2.7 30 13-42 2-31 (68)
211 PF13192 Thioredoxin_3: Thiore 35.7 67 0.0015 23.9 4.1 39 7-46 1-39 (76)
212 PF14258 DUF4350: Domain of un 35.6 1.3E+02 0.0028 21.9 5.6 54 25-82 8-62 (70)
213 cd07320 Extradiol_Dioxygenase_ 35.6 2.3E+02 0.0051 26.3 8.8 80 20-105 82-171 (260)
214 TIGR00272 DPH2 diphthamide bio 35.5 53 0.0012 34.3 4.6 57 6-62 281-342 (496)
215 cd05009 SIS_GlmS_GlmD_2 SIS (S 35.2 1.4E+02 0.003 24.9 6.6 66 11-82 19-87 (153)
216 PRK02645 ppnK inorganic polyph 34.9 1.1E+02 0.0025 29.7 6.6 38 5-42 2-39 (305)
217 cd05008 SIS_GlmS_GlmD_1 SIS (S 34.9 2.4E+02 0.0052 22.7 9.7 66 11-82 3-71 (126)
218 COG2072 TrkA Predicted flavopr 34.8 51 0.0011 33.9 4.4 65 54-126 133-201 (443)
219 cd03825 GT1_wcfI_like This fam 34.3 65 0.0014 30.8 4.9 40 7-46 1-41 (365)
220 cd04951 GT1_WbdM_like This fam 34.1 1.1E+02 0.0023 29.2 6.4 37 9-45 2-39 (360)
221 PTZ00445 p36-lilke protein; Pr 33.8 2.5E+02 0.0053 26.0 8.1 96 17-126 24-131 (219)
222 PRK14187 bifunctional 5,10-met 33.7 4.5E+02 0.0099 25.5 13.0 112 6-127 32-188 (294)
223 cd06196 FNR_like_1 Ferredoxin 33.5 57 0.0012 29.4 4.1 38 233-276 4-41 (218)
224 cd07369 PydA_Rs_like PydA is a 33.3 2.7E+02 0.0058 27.5 8.9 99 20-122 99-211 (329)
225 cd03808 GT1_cap1E_like This fa 33.0 2.5E+02 0.0055 26.0 8.7 39 8-47 1-39 (359)
226 PRK13055 putative lipid kinase 32.9 2.8E+02 0.0061 27.1 9.2 86 6-104 2-97 (334)
227 PRK13243 glyoxylate reductase; 32.9 60 0.0013 32.0 4.4 31 89-127 147-177 (333)
228 cd06388 PBP1_iGluR_AMPA_GluR4 32.8 1.7E+02 0.0037 29.1 7.7 70 6-84 124-202 (371)
229 PRK07053 glutamine amidotransf 32.6 2.8E+02 0.006 25.8 8.6 72 6-82 2-78 (234)
230 TIGR00177 molyb_syn molybdenum 32.6 27 0.00059 29.8 1.7 43 94-136 2-53 (144)
231 PF02080 TrkA_C: TrkA-C domain 32.5 57 0.0012 23.6 3.2 30 257-288 42-71 (71)
232 PRK13059 putative lipid kinase 32.4 3.7E+02 0.008 25.7 9.7 85 6-103 1-93 (295)
233 PRK11404 putative PTS system 32.4 79 0.0017 33.0 5.3 58 5-62 2-67 (482)
234 COG1736 DPH2 Diphthamide synth 32.2 80 0.0017 31.4 5.0 71 6-80 237-312 (347)
235 PRK13358 protocatechuate 4,5-d 32.1 2.7E+02 0.0059 26.3 8.6 84 21-105 90-183 (269)
236 PRK11790 D-3-phosphoglycerate 32.0 62 0.0013 32.9 4.4 33 88-128 147-179 (409)
237 PRK06436 glycerate dehydrogena 31.9 65 0.0014 31.3 4.4 32 88-127 118-149 (303)
238 PF00781 DAGK_cat: Diacylglyce 31.9 1.9E+02 0.0042 23.7 6.8 87 8-104 1-94 (130)
239 TIGR00441 gmhA phosphoheptose 31.9 1.6E+02 0.0035 25.2 6.5 55 7-64 79-133 (154)
240 cd03820 GT1_amsD_like This fam 31.7 78 0.0017 29.4 4.9 40 8-47 1-42 (348)
241 cd04955 GT1_like_6 This family 31.6 2.1E+02 0.0046 27.2 8.0 33 14-46 11-43 (363)
242 PRK08366 vorA 2-ketoisovalerat 31.4 5.6E+02 0.012 25.9 11.2 92 6-105 260-358 (390)
243 PRK03708 ppnK inorganic polyph 31.3 1.5E+02 0.0032 28.4 6.7 35 7-41 1-35 (277)
244 PRK14179 bifunctional 5,10-met 30.8 5E+02 0.011 25.1 12.6 113 6-128 32-187 (284)
245 PRK14168 bifunctional 5,10-met 30.7 5.1E+02 0.011 25.2 11.3 111 6-126 33-192 (297)
246 PF02602 HEM4: Uroporphyrinoge 30.6 14 0.0003 33.8 -0.6 81 26-127 2-95 (231)
247 cd08507 PBP2_SgrR_like The C-t 30.5 1.4E+02 0.003 30.4 6.8 38 7-45 298-335 (448)
248 cd05014 SIS_Kpsf KpsF-like pro 30.4 1.2E+02 0.0026 24.6 5.3 53 9-64 49-101 (128)
249 PF04056 Ssl1: Ssl1-like; Int 30.4 73 0.0016 28.9 4.1 44 1-44 96-139 (193)
250 cd07366 3MGA_Dioxygenase Subun 30.3 4E+02 0.0086 26.3 9.6 96 20-120 150-260 (328)
251 cd05013 SIS_RpiR RpiR-like pro 30.0 2.2E+02 0.0049 22.9 6.9 69 8-82 14-85 (139)
252 cd06191 FNR_iron_sulfur_bindin 30.0 47 0.001 30.3 2.9 40 233-277 2-42 (231)
253 PRK13363 protocatechuate 4,5-d 30.0 4.2E+02 0.0092 26.2 9.7 84 20-105 154-252 (335)
254 cd06217 FNR_iron_sulfur_bindin 29.9 77 0.0017 28.8 4.4 37 233-274 5-42 (235)
255 cd06212 monooxygenase_like The 29.9 97 0.0021 28.2 5.0 38 233-275 4-42 (232)
256 PF11132 SplA: Transcriptional 29.9 37 0.00079 25.6 1.7 17 261-277 4-20 (75)
257 PRK15409 bifunctional glyoxyla 29.8 75 0.0016 31.2 4.4 32 89-128 142-174 (323)
258 PRK15469 ghrA bifunctional gly 29.6 77 0.0017 30.9 4.5 32 88-127 132-163 (312)
259 PRK13403 ketol-acid reductoiso 29.5 71 0.0015 31.5 4.1 33 88-128 12-44 (335)
260 PRK14171 bifunctional 5,10-met 29.2 5.3E+02 0.012 24.9 11.6 112 6-127 32-187 (288)
261 PRK14180 bifunctional 5,10-met 29.0 5.3E+02 0.012 24.9 12.7 112 6-127 31-186 (282)
262 TIGR00725 conserved hypothetic 28.8 1.2E+02 0.0025 26.5 5.0 35 93-128 2-36 (159)
263 PRK06895 putative anthranilate 28.8 1.9E+02 0.0042 25.6 6.7 64 7-81 2-67 (190)
264 KOG0025 Zn2+-binding dehydroge 28.8 34 0.00073 33.2 1.7 59 263-332 99-160 (354)
265 cd06213 oxygenase_e_transfer_s 28.7 1.1E+02 0.0025 27.7 5.3 37 233-275 4-40 (227)
266 PRK05282 (alpha)-aspartyl dipe 28.6 88 0.0019 29.2 4.5 54 6-59 31-85 (233)
267 TIGR01470 cysG_Nterm siroheme 28.6 4E+02 0.0088 24.1 8.8 89 10-121 71-164 (205)
268 PRK07574 formate dehydrogenase 28.5 76 0.0016 32.0 4.3 32 89-128 189-220 (385)
269 COG1609 PurR Transcriptional r 28.5 5.6E+02 0.012 24.9 12.2 108 5-129 57-180 (333)
270 PLN03139 formate dehydrogenase 28.3 83 0.0018 31.8 4.5 32 89-128 196-227 (386)
271 cd00886 MogA_MoaB MogA_MoaB fa 28.3 47 0.001 28.6 2.4 44 93-136 1-46 (152)
272 cd06183 cyt_b5_reduct_like Cyt 28.2 96 0.0021 28.1 4.7 39 233-276 2-42 (234)
273 cd07359 PCA_45_Doxase_B_like S 27.8 3.4E+02 0.0075 25.5 8.6 84 20-105 93-186 (271)
274 PRK12480 D-lactate dehydrogena 27.8 83 0.0018 31.0 4.4 31 89-127 143-173 (330)
275 PF13728 TraF: F plasmid trans 27.7 1.5E+02 0.0032 27.2 5.8 46 7-52 122-167 (215)
276 cd06214 PA_degradation_oxidore 27.7 65 0.0014 29.5 3.4 37 233-274 5-44 (241)
277 TIGR00829 FRU PTS system, fruc 27.5 67 0.0014 24.9 2.9 49 14-62 5-61 (85)
278 TIGR02128 G6PI_arch bifunction 27.5 4.4E+02 0.0095 25.6 9.3 54 9-66 23-78 (308)
279 COG2454 Uncharacterized conser 27.3 1.1E+02 0.0024 27.9 4.6 44 5-48 127-170 (211)
280 PF02875 Mur_ligase_C: Mur lig 27.3 1.1E+02 0.0023 23.5 4.1 31 67-102 21-52 (91)
281 TIGR02867 spore_II_P stage II 27.3 2E+02 0.0043 26.2 6.4 94 16-122 28-139 (196)
282 PRK13337 putative lipid kinase 27.2 4.5E+02 0.0097 25.2 9.4 85 6-103 1-94 (304)
283 TIGR00936 ahcY adenosylhomocys 26.9 2.4E+02 0.0051 28.8 7.5 69 36-128 155-223 (406)
284 COG0518 GuaA GMP synthase - Gl 26.9 2.1E+02 0.0045 26.0 6.5 67 7-83 2-75 (198)
285 cd06334 PBP1_ABC_ligand_bindin 26.8 4E+02 0.0086 26.0 9.1 52 72-128 122-173 (351)
286 PTZ00075 Adenosylhomocysteinas 26.8 75 0.0016 33.0 3.9 33 88-128 250-282 (476)
287 cd01076 NAD_bind_1_Glu_DH NAD( 26.5 1E+02 0.0022 28.6 4.5 32 88-127 27-58 (227)
288 cd06184 flavohem_like_fad_nad_ 26.5 1.2E+02 0.0026 28.0 5.0 39 233-276 10-50 (247)
289 PRK10217 dTDP-glucose 4,6-dehy 26.3 5.5E+02 0.012 24.8 10.0 53 60-121 187-242 (355)
290 PRK12814 putative NADPH-depend 25.7 1.5E+02 0.0031 32.2 6.1 97 20-127 242-350 (652)
291 cd06218 DHOD_e_trans FAD/NAD b 25.6 83 0.0018 29.2 3.8 36 235-275 2-37 (246)
292 cd01741 GATase1_1 Subgroup of 25.6 4.2E+02 0.009 23.2 8.2 51 9-63 2-56 (188)
293 PRK05928 hemD uroporphyrinogen 25.4 1.6E+02 0.0034 26.8 5.6 42 72-127 188-229 (249)
294 PRK12749 quinate/shikimate deh 25.4 1.7E+02 0.0038 28.1 6.0 50 67-128 103-152 (288)
295 cd05191 NAD_bind_amino_acid_DH 25.4 1.4E+02 0.003 22.7 4.5 31 89-127 20-50 (86)
296 cd03802 GT1_AviGT4_like This f 25.4 1.1E+02 0.0024 28.8 4.8 31 16-46 17-47 (335)
297 PRK02812 ribose-phosphate pyro 25.3 6.6E+02 0.014 24.7 10.7 110 6-128 19-143 (330)
298 cd06190 T4MO_e_transfer_like T 25.0 99 0.0021 28.1 4.2 28 248-276 10-37 (232)
299 cd06215 FNR_iron_sulfur_bindin 24.9 1.2E+02 0.0025 27.6 4.6 37 233-274 2-39 (231)
300 TIGR01133 murG undecaprenyldip 24.9 85 0.0018 30.2 3.9 36 7-43 1-36 (348)
301 PLN02683 pyruvate dehydrogenas 24.8 3.1E+02 0.0068 27.3 7.9 84 10-103 233-323 (356)
302 cd03811 GT1_WabH_like This fam 24.8 3.1E+02 0.0068 25.2 7.7 38 9-46 2-40 (353)
303 PTZ00182 3-methyl-2-oxobutanat 24.6 1.8E+02 0.0039 28.9 6.1 56 9-68 237-299 (355)
304 PRK12775 putative trifunctiona 24.6 2E+02 0.0043 33.0 7.1 43 319-363 860-902 (1006)
305 PRK09548 PTS system ascorbate- 24.5 1.6E+02 0.0034 31.6 5.9 37 5-41 505-541 (602)
306 cd01133 F1-ATPase_beta F1 ATP 24.3 6.4E+02 0.014 24.2 11.6 96 5-128 68-167 (274)
307 KOG0068 D-3-phosphoglycerate d 24.3 1.4E+02 0.0031 29.7 5.0 75 42-128 80-174 (406)
308 cd05710 SIS_1 A subgroup of th 24.3 1.7E+02 0.0038 23.8 5.1 45 6-53 46-90 (120)
309 PLN02494 adenosylhomocysteinas 24.2 1.5E+02 0.0032 30.9 5.4 43 76-128 240-282 (477)
310 cd02038 FleN-like FleN is a me 24.2 2.5E+02 0.0055 23.4 6.3 51 11-63 2-54 (139)
311 cd06355 PBP1_FmdD_like Peripla 24.2 6.5E+02 0.014 24.3 10.2 47 73-128 120-166 (348)
312 COG0540 PyrB Aspartate carbamo 24.2 1.5E+02 0.0033 28.9 5.2 61 59-127 128-188 (316)
313 cd08332 CARD_CASP2 Caspase act 24.0 2.8E+02 0.006 21.7 5.9 67 317-385 19-89 (90)
314 COG0190 FolD 5,10-methylene-te 24.0 6.6E+02 0.014 24.2 10.0 112 6-127 30-184 (283)
315 PF13579 Glyco_trans_4_4: Glyc 23.9 89 0.0019 25.5 3.4 50 18-67 1-51 (160)
316 PRK01175 phosphoribosylformylg 23.8 2.6E+02 0.0057 26.5 6.8 56 6-65 3-61 (261)
317 cd06195 FNR1 Ferredoxin-NADP+ 23.8 99 0.0021 28.4 3.9 51 234-290 2-53 (241)
318 cd03821 GT1_Bme6_like This fam 23.7 92 0.002 29.3 3.8 39 8-46 1-42 (375)
319 PRK12549 shikimate 5-dehydroge 23.7 1.8E+02 0.004 27.8 5.8 45 72-127 110-154 (284)
320 TIGR02853 spore_dpaA dipicolin 23.6 1.1E+02 0.0025 29.4 4.4 31 89-127 148-178 (287)
321 TIGR03127 RuMP_HxlB 6-phospho 23.5 4.9E+02 0.011 22.5 10.0 80 10-104 33-112 (179)
322 cd08496 PBP2_NikA_DppA_OppA_li 23.5 2E+02 0.0043 29.1 6.4 37 7-45 316-352 (454)
323 TIGR00411 redox_disulf_1 small 23.5 1.6E+02 0.0035 21.5 4.4 36 8-43 2-37 (82)
324 PRK07119 2-ketoisovalerate fer 23.4 1.4E+02 0.0031 29.6 5.2 54 6-63 247-307 (352)
325 PRK07200 aspartate/ornithine c 23.4 2.5E+02 0.0055 28.4 6.9 39 89-127 184-222 (395)
326 cd06187 O2ase_reductase_like T 23.2 1.2E+02 0.0027 27.2 4.4 36 235-276 2-37 (224)
327 PRK12779 putative bifunctional 23.1 3.6E+02 0.0078 30.7 8.8 37 233-274 652-688 (944)
328 PF08532 Glyco_hydro_42M: Beta 22.9 1.4E+02 0.0031 27.0 4.7 39 20-62 28-66 (207)
329 cd05005 SIS_PHI Hexulose-6-pho 22.8 1.6E+02 0.0036 25.7 5.0 54 7-63 75-128 (179)
330 cd06386 PBP1_NPR_C_like Ligand 22.8 3.4E+02 0.0075 26.9 7.9 84 6-101 137-230 (387)
331 TIGR02739 TraF type-F conjugat 22.8 2E+02 0.0043 27.4 5.7 47 7-53 152-198 (256)
332 PRK04148 hypothetical protein; 22.7 1.8E+02 0.0039 24.7 4.9 41 75-127 3-43 (134)
333 CHL00144 odpB pyruvate dehydro 22.7 2.1E+02 0.0046 28.1 6.1 84 10-103 206-296 (327)
334 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.6 2.7E+02 0.0058 22.4 6.0 54 7-63 46-99 (126)
335 CHL00076 chlB photochlorophyll 22.5 4.7E+02 0.01 27.4 9.0 41 24-65 182-226 (513)
336 PTZ00145 phosphoribosylpyropho 22.5 8.6E+02 0.019 25.1 10.5 18 111-128 224-241 (439)
337 PLN02852 ferredoxin-NADP+ redu 22.4 4.2E+02 0.0092 27.7 8.6 84 19-104 77-178 (491)
338 PRK14193 bifunctional 5,10-met 22.4 7.1E+02 0.015 24.0 11.6 111 6-126 32-187 (284)
339 PRK00553 ribose-phosphate pyro 22.4 7.5E+02 0.016 24.3 10.3 114 5-128 6-131 (332)
340 PRK02458 ribose-phosphate pyro 22.4 7.4E+02 0.016 24.3 10.7 110 6-128 7-131 (323)
341 PF02882 THF_DHG_CYH_C: Tetrah 22.4 3.3E+02 0.0072 23.8 6.7 51 67-127 14-64 (160)
342 PLN02306 hydroxypyruvate reduc 22.3 1.2E+02 0.0026 30.6 4.4 32 89-128 162-194 (386)
343 PF01910 DUF77: Domain of unkn 22.3 2.8E+02 0.006 21.8 5.6 63 68-138 14-79 (92)
344 cd00322 FNR_like Ferredoxin re 22.3 81 0.0017 28.2 3.0 45 247-292 8-52 (223)
345 cd08520 PBP2_NikA_DppA_OppA_li 22.3 1.7E+02 0.0037 29.8 5.7 37 8-45 331-367 (468)
346 TIGR01809 Shik-DH-AROM shikima 22.1 2.1E+02 0.0045 27.4 5.8 52 67-128 102-153 (282)
347 cd05212 NAD_bind_m-THF_DH_Cycl 22.1 3.3E+02 0.0072 23.2 6.5 51 67-127 6-56 (140)
348 cd05006 SIS_GmhA Phosphoheptos 22.0 2.6E+02 0.0056 24.4 6.1 55 6-63 100-154 (177)
349 cd01972 Nitrogenase_VnfE_like 22.0 3.2E+02 0.007 27.7 7.6 96 25-128 182-322 (426)
350 PRK00054 dihydroorotate dehydr 22.0 1.5E+02 0.0032 27.6 4.8 38 233-276 8-45 (250)
351 PF01380 SIS: SIS domain SIS d 21.9 93 0.002 25.2 3.0 56 6-64 52-107 (131)
352 TIGR01327 PGDH D-3-phosphoglyc 21.9 1.2E+02 0.0025 32.0 4.4 32 89-128 135-166 (525)
353 COG1182 AcpD Acyl carrier prot 21.8 6.2E+02 0.013 23.1 14.2 121 6-127 1-172 (202)
354 TIGR00521 coaBC_dfp phosphopan 21.8 2.4E+02 0.0053 28.5 6.5 64 64-128 158-230 (390)
355 cd06268 PBP1_ABC_transporter_L 21.8 6E+02 0.013 22.9 9.3 32 6-38 135-166 (298)
356 cd06189 flavin_oxioreductase N 21.7 1.5E+02 0.0033 26.7 4.7 38 233-276 2-39 (224)
357 cd06367 PBP1_iGluR_NMDA N-term 21.7 4.7E+02 0.01 25.4 8.5 71 6-84 136-218 (362)
358 PRK14184 bifunctional 5,10-met 21.7 7.4E+02 0.016 23.9 11.9 112 6-127 31-189 (286)
359 KOG1283 Serine carboxypeptidas 21.6 2.9E+02 0.0063 27.4 6.5 69 18-103 96-164 (414)
360 KOG1448 Ribose-phosphate pyrop 21.5 6.5E+02 0.014 24.5 8.8 117 6-134 1-131 (316)
361 PRK13626 transcriptional regul 21.4 2.5E+02 0.0055 29.6 6.8 67 8-80 404-472 (552)
362 PRK02269 ribose-phosphate pyro 21.4 7.7E+02 0.017 24.1 10.3 18 111-128 110-127 (320)
363 PF14386 DUF4417: Domain of un 21.4 1.9E+02 0.004 26.4 5.0 71 24-99 99-175 (200)
364 COG3320 Putative dehydrogenase 21.3 2.5E+02 0.0053 28.3 6.2 66 5-82 156-221 (382)
365 PRK14477 bifunctional nitrogen 21.2 2.1E+02 0.0046 32.4 6.5 33 88-128 316-348 (917)
366 PRK03372 ppnK inorganic polyph 21.2 1.6E+02 0.0035 28.7 4.9 39 4-42 3-41 (306)
367 PRK02155 ppnK NAD(+)/NADH kina 21.1 2.5E+02 0.0055 27.1 6.2 36 6-41 5-40 (291)
368 PRK04539 ppnK inorganic polyph 21.0 1.7E+02 0.0036 28.5 4.9 37 5-41 4-40 (296)
369 PRK10892 D-arabinose 5-phospha 20.9 5.5E+02 0.012 24.7 8.7 84 9-105 49-135 (326)
370 cd04795 SIS SIS domain. SIS (S 20.8 1.4E+02 0.0031 22.0 3.7 62 17-82 6-72 (87)
371 KOG2333 Uncharacterized conser 20.6 87 0.0019 32.5 2.9 61 325-395 501-570 (614)
372 COG1004 Ugd Predicted UDP-gluc 20.5 3E+02 0.0065 28.0 6.6 64 61-127 255-347 (414)
373 PF02330 MAM33: Mitochondrial 20.4 90 0.002 28.3 2.8 43 316-360 156-198 (204)
374 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.4 4.2E+02 0.0092 21.9 7.0 38 6-43 60-97 (153)
375 TIGR03316 ygeW probable carbam 20.3 3.1E+02 0.0068 27.4 6.8 39 89-127 167-205 (357)
376 PRK05629 hypothetical protein; 20.3 7.8E+02 0.017 23.7 12.2 129 4-156 3-142 (318)
377 cd08489 PBP2_NikA The substrat 20.3 2.2E+02 0.0047 29.2 6.0 38 8-45 335-372 (488)
378 PF08643 DUF1776: Fungal famil 20.2 3.6E+02 0.0078 26.3 7.0 33 17-49 172-204 (299)
379 PRK14027 quinate/shikimate deh 20.1 2.4E+02 0.0053 27.0 5.9 46 72-128 110-155 (283)
380 PRK15083 PTS system mannitol-s 20.1 1.8E+02 0.0039 31.5 5.4 38 6-43 378-416 (639)
381 PRK13370 mhpB 3-(2,3-dihydroxy 20.0 8.2E+02 0.018 23.9 10.4 80 20-105 87-179 (313)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=3.6e-71 Score=537.84 Aligned_cols=354 Identities=42% Similarity=0.646 Sum_probs=298.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
++++|+||||||||+.+|+.|++++.++|+.+.|+.+|+|++++|....+|||+|||+|+|++|+||++||+.|.++++|
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~~~~~V~s~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLp 80 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRGLQCLVMSMDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLP 80 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhccCCceEeeccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhccch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCCCCCCC
Q 015866 87 KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQ 166 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~~ 166 (399)
...|++++|||||||||+|++||.++|+|++||.+|||+.++++++||++++.|++.+|.+|..++|..|....++ ..
T Consensus 81 s~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~p--~~ 158 (574)
T KOG1159|consen 81 STILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYPP--YR 158 (574)
T ss_pred HHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877652 11
Q ss_pred CCCCccccccccCCCceEEEEeccCccccccccccchhhhhhhhhhhhccccccccCcCCCCccee-eeeeeeecCCCCC
Q 015866 167 GPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSGS 245 (399)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Lt~~~~ 245 (399)
+-. .+..+.+ .++.|++-...... ..+.... ..+ ...... +|+.|++||+.+|
T Consensus 159 ~~t-~l~~~~~-~~~k~~~l~~~~~~---~~~d~~~--------------------v~~-~~~~~~~k~~~N~rlT~~~H 212 (574)
T KOG1159|consen 159 PET-DLIPTVQ-ITTKYSLLELGKAS---DFSDSDI--------------------VLE-PQGQIPAKLVENRRLTSADH 212 (574)
T ss_pred Ccc-cCCCccc-ccchhhhhhccccc---cCCcchh--------------------hhc-cccccccchhcceeecCcch
Confidence 000 1111111 22333322111100 0000000 000 011222 8999999999999
Q ss_pred CceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCCCCCCCCCHHHHHH
Q 015866 246 GKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVE 325 (399)
Q Consensus 246 ~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~~~~~~~tl~~ll~ 325 (399)
+|+|||++|+++++.+.|+|||++.|+|.|+++.|++|++.+||++++...+.+.+... ++..++++.|+|++++++
T Consensus 213 fQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~---~~~~~~~~~p~sl~~~lk 289 (574)
T KOG1159|consen 213 FQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR---SSPLPLLPNPLSLLNLLK 289 (574)
T ss_pred hheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc---cccccccCCchhHHHHHH
Confidence 99999999999988999999999999999999999999999999998766555443321 111235779999999999
Q ss_pred HhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCC
Q 015866 326 LTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAF 392 (399)
Q Consensus 326 ~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~ 392 (399)
+|+|+++ +|+|+||..|++|++|+.||+||++++|++|.++|++|+.++|||++|||+||+++..|
T Consensus 290 ~~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp 355 (574)
T KOG1159|consen 290 YVLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLP 355 (574)
T ss_pred Hhccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCC
Confidence 9999999 99999999999999999999999999999999999999999999999999999965443
No 2
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1e-57 Score=478.18 Aligned_cols=313 Identities=28% Similarity=0.443 Sum_probs=264.3
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
++++|+|+|||||||||.+|++|++.+.+.|+.+++.+++++++.++.+++.+||++||||+|+||+||..|+++|...+
T Consensus 57 ~~~~i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~ 136 (597)
T TIGR01931 57 QEKRVTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKK 136 (597)
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCCCCC
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF 164 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~ 164 (399)
.+ .|+|++|||||+||++|++||.++|.+|++|+++||+++++++.+|.+ +++.|++|.+++|++|....+ .
T Consensus 137 ~~--~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~~----~e~~~~~W~~~~~~~l~~~~~--~ 208 (597)
T TIGR01931 137 AP--KLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADLD----YDANAAEWRAGVLTALNEQAK--G 208 (597)
T ss_pred Cc--ccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCccC----hHHHHHHHHHHHHHHHHhhcc--C
Confidence 43 589999999999999999999999999999999999999999999864 789999999999999976543 1
Q ss_pred CCCCCCccccccccCCCceEEEEeccCccccccccccchhhhhhhhhhhhccccccccCcCCCCccee-eeeeeeecCCC
Q 015866 165 PQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKS 243 (399)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Lt~~ 243 (399)
.. ..+.+.+...... . .. ..+.+.+++. +|+.|++||+.
T Consensus 209 ~~------------~~~~~~~~~~~~~-----------~---------------~~--~~~~~~~p~~a~v~~n~~lt~~ 248 (597)
T TIGR01931 209 SA------------STPSLSETPARSQ-----------T---------------AT--SVYSKQNPFRAEVLENQKITGR 248 (597)
T ss_pred cc------------CCCcceecccccc-----------c---------------cc--CCccCCCCeEEEEEeeEecCCC
Confidence 10 0111111100000 0 00 0112233455 89999999999
Q ss_pred CCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCCCCCCCCCHHHH
Q 015866 244 GSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF 323 (399)
Q Consensus 244 ~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~~~~~~~tl~~l 323 (399)
+++|+|+||+|+++++++.|+|||+|+|||+|+++.|+++|++||+++++.|++.. .++|++++
T Consensus 249 ~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~~----------------~~~tl~~~ 312 (597)
T TIGR01931 249 NSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIGG----------------KTIPLFEA 312 (597)
T ss_pred CCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeCC----------------CCcCHHHH
Confidence 99999999999999889999999999999999999999999999999999887631 57899999
Q ss_pred HHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCCc
Q 015866 324 VELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAFH 393 (399)
Q Consensus 324 l~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~~ 393 (399)
|++|+||+. |++.||+.||++|+|+..++ +++ +.+.+.+|+. +++++|||++|+ |.++
T Consensus 313 l~~~~dl~~--~~~~~l~~la~~~~~~~l~~----~~~--~~~~~~~y~~--~~~~~dvl~~fp--~~~~ 370 (597)
T TIGR01931 313 LITHFELTQ--NTKPLLKAYAELTGNKELKA----LIA--DNEKLKAYIQ--NTPLIDLIRDYP--ADLD 370 (597)
T ss_pred HHhceeCCC--CCHHHHHHHHHhcCCHHHHH----Hhc--CHHHHHHHHc--CCCHHHHHHHCC--CCCC
Confidence 999999997 68999999999999986554 333 5677888985 799999999987 5554
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=2.5e-57 Score=473.31 Aligned_cols=313 Identities=25% Similarity=0.371 Sum_probs=261.1
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
++++++|+|||||||||.+|++|++.+.++|+.+++.+++++++.+|.+++.+||++||||+|+||+|+..||++|....
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~ 139 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK 139 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCCCCC
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF 164 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~ 164 (399)
.+ .|.|++|||||||||+|++||.++|.+|++|+++||+++++++++|.+ +++.|++|.+++|++|....+ .
T Consensus 140 ~~--~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~~----~e~~~~~W~~~~~~~l~~~~~--~ 211 (600)
T PRK10953 140 AP--KLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADVE----YQAAASEWRARVVDALKSRAP--A 211 (600)
T ss_pred Cc--CCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccccc----cHHHHHHHHHHHHHHHHhhcC--C
Confidence 43 599999999999999999999999999999999999999999988764 789999999999999976543 1
Q ss_pred CCCCCCccccccccCCCceEEEEeccCccccccccccchhhhhhhhhhhhccccccccCcCCCCccee-eeeeeeecCCC
Q 015866 165 PQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKS 243 (399)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Lt~~ 243 (399)
.... . ........ ... .. ..+.+.+++. +|+.|++||+.
T Consensus 212 ~~~~---~-------~~~~~~~~-~~~-------------------~~----------~~~~~~~p~~a~v~~n~~Lt~~ 251 (600)
T PRK10953 212 VAAP---S-------QSVATGAV-NEI-------------------HT----------SPYSKEAPLTASLSVNQKITGR 251 (600)
T ss_pred cccc---c-------cccccccc-ccc-------------------cc----------CCCCCCCCeEEEEEEEeecCCC
Confidence 1100 0 00000000 000 00 0011233455 99999999999
Q ss_pred CCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCCCCCCCCCHHHH
Q 015866 244 GSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF 323 (399)
Q Consensus 244 ~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~~~~~~~tl~~l 323 (399)
++.|+||||+|+++++++.|+|||+|+|||.|+++.|+++|++||+++++.|.+.. .++|++++
T Consensus 252 ~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~----------------~~~tl~~~ 315 (600)
T PRK10953 252 NSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG----------------KTLPLAEA 315 (600)
T ss_pred CCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC----------------CCCCHHHH
Confidence 99999999999998889999999999999999999999999999999999887741 57899999
Q ss_pred HHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCCc
Q 015866 324 VELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAFH 393 (399)
Q Consensus 324 l~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~~ 393 (399)
|++|+||+. |++.||+.+|+++.++. |+++++ +++.+.+|+. +++++|||++|+ +.++
T Consensus 316 l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~--~~~~ 373 (600)
T PRK10953 316 LQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP--AQLD 373 (600)
T ss_pred HHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC--CCCC
Confidence 999999997 68899999999998753 444543 5667778875 799999999986 3444
No 4
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.6e-49 Score=408.74 Aligned_cols=365 Identities=28% Similarity=0.425 Sum_probs=280.4
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC-CCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l-~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+.+.+++|+|+|+||+++.+|.++++.+ +-++...+.+.+++...+ ....+++++.+|||+|+||+|++.|.++|..
T Consensus 44 ~~~~~~~v~~~s~tgtae~~a~~l~~~~--~~~~~~~~~~~d~~~~~l~~~~~l~~~~~at~g~gd~~dn~~~f~~~l~~ 121 (645)
T KOG1158|consen 44 AKRVKATVLYGSQTGTAEDFAKRLSEIF--ARFELKVLKVADYDLYALEDHEKLLVVVLATYGEGDPPDNAEAFYQSLTE 121 (645)
T ss_pred ccceeEEEEeccCCCCHHHHHHHHHHHh--hhccccceeecchhhcccccccceeeeeeehhcCCCCCccHHHHHHHHhh
Confidence 3467899999999999999999999998 456677777777766666 5668999999999999999999999999988
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCCC
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPS 162 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~~ 162 (399)
.+.. ....++|+|||+|++.|.+||.+++.++++|+++|++++...+.||+.. +.+++|..|++.+|+.++..+.
T Consensus 122 ~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~--~~e~~f~~w~~~~~~~~~~~f~- 196 (645)
T KOG1158|consen 122 LKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDA--GLEEDFRTWKKPLLPELCETFS- 196 (645)
T ss_pred ccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccc--cchhHHHHHHHHHhHhhhheee-
Confidence 7544 3445899999999999999999999999999999999999999999986 4899999999999999988776
Q ss_pred CCCCCCCCccccccccCCCceEEEEeccCccccccccccchhhhhhhhhhhhccccccccCcCCCCccee-eeeeeeecC
Q 015866 163 FFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLT 241 (399)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Lt 241 (399)
+.... ..++... -..+.... .... +.... ...+.........+..+..++. .++.+..|.
T Consensus 197 -~~~~~--~~~~~~~--~~~~~~~~--~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (645)
T KOG1158|consen 197 -LEEDE--ATKEDET--IRQYRTWT--PNDP-PFVPQ-----------AFPPELLNLLSSTPFDKVFPFPALVVVNLALS 257 (645)
T ss_pred -ecccc--ccCCccc--ccccccCc--Cccc-ccccc-----------ccCccccccccCCcchhcccchhhhhHHhhcc
Confidence 32110 0000000 00000000 0000 00000 0000000000000001122333 566677787
Q ss_pred CCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEE--eecCCCCCCCCcCCCCCCCCCC
Q 015866 242 KSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITV--QHKEMKNYLPDIHKNTTEVPIK 319 (399)
Q Consensus 242 ~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i--~~~~~~~~~p~~~~~~~~~~~t 319 (399)
.+.+.+.++|++++..++++.|+||||++|+|.|+.+.|+.+|++|+++++..+.+ .....+.+.|.|...+++.|+|
T Consensus 258 ~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t 337 (645)
T KOG1158|consen 258 TPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTT 337 (645)
T ss_pred CCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCc
Confidence 77788999999999998899999999999999999999999999999987644433 3222111345556667889999
Q ss_pred HHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCCcccc
Q 015866 320 LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAFHLIL 396 (399)
Q Consensus 320 l~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~~~~~ 396 (399)
++++|++|+||++ +|++++|+.||+||+|+.||++|+.|+|.+|..+|.+|+...++|++|||++|++ |+||+-+
T Consensus 338 ~~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps-~kpP~~~ 412 (645)
T KOG1158|consen 338 LRTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPS-CKPPLPH 412 (645)
T ss_pred HHHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCC-CCCCHHH
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999776 8888744
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-46 Score=383.46 Aligned_cols=314 Identities=34% Similarity=0.526 Sum_probs=270.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
...++|+|||+|||++.+|..+++.+...|+.+.+.+++++++.++.....++|++||+|+|++|+|+..|+++|...+.
T Consensus 47 ~~~~~il~~sqtG~a~~~A~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~st~geGe~p~na~~f~~~l~~~~a 126 (587)
T COG0369 47 NKPITVLYGSQTGNAEGLAEELAKELEAAGLQVLVASLDDYKPKDIAEERLLLFVVSTQGEGEPPDNAVAFHEFLKGKKA 126 (587)
T ss_pred CCceEEEEccCCccHHHHHHHHHHHHHhcCCceeecchhhcChhhHHhhhceEEEEccccCCCCCCchHHHHHHhccccc
Confidence 56799999999999999999999999999999999999999998887667899999999999999999999999987644
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCCCCCC
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFP 165 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~ 165 (399)
+ .|.+++|+|||+||++|..||.++|.++++|..+||.++.+++.+|.+ ++++...+|...+++.+...++ ..
T Consensus 127 ~--~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~---~~e~~~~~w~~~~~~~l~~~~~--~~ 199 (587)
T COG0369 127 P--KLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ---DFEAAAAPWRDDVLELLKSKFP--GQ 199 (587)
T ss_pred c--cccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc---ccchhhhHHHHHHHHHHHhhcc--cc
Confidence 3 689999999999999999999999999999999999999999999997 2899999999999999987665 22
Q ss_pred CCCCCccccccccCCCceEEEEeccCccccccccccchhhhhhhhhhhhccccccccCcCCCCccee-eeeeeeecCCCC
Q 015866 166 QGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSG 244 (399)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Lt~~~ 244 (399)
... ....+. ..... ..+.+..++. .+..|++|+..+
T Consensus 200 ~~~----------~~~~~~----~~~~~-----------------------------~~~~~~~~~~a~~~~n~~l~~~~ 236 (587)
T COG0369 200 EAA----------PAQVAT----SPQSE-----------------------------SPYSKPAPSVAILLENRKLTGRD 236 (587)
T ss_pred ccc----------cccccc----hhccc-----------------------------ccccccCcceeEeeccccCCccc
Confidence 110 000000 00000 1112233444 899999999999
Q ss_pred CCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCCCCCCCCCHHHHH
Q 015866 245 SGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFV 324 (399)
Q Consensus 245 ~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~~~~~~~tl~~ll 324 (399)
++|+++||+|+++++++.|+|||+++|||.|+++.|+.+|+.|||++++.|.+. + .++++.++|
T Consensus 237 ~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~--------~--------~~~~~~~~l 300 (587)
T COG0369 237 SDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD--------G--------ETLPLVEAL 300 (587)
T ss_pred cCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC--------C--------CcchHHHHH
Confidence 999999999999988999999999999999999999999999999999777442 2 789999999
Q ss_pred HHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCCcc
Q 015866 325 ELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAFHL 394 (399)
Q Consensus 325 ~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~~~ 394 (399)
++|+|+++ .| |+|+..|+.++.++..|+.|+.++ ..+++.|+. +++++|+|++|++ |.+|+
T Consensus 301 ~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~-~~l~~ 361 (587)
T COG0369 301 KSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPP-AKLPA 361 (587)
T ss_pred HHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccc-cCCCH
Confidence 99999999 87 999999999999999999999887 567777776 8999999999877 66654
No 6
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=4.6e-36 Score=260.57 Aligned_cols=146 Identities=25% Similarity=0.312 Sum_probs=134.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|++|.|+|||+|||||.+|++|++.+.+.|+.++++++.+ ++++.+++.+||++||||+|++|+|++.|+++|+...
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~- 77 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQK- 77 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcC-
Confidence 4589999999999999999999999999999999988765 5678899999999999999999999999999997742
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
..|+|++|||||+|||+|++||.+++.++++|+++||+++.+++++|+....+.++.|++|.++++.+|
T Consensus 78 --~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 78 --PDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred --CCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 258999999999999999999999999999999999999999999999866557999999999988754
No 7
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=9.6e-36 Score=259.46 Aligned_cols=147 Identities=31% Similarity=0.418 Sum_probs=133.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|+++.|+|||+|||||.+|++|++.|.+.|+++.+.++++++...+.+++.+||++||||+|++|+|+..|+++|++..
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~- 79 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTA- 79 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcC-
Confidence 4689999999999999999999999999999999999988754444567899999999999999999999999997541
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
..|+|++|||||+|||+|++||.+++.++++|+++||+++.+++++|++++.+.++.|++|.++ |..+
T Consensus 80 --~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 80 --GYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred --cccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 2589999999999999999999999999999999999999999999998876789999999999 6543
No 8
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=3.2e-35 Score=256.25 Aligned_cols=147 Identities=24% Similarity=0.303 Sum_probs=129.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCC--CCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE--EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~--~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
+++.|+|||+|||||.+|++|++.|.+.|+++.+... .+..++.. .+.+||++||||+|++|+|+..|+++|++..
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~--~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~ 78 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPR--ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQL 78 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCc--CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcC
Confidence 5899999999999999999999999999998876433 33334443 3789999999999999999999999997642
Q ss_pred CCccccCCceEEEEecCCCCc-hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHH
Q 015866 85 LSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y-~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~ 157 (399)
+ ..|+|++|||||+|||+| ++||.+++.++++|+++||+++++++++|++...+++++|++|++++|++|.
T Consensus 79 -~-~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 79 -P-AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred -c-cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 2 259999999999999999 6999999999999999999999999999998654589999999999999874
No 9
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=2.8e-34 Score=266.26 Aligned_cols=160 Identities=37% Similarity=0.591 Sum_probs=134.9
Q ss_pred cee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCC
Q 015866 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 308 (399)
Q Consensus 230 ~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~ 308 (399)
++. +|++|++||+++++|+++||+|++++.++.|+|||+|+|||+|+++.|++++++||+++++.|.++.......
T Consensus 8 p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~--- 84 (219)
T PF00667_consen 8 PFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNS--- 84 (219)
T ss_dssp -EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSS---
T ss_pred CEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEecccccc---
Confidence 455 9999999999999999999999999889999999999999999999999999999999999999987664210
Q ss_pred cCCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhccc
Q 015866 309 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYI 388 (399)
Q Consensus 309 ~~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~ 388 (399)
...+++.++||+++|++|+||++ +|+|+||+.||+||+|+.+|++|++|++.+|+++|.+|+.++++|++|+|++|++
T Consensus 85 -~~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fps 162 (219)
T PF00667_consen 85 -VKPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFPS 162 (219)
T ss_dssp -CCSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHSTT
T ss_pred -cccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCcc
Confidence 11236699999999999999999 9999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCccc
Q 015866 389 ICAFHLI 395 (399)
Q Consensus 389 ~~~~~~~ 395 (399)
|.+|+-
T Consensus 163 -~~~pl~ 168 (219)
T PF00667_consen 163 -CKPPLE 168 (219)
T ss_dssp -BTC-HH
T ss_pred -cCCCHH
Confidence 677763
No 10
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.97 E-value=2.9e-30 Score=259.50 Aligned_cols=156 Identities=22% Similarity=0.391 Sum_probs=140.0
Q ss_pred eeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCC--CCcEEEEeecC--CC--CCCC
Q 015866 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD--PDALITVQHKE--MK--NYLP 307 (399)
Q Consensus 234 v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~--~~~~v~i~~~~--~~--~~~p 307 (399)
|++|++||+++++|+++||+|++.+.++.|+|||||+|+|+|+++.|+++|++||++ ++..+.++... .. ..+|
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKKNAKVP 81 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccC
Confidence 678999999999999999999998788999999999999999999999999999999 78888886421 11 1233
Q ss_pred CcCCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcc
Q 015866 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEY 387 (399)
Q Consensus 308 ~~~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~ 387 (399)
.++|.++|++++|++||||++ +|+++||+.||+||+|+.+|++|.+|++.+|+++|++|+.++++|++|||++|+
T Consensus 82 ----~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~ 156 (398)
T cd06203 82 ----VHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFP 156 (398)
T ss_pred ----CCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCC
Confidence 235688999999999999999 999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCccc
Q 015866 388 IICAFHLI 395 (399)
Q Consensus 388 ~~~~~~~~ 395 (399)
+ |.+|+-
T Consensus 157 s-~~~pl~ 163 (398)
T cd06203 157 S-CRPPLS 163 (398)
T ss_pred C-CCCCHH
Confidence 5 778875
No 11
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.97 E-value=1.2e-29 Score=256.27 Aligned_cols=154 Identities=26% Similarity=0.393 Sum_probs=139.6
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCC-CCcEEEEeecCCCC--CCCCc
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD-PDALITVQHKEMKN--YLPDI 309 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~-~~~~v~i~~~~~~~--~~p~~ 309 (399)
+|++|++||++ ++|+++||+|++++.++.|+|||+|+|+|+|+++.|+++|++||++ +++.|.+....... ..|
T Consensus 9 ~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~~~~~~-- 85 (416)
T cd06204 9 PVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPASKKVP-- 85 (416)
T ss_pred EEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcccccCCC--
Confidence 89999999998 9999999999998778999999999999999999999999999999 89999887554211 222
Q ss_pred CCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccC
Q 015866 310 HKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYII 389 (399)
Q Consensus 310 ~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~ 389 (399)
++.|+|++++|++||||++ +|++.||+.||+||+|+.+|++|++|+| +|.++|.+|+.++++|++|||++|+++
T Consensus 86 ----~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f~s~ 159 (416)
T cd06204 86 ----FPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFPSA 159 (416)
T ss_pred ----CCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhCccc
Confidence 6689999999999999999 9999999999999999999999999999 999999999999999999999998874
Q ss_pred C--CCccc
Q 015866 390 C--AFHLI 395 (399)
Q Consensus 390 ~--~~~~~ 395 (399)
+ .+|+-
T Consensus 160 ~~~~~pl~ 167 (416)
T cd06204 160 KPTPPPFD 167 (416)
T ss_pred CCCCCCHH
Confidence 4 27764
No 12
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.96 E-value=1.1e-29 Score=219.87 Aligned_cols=138 Identities=46% Similarity=0.631 Sum_probs=124.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC--cCCCCCCCeEEEEeecCCCCCCchhHH-HHHHHHHhcc--C
Q 015866 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMK-VFWRFLLQKS--L 85 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~--~~~l~~~~~ii~~~sT~g~G~~p~~~~-~f~~~L~~~~--~ 85 (399)
|+|+|+|||||++|+.|++.|.++|++++++++++++ +.++..++.+||++||||+|++|+++. .|.+++.... .
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~ 80 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKEL 80 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGG
T ss_pred CEEECCchhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccc
Confidence 8999999999999999999999999999999999999 448899999999999999999999988 5666665431 1
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPW 148 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W 148 (399)
....+++++|+|||+||+.|+.||.++|.++++|+++|++++.+++.+|+...++.++.|++|
T Consensus 81 ~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 81 SKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp GGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 234689999999999999999999999999999999999999999999998644589999999
No 13
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.96 E-value=1.5e-28 Score=246.11 Aligned_cols=151 Identities=33% Similarity=0.498 Sum_probs=136.4
Q ss_pred eeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCC-CCCCCcCCC
Q 015866 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK-NYLPDIHKN 312 (399)
Q Consensus 234 v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~-~~~p~~~~~ 312 (399)
|++|++||+.+++|+|+||+|+++++++.|+|||||+|+|+|+++.|+++|++||+++++.|+++++... ...|
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~----- 76 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQRGKPP----- 76 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccccccCCC-----
Confidence 6789999999999999999999987889999999999999999999999999999999999988754311 1122
Q ss_pred CCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCC
Q 015866 313 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAF 392 (399)
Q Consensus 313 ~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~ 392 (399)
++.|+|++++|++||||++ +|++++|+.||.||+|+.+|++|.+|++.++.++|.+| ++++++|+|++|++ |.+
T Consensus 77 -~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~-~~~ 150 (382)
T cd06207 77 -FPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPS-VRP 150 (382)
T ss_pred -CCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCc-CCC
Confidence 6689999999999999999 99999999999999999999999999999999999988 78999999999876 777
Q ss_pred ccc
Q 015866 393 HLI 395 (399)
Q Consensus 393 ~~~ 395 (399)
|+-
T Consensus 151 ~~~ 153 (382)
T cd06207 151 TLE 153 (382)
T ss_pred CHH
Confidence 764
No 14
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.96 E-value=1.7e-28 Score=245.92 Aligned_cols=149 Identities=21% Similarity=0.331 Sum_probs=134.3
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 312 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~ 312 (399)
||++|++||+++++|+++||+|+++ +++.|+|||+|+|+|+|+++.|+++|++||+++++.|.+.+......+|
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~-~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~~~~~p----- 74 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGSATGLP----- 74 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECC-CCCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCCCCCCC-----
Confidence 5889999999999999999999997 5899999999999999999999999999999999999887643332344
Q ss_pred CCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCC
Q 015866 313 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAF 392 (399)
Q Consensus 313 ~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~ 392 (399)
++.|+|++++|++|+||++ +|+++||+.||+||+|+.+|++|..++ .++|.+++..+++|++|||++|++ |.+
T Consensus 75 -~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s-~~~ 147 (384)
T cd06206 75 -LGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPS-IAL 147 (384)
T ss_pred -CCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCC-CCC
Confidence 5689999999999999999 999999999999999999999999886 357889999999999999999876 777
Q ss_pred cc
Q 015866 393 HL 394 (399)
Q Consensus 393 ~~ 394 (399)
|+
T Consensus 148 ~~ 149 (384)
T cd06206 148 PL 149 (384)
T ss_pred CH
Confidence 76
No 15
>PRK07308 flavodoxin; Validated
Probab=99.96 E-value=5e-28 Score=210.47 Aligned_cols=143 Identities=27% Similarity=0.289 Sum_probs=126.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|+++.|+|+|+||||+++|+.|++.+.+.|+.+++.++++.+..++.+++.|||++||||+|.+|+++..|+++|...
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~-- 78 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADL-- 78 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcC--
Confidence 357999999999999999999999999999999999999988888889999999999999999999999999999654
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~ 153 (399)
.+++++|+|||+||+.|+|||.+++.++++|.++|++++.+...+|..-+....+...+|.++|.
T Consensus 79 ---~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 143 (146)
T PRK07308 79 ---DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEELA 143 (146)
T ss_pred ---CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999988887743223455556666654
No 16
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.96 E-value=6.1e-28 Score=243.15 Aligned_cols=160 Identities=23% Similarity=0.345 Sum_probs=135.8
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecC-CCcccccCCEEEEccCCCHHHHHHHHHHcCCC--CCcEEEEeecCCCC---CC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD--PDALITVQHKEMKN---YL 306 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~-~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~--~~~~v~i~~~~~~~---~~ 306 (399)
+|++|++||++++.|+++||+|++++ +++.|+|||+|+|||+|+++.|+++|++|++. .++.+.++...... +.
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 47889999999999999999999986 68999999999999999999999999999984 46777776432211 00
Q ss_pred C-CcCCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhh
Q 015866 307 P-DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFG 385 (399)
Q Consensus 307 p-~~~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~ 385 (399)
. +|....++.|+|++++|++||||++ +|+++||+.||.||+|+.+|++|++|++ +.++|++|+.++++|++|||++
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~ 157 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEE 157 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHh
Confidence 0 1112235569999999999999999 9999999999999999999999999997 8889999999999999999999
Q ss_pred cccCCCCcccc
Q 015866 386 EYIICAFHLIL 396 (399)
Q Consensus 386 f~~~~~~~~~~ 396 (399)
|++ |.+|+..
T Consensus 158 f~s-~~~~~~~ 167 (406)
T cd06202 158 FPS-LQVPASL 167 (406)
T ss_pred CCc-CCCCHHH
Confidence 876 6777643
No 17
>PRK06703 flavodoxin; Provisional
Probab=99.94 E-value=4.5e-26 Score=199.27 Aligned_cols=147 Identities=29% Similarity=0.305 Sum_probs=130.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|++++|+|+|+||||+++|+.|++.+.+.|+++++.++++.+..++.+++.|||++||||.|.+|+++..|+++|...
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~-- 78 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI-- 78 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcC--
Confidence 478999999999999999999999999999999999999988778889999999999999999999999999998654
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCC-CCcccchhhHHHHHHHHHH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP-SGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~-~g~~~~~~~W~~~l~~~l~ 157 (399)
.+++++++|||+||++|++||.+++.++++|+++|++++.+....+..-. +...+.+.+|.++|.+.+.
T Consensus 79 ---~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 79 ---DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999988887766532 1245677899988877654
No 18
>PRK06756 flavodoxin; Provisional
Probab=99.92 E-value=4.2e-24 Score=186.16 Aligned_cols=146 Identities=26% Similarity=0.300 Sum_probs=122.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
+|+++|+|+|+||||+++|+.|++.+++.|++++++++.+.. ..++.+++.|||++||||.|.+|+++..|++.|...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~- 79 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSI- 79 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcC-
Confidence 479999999999999999999999999999999999987653 456788999999999999999999999999998543
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
.++|+++++||+|++.|+|||.+.+.+.+.|+++|++.+.+...+...-+....+.++.|.+.+.++|
T Consensus 80 ----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 80 ----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred ----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999998877754422112333455655555443
No 19
>PRK09271 flavodoxin; Provisional
Probab=99.91 E-value=1.4e-23 Score=185.37 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=117.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc----CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~----~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
|+++|+|+|+|||||++|+.|++.|.+.|+++++.++++.+. .++.+++.|||++||||+|.+|+++..|+++|..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~ 80 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE 80 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999888876653 3456789999999999999999999999999976
Q ss_pred ccCCccccCCceEEEEecCCCCc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCC-CcccchhhHHHHHHHHH
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS-GYEGALDPWMRSLWRRL 156 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~-g~~~~~~~W~~~l~~~l 156 (399)
.. .++++++|||+||+.| .+||.+++.++++|... .+...++..-.. ...+.+.+|..++++.+
T Consensus 81 ~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 81 TI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred Hh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHHh
Confidence 42 3678999999999999 68999999999999864 355555543111 12478899999999888
No 20
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.90 E-value=4.1e-23 Score=177.59 Aligned_cols=138 Identities=32% Similarity=0.388 Sum_probs=118.3
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCc-hhHHHHHHHHHhccCCc
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP-DSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p-~~~~~f~~~L~~~~~~~ 87 (399)
|+|+|+|+||||+++|+.|++.+.+.|++++++++.+.++.++..++.|||++|||+.|.+| +++..|+++|...
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~---- 76 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDI---- 76 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhC----
Confidence 58999999999999999999999999999999999998888888999999999999999998 8999999998653
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHH
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l 152 (399)
.++|++++|||+|++.|+ ||.+.+.++++|+++|++++.+....+..-+....+.+++|.++|
T Consensus 77 -~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 77 -DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKDL 139 (140)
T ss_pred -CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHHh
Confidence 378999999999999888 999999999999999999999876665432212334455565443
No 21
>PRK12359 flavodoxin FldB; Provisional
Probab=99.89 E-value=2.1e-22 Score=178.86 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=119.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
|++.|+|+|.|||||.+|++|++.+. +..+++.++++++++++.+++.|||++||||.|++|+.+..|+..|...
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg--~~~v~v~~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~--- 75 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG--EELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDL--- 75 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC--CCeEEEEEcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhhC---
Confidence 68999999999999999999999873 2237899999998888999999999999999999999999999988654
Q ss_pred ccccCCceEEEEecCCC-Cc-hhHHHHHHHHHHHHHhCCCeeeccce----------------------eecCCCC-CCc
Q 015866 87 KQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAVVERG----------------------LGDDQHP-SGY 141 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds-~y-~~f~~~~k~l~~~L~~lGa~~~~~~~----------------------~~D~~~~-~g~ 141 (399)
.|+|+++|+||+||+ .| .+||.+.+.++++|++.||+.+...- ..|+.+. +-.
T Consensus 76 --dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t 153 (172)
T PRK12359 76 --NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDEVNQYDLS 153 (172)
T ss_pred --CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcCCCchhhh
Confidence 489999999999998 58 58999999999999999998663211 1232221 124
Q ss_pred ccchhhHHHHHHHHHH
Q 015866 142 EGALDPWMRSLWRRLH 157 (399)
Q Consensus 142 ~~~~~~W~~~l~~~l~ 157 (399)
++.++.|.++|.+.+.
T Consensus 154 ~~ri~~W~~~~~~~~~ 169 (172)
T PRK12359 154 DERIQQWCEQILLEMA 169 (172)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7889999999887664
No 22
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.89 E-value=4.9e-23 Score=204.60 Aligned_cols=133 Identities=22% Similarity=0.333 Sum_probs=114.7
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 312 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~ 312 (399)
+|++|++||+++++++++||+|+++++++.|+|||||+|+|+|+++.|+++|++||+++++.|.+ .
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~-------~------- 66 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST-------V------- 66 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC-------C-------
Confidence 47889999999999999999999997789999999999999999999999999999999987753 1
Q ss_pred CCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhccc-CCC
Q 015866 313 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYI-ICA 391 (399)
Q Consensus 313 ~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~-~~~ 391 (399)
.+.++|++++|++|+||++ + .++.|+.+|+++.++++|.. +++++|.+ ++|++|||++|+. .|+
T Consensus 67 -~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 67 -GGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 2378999999999999998 5 55568889999888888875 57877754 5899999999882 467
Q ss_pred Ccc
Q 015866 392 FHL 394 (399)
Q Consensus 392 ~~~ 394 (399)
||+
T Consensus 132 ~~~ 134 (360)
T cd06199 132 LTA 134 (360)
T ss_pred CCH
Confidence 664
No 23
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.89 E-value=8.6e-23 Score=176.32 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=108.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcE-EEeCCCCC--cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhc
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVV-VRPVDDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~-v~~l~~~~--~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~ 83 (399)
|+++|+|+|+||||+++|+.|++.+...|++++ +.++.+++ ..++.+++.+||++||||.|.+|+++..|+++|..
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~- 79 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY- 79 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc-
Confidence 589999999999999999999999999998887 56666432 34567899999999999999999999999998732
Q ss_pred cCCccccCCceEEEEecCCCCc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCC-CCcccchhhHHHHH
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP-SGYEGALDPWMRSL 152 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~-~g~~~~~~~W~~~l 152 (399)
+++++++||+||+.| .+||.+++.++++|+++ .+.++++..-. +.....+.+|.+++
T Consensus 80 -------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~-----~~~~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 80 -------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSS-----HPVLKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred -------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCc-----CCceeEecCCcccccHHHHHHHHHHh
Confidence 579999999999999 58999999999999776 24445544321 11356678998875
No 24
>PRK06214 sulfite reductase; Provisional
Probab=99.88 E-value=2.8e-22 Score=206.21 Aligned_cols=138 Identities=25% Similarity=0.329 Sum_probs=116.4
Q ss_pred Cccee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 015866 228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 306 (399)
Q Consensus 228 ~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~ 306 (399)
.+++. +|++|++||+++++|+++||+|+++++++.|+|||+|+|+|.|+++.|+++|++||++++..+
T Consensus 166 ~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~----------- 234 (530)
T PRK06214 166 DNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI----------- 234 (530)
T ss_pred CCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----------
Confidence 34555 899999999999999999999999988899999999999999999999999999999987432
Q ss_pred CCcCCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhc
Q 015866 307 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGE 386 (399)
Q Consensus 307 p~~~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f 386 (399)
.++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.++.+... ..++++|+|++|
T Consensus 235 ---------~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vldvL~~f 297 (530)
T PRK06214 235 ---------GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLAALEKF 297 (530)
T ss_pred ---------CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHHHHHhC
Confidence 46899999999999998 65 899999999998765 88888887644433222 246899999998
Q ss_pred ccCCCCcc
Q 015866 387 YIICAFHL 394 (399)
Q Consensus 387 ~~~~~~~~ 394 (399)
++ |.+|+
T Consensus 298 p~-~~~~~ 304 (530)
T PRK06214 298 PG-IRPDP 304 (530)
T ss_pred CC-CCCCH
Confidence 76 66664
No 25
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.88 E-value=5.3e-22 Score=176.47 Aligned_cols=116 Identities=29% Similarity=0.330 Sum_probs=104.1
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCc
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~ 87 (399)
++.|+|+|+||||+++|+.|++.+.+ ..++++++++.+..++.+++.+||++||||.|.+|+++..|++.|...
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~--~~~~i~~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~---- 74 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE--DDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEEL---- 74 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcC----
Confidence 57999999999999999999999864 458899999887778889999999999999999999999999988543
Q ss_pred cccCCceEEEEecCCC-Cch-hHHHHHHHHHHHHHhCCCeeeccc
Q 015866 88 QWLEGVRYAVFGLGDS-GYQ-KFNFVAKKLDNRLLDLGATAVVER 130 (399)
Q Consensus 88 ~~l~~~~~avfGlGds-~y~-~f~~~~k~l~~~L~~lGa~~~~~~ 130 (399)
.++|+++++||+||+ .|+ +||.+.+.+++.|+++|++++...
T Consensus 75 -~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 75 -DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW 118 (167)
T ss_pred -CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence 478999999999998 574 999999999999999999988654
No 26
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.87 E-value=1.6e-21 Score=170.57 Aligned_cols=145 Identities=28% Similarity=0.353 Sum_probs=123.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|+++.|+|+|+|||||.+|+.|++.|...|+++.+..........+..++.+++++||+|.|+.|+++.+|+..+..
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~--- 77 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLLESYDELLLGTPTWGAGELPDDWYDFIEELEP--- 77 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhhhccCCEEEEEeCCCCCCcCCccHHHHHHHhcc---
Confidence 68999999999999999999999999999988855555555433445899999999999999999999999999865
Q ss_pred CccccCCceEEEEecCCCCchh-HHHHHHHHHHHHHhCC--Ceeeccceee--cCCCCCCcccchhhHHHHHHHH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLG--ATAVVERGLG--DDQHPSGYEGALDPWMRSLWRR 155 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~-f~~~~k~l~~~L~~lG--a~~~~~~~~~--D~~~~~g~~~~~~~W~~~l~~~ 155 (399)
..+++++||+||+||+.|.. ||.++..+.+.++..| +....+.... |...++..+..++.|.++++..
T Consensus 78 --~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 78 --IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred --cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHHhh
Confidence 25899999999999999987 9999999999999999 6666666555 4454455799999999988753
No 27
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.86 E-value=5.2e-21 Score=184.97 Aligned_cols=143 Identities=29% Similarity=0.443 Sum_probs=125.8
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhc----
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK---- 83 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~---- 83 (399)
+-.|+|+|+||+|+++|+.+++.+.+....+.+++++ ++..+++ ...++|++.|+.+|+|| +..|++||++.
T Consensus 48 ~~~vfy~s~~GtA~~~A~~~~e~~~sld~~~~llnl~-y~~~d~p-en~~~~lv~~~~~~~~~--~d~~~~~L~Esa~DF 123 (601)
T KOG1160|consen 48 KSKVFYSSLTGTAKKAAKSVHEKLKSLDELPKLLNLD-YSDFDVP-ENALYFLVLPSYDIDPP--LDYFLQWLEESANDF 123 (601)
T ss_pred cceEEEEeccchHHHHHHHHHHHHHhcccchhhcCCC-CCccCCC-cceEEEEEecccCCCCc--HHHHHHHHHhhhhcc
Confidence 3489999999999999999999999888889999999 8888888 56677777776689988 88999999865
Q ss_pred cCCccccCCceEEEEecCCCCc-hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhh
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y-~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (399)
++++.+|+|++|||||+||+.| ++||..++.+|.++..||+.|++|+|++|.++. .+++|+..+.+.|+.-
T Consensus 124 Rv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~~-----~id~W~~~~~~~Lk~g 195 (601)
T KOG1160|consen 124 RVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDSA-----KIDEWTSLVAETLKDG 195 (601)
T ss_pred ccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCccccccc-----cHHHHHHHHHHHHcCC
Confidence 4677789999999999999987 599999999999999999999999999998843 5669999999999753
No 28
>PRK09267 flavodoxin FldA; Validated
Probab=99.85 E-value=2.2e-20 Score=166.34 Aligned_cols=117 Identities=26% Similarity=0.283 Sum_probs=103.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
||+++|+|+|+||||+++|+.|++.+.. ..++++++.+.+..++..++.|||++|||+.|.+|+.+..|++.+...
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~--~~~~~~~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~-- 76 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK--DVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEI-- 76 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcC--
Confidence 4789999999999999999999999963 367899998887778889999999999999999999999999887433
Q ss_pred CccccCCceEEEEecCCC-Cc-hhHHHHHHHHHHHHHhCCCeeecc
Q 015866 86 SKQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds-~y-~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.|+|+++++||+||+ .| .+||.+.+.+.+.|++.|++.+..
T Consensus 77 ---~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~ 119 (169)
T PRK09267 77 ---DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGH 119 (169)
T ss_pred ---CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECc
Confidence 478999999999987 47 589999999999999999887654
No 29
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.75 E-value=5.4e-18 Score=170.59 Aligned_cols=142 Identities=16% Similarity=0.100 Sum_probs=119.2
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHH--hcCCCcEEEeCCCCCcCCC----CCCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESE--RRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~--~~g~~~~v~~l~~~~~~~l----~~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
++++++|+|+|+|||||++|+.|++.+. +.|++++++++.+.+.+++ .+++.+||++|||+.|.+| .+..|++
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~~~~~~-~~~~~l~ 324 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTINRGILS-STAAILE 324 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcCccccH-HHHHHHH
Confidence 4688999999999999999999999998 6789999999998876654 4699999999999888886 5999999
Q ss_pred HHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 79 FLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 79 ~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
+|... .++|+.+++||+ |+|+|.+.+.+.++|+++|++.+.+...+...-.....+.+++|.+++.+.|
T Consensus 325 ~l~~~-----~~~~K~~a~FGs----ygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 325 EIKGL-----GFKNKKAAAFGS----YGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred Hhhcc-----CcCCCEEEEEec----CCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHhh
Confidence 98665 478999999996 9999999999999999999999987776654422224556678887776543
No 30
>PRK05568 flavodoxin; Provisional
Probab=99.74 E-value=1.8e-17 Score=143.13 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=107.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCc-hhHHHHHHHHHhcc
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP-DSMKVFWRFLLQKS 84 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p-~~~~~f~~~L~~~~ 84 (399)
|++++|+|+|+||||+++|+.|++.+.+.|++++++++.+.+..++.+++.|||++|||+.|.+| ..+..|++.+..
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~-- 78 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISS-- 78 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhh--
Confidence 46799999999999999999999999999999999999998887889999999999999888764 789999988743
Q ss_pred CCccccCCceEEEEecCCCCchhH-HHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHH
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKF-NFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f-~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l 152 (399)
.++++++++||+ |+|. ..+.+.+.+.|+++|++.+.+.......-+....+...+|..+|
T Consensus 79 ----~~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 79 ----LVKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNEGLIVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred ----hhCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 257999999997 3332 44678899999999999887644432221111234445555544
No 31
>PRK05569 flavodoxin; Provisional
Probab=99.74 E-value=2.3e-17 Score=142.34 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=99.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCc-hhHHHHHHHHHhcc
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP-DSMKVFWRFLLQKS 84 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p-~~~~~f~~~L~~~~ 84 (399)
|++++|+|+|.||||+++|+.|++.+.+.|.++++.++.+.+..++.+++.|||++|||+.|.+| +.+..|++.|...
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~- 79 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLT- 79 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhcc-
Confidence 46899999999999999999999999999999999999998888888999999999999887654 7899999998543
Q ss_pred CCccccCCceEEEEecCCCCchhH-HHHHHHHHHHHHhCCCeeecc
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKF-NFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f-~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.++|+++++||++ +|. +.+.+.+.+.|++.|++.+.+
T Consensus 80 ----~~~~K~v~~f~t~----g~~~~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 80 ----PNENKKCILFGSY----GWDNGEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred ----CcCCCEEEEEeCC----CCCCCcHHHHHHHHHHHCCCeEeee
Confidence 3689999999974 332 557788899999999988765
No 32
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.74 E-value=1.1e-17 Score=140.30 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=77.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCcccc
Q 015866 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l 90 (399)
|+|+|+||||+++ +++.|+++..+.+++.++.++ +++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~f-------v~~lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n-------- 63 (125)
T TIGR00333 1 IYFSSKTGNVQRF-------VEKLGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN-------- 63 (125)
T ss_pred CEEEcccccHHHH-------HHHcCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh--------
Confidence 7899999999999 344466676677776655455 6776666 9999999999999999988632
Q ss_pred CCceEEEEecCCCCc-hhHHHHHHHHHHHHHh
Q 015866 91 EGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLD 121 (399)
Q Consensus 91 ~~~~~avfGlGds~y-~~f~~~~k~l~~~L~~ 121 (399)
+.++|||+||++| ++||.+++.+.+.+..
T Consensus 64 --~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 --LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred --cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 6999999999999887
No 33
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.71 E-value=4.1e-17 Score=167.55 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=118.7
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhc--CCCcEEEeCCCCCcCCCC----CCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERR--GCPVVVRPVDDYDARCLP----EEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~--g~~~~v~~l~~~~~~~l~----~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
++++++|+|+|+|||||++|+.|++.+++. |++++++++++.+++++. +++.|||+||||++|.+| .+..|++
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~ 328 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLE 328 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccCCcchH-HHHHHHH
Confidence 567899999999999999999999999976 678899999998876653 589999999999888777 6999999
Q ss_pred HHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHH
Q 015866 79 FLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 79 ~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~ 157 (399)
.|... .++|+++++||+ |+|+|.+.+.+.++|+.+|++.+ +...+...-++...+.+.++.++|.+++.
T Consensus 329 ~l~~~-----~l~gK~~~vFGS----ygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 329 EITGL-----RFRNKRASAFGS----HGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred Hhhcc-----CcCCCEEEEEEC----CCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 98654 378999999996 89999999999999999999996 45555544222245666788888887775
No 34
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.61 E-value=3.6e-15 Score=127.11 Aligned_cols=125 Identities=14% Similarity=0.275 Sum_probs=91.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCC----CCCchhHHHHHHHHHh
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ----GDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~----G~~p~~~~~f~~~L~~ 82 (399)
+.+.|+|.|.||||+++|++|... ...+++.+. +.+...+.+++++||||+ |..|+.+.+|++.+.+
T Consensus 1 ~~~~I~Y~S~TGNt~~f~~kl~~~-------~~~i~i~~~--~~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n 71 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRFVQKLGLP-------ATRIPINER--ERLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN 71 (134)
T ss_pred CcEEEEEECCChhHHHHHHHhCCc-------ceEEecCCC--ccccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc
Confidence 357999999999999999988654 245666542 235567789999999999 6999999999877422
Q ss_pred ccCCccccCCceEEEEecCCCCc-hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHH
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y-~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~ 154 (399)
....++|||+||++| .+||.+++.+.+.+. ...++ ..+-.......+.+.+|..++|.
T Consensus 72 --------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l~---k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 72 --------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLLY---RFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred --------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeEE---EEecCCCHHHHHHHHHHHHHHHh
Confidence 346899999999999 589999999999876 22222 23322111135556778877764
No 35
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.57 E-value=1.3e-14 Score=125.84 Aligned_cols=114 Identities=17% Similarity=0.288 Sum_probs=83.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-c-CCCcEEEeCCCCCcCC---CCCCCeEEEEeecC-CCCCCch--------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESER-R-GCPVVVRPVDDYDARC---LPEEDTVIFVVSTT-GQGDTPD-------- 71 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~-~-g~~~~v~~l~~~~~~~---l~~~~~ii~~~sT~-g~G~~p~-------- 71 (399)
|+++.|+|+|.||||++++++|...+.+ + +..+..+++.++..++ +.....+|+++||| |.|.+|+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~p~vli~pTY~~gG~~~~~~~~~~vp 80 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETTDFFPETEPFVAFLPTYLEGGNGIDNGDVEILT 80 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccccccccCCCEEEEEeeecCCCCCcccCccccch
Confidence 3679999999999999999999977654 2 4555556655553222 45677899999999 8886554
Q ss_pred -hHHHHHHHHHhccCCccccCCceEEEEecCCCCch-hHHHHHHHHHHHHHhCCCeeeccc
Q 015866 72 -SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVER 130 (399)
Q Consensus 72 -~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~-~f~~~~k~l~~~L~~lGa~~~~~~ 130 (399)
...+|+.. . ..++..++|||+||++|+ .||.+|+.+++. ++...++..
T Consensus 81 ~~v~dFL~~---~-----~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~f 130 (154)
T PRK02551 81 TPLGDFIAY---H-----DNAKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLADF 130 (154)
T ss_pred HHHHHHHcc---h-----hhhhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEEe
Confidence 44444321 1 236789999999999997 899999999865 455555543
No 36
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.56 E-value=2.8e-14 Score=127.97 Aligned_cols=87 Identities=24% Similarity=0.272 Sum_probs=78.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
|+++|+|+|.||||+++|+.|++.|.. |+.++++++.+.+..++.+++.||||+||| .|.+++.+..|++....
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~-~G~~~~~~~~fl~~~~~---- 74 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIR-YGHFHSALYKFVKKHAT---- 74 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccc-cCCcCHHHHHHHHHHHH----
Confidence 579999999999999999999999988 999999999988767888999999999999 78888899999877532
Q ss_pred ccccCCceEEEEecC
Q 015866 87 KQWLEGVRYAVFGLG 101 (399)
Q Consensus 87 ~~~l~~~~~avfGlG 101 (399)
.|+++++++|++|
T Consensus 75 --~l~~K~v~~F~v~ 87 (177)
T PRK11104 75 --QLNQMPSAFFSVN 87 (177)
T ss_pred --HhCCCeEEEEEec
Confidence 4789999999988
No 37
>PRK06242 flavodoxin; Provisional
Probab=99.55 E-value=3e-14 Score=124.09 Aligned_cols=108 Identities=25% Similarity=0.221 Sum_probs=89.1
Q ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 7 NKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 7 ~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|+++|+|+|+ ||||+++|+.|++.+. ++++++.+....++.+++.|||++||| .|.+|+.++.|++.+..
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-----~~~~~i~~~~~~~~~~~d~ii~g~pvy-~~~~~~~~~~fl~~~~~--- 71 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-----AEVIDPGDVNPEDLSEYDLIGFGSGIY-FGKFHKSLLKLIEKLPP--- 71 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-----cEEecHHHCCcccHhHCCEEEEeCchh-cCCcCHHHHHHHHhhhh---
Confidence 5799999999 7999999999999883 577788776667788999999999999 57788889999988732
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccc
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~ 130 (399)
+.++++++||++....+ ...+.+.+.|+.+|++.+...
T Consensus 72 ----~~~k~~~~f~t~g~~~~---~~~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 72 ----VSGKKAFIFSTSGLPFL---KYHKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred ----hcCCeEEEEECCCCCcc---hHHHHHHHHHHHCCCEEEEEE
Confidence 47899999998654432 237899999999999987653
No 38
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.49 E-value=2.8e-13 Score=123.62 Aligned_cols=121 Identities=23% Similarity=0.191 Sum_probs=97.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhc-CCCcEEEeCCCCC--------------------cCCCCCCCeEEEEeecCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERR-GCPVVVRPVDDYD--------------------ARCLPEEDTVIFVVSTTG 65 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~-g~~~~v~~l~~~~--------------------~~~l~~~~~ii~~~sT~g 65 (399)
.+|+|+|+|+||||+++|+.+++.+++. |.+++++++.+.. ..++.+++.|||++|||
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty- 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR- 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-
Confidence 3699999999999999999999999875 9999999986532 24556899999999999
Q ss_pred CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 66 ~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.|.+++.++.|++++.... .+..+.||.+++|+.+....+-...+...+...|..+|+..+-.
T Consensus 80 ~g~~~~~lk~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 80 FGNMASQMRNFLDQTGGLW-ASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred ccCccHHHHHHHHhccccc-cccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 7888889999999986542 12358899999999865444555566777888888999987743
No 39
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.47 E-value=4.2e-13 Score=122.78 Aligned_cols=122 Identities=23% Similarity=0.209 Sum_probs=97.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-cCCCcEEEeCCCCC--------------------cCCCCCCCeEEEEeecC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYD--------------------ARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~-~g~~~~v~~l~~~~--------------------~~~l~~~~~ii~~~sT~ 64 (399)
|++|+|+|+|++|||+++|+.+++.+++ .|.+++++++.+.. .+++..++.|||++|||
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty 80 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTR 80 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEeccc
Confidence 3689999999999999999999999998 89999999885422 34567899999999999
Q ss_pred CCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 65 g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.|.+|..++.|++++..... ...+.++.+++|+.+.+..+-.....+.+...|..+|+..+-+
T Consensus 81 -~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 81 -FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred -CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 89999999999999854321 2358899999999854333334456667777778999987753
No 40
>PRK07116 flavodoxin; Provisional
Probab=99.33 E-value=1.2e-11 Score=109.20 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-----------------------------cCCCCCCCe
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-----------------------------ARCLPEEDT 56 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-----------------------------~~~l~~~~~ 56 (399)
||+++|+|.|.||||+++|+.|++.+....+ ++.....++ ..++..++.
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~--~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D~ 79 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADLF--EIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYDV 79 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCeE--EEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCCE
Confidence 6889999999999999999999999854322 222221111 124567999
Q ss_pred EEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEec-CCCCchhHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 57 ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
|||++|+| .|.+|+.+..|++.+ .+.++++++|++ |.+.+ +.+...+.+.+. ...+.+....+.
T Consensus 80 Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~---~~~~~~~~~~~~ 144 (160)
T PRK07116 80 IFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSYP---DANWKEGRLLNG 144 (160)
T ss_pred EEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHCC---cCccccCeeecC
Confidence 99999999 588888899998653 377999999997 65543 444555555543 333333333332
Q ss_pred CCCCCcccchhhHHHHH
Q 015866 136 QHPSGYEGALDPWMRSL 152 (399)
Q Consensus 136 ~~~~g~~~~~~~W~~~l 152 (399)
+ + ....++.|.+++
T Consensus 145 ~-~--~~~~i~~wl~~~ 158 (160)
T PRK07116 145 G-A--SKEEIKEWINKL 158 (160)
T ss_pred C-C--cHHHHHHHHHHc
Confidence 2 1 355799998764
No 41
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.28 E-value=1.7e-11 Score=120.34 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=101.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC----CCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC----LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~----l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.+|.|+|.|++|+|+.+|+.|++.|.+.|+.|.++++.+.+.++ +..++.+|+++||++.+.+| .+..++-.+..
T Consensus 247 ~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~~~~~p-~i~~~l~~v~~ 325 (388)
T COG0426 247 GKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTINGGAHP-PIQTALGYVLA 325 (388)
T ss_pred ceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcccCCCCc-hHHHHHHHHHh
Confidence 37999999999999999999999999999999999998877664 46889999999999666555 68999988876
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceee
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG 133 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~ 133 (399)
.+ .+++..+|||+ |+|-..+.+.+.++|+.+|.+...+..++
T Consensus 326 ~~-----~~~k~~~vfgS----~GW~g~av~~i~~~l~~~g~~~~~~~i~v 367 (388)
T COG0426 326 LA-----PKNKLAGVFGS----YGWSGEAVDLIEEKLKDLGFEFGFDGIEV 367 (388)
T ss_pred cc-----CcCceEEEEec----cCCCCcchHHHHHHHHhcCcEEeccceEE
Confidence 53 56788999996 99999999999999999999988774433
No 42
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.28 E-value=7.4e-11 Score=102.11 Aligned_cols=86 Identities=33% Similarity=0.436 Sum_probs=69.3
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
+|+|+|.||||+++|+.|++.|.+.+..+++.++.. +..++..+|.|||++|+| .|.+|..+.+|++.+.. .
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~-~~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~~------~ 72 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEE-DEPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNKD------N 72 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhh-cccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHHH------H
Confidence 589999999999999999999987654444444321 345788999999999999 68888899999988743 3
Q ss_pred cCCceEEEEecCCC
Q 015866 90 LEGVRYAVFGLGDS 103 (399)
Q Consensus 90 l~~~~~avfGlGds 103 (399)
++++++++|.+|-.
T Consensus 73 l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 73 LKNKKVALFSVGGS 86 (143)
T ss_pred HcCCcEEEEEEeCC
Confidence 78999999998643
No 43
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.24 E-value=5.9e-11 Score=104.34 Aligned_cols=96 Identities=26% Similarity=0.371 Sum_probs=76.3
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
+|+|.|.||||+++|+.|++.|.. ..++++++.... +.++|+|++|+++| .|.+++.+++|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~----~~~~~~~~~~~~-~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l--------- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA----KDIVSVEEPPED-LEDYDLIFLGFWID-KGTPDKDMKEFLKKL--------- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC----ceeEeccccccC-CCCCCEEEEEcCcc-CCCCCHHHHHHHHHc---------
Confidence 589999999999999999999863 577888887543 88999999999999 789999999998764
Q ss_pred cCCceEEEEec-CCC-CchhHHHHHHHHHHHHHh
Q 015866 90 LEGVRYAVFGL-GDS-GYQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 90 l~~~~~avfGl-Gds-~y~~f~~~~k~l~~~L~~ 121 (399)
+|+++++||. |-- .=.++..+.+.+...+.+
T Consensus 66 -~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 -KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred -cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 6789999995 311 112466666777666665
No 44
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.20 E-value=1.2e-10 Score=99.65 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=88.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
|+++|+|+|.+|+|+++|++|+..|++.|++|++.|+.....-++.+++.||+++|.| .|..-....+|++.-..
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~k~~e---- 75 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIR-YGHFHEAVQSFVKKHAE---- 75 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchh-hhhhHHHHHHHHHHHHH----
Confidence 6899999999999999999999999999999999999987655788999999999999 89999999999887544
Q ss_pred ccccCCceEEEEecCCCCchhH---HHHHHHHHHHHHhCCC
Q 015866 87 KQWLEGVRYAVFGLGDSGYQKF---NFVAKKLDNRLLDLGA 124 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~y~~f---~~~~k~l~~~L~~lGa 124 (399)
.|.++..|+|.++-+ |..+ ..+-..+++.|.+--.
T Consensus 76 --~L~~kP~A~f~vnl~-a~k~k~~~e~~~yv~kfl~~~~W 113 (175)
T COG4635 76 --ALSTKPSAFFSVNLT-ARKEKRTPETNSYVRKFLMKSPW 113 (175)
T ss_pred --HHhcCCceEEEeehh-hcccccCchHHHHHHHHHhcCCC
Confidence 478889999987632 2222 3344456666655433
No 45
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=99.19 E-value=6.3e-11 Score=98.89 Aligned_cols=95 Identities=22% Similarity=0.404 Sum_probs=65.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCC----CchhHHHHHHHHHhccCC
Q 015866 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD----TPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~----~p~~~~~f~~~L~~~~~~ 86 (399)
|+|.|.||||++++++|...+. ..-+.+...+ .++.-.+..|++++|||.|. .|+...+|++.-.+
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~-----~~~i~~~~~~-~~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N---- 70 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAP-----AIRIPIREIS-PDLEVDEPFVLITPTYGFGENDGGVPKQVIRFLENPDN---- 70 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--S-----EEEE-SSCTT-STS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHH----
T ss_pred CEEECCCcCHHHHHHHHcccch-----hccccccccc-ccccCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHHH----
Confidence 7999999999999999977543 2222333222 23445667999999999999 99999999985433
Q ss_pred ccccCCceEEEEecCCCCch-hHHHHHHHHHHHH
Q 015866 87 KQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRL 119 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~y~-~f~~~~k~l~~~L 119 (399)
+..-.+|+|+||++|+ .||.+++.+.+.+
T Consensus 71 ----~~~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 71 ----RKLLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp ----GGGEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred ----HhhheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 3567899999999997 7999999998764
No 46
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=99.15 E-value=3.9e-10 Score=94.11 Aligned_cols=128 Identities=16% Similarity=0.304 Sum_probs=90.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCC----CCchhHHHHHHHHHh
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG----DTPDSMKVFWRFLLQ 82 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G----~~p~~~~~f~~~L~~ 82 (399)
+.+.|+|.|.||||.++++++. +.+ .++-.... .+.+.-.+..|++++|||.| ..|+...+|+..
T Consensus 1 ~~~~v~f~S~SgNt~RFv~kL~--~~~----~~I~~~~~--~~~~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~--- 69 (141)
T COG1780 1 MMLLVYFSSLSGNTHRFVEKLG--LPA----VRIPLNRE--EDPIEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNN--- 69 (141)
T ss_pred CceEEEEEecCccHHHHHHHhC--CCc----eecccccc--cCCccCCCCeEEEeccccCCCccCccCHHHHHHhcc---
Confidence 3578999999999999999997 211 11111111 12245566899999999999 889988888742
Q ss_pred ccCCccccCCceEEEEecCCCCch-hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~-~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
...+.+..+|.|.|+++|+ .||.+|+.+.+. +|...++..-..-... .-..+++|...+|+..
T Consensus 70 -----~~Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k---~~vPlLy~FEL~GT~~---Dv~~v~~~v~~~~~~~ 133 (141)
T COG1780 70 -----EHNRALCRGVIASGNRNFGDNFALAGDVISAK---CGVPLLYRFELLGTAE---DVAAVRKGVTEFWKRA 133 (141)
T ss_pred -----ccchhheEEEEecCCccHHHHHHHHHHHHHHH---hCCCEEEEEeccCCHH---HHHHHHHHHHHHHHhC
Confidence 1246788999999999997 799999999864 5666666554432222 2456778888888754
No 47
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.95 E-value=2.5e-09 Score=93.14 Aligned_cols=119 Identities=26% Similarity=0.274 Sum_probs=95.3
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCC---------------------cCCCCCCCeEEEEeec
Q 015866 7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYD---------------------ARCLPEEDTVIFVVST 63 (399)
Q Consensus 7 ~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~---------------------~~~l~~~~~ii~~~sT 63 (399)
|+|+|++||.. |||+.+|+.+++.+.+.|++++++++.++. .+.+...|.+||++|+
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~ 80 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV 80 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE
Confidence 68999999986 999999999999999999999999999861 1124578999999999
Q ss_pred CCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 64 TGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 64 ~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
| .|.+|..++.|++++... ....+++|.+++++.|-+.++ ...+...+...|..+|+..+-.
T Consensus 81 y-~~~~s~~lK~~lD~~~~~--~~~~~~~K~~~~i~~~g~~~g-~~~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 81 Y-NGSVSGQLKNFLDRLSCW--FRRALRGKPVAIIAVGGGRRG-GLRALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp B-TTBE-HHHHHHHHTHHHT--HTTTTTTSEEEEEEEESSSST-THHHHHHHHHHHHHTTBEEECC
T ss_pred E-cCcCChhhhHHHHHhccc--cccccCCCEEEEEEEecCCcH-HHHHHHHHHHHHHHCCCEEcCC
Confidence 9 888888999999999631 123689999999987744333 3456778888888999988754
No 48
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.82 E-value=1.5e-08 Score=89.01 Aligned_cols=123 Identities=24% Similarity=0.372 Sum_probs=73.7
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC---CCCCc-----------------------------CCCCCCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPV---DDYDA-----------------------------RCLPEED 55 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l---~~~~~-----------------------------~~l~~~~ 55 (399)
|++|+|-|.||||+++|+.|++.+. ++++.+ +.|.. .++.+||
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~g-----adi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD 75 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTG-----ADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYD 75 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT------EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-S
T ss_pred CEEEEEECCCchHHHHHHHHHHHHC-----CCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCC
Confidence 5899999999999999999998753 233322 11111 1356899
Q ss_pred eEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEec-CCCCchhHHHHHHHHHHHHHhCCCeeeccceeec
Q 015866 56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD 134 (399)
Q Consensus 56 ~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D 134 (399)
.|++|+|++ .|.+|..+..|++.. .++|++++.|.+ |.+. +..+.+.+.+.+. +++ +.+.....
T Consensus 76 ~I~lG~PvW-~~~~~~pv~tFL~~~--------~~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~-i~~g~~~~ 140 (156)
T PF12682_consen 76 TIFLGTPVW-WGTPPPPVRTFLEQY--------DFSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GAT-ILEGLAIN 140 (156)
T ss_dssp EEEEEEEEE-TTEE-CHHHHHHHCT--------TTTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSE-E---EE--
T ss_pred EEEEechHH-cCCCCHHHHHHHHhc--------CCCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCE-eecCeEEe
Confidence 999999999 889988899998653 478999999985 3333 3445555554443 344 33433332
Q ss_pred CCCCCCcccchhhHHHHH
Q 015866 135 DQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 135 ~~~~~g~~~~~~~W~~~l 152 (399)
.+.- ....+..|.++|
T Consensus 141 ~~~~--~~~~i~~Wl~~i 156 (156)
T PF12682_consen 141 RGSV--SEEEIKEWLKKI 156 (156)
T ss_dssp -S-----HHHHHHHHHHT
T ss_pred CCCc--CHHHHHHHHHhC
Confidence 2211 367899998764
No 49
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.67 E-value=3.7e-07 Score=82.90 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=93.7
Q ss_pred CeEEEEEECC--CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-----------------CCCCCeEEEEeecCCCC
Q 015866 7 NKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDARC-----------------LPEEDTVIFVVSTTGQG 67 (399)
Q Consensus 7 ~~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-----------------l~~~~~ii~~~sT~g~G 67 (399)
|+|+++.||- .++|.++++.+.+.+.+.|++++++++.+++..+ +...|.+||++|.| +|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~ 79 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KA 79 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CC
Confidence 5899999998 4899999999999999999999999988765422 24679999999999 89
Q ss_pred CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 68 ~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
..|.-++.|++|+.. ..+.|+.+++++.| ...++.-..--.+...|..+||..+-.
T Consensus 80 s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~~~ 135 (191)
T PRK10569 80 SFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEILH 135 (191)
T ss_pred CCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeecCc
Confidence 999999999999832 35899999999988 444444444456777888999987643
No 50
>PRK06934 flavodoxin; Provisional
Probab=98.66 E-value=1.5e-07 Score=86.79 Aligned_cols=133 Identities=20% Similarity=0.226 Sum_probs=85.4
Q ss_pred ccCCeEEEEEECCC------------------------chHHHHHHHHHHHHHhcCCCcEEEeCCCCC------------
Q 015866 4 EKRNKLLILYASQT------------------------GNALDAAERIGRESERRGCPVVVRPVDDYD------------ 47 (399)
Q Consensus 4 ~~~~~v~IlY~S~t------------------------G~te~~A~~l~~~l~~~g~~~~v~~l~~~~------------ 47 (399)
....+++|+|.|.+ |||+++|+.|++.+..-=++++ ..+.|.
T Consensus 33 ~~~~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~gaDl~eI~--~~~~Y~~~yd~~~~~a~~ 110 (221)
T PRK06934 33 RNARRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGGDLFRIE--TVKPYPRQHDPLLKYAEQ 110 (221)
T ss_pred ccCCceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEE--EccccCCCCchhhhHHHH
Confidence 34678999999998 8999999999988742111222 222111
Q ss_pred -------c------CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEec-CCCCchhHHHHHH
Q 015866 48 -------A------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAK 113 (399)
Q Consensus 48 -------~------~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~k 113 (399)
+ .++..||.|+|+.|.| .|.+|.-++.|++.. .++|++++.|.. |-+. +....+
T Consensus 111 E~~~~~~P~L~~~~~dl~~YD~I~IG~PIW-wg~~P~~V~tFLe~~--------d~~GK~I~pF~T~ggsg---~g~s~~ 178 (221)
T PRK06934 111 EVKEGGRPEMREKIQNLADYDQIFIGYPIW-WYKMPMVMYSFFEQH--------DFSGKTLIPFTTHGGSR---FSDSLR 178 (221)
T ss_pred hhhcCCCHHHHHHHHhHHhCCEEEEEcchh-hccccHHHHHHHHhc--------CCCCCEEEEEEecCCCC---ccchHH
Confidence 1 2456899999999999 889998899998664 478999999985 3333 333444
Q ss_pred HHHHHHHhCCCeeecccee--ecCCCCCCcccchhhHHHHH
Q 015866 114 KLDNRLLDLGATAVVERGL--GDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 114 ~l~~~L~~lGa~~~~~~~~--~D~~~~~g~~~~~~~W~~~l 152 (399)
.+.+.+. +++.+.+... ++...+...++.+..|.+++
T Consensus 179 ~i~~l~~--~a~~v~~Gl~i~~~~~~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 179 EIKRLQP--NAQLVTQGLAISRNDVTDDDTPKEIINWLNTL 217 (221)
T ss_pred HHHHHcC--CcceeccceeeecCcccccchHHHHHHHHHHc
Confidence 4444332 3423333333 22211111367899998764
No 51
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=98.60 E-value=1.2e-06 Score=78.13 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=90.9
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-----------------CCCCCeEEEEeecCCCCC
Q 015866 8 KLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDARC-----------------LPEEDTVIFVVSTTGQGD 68 (399)
Q Consensus 8 ~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-----------------l~~~~~ii~~~sT~g~G~ 68 (399)
+|+++.||- .|+|.++++.+.+.+.+.|.+++++++.++...+ +...|.+||++|.| +|.
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~s 79 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KAS 79 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCC
Confidence 588999995 7899999999999999889889999887765422 12569999999999 888
Q ss_pred CchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccc
Q 015866 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (399)
Q Consensus 69 ~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~ 130 (399)
+|...+.|++|+.. ..+.+|.+++++.| ..++++...-..+...|..+|+..+.+.
T Consensus 80 ip~~LK~~iD~~~~-----~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~~ 135 (171)
T TIGR03567 80 YSGVLKALLDLLPQ-----RALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILPG 135 (171)
T ss_pred CCHHHHHHHHhCCh-----hhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccce
Confidence 89899999999842 25889999998887 3455444433457888999999755443
No 52
>PRK00170 azoreductase; Reviewed
Probab=98.45 E-value=4.1e-06 Score=76.34 Aligned_cols=147 Identities=11% Similarity=0.059 Sum_probs=100.8
Q ss_pred CCeEEEEEECC--C-chHHHHHHHHHHHHHhc--CCCcEEEeCCCCCcC-------------------------------
Q 015866 6 RNKLLILYASQ--T-GNALDAAERIGRESERR--GCPVVVRPVDDYDAR------------------------------- 49 (399)
Q Consensus 6 ~~~v~IlY~S~--t-G~te~~A~~l~~~l~~~--g~~~~v~~l~~~~~~------------------------------- 49 (399)
||+|+|++||- . |+|.++|+.+.+.+++. |.+++++++.+.+..
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 88999999999999988 889999998654321
Q ss_pred --CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc--------CCccccCCceEEEEec-CCC-CchhHHHHHHHHHH
Q 015866 50 --CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGL-GDS-GYQKFNFVAKKLDN 117 (399)
Q Consensus 50 --~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~--------~~~~~l~~~~~avfGl-Gds-~y~~f~~~~k~l~~ 117 (399)
.+...|.|||++|.| ++..|.-++.|++++.... .+...++++++.++.. |.. .......+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 134579999999999 7888889999999985321 1123578999888885 432 11122445666777
Q ss_pred HHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 118 RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 118 ~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
.|.-+|++.+.... +..... ..+.-++|.++....+
T Consensus 160 ~~~~~G~~~~~~~~-~~g~~~--~~~~~~~~~~~a~~~~ 195 (201)
T PRK00170 160 FLGFIGITDVEFVF-AEGHNY--GPEKAAKIISAAKAAA 195 (201)
T ss_pred HHHhcCCCceEEEE-EecccC--CchHHHHHHHHHHHHH
Confidence 88889988654333 222111 2333456666555444
No 53
>PRK01355 azoreductase; Reviewed
Probab=98.29 E-value=2.1e-05 Score=71.83 Aligned_cols=152 Identities=11% Similarity=0.134 Sum_probs=102.9
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhc--CCCcEEEeCCCCCcC----------------C-------CCCCCe
Q 015866 6 RNKLLILYASQT----GNALDAAERIGRESERR--GCPVVVRPVDDYDAR----------------C-------LPEEDT 56 (399)
Q Consensus 6 ~~~v~IlY~S~t----G~te~~A~~l~~~l~~~--g~~~~v~~l~~~~~~----------------~-------l~~~~~ 56 (399)
|++|+|+.||-. |+|..+|+.+.+.+++. |.+++++++.+.... + +...|.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 89999999999999874 578888888765431 1 246799
Q ss_pred EEEEeecCCCCCCchhHHHHHHHHHhccC-----------CccccCCceEEEEecCCCCch--hHHHHHHHHHHHHHhCC
Q 015866 57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSL-----------SKQWLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLG 123 (399)
Q Consensus 57 ii~~~sT~g~G~~p~~~~~f~~~L~~~~~-----------~~~~l~~~~~avfGlGds~y~--~f~~~~k~l~~~L~~lG 123 (399)
|||++|.| ++.+|..++.|++++..... +...+.++++.++........ .+......+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 88889999999999864310 112477888877664322111 23456677888888899
Q ss_pred CeeeccceeecCCCCCCcccchhhHHHHHHHHHHh
Q 015866 124 ATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (399)
Q Consensus 124 a~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~ 158 (399)
++.+............-.-+....|.+.-.+.+.+
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 98765444433222100012367777665555443
No 54
>PRK09739 hypothetical protein; Provisional
Probab=98.29 E-value=1.3e-05 Score=73.14 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=98.6
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc---------------------------CCCCCCCe
Q 015866 6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA---------------------------RCLPEEDT 56 (399)
Q Consensus 6 ~~~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~---------------------------~~l~~~~~ 56 (399)
+|+|+|++||- .|+|..+++.+.+.+++.|.+++++|+.+... +.+...|.
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 68999999997 57889999999999999999999888865321 11356799
Q ss_pred EEEEeecCCCCCCchhHHHHHHHHHhccC---CccccCCceEEEEec-CCCCchhH-----H-HHHHHHH-HHHHhCCCe
Q 015866 57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSL---SKQWLEGVRYAVFGL-GDSGYQKF-----N-FVAKKLD-NRLLDLGAT 125 (399)
Q Consensus 57 ii~~~sT~g~G~~p~~~~~f~~~L~~~~~---~~~~l~~~~~avfGl-Gds~y~~f-----~-~~~k~l~-~~L~~lGa~ 125 (399)
|||++|.| ++.+|.-.+.|++++..... ....+.++++.++.+ |. .+.+| . .+...+. ..+.-+|.+
T Consensus 83 iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~-~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 160 (199)
T PRK09739 83 LVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGG-SKESFVKRGWEKNMSDYLNVGMASYLGIE 160 (199)
T ss_pred EEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCC-ChHHhcccccccHHHHHHHhhhhhcCCcc
Confidence 99999999 78888899999999753211 112477888777764 43 33332 1 1333444 445557876
Q ss_pred eeccceeecCCCC---CCcccchhhHHHHHHHHH
Q 015866 126 AVVERGLGDDQHP---SGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 126 ~~~~~~~~D~~~~---~g~~~~~~~W~~~l~~~l 156 (399)
.+-....+..... ....+..+.|.+++....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 194 (199)
T PRK09739 161 DSDVTFLYNTLVFDGEELHASHYQSLLSQAREMV 194 (199)
T ss_pred ccceEEEecccccccccCCHHHHHHHHHHHHHHH
Confidence 5432222222100 113556778887766554
No 55
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=98.27 E-value=1.6e-05 Score=71.01 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=87.0
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHH-hcCCCcEEEeCCCCCc-------------------CCCCCCCeEEEEeecCC
Q 015866 8 KLLILYASQ--TGNALDAAERIGRESE-RRGCPVVVRPVDDYDA-------------------RCLPEEDTVIFVVSTTG 65 (399)
Q Consensus 8 ~v~IlY~S~--tG~te~~A~~l~~~l~-~~g~~~~v~~l~~~~~-------------------~~l~~~~~ii~~~sT~g 65 (399)
+|+++.||. .|+|..+|+.+.+.+. +.|++++++++.++++ +.+...|.|||++|.|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY- 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-
Confidence 589999998 5999999999999876 5688898888866521 0134678999999999
Q ss_pred CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 66 ~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
+|.+|...+.|++|+.. ..+.||.+++++.|....+ ...+...+...|..+|+..+-.
T Consensus 80 ~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~~~ 137 (174)
T TIGR03566 80 RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTLPT 137 (174)
T ss_pred cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccccc
Confidence 88999999999999843 2588999999998644322 2223445667777888776543
No 56
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=98.25 E-value=1.2e-05 Score=73.38 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=107.7
Q ss_pred CeEEEEEECCCc---hHHHHHHHHHHHHHhcC-CCcEEEeCCCC-------------------C--------cCCCCCCC
Q 015866 7 NKLLILYASQTG---NALDAAERIGRESERRG-CPVVVRPVDDY-------------------D--------ARCLPEED 55 (399)
Q Consensus 7 ~~v~IlY~S~tG---~te~~A~~l~~~l~~~g-~~~~v~~l~~~-------------------~--------~~~l~~~~ 55 (399)
|+|+|+++|-.+ ++..+++.+.+.+++.| .++++.|+.+. . .+.+...|
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD 80 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWAD 80 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcC
Confidence 689999999987 58999999999999999 88999999874 0 03345689
Q ss_pred eEEEEeecCCCCCCchhHHHHHHHHHhccC----------CccccCCceEEEEe-cCCCCc--h-------hHHHHHHHH
Q 015866 56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSL----------SKQWLEGVRYAVFG-LGDSGY--Q-------KFNFVAKKL 115 (399)
Q Consensus 56 ~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~----------~~~~l~~~~~avfG-lGds~y--~-------~f~~~~k~l 115 (399)
.|||++|.| ++.+|.-++.|++.+..... ....|+|+++.++- +|...+ . .+..+...+
T Consensus 81 ~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~ 159 (199)
T PF02525_consen 81 HIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYL 159 (199)
T ss_dssp EEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHH
T ss_pred cceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHH
Confidence 999999999 77888899999999844322 13568899877776 554422 1 345566668
Q ss_pred HHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 116 ~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
...+.-+|++.+-.....+..... .++..++|++++-+.|
T Consensus 160 ~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 160 RGILKFCGIKDVESFSFEGVDNPD-REEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHTTEEEEEEEEEESTTTCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeeEEEEeCCCCCC-hHHHHHHHHHHHHhhC
Confidence 888999999998665554443322 3677888888876654
No 57
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=98.22 E-value=1.3e-05 Score=73.79 Aligned_cols=117 Identities=23% Similarity=0.128 Sum_probs=86.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------------------C--------CCCCCeEEEEe
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR------------------C--------LPEEDTVIFVV 61 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------------------~--------l~~~~~ii~~~ 61 (399)
.|.+.|-| +|||+.+++.+++.+++.|.+++++.+.+.++. | +.++|.|||++
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs 83 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS 83 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC
Confidence 34555556 799999999999999999999999998875311 1 33479999999
Q ss_pred ecCCCCCCchhHHHHHHH-HHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 62 STTGQGDTPDSMKVFWRF-LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 62 sT~g~G~~p~~~~~f~~~-L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
||| .|..+..++.|++. +.....+ ..++++..++|..+-+.-+........+...+...|...+
T Consensus 84 Pvy-~g~vsa~~K~fiDR~~~~~~~~-~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 84 PVY-FGNVSAQMKAFIDRSTGPLWAP-GALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred Cee-cCCchHHHHHHHhhcchhhccc-chhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEe
Confidence 999 89999999999999 4333222 4688988888887654433222455666667777776655
No 58
>PRK13556 azoreductase; Provisional
Probab=98.04 E-value=0.00014 Score=66.91 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=99.8
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhc--CCCcEEEeCCCCCc--------------C----------------
Q 015866 6 RNKLLILYASQT----GNALDAAERIGRESERR--GCPVVVRPVDDYDA--------------R---------------- 49 (399)
Q Consensus 6 ~~~v~IlY~S~t----G~te~~A~~l~~~l~~~--g~~~~v~~l~~~~~--------------~---------------- 49 (399)
|++|+|+.+|-. ++|..+++.+.+.+.+. |.+|++.|+.+.+. .
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 78999999999999875 78898888864211 0
Q ss_pred -----CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC--------CccccCCceEEEEecCCCCc-----hhHHHH
Q 015866 50 -----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGY-----QKFNFV 111 (399)
Q Consensus 50 -----~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~--------~~~~l~~~~~avfGlGds~y-----~~f~~~ 111 (399)
.+...|.|||++|-| ++.+|.-.+.+++++..... +...+.++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 123568999999999 78889899999999976421 12358899999987532234 233445
Q ss_pred HHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 112 ~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
...+...|.-+|++.+ +........ . ..+..+.+.++....+
T Consensus 160 ~~~l~~il~~~G~~~~-~~v~~~~~~-~-~~~~~~~~~~~a~~~~ 201 (208)
T PRK13556 160 VKYVASMMGFFGVTNM-ETVVIEGHN-Q-FPDKAEEIITAGLEEA 201 (208)
T ss_pred HHHHHHHHHhcCCCce-eEEEEehhh-c-ChhHHHHHHHHHHHHH
Confidence 6678888888998875 344443221 1 2333445544443333
No 59
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=97.73 E-value=0.00046 Score=63.85 Aligned_cols=120 Identities=14% Similarity=0.028 Sum_probs=89.9
Q ss_pred CCeEEEEEECCCc--hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC---------------CCCCCeEEEEeecCCCCC
Q 015866 6 RNKLLILYASQTG--NALDAAERIGRESERRGCPVVVRPVDDYDARC---------------LPEEDTVIFVVSTTGQGD 68 (399)
Q Consensus 6 ~~~v~IlY~S~tG--~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~---------------l~~~~~ii~~~sT~g~G~ 68 (399)
+++|+++.||.-- ++..+|+.+.+.+...|++++++++.+++.-+ +...+.+||++|-| +|.
T Consensus 26 ~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n~s 104 (219)
T TIGR02690 26 IPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-HGA 104 (219)
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-ccC
Confidence 5789999998743 45789999999998789999999887654211 13578999999999 788
Q ss_pred CchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 69 ~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.|...+..++|+....-+...+.+|.++|+|.+ .... .-.+...|...|..+|+..+-
T Consensus 105 ipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~~-g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 105 ITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGSQ-SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred cCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcHh-HHHHHHHHHHHHHHCCCcccc
Confidence 888899999999653111125889999999853 1111 234677888888899987763
No 60
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=97.43 E-value=0.0081 Score=54.12 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=97.1
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC----------CCCCCCeEEEEeecCCCCCCchhHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------CLPEEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~----------~l~~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
.+++++|++++-.+.. ..+++...++.+.+.++++.|+...-+. .|...|.|||..|.| +..+|.-++
T Consensus 4 ~~~kiLiI~aHP~~~~-S~~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa~LK 81 (184)
T PRK04930 4 QPPKVLLLYAHPESQD-SVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPALLK 81 (184)
T ss_pred CCCEEEEEECCCCccc-CHHHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcHHHH
Confidence 4689999999998753 3344444444444567888888664321 246789999999999 777788899
Q ss_pred HHHHHHHhccC----CccccCCceEEEEe-cCCCC--chh--HH-----HHHHHHHHHHHhCCCeeeccceeecCCCCCC
Q 015866 75 VFWRFLLQKSL----SKQWLEGVRYAVFG-LGDSG--YQK--FN-----FVAKKLDNRLLDLGATAVVERGLGDDQHPSG 140 (399)
Q Consensus 75 ~f~~~L~~~~~----~~~~l~~~~~avfG-lGds~--y~~--f~-----~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g 140 (399)
.+++....... ....++|+++.+.- .|... |.. ++ ..-.-+...+.-+|.+.+-+....+....
T Consensus 82 ~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~-- 159 (184)
T PRK04930 82 EWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARRQ-- 159 (184)
T ss_pred HHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCC--
Confidence 99988765422 12258899887764 45432 321 11 12233344555679888766666554422
Q ss_pred cccchhhHHHHHHHHHHhh
Q 015866 141 YEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 141 ~~~~~~~W~~~l~~~l~~~ 159 (399)
.++..++|.++..+.|...
T Consensus 160 ~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 160 SPEELASHARAYGDWLANP 178 (184)
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 3566788887777776543
No 61
>PRK13555 azoreductase; Provisional
Probab=97.26 E-value=0.0099 Score=54.69 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=86.1
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhcC--CCcEEEeCCCCCc---------------C---------------
Q 015866 6 RNKLLILYASQT----GNALDAAERIGRESERRG--CPVVVRPVDDYDA---------------R--------------- 49 (399)
Q Consensus 6 ~~~v~IlY~S~t----G~te~~A~~l~~~l~~~g--~~~~v~~l~~~~~---------------~--------------- 49 (399)
|++++++++|-. -.+..+|+.+.+.+++.+ .+|+..|+.+.++ .
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 568999999943 568889999999998775 6788888754211 0
Q ss_pred -----CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc--------CCccccCCceEEEEecCCCCchh-----HHHH
Q 015866 50 -----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSGYQK-----FNFV 111 (399)
Q Consensus 50 -----~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~--------~~~~~l~~~~~avfGlGds~y~~-----f~~~ 111 (399)
.+...|.|||++|-| ++.+|.-.+.|++++.... .+...++|++..|++.....|.. ....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 123568999999999 7788888999999986531 12245889999999862233532 1224
Q ss_pred HHHHHHHHHhCCCeee
Q 015866 112 AKKLDNRLLDLGATAV 127 (399)
Q Consensus 112 ~k~l~~~L~~lGa~~~ 127 (399)
...+...|.-+|.+.+
T Consensus 160 ~~yl~~il~~~Gi~~v 175 (208)
T PRK13555 160 VNYVTTVLGFWGITNP 175 (208)
T ss_pred HHHHHHHHHhcCCCce
Confidence 4677778888898653
No 62
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=97.14 E-value=0.0036 Score=54.43 Aligned_cols=127 Identities=23% Similarity=0.206 Sum_probs=87.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC---------------------CcCCCCCCCeEEEEeecC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---------------------DARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~---------------------~~~~l~~~~~ii~~~sT~ 64 (399)
+.+|.|+|-|.+|.-..+|+.+.+.....|-+++++.+.+. .++.|.++|..+|+.||-
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTR 80 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTR 80 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccccc
Confidence 35899999999999999999999999887768888776542 122356899999999998
Q ss_pred CCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 65 g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
.|.+|..++.||+.--.. -.+..|.|+..++|=++-+.=+-=-..+...-..|...|.- ++|.|.-+-
T Consensus 81 -fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmi-fVPlGYkn~ 148 (203)
T KOG3135|consen 81 -FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMI-FVPLGYKNF 148 (203)
T ss_pred -ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceE-EEecccchh
Confidence 899999999999873111 12346899999999754432111111222223345555644 457776543
No 63
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=96.59 E-value=0.024 Score=51.09 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=82.6
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhcCCC-cEEEeCC----CCCcC--C-----------CCCCCeEEEEeecCCC
Q 015866 7 NKLLILYASQT--GNALDAAERIGRESERRGCP-VVVRPVD----DYDAR--C-----------LPEEDTVIFVVSTTGQ 66 (399)
Q Consensus 7 ~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~-~~v~~l~----~~~~~--~-----------l~~~~~ii~~~sT~g~ 66 (399)
|++++++||.. -.+..+|+.+.+.+...+.. +...+++ +.+.+ . +...|.+||+||-| +
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY-n 79 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY-N 79 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-C
Confidence 58999999975 45788999999999877633 2222221 11111 1 24679999999999 8
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
|..|.-.+..++||... .+.++.+++++.|-... +.-.+...+...|..+|+..+-.
T Consensus 80 ~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 80 GSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred CCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 88898999999998543 58899999998752222 22346677888888889887744
No 64
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=96.04 E-value=0.16 Score=45.51 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=81.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC----------CCCCCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------CLPEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~----------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
++|+++.-......+-+.|.+.+.+. ..|++.++.+..+. .|...|.|||..|-| +..+|.-.+.+++
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~-~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~wiD 79 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL-EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLWID 79 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc-CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHHHH
Confidence 89999998876556667777766643 36888887654321 246789999999999 7788888999998
Q ss_pred HHHhccC----CccccCCceE-EEEecCCC--Cch-----hHHHHHHHHHHHHHhCCCeeeccce
Q 015866 79 FLLQKSL----SKQWLEGVRY-AVFGLGDS--GYQ-----KFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 79 ~L~~~~~----~~~~l~~~~~-avfGlGds--~y~-----~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
..-.... ....|+|+++ .++..|.. .|. .+.....-+...+.-+|++.+-+..
T Consensus 80 ~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~ 144 (176)
T PRK00871 80 KVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFA 144 (176)
T ss_pred HHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEE
Confidence 8754321 1234889876 45556654 232 1223344555666778998776654
No 65
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=95.27 E-value=0.077 Score=51.29 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=33.7
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCC------CcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSA------AIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~------~~~Y~~GD~l~I~P~N 275 (399)
+|++++.+++.+ ..+++++.|..++. ...|+||+++.|.|.+
T Consensus 49 ~l~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g 96 (289)
T cd06201 49 ELVERKDYGAAV-QAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG 96 (289)
T ss_pred EEEeeeecCCCC-CCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC
Confidence 788888888755 66899999998742 4789999999998754
No 66
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=95.10 E-value=0.27 Score=44.56 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=95.5
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhcCCCcEEEeCC-----------C--CCc------CCCCCCCeEEEEeecCCC
Q 015866 7 NKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVD-----------D--YDA------RCLPEEDTVIFVVSTTGQ 66 (399)
Q Consensus 7 ~~v~IlY~S~t-G~te~~A~~l~~~l~~~g~~~~v~~l~-----------~--~~~------~~l~~~~~ii~~~sT~g~ 66 (399)
|+|+|+||--- .-+..+++.+.+.+.+.|+++...++. + ..+ +.+...|.|||.-|.| .
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 68999999986 666667777777777777665433322 1 111 1245789999999999 8
Q ss_pred CCCchhHHHHHHHHHhccC----Cc----cccCCceEEEEecCCCCchhHHHH---------HHHHHHHHHhCCCeeecc
Q 015866 67 GDTPDSMKVFWRFLLQKSL----SK----QWLEGVRYAVFGLGDSGYQKFNFV---------AKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~----~~----~~l~~~~~avfGlGds~y~~f~~~---------~k~l~~~L~~lGa~~~~~ 129 (399)
...|.-.+.+++..-.... .+ ..|.|+++.++.+-...-..|... ...+...+.-+|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 8888889999988754421 11 468999988888533221222221 122334556677666655
Q ss_pred ceeecCCCCCCcccchhhHHHHHHHHHHhh
Q 015866 130 RGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 130 ~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (399)
...+..... -++....|.+++-..+...
T Consensus 160 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVI--DDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccC--CHHHHHHHHHHHHHHHHhh
Confidence 555444432 4778889988887777543
No 67
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=94.12 E-value=0.026 Score=56.90 Aligned_cols=63 Identities=41% Similarity=0.571 Sum_probs=57.3
Q ss_pred EEecCCCCch------hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhh
Q 015866 97 VFGLGDSGYQ------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 97 vfGlGds~y~------~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (399)
|||+||+.|. .|++-.|.+..+|.+++|......+.|++++++|....+..|--.||+++...
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 6899999874 48889999999999999999999999999999999999999999999999643
No 68
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=92.29 E-value=0.17 Score=48.25 Aligned_cols=42 Identities=29% Similarity=0.623 Sum_probs=37.2
Q ss_pred eeeeeecCCCCCCceeEEEEEEecC-CCcccccCCEEEEccCC
Q 015866 234 MIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 234 v~~~~~Lt~~~~~~~v~hi~l~l~~-~~~~Y~~GD~l~I~P~N 275 (399)
++.++++|++++.+++++++|+.++ ....|+||.++.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 4568899999999999999999985 67899999999999764
No 69
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=90.36 E-value=0.45 Score=47.64 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=40.7
Q ss_pred CCccee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccC
Q 015866 227 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (399)
Q Consensus 227 ~~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~ 274 (399)
..+++. +|+.|.+|+.++...+++||+|+.+ ..+.|.||.+++|.|+
T Consensus 87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~ 134 (367)
T PLN03115 87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPD 134 (367)
T ss_pred cCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcC
Confidence 344566 9999999999888889999999976 5789999999999985
No 70
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=86.47 E-value=3.6 Score=39.32 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC--------C-CCCCe-EEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDARC--------L-PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~--------l-~~~~~-ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
...+|++|++.+.+.|+++...+-.+...+- + ++.+. +|.++-..+ ...+....+|=+.|.+.- .
T Consensus 86 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l-~--- 160 (268)
T cd07371 86 DVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKAT-R--- 160 (268)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHH-H---
Confidence 5789999999999999988764433332111 1 23443 333332332 345666667777664320 0
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
-.+++++|+|+|+.+.
T Consensus 161 ~~~~rv~iIgSG~lsH 176 (268)
T cd07371 161 DAGKRVAVLGSGGLSH 176 (268)
T ss_pred HcCCcEEEEEecCccc
Confidence 1258999999998765
No 71
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=85.73 E-value=2.7 Score=32.61 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=40.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE--eCCCCCcCCCCCCCeEEEEeec
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVR--PVDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~--~l~~~~~~~l~~~~~ii~~~sT 63 (399)
++++++.++-.|++..++.+|.+.+.+.++.+.+. ++.++.. .+.++|+++.....
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 46899999999999999999999999989876553 4444433 34466754444433
No 72
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.65 E-value=12 Score=31.93 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=68.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHH-HhcCCCcEEEeCCC-CCcCCC----CCCCe-EEEEeecCCCCCCchhHHHHHHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRES-ERRGCPVVVRPVDD-YDARCL----PEEDT-VIFVVSTTGQGDTPDSMKVFWRF 79 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l-~~~g~~~~v~~l~~-~~~~~l----~~~~~-ii~~~sT~g~G~~p~~~~~f~~~ 79 (399)
++-.|+-++.-|..-.+...+...+ +..|++| +++-. ..++++ .+.+. +|.+|+.. +..-..++.+.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eV--i~LG~~vp~e~i~~~a~~~~~d~V~lS~~~--~~~~~~~~~~~~~ 77 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEV--INLGVMTSQEEFIDAAIETDADAILVSSLY--GHGEIDCRGLREK 77 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCcc--ccCHHHHHHHHHH
Confidence 4556888899998888887666554 6789765 45532 333443 23444 44444444 3445578888888
Q ss_pred HHhccCCccccCCceEEEEec---CCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 80 LLQKSLSKQWLEGVRYAVFGL---GDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 80 L~~~~~~~~~l~~~~~avfGl---Gds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
|++.. +.+.++.+=|. +++.| ....+.|+++|...+++.+.
T Consensus 78 L~~~~-----~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 78 CIEAG-----LGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred HHhcC-----CCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC
Confidence 87642 34566555553 23333 34557888999888887544
No 73
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=85.19 E-value=1.8 Score=44.12 Aligned_cols=49 Identities=24% Similarity=0.389 Sum_probs=41.3
Q ss_pred CCCccee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccC
Q 015866 226 NKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (399)
Q Consensus 226 ~~~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~ 274 (399)
...+++. +|+.|++|++.+...+++||.|+.++....|+||-++.|.++
T Consensus 138 ~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~p 187 (411)
T TIGR03224 138 GVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPP 187 (411)
T ss_pred cCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecC
Confidence 3344566 999999999988788999999998755689999999999875
No 74
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.68 E-value=23 Score=32.67 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=79.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC--------------CCCCCeEEEEeecCCCCCCch
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC--------------LPEEDTVIFVVSTTGQGDTPD 71 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~--------------l~~~~~ii~~~sT~g~G~~p~ 71 (399)
+|++.|+|.-++|. ++.+.+..+|+...++.+.++ ++. +++.|++| || |..||
T Consensus 1 ~mki~vlt~g~yG~------R~~~nl~~~~f~~~~v~v~~~-Pe~~~~fie~P~~~Lp~~~e~Di~v----a~--~lHPD 67 (224)
T COG1810 1 MMKILVLTDGEYGK------RAVNNLACKGFKNQFVAVKEY-PEELPDFIEEPEDLLPKLPEADIVV----AY--GLHPD 67 (224)
T ss_pred CcEEEEEeeccchH------HHHHhHhhhccccceEEEEec-cccccchhhCHHHhcCCCCCCCEEE----Ee--ccCcc
Confidence 58999999988873 333334355566666655554 121 23555443 33 67788
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHH
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRS 151 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~ 151 (399)
.-....+... ..+.+..|.+.+... +..++|.+...++|+....|.-.++-..+ + .+|.+.
T Consensus 68 l~~~L~e~~~--------~~~~~alIvp~~~~~-----g~rkqL~~~~~~~g~e~~~p~p~C~Le~~-~-----~p~i~~ 128 (224)
T COG1810 68 LLLALPEKAA--------EGGVKALIVPAEPPE-----GLRKQLKEFCEELGVEFEAPEPFCSLEPN-E-----NPHIDE 128 (224)
T ss_pred HHHHHHHHHH--------hCCccEEEEecCCCh-----hHHHHHHHHhhhcceeeecCCccccCCCC-C-----ChHHHH
Confidence 7666655441 357888899976554 78899999999999999888877775432 1 778887
Q ss_pred HHHHH
Q 015866 152 LWRRL 156 (399)
Q Consensus 152 l~~~l 156 (399)
+.+..
T Consensus 129 F~e~F 133 (224)
T COG1810 129 FAERF 133 (224)
T ss_pred HHHHc
Confidence 77665
No 75
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=82.73 E-value=5.6 Score=37.60 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEe---CCCCCcC----CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCC
Q 015866 20 ALDAAERIGRESERRGCPVVVRP---VDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEG 92 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~---l~~~~~~----~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~ 92 (399)
...+|++|.+.+.+.|+++...+ +|.-... -.++.+.=|+-.|.. .+..|....+|-+.|.. +..
T Consensus 79 ~~eLa~~i~~~l~~~gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~-~~~~~~~~~~lG~aL~~-------l~~ 150 (253)
T cd07363 79 SPELAERVAELLKAAGIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLP-ASLDPAEHYALGRALAP-------LRD 150 (253)
T ss_pred CHHHHHHHHHHHHhcCCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEec-CCCCHHHHHHHHHHHHh-------hhh
Confidence 45699999999999999887543 2221100 012334323333332 23466777778877754 345
Q ss_pred ceEEEEecCCCCc
Q 015866 93 VRYAVFGLGDSGY 105 (399)
Q Consensus 93 ~~~avfGlGds~y 105 (399)
.+++|+|+|+.+.
T Consensus 151 ~~v~ii~SG~lsH 163 (253)
T cd07363 151 EGVLIIGSGSSVH 163 (253)
T ss_pred CCEEEEecCccee
Confidence 6899999998765
No 76
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=81.25 E-value=4.2 Score=37.25 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=46.1
Q ss_pred eEEEEEECCCc----hHHHHHHHHHHHHH-hcCCCcEEEe-CCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 8 KLLILYASQTG----NALDAAERIGRESE-RRGCPVVVRP-VDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 8 ~v~IlY~S~tG----~te~~A~~l~~~l~-~~g~~~~v~~-l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
+|+|+++.-.| ......+.|++.|+ ..|++|++.+ .+.+..+.|.++|+||+.... ++--.++..+.|.++++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~-~~~l~~~~~~al~~~v~ 79 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTG-GDELTDEQRAALRDYVE 79 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SS-CCGS-HHHHHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCC-CCcCCHHHHHHHHHHHH
Confidence 57888888433 22467777777777 6788877554 455666678899987777665 22235556677888875
No 77
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=80.77 E-value=8.3 Score=35.62 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCCC----CcCCCCCCCeEEEEeecCCCCCCch-hHHHHHHHHHhccCCccccCCceEEE
Q 015866 23 AAERIGRESERRGCPVVVRPVDDY----DARCLPEEDTVIFVVSTTGQGDTPD-SMKVFWRFLLQKSLSKQWLEGVRYAV 97 (399)
Q Consensus 23 ~A~~l~~~l~~~g~~~~v~~l~~~----~~~~l~~~~~ii~~~sT~g~G~~p~-~~~~f~~~L~~~~~~~~~l~~~~~av 97 (399)
+-..|+..|++.|++|++..+++. +.+.|..+++||+-+.+. .+..++ ..+.|.++.+ +|..+++
T Consensus 24 ~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~-~~~l~~eq~~~l~~~V~---------~GgGlv~ 93 (215)
T cd03142 24 MHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIA-HDEVKDEIVERVHRRVL---------DGMGLIV 93 (215)
T ss_pred HHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCC-cCcCCHHHHHHHHHHHH---------cCCCEEE
Confidence 445667777889999997777763 445688999888754443 345544 5666777764 3555555
Q ss_pred EecCCCCchhHH
Q 015866 98 FGLGDSGYQKFN 109 (399)
Q Consensus 98 fGlGds~y~~f~ 109 (399)
+=.|.. +.+|.
T Consensus 94 lHsg~~-s~~y~ 104 (215)
T cd03142 94 LHSGHY-SKIFK 104 (215)
T ss_pred ECCCcC-CHHHH
Confidence 555543 33444
No 78
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=77.84 E-value=18 Score=35.65 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=57.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
..++++||=..|.-+-+|+.|.+.+.++|+.+-+++.--..-+. +-...++ -.|.. ..+..|+++|+..
T Consensus 76 P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~--n~~p~~y-----h~G~t-~D~~~~l~~l~~~--- 144 (345)
T COG0429 76 PLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEA--NTSPRLY-----HSGET-EDIRFFLDWLKAR--- 144 (345)
T ss_pred ceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCc--ccCccee-----cccch-hHHHHHHHHHHHh---
Confidence 36888888888888889999999999999999999876543221 1111221 13333 6799999999764
Q ss_pred ccccCCceEEEEec
Q 015866 87 KQWLEGVRYAVFGL 100 (399)
Q Consensus 87 ~~~l~~~~~avfGl 100 (399)
....++..+|+
T Consensus 145 ---~~~r~~~avG~ 155 (345)
T COG0429 145 ---FPPRPLYAVGF 155 (345)
T ss_pred ---CCCCceEEEEe
Confidence 35677888884
No 79
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=76.98 E-value=8 Score=29.98 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=31.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEe
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRP 42 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~ 42 (399)
++++++.||--|++..++.+|.+.+.+.|+...+..
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~ 36 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTN 36 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEE
Confidence 478999999999999999999999998888665543
No 80
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=76.63 E-value=12 Score=38.48 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=78.3
Q ss_pred eEEEEEECCC-------chHHHHHHHHHHHHHhcCCCcEEEeCCCCC--cCC-------C--CCCCeEEEEeecCCCCCC
Q 015866 8 KLLILYASQT-------GNALDAAERIGRESERRGCPVVVRPVDDYD--ARC-------L--PEEDTVIFVVSTTGQGDT 69 (399)
Q Consensus 8 ~v~IlY~S~t-------G~te~~A~~l~~~l~~~g~~~~v~~l~~~~--~~~-------l--~~~~~ii~~~sT~g~G~~ 69 (399)
++.++-+|+. ...++.++++.+.|++.|+++ +.....+ .++ + .+.+.+|+..+|||.+.
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v--v~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~- 78 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEV--VDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAK- 78 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCceE--EecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHH-
Confidence 5666767766 357788888888887776544 4443332 111 1 25678999999996531
Q ss_pred chhHHHHHHHHHhccCCccccCCceEEEEecCCC--------CchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCc
Q 015866 70 PDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS--------GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGY 141 (399)
Q Consensus 70 p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds--------~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~ 141 (399)
-....++. -++.+.+++..+. .+..+|++ ..+...|.++|.+... ..++..++. .
T Consensus 79 -----~~~~~~~~--------~~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~--v~g~~~d~~-~ 141 (452)
T cd00578 79 -----MWIAGLSE--------LRKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKV--VYGHWKDED-V 141 (452)
T ss_pred -----HHHHHHHh--------cCCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeE--EECCCCCHH-H
Confidence 22222222 1457888888764 23445543 6677788899977543 334433222 6
Q ss_pred ccchhhHHHH--HHHHHH
Q 015866 142 EGALDPWMRS--LWRRLH 157 (399)
Q Consensus 142 ~~~~~~W~~~--l~~~l~ 157 (399)
.+.+..|..- +++.|.
T Consensus 142 ~~~i~~~~raa~~~~~lr 159 (452)
T cd00578 142 LRKIESWARAAAAVATLR 159 (452)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 7788899874 455554
No 81
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=76.25 E-value=12 Score=35.69 Aligned_cols=80 Identities=14% Similarity=0.078 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCC--CCcCC------C-C-CCCe-EEEEeecCCCCCCchhHHHHHHHHHhccCCcc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDD--YDARC------L-P-EEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQ 88 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~--~~~~~------l-~-~~~~-ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~ 88 (399)
...+|+.|++.+.+.|+++...+-.. +|-.- + . ..+. +|.++-+. ...+....+|=+.|.+.- .
T Consensus 89 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~--~~~~~~~~~lG~al~~~l-~-- 163 (271)
T cd07373 89 DTALAEACVTACPEHGVHARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNL--YHSGEITEKLGAIAADAA-K-- 163 (271)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCC--CCCHHHHHHHHHHHHHHH-H--
Confidence 67899999999999999887555432 22111 1 1 2222 44433322 346666777777776410 0
Q ss_pred ccCCceEEEEecCCCCc
Q 015866 89 WLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y 105 (399)
-.+++++|+|+|+-+.
T Consensus 164 -~~~~rV~iIgSG~lSH 179 (271)
T cd07373 164 -DQNKRVAVVGVGGLSG 179 (271)
T ss_pred -HcCCeEEEEEeccccc
Confidence 1358999999998775
No 82
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=75.68 E-value=7.1 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=29.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhc-CCCcE
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERR-GCPVV 39 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~-g~~~~ 39 (399)
++|.|.|+..+-.=......+++.|++. |++|.
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~ 34 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVI 34 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCcee
Confidence 5799999998888889999999999998 99875
No 83
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=74.16 E-value=12 Score=34.55 Aligned_cols=92 Identities=24% Similarity=0.305 Sum_probs=53.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC---Cc-------CCCCCCCeEEEEeecCCCCCCchhHHHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---DA-------RCLPEEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~---~~-------~~l~~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
|+|+|...+ .-+..+++.|++.|+++..+.+=++ +. ..+..++.|||.++. .++.|
T Consensus 2 ~~ilitr~~------~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~--------av~~~ 67 (249)
T PRK05928 2 MKILVTRPS------PKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKN--------AVEFL 67 (249)
T ss_pred CEEEEeCCH------HHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHH--------HHHHH
Confidence 555554443 2344666777778988754433221 11 234567877776643 47778
Q ss_pred HHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
++++... ....+.+.++.+.| +...+.|++.|.+..
T Consensus 68 ~~~~~~~--~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 68 LSALKKK--KLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred HHHHHhc--CcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 8887622 12245667777776 345566778886543
No 84
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.86 E-value=80 Score=30.44 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC-CCcCCC-------C---CCCeEEEEee------------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD-YDARCL-------P---EEDTVIFVVS------------ 62 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~-~~~~~l-------~---~~~~ii~~~s------------ 62 (399)
.+++.|+....---+..+++...+.+++.|++.....+.+ .+.+++ . +.+.+++-.|
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld 112 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFD 112 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHh
Confidence 3567777777777888888888888888888887777732 221110 0 1111111111
Q ss_pred ------------cCCCCC--------CchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 63 ------------TTGQGD--------TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 63 ------------T~g~G~--------~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
|...|. .|-....|++.|+.... .++|+++.|+|-| +-++|-+...|.+.
T Consensus 113 ~I~~aKDVdg~n~~n~G~l~~~~~~~~p~T~~gii~~L~~~~i---~l~Gk~vvViG~g-------g~vGkpia~~L~~~ 182 (283)
T PRK14192 113 AISLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMRLLKAYNI---ELAGKHAVVVGRS-------AILGKPMAMMLLNA 182 (283)
T ss_pred ccCHHHhcCCCCccccCccccCCCcccCCcHHHHHHHHHHcCC---CCCCCEEEEECCc-------HHHHHHHHHHHHhC
Confidence 211222 35556889998876533 5899999999975 34788999999999
Q ss_pred CCee
Q 015866 123 GATA 126 (399)
Q Consensus 123 Ga~~ 126 (399)
||+.
T Consensus 183 gatV 186 (283)
T PRK14192 183 NATV 186 (283)
T ss_pred CCEE
Confidence 9954
No 85
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=73.62 E-value=9.3 Score=29.32 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=34.1
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEE--EeCCCCCcCCCCCCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVV--RPVDDYDARCLPEED 55 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v--~~l~~~~~~~l~~~~ 55 (399)
+++|+-++-.|+++.++.+|.+.+.+.|+...+ .++++. ++.++|
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~~---~~~~~D 47 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGSA---KASSAD 47 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccccc---CCCCCC
Confidence 478999999999999999999999988876433 344432 244677
No 86
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=73.23 E-value=18 Score=33.98 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeC------CCCC-----cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 21 LDAAERIGRESERRGCPVVVRPV------DDYD-----ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 21 e~~A~~l~~~l~~~g~~~~v~~l------~~~~-----~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
+.-+..+++.|++.|+++..+.+ .+.. ..++.+++.|||.|.+ ..+.|+++|..... .
T Consensus 12 ~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~n--------aV~~~~~~l~~~~~---~ 80 (255)
T PRK05752 12 AEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKP--------AARLGLELLDRYWP---Q 80 (255)
T ss_pred HHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHH--------HHHHHHHHHHhhCC---C
Confidence 34566777778888988765432 2211 1345678877666643 25668888754321 2
Q ss_pred cCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 90 l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
..+.+++.+| +.-.+.|++.|.+..++
T Consensus 81 ~~~~~~~aVG-------------~~Ta~al~~~G~~~~~~ 107 (255)
T PRK05752 81 PPQQPWFSVG-------------AATAAILQDYGLDVSYP 107 (255)
T ss_pred CcCCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 3346666666 34456677788765443
No 87
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.77 E-value=61 Score=31.56 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=77.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecCC---------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTTG--------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~g--------- 65 (399)
.+++.|+....---+..+++...+.+++.|+..+++.+.+- +.++ | ++.+.|++-.|--.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~ 112 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQ 112 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 46788888888889999999999999999999998888542 1111 1 12334555444221
Q ss_pred --------CC---------------CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 66 --------QG---------------DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 66 --------~G---------------~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
+| -.|-++..-++.|+.... .+.|++++|+|.|. -+|+-+...|.+.
T Consensus 113 ~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~V~vIG~s~-------ivG~PmA~~L~~~ 182 (301)
T PRK14194 113 AINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCG---DLTGKHAVVIGRSN-------IVGKPMAALLLQA 182 (301)
T ss_pred ccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCC---CCCCCEEEEECCCC-------ccHHHHHHHHHHC
Confidence 11 125556666666655433 58999999999863 3678888899999
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
|++..
T Consensus 183 gatVt 187 (301)
T PRK14194 183 HCSVT 187 (301)
T ss_pred CCEEE
Confidence 98774
No 88
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=71.49 E-value=23 Score=34.31 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC--------C-CCCCe-EEEEeec----C-CCCCCchhHHHHHHHHHhc
Q 015866 19 NALDAAERIGRESERRGCPVVVRPVDDYDARC--------L-PEEDT-VIFVVST----T-GQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 19 ~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~--------l-~~~~~-ii~~~sT----~-g~G~~p~~~~~f~~~L~~~ 83 (399)
+...+|+.|++.+.+.|+++...+-.+...+- + +..+. +|-++.. + ....++....+|=+.|.+.
T Consensus 96 gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~~a 175 (294)
T cd07372 96 VDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATREA 175 (294)
T ss_pred CCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCCHHHHHHHHHHHHHH
Confidence 57889999999999999988654333332111 1 22232 3333321 1 1123345555666666542
Q ss_pred cCCccccCCceEEEEecCCCCc
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y 105 (399)
- . -.++|++|+|+||-+.
T Consensus 176 l-~---~~~~RV~vIaSG~LSH 193 (294)
T cd07372 176 I-R---KTGRRAVLLASNTLSH 193 (294)
T ss_pred H-H---hcCCeEEEEEeCcccc
Confidence 1 1 1378999999998655
No 89
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=71.39 E-value=7.8 Score=30.73 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=32.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPV 43 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l 43 (399)
+++++=||-.||+..++.++.+.+.++|+++++...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~ 39 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQC 39 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 689999999999999999999999999998877663
No 90
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=71.10 E-value=8.5 Score=37.39 Aligned_cols=44 Identities=9% Similarity=0.269 Sum_probs=37.4
Q ss_pred cee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccC
Q 015866 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (399)
Q Consensus 230 ~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~ 274 (399)
.+. +|++.+.++.+.+..++++|.|+.+ ..+.|+||-++.|.++
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~ 68 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPP 68 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCC
Confidence 344 8999999987676678999999987 6789999999999875
No 91
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=70.95 E-value=5.4 Score=34.00 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=30.8
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
-+++|.|.|+..+..|+.+.+.+.++|..+.+..+.+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~ 60 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG 60 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee
Confidence 7899999999999999999999999998887776554
No 92
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=69.99 E-value=84 Score=28.30 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=65.1
Q ss_pred CCeEEEE----EECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCC-eEEEEeecCCCCCCc---hhHHHHH
Q 015866 6 RNKLLIL----YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEED-TVIFVVSTTGQGDTP---DSMKVFW 77 (399)
Q Consensus 6 ~~~v~Il----Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~-~ii~~~sT~g~G~~p---~~~~~f~ 77 (399)
|++|.|+ +-+.+|--|.+|+.|+..+.+.|++++|....+........+. .=++-.++-..|..- -+...++
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~ 80 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLL 80 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHH
Confidence 4566666 5577999999999999999999999999988665444444433 223334555555322 1222222
Q ss_pred HHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
..|.-.. .+..+.--+-++|.+... +.--+-+.|...|.+.+..
T Consensus 81 ~al~~~~--~~~~~~~ii~ilg~~~g~------~~~~~~r~~~~~g~~v~vN 124 (185)
T PF09314_consen 81 HALRFIK--QDKIKYDIILILGYGIGP------FFLPFLRKLRKKGGKVVVN 124 (185)
T ss_pred HHHHHHh--hccccCCEEEEEcCCccH------HHHHHHHhhhhcCCcEEEC
Confidence 2221100 001223356677764111 2233445566777777653
No 93
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=68.68 E-value=11 Score=36.16 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=35.9
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~ 274 (399)
+|++++.||+++...+++++.|+.+ ..+.|+||.++.|.++
T Consensus 12 ~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 12 KVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPP 52 (286)
T ss_pred EEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECC
Confidence 8999999998777778999999985 5789999999999865
No 94
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=67.68 E-value=38 Score=32.28 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEe---CCCCC---cCCC-CCCC--eEEEEeecCCCCC-CchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRP---VDDYD---ARCL-PEED--TVIFVVSTTGQGD-TPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~---l~~~~---~~~l-~~~~--~ii~~~sT~g~G~-~p~~~~~f~~~L~~~~~~~~~ 89 (399)
-..+|+.|.+.+.+.|+++.... +|.-. ..-+ +..+ +|-+...++.... ++....+|=+.|.+.-. +..
T Consensus 89 d~~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~i~-~~~ 167 (268)
T cd07367 89 HREFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQYVE-KRR 167 (268)
T ss_pred CHHHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHH-hcC
Confidence 56799999999999999765432 22210 0011 1222 3333333332222 34455556666654310 000
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
-.+++++|+|+|+.+.
T Consensus 168 ~~d~rV~iiaSGgLSH 183 (268)
T cd07367 168 PAGERVAVIAAGGLSH 183 (268)
T ss_pred CCCCcEEEEEcccccC
Confidence 1578999999998775
No 95
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=66.32 E-value=28 Score=32.60 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEeCCCC--------CcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCc
Q 015866 22 DAAERIGRESERRGCPVVVRPVDDY--------DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGV 93 (399)
Q Consensus 22 ~~A~~l~~~l~~~g~~~~v~~l~~~--------~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~ 93 (399)
.-|..+++.+++.|+++..+.+=++ +..++..++.|||-|. . ..+.|++.+...... .++++
T Consensus 11 ~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~-~-------av~~~~~~l~~~~~~--~~~~~ 80 (248)
T COG1587 11 EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSP-N-------AVRFFFEALKEQGLD--ALKNK 80 (248)
T ss_pred hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECH-H-------HHHHHHHHHHhhccc--ccccC
Confidence 5667777888888987654443222 2334555665555443 2 367788888665422 56788
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 94 RYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 94 ~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
++++.| ..-.+.|+++|.+..+...
T Consensus 81 ~i~aVG-------------~~Ta~~l~~~G~~~~~~p~ 105 (248)
T COG1587 81 KIAAVG-------------EKTAEALRKLGIKVDFIPE 105 (248)
T ss_pred eEEEEc-------------HHHHHHHHHhCCCCCcCCC
Confidence 888888 4566788899977765433
No 96
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=65.43 E-value=8.6 Score=31.22 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=29.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPV 43 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l 43 (399)
+++|+++=|+-.+|+ -+|+++.+.++++|+++++...
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~gi~~~i~a~ 37 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQGKDIEVDAI 37 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHCCCceEEEEe
Confidence 356788777777555 9999999999999998776443
No 97
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=65.08 E-value=15 Score=32.52 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=28.0
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
....+.|++++|+|+| ..++.+.++|+.+|++.++
T Consensus 30 ~~~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp TBS-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred CccccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 3446899999999976 6799999999999998764
No 98
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.10 E-value=1.4e+02 Score=28.79 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
..++.|+....--.+..+++...+.+++.|+.++++.+.+- +.++ | .+.+.|++-.|--
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~ 111 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIE 111 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 45788888888889999999999999999999999888642 1111 1 1223444444421
Q ss_pred ---------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 65 ---------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
| .+-.|-.+..-++.|+.... .+.|+++.|+|-|.. .++-+..+|.+.
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvViGrs~i-------VGkPla~lL~~~ 181 (285)
T PRK14189 112 AIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIGI---PLRGAHAVVIGRSNI-------VGKPMAMLLLQA 181 (285)
T ss_pred hcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcCC---CCCCCEEEEECCCCc-------cHHHHHHHHHHC
Confidence 1 11235566667777765543 589999999997633 578888899999
Q ss_pred CCeeec
Q 015866 123 GATAVV 128 (399)
Q Consensus 123 Ga~~~~ 128 (399)
||+...
T Consensus 182 ~atVt~ 187 (285)
T PRK14189 182 GATVTI 187 (285)
T ss_pred CCEEEE
Confidence 998753
No 99
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=63.89 E-value=47 Score=28.05 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=64.3
Q ss_pred EEEECCCchHHHHHHHHH-HHHHhcCCCcEEEeCCC-CCcCCC----CCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 11 ILYASQTGNALDAAERIG-RESERRGCPVVVRPVDD-YDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~-~~l~~~g~~~~v~~l~~-~~~~~l----~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
|+-|+..|..-.+...|- ..|+..||+| +++-- .+++.+ .+++.-+++.|+. .|..-..++.+.+.|.+..
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~GfeV--idLG~~v~~e~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~~~g 78 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAGFNV--VNLGVLSPQEEFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCDEAG 78 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHHHCC
Confidence 667777888877776554 4557789865 45532 333332 2455556666665 4555567899999887642
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
+++.+ |+.-|.-.-+ ..-...-.++|+++|...+++.+.
T Consensus 79 -----l~~v~--vivGG~~~i~--~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 79 -----LKDIL--LYVGGNLVVG--KQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred -----CCCCe--EEEECCCCCC--hhhhHHHHHHHHHcCCCEEECcCC
Confidence 34433 3333321100 001123446789999999987654
No 100
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.54 E-value=1.1e+02 Score=29.37 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=78.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-cCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+-. .++ | ++.+.|++-.|--
T Consensus 26 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~ 105 (279)
T PRK14178 26 YPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIA 105 (279)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 456788888888889999999999999999999988885431 111 1 1223455544421
Q ss_pred ---------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 65 ---------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
| .+-.|-++...++.|+.... .++|+++.|+|-+ ...++-+..+|...
T Consensus 106 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i---~l~Gk~V~ViGrs-------~~vGrpla~lL~~~ 175 (279)
T PRK14178 106 AILPEKDVDGFHPLNLGRLVSGLPGFAPCTPNGIMTLLHEYKI---SIAGKRAVVVGRS-------IDVGRPMAALLLNA 175 (279)
T ss_pred ccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHcCC---CCCCCEEEEECCC-------ccccHHHHHHHHhC
Confidence 1 12246677777777766543 5899999999965 34578888899998
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
||+..
T Consensus 176 ~atVt 180 (279)
T PRK14178 176 DATVT 180 (279)
T ss_pred CCeeE
Confidence 98764
No 101
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=63.14 E-value=16 Score=27.01 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=26.0
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCc
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPV 38 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~ 38 (399)
+++++-++-.|++..++.+|.+.+.+.++..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~ 31 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEV 31 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeE
Confidence 3667777778999999999999999888753
No 102
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=62.71 E-value=11 Score=29.89 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=37.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-CCCCCCeEEEEee
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-CLPEEDTVIFVVS 62 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-~l~~~~~ii~~~s 62 (399)
+++|+++=|+--+++ -+++++.+.+.++|+++++....-.... ...++| +|+.+|
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~D-vill~p 58 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDAD-VVLLAP 58 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCC-EEEECc
Confidence 467888888887766 6899999999999998776654422221 234566 444443
No 103
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=62.47 E-value=63 Score=30.86 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEe-----CCCCCcC---CC-CCCCe-EEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRP-----VDDYDAR---CL-PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~-----l~~~~~~---~l-~~~~~-ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
...+|++|.+.+.+.|+++.... +|.-... -+ ++.+. ||-++-.. ....+....+|-+.|.+.- . .
T Consensus 91 ~~~LA~~i~~~l~~~Gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~-~~~~~~~~~~lG~ai~~al-~--~ 166 (272)
T cd07362 91 DPELGRLLVEEGQEAGLRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACW-TAASLEESYTWGEVIGKAL-L--E 166 (272)
T ss_pred CHHHHHHHHHHHHHcCCceeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccC-CCCCHHHHHHHHHHHHHHH-H--h
Confidence 45799999999999999876432 2211100 01 22333 33332222 1234444555554443321 1 2
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
+ +.+++|+|+|+.+.
T Consensus 167 ~-~~rv~ii~SG~lsH 181 (272)
T cd07362 167 S-DKRVVFLASGSLSH 181 (272)
T ss_pred h-CCCEEEEEeCcccc
Confidence 3 68899999998765
No 104
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=62.46 E-value=5.9 Score=34.83 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=36.0
Q ss_pred cCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 90 l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
+...+++|+-.||+....++..+..+..+|++.|+....-..-.|+
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd 47 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDD 47 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCC
Confidence 4578999999999887777888889999999999986643333443
No 105
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=61.99 E-value=42 Score=32.28 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC--------C-CCCCe-EEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDARC--------L-PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~--------l-~~~~~-ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
...+|++|++.+.+.|+.+......+...+- + ++.+. +|-++-.. ....+....+|=+.|.+...
T Consensus 95 d~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~-~~~~~~~~~~lG~al~~~i~---- 169 (282)
T TIGR02298 95 NPALGQLIADEAQEHGVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWC-TVHDIEESRALGEAIRKAIE---- 169 (282)
T ss_pred CHHHHHHHHHHHHHCCCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecC-CCCCHHHHHHHHHHHHHHHH----
Confidence 4779999999999999887543333221110 1 23332 44443322 13356666777777755310
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
-.+++++|+|+||.+.
T Consensus 170 ~~~~rV~iIaSG~lSH 185 (282)
T TIGR02298 170 QSDGRVAVLASGSLSH 185 (282)
T ss_pred hcCCCEEEEEecccce
Confidence 1578999999998775
No 106
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=61.94 E-value=49 Score=28.15 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=67.3
Q ss_pred EEEEECCCchHHHHHHHH-HHHHHhcCCCcEEEeCCC-CCcCCC----CCCCeEEEEeecCCCCCCchhHHHHHHHHHhc
Q 015866 10 LILYASQTGNALDAAERI-GRESERRGCPVVVRPVDD-YDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l-~~~l~~~g~~~~v~~l~~-~~~~~l----~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~ 83 (399)
.|+-|+..|..-.+...+ +..|+..||+| +++-- .+++++ .+++.=+++.|+. .|..-..++.+.+.|.+.
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~GfeV--i~LG~~v~~e~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAGFNV--VNLGVLSPQEEFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKCDEA 79 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHHHHC
Confidence 466688888888887755 55567889866 45432 333433 3456656666766 466666788899888765
Q ss_pred cCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
. +.+.. .++| |.-..+. .-.....++|+++|..++++.+.
T Consensus 80 g-----l~~~~-vivG-G~~vi~~--~d~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 80 G-----LEGIL-LYVG-GNLVVGK--QDFPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred C-----CCCCE-EEec-CCcCcCh--hhhHHHHHHHHHcCCCEEECcCC
Confidence 3 44544 3455 3211110 01123456789999998887554
No 107
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=61.68 E-value=18 Score=36.46 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=28.6
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| ..|+.+.++|+.+|.+.++
T Consensus 112 ~~L~gktvGIIG~G--------~IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 112 FSLHDRTVGIVGVG--------NVGRRLQARLEALGIKTLL 144 (378)
T ss_pred CCcCCCEEEEECcC--------HHHHHHHHHHHHCCCEEEE
Confidence 36899999999986 5789999999999998763
No 108
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=61.59 E-value=29 Score=27.54 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCC--cEEEeCCCCCcCCCCCCCeEEEEeecC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCP--VVVRPVDDYDARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~--~~v~~l~~~~~~~l~~~~~ii~~~sT~ 64 (399)
+++|+++=|+-=|++-.++.++.+.|+++|++ +....++++. .....+| ||++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~-~~~~~aD--iiv~s~~ 58 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIK-ALTDGAD--IIVTSTK 58 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccc-cCCCccc--EEEEehH
Confidence 46889999999999999999999999999995 4555666553 2233444 4455554
No 109
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=61.11 E-value=9.9 Score=29.27 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=38.9
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC-CCCCeEEEEeecC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-PEEDTVIFVVSTT 64 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l-~~~~~ii~~~sT~ 64 (399)
+++++=++--||+..+|++|.+.+.+.|+++.+........... .++| +|+.++..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D-~il~~~~i 57 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDAD-LILLTPQI 57 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-S-EEEEEESS
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCc-EEEEcCcc
Confidence 57788888889999999999999999998887665542222222 3466 45555554
No 110
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=60.84 E-value=16 Score=34.06 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=30.1
Q ss_pred eeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 234 v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
+..+..|+......++++|.|+.++....|+||.++.|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 3 LQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eEeeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 334444444333348999999987556899999999999865
No 111
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=60.69 E-value=1.5e+02 Score=28.88 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=77.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC-CCcCCC----------CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD-YDARCL----------PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~-~~~~~l----------~~~~~ii~~~sT~---------- 64 (399)
..++.|+....---+..+++...+.+++.|+.++++.+.. .+.+++ ++.+.|++-.|--
T Consensus 39 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~ 118 (299)
T PLN02516 39 VPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILN 118 (299)
T ss_pred CCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHh
Confidence 4577788888888999999999999999999999888853 222211 1223444444411
Q ss_pred ---------------------C---CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHH
Q 015866 65 ---------------------G---QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL 120 (399)
Q Consensus 65 ---------------------g---~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~ 120 (399)
| .+-.|-++...++.|+.... .+.|+++.|+|-+ +-.+|=+..+|.
T Consensus 119 ~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvVIGRS-------~iVGkPla~lL~ 188 (299)
T PLN02516 119 EISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGI---PIKGKKAVVVGRS-------NIVGLPVSLLLL 188 (299)
T ss_pred ccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHHH
Confidence 1 12246677777777765543 5899999999954 346788888998
Q ss_pred hCCCeee
Q 015866 121 DLGATAV 127 (399)
Q Consensus 121 ~lGa~~~ 127 (399)
+.||+..
T Consensus 189 ~~~ATVt 195 (299)
T PLN02516 189 KADATVT 195 (299)
T ss_pred HCCCEEE
Confidence 8898764
No 112
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=60.17 E-value=27 Score=37.23 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=61.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------C-CCCCCeEEEEeecCCCC------------C
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR------C-LPEEDTVIFVVSTTGQG------------D 68 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~-l~~~~~ii~~~sT~g~G------------~ 68 (399)
.-.|+|.+. ++-++.+++.|.+.|+.+..+.-.--+.+ . +.+.-.||+.|.-+|.| +
T Consensus 231 ~~GIIYc~s----Rk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 231 KSGIIYCLT----RKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred CCeEEEEee----HHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 346888764 45555555555556888776654421111 1 23444577777878888 4
Q ss_pred CchhHHHHHHHHHhccCCccccCCceEEEEecCCCCch
Q 015866 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ 106 (399)
Q Consensus 69 ~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~ 106 (399)
+|.+.+.++.+.-+. +.+.+....+..|+.+|..|.
T Consensus 307 lP~s~EsYyQE~GRA--GRDG~~a~aill~~~~D~~~~ 342 (590)
T COG0514 307 LPGSIESYYQETGRA--GRDGLPAEAILLYSPEDIRWQ 342 (590)
T ss_pred CCCCHHHHHHHHhhc--cCCCCcceEEEeeccccHHHH
Confidence 588999999987543 455677788999999998765
No 113
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=59.75 E-value=6.2 Score=29.98 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=35.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEE
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIF 59 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~ 59 (399)
.+++|+-++-.|++..++.+|.+.+.+.+. +..+...++...+..++|++|-
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~~~~-v~~~~~~~~~~~~~~~~DlIit 52 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPEIEI-IDVISLRELEEVDLDDYDLIIS 52 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCCceE-EEEEeHHHHhhCcccCCCEEEE
Confidence 368899999999999999999999875553 3444444443333456664443
No 114
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.48 E-value=1.8e+02 Score=28.32 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecCC---------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTTG--------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~g--------- 65 (399)
..++.|+.....--+..+++...+.+++.|+.++++.+... +.++ | .+.+.|++-.|--.
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~ 111 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQ 111 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHh
Confidence 46788999988899999999999999999999998887543 2111 1 12234444444210
Q ss_pred --------CC---------------CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 66 --------QG---------------DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 66 --------~G---------------~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
+| -.|-++...++.|+.... .+.|++++|+|-+ ..+|+-+..+|.+.
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i---~~~Gk~V~viGrs-------~~mG~PmA~~L~~~ 181 (296)
T PRK14188 112 AIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHG---DLSGLNAVVIGRS-------NLVGKPMAQLLLAA 181 (296)
T ss_pred ccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEEcCC-------cchHHHHHHHHHhC
Confidence 11 235566667777765433 5899999999921 35688888899888
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
|++..
T Consensus 182 g~tVt 186 (296)
T PRK14188 182 NATVT 186 (296)
T ss_pred CCEEE
Confidence 98764
No 115
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=59.29 E-value=30 Score=28.47 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=57.0
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC---------cCCC-CCCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---------ARCL-PEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~---------~~~l-~~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
+.|+=+|. +..++++++.+.|.++|+++..++...-. ..+. ..-|+++++++ |+.....++
T Consensus 3 iAVvGaS~--~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~-------~~~~~~~v~ 73 (116)
T PF13380_consen 3 IAVVGASD--NPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP-------PDKVPEIVD 73 (116)
T ss_dssp EEEET--S--STTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S--------HHHHHHHHH
T ss_pred EEEEcccC--CCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC-------HHHHHHHHH
Confidence 44443443 55678999999999999887777665422 1222 24566776654 446667777
Q ss_pred HHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 79 FLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 79 ~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
.+... |.+.++|-.| .....+.+.+++.|.+.+.|.+
T Consensus 74 ~~~~~--------g~~~v~~~~g--------~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 74 EAAAL--------GVKAVWLQPG--------AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHH--------T-SEEEE-TT--------S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHc--------CCCEEEEEcc--------hHHHHHHHHHHHcCCEEEeCCc
Confidence 77543 6777888776 2345667777788888876654
No 116
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.52 E-value=83 Score=30.50 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=32.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEe
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRP 42 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~ 42 (399)
+++|.|++-.....+..+++++.+.|.++|+++.+..
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~ 40 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDE 40 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 5679999999999999999999999999998876654
No 117
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.18 E-value=1.9e+02 Score=27.96 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=76.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCCC----------CCCCeEEEEeecC-----------
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----------PEEDTVIFVVSTT----------- 64 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~l----------~~~~~ii~~~sT~----------- 64 (399)
.++.|+....-.-+..+++...+.+++.|+.++++.+.+- +.+++ .+.+.|++-.|--
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~ 113 (285)
T PRK10792 34 PGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLER 113 (285)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 5677887777778999999999999999999999988642 21211 1223455544421
Q ss_pred --------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCC
Q 015866 65 --------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG 123 (399)
Q Consensus 65 --------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lG 123 (399)
| .+-.|-++...++.|+.... .+.|+++.|+|-| .-.++=+...|.+.|
T Consensus 114 I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i---~l~Gk~vvViGrs-------~iVG~Pla~lL~~~~ 183 (285)
T PRK10792 114 IHPDKDVDGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERYGI---DTYGLNAVVVGAS-------NIVGRPMSLELLLAG 183 (285)
T ss_pred cCcccccCccChhhHhHHhCCCCCCCCCCHHHHHHHHHHcCC---CCCCCEEEEECCC-------cccHHHHHHHHHHCC
Confidence 0 11135566677777765543 5899999999965 235788888898889
Q ss_pred Ceee
Q 015866 124 ATAV 127 (399)
Q Consensus 124 a~~~ 127 (399)
|+..
T Consensus 184 atVt 187 (285)
T PRK10792 184 CTVT 187 (285)
T ss_pred CeEE
Confidence 8764
No 118
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=56.42 E-value=19 Score=36.21 Aligned_cols=33 Identities=33% Similarity=0.377 Sum_probs=28.2
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| ..|+.+.++|+.+|.+.++
T Consensus 112 ~~l~gktvGIIG~G--------~IG~~va~~l~a~G~~V~~ 144 (381)
T PRK00257 112 VDLAERTYGVVGAG--------HVGGRLVRVLRGLGWKVLV 144 (381)
T ss_pred CCcCcCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 46899999999987 4789999999999998753
No 119
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.37 E-value=1.7e+02 Score=28.22 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=78.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC-----------
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT----------- 64 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~----------- 64 (399)
.++.|+....---+..+++...+.+++.|+.++++.+.+. +.++ | .+.+.|++-.|--
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~ 113 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDR 113 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence 5677888888888999999999999999999999988653 2221 1 2334566655521
Q ss_pred --------------------CC-CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCC
Q 015866 65 --------------------GQ-GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG 123 (399)
Q Consensus 65 --------------------g~-G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lG 123 (399)
|. +-.|-++..-++.|+.... .+.|+++.|+|-+ +-.+|=+..+|.+.|
T Consensus 114 I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~i---~l~Gk~vvViGrS-------~iVGkPla~lL~~~~ 183 (284)
T PRK14177 114 IALEKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYGI---DVTGKNAVVVGRS-------PILGKPMAMLLTEMN 183 (284)
T ss_pred cCcccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHHHCC
Confidence 11 1236677777777766543 5899999999954 346788888898888
Q ss_pred Ceee
Q 015866 124 ATAV 127 (399)
Q Consensus 124 a~~~ 127 (399)
|+..
T Consensus 184 atVt 187 (284)
T PRK14177 184 ATVT 187 (284)
T ss_pred CEEE
Confidence 8764
No 120
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=55.85 E-value=21 Score=35.28 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=45.5
Q ss_pred CCeEEEEEECCCch-HHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCC---CCCe-EEEEee
Q 015866 6 RNKLLILYASQTGN-ALDAAERIGRESERRGCPVVVRPVDDYDARCLP---EEDT-VIFVVS 62 (399)
Q Consensus 6 ~~~v~IlY~S~tG~-te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~---~~~~-ii~~~s 62 (399)
.+.+.|+.||.+|. ...++++|.+.++++|.+..++-+++.++++|. +.|. |++.||
T Consensus 232 A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~eiD~fV~~aCP 293 (332)
T TIGR00322 232 GKKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMFDQIDVFVQVACP 293 (332)
T ss_pred CCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCcCEEEEecCC
Confidence 46799999999985 567999999999999999999999999877654 3443 444454
No 121
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.60 E-value=2e+02 Score=27.78 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=78.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-CC-------C---CCCCeEEEEeecCC---------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-RC-------L---PEEDTVIFVVSTTG--------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~-~~-------l---~~~~~ii~~~sT~g--------- 65 (399)
..++.|+....--.+..+++...+.+++.|+.++++.+.+... ++ | ++.+.|++-.|--.
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~ 110 (285)
T PRK14191 31 RPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLE 110 (285)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4578888888888999999999999999999999988864321 11 1 12234544444210
Q ss_pred --------CC---------------CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 66 --------QG---------------DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 66 --------~G---------------~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
+| -.|-++...++.|+.... .+.|+++.|+|-| +-.++-+..+|.+.
T Consensus 111 ~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvVvGrs-------~~VG~Pla~lL~~~ 180 (285)
T PRK14191 111 AIDPNKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHI---EIKGKDVVIIGAS-------NIVGKPLAMLMLNA 180 (285)
T ss_pred cCCccccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCC---CCCCCEEEEECCC-------chhHHHHHHHHHHC
Confidence 11 235566666677665443 5899999999965 45788899999999
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
||+..
T Consensus 181 gAtVt 185 (285)
T PRK14191 181 GASVS 185 (285)
T ss_pred CCEEE
Confidence 99864
No 122
>PRK06490 glutamine amidotransferase; Provisional
Probab=55.38 E-value=88 Score=29.24 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=45.0
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC--CCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD--DYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~--~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
.+++|+|+=-+..++...+++.+. +.|++++++... +..++++.+++.+|+..+..+..+..+......+++.
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~----~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~ 80 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQ----ERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWIS 80 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHH----HCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 478899997777777777666654 568888877653 2234467777877766555433333333444444443
No 123
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=54.97 E-value=91 Score=25.23 Aligned_cols=103 Identities=20% Similarity=0.145 Sum_probs=58.8
Q ss_pred EEEECCCchHHHHHHHHH-HHHHhcCCCcEEEeCCCCCcCCC----CCCC-eEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 11 ILYASQTGNALDAAERIG-RESERRGCPVVVRPVDDYDARCL----PEED-TVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~-~~l~~~g~~~~v~~l~~~~~~~l----~~~~-~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
|+.++.-|..-.+...+. ..|+..|++|.... .+...+++ .+.+ -+|.+|+|. +.....+..+.+.+++..
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg-~~~~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGLL--TTHMTLMKEVIEELKEAG 78 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHHcC
Confidence 567777777777776554 45567898774333 22333333 2223 255555553 344467888888886642
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
..+..+.+=|..-+. .. +.+++.|+..+++.+
T Consensus 79 -----~~~~~i~vGG~~~~~------~~----~~~~~~G~D~~~~~~ 110 (119)
T cd02067 79 -----LDDIPVLVGGAIVTR------DF----KFLKEIGVDAYFGPA 110 (119)
T ss_pred -----CCCCeEEEECCCCCh------hH----HHHHHcCCeEEECCH
Confidence 124555555543221 11 467888998877643
No 124
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.76 E-value=1.1e+02 Score=25.24 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=59.6
Q ss_pred EEEECCCchHHHHHHHHHHH-HHhcCCCcEEEeCCCCCcCCC----CC-CCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 11 ILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCL----PE-EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~-l~~~g~~~~v~~l~~~~~~~l----~~-~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
|+.++--|---.+...+... ++..|+++...-.+ .+++++ .+ ..-+|++|++. +.....++.+.+.|++..
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLRELG 78 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHHHhcC
Confidence 45556666666666655554 46789866533332 333332 12 22366666664 456667888888887642
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
+.+..+.+=|.+ .+...+++.++|...++..+.
T Consensus 79 -----~~~i~i~~GG~~----------~~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 79 -----AGDILVVGGGII----------PPEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred -----CCCCEEEEECCC----------CHHHHHHHHHCCCCEEECCCC
Confidence 234444444321 234457888899888776554
No 125
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=54.48 E-value=22 Score=35.18 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=33.2
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCC-cEEEeCC
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCP-VVVRPVD 44 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~-~~v~~l~ 44 (399)
+++|+|+|+++|..|--...|+.|+++|+++|+. +.+.|.-
T Consensus 2 ~~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~ 43 (380)
T PRK13609 2 IKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLF 43 (380)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhH
Confidence 4578999999998778889999999999999986 4444543
No 126
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=54.42 E-value=47 Score=31.44 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------C-CCC--CCeEEEEeecCC-CCCCchhHHHHHHHHHhccCCcc
Q 015866 19 NALDAAERIGRESERRGCPVVVRPVDDYDAR------C-LPE--EDTVIFVVSTTG-QGDTPDSMKVFWRFLLQKSLSKQ 88 (399)
Q Consensus 19 ~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~-l~~--~~~ii~~~sT~g-~G~~p~~~~~f~~~L~~~~~~~~ 88 (399)
....+|++|.+.+.+.|+++....--.+|-. - .++ ...|-+...+.. -...|....+|=+.|.+...
T Consensus 94 g~~~la~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~~lG~aL~~~~~--- 170 (272)
T PF02900_consen 94 GDPELAERIAEHLRKAGFDVAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHYRLGRALRKARE--- 170 (272)
T ss_dssp B-HHHHHHHHHHHHHTTS-EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHhcCCCEEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHHHHHHHHHHHHH---
Confidence 3568999999999999988654111111100 0 122 223434444421 23445566677777755321
Q ss_pred ccCCceEEEEecCCCCch-------hHHH-HHHHHHHHHHh
Q 015866 89 WLEGVRYAVFGLGDSGYQ-------KFNF-VAKKLDNRLLD 121 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~-------~f~~-~~k~l~~~L~~ 121 (399)
.. +.+++|+|+|+.+.. .+.. .++.+|+++.+
T Consensus 171 ~~-~~rv~vi~SG~lsH~l~~~~~~~~~~~~~~~fD~~i~~ 210 (272)
T PF02900_consen 171 SS-DERVAVIASGGLSHNLRDPRPGGYDPPWAEEFDEWILD 210 (272)
T ss_dssp TS-GGCEEEEEEE-SS--TTSTTTTS---CHHHHHHHHHHC
T ss_pred hc-CCCEEEEEeCCcccCCCcccccchhhHhHHHHHHHHHH
Confidence 11 889999999987642 2233 66777777665
No 127
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=54.28 E-value=29 Score=28.69 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=40.4
Q ss_pred CeEEEEEECCCchHHHH--HHHHHHHHHhcCCCcEEE------eCCCCCcCCCCCCCeEEEEee
Q 015866 7 NKLLILYASQTGNALDA--AERIGRESERRGCPVVVR------PVDDYDARCLPEEDTVIFVVS 62 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~--A~~l~~~l~~~g~~~~v~------~l~~~~~~~l~~~~~ii~~~s 62 (399)
|+++.+=++.+|-+..+ |+.|.+.+++.|+.+.+- -.+.++.+++...+++|++..
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d 66 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITD 66 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEec
Confidence 67888889999976654 589999999999887632 223444556777888777743
No 128
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=53.99 E-value=39 Score=30.64 Aligned_cols=32 Identities=47% Similarity=0.574 Sum_probs=27.2
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..++|++++|.|+| .+++.+.+.|.+.|++.+
T Consensus 24 ~~l~gk~v~I~G~G--------~vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 24 DSLEGKTVAVQGLG--------KVGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCEEEEECCC--------HHHHHHHHHHHHCCCEEE
Confidence 36899999999987 367888889999999876
No 129
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=53.96 E-value=1.1e+02 Score=29.31 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCC--CcC------CC-CCCCe-EEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDY--DAR------CL-PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~--~~~------~l-~~~~~-ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
...+|++|.+.+.+.|+.+....-.+. |-. -+ ++.+. ||-++-.. ...++...+|-+.|.+...
T Consensus 93 d~ela~~i~~~~~~~g~~~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~--~~~~~~~~~lG~al~~~~~---- 166 (280)
T cd07370 93 DPELAHLIAEEATEHGVKTLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWC--THDIEESRRLGEAIRRAIA---- 166 (280)
T ss_pred CHHHHHHHHHHHHHCCCCeeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecC--CCCHHHHHHHHHHHHHHHH----
Confidence 456899999999989987654321221 111 11 22233 33333222 1456677788888765311
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
-.+++++|+|+||.+.
T Consensus 167 ~~~~~v~iIaSG~lsH 182 (280)
T cd07370 167 ASDRRVALLASGSLSH 182 (280)
T ss_pred hcCCCEEEEEeccccc
Confidence 1568999999998765
No 130
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=53.65 E-value=1.6e+02 Score=25.99 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=28.5
Q ss_pred CCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEec
Q 015866 52 PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL 100 (399)
Q Consensus 52 ~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGl 100 (399)
...|.++|++|-|+ +.-|...+.-++||... -.|+..+|...
T Consensus 85 ~~aD~ivFvtPqYN-~gypA~LKNAlD~lyhe------W~gKPalivSy 126 (199)
T KOG4530|consen 85 LEADSIVFVTPQYN-FGYPAPLKNALDWLYHE------WAGKPALIVSY 126 (199)
T ss_pred hhcceEEEeccccc-CCCchHHHHHHHHhhhh------hcCCceEEEEe
Confidence 35689999999995 45566677778887543 34555555543
No 131
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=53.19 E-value=8.5 Score=39.06 Aligned_cols=121 Identities=17% Similarity=0.026 Sum_probs=78.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCc-EEEeCCCCCcCCCCC-CCeEEEEeecCCCCCCchhHHHHHHHHHhccC-
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPV-VVRPVDDYDARCLPE-EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL- 85 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~-~v~~l~~~~~~~l~~-~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~- 85 (399)
.+|.=+=++|-...+|+-|++.+...-+.. ..+.-+-.++..+.. +-.+++.+-|.-.|.+.+..+.||+|+.+...
T Consensus 360 slVgepi~yp~in~f~k~lH~k~issflvtnaq~pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 360 SLVGEPIMYPEINPFAKLLHQKLISSFLVTNAQFPEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred eeecccccchhhhHHHHHHHhccchHHhcccccChHHHhchhhhheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 456667788888888888887765322111 111111122223333 33566667777778888899999999865411
Q ss_pred --CccccCCceEEEEecCCCCc--hhHHHHHHHHHHHHHhCCCeeecc
Q 015866 86 --SKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 86 --~~~~l~~~~~avfGlGds~y--~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.+....-.++.+.|.|++.= ..|+.+++-+-.+++-+|++-..+
T Consensus 440 lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ge 487 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGE 487 (601)
T ss_pred HHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecc
Confidence 11123345889999888764 368989999989999999887654
No 132
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=53.10 E-value=1.2e+02 Score=30.72 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=55.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------CCCCCeEEEEeecCCCCCCchhHHHHHHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l~~~~~ii~~~sT~g~G~~p~~~~~f~~~ 79 (399)
.-++|.|||.++.++..++.+ ++.|+++.++++..+.+-+ +.+.+.|+++=-++-.|..-.....+...
T Consensus 269 d~~iV~~Gs~~~~a~ea~~~L----~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~a 344 (407)
T PRK09622 269 EVAIVALGTTYESAIVAAKEM----RKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSA 344 (407)
T ss_pred CEEEEEEChhHHHHHHHHHHH----HhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHH
Confidence 457788999888877777665 4568888888776653221 24667778776665555544566666666
Q ss_pred HHhccCCccccCCceE---EEEecCCCCc
Q 015866 80 LLQKSLSKQWLEGVRY---AVFGLGDSGY 105 (399)
Q Consensus 80 L~~~~~~~~~l~~~~~---avfGlGds~y 105 (399)
|..... ..... .++|+|...+
T Consensus 345 l~~~~~-----~~~~~v~~~~~g~gG~~~ 368 (407)
T PRK09622 345 VYQTQG-----TKHPVVSNYIYGLGGRDM 368 (407)
T ss_pred HhccCc-----CCCceEeeeEECCCCCCC
Confidence 643210 01223 6777776666
No 133
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=52.84 E-value=20 Score=28.46 Aligned_cols=55 Identities=15% Similarity=0.368 Sum_probs=36.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-CCCCCCeEEEEeecC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-CLPEEDTVIFVVSTT 64 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-~l~~~~~ii~~~sT~ 64 (399)
+|+++=|+--+|+ .+|+++.+.+.++|+++++....-.... ...++| +|+++|-.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~D-iil~~Pqv 56 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDAD-VVLLGPQV 56 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCC-EEEEChhH
Confidence 3677777777777 6899999999999998765544321111 234566 56665543
No 134
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=52.45 E-value=85 Score=30.17 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC-CCC----CeEEEEeecCCCCCC-chhHHHHHHHHHhccCCc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR------CL-PEE----DTVIFVVSTTGQGDT-PDSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l-~~~----~~ii~~~sT~g~G~~-p~~~~~f~~~L~~~~~~~ 87 (399)
...+|+.|.+.+.+.|+++....--.+|-. -+ +.. .+|=+..-+.....+ +....+|=+.|.+...
T Consensus 97 ~~~lA~~i~~~l~~~gid~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~-- 174 (278)
T PRK13364 97 DTELSWHIIESLVEEEFDITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIA-- 174 (278)
T ss_pred CHHHHHHHHHHHHHcCCCeecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHH--
Confidence 567999999999999998754422222211 11 122 233333333322222 4445556666654310
Q ss_pred cccCCceEEEEecCCCCc
Q 015866 88 QWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y 105 (399)
..-.+++++|+|+|+.+.
T Consensus 175 ~~~~d~rV~iIaSG~LSH 192 (278)
T PRK13364 175 SWPSDERVVVIGTGGLSH 192 (278)
T ss_pred hcCCCCCEEEEEeCcccc
Confidence 011468999999998765
No 135
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=51.99 E-value=80 Score=32.66 Aligned_cols=102 Identities=25% Similarity=0.238 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCCcEEE-eCC-CCCcCCC-CCCCeEEEEeecCCC------CC-C--chhHHHHHHHHHhccCC---
Q 015866 22 DAAERIGRESERRGCPVVVR-PVD-DYDARCL-PEEDTVIFVVSTTGQ------GD-T--PDSMKVFWRFLLQKSLS--- 86 (399)
Q Consensus 22 ~~A~~l~~~l~~~g~~~~v~-~l~-~~~~~~l-~~~~~ii~~~sT~g~------G~-~--p~~~~~f~~~L~~~~~~--- 86 (399)
.++++-.+.|.+.|+++.+. .+. ++..++| ..++.+++++.++.- |. . -..|..|+..+......
T Consensus 174 ~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~ 253 (457)
T COG0493 174 DILDRRLELLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFA 253 (457)
T ss_pred hHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccc
Confidence 45666677788888655432 233 5555555 467889998888731 11 1 12466788777644221
Q ss_pred ---ccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 87 ---KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 87 ---~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
...-+++++.|+|.||+.= ........+||+.+....
T Consensus 254 ~~~~~~~~gk~vvVIGgG~Ta~--------D~~~t~~r~Ga~~v~~~~ 293 (457)
T COG0493 254 EDRTPPAKGKRVVVIGGGDTAM--------DCAGTALRLGAKSVTCFY 293 (457)
T ss_pred cccCCCCCCCeEEEECCCCCHH--------HHHHHHhhcCCeEEEEec
Confidence 1123469999999998852 222445577998776443
No 136
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.61 E-value=69 Score=27.59 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-----CCCCCeEEEEeecCCCCCCchhHHHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-----LPEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-----l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L 80 (399)
+.+++|.=--+-|.... |+-+++.|+..|++|....+-.. +++ +.+.-.+|.+||++| ..-..+....+.|
T Consensus 12 rprvlvak~GlDgHd~g-akvia~~l~d~GfeVi~~g~~~t-p~e~v~aA~~~dv~vIgvSsl~g--~h~~l~~~lve~l 87 (143)
T COG2185 12 RPRVLVAKLGLDGHDRG-AKVIARALADAGFEVINLGLFQT-PEEAVRAAVEEDVDVIGVSSLDG--GHLTLVPGLVEAL 87 (143)
T ss_pred CceEEEeccCccccccc-hHHHHHHHHhCCceEEecCCcCC-HHHHHHHHHhcCCCEEEEEeccc--hHHHHHHHHHHHH
Confidence 34444443335565543 67788888889998765544432 222 234446777888874 3345677888888
Q ss_pred HhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 81 LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 81 ~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
.+.... ...|++-|.-.-+. ...|+++|..+++..+
T Consensus 88 re~G~~-------~i~v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 88 REAGVE-------DILVVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHhCCc-------ceEEeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 765321 12245545433222 3568889998888654
No 137
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=51.58 E-value=83 Score=29.68 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEe----C-CC----CCc---CC--CCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 19 NALDAAERIGRESERRGCPVVVRP----V-DD----YDA---RC--LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 19 ~te~~A~~l~~~l~~~g~~~~v~~----l-~~----~~~---~~--l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
....+|+.|.+.+.+.|+++...+ . .+ +|- .. +.....||.++.. .-..++...+|-+.|.+..
T Consensus 78 ~d~ela~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~pvV~is~~--~~~~~~~~~~lG~aL~~~~ 155 (256)
T cd07952 78 NDRELANEIYKSARADGIPVLGINFATSSGDNSDFPLDWGELIPLSFLKKRPIVLITPP--RLLPREELVEFGRALGKAL 155 (256)
T ss_pred CCHHHHHHHHHHHHHcCCceeeccchhhccccCCCCCCccccccHhhCCCCCeEEEccc--cCCCHHHHHHHHHHHHHHH
Confidence 467899999999998888765433 0 00 110 00 1122245544432 2225666777777775531
Q ss_pred CCccccCCceEEEEecCCCCc
Q 015866 85 LSKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y 105 (399)
. =.+.+++|+|+||-+.
T Consensus 156 -~---~~~~~vliIaSGdlSH 172 (256)
T cd07952 156 -E---GYEKRVAVIISADHAH 172 (256)
T ss_pred -H---hcCCcEEEEEecCccc
Confidence 0 1367899999997553
No 138
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=51.21 E-value=35 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.485 Sum_probs=28.1
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecC--CCcccccCCEEEEccC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPS 274 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~--~~~~Y~~GD~l~I~P~ 274 (399)
+|++.+.+++ +++++.|.+++ ..+.|.||.++.|.-.
T Consensus 3 ~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 3 KVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 6788888875 58889999883 3478999999999776
No 139
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=51.02 E-value=1e+02 Score=29.61 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC-CCCC---e-EE-EEeecCCCC-CCchhHHHHHHHHHhccCC
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR------CL-PEED---T-VI-FVVSTTGQG-DTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l-~~~~---~-ii-~~~sT~g~G-~~p~~~~~f~~~L~~~~~~ 86 (399)
...+|+.|++.+.+.|+++...+--.+|-. -+ ++.+ . || +.+.+.... ..|....+|=+.|.+.--
T Consensus 97 ~~~LA~~i~~~~~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~- 175 (277)
T cd07364 97 HPDLAWHIAQSLILDDFDMTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVE- 175 (277)
T ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHH-
Confidence 678999999999999998764331122211 01 1111 1 22 222222222 233444555555644310
Q ss_pred ccccCCceEEEEecCCCCc
Q 015866 87 KQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~y 105 (399)
..-+..+++|+|+|+.+.
T Consensus 176 -~~~rd~rV~iIaSG~lSH 193 (277)
T cd07364 176 -SYDEDLKVAIWGTGGMSH 193 (277)
T ss_pred -hcCcCCCEEEEecCcccc
Confidence 011567899999998775
No 140
>PRK08250 glutamine amidotransferase; Provisional
Probab=50.00 E-value=1.2e+02 Score=28.13 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=36.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC--cCCCCCCCeEEEEeecCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVSTTG 65 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~--~~~l~~~~~ii~~~sT~g 65 (399)
|+++|+.....-....++..+ +++|+++++..+..-+ +.++.+++.+|+..+..+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~----~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~ 57 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWA----ENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQS 57 (235)
T ss_pred CeEEEEecCCCCCchHHHHHH----HHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCC
Confidence 468888888777777776666 4478888877765422 224556888777666543
No 141
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.95 E-value=2.5e+02 Score=27.15 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=79.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-cCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+.. .++ + .+.+.|++-.|--
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~ 111 (284)
T PRK14190 32 VPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIE 111 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 456788888888889999999999999999999999887532 111 1 2234566665522
Q ss_pred ---------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 65 ---------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
| .+-.|-++...++.|+.... .++|+++.|+|=+ .-.++=+..+|.+.
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~i---~l~Gk~vvViGrS-------~iVG~Pla~lL~~~ 181 (284)
T PRK14190 112 RISPEKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYNI---DISGKHVVVVGRS-------NIVGKPVGQLLLNE 181 (284)
T ss_pred cCCccccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcCC---CCCCCEEEEECCC-------CccHHHHHHHHHHC
Confidence 1 11246677777777766543 5899999999954 33678888899888
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
||+..
T Consensus 182 ~atVt 186 (284)
T PRK14190 182 NATVT 186 (284)
T ss_pred CCEEE
Confidence 98874
No 142
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=49.92 E-value=18 Score=30.44 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=29.6
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
+++.|....|-+|.++..+++.|.++|++++++....
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3445788899999999999999999999999986654
No 143
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.79 E-value=2.5e+02 Score=27.12 Aligned_cols=112 Identities=20% Similarity=0.204 Sum_probs=79.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+- +.++ | .+.+.|++-.|--
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~ 109 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLD 109 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 45688888888889999999999999999999999888543 2111 1 2234555554421
Q ss_pred ---------------------CC-C-CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh
Q 015866 65 ---------------------GQ-G-DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 65 ---------------------g~-G-~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~ 121 (399)
|+ + -.|-.+...++.|+.... .++|+++.|+|-+ +-.++=+..+|.+
T Consensus 110 ~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~~i---~l~Gk~vvViGrS-------~iVGkPla~lL~~ 179 (282)
T PRK14182 110 AISPAKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEARV---DPKGKRALVVGRS-------NIVGKPMAMMLLE 179 (282)
T ss_pred ccCcccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHHH
Confidence 11 1 246677777777766544 5899999999954 3467888889988
Q ss_pred CCCeee
Q 015866 122 LGATAV 127 (399)
Q Consensus 122 lGa~~~ 127 (399)
.||+..
T Consensus 180 ~~AtVt 185 (282)
T PRK14182 180 RHATVT 185 (282)
T ss_pred CCCEEE
Confidence 888764
No 144
>PLN02928 oxidoreductase family protein
Probab=49.77 E-value=47 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=27.7
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| ..|+.+.++|+.+|++.++
T Consensus 156 ~l~gktvGIiG~G--------~IG~~vA~~l~afG~~V~~ 187 (347)
T PLN02928 156 TLFGKTVFILGYG--------AIGIELAKRLRPFGVKLLA 187 (347)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHhhCCCEEEE
Confidence 5889999999976 5789999999999997754
No 145
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=49.72 E-value=20 Score=30.34 Aligned_cols=61 Identities=16% Similarity=0.024 Sum_probs=43.6
Q ss_pred HhcccCCCCCcHHHHHHHHHhcCCH----------HHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhccc
Q 015866 326 LTMDVTSASPRRYFFEVMSYFATAE----------HEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYI 388 (399)
Q Consensus 326 ~~lDl~~~~p~~~~l~~La~~a~d~----------~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~ 388 (399)
.||+-.+.-|++.+++.|.+...+. -||.+|.+|+. --.+|.+.+..=...++|++.-|..
T Consensus 47 efL~~~~~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~--~~p~~~~~l~~I~~r~vDL~~~f~~ 117 (130)
T PF11074_consen 47 EFLADPGEDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAE--LFPDYAEKLNSIIERTVDLLDPFKN 117 (130)
T ss_pred HHhccCCCCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555433389999999999887766 79999999986 3445666555445677888776554
No 146
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=49.50 E-value=39 Score=32.35 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=36.7
Q ss_pred CeEEEEEECCCchH---HHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC--CCCCeEEEEe
Q 015866 7 NKLLILYASQTGNA---LDAAERIGRESERRGCPVVVRPVDDYDARCL--PEEDTVIFVV 61 (399)
Q Consensus 7 ~~v~IlY~S~tG~t---e~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l--~~~~~ii~~~ 61 (399)
++|.|++|+.+=.= -.-++.|.+.|++.|+++.+++.++.....+ .+.+.++..+
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~ 64 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNAL 64 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEec
Confidence 47888887654322 2356899999999999999998775433322 2456555553
No 147
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.46 E-value=2.6e+02 Score=27.22 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=75.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCCC----------CCCCeEEEEeecCC---------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----------PEEDTVIFVVSTTG--------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~l----------~~~~~ii~~~sT~g--------- 65 (399)
.+++.|+....---+..+++...+.+++.|++++++.+.+. +.+++ .+.+.|++-.|--.
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 111 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLH 111 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 35688888888889999999999999999999999988532 21111 12234555444211
Q ss_pred --------CC---------------CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 66 --------QG---------------DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 66 --------~G---------------~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
+| -.|-.+...++.|+.... .+.|+++.|+|-+ +-.++=+..+|.+.
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvVIGrS-------~iVGkPla~lL~~~ 181 (297)
T PRK14186 112 AIDPDKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQI---DIAGKKAVVVGRS-------ILVGKPLALMLLAA 181 (297)
T ss_pred ccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHHHHC
Confidence 11 124456666666655433 5889999999853 34678888888888
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
||+..
T Consensus 182 ~atVt 186 (297)
T PRK14186 182 NATVT 186 (297)
T ss_pred CCEEE
Confidence 88773
No 148
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.00 E-value=2.6e+02 Score=27.03 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=77.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+. +.++ | ++.+.|++-.|--
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 109 (282)
T PRK14166 30 ESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILE 109 (282)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 45688888888889999999999999999999999988642 2111 1 1223344433311
Q ss_pred ---------------------C--CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh
Q 015866 65 ---------------------G--QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 65 ---------------------g--~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~ 121 (399)
| .+-.|-++...++.|+.... .+.|+++.|+|-+ .-.+|=+..+|.+
T Consensus 110 ~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i---~l~Gk~vvVvGrS-------~iVGkPla~lL~~ 179 (282)
T PRK14166 110 SIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI---DLEGKDAVIIGAS-------NIVGRPMATMLLN 179 (282)
T ss_pred ccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHHH
Confidence 1 12246667777777765543 5899999999954 3357888888888
Q ss_pred CCCeee
Q 015866 122 LGATAV 127 (399)
Q Consensus 122 lGa~~~ 127 (399)
.||+..
T Consensus 180 ~~atVt 185 (282)
T PRK14166 180 AGATVS 185 (282)
T ss_pred CCCEEE
Confidence 888774
No 149
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=48.96 E-value=45 Score=26.79 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=26.4
Q ss_pred CeEEEEEECCCchHHHH--HHHHHHHHHhcCCCcEEEeCCC
Q 015866 7 NKLLILYASQTGNALDA--AERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~--A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
|.|.|+++|.||+.+-- -+++...|...+++-+.+|+..
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~ 41 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM 41 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC
Confidence 46899999999997654 4577788888888777777664
No 150
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=48.68 E-value=76 Score=28.61 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCCC----------cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCc
Q 015866 24 AERIGRESERRGCPVVVRPVDDYD----------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGV 93 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~v~~l~~~~----------~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~ 93 (399)
+..+.+.|++.|+.+..+.+-+.. ...+..++.|||.++. .++.|++.+.... ...+.+.
T Consensus 10 ~~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~--------av~~~~~~~~~~~--~~~~~~~ 79 (239)
T cd06578 10 ADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPN--------AVEAFFEALEELG--LRALAGL 79 (239)
T ss_pred hHHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHH--------HHHHHHHHHHhhC--CccccCC
Confidence 677888888899887655432221 1123456766666552 4677887776432 1245677
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 94 RYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 94 ~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
++.+.| +...+.|++.|.+..+.
T Consensus 80 ~~~avG-------------~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 80 KIAAVG-------------PKTAEALREAGLTADFV 102 (239)
T ss_pred EEEEEC-------------HHHHHHHHHcCCCceeC
Confidence 777666 45667788889877653
No 151
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.98 E-value=69 Score=27.06 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=62.1
Q ss_pred eEEEEEECCCchHHHHHHHHHH-HHHhcCCCcEEEeCCCCCcCCC----CCCCe-EEEEeecCCCCCCchhHHHHHHHHH
Q 015866 8 KLLILYASQTGNALDAAERIGR-ESERRGCPVVVRPVDDYDARCL----PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~-~l~~~g~~~~v~~l~~~~~~~l----~~~~~-ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
++.|+-+...|..-.+...|.. .|+..||+|.-...+ .+++++ .+.+. +|.+|++. +...+.+....+.|+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~--~~~~~~~~~~~~~L~ 78 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA--GGHLTLVPALRKELD 78 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch--hhhHHHHHHHHHHHH
Confidence 3567777777777777665554 456789866433333 223332 23333 55555555 566678999999986
Q ss_pred hccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 82 ~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
... +.. +-|+.-|.- + +.-.+.|+++|...++..+.
T Consensus 79 ~~g-----~~~--i~vivGG~~--~------~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 79 KLG-----RPD--ILVVVGGVI--P------PQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred hcC-----CCC--CEEEEeCCC--C------hHhHHHHHHCCCCEEECCCC
Confidence 642 222 334433321 1 22234588999999887654
No 152
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=47.74 E-value=2.7e+02 Score=28.16 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=53.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc---C---C-CCCCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---R---C-LPEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~---~---~-l~~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
..-+.|.|||.+|+++...+.+. +.|.++-++.+..+-+ + + +.+.+.|+++=-++..|..-.-......
T Consensus 262 Ae~viV~~GS~~~~~keav~~LR----~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~a 337 (394)
T PRK08367 262 AEIIFVTMGSLAGTLKEFVDKLR----EEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASA 337 (394)
T ss_pred CCEEEEEeCccHHHHHHHHHHHH----hcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHH
Confidence 34578889999999998887664 4577776666654421 1 1 3467777777555433432223444444
Q ss_pred HHHhccCCccccCCceEEEEecCCCCc
Q 015866 79 FLLQKSLSKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 79 ~L~~~~~~~~~l~~~~~avfGlGds~y 105 (399)
.|.... .-..+.-.+.|+|-+..
T Consensus 338 al~~~~----~~~~v~~~~~glgg~~~ 360 (394)
T PRK08367 338 ALVNES----EKPKILDFIIGLGGRDV 360 (394)
T ss_pred HHhccC----CCCeEEEEEeCCCCCCC
Confidence 442211 01123467888887765
No 153
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=47.19 E-value=36 Score=33.17 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=38.0
Q ss_pred CCeEEEEEECCCchH-HHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCC---CCeEEEE
Q 015866 6 RNKLLILYASQTGNA-LDAAERIGRESERRGCPVVVRPVDDYDARCLPE---EDTVIFV 60 (399)
Q Consensus 6 ~~~v~IlY~S~tG~t-e~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~---~~~ii~~ 60 (399)
.+.+.|+.||.+|.- ..++++|.+.++++|.++.++-+++.+++.|.+ .+..|++
T Consensus 209 a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~eid~fV~~ 267 (307)
T PF01866_consen 209 AKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFPEIDAFVQI 267 (307)
T ss_dssp --EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS---SEEEE-
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCcccCEEEEe
Confidence 578999999998864 567899999999999999999999998877654 4554444
No 154
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=46.94 E-value=31 Score=33.68 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCeEEEEEECCCch-HHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCC--CCe-EEEEee
Q 015866 6 RNKLLILYASQTGN-ALDAAERIGRESERRGCPVVVRPVDDYDARCLPE--EDT-VIFVVS 62 (399)
Q Consensus 6 ~~~v~IlY~S~tG~-te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~--~~~-ii~~~s 62 (399)
.+++.|+.||.+|. ...++++|.+.++++|.+..++.+++.+++.|.+ .|. |++.||
T Consensus 212 A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~iD~fV~~aCP 272 (308)
T TIGR03682 212 AKKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNLDFDAYVNTACP 272 (308)
T ss_pred CCeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcCCcCEEEEccCC
Confidence 46799999999885 5678999999999999999999999998877654 443 333344
No 155
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=46.60 E-value=38 Score=29.84 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 74 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 74 ~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+..++.+.+. .+..+.|+++.|+|. ...+|-+.+.|+.+||+...
T Consensus 7 ~S~~d~i~r~--t~~~l~Gk~vvV~GY--------G~vG~g~A~~lr~~Ga~V~V 51 (162)
T PF00670_consen 7 QSLVDGIMRA--TNLMLAGKRVVVIGY--------GKVGKGIARALRGLGARVTV 51 (162)
T ss_dssp HHHHHHHHHH--H-S--TTSEEEEE----------SHHHHHHHHHHHHTT-EEEE
T ss_pred hhHHHHHHhc--CceeeCCCEEEEeCC--------CcccHHHHHHHhhCCCEEEE
Confidence 4455555433 123689999999994 45789999999999998863
No 156
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=46.40 E-value=1.5e+02 Score=30.27 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=62.7
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC----CCCCCeEEEEeecC-CCCCCchhHHHHHHHHHhc
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC----LPEEDTVIFVVSTT-GQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~----l~~~~~ii~~~sT~-g~G~~p~~~~~f~~~L~~~ 83 (399)
++|+|.+..-... =..+.+.|+++|++++....++-+..- -..|+.+|+..++. +-|.- =+.+.+++.+.
T Consensus 1 ~LVllD~~~~~~~--yS~Ff~~L~~rg~~l~~~~~~d~~l~L~~~ge~~YD~LIif~~~~k~~g~~-ls~~~ll~Fvd-- 75 (423)
T PF03345_consen 1 TLVLLDNRAIKET--YSTFFNSLKERGYELTFKSADDESLSLFKYGERLYDHLIIFPPSVKEFGGS-LSPKTLLDFVD-- 75 (423)
T ss_pred CEEEecCccchhh--HHHHHHHHHhCCCEEEEecCCCCCcchhhCChhhcceEEEeCCcccccCCC-CCHHHHHHHHh--
Confidence 3677777754333 445667899999999988888733221 13578888887664 22221 12445555553
Q ss_pred cCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccc
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~ 130 (399)
.|-.+-|.+..+ ..+..+...+.++|... .|.
T Consensus 76 -------~GgNilv~~s~~-------~~~~~ir~~~~E~gi~~-~~~ 107 (423)
T PF03345_consen 76 -------NGGNILVAGSSD-------AIPDSIREFANELGIEF-DPK 107 (423)
T ss_pred -------CCCcEEEEeCCC-------cCcHHHHHHHHHCCeEE-CCC
Confidence 355667776543 14677778888888765 444
No 157
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=46.07 E-value=64 Score=35.01 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCCCCc-----------CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccC
Q 015866 23 AAERIGRESERRGCPVVVRPVDDYDA-----------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLE 91 (399)
Q Consensus 23 ~A~~l~~~l~~~g~~~~v~~l~~~~~-----------~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~ 91 (399)
-+..+++.|++.|+.+..+.+=++.+ .++..++.|||.|+. ..+.|+++|... .+.
T Consensus 14 qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~n--------AV~~~~~~l~~~-----~~~ 80 (656)
T PRK06975 14 QSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPN--------AVDRALARLDAI-----WPH 80 (656)
T ss_pred HHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHH--------HHHHHHHHHHhh-----Ccc
Confidence 44566667777898876554322211 346688887777653 255678887543 134
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 92 GVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 92 ~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
+.+++++|- .-.+.|++.|...
T Consensus 81 ~~~i~AVG~-------------~Ta~aL~~~Gi~~ 102 (656)
T PRK06975 81 ALPVAVVGP-------------GSVAALARHGIAA 102 (656)
T ss_pred CCeEEEECH-------------HHHHHHHHcCCCC
Confidence 667777762 3344566778653
No 158
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=45.78 E-value=55 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=32.0
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
.-+|++--|+++.++..+.+.+.+.|..+.++.+++.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~ 39 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM 39 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 3469999999999999999999999988888888853
No 159
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=45.68 E-value=71 Score=33.20 Aligned_cols=84 Identities=10% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEe---CCCC-----CcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCC
Q 015866 21 LDAAERIGRESERRGCPVVVRP---VDDY-----DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEG 92 (399)
Q Consensus 21 e~~A~~l~~~l~~~g~~~~v~~---l~~~-----~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~ 92 (399)
+.-+..+++.|++.|-++..+. +... ....+.+|+-+||-++ - ..+.|+++|.....+-..|.
T Consensus 260 ~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~~~~l~~l~~ydwlvFTS~-n-------gV~~Ff~~l~~~~~D~R~l~- 330 (474)
T PRK07168 260 TNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLTLEQINEIFNVNRLVFCSA-E-------SVEILMQSCSKYKKDIRSLQ- 330 (474)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccEEeeCCCCcHHHHHHhccCCEEEEcCH-H-------HHHHHHHHHHHcCCChHHhC-
Confidence 4456677778888886543221 1111 1223567886666443 2 47789999987654434555
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 93 VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 93 ~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
.++|+.| ..-.+.|++.|...
T Consensus 331 ~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 331 AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 6888887 35567788888655
No 160
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.18 E-value=2.9e+02 Score=26.65 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=77.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-CC-------C---CCCCeEEEEeecCC---------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-RC-------L---PEEDTVIFVVSTTG--------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~-~~-------l---~~~~~ii~~~sT~g--------- 65 (399)
..++.|+....---+..+++...+.+++.|+.++++.+.+... ++ | ++.+.|++-.|--.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~ 111 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILE 111 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4578888888888999999999999999999999998864321 11 1 12234444444221
Q ss_pred -----------------------CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 66 -----------------------QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 66 -----------------------~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
.+-.|-+....++.|+.... .++|+++.|+|-| .-+++-+...|.+.
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i---~l~Gk~vvVIGrs-------~~VG~pla~lL~~~ 181 (286)
T PRK14175 112 AINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADI---DLEGKNAVVIGRS-------HIVGQPVSKLLLQK 181 (286)
T ss_pred ccCcccCcccCCccchHhHhcCCCCCCCCcHHHHHHHHHHcCC---CCCCCEEEEECCC-------chhHHHHHHHHHHC
Confidence 12235566666777765433 5899999999965 33688889999999
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
||+..
T Consensus 182 gatVt 186 (286)
T PRK14175 182 NASVT 186 (286)
T ss_pred CCeEE
Confidence 98875
No 161
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=45.14 E-value=1.3e+02 Score=28.75 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC-CC----CCeEEEEeecC-CCCCCchhHHHHHHHHHhccCCc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR------CL-PE----EDTVIFVVSTT-GQGDTPDSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l-~~----~~~ii~~~sT~-g~G~~p~~~~~f~~~L~~~~~~~ 87 (399)
...+|+.|.+.+.+.|+++....--.+|-. -+ +. ..+|=+...+. .-.-.+....+|=+.|.+..-
T Consensus 97 ~~~LA~~i~~~~~~~g~d~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~-- 174 (276)
T cd07949 97 DPELSWHLIESLVEDEFDITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIE-- 174 (276)
T ss_pred CHHHHHHHHHHHHHcCCCeeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHH--
Confidence 678999999999999987653321112111 01 12 22333333332 122233444566666654310
Q ss_pred ccc-CCceEEEEecCCCCc
Q 015866 88 QWL-EGVRYAVFGLGDSGY 105 (399)
Q Consensus 88 ~~l-~~~~~avfGlGds~y 105 (399)
.+ ++++++|+|+|+-+.
T Consensus 175 -~~~~d~rv~iiaSG~lSH 192 (276)
T cd07949 175 -SYPEDLRVVVLGTGGLSH 192 (276)
T ss_pred -hcCcCCCEEEEEeCcccc
Confidence 12 467999999998765
No 162
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=44.63 E-value=29 Score=34.12 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.1
Q ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 7 NKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 7 ~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
|+|++++-+. .|-+|.++..+++.|.++|++|+++...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 5677777664 5899999999999999999999988764
No 163
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=44.12 E-value=1.1e+02 Score=29.28 Aligned_cols=83 Identities=16% Similarity=0.066 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEe---CCCCCc---CCCC--------CCCeEEEE--eecCCCCCCchhHHHHHHHHHhc
Q 015866 20 ALDAAERIGRESERRGCPVVVRP---VDDYDA---RCLP--------EEDTVIFV--VSTTGQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~---l~~~~~---~~l~--------~~~~ii~~--~sT~g~G~~p~~~~~f~~~L~~~ 83 (399)
...+|+.|++.+.+.|+++.... +|.-.. .-+. ....|=++ ++.. -..++....+|=+.|.+.
T Consensus 94 ~~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~-p~~~~~~~~~lG~al~~a 172 (277)
T cd07368 94 NEPLAHHIMQHGLEYGIDWAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVD-PFITSWRAHELGRVIGAA 172 (277)
T ss_pred CHHHHHHHHHHHHHcCCCEeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccC-CCCCHHHHHHHHHHHHHH
Confidence 67899999999999998765332 222110 0111 11122222 3333 334555666677777542
Q ss_pred cCCccccCCceEEEEecCCCCc
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y 105 (399)
. ...+++++++|+|+|+-+.
T Consensus 173 i--~~~~~d~rVliIaSG~LSH 192 (277)
T cd07368 173 V--EAWQGDERVAIIGSGGISH 192 (277)
T ss_pred H--HhcCCCCCEEEEEcCcccC
Confidence 1 0124688999999998875
No 164
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=44.08 E-value=2.1e+02 Score=27.68 Aligned_cols=132 Identities=13% Similarity=0.002 Sum_probs=67.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHh---cCCCcEEEeCCCCC-cC---------CCCCCCeEEEEe-ecCCCCCCchh
Q 015866 7 NKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYD-AR---------CLPEEDTVIFVV-STTGQGDTPDS 72 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~---~g~~~~v~~l~~~~-~~---------~l~~~~~ii~~~-sT~g~G~~p~~ 72 (399)
++++++||...+--+..++.+.+.+.. ..+....++..+.+ +. .+.....+|++- +.+..+...+.
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~~~~~~~~~~t~pff~~~rlVvv~~~~~~~~~~~~~ 80 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQAIQALNEAMTPPFGSGGRLVWLKNSPLCQGCSEEL 80 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchHHHHHHHHhcCCCCCCCceEEEEeCchhhccCCHHH
Confidence 468999999999999999999877632 23455555555443 11 123334444444 33323333344
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHH
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l 152 (399)
...+.++|.+. ..-.+-||-..+. . ...+++.+.+++.|...-+. ....- ....+..|..+.
T Consensus 81 ~~~L~~~l~~~-------~~~~~li~~~~~~-~----d~r~k~~k~l~k~~~~~~~~--~~~~~----~~~~l~~~i~~~ 142 (326)
T PRK07452 81 LAELERTLPLI-------PENTHLLLTNTKK-P----DGRLKSTKLLQKLAEEKEFS--LIPPW----DTEGLKQLVERT 142 (326)
T ss_pred HHHHHHHHcCC-------CCCcEEEEEeCCC-c----chHHHHHHHHHHceeEEEec--CCCcc----cHHHHHHHHHHH
Confidence 55677777431 2234555532211 0 12244556666655432221 11110 123477887765
Q ss_pred HHHH
Q 015866 153 WRRL 156 (399)
Q Consensus 153 ~~~l 156 (399)
.+..
T Consensus 143 ~~~~ 146 (326)
T PRK07452 143 AQEL 146 (326)
T ss_pred HHHc
Confidence 5443
No 165
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=43.99 E-value=1.2e+02 Score=28.75 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCC----------cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYD----------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~----------~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
.+.-+..+++.|++.|.++..+.+=++. ...|.+++.+||.|++ ..+.|..++ .. ..
T Consensus 26 p~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~N--------AV~~~~~~~-~~----~~ 92 (266)
T PRK08811 26 PSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPA--------AVRAAHRLL-PL----QR 92 (266)
T ss_pred CHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHH--------HHHHHHHHh-cc----cC
Confidence 3456677888888899887544441111 1235678877776642 244555433 21 13
Q ss_pred cCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 90 l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
+.+.+++.+| +.-.+.|++.|....
T Consensus 93 ~~~~~~~AVG-------------~~TA~aL~~~G~~~~ 117 (266)
T PRK08811 93 PARAHWLSVG-------------EGTARALQACGIDEV 117 (266)
T ss_pred ccCCeEEEEC-------------HHHHHHHHHcCCCce
Confidence 5677777776 344556777887654
No 166
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=43.77 E-value=74 Score=34.24 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=58.0
Q ss_pred EECCCc----hHHHHHHHHHHHHHhcCCC-cEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhc
Q 015866 13 YASQTG----NALDAAERIGRESERRGCP-VVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 13 Y~S~tG----~te~~A~~l~~~l~~~g~~-~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~ 83 (399)
-||-+. ++.++|.++-..|.+.|+. ++++.+.++.-.-=-.|+.+-+.++|-..|. |+..++|++.+...
T Consensus 152 vGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGt-Pedfk~fVD~aH~~ 226 (628)
T COG0296 152 VGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGT-PEDFKALVDAAHQA 226 (628)
T ss_pred eeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCC-HHHHHHHHHHHHHc
Confidence 477777 8899999999999999997 6899999986554457999999999987776 66799999998654
No 167
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=43.55 E-value=45 Score=32.79 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=45.5
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------CCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
++|-|||+.+.+.+.|+.|. +.|++++++++..+.+-+ +.+.+.||++=-.+-.|..-. .+.++|.
T Consensus 205 ~iva~G~~~~~a~eAa~~L~----~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~---~la~~l~ 277 (327)
T PRK09212 205 TIVTFSIQVKLALEAAELLE----KEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGA---EIAALIM 277 (327)
T ss_pred EEEEccHHHHHHHHHHHHHH----hcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHH---HHHHHHH
Confidence 55669999988888887764 469999999988775443 235667777766665555443 4555554
Q ss_pred h
Q 015866 82 Q 82 (399)
Q Consensus 82 ~ 82 (399)
+
T Consensus 278 ~ 278 (327)
T PRK09212 278 K 278 (327)
T ss_pred H
Confidence 4
No 168
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=43.40 E-value=1.2e+02 Score=24.13 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCC
Q 015866 24 AERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS 103 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds 103 (399)
++.|...|.+.|+... ++..+.|++|+-|.|. -...-..+...+..+.+.. -.+.++.|-||--.
T Consensus 16 se~i~~~l~~~G~~~~---------~~~e~AD~iiiNTC~V-~~~Ae~k~~~~i~~l~~~~-----~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 16 SERIASILQAAGYEIV---------DDPEEADVIIINTCTV-RESAEQKSRNRIRKLKKLK-----KPGAKIVVTGCMAQ 80 (98)
T ss_pred HHHHHHHHHhcCCeee---------cccccCCEEEEEcCCC-CcHHHHHHHHHHHHHHHhc-----CCCCEEEEEeCccc
Confidence 4677778888887432 1224678899888887 3343334444444444332 15689999998544
Q ss_pred Cc
Q 015866 104 GY 105 (399)
Q Consensus 104 ~y 105 (399)
.+
T Consensus 81 ~~ 82 (98)
T PF00919_consen 81 RY 82 (98)
T ss_pred cC
Confidence 43
No 169
>PRK11538 ribosome-associated protein; Provisional
Probab=43.01 E-value=1.8e+02 Score=23.57 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHH-hcCCCcEEEeCCCCCcCCCCCCCeEEEEeecC
Q 015866 20 ALDAAERIGRESE-RRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 20 te~~A~~l~~~l~-~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~ 64 (399)
++.+++.+++.|. ++|-++.++|+.+.. .+ .+.+|+++++.
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~~--~~--~Dy~VIatg~S 44 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGKS--SI--TDCMIICTGTS 44 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCC--cc--cCEEEEEEeCC
Confidence 4678888888887 457789999988753 22 36777777665
No 170
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=42.98 E-value=1.3e+02 Score=28.14 Aligned_cols=81 Identities=27% Similarity=0.380 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCcEEEeCCC-----CCcC------CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCc
Q 015866 25 ERIGRESERRGCPVVVRPVDD-----YDAR------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGV 93 (399)
Q Consensus 25 ~~l~~~l~~~g~~~~v~~l~~-----~~~~------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~ 93 (399)
..|.+.|.++|+.+..+.+-+ ++.. .....+.|+|-+|. .++.|++.+...... .+.++
T Consensus 136 ~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~--------~v~~~~~~~~~~~~~--~~~~~ 205 (248)
T COG1587 136 EVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSS--------AVRALLALAPESGIE--FLERK 205 (248)
T ss_pred HHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHH--------HHHHHHHHccccchh--HhhCc
Confidence 667777888898765444322 1111 12345655555554 478888887543211 34567
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 94 RYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 94 ~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+++.+| ....+.++++|.++..
T Consensus 206 ~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 206 RVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred eEEEec-------------HHHHHHHHHcCCccee
Confidence 777777 4566778888987643
No 171
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=42.89 E-value=71 Score=25.20 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=29.5
Q ss_pred EEEEEECCCchHHHH--HHHHHHHHHhcCCCcEEEeCCC
Q 015866 9 LLILYASQTGNALDA--AERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 9 v~IlY~S~tG~te~~--A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
|.|+|.|.+|+.+-. .+++...|...|++.+-+|++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 689999999987644 5678888888998877777763
No 172
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=42.83 E-value=40 Score=26.71 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=34.3
Q ss_pred EEEECCCc--hHHHHHHHHHHHHHhcCCCcEEEe------CCCCCcCCCCCCCeEEEEeec
Q 015866 11 ILYASQTG--NALDAAERIGRESERRGCPVVVRP------VDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 11 IlY~S~tG--~te~~A~~l~~~l~~~g~~~~v~~------l~~~~~~~l~~~~~ii~~~sT 63 (399)
++-+.-+| ++-..|+.|.+.++++|+++.+-- .+.++.+++...+++|++.-+
T Consensus 3 ~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 3 AVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADV 63 (96)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCC
Confidence 33444444 566678999999999999876431 233444556677877776544
No 173
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=42.78 E-value=43 Score=28.13 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=27.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.++++++.|+|.| ++++.+-..|...|++.+.
T Consensus 9 ~l~~~~vlviGaG--------g~ar~v~~~L~~~g~~~i~ 40 (135)
T PF01488_consen 9 DLKGKRVLVIGAG--------GAARAVAAALAALGAKEIT 40 (135)
T ss_dssp TGTTSEEEEESSS--------HHHHHHHHHHHHTTSSEEE
T ss_pred CcCCCEEEEECCH--------HHHHHHHHHHHHcCCCEEE
Confidence 5889999999986 6889999999999999763
No 174
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.73 E-value=1.8e+02 Score=23.50 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=39.1
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC---CcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~---~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.+|| .|.+..+|+.++..+...|..+...+-.+. ....+.+.+++|++ |-. |..+ ...+..+++++
T Consensus 4 ~i~G--~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~i-S~s--G~t~-~~~~~~~~a~~ 72 (128)
T cd05014 4 VVTG--VGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAI-SNS--GETD-ELLNLLPHLKR 72 (128)
T ss_pred EEEe--CcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEE-eCC--CCCH-HHHHHHHHHHH
Confidence 4455 468889999999999888887765532221 11234445554444 443 4444 45566666544
No 175
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=42.62 E-value=79 Score=31.56 Aligned_cols=80 Identities=20% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-----------CC--CCCCeEEEEeecCCCCCCchh
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-----------CL--PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-----------~l--~~~~~ii~~~sT~g~G~~p~~ 72 (399)
+++|+|.- + .. |..+++.|++.|..+..+.+=++.+. .+ ..++.+||.|+ + .
T Consensus 11 g~rIlvtr-~--~~----a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~---n-----g 75 (381)
T PRK07239 11 GFTVGVTA-A--RR----AEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTG---I-----G 75 (381)
T ss_pred CcEEEEec-c--CC----HHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeCh---H-----H
Confidence 56677663 2 23 45555666677988765544322111 11 34676666552 2 2
Q ss_pred HHHHHHHHHhccCC---ccccCCceEEEEec
Q 015866 73 MKVFWRFLLQKSLS---KQWLEGVRYAVFGL 100 (399)
Q Consensus 73 ~~~f~~~L~~~~~~---~~~l~~~~~avfGl 100 (399)
.+.|++++...... ...+.+.++++.|-
T Consensus 76 v~~~~~~l~~~~~~~~~~~~l~~~~i~aVG~ 106 (381)
T PRK07239 76 FRGWVEAADGWGLADELLEALSSARLLARGP 106 (381)
T ss_pred HHHHHHHHHHcCChHHHHHHHcCCeEEEECc
Confidence 66788887654321 11357888888773
No 176
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=42.59 E-value=2.9e+02 Score=25.92 Aligned_cols=111 Identities=13% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCeEEEEEECCCchHHHH-HHHHHHHHHhcCCCcEEEeCCCCCcCC--CC--CCCeEEEEeecCCCCCC-chhHHHHHHH
Q 015866 6 RNKLLILYASQTGNALDA-AERIGRESERRGCPVVVRPVDDYDARC--LP--EEDTVIFVVSTTGQGDT-PDSMKVFWRF 79 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~-A~~l~~~l~~~g~~~~v~~l~~~~~~~--l~--~~~~ii~~~sT~g~G~~-p~~~~~f~~~ 79 (399)
|+++.++-+.-.|-.+.. |..++..+.++|.++.++|.|-....- +. ....+-+. . .++. +......++.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~--~--~~~i~~r~fD~Lve~ 76 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIM--D--GDEINTRNFDALVEM 76 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecc--c--CCccchhhHHHHHHH
Confidence 456777777777777766 777888888899999999987543211 11 11122221 1 2222 2233334444
Q ss_pred HHhccCCccccCCceEEEEecCCCCchhHHHH--HHHHHHHHHhCCCeeecc
Q 015866 80 LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFV--AKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 80 L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~--~k~l~~~L~~lGa~~~~~ 129 (399)
+.. .+.. .|+-.|.+++..+... .-.+-+.|.+.|-+.+.-
T Consensus 77 i~~--------~~~d-vIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh 119 (241)
T PRK13886 77 IAS--------TEGD-VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVH 119 (241)
T ss_pred Hhc--------cCCC-EEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEE
Confidence 321 1222 6888998988877653 567788999999887653
No 177
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=42.58 E-value=1.7e+02 Score=29.33 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=40.9
Q ss_pred CchhHHHHHHHHHhccCCccccCC-ceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 69 TPDSMKVFWRFLLQKSLSKQWLEG-VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 69 ~p~~~~~f~~~L~~~~~~~~~l~~-~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
|-.++....+|+... .| +++..+|. +|-|--.+-|.+.+.+++.|++.+.+.-
T Consensus 117 PNQ~~~pl~~~~~~~-------~G~~r~~lvGS---dYv~pre~Nri~r~~l~~~GgevvgE~Y 170 (363)
T PF13433_consen 117 PNQQLLPLIDYLLEN-------FGAKRFYLVGS---DYVYPRESNRIIRDLLEARGGEVVGERY 170 (363)
T ss_dssp GGGTHHHHHHHHHHH-------S--SEEEEEEE---SSHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred chhhHHHHHHHHHhc-------cCCceEEEecC---CccchHHHHHHHHHHHHHcCCEEEEEEE
Confidence 445888999999764 46 99999996 7877777888888999999998876543
No 178
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=42.52 E-value=55 Score=29.53 Aligned_cols=40 Identities=5% Similarity=0.185 Sum_probs=32.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
+++++|+++|-+...+.-...+++.|.+.|+.+.++.+.+
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4589999999977777777788888888898887776654
No 179
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=41.83 E-value=2.3e+02 Score=27.65 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEE-e--CCCCCcCC---CC----CCCeEEEEeecCCCCC-CchhHHHHHHHHHhccCCcc
Q 015866 20 ALDAAERIGRESERRGCPVVVR-P--VDDYDARC---LP----EEDTVIFVVSTTGQGD-TPDSMKVFWRFLLQKSLSKQ 88 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~-~--l~~~~~~~---l~----~~~~ii~~~sT~g~G~-~p~~~~~f~~~L~~~~~~~~ 88 (399)
...+|+.|.+.+...|+++... + +|.-.... |. +..+|=+...+..... .+..+.+|-+.|.+.- .
T Consensus 87 d~eLA~~L~~~~~~~g~d~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~r~~~lG~al~~ai-~-- 163 (310)
T cd07365 87 PRDLAEDLARHVLDSGIDVAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMRRARALGEAVGRFL-A-- 163 (310)
T ss_pred CHHHHHHHHHhhhhcCCChhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHH-H--
Confidence 4678999998888888855322 1 22110000 11 1233333333332222 2335556666665431 1
Q ss_pred ccCCceEEEEecCCCCc
Q 015866 89 WLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y 105 (399)
.+ +++++|+|+||-+.
T Consensus 164 ~~-d~rV~VIaSGdLSH 179 (310)
T cd07365 164 KL-DKRVLFLGSGGLSH 179 (310)
T ss_pred hc-CCCEEEEEcCcccC
Confidence 23 68999999998654
No 180
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=41.32 E-value=2e+02 Score=29.20 Aligned_cols=124 Identities=21% Similarity=0.186 Sum_probs=73.3
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCcc
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQ 88 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~ 88 (399)
|+|+. .-+.+..+|++|++.+++.. ..++..+-++.+.-+||-|...++.+...+.|......
T Consensus 20 v~Iip--tv~C~~~va~~ia~~~~~~~-------------~~~~~vdGvv~l~h~~GC~~~g~d~e~~~rtL~g~a~h-- 82 (396)
T PF04295_consen 20 VLIIP--TVNCSNTVARRIARRFERER-------------LAYPNVDGVVALPHPYGCGQLGEDLELTRRTLAGLARH-- 82 (396)
T ss_pred EEEEe--cccccHHHHHHHHHHHhhhh-------------cccCCCCCeEECCCCCCcCCcchhHHHHHHHHHHHccC--
Confidence 44444 45667788888888877531 13456678999999999999888888777777654211
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCC-CCcccchhhHHHHHHHHH
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP-SGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~-~g~~~~~~~W~~~l~~~l 156 (399)
+.-+ -+-|+|+| .+. .-...+.+.+.+.|.+++. ...+.+... ....+...+|..++.+.+
T Consensus 83 PNvg-gvlvvgLG---CE~--~~~~~l~~~i~~~g~kpv~-~l~iQ~~GGt~~~i~~~~~~~~~l~~~a 144 (396)
T PF04295_consen 83 PNVG-GVLVVGLG---CEN--NQPERLAEAIAERGPKPVE-FLSIQEEGGTEDTIEAGVELARELLEEA 144 (396)
T ss_pred CCee-eEEEEecC---Ccc--CcHHHHHHhhhccCCCceE-EEEEeehhhHHHHHHHHHHHHHHHHHHh
Confidence 1111 26778887 211 1245666677777766653 223322211 112334445666665544
No 181
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=41.13 E-value=46 Score=26.74 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=45.7
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCc
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~ 87 (399)
|+++= +..=+|.-+|+++.+.++++|+++++......... .+.++| +|+.+|- .+..++.+++...
T Consensus 3 Ill~C-~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~D-vill~PQ---------v~~~~~~i~~~~~-- 69 (99)
T cd05565 3 VLVLC-AGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYD-LVILAPQ---------MASYYDELKKDTD-- 69 (99)
T ss_pred EEEEC-CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCC-EEEEcCh---------HHHHHHHHHHHhh--
Confidence 44444 44478899999999999999998876654432222 344566 4444442 4445555554321
Q ss_pred cccCCceEEEEe
Q 015866 88 QWLEGVRYAVFG 99 (399)
Q Consensus 88 ~~l~~~~~avfG 99 (399)
-.|+.++++-
T Consensus 70 --~~~ipv~~I~ 79 (99)
T cd05565 70 --RLGIKLVTTT 79 (99)
T ss_pred --hcCCCEEEeC
Confidence 2466677764
No 182
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=41.05 E-value=41 Score=33.69 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=30.9
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCC---CcEEEeC
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGC---PVVVRPV 43 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~---~~~v~~l 43 (399)
.+|+|+|+.+|..|-=...|+.|++.+.+.+. ++.++|+
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~ 45 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDL 45 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeeh
Confidence 46899999999887789999999999987754 3444443
No 183
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=41.01 E-value=32 Score=32.48 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=37.6
Q ss_pred CCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcC
Q 015866 318 IKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS 361 (399)
Q Consensus 318 ~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s 361 (399)
--|+++|..||++++ .+.++..-|..|-.+.+.|+-|.+|-+
T Consensus 215 e~Lqd~fh~fLEeRG--I~esl~~FL~~ym~~Kd~rEYl~Wlks 256 (263)
T KOG2536|consen 215 EELQDSFHRFLEERG--IKESLASFLHAYMKNKDSREYLRWLKS 256 (263)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 458999999999998 799999999999999999988888754
No 184
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=40.97 E-value=38 Score=33.05 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=27.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.|.|++++|+|+| ..|+.+.++++.+|++.++
T Consensus 142 ~L~gktvGIiG~G--------~IG~~vA~~~~~fgm~V~~ 173 (311)
T PRK08410 142 EIKGKKWGIIGLG--------TIGKRVAKIAQAFGAKVVY 173 (311)
T ss_pred ccCCCEEEEECCC--------HHHHHHHHHHhhcCCEEEE
Confidence 5899999999976 5789999999999998764
No 185
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=40.95 E-value=1.3e+02 Score=27.60 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=37.3
Q ss_pred CCCCHHHHHHH-hcccCCCCCcHHHHHHHHHhcCCHHHHHHH-HhhcCcccHHHHHHHHhcCCCCHHHHhhh
Q 015866 316 VPIKLRTFVEL-TMDVTSASPRRYFFEVMSYFATAEHEKERL-QYFASPEGRDDLYKYNQKERRTVLEVSFG 385 (399)
Q Consensus 316 ~~~tl~~ll~~-~lDl~~~~p~~~~l~~La~~a~d~~ek~~L-~~l~s~~~~~~~~~~~~~~~~tlldvL~~ 385 (399)
.+++=.++|++ ||||+|-+|+.+-++.+..- .+++.+++| .+|... .+|.++.. +-.+|+|.-
T Consensus 20 ~~add~~~lRRv~LDL~G~~PT~eEv~~Fl~d-~~~~kr~~lVd~LL~s---p~y~e~wa---~~W~D~lr~ 84 (208)
T PF07583_consen 20 PPADDATFLRRVYLDLTGLPPTPEEVRAFLAD-PSPDKREKLVDRLLAS---PEYAERWA---RHWLDLLRY 84 (208)
T ss_pred CCCCHHHHHHHHHHHHhCCCcCHHHHHHHHhC-CChhHHHHHHHHHHCC---cHHHHHHH---HHHHHHHcc
Confidence 45666777765 89999988898877766543 234445444 444421 23544442 455566643
No 186
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=40.67 E-value=1.2e+02 Score=27.97 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCCCc------CCCCC-CCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEE
Q 015866 24 AERIGRESERRGCPVVVRPVDDYDA------RCLPE-EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYA 96 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~v~~l~~~~~------~~l~~-~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~a 96 (399)
+..+++.|++.|+.+..+.+=++.+ ..+.+ ++.|||.|+. ..+.|.++.... ..+.+++++
T Consensus 12 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~n--------aV~~~~~~~~~~----~~~~~~~~~ 79 (240)
T PRK09189 12 AERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAE--------AVRHLAALGERL----LPHLALPLF 79 (240)
T ss_pred hHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHH--------HHHHHHhcchhh----HHhcCCeEE
Confidence 4566667778898887665433321 11233 5656554432 133343321111 124566766
Q ss_pred EEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 97 VFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 97 vfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+.| +.-.+.|++.|.+.+.
T Consensus 80 aVG-------------~~Ta~~l~~~G~~~~~ 98 (240)
T PRK09189 80 AVG-------------EATAEAARELGFRHVI 98 (240)
T ss_pred EEc-------------HHHHHHHHHcCCCCCc
Confidence 665 4556677788877543
No 187
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=40.47 E-value=13 Score=32.54 Aligned_cols=31 Identities=35% Similarity=0.439 Sum_probs=26.7
Q ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 16 QTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 16 ~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
.+|++.++|+.|+..|.++|+.|.+.+-++|
T Consensus 3 L~G~~sKvaraiA~~LC~rgv~V~m~~~~~y 33 (164)
T PF12076_consen 3 LTGNTSKVARAIALALCRRGVQVVMLSKERY 33 (164)
T ss_pred ecccccHHHHHHHHHHHhcCCEEEEecHHHH
Confidence 3799999999999999999999888755554
No 188
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=40.27 E-value=70 Score=30.76 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 6 RNKLLILYASQTG---NALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 6 ~~~v~IlY~S~tG---~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
+++|.|++|..+. -+-+-|+.+.+.|.+.|+++..++.+
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~ 44 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDAS 44 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 6789999984433 34477889999999999999888765
No 189
>PRK06932 glycerate dehydrogenase; Provisional
Probab=40.26 E-value=37 Score=33.16 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| ..|+.+.++++.+|++.++
T Consensus 144 ~l~gktvgIiG~G--------~IG~~va~~l~~fg~~V~~ 175 (314)
T PRK06932 144 DVRGSTLGVFGKG--------CLGTEVGRLAQALGMKVLY 175 (314)
T ss_pred ccCCCEEEEECCC--------HHHHHHHHHHhcCCCEEEE
Confidence 5889999999976 5789999999999998764
No 190
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=40.11 E-value=46 Score=30.71 Aligned_cols=32 Identities=38% Similarity=0.492 Sum_probs=26.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.+++++|.|+| .++..+.+.|.+.|++.+.
T Consensus 20 ~l~g~~vaIqGfG--------nVG~~~a~~L~~~G~~vV~ 51 (217)
T cd05211 20 SLEGLTVAVQGLG--------NVGWGLAKKLAEEGGKVLA 51 (217)
T ss_pred CcCCCEEEEECCC--------HHHHHHHHHHHHcCCEEEE
Confidence 6899999999976 4667777888888987763
No 191
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=39.42 E-value=39 Score=32.66 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=32.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
|+|.++--...|.++.++..+++.|.+.|++|.++...
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~ 38 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSS 38 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecC
Confidence 46666666778999999999999999999999988764
No 192
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.41 E-value=3.6e+02 Score=26.06 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-cCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---++.+++...+.+++.|+.++++.+.+-. .++ | .+.+.|++-.|--
T Consensus 38 ~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~ 117 (287)
T PRK14176 38 TPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAME 117 (287)
T ss_pred CCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 457888888888899999999999999999999988885421 111 1 1222344433321
Q ss_pred ---------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 65 ---------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
| .+-.|-+....++.|+.... .+.|+++.|+|-| +-.++=+...|.+.
T Consensus 118 ~I~p~KDVDGl~~~N~g~l~~g~~~~~PcTp~av~~ll~~~~i---~l~Gk~vvViGrs-------~iVGkPla~lL~~~ 187 (287)
T PRK14176 118 AIDPAKDADGFHPYNMGKLMIGDEGLVPCTPHGVIRALEEYGV---DIEGKNAVIVGHS-------NVVGKPMAAMLLNR 187 (287)
T ss_pred ccCccccccccChhhhhhHhcCCCCCCCCcHHHHHHHHHHcCC---CCCCCEEEEECCC-------cccHHHHHHHHHHC
Confidence 0 11235566667777765543 5899999999964 33578888889888
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
||+..
T Consensus 188 ~atVt 192 (287)
T PRK14176 188 NATVS 192 (287)
T ss_pred CCEEE
Confidence 98763
No 193
>PRK06487 glycerate dehydrogenase; Provisional
Probab=39.34 E-value=39 Score=33.01 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=27.8
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| ..|+.+.++++.+|++.++
T Consensus 145 ~l~gktvgIiG~G--------~IG~~vA~~l~~fgm~V~~ 176 (317)
T PRK06487 145 ELEGKTLGLLGHG--------ELGGAVARLAEAFGMRVLI 176 (317)
T ss_pred ccCCCEEEEECCC--------HHHHHHHHHHhhCCCEEEE
Confidence 5889999999976 5789999999999998764
No 194
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.05 E-value=3.6e+02 Score=25.97 Aligned_cols=112 Identities=17% Similarity=0.228 Sum_probs=75.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+- +.++ | ++.+.|++-.|--
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~ 110 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILE 110 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHh
Confidence 45677887777778999999999999999999988887542 1111 1 1223344433311
Q ss_pred ---------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 65 ---------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
| .+-.|-++..-++.|+.... .+.|+++.|+|-| +-.++=+..+|.+.
T Consensus 111 ~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvViGrS-------~~VG~Pla~lL~~~ 180 (281)
T PRK14183 111 AIDPKKDVDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYEI---DVKGKDVCVVGAS-------NIVGKPMAALLLNA 180 (281)
T ss_pred ccCchhcccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcCC---CCCCCEEEEECCC-------CcchHHHHHHHHHC
Confidence 1 11235567777777766544 5899999999965 33578888889888
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
||+..
T Consensus 181 ~AtVt 185 (281)
T PRK14183 181 NATVD 185 (281)
T ss_pred CCEEE
Confidence 98763
No 195
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=38.98 E-value=22 Score=29.35 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=25.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA 48 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~ 48 (399)
-++|-|||+...+.+.|+.|.+ .|+++.++++..+.+
T Consensus 12 i~iia~G~~~~~al~A~~~L~~----~Gi~~~vi~~~~i~P 48 (124)
T PF02780_consen 12 ITIIAYGSMVEEALEAAEELEE----EGIKAGVIDLRTIKP 48 (124)
T ss_dssp EEEEEETTHHHHHHHHHHHHHH----TTCEEEEEEEEEEES
T ss_pred EEEEeehHHHHHHHHHHHHHHH----cCCceeEEeeEEEec
Confidence 3456688887776666665554 599998888765543
No 196
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.73 E-value=45 Score=30.13 Aligned_cols=43 Identities=23% Similarity=0.488 Sum_probs=27.8
Q ss_pred eEEEE-EECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEE
Q 015866 8 KLLIL-YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFV 60 (399)
Q Consensus 8 ~v~Il-Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~ 60 (399)
+++|+ |+ +||...+++.+ ++.|.++.++.. ..++.+++.+|+.
T Consensus 2 ~~~v~~~~--~~~~~~~~~~l----~~~G~~~~~~~~----~~~~~~~d~iii~ 45 (200)
T PRK13143 2 MIVIIDYG--VGNLRSVSKAL----ERAGAEVVITSD----PEEILDADGIVLP 45 (200)
T ss_pred eEEEEECC--CccHHHHHHHH----HHCCCeEEEECC----HHHHccCCEEEEC
Confidence 44444 66 78887766555 447888877752 3456678887773
No 197
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.29 E-value=92 Score=28.67 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=67.2
Q ss_pred CcccccCCEEEEccCCCHHHHH----HHHHHcCCCCCcEEEEeecCCC--------CCCCCcCCCCCCCCCCHHHHHHHh
Q 015866 260 AIEYEVGDVLEILPSQDPAAVD----TFIQRCNLDPDALITVQHKEMK--------NYLPDIHKNTTEVPIKLRTFVELT 327 (399)
Q Consensus 260 ~~~Y~~GD~l~I~P~N~~~~V~----~~l~~l~l~~~~~v~i~~~~~~--------~~~p~~~~~~~~~~~tl~~ll~~~ 327 (399)
++.--||-..+-+|.|+....+ .+.+++|.|-..+|- ..+.. ..+|-.+.......--+.-++-+.
T Consensus 126 Dl~NVPGtya~plPenp~~vA~el~~Ei~rr~GvDV~v~v~--DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~Gfl~GRl 203 (278)
T COG4071 126 DLTNVPGTYACPLPENPKKVAEELYKEIKRRLGVDVVVMVA--DTDATYRILGFYFTALPYAIPGIISGTGVFGFLLGRL 203 (278)
T ss_pred cccCCCcceeccCCCChHHHHHHHHHHHHHHhCCceEEEEe--cCchHHHHHHHHHhhccccCCCeecccchHHHHHHHh
Confidence 4556799999999999865444 455678886543332 22211 023311112222334467788888
Q ss_pred cccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcc
Q 015866 328 MDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEY 387 (399)
Q Consensus 328 lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~ 387 (399)
.|.+- .|++--+ +. +.-++.+.+|.+ ..+-++-....+.|+.|+|++|.
T Consensus 204 ~~~t~-~pTPlAi------ag-~V~~~~~iel~~---~Ae~~~r~~~~r~tvyd~lee~~ 252 (278)
T COG4071 204 ADVTK-IPTPLAI------AG-EVYKKYSIELTR---IAEICDRVHKTRKTVYDVLEEYS 252 (278)
T ss_pred hcccc-CCCccee------cc-chhHHHHHHHHH---HHHHHHhhCcchhhHHHHHHHhC
Confidence 88887 6776322 22 444555556664 22334445555669999999975
No 198
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=37.97 E-value=15 Score=36.01 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE---eCCCCCcCCCCCCCeEEEEeec
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVR---PVDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~---~l~~~~~~~l~~~~~ii~~~sT 63 (399)
+|++.|+.-|..| .++|++|++.|....+..+.+ ++.+.-.+.+.+++.+||++++
T Consensus 3 ~m~iaii~~t~~G--~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~d~iIfI~A~ 61 (315)
T PRK05788 3 TMKIAIICATERG--RDLAERLKAKLKADCYTSEKLEYEGFADAFEEAFGCYDALIFIMAT 61 (315)
T ss_pred cceEEEEEECccH--HHHHHHHHHhcccceecchhhccCCHHHHHHHHHhcCCeEEEEECh
Confidence 4778888776666 889999999886433322211 0111111234678999999987
No 199
>PRK05907 hypothetical protein; Provisional
Probab=37.83 E-value=3.9e+02 Score=26.01 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=66.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC---------CCCCCeEEEEeecCCCCCCc-hhHHHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC---------LPEEDTVIFVVSTTGQGDTP-DSMKVF 76 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~---------l~~~~~ii~~~sT~g~G~~p-~~~~~f 76 (399)
..++++||++. +...++|.+.+-..+. ..++.++.+.+. +....-+|++--+ +.+. .+.+.+
T Consensus 18 ~~~y~~~g~~~---~~~~~~l~~~~~~~~~--~~fdg~~~~~~~ii~~aetlPfFaerRlV~v~~~---~~~~~~~~~~L 89 (311)
T PRK05907 18 RPAVIVIGSSS---EEDKDIFIELLVSGRK--SEFDGQGLLQQELLSWTEHFGLFASQETIGIYQA---EKMSSSTQEFL 89 (311)
T ss_pred CceEEEecCCc---HHHHHHHHHHhCCCcc--ceecCCCCCHHHHHHHHhcCCcccCeEEEEEecc---cccccccHHHH
Confidence 48999999999 7777777776532222 446777665432 2344444444211 1222 356778
Q ss_pred HHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
.+++.+. .....+.||.. .+.++...-|.+. + |+.. -..++.... .+..+.+|..+..+..
T Consensus 90 ~~Yl~np------~~~~~liv~~~---~~d~~kkl~K~i~----k-~~~v-~~~~e~~~l----~e~~L~~Wi~~~~~~~ 150 (311)
T PRK05907 90 IRYARNP------NPHLTLFLFTT---KQECFSSLSKKLS----S-ALCL-SLFGEWFAD----RDKRIAQLLIQRAKEL 150 (311)
T ss_pred HHHHhCC------CCCeEEEEEEe---cccHHHHHHHHHh----h-ccee-ccccccCCC----CHHHHHHHHHHHHHHc
Confidence 8887542 22334554654 2556654444443 2 2221 000112111 3578899988877655
Q ss_pred H
Q 015866 157 H 157 (399)
Q Consensus 157 ~ 157 (399)
.
T Consensus 151 g 151 (311)
T PRK05907 151 G 151 (311)
T ss_pred C
Confidence 3
No 200
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=37.77 E-value=45 Score=32.85 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=28.3
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| ..|+.+.++++..|++.++
T Consensus 143 ~l~gktvGIiG~G--------rIG~avA~r~~~Fgm~v~y 174 (324)
T COG1052 143 DLRGKTLGIIGLG--------RIGQAVARRLKGFGMKVLY 174 (324)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHhcCCCEEEE
Confidence 5789999999986 6899999999999998775
No 201
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=37.74 E-value=32 Score=34.73 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=25.3
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCC
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGD 102 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGd 102 (399)
.+.|+||+++++++++ +-|..+++++.|-
T Consensus 389 ~~LP~~A~~Yi~~iEE-------~~gvPV~iistGP 417 (430)
T COG0104 389 DDLPENARKYIKRIEE-------LVGVPVTIISTGP 417 (430)
T ss_pred HHcCHHHHHHHHHHHH-------HHCCCEEEEecCC
Confidence 5789999999999976 5789999999984
No 202
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=37.49 E-value=73 Score=28.73 Aligned_cols=42 Identities=21% Similarity=0.432 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.++.|++++.+.. ...+.+.+++++| ....+.|++.|.+.+.
T Consensus 184 ~v~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~ 225 (239)
T cd06578 184 TVRNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVI 225 (239)
T ss_pred HHHHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 5778888876432 1235667777776 4566778888987654
No 203
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=37.17 E-value=2.8e+02 Score=24.15 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=41.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
-..+||. |.+..+|+.++..+...|..+.... +.....+.+.+++|++ |-. |..+ .....++..++
T Consensus 35 ~I~i~G~--G~S~~~A~~~~~~l~~~g~~~~~~~--~~~~~~~~~~D~vI~i-S~s--G~t~-~~i~~~~~ak~ 100 (179)
T cd05005 35 RIFVYGA--GRSGLVAKAFAMRLMHLGLNVYVVG--ETTTPAIGPGDLLIAI-SGS--GETS-SVVNAAEKAKK 100 (179)
T ss_pred eEEEEec--ChhHHHHHHHHHHHHhCCCeEEEeC--CCCCCCCCCCCEEEEE-cCC--CCcH-HHHHHHHHHHH
Confidence 3566774 7888999999999988888776643 3223344556655544 443 3333 45666666544
No 204
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=36.97 E-value=1.9e+02 Score=27.92 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC-CC-----CCeEEEEeecCCCCC-CchhHHHHHHHHHhccCCc
Q 015866 21 LDAAERIGRESERRGCPVVVRPVDDYDAR------CL-PE-----EDTVIFVVSTTGQGD-TPDSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 21 e~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l-~~-----~~~ii~~~sT~g~G~-~p~~~~~f~~~L~~~~~~~ 87 (399)
..+|+.|++.+.+.|+++...+=-.+|-. -+ ++ ..+|=+...+..... .+....+|=+.|.+...
T Consensus 98 ~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~-- 175 (284)
T PRK13366 98 PDLAAHIAQSVIQDDFDLTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVE-- 175 (284)
T ss_pred HHHHHHHHHHHHHCCCCEeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHH--
Confidence 77999999999999997754331112111 01 11 233323233332222 23334445555544310
Q ss_pred cccCCceEEEEecCCCCc
Q 015866 88 QWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y 105 (399)
..-+..+++|+|+|+.+.
T Consensus 176 ~~~~d~rV~iIaSGgLSH 193 (284)
T PRK13366 176 SYDEDLNVQIWGTGGMSH 193 (284)
T ss_pred hcCcCCCEEEEecCcccc
Confidence 011367899999998775
No 205
>TIGR02619 putative CRISPR-associated protein, APE2256 family. This model represents a conserved domain of about 150 amino acids found in at least five archaeal species and three bacterial species, exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In six of eight species, the member of this family is in the vicinity of a CRISPR/Cas locus.
Probab=36.97 E-value=54 Score=28.42 Aligned_cols=32 Identities=28% Similarity=0.174 Sum_probs=28.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCc
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPV 38 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~ 38 (399)
..-.++|.|.|+..+..|+.+.+.+.+.|..+
T Consensus 34 ~d~~~Ll~SDT~~G~~~a~ilk~yl~~~~~~~ 65 (149)
T TIGR02619 34 DDKAILYHSDTAQGRFCASILKRFLERELRAR 65 (149)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHHHHhcccc
Confidence 45689999999999999999999999877653
No 206
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.66 E-value=21 Score=29.99 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=29.8
Q ss_pred eEEEEecCCCCc--hhHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 94 RYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 94 ~~avfGlGds~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
+++|+..||.-+ .-+...+..+.++|++.|++........|+
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd 44 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDD 44 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCC
Confidence 478888888654 245667889999999999887654344443
No 207
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=36.02 E-value=48 Score=32.60 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=28.5
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..|.|+.++|+|+| ..|+.+.++++.+|.+.++
T Consensus 138 ~el~gkTvGIiG~G--------~IG~~va~~l~afgm~v~~ 170 (324)
T COG0111 138 TELAGKTVGIIGLG--------RIGRAVAKRLKAFGMKVIG 170 (324)
T ss_pred ccccCCEEEEECCC--------HHHHHHHHHHHhCCCeEEE
Confidence 35779999999976 6789999999999998863
No 208
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.87 E-value=4.1e+02 Score=25.59 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=75.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-cCC-------C---CCCCeEEEEeecCC----------
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARC-------L---PEEDTVIFVVSTTG---------- 65 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-~~~-------l---~~~~~ii~~~sT~g---------- 65 (399)
+++.|+....---+..+++...+.+++.|+.++++.+.+-. .++ | .+.+.|++-.|--.
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~ 112 (278)
T PRK14172 33 PKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK 112 (278)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence 57888888888899999999999999999999988886421 111 1 12234444433210
Q ss_pred -------CC---------------CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCC
Q 015866 66 -------QG---------------DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG 123 (399)
Q Consensus 66 -------~G---------------~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lG 123 (399)
+| -.|-.+..-++.|+.... .+.|+++.|+|-+ .-.++=+..+|.+.|
T Consensus 113 I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~i---~l~Gk~vvViGrS-------~~VGkPla~lL~~~~ 182 (278)
T PRK14172 113 IDANKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLNI---DIEGKEVVVIGRS-------NIVGKPVAQLLLNEN 182 (278)
T ss_pred cCcccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHHHHCC
Confidence 11 124456666666665443 5899999999954 346788888888888
Q ss_pred Ceee
Q 015866 124 ATAV 127 (399)
Q Consensus 124 a~~~ 127 (399)
|+..
T Consensus 183 AtVt 186 (278)
T PRK14172 183 ATVT 186 (278)
T ss_pred CEEE
Confidence 8763
No 209
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=35.81 E-value=74 Score=28.63 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=36.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEe
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVV 61 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~ 61 (399)
+|.|+ ...|+-...+..+.+.+++.|+.+++....+ ..++.+++.||+..
T Consensus 2 ~i~vl--~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--~~~l~~~d~iii~G 51 (200)
T PRK13527 2 KIGVL--ALQGDVEEHIDALKRALDELGIDGEVVEVRR--PGDLPDCDALIIPG 51 (200)
T ss_pred EEEEE--EECCccHHHHHHHHHHHHhcCCCeEEEEeCC--hHHhccCCEEEECC
Confidence 45555 3447778888888888888999888888765 35677788766654
No 210
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=35.65 E-value=38 Score=24.22 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=26.1
Q ss_pred EECCCchHHHHHHHHHHHHHhcCCCcEEEe
Q 015866 13 YASQTGNALDAAERIGRESERRGCPVVVRP 42 (399)
Q Consensus 13 Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~ 42 (399)
+.+..|++..+|.-+...|+..|++++++.
T Consensus 2 ~~~~~G~C~~~a~l~~~llr~~GIpar~v~ 31 (68)
T smart00460 2 LKTKYGTCGEFAALFVALLRSLGIPARVVS 31 (68)
T ss_pred CcccceeeHHHHHHHHHHHHHCCCCeEEEe
Confidence 456789999999999999999999988764
No 211
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=35.65 E-value=67 Score=23.90 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=33.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
++|.| |++.-.++..+.+.+.+.+.+.|+++++.+..+.
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~ 39 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIEDF 39 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTH
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCH
Confidence 46788 8999999999999999999988988888887543
No 212
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=35.60 E-value=1.3e+02 Score=21.90 Aligned_cols=54 Identities=11% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCCcCCCC-CCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 25 ERIGRESERRGCPVVVRPVDDYDARCLP-EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 25 ~~l~~~l~~~g~~~~v~~l~~~~~~~l~-~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
..+++.|++.|++++...-- .+.+. ....+|++.+.....+ |..++.+.+|+.+
T Consensus 8 ~a~~~~L~~~g~~v~~~~~~---~~~l~~~~~tll~i~~~~~~~~-~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWRKP---YEALEADDGTLLVIGPDLRLSE-PEEAEALLEWVEA 62 (70)
T ss_pred HHHHHHHHHCCCeeEEeccc---HHHhCCCCCEEEEEeCCCCCCc-hHHHHHHHHHHHc
Confidence 34556667778877644321 12333 4456777777642222 5778889999854
No 213
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=35.59 E-value=2.3e+02 Score=26.34 Aligned_cols=80 Identities=19% Similarity=0.058 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCC-CCC--cC-C---C-CC-CCe-EEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVD-DYD--AR-C---L-PE-EDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~-~~~--~~-~---l-~~-~~~-ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
...+|++|++.+.+ |+.+...+-. ..+ .. . + .. .+. ||=++-.+.. ..++...+|-+.|.....
T Consensus 82 d~ela~~l~~~~~~-~~~~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~-~~~~~~~~lG~aL~~~~~---- 155 (260)
T cd07320 82 DPDLAWEIAEELIK-EIPVTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLV-PPFAKLFEFGKAIRAAVE---- 155 (260)
T ss_pred CHHHHHHHHHHHHh-cCCEEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccC-CCHHHHHHHHHHHHHHHH----
Confidence 46788888888887 8776533311 121 00 0 1 12 222 3323222211 135556667777754311
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
-.+.+++|+|+||-+.
T Consensus 156 ~~~~~vliI~SGdlsH 171 (260)
T cd07320 156 PSDLRVHVVASGDLSH 171 (260)
T ss_pred hcCCcEEEEEeCcccc
Confidence 0256899999998764
No 214
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=35.51 E-value=53 Score=34.33 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=45.7
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCC---CCCeEE-EEee
Q 015866 6 RNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDARCLP---EEDTVI-FVVS 62 (399)
Q Consensus 6 ~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~---~~~~ii-~~~s 62 (399)
.+.+.|+-+|.+| +...++++|.+.++++|.+..++-+...++.+|. +.|..| ++||
T Consensus 281 A~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF~eID~fV~vaCP 342 (496)
T TIGR00272 281 AGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANFEDIDIFVLLGCS 342 (496)
T ss_pred CCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCCCEEEEccCC
Confidence 4679999999988 5788999999999999999999999999887664 445433 3344
No 215
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=35.21 E-value=1.4e+02 Score=24.92 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=37.9
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC---cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~---~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+-+|+..|.++.+|.++.+.. ++.+..++..++- ...+...+.+|+++ .. |.-.+.+.+..+++++
T Consensus 19 ~G~G~s~~~a~e~~~kl~e~~---~i~~~~~~~~e~~hg~~~~~~~~~~vi~is-~~--g~t~~~~~~~~~~~~~ 87 (153)
T cd05009 19 LGRGPNYGTALEGALKLKETS---YIHAEAYSAGEFKHGPIALVDEGTPVIFLA-PE--DRLEEKLESLIKEVKA 87 (153)
T ss_pred EcCCCCHHHHHHHHHHHHHHH---hhcceeccHHHhccChhhhccCCCcEEEEe-cC--ChhHHHHHHHHHHHHH
Confidence 336667888888888777763 2456656555543 22344455555555 33 3333446677777754
No 216
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.93 E-value=1.1e+02 Score=29.66 Aligned_cols=38 Identities=34% Similarity=0.663 Sum_probs=32.1
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEe
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRP 42 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~ 42 (399)
+++++.|+|-...+.+.+++.++.+.|.++|+++.+..
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~ 39 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGP 39 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 35679999999888888999999999999998876644
No 217
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=34.88 E-value=2.4e+02 Score=22.66 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=40.2
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcC-CCcEEEeCCCCC--cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 11 ILYASQTGNALDAAERIGRESERRG-CPVVVRPVDDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~l~~~g-~~~~v~~l~~~~--~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.+||. |++..+|..++..+.+.| ..+...+..++. ...+.+.+++ ++.|.. |..+ +..+..+..++
T Consensus 3 ~i~G~--G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-I~iS~s--G~t~-e~~~~~~~a~~ 71 (126)
T cd05008 3 LIVGC--GTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLV-IAISQS--GETA-DTLAALRLAKE 71 (126)
T ss_pred EEEEc--cHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEE-EEEeCC--cCCH-HHHHHHHHHHH
Confidence 34554 899999999999999876 777776633322 1223445544 444544 4444 46666666644
No 218
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=34.85 E-value=51 Score=33.86 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=40.8
Q ss_pred CCeEEEEeecCCCCCCch--hHHHHHHH-HHhccC-CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 54 EDTVIFVVSTTGQGDTPD--SMKVFWRF-LLQKSL-SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 54 ~~~ii~~~sT~g~G~~p~--~~~~f~~~-L~~~~~-~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
.+.||+++.-|+.+..|+ ....|--. +..... ....++||+++|+|.|.|. -.+-..|.+.|++.
T Consensus 133 a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA--------~di~~~l~~~ga~v 201 (443)
T COG2072 133 ADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASA--------VDIAPELAEVGASV 201 (443)
T ss_pred cCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccH--------HHHHHHHHhcCCee
Confidence 788999999998888776 11112111 111111 1236899999999999874 34555666666543
No 219
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=34.27 E-value=65 Score=30.79 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=31.8
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 7 NKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 7 ~~v~IlY~S~t-G~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
|+|+++=.+.. |.++..+..++++|.++|++|.++..+..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 45666544433 88999999999999999999998887664
No 220
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=34.09 E-value=1.1e+02 Score=29.17 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=29.8
Q ss_pred EEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 9 LLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 9 v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
|+++..+. .|-++..+..+++.|.++|+++.++....
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 55555543 49999999999999999999999887644
No 221
>PTZ00445 p36-lilke protein; Provisional
Probab=33.77 E-value=2.5e+02 Score=26.04 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=60.4
Q ss_pred CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-----CCC-CCeEEEEeecCCCCCCchhHHHHHHHHHhccCCcccc
Q 015866 17 TGNALDAAERIGRESERRGCPVVVRPVDDYDARC-----LPE-EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (399)
Q Consensus 17 tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-----l~~-~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l 90 (399)
.=|....|+.+.+.|++.|+++-+.|+|..-+.. ... .+...++.+ .++..+.+.+.|.+
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~------~tpefk~~~~~l~~-------- 89 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTS------VTPDFKILGKRLKN-------- 89 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhcc------CCHHHHHHHHHHHH--------
Confidence 4477899999999999999999999988642221 111 111111111 23345555555533
Q ss_pred CCceEEEEecCCCCc------hhHHHHHHHHHHHHHhCCCee
Q 015866 91 EGVRYAVFGLGDSGY------QKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 91 ~~~~~avfGlGds~y------~~f~~~~k~l~~~L~~lGa~~ 126 (399)
.|.+++|.-.-|..- +.+-...+.+...|+.-++.-
T Consensus 90 ~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~ 131 (219)
T PTZ00445 90 SNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDF 131 (219)
T ss_pred CCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccc
Confidence 478888888766522 245667788888888666554
No 222
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.66 E-value=4.5e+02 Score=25.49 Aligned_cols=112 Identities=17% Similarity=0.113 Sum_probs=79.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-cCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+-. .++ | ++.+.|++-.|--
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~ 111 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIIN 111 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 457888888888899999999999999999999999886432 111 1 1233455555411
Q ss_pred ---------------------CC---CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHH
Q 015866 65 ---------------------GQ---GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL 120 (399)
Q Consensus 65 ---------------------g~---G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~ 120 (399)
|+ +-.|-.+...++.|+.... .+.|+++.|+|-+ +-.++=+..+|.
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvViGrS-------~iVGkPla~lL~ 181 (294)
T PRK14187 112 TIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITR---NLSGSDAVVIGRS-------NIVGKPMACLLL 181 (294)
T ss_pred ccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHHh
Confidence 21 2246677777777765543 5899999999954 346788888999
Q ss_pred hCCCeee
Q 015866 121 DLGATAV 127 (399)
Q Consensus 121 ~lGa~~~ 127 (399)
+.||+..
T Consensus 182 ~~~aTVt 188 (294)
T PRK14187 182 GENCTVT 188 (294)
T ss_pred hCCCEEE
Confidence 8898874
No 223
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=33.46 E-value=57 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=29.0
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 276 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~ 276 (399)
+|++.+.+++ +++++.|+.+ ..+.|+||.++.|.-.++
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 4 TLLSIEPVTH-----DVKRLRFDKP-EGYDFTPGQATEVAIDKP 41 (218)
T ss_pred EEEEEEEcCC-----CeEEEEEcCC-CcCCCCCCCEEEEEeeCC
Confidence 5777777764 5788888876 467899999999875443
No 224
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=33.30 E-value=2.7e+02 Score=27.53 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC-CCCCe-EE-E--EeecCCCCCCchhHHHHHHHHHhccCCcc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR------CL-PEEDT-VI-F--VVSTTGQGDTPDSMKVFWRFLLQKSLSKQ 88 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l-~~~~~-ii-~--~~sT~g~G~~p~~~~~f~~~L~~~~~~~~ 88 (399)
...+|+.|++.+.+.|+++....--.+|-. -+ +.++. +| + .+.++ -...+....+|=+.|.+..-
T Consensus 99 d~eLA~~I~~~l~~~G~dva~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~-p~~~~~r~~~lG~AI~~aie--- 174 (329)
T cd07369 99 NPEVAEQLLRALVHDSFDCARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSP-PLMKYSRAYALGAAVRKAIE--- 174 (329)
T ss_pred CHHHHHHHHHHHHHCCCCeeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCC-CCCCHHHHHHHHHHHHHHHH---
Confidence 678999999999999988743321112211 01 12232 22 2 22233 23344555666666654321
Q ss_pred cc-CCceEEEEecCCCCc-h-hHHHHHHHHHHHHHhC
Q 015866 89 WL-EGVRYAVFGLGDSGY-Q-KFNFVAKKLDNRLLDL 122 (399)
Q Consensus 89 ~l-~~~~~avfGlGds~y-~-~f~~~~k~l~~~L~~l 122 (399)
.+ .+++++|+|+||-+. + .+..+.-.++++|+++
T Consensus 175 ~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~ 211 (329)
T cd07369 175 DLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRM 211 (329)
T ss_pred hcCCCCCEEEEEeCccccCCccccccchhhhhhhhhc
Confidence 12 258999999999775 2 2333344455555443
No 225
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=32.96 E-value=2.5e+02 Score=25.99 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=30.9
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~ 47 (399)
+|+++..+ .|..+.....+++.|.+.|+++.++..+...
T Consensus 1 kIl~i~~~-~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTV-DGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEec-chhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 35556555 6888899999999999999999998876544
No 226
>PRK13055 putative lipid kinase; Reviewed
Probab=32.93 E-value=2.8e+02 Score=27.11 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=51.5
Q ss_pred CCeEEEEEECCCchH--HHHHHHHHHHHHhcCCCcEEEeCCC--CCcCC----C--CCCCeEEEEeecCCCCCCchhHHH
Q 015866 6 RNKLLILYASQTGNA--LDAAERIGRESERRGCPVVVRPVDD--YDARC----L--PEEDTVIFVVSTTGQGDTPDSMKV 75 (399)
Q Consensus 6 ~~~v~IlY~S~tG~t--e~~A~~l~~~l~~~g~~~~v~~l~~--~~~~~----l--~~~~~ii~~~sT~g~G~~p~~~~~ 75 (399)
++++.|+|-..+|+. .+...++.+.|.+.|+++.++-... -+... . ..++.|| ++. |+|. ...
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vv-v~G--GDGT----l~e 74 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLII-AAG--GDGT----INE 74 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEE-EEC--CCCH----HHH
Confidence 578999999888874 4667788888999998876653321 12111 1 2345444 443 7886 444
Q ss_pred HHHHHHhccCCccccCCceEEEEecCCCC
Q 015866 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSG 104 (399)
Q Consensus 76 f~~~L~~~~~~~~~l~~~~~avfGlGds~ 104 (399)
...-|.... ....++|+-.|..+
T Consensus 75 vvngl~~~~------~~~~LgiiP~GTgN 97 (334)
T PRK13055 75 VVNGIAPLE------KRPKMAIIPAGTTN 97 (334)
T ss_pred HHHHHhhcC------CCCcEEEECCCchh
Confidence 555543211 23468888777443
No 227
>PRK13243 glyoxylate reductase; Reviewed
Probab=32.91 E-value=60 Score=31.98 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=26.6
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.|.|++++|+|+| ..|+.+.++|+.+|++.+
T Consensus 147 ~L~gktvgIiG~G--------~IG~~vA~~l~~~G~~V~ 177 (333)
T PRK13243 147 DVYGKTIGIIGFG--------RIGQAVARRAKGFGMRIL 177 (333)
T ss_pred CCCCCEEEEECcC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999976 578899999999998754
No 228
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=32.80 E-value=1.7e+02 Score=29.09 Aligned_cols=70 Identities=14% Similarity=0.287 Sum_probs=43.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC---Cc----CCCC--CCCeEEEEeecCCCCCCchhHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---DA----RCLP--EEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~---~~----~~l~--~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
-+++.|+|.+..|- ..++.+.+.+.+.|.++....+..+ +. .++. +.+.||+-++. +.+..+
T Consensus 124 wk~vaiiYd~~~~~--~~lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~-------~~~~~i 194 (371)
T cd06388 124 WNRFVFLYDTDRGY--SILQAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEI-------ERLQNI 194 (371)
T ss_pred ceEEEEEecCCccH--HHHHHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCH-------HHHHHH
Confidence 47899999988887 4488888888888877654333222 11 1222 33444443332 367888
Q ss_pred HHHHHhcc
Q 015866 77 WRFLLQKS 84 (399)
Q Consensus 77 ~~~L~~~~ 84 (399)
++...+..
T Consensus 195 l~qa~~~g 202 (371)
T cd06388 195 LEQIVSVG 202 (371)
T ss_pred HHHHHhcC
Confidence 88887653
No 229
>PRK07053 glutamine amidotransferase; Provisional
Probab=32.62 E-value=2.8e+02 Score=25.79 Aligned_cols=72 Identities=14% Similarity=-0.015 Sum_probs=42.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC--cCCCCCCCeEEEEeec---CCCCCCchhHHHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVST---TGQGDTPDSMKVFWRFL 80 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~--~~~l~~~~~ii~~~sT---~g~G~~p~~~~~f~~~L 80 (399)
|++++|+--+..-+--.+++. |++.|+.++++...+-+ +.++.+++.+|+..+. |.+...| ......+++
T Consensus 2 m~~ilviqh~~~e~~g~i~~~----L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p-~~~~~~~~i 76 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQV----LGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYP-FLAPEIALL 76 (234)
T ss_pred CceEEEEECCCCCCChHHHHH----HHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCC-cHHHHHHHH
Confidence 567888877777776665544 45678888888764322 3345567766665533 3222234 344455555
Q ss_pred Hh
Q 015866 81 LQ 82 (399)
Q Consensus 81 ~~ 82 (399)
+.
T Consensus 77 ~~ 78 (234)
T PRK07053 77 RQ 78 (234)
T ss_pred HH
Confidence 43
No 230
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=32.61 E-value=27 Score=29.79 Aligned_cols=43 Identities=26% Similarity=0.181 Sum_probs=30.9
Q ss_pred eEEEEecCCCCc---------hhHHHHHHHHHHHHHhCCCeeeccceeecCC
Q 015866 94 RYAVFGLGDSGY---------QKFNFVAKKLDNRLLDLGATAVVERGLGDDQ 136 (399)
Q Consensus 94 ~~avfGlGds~y---------~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~ 136 (399)
+++|+-.||.-. .-++..+..+.++|+++|++........|+.
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~ 53 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDP 53 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCH
Confidence 678888887644 1356677889999999999877544455554
No 231
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=32.50 E-value=57 Score=23.56 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=21.8
Q ss_pred cCCCcccccCCEEEEccCCCHHHHHHHHHHcC
Q 015866 257 VSAAIEYEVGDVLEILPSQDPAAVDTFIQRCN 288 (399)
Q Consensus 257 ~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~ 288 (399)
+..+...++||.|-|.-. .+.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 345778999999999887 788999988876
No 232
>PRK13059 putative lipid kinase; Reviewed
Probab=32.39 E-value=3.7e+02 Score=25.71 Aligned_cols=85 Identities=13% Similarity=0.252 Sum_probs=48.5
Q ss_pred CCeEEEEEECCCchH--HHHHHHHHHHHHhcCCCcEEEeCCCCC-cC----CC-CCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 6 RNKLLILYASQTGNA--LDAAERIGRESERRGCPVVVRPVDDYD-AR----CL-PEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 6 ~~~v~IlY~S~tG~t--e~~A~~l~~~l~~~g~~~~v~~l~~~~-~~----~l-~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
++++.|+|--..|+- .+..+++.+.|.+.|+++.++...... .+ .. ...+ +|+++. |+|..-. ..
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d-~vi~~G--GDGTv~e----vv 73 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYK-YILIAG--GDGTVDN----VV 73 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCC-EEEEEC--CccHHHH----HH
Confidence 367888888777764 466778888899999887665543221 00 11 2334 333443 7775443 33
Q ss_pred HHHHhccCCccccCCceEEEEecCCC
Q 015866 78 RFLLQKSLSKQWLEGVRYAVFGLGDS 103 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~avfGlGds 103 (399)
..|.... .+..++|+-+|..
T Consensus 74 ~gl~~~~------~~~~lgviP~GTg 93 (295)
T PRK13059 74 NAMKKLN------IDLPIGILPVGTA 93 (295)
T ss_pred HHHHhcC------CCCcEEEECCCCH
Confidence 4443211 2356788877743
No 233
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=32.38 E-value=79 Score=32.95 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred cCCeEEEEEECCCchHHHH--HHHHHHHHHhcCCCcEEE------eCCCCCcCCCCCCCeEEEEee
Q 015866 5 KRNKLLILYASQTGNALDA--AERIGRESERRGCPVVVR------PVDDYDARCLPEEDTVIFVVS 62 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~--A~~l~~~l~~~g~~~~v~------~l~~~~~~~l~~~~~ii~~~s 62 (399)
.+++++.+=++.+|.+..+ |+.|.+.++++|+++++- -.+.++.+++...+.+|+.+.
T Consensus 2 ~~~kivaVtacp~GiAht~mAaeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d 67 (482)
T PRK11404 2 SSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQGSSGVENRLSSEEIAAADYVILATG 67 (482)
T ss_pred CcceEEEEecCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCccCCCCCCHHHHHhCCEEEEeec
Confidence 3568888999999987765 599999999999887632 234455567778887777754
No 234
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=32.16 E-value=80 Score=31.37 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=52.6
Q ss_pred CCeEEEEEECCCch-HHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCC---Ce-EEEEeecCCCCCCchhHHHHHHHH
Q 015866 6 RNKLLILYASQTGN-ALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE---DT-VIFVVSTTGQGDTPDSMKVFWRFL 80 (399)
Q Consensus 6 ~~~v~IlY~S~tG~-te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~---~~-ii~~~sT~g~G~~p~~~~~f~~~L 80 (399)
.+++.|+-+|..|. ...+|+.|.+.+.+.|.++.++-+++..++.|.+. +. ++.+||= -+-|....|.+.+
T Consensus 237 a~~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f~~iD~~v~taCPR----i~iDd~~~f~kPl 312 (347)
T COG1736 237 AKSFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTACPR----IPIDDGDRFKKPL 312 (347)
T ss_pred CCeEEEEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhcccceeEEEEecCCC----cccchHhhhCCcc
Confidence 56899999999996 56899999999999999999999999988877655 22 3333332 3445556665554
No 235
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=32.07 E-value=2.7e+02 Score=26.30 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEE---eCCCCC---cCCC-C--CCCeEEEEeecCCC-CCCchhHHHHHHHHHhccCCcccc
Q 015866 21 LDAAERIGRESERRGCPVVVR---PVDDYD---ARCL-P--EEDTVIFVVSTTGQ-GDTPDSMKVFWRFLLQKSLSKQWL 90 (399)
Q Consensus 21 e~~A~~l~~~l~~~g~~~~v~---~l~~~~---~~~l-~--~~~~ii~~~sT~g~-G~~p~~~~~f~~~L~~~~~~~~~l 90 (399)
..+|++|.+.+.+.|+++... .+|.-. ...+ + +..+|=+.+.+... ..++....+|-+.|.+... +..-
T Consensus 90 ~~LA~~l~~~~~~~~~~~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~~~~~lG~al~~~~~-~~~~ 168 (269)
T PRK13358 90 RAFAQAIALHRAADGFDLAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAKRCAALGEVIRQAVE-KDRP 168 (269)
T ss_pred HHHHHHHHHHHHHcCCCeeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHH-hhCC
Confidence 445888888888778764321 111110 0011 2 22333333333322 2334556667777755310 0001
Q ss_pred CCceEEEEecCCCCc
Q 015866 91 EGVRYAVFGLGDSGY 105 (399)
Q Consensus 91 ~~~~~avfGlGds~y 105 (399)
.+++++|+|+||-+.
T Consensus 169 ~~~rvlvIaSGdlSH 183 (269)
T PRK13358 169 ADERVAVIGTGGLSH 183 (269)
T ss_pred CCCcEEEEecCCccC
Confidence 367999999999765
No 236
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=32.04 E-value=62 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=28.2
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..|.|++++|+|+| ..|+.+.++++.+|.+.++
T Consensus 147 ~~L~gktvGIiG~G--------~IG~~vA~~~~~fGm~V~~ 179 (409)
T PRK11790 147 FEVRGKTLGIVGYG--------HIGTQLSVLAESLGMRVYF 179 (409)
T ss_pred ccCCCCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 35899999999986 5789999999999998764
No 237
>PRK06436 glycerate dehydrogenase; Provisional
Probab=31.91 E-value=65 Score=31.32 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=26.8
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..|.|++++|+|+| ..|+.+.++|+.+|.+.+
T Consensus 118 ~~L~gktvgIiG~G--------~IG~~vA~~l~afG~~V~ 149 (303)
T PRK06436 118 KLLYNKSLGILGYG--------GIGRRVALLAKAFGMNIY 149 (303)
T ss_pred CCCCCCEEEEECcC--------HHHHHHHHHHHHCCCEEE
Confidence 36889999999986 568888889999998765
No 238
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=31.90 E-value=1.9e+02 Score=23.72 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=50.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-------CCCCCCeEEEEeecCCCCCCchhHHHHHHHH
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L 80 (399)
+++|+|-...|+-....+++.+.+...+..++++........ .+..+.-.|+++. |+|. ....+..|
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~G--GDGT----l~~vv~~l 74 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVG--GDGT----LNEVVNGL 74 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEE--SHHH----HHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEc--CccH----HHHHHHHH
Confidence 467888777766555457888888888888887776552211 1234312444444 6764 55566666
Q ss_pred HhccCCccccCCceEEEEecCCCC
Q 015866 81 LQKSLSKQWLEGVRYAVFGLGDSG 104 (399)
Q Consensus 81 ~~~~~~~~~l~~~~~avfGlGds~ 104 (399)
..... -....++++-+|..+
T Consensus 75 ~~~~~----~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 75 MGSDR----EDKPPLGIIPAGTGN 94 (130)
T ss_dssp CTSTS----SS--EEEEEE-SSS-
T ss_pred hhcCC----CccceEEEecCCChh
Confidence 44321 114589999888654
No 239
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=31.87 E-value=1.6e+02 Score=25.18 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=35.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~ 64 (399)
++=+++.-|.+|.|+.+-+.+ +.++++|. .++-+....-..+.+..-+++.+++.
T Consensus 79 ~~D~~i~iS~sG~t~~~~~~~-~~a~~~g~--~ii~iT~~~~s~l~~~ad~~l~~~~~ 133 (154)
T TIGR00441 79 KGDVLLGISTSGNSKNVLKAI-EAAKDKGM--KTITLAGKDGGKMAGLADIELRVPHF 133 (154)
T ss_pred CCCEEEEEcCCCCCHHHHHHH-HHHHHCCC--EEEEEeCCCCCchhhhCCEEEEeCCC
Confidence 344677889999999887665 55677885 44444444444565544455566654
No 240
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=31.75 E-value=78 Score=29.40 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=31.8
Q ss_pred eEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCC
Q 015866 8 KLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYD 47 (399)
Q Consensus 8 ~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~ 47 (399)
+|+|+..+.. |.++..+..+++.|.+.|++|.++......
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3556655555 999999999999999999999998876543
No 241
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=31.62 E-value=2.1e+02 Score=27.21 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=29.1
Q ss_pred ECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 14 ASQTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 14 ~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
-..+|-++.++..+++.|.++|++|.++.....
T Consensus 11 ~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 11 PAKYGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 357899999999999999999999999887654
No 242
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=31.43 E-value=5.6e+02 Score=25.87 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc---C----CCCCCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---R----CLPEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~---~----~l~~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
..-+.|.|||.+|+++..++.+. +.|.++-++.+..+-+ + -+.+.+.|+++=-++-.|..-.-++....
T Consensus 260 Ae~~iV~~Gs~~~~~~eav~~lr----~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev~~ 335 (390)
T PRK08366 260 ADFVFMGMGSLMGTVKEAVDLLR----KEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTEAKG 335 (390)
T ss_pred CCEEEEEeCccHHHHHHHHHHHH----hcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHHHHH
Confidence 34578889999999998888774 4577776666654321 1 23567888888777532433233333333
Q ss_pred HHHhccCCccccCCceEEEEecCCCCc
Q 015866 79 FLLQKSLSKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 79 ~L~~~~~~~~~l~~~~~avfGlGds~y 105 (399)
.|.... .-.-+.-.|.|+|-+.+
T Consensus 336 ~l~~~~----~~~~~~~~i~g~gGr~~ 358 (390)
T PRK08366 336 ALYNTD----ARPIMKNYIVGLGGRDF 358 (390)
T ss_pred HHhccC----CCCceeceEeCcCCccC
Confidence 332110 00113457788887765
No 243
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.28 E-value=1.5e+02 Score=28.45 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=31.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVR 41 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~ 41 (399)
|++.|++-.....+..++++|.+.|+++|+++.+.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 57889988888899999999999999999888775
No 244
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.83 E-value=5e+02 Score=25.08 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=75.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-CC-------C---CCCCeEEEEeecCC---------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-RC-------L---PEEDTVIFVVSTTG--------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~-~~-------l---~~~~~ii~~~sT~g--------- 65 (399)
..++.|+....---+..+++...+.+++.|+.++++.+.+-.. ++ | ++.+.|++-.|--.
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~ 111 (284)
T PRK14179 32 VPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILL 111 (284)
T ss_pred CceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHh
Confidence 3567788777777889999999999999999999888864311 11 1 12233444333210
Q ss_pred --------CC---------------CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 66 --------QG---------------DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 66 --------~G---------------~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
+| -.|-++...++.|+.... .+.|++++|+|.+ +-+++-+...|.+.
T Consensus 112 ~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~v~vIG~S-------~ivG~Pla~lL~~~ 181 (284)
T PRK14179 112 AIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNV---ELEGKHAVVIGRS-------NIVGKPMAQLLLDK 181 (284)
T ss_pred ccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcCcHHHHHHHHHC
Confidence 11 235556666677665433 5899999999974 23577888889888
Q ss_pred CCeeec
Q 015866 123 GATAVV 128 (399)
Q Consensus 123 Ga~~~~ 128 (399)
|++...
T Consensus 182 gatVtv 187 (284)
T PRK14179 182 NATVTL 187 (284)
T ss_pred CCEEEE
Confidence 988753
No 245
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.66 E-value=5.1e+02 Score=25.17 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCCC----------CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----------PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~l----------~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+- +.+++ ++.+.|++-.|--
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~ 112 (297)
T PRK14168 33 VPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLN 112 (297)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 45688888888889999999999999999999998887532 21111 2234455554421
Q ss_pred ---------------------C---CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHH
Q 015866 65 ---------------------G---QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL 120 (399)
Q Consensus 65 ---------------------g---~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~ 120 (399)
| .+-.|-++...++.|+.... .+.|+++.|+|=+ +-.+|=+..+|.
T Consensus 113 ~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvViGrS-------~iVGkPla~lL~ 182 (297)
T PRK14168 113 AIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGV---ETSGAEVVVVGRS-------NIVGKPIANMMT 182 (297)
T ss_pred ccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcccHHHHHHHH
Confidence 1 12346677777777766543 5899999999854 335778888888
Q ss_pred hC----CCee
Q 015866 121 DL----GATA 126 (399)
Q Consensus 121 ~l----Ga~~ 126 (399)
+. ||+.
T Consensus 183 ~~~~~~~atV 192 (297)
T PRK14168 183 QKGPGANATV 192 (297)
T ss_pred hcccCCCCEE
Confidence 77 5555
No 246
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=30.56 E-value=14 Score=33.83 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCcEEEeCCCCCc-----------CCCC--CCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCC
Q 015866 26 RIGRESERRGCPVVVRPVDDYDA-----------RCLP--EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEG 92 (399)
Q Consensus 26 ~l~~~l~~~g~~~~v~~l~~~~~-----------~~l~--~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~ 92 (399)
++++.|++.|+++..+.+=.+.+ +.+. .++.|||- |.. .++.|++.|.........+.+
T Consensus 2 ~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~vift-S~~-------av~~~~~~l~~~~~~~~~~~~ 73 (231)
T PF02602_consen 2 ELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFT-SPN-------AVRAFFKALQSAGADLRLLKN 73 (231)
T ss_dssp HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEES-SHH-------HHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEE-CHH-------HHHHHHHHHhhhhhhhhhccC
Confidence 57788888998876555544333 1233 67755554 433 467788887622111123456
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 93 VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 93 ~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.++++.| +.-.+.|++.|.+..
T Consensus 74 ~~i~avG-------------~~Ta~~l~~~G~~~~ 95 (231)
T PF02602_consen 74 IKIFAVG-------------PKTAEALREYGFQPD 95 (231)
T ss_dssp SEEEESS-------------HHHHHHHHHTT-EEC
T ss_pred CeEEEEc-------------HHHHHHHHHcCCCcc
Confidence 6666655 345567778887764
No 247
>cd08507 PBP2_SgrR_like The C-terminal solute-binding domain of DNA-binding transcriptional regulator SgrR is related to the ABC-type oligopeptide-binding proteins and contains the type 2 periplasmic-binding fold. A novel family of SgrR transcriptional regulator contains a two-domain structure with an N terminal DNA-binding domain of the winged helix family and a C-terminal solute-binding domain. The C-terminal domain shows strong homology with the ABC-type oligopeptide-binding protein family, a member of the type 2 periplasmic-binding fold protein (PBP2) superfamily that also includes the C-terminal substrate-binding domain of LysR-type transcriptional regulators. SgrR (SugaR transport-related Regulator) is negatively autoregulated and activates transcription of divergent operon SgrS, which encodes a small RNA required for recovery from glucose-phosphate stress. Hence, the small RNA SgrS and SgrR, the transcription factor that controls sgrS expression, are both required for recovery f
Probab=30.55 E-value=1.4e+02 Score=30.36 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=30.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
.++.+.|.+... .+.+|+.|++.+++.|+++++..++.
T Consensus 298 ~~~~l~~~~~~~-~~~~a~~l~~~l~~~Gi~v~l~~~~~ 335 (448)
T cd08507 298 EELTLATYNQHP-HREDAKWIQQRLAKHGIRLEIHILSY 335 (448)
T ss_pred ceEEEEEcCCCc-hHHHHHHHHHHHHHcCcEEEEEeecc
Confidence 467777766555 78999999999999999998876654
No 248
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.44 E-value=1.2e+02 Score=24.60 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=33.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecC
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~ 64 (399)
-+++.-|.+|+++.+.+.+.. ++++|.++ +-+.+..-..+.+..-+++.+++.
T Consensus 49 d~vi~iS~sG~t~~~~~~~~~-a~~~g~~v--i~iT~~~~s~la~~ad~~l~~~~~ 101 (128)
T cd05014 49 DVVIAISNSGETDELLNLLPH-LKRRGAPI--IAITGNPNSTLAKLSDVVLDLPVE 101 (128)
T ss_pred CEEEEEeCCCCCHHHHHHHHH-HHHCCCeE--EEEeCCCCCchhhhCCEEEECCCC
Confidence 345556999999999998866 67788554 444443334454444455555543
No 249
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=30.36 E-value=73 Score=28.90 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=33.4
Q ss_pred CccccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
||+...+.|+|+|||.+-.--.=..+..+.|.+.++.|.++.+.
T Consensus 96 ~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~la 139 (193)
T PF04056_consen 96 MPSHGSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLA 139 (193)
T ss_pred CccccceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEh
Confidence 34555678999999998655555566677788888888888875
No 250
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=30.27 E-value=4e+02 Score=26.28 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEe-CC---CCCcC------C-CCCCCe-EEEEeecCCCCC---CchhHHHHHHHHHhcc
Q 015866 20 ALDAAERIGRESERRGCPVVVRP-VD---DYDAR------C-LPEEDT-VIFVVSTTGQGD---TPDSMKVFWRFLLQKS 84 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~-l~---~~~~~------~-l~~~~~-ii~~~sT~g~G~---~p~~~~~f~~~L~~~~ 84 (399)
...+|+.|.+.+.+.|+++...+ ++ .+|-. . +++.+. +|-++-....-- .+....+|=+.|.+.-
T Consensus 150 d~eLA~~I~~~l~~~G~dv~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~aL~~ai 229 (328)
T cd07366 150 HPELARHLIKHTVADGFDVAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRAVARAI 229 (328)
T ss_pred CHHHHHHHHHHHHHcCCCeeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56799999999999999875432 11 11111 0 122232 333332221111 1223345555564431
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHH
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL 120 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~ 120 (399)
- ..-.+.+++|+|+|+-+... ....+|+++.
T Consensus 230 ~--~~~~d~rV~IIaSGgLSH~l---~~~eFD~~~l 260 (328)
T cd07366 230 R--SWPGDARVGVIASGGLSHFV---IDEEFDRRIL 260 (328)
T ss_pred H--hcCCCCCEEEEEeCccccCC---ChHHHHHHHH
Confidence 0 01147899999999887642 2244555443
No 251
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.03 E-value=2.2e+02 Score=22.85 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=41.5
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc---CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~---~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+-.++||+ |+++.+|+.++..+...|..+..+.-.+... ..+.. +.++|+.|..|. . ..+.+..+.++.
T Consensus 14 ~~i~i~g~--g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~iS~~g~--~-~~~~~~~~~a~~ 85 (139)
T cd05013 14 RRIYIFGV--GSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTP-GDVVIAISFSGE--T-KETVEAAEIAKE 85 (139)
T ss_pred CEEEEEEc--CchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCC-CCEEEEEeCCCC--C-HHHHHHHHHHHH
Confidence 34566765 5688999999999998887766553221111 11233 446666666544 3 346666666544
No 252
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=29.97 E-value=47 Score=30.34 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=27.6
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCC-cccccCCEEEEccCCCH
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQDP 277 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~-~~Y~~GD~l~I~P~N~~ 277 (399)
+|++.+.+++ ++++++|+.++.. ..|+||.++.|...++.
T Consensus 2 ~v~~i~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~ 42 (231)
T cd06191 2 RVAEVRSETP-----DAVTIVFAVPGPLQYGFRPGQHVTLKLDFDG 42 (231)
T ss_pred EEEEEEecCC-----CcEEEEEeCCCCCCCCCCCCCeEEEEEecCC
Confidence 4556666654 5778888876432 58999999999755433
No 253
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=29.96 E-value=4.2e+02 Score=26.19 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCC----CCcC------C-CCCCCe-E-EEEeecCCCC--CCchhHHHHHHHHHhcc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDD----YDAR------C-LPEEDT-V-IFVVSTTGQG--DTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~----~~~~------~-l~~~~~-i-i~~~sT~g~G--~~p~~~~~f~~~L~~~~ 84 (399)
...+|+.|.+.+.+.|+++...+-.+ +|-. . +++.+. | =+...+...- ..+....+|-+.|.+..
T Consensus 154 d~eLA~~I~~~l~~~G~d~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~~~i 233 (335)
T PRK13363 154 VPELARHMIRRLVDDGFDITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLRRAI 233 (335)
T ss_pred CHHHHHHHHHHHHHcCCCeeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999876432111 1111 1 122332 2 2222322111 12245556666665431
Q ss_pred CCccccCCceEEEEecCCCCc
Q 015866 85 LSKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y 105 (399)
. ..-.+++++|+|+||-+.
T Consensus 234 -~-~~~~d~rVlIIaSGdLSH 252 (335)
T PRK13363 234 -R-SWPEDARVAVIASGGLSH 252 (335)
T ss_pred -H-hcCcCCCEEEEEeCcccc
Confidence 0 011468999999999765
No 254
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=29.93 E-value=77 Score=28.85 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=28.9
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCC-cccccCCEEEEccC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPS 274 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~-~~Y~~GD~l~I~P~ 274 (399)
+|++++.+++ +++.+.|+.++.. ..|+||.++.|..+
T Consensus 5 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 42 (235)
T cd06217 5 RVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLT 42 (235)
T ss_pred EEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEe
Confidence 6778888864 5888888877322 78999999999865
No 255
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=29.90 E-value=97 Score=28.23 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=29.4
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecC-CCcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~-~~~~Y~~GD~l~I~P~N 275 (399)
+|++++.+++ +++++.|+.+. ..+.|+||.++.|..+.
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 4 TVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred EEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 6778888875 47888888764 35789999999998654
No 256
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=29.86 E-value=37 Score=25.60 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.1
Q ss_pred cccccCCEEEEccCCCH
Q 015866 261 IEYEVGDVLEILPSQDP 277 (399)
Q Consensus 261 ~~Y~~GD~l~I~P~N~~ 277 (399)
..|++||.+-|+.+|+-
T Consensus 4 ~~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPH 20 (75)
T ss_pred cccCCCCEEEEEEcCCC
Confidence 36999999999999984
No 257
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=29.79 E-value=75 Score=31.21 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=27.3
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHH-hCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL-DLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~-~lGa~~~~ 128 (399)
.|.|++++|+|+| ..|+.+.++++ .+|++.++
T Consensus 142 ~L~gktvGIiG~G--------~IG~~va~~l~~~fgm~V~~ 174 (323)
T PRK15409 142 DVHHKTLGIVGMG--------RIGMALAQRAHFGFNMPILY 174 (323)
T ss_pred CCCCCEEEEEccc--------HHHHHHHHHHHhcCCCEEEE
Confidence 5889999999976 57899999998 89998764
No 258
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=29.61 E-value=77 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=27.3
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+.|++++|+|+| ..|+.+.++|+.+|.+..
T Consensus 132 ~~l~g~tvgIvG~G--------~IG~~vA~~l~afG~~V~ 163 (312)
T PRK15469 132 YHREDFTIGILGAG--------VLGSKVAQSLQTWGFPLR 163 (312)
T ss_pred CCcCCCEEEEECCC--------HHHHHHHHHHHHCCCEEE
Confidence 35789999999976 678999999999998764
No 259
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=29.51 E-value=71 Score=31.53 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=27.7
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..|+|++++|+|+| ..++.+.+.|...|.+.+.
T Consensus 12 ~~LkgKtVGIIG~G--------sIG~amA~nL~d~G~~ViV 44 (335)
T PRK13403 12 ELLQGKTVAVIGYG--------SQGHAQAQNLRDSGVEVVV 44 (335)
T ss_pred hhhCcCEEEEEeEc--------HHHHHHHHHHHHCcCEEEE
Confidence 36899999999976 5688888999999988753
No 260
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.24 E-value=5.3e+02 Score=24.93 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....---+..+++...+.+++.|+.++++.+.+- +.++ | ++.+.|++-.|--
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~ 111 (288)
T PRK14171 32 SPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILS 111 (288)
T ss_pred CCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 45677887777788999999999999999999988887532 1111 1 1122333333211
Q ss_pred ---------------------C--CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh
Q 015866 65 ---------------------G--QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 65 ---------------------g--~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~ 121 (399)
| .+-.|-.+...++.|+.... .+.|+++.|+|-+ +-.++=+..+|.+
T Consensus 112 ~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i---~l~GK~vvViGrS-------~iVGkPla~lL~~ 181 (288)
T PRK14171 112 AVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP---NLTGKNVVIIGRS-------NIVGKPLSALLLK 181 (288)
T ss_pred ccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHHH
Confidence 1 12245566667777765543 5899999999954 3357788888888
Q ss_pred CCCeee
Q 015866 122 LGATAV 127 (399)
Q Consensus 122 lGa~~~ 127 (399)
.||+..
T Consensus 182 ~~ATVt 187 (288)
T PRK14171 182 ENCSVT 187 (288)
T ss_pred CCCEEE
Confidence 888764
No 261
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.04 E-value=5.3e+02 Score=24.85 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-C-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-C-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.++....-.-+..+++...+.+++.|+.++++.+.+...+ + | ++.+.|++-.|--
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~ 110 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIY 110 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 46788888888889999999999999999999999888653211 1 1 1122333333311
Q ss_pred ---------------------C--CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh
Q 015866 65 ---------------------G--QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 65 ---------------------g--~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~ 121 (399)
| .+-.|-++...++.|+.... .++|+++.|+|-+ .-.++=+..+|.+
T Consensus 111 ~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i---~l~Gk~vvViGrS-------~~VGkPla~lL~~ 180 (282)
T PRK14180 111 SIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI---KTEGAYAVVVGAS-------NVVGKPVSQLLLN 180 (282)
T ss_pred hcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHHH
Confidence 1 12245567777777765433 5889999999954 3357778888888
Q ss_pred CCCeee
Q 015866 122 LGATAV 127 (399)
Q Consensus 122 lGa~~~ 127 (399)
.||+..
T Consensus 181 ~~ATVt 186 (282)
T PRK14180 181 AKATVT 186 (282)
T ss_pred CCCEEE
Confidence 888763
No 262
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=28.79 E-value=1.2e+02 Score=26.54 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=28.1
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 93 VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 93 ~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
++++|||... .=+.|..+++.+-+.|.+.|...++
T Consensus 2 ~~I~V~gss~-~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 2 VQIGVIGSSN-KSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred eEEEEEeCCC-CChHHHHHHHHHHHHHHHCCCEEEc
Confidence 4799999764 3347888999999999999986665
No 263
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=28.77 E-value=1.9e+02 Score=25.64 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=37.6
Q ss_pred CeEEEE--EECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 7 NKLLIL--YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 7 ~~v~Il--Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
|+++|+ |.|.|-| |++.|++.|.+++++..++.++.++..++.||+. + |-|. |+......+++.
T Consensus 2 ~~iliid~~dsf~~~-------i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~-g--Gp~~-~~~~~~~~~~i~ 67 (190)
T PRK06895 2 TKLLIINNHDSFTFN-------LVDLIRKLGVPMQVVNVEDLDLDEVENFSHILIS-P--GPDV-PRAYPQLFAMLE 67 (190)
T ss_pred cEEEEEeCCCchHHH-------HHHHHHHcCCcEEEEECCccChhHhccCCEEEEC-C--CCCC-hHHhhHHHHHHH
Confidence 566666 4444433 5556666799999998876556667777765543 3 2233 334444445553
No 264
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=28.76 E-value=34 Score=33.22 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=36.5
Q ss_pred cccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCC---CCCCCCcCCCCCCCCCCHHHHHHHhcccCC
Q 015866 263 YEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM---KNYLPDIHKNTTEVPIKLRTFVELTMDVTS 332 (399)
Q Consensus 263 Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~---~~~~p~~~~~~~~~~~tl~~ll~~~lDl~~ 332 (399)
++||||+-.++.|...=-. .--.+.++.|.+...-+ ..++. -+|||.+.+|++|+||+.
T Consensus 99 fk~Gd~VIp~~a~lGtW~t----~~v~~e~~Li~vd~~~pl~~AAT~~-------VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 99 FKPGDWVIPLSANLGTWRT----EAVFSESDLIKVDKDIPLASAATLS-------VNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred cCCCCeEeecCCCCcccee----eEeecccceEEcCCcCChhhhheec-------cCchHHHHHHHHHHhcCC
Confidence 9999999999998642100 00123445555532111 01222 279999999999999984
No 265
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=28.72 E-value=1.1e+02 Score=27.67 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=28.6
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
+|++.+.+|+ +++.+.|..+ ....|+||.++.|..+.
T Consensus 4 ~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 4 TIVAQERLTH-----DIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred EEEEEeecCC-----CEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 5777778865 5778888765 45789999999998654
No 266
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.64 E-value=88 Score=29.25 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=36.0
Q ss_pred CCeE-EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEE
Q 015866 6 RNKL-LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIF 59 (399)
Q Consensus 6 ~~~v-~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~ 59 (399)
+++| .|-++|..+..+.+.++..+.+.+.|+++..++..+-..+.|.+.+.|++
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v 85 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFV 85 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEE
Confidence 3444 45588888888888899999999999876655543212223666774444
No 267
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.64 E-value=4e+02 Score=24.10 Aligned_cols=89 Identities=16% Similarity=0.280 Sum_probs=55.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC-----CCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l-----~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
.+++.+ ||+. .+-..|+..+.++|+.+.+.+--+ ..++ .+.+.+.+..||- |.-|.-++..-+.++..
T Consensus 71 ~lVi~a-t~d~-~ln~~i~~~a~~~~ilvn~~d~~e--~~~f~~pa~~~~g~l~iaisT~--G~sP~la~~lr~~ie~~- 143 (205)
T TIGR01470 71 FLVIAA-TDDE-ELNRRVAHAARARGVPVNVVDDPE--LCSFIFPSIVDRSPVVVAISSG--GAAPVLARLLRERIETL- 143 (205)
T ss_pred EEEEEC-CCCH-HHHHHHHHHHHHcCCEEEECCCcc--cCeEEEeeEEEcCCEEEEEECC--CCCcHHHHHHHHHHHHh-
Confidence 445555 7774 566788888888887665443222 1222 2445688888876 67787777777666542
Q ss_pred CCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~ 121 (399)
++ ..|+.+......+...+++
T Consensus 144 ---------------l~-~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 144 ---------------LP-PSLGDLATLAATWRDAVKK 164 (205)
T ss_pred ---------------cc-hhHHHHHHHHHHHHHHHHh
Confidence 11 2477777777777776665
No 268
>PRK07574 formate dehydrogenase; Provisional
Probab=28.55 E-value=76 Score=32.05 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.4
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| .+++.+.++|+.+|++.++
T Consensus 189 ~L~gktVGIvG~G--------~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 189 DLEGMTVGIVGAG--------RIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred ecCCCEEEEECCC--------HHHHHHHHHHHhCCCEEEE
Confidence 4889999999976 5789999999999998753
No 269
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=28.48 E-value=5.6e+02 Score=24.93 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred cCCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------C--CCCCeEEEEeecCCCCCCchhHH
Q 015866 5 KRNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDARC-------L--PEEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 5 ~~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l--~~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
+...|.+++.+.+. -.-.+.+-|.+.++++|+.+.+.+.++ +.+. + ...+.+|+.. +. . .+
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~-~~~~e~~~~~~l~~~~vdGiIi~~-~~-~---~~--- 127 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLANTDD-DPEKEREYLETLLQKRVDGLILLG-ER-P---ND--- 127 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEec-CC-C---CH---
Confidence 44567777766666 666788888999999999999988876 3221 1 3567777766 22 1 11
Q ss_pred HHHHHHHhccCCccccCCceEEEEecC--CCCch----hHHHHHHHHHHHHHhCCCeeecc
Q 015866 75 VFWRFLLQKSLSKQWLEGVRYAVFGLG--DSGYQ----KFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 75 ~f~~~L~~~~~~~~~l~~~~~avfGlG--ds~y~----~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.+.+.+.. .+..+.+++-- +..+. ..-.+++.+.+.|.++|.+++.=
T Consensus 128 ~~~~~l~~--------~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~ 180 (333)
T COG1609 128 SLLELLAA--------AGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIAF 180 (333)
T ss_pred HHHHHHHh--------cCCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCceEEE
Confidence 24444433 24566666632 12221 34568889999999999998853
No 270
>PLN03139 formate dehydrogenase; Provisional
Probab=28.31 E-value=83 Score=31.79 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=27.4
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.|.|++++|+|+| .+|+.+.++|+.+|++.++
T Consensus 196 ~L~gktVGIVG~G--------~IG~~vA~~L~afG~~V~~ 227 (386)
T PLN03139 196 DLEGKTVGTVGAG--------RIGRLLLQRLKPFNCNLLY 227 (386)
T ss_pred CCCCCEEEEEeec--------HHHHHHHHHHHHCCCEEEE
Confidence 5889999999975 6789999999999998653
No 271
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=28.26 E-value=47 Score=28.61 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=31.8
Q ss_pred ceEEEEecCCCCch--hHHHHHHHHHHHHHhCCCeeeccceeecCC
Q 015866 93 VRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDDQ 136 (399)
Q Consensus 93 ~~~avfGlGds~y~--~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~ 136 (399)
.+++|+-.||..+. -+..-+..+.++|++.|++........|+.
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~ 46 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDK 46 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCH
Confidence 36888888886553 466667788999999999876544455544
No 272
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=28.22 E-value=96 Score=28.11 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=28.2
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCC--CcccccCCEEEEccCCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSA--AIEYEVGDVLEILPSQD 276 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~--~~~Y~~GD~l~I~P~N~ 276 (399)
+|++.+.+++ ++..+.|+.+.. ...|+||.++.|..+..
T Consensus 2 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~ 42 (234)
T cd06183 2 KLVSKEDISH-----DTRIFRFELPSPDQVLGLPVGQHVELKAPDD 42 (234)
T ss_pred EeEEeEecCC-----CEEEEEEECCCCCCcCCCCcccEEEEEecCC
Confidence 4666677764 467788887642 47899999999986654
No 273
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=27.85 E-value=3.4e+02 Score=25.55 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEe---CCCCCcC---CC-CCCC--eEEEEeecCCC-CCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRP---VDDYDAR---CL-PEED--TVIFVVSTTGQ-GDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~---l~~~~~~---~l-~~~~--~ii~~~sT~g~-G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
...+|+.|.+.+.+.|+++...+ +|.-... -+ ...+ +|=+.+.+... ...+....+|-+.|.+... ..
T Consensus 93 d~elA~~i~~~~~~~g~~~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~~~~~lG~aL~~~i~--~~ 170 (271)
T cd07359 93 DADLARHLLAGLVEDGFDVAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLRRCYALGRALRRAIE--SF 170 (271)
T ss_pred CHHHHHHHHHHHHHcCCCeeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHH--hc
Confidence 35689999999998898543221 2211100 01 1223 33333222211 1234445566666654311 11
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
.++++++|+|+||-+.
T Consensus 171 ~~d~rV~iIaSGdlSH 186 (271)
T cd07359 171 PGDLRVAVLGTGGLSH 186 (271)
T ss_pred CCCCcEEEEecCcccC
Confidence 2578999999998764
No 274
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=27.80 E-value=83 Score=30.96 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=25.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| ..|+.+.++|..+|.+.+
T Consensus 143 ~l~g~~VgIIG~G--------~IG~~vA~~L~~~G~~V~ 173 (330)
T PRK12480 143 PVKNMTVAIIGTG--------RIGAATAKIYAGFGATIT 173 (330)
T ss_pred ccCCCEEEEECCC--------HHHHHHHHHHHhCCCEEE
Confidence 5789999999987 467888888999998765
No 275
>PF13728 TraF: F plasmid transfer operon protein
Probab=27.70 E-value=1.5e+02 Score=27.24 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=38.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP 52 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~ 52 (399)
-.+.++|.|..+-++.+|-.|.....+.|+.+..+++|......++
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp 167 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFP 167 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCC
Confidence 3477889999999999999999999999999999999876544443
No 276
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=27.67 E-value=65 Score=29.55 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=28.3
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCC---cccccCCEEEEccC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAA---IEYEVGDVLEILPS 274 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~---~~Y~~GD~l~I~P~ 274 (399)
+|++.+.+++ +++.+.|..+... ..|+||.++.|.++
T Consensus 5 ~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 5 TVAEVVRETA-----DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred EEEEEEecCC-----CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 6777777764 5778888886322 58999999999976
No 277
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=27.54 E-value=67 Score=24.94 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=32.1
Q ss_pred ECCCch--HHHHHHHHHHHHHhcCCCcEEE------eCCCCCcCCCCCCCeEEEEee
Q 015866 14 ASQTGN--ALDAAERIGRESERRGCPVVVR------PVDDYDARCLPEEDTVIFVVS 62 (399)
Q Consensus 14 ~S~tG~--te~~A~~l~~~l~~~g~~~~v~------~l~~~~~~~l~~~~~ii~~~s 62 (399)
++.+|- |-..|+.|.+.+++.|+++.+- -.+.++.+++...+.+|++..
T Consensus 5 acp~G~Aht~lAae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d 61 (85)
T TIGR00829 5 ACPTGIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAAD 61 (85)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEecc
Confidence 444554 4556799999999999876532 223344456677888887744
No 278
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=27.47 E-value=4.4e+02 Score=25.62 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=32.1
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcC--CCcEEEeCCCCCcCCCCCCCeEEEEeecCCC
Q 015866 9 LLILYASQTGNALDAAERIGRESERRG--CPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ 66 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g--~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~ 66 (399)
-.++||+ |++.-.|+.+...+...+ ..+.+ ..++........+-++|+.|..|+
T Consensus 23 ~I~i~G~--G~S~~~a~~l~~~l~~~~~~~~v~~--~~d~~l~~~~~~~dlvI~iS~SG~ 78 (308)
T TIGR02128 23 EIVICGM--GGSGIAGRIISILLLEKSFQGPVFV--VKDYRLPRFVDGKTLLIAVSYSGN 78 (308)
T ss_pred EEEEEEe--cHHHHHHHHHHHHHHHhCCCccEEE--EcCccccccCCCCeEEEEEcCCCC
Confidence 3557776 788889999998888765 34433 233332222234446666666543
No 279
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=1.1e+02 Score=27.91 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=37.9
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA 48 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~ 48 (399)
.-+.+.|+|+...-++-.+|.++.+.+.+.++++.+.-++..|.
T Consensus 127 ~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D~ 170 (211)
T COG2454 127 EPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNADF 170 (211)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcCH
Confidence 45678999999999999999999999999999988777777663
No 280
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=27.33 E-value=1.1e+02 Score=23.53 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=22.4
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEe-cCC
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFG-LGD 102 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfG-lGd 102 (399)
+.-|+.++..++.|.... -.++.++||| ++|
T Consensus 21 ahNp~s~~a~l~~l~~~~-----~~~~~i~V~G~~~d 52 (91)
T PF02875_consen 21 AHNPDSIRALLEALKELY-----PKGRIIAVFGAMGD 52 (91)
T ss_dssp --SHHHHHHHHHHHHHHC-----TTSEEEEEEEEBTT
T ss_pred CCCHHHHHHHHHHHHHhc-----cCCcEEEEEccccc
Confidence 455788999999987642 2578999999 456
No 281
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=27.32 E-value=2e+02 Score=26.18 Aligned_cols=94 Identities=19% Similarity=0.341 Sum_probs=61.1
Q ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEeC-C---CCCc----------CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 16 QTGNALDAAERIGRESERRGCPVVVRPV-D---DYDA----------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 16 ~tG~te~~A~~l~~~l~~~g~~~~v~~l-~---~~~~----------~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
..||--.+++.|++.|+++|+.|..-.- . +++- ..|..+.-+-++..-+-+|.+.. .
T Consensus 28 ~~~~V~~VG~~L~~~Le~~Gi~vihd~t~~~~~~y~~sY~~Sr~tv~~~l~~~p~i~~viDiHRDs~~~~---~------ 98 (196)
T TIGR02867 28 SEGNITKVGDRLAKELEEKGIGVIHDKTVHDGLNYEQSYDRSRETVKKALKENKDLKYIIDLHRDSVRRK---K------ 98 (196)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEeCCccCCccHHHHHHHHHHHHHHHHHHCCCceEEEEeecCCCCCC---c------
Confidence 4688999999999999999987643221 1 1110 01334555556666666665443 0
Q ss_pred hccCCccccCCceE----EEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 82 QKSLSKQWLEGVRY----AVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 82 ~~~~~~~~l~~~~~----avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
......|+.+ .|.|..+.+|..--.++..|.+.+.+.
T Consensus 99 ----~t~~inG~~~Aki~fVvG~~np~~~~N~~fA~~l~~~~~~~ 139 (196)
T TIGR02867 99 ----TTVNINGESVAKVMFVIGKNNPHFEKNLQLANKLHAKLEKK 139 (196)
T ss_pred ----ceEEECCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1113567777 888988888877777888888888773
No 282
>PRK13337 putative lipid kinase; Reviewed
Probab=27.16 E-value=4.5e+02 Score=25.19 Aligned_cols=85 Identities=15% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCeEEEEEECCCchHH--HHHHHHHHHHHhcCCCcEEEeCCCC-CcC----CC--CCCCeEEEEeecCCCCCCchhHHHH
Q 015866 6 RNKLLILYASQTGNAL--DAAERIGRESERRGCPVVVRPVDDY-DAR----CL--PEEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te--~~A~~l~~~l~~~g~~~~v~~l~~~-~~~----~l--~~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
|+++.|+|--..|+.. +...++.+.|.+.|++++++....- +.. ++ ..++. |+++. |+|. ....
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~-vvv~G--GDGT----l~~v 73 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDL-VIAAG--GDGT----LNEV 73 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCE-EEEEc--CCCH----HHHH
Confidence 4689999999888754 5666778889999988776655421 111 11 23454 33443 7885 4445
Q ss_pred HHHHHhccCCccccCCceEEEEecCCC
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGDS 103 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGds 103 (399)
+.-|.... ....++|+-.|.-
T Consensus 74 v~gl~~~~------~~~~lgiiP~GT~ 94 (304)
T PRK13337 74 VNGIAEKE------NRPKLGIIPVGTT 94 (304)
T ss_pred HHHHhhCC------CCCcEEEECCcCH
Confidence 55553211 2346888877744
No 283
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=26.93 E-value=2.4e+02 Score=28.80 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=43.6
Q ss_pred CCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHH
Q 015866 36 CPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115 (399)
Q Consensus 36 ~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l 115 (399)
+..=++++++.....+.+. -||-|+ ..++.+.+.. +..+.|++++|+|.| ..|+.+
T Consensus 155 L~~Pvi~vnds~~K~~fDn--------~yg~g~------s~~~~i~r~t--~~~l~Gk~VvViG~G--------~IG~~v 210 (406)
T TIGR00936 155 LKFPAINVNDAYTKSLFDN--------RYGTGQ------STIDGILRAT--NLLIAGKTVVVAGYG--------WCGKGI 210 (406)
T ss_pred CCCcEEEecchhhchhhhc--------ccccch------hHHHHHHHhc--CCCCCcCEEEEECCC--------HHHHHH
Confidence 4555677777655544332 234443 2334443321 124789999999976 378899
Q ss_pred HHHHHhCCCeeec
Q 015866 116 DNRLLDLGATAVV 128 (399)
Q Consensus 116 ~~~L~~lGa~~~~ 128 (399)
.++++.+|++.++
T Consensus 211 A~~ak~~Ga~ViV 223 (406)
T TIGR00936 211 AMRARGMGARVIV 223 (406)
T ss_pred HHHHhhCcCEEEE
Confidence 9999999998654
No 284
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=26.86 E-value=2.1e+02 Score=25.98 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=33.8
Q ss_pred CeEEEE-EECCCchHHHHHHHHHHHHHhcC-CCcEEEeCCCCCcCCCC--CCCeEEEEeec---CCCCCCchhHHHHHHH
Q 015866 7 NKLLIL-YASQTGNALDAAERIGRESERRG-CPVVVRPVDDYDARCLP--EEDTVIFVVST---TGQGDTPDSMKVFWRF 79 (399)
Q Consensus 7 ~~v~Il-Y~S~tG~te~~A~~l~~~l~~~g-~~~~v~~l~~~~~~~l~--~~~~ii~~~sT---~g~G~~p~~~~~f~~~ 79 (399)
++++|+ |+| .....|++.+++.| .-.++..-+. +...+. +.+.+|+.-+. |.++. .+....++
T Consensus 2 ~~ilIld~g~------q~~~li~r~~re~g~v~~e~~~~~~-~~~~~~~~~~~giIlsGgp~sv~~~~~---w~~~~~~~ 71 (198)
T COG0518 2 RKILILDFGG------QYLGLIARRLRELGYVYSEIVPYTG-DAEELPLDSPDGIIISGGPMSVYDEDP---WLPREKDL 71 (198)
T ss_pred cEEEEEeCCC------cHhHHHHHHHHHcCCceEEEEeCCC-CcccccccCCCEEEEcCCCCCCccccc---cchhHHHH
Confidence 345555 566 44566777777778 4455443332 223332 33555554443 43322 45566666
Q ss_pred HHhc
Q 015866 80 LLQK 83 (399)
Q Consensus 80 L~~~ 83 (399)
+.+.
T Consensus 72 i~~~ 75 (198)
T COG0518 72 IKDA 75 (198)
T ss_pred HHHh
Confidence 6554
No 285
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.80 E-value=4e+02 Score=26.01 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+..+.+++.+.. . .....++++|+.. |..| .....+.+.+.+++.|.+.+.
T Consensus 122 ~~~~l~~~~~~~~-~-~~~~~~kvaiv~~-~~~~--g~~~~~~~~~~~~~~G~~vv~ 173 (351)
T cd06334 122 QARALVQYIAEQE-G-GKLKGKKIALVYH-DSPF--GKEPIEALKALAEKLGFEVVL 173 (351)
T ss_pred HHHHHHHHHHHhc-c-cCCCCCeEEEEeC-CCcc--chhhHHHHHHHHHHcCCeeee
Confidence 3455666665421 0 0113688999986 3334 345667788889999988663
No 286
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=26.75 E-value=75 Score=33.03 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=28.0
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|.| .+|+.+.++|+.+|++.++
T Consensus 250 ~~LaGKtVgVIG~G--------~IGr~vA~rL~a~Ga~ViV 282 (476)
T PTZ00075 250 VMIAGKTVVVCGYG--------DVGKGCAQALRGFGARVVV 282 (476)
T ss_pred CCcCCCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 36899999999976 2789999999999998653
No 287
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=26.54 E-value=1e+02 Score=28.60 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=26.4
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+++++++|.|+| ..++.+.+.|.+.|++.+
T Consensus 27 ~~l~~~~v~I~G~G--------~VG~~~a~~L~~~g~~vv 58 (227)
T cd01076 27 IGLAGARVAIQGFG--------NVGSHAARFLHEAGAKVV 58 (227)
T ss_pred CCccCCEEEEECCC--------HHHHHHHHHHHHCCCEEE
Confidence 35899999999976 567777788888899886
No 288
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=26.52 E-value=1.2e+02 Score=27.96 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.1
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCC-C-cccccCCEEEEccCCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSA-A-IEYEVGDVLEILPSQD 276 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~-~-~~Y~~GD~l~I~P~N~ 276 (399)
+|++++.+++ ++++|+|+.+.. . ..|+||.++.|...++
T Consensus 10 ~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 10 VVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 7888888864 488899987643 2 6899999999995543
No 289
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=26.35 E-value=5.5e+02 Score=24.77 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=29.1
Q ss_pred EeecCCCCCCchhH-HHHHHHHHhccCCccccCCceEEEEecCCCC--chhHHHHHHHHHHHHHh
Q 015866 60 VVSTTGQGDTPDSM-KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG--YQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 60 ~~sT~g~G~~p~~~-~~f~~~L~~~~~~~~~l~~~~~avfGlGds~--y~~f~~~~k~l~~~L~~ 121 (399)
.+..||.|+.|..+ ..|+..+ +.+..+.++|-|+.. |-+--.+++.+...+..
T Consensus 187 ~~~v~Gp~~~~~~~~~~~~~~~---------~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~ 242 (355)
T PRK10217 187 CSNNYGPYHFPEKLIPLMILNA---------LAGKPLPVYGNGQQIRDWLYVEDHARALYCVATT 242 (355)
T ss_pred eeeeeCCCCCcccHHHHHHHHH---------hcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhc
Confidence 34457777765432 1222222 345567788988753 44445566666655554
No 290
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=25.72 E-value=1.5e+02 Score=32.20 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeC--CCCCcCCC-CCCCeEEEEeecCCCCC--Cc----h---hHHHHHHHHHhccCCc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPV--DDYDARCL-PEEDTVIFVVSTTGQGD--TP----D---SMKVFWRFLLQKSLSK 87 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l--~~~~~~~l-~~~~~ii~~~sT~g~G~--~p----~---~~~~f~~~L~~~~~~~ 87 (399)
.+.+.++..+.+.+.|+++.+-.. .+...+++ ..++.||+.+.+...-. .| + .+..|++..... .
T Consensus 242 ~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~---~ 318 (652)
T PRK12814 242 PESVIDADIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALG---T 318 (652)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCcccCccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcC---C
Confidence 344555555666777765432221 01112222 24888998888762111 11 1 233444443211 1
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
....+++++|+|.|+... .+...+.++|++.+
T Consensus 319 ~~~~gk~VvVIGgG~~a~--------e~A~~l~~~Ga~~V 350 (652)
T PRK12814 319 ALHPGKKVVVIGGGNTAI--------DAARTALRLGAESV 350 (652)
T ss_pred cccCCCeEEEECCCHHHH--------HHHHHHHHcCCCeE
Confidence 235689999999986543 23345557787644
No 291
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=25.63 E-value=83 Score=29.25 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=26.4
Q ss_pred eeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 235 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 235 ~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
++.+.+++ ++++|.|..+.....|+||.++.|..+.
T Consensus 2 ~~~~~~t~-----~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 37 (246)
T cd06218 2 LSNREIAD-----DIYRLVLEAPEIAAAAKPGQFVMLRVPD 37 (246)
T ss_pred cceeEecC-----CeEEEEEeCcchhccCCCCcEEEEEeCC
Confidence 34555653 5888888877435789999999998764
No 292
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.58 E-value=4.2e+02 Score=23.18 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=30.6
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcC---CCcEEEeCCCCCc-CCCCCCCeEEEEeec
Q 015866 9 LLILYASQTGNALDAAERIGRESERRG---CPVVVRPVDDYDA-RCLPEEDTVIFVVST 63 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g---~~~~v~~l~~~~~-~~l~~~~~ii~~~sT 63 (399)
+.|+-.+..-. +..+.+.+++.| +++++++..+-+. .++..++.+|+..+-
T Consensus 2 i~il~~~~~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~ 56 (188)
T cd01741 2 ILILQHDTPEG----PGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGP 56 (188)
T ss_pred EEEEECCCCCC----cchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCC
Confidence 45554444433 444455555566 6788888766443 456788877776554
No 293
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=25.42 E-value=1.6e+02 Score=26.84 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.++.|++.+...... ..+.+.+++++| ....+.|++.|.+..
T Consensus 188 ~v~~~~~~~~~~~~~-~~~~~~~~~aiG-------------~~Ta~~l~~~G~~~~ 229 (249)
T PRK05928 188 TVRAFFSLAPELGRR-EWLLSCKAVVIG-------------ERTAEALRELGIKVI 229 (249)
T ss_pred HHHHHHHHhcccchh-HHHhCCeEEEeC-------------HHHHHHHHHcCCCcc
Confidence 466677766432110 023455666665 456677888886654
No 294
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=25.42 E-value=1.7e+02 Score=28.10 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=36.9
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
|.-+ +..-|++.|+.... .++++++.|+|.| ++++.+...|..+|+.++.
T Consensus 103 G~NT-D~~Gf~~~l~~~~~---~~~~k~vlvlGaG--------GaarAi~~~l~~~g~~~i~ 152 (288)
T PRK12749 103 GYNT-DGTGHIRAIKESGF---DIKGKTMVLLGAG--------GASTAIGAQGAIEGLKEIK 152 (288)
T ss_pred EEec-CHHHHHHHHHhcCC---CcCCCEEEEECCc--------HHHHHHHHHHHHCCCCEEE
Confidence 3334 37789988875432 4688999999986 5578888888889987753
No 295
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=25.42 E-value=1.4e+02 Score=22.70 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=23.2
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.+++++|+|.| .+++.+...|.+.|...+
T Consensus 20 ~~~~~~v~i~G~G--------~~g~~~a~~l~~~~~~~v 50 (86)
T cd05191 20 SLKGKTVVVLGAG--------EVGKGIAKLLADEGGKKV 50 (86)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHHHcCCCEE
Confidence 4789999999987 456777777888764443
No 296
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=25.36 E-value=1.1e+02 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 16 QTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 16 ~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
..|-++.....+++.|.+.|++|.++....-
T Consensus 17 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 17 AYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred ccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 7899999999999999999999998886553
No 297
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.34 E-value=6.6e+02 Score=24.72 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=52.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc--------CCCCCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA--------RCLPEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~--------~~l~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
.+++.|+.+|.+ ..+|++|++.|. ++..-..+..|.- +++... -++++.|++. ...++ ++
T Consensus 19 ~~~~~i~~g~~~---~~la~~ia~~lg---~~l~~~~~~~FpDGE~~v~i~~~vrg~-~V~ivqs~~~--p~nd~---l~ 86 (330)
T PRK02812 19 NNRLRLFSGSSN---PALAQEVARYLG---MDLGPMIRKRFADGELYVQIQESIRGC-DVYLIQPTCA--PVNDH---LM 86 (330)
T ss_pred CCCEEEEECCCC---HHHHHHHHHHhC---CCceeeEEEECCCCCEEEEeCCCCCCC-EEEEECCCCC--CccHH---HH
Confidence 456677776544 788888888873 3332222333321 123333 4556666541 11233 44
Q ss_pred HHHHhccCCccccCCc-eEEEEe-cC----CCCchhH-HHHHHHHHHHHHhCCCeeec
Q 015866 78 RFLLQKSLSKQWLEGV-RYAVFG-LG----DSGYQKF-NFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~-~~avfG-lG----ds~y~~f-~~~~k~l~~~L~~lGa~~~~ 128 (399)
+.|.-...-+ ...-+ -.+|+- +| |+....- .-.+|.+.+.|...|+.+++
T Consensus 87 eLll~~~alr-~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vi 143 (330)
T PRK02812 87 ELLIMVDACR-RASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVL 143 (330)
T ss_pred HHHHHHHHHH-HhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEE
Confidence 4332110000 01222 334443 33 2111110 12678899999999998875
No 298
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=25.04 E-value=99 Score=28.14 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.2
Q ss_pred eeEEEEEEecCCCcccccCCEEEEccCCC
Q 015866 248 DVHHFEFEFVSAAIEYEVGDVLEILPSQD 276 (399)
Q Consensus 248 ~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~ 276 (399)
++.+++|+.+ ....|+||.++.|..++.
T Consensus 10 ~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~ 37 (232)
T cd06190 10 DVAEFRFALD-GPADFLPGQYALLALPGV 37 (232)
T ss_pred CEEEEEEEcC-CccccCCCCEEEEECCCC
Confidence 5788888876 456899999999987643
No 299
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=24.90 E-value=1.2e+02 Score=27.56 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=27.3
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCC-cccccCCEEEEccC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPS 274 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~-~~Y~~GD~l~I~P~ 274 (399)
+|++.+.+++ +++++.|..+... ..|+||.++.|.-+
T Consensus 2 ~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 39 (231)
T cd06215 2 RCVKIIQETP-----DVKTFRFAAPDGSLFAYKPGQFLTLELE 39 (231)
T ss_pred eEEEEEEcCC-----CeEEEEEECCCCCcCCcCCCCeEEEEEe
Confidence 5667777764 5788888877432 78999999998743
No 300
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.86 E-value=85 Score=30.19 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPV 43 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l 43 (399)
|++.|.=|...|... .|..++++|.++|+++.++.-
T Consensus 1 ~~i~~~~g~~~g~~~-~~~~La~~L~~~g~eV~vv~~ 36 (348)
T TIGR01133 1 KKVVLAAGGTGGHIF-PALAVAEELIKRGVEVLWLGT 36 (348)
T ss_pred CeEEEEeCccHHHHh-HHHHHHHHHHhCCCEEEEEeC
Confidence 478888888888888 888999999999999988754
No 301
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=24.81 E-value=3.1e+02 Score=27.28 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=46.9
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------CCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+|-||++...+.+.|+.| .+.|+.++|+++..+.+-| +.+.+.||++=-.+-.|.. +....++|.+
T Consensus 233 Iia~G~~v~~Al~Aa~~L----~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGl---Gs~Va~~l~e 305 (356)
T PLN02683 233 IVAFSKMVGYALKAAEIL----AKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGV---GAEICASVVE 305 (356)
T ss_pred EEEccHHHHHHHHHHHHH----HhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCH---HHHHHHHHHH
Confidence 444776666666666555 5579999999998876543 1355666666444434443 3344444443
Q ss_pred ccCCccccCCceEEEEecCCC
Q 015866 83 KSLSKQWLEGVRYAVFGLGDS 103 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds 103 (399)
..+. +-..++..+|.=|.
T Consensus 306 ~~f~---~~~~~v~rlg~~d~ 323 (356)
T PLN02683 306 ESFD---YLDAPVERIAGADV 323 (356)
T ss_pred hchh---ccCCCeEEeccCCc
Confidence 3210 11235666666443
No 302
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=24.76 E-value=3.1e+02 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=30.3
Q ss_pred EEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 9 LLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 9 v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
|+++..+. .|.++..+..+++.|.+.|+++.++.....
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 55555554 788999999999999889999998877654
No 303
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=24.59 E-value=1.8e+02 Score=28.95 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------CCCCCeEEEEeecCCCCC
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------LPEEDTVIFVVSTTGQGD 68 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l~~~~~ii~~~sT~g~G~ 68 (399)
++|-|||+.+.+.+.|+.+. +.|+++.++++..+.+-+ +.+.+.||++=-.+-.|.
T Consensus 237 ~Iia~Gs~~~~aleAa~~L~----~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GG 299 (355)
T PTZ00182 237 TIVGYGSQVHVALKAAEELA----KEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCG 299 (355)
T ss_pred EEEEeCHHHHHHHHHHHHHH----hCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCC
Confidence 45669988888888777664 469999999887765432 235566666544433344
No 304
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.58 E-value=2e+02 Score=33.03 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=32.5
Q ss_pred CHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcc
Q 015866 319 KLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPE 363 (399)
Q Consensus 319 tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~ 363 (399)
+..++|..=+++.. =.+.|.+.+|+-+.|+.-|+-+.+|+..|
T Consensus 860 ~~~eil~~Ai~mE~--~g~~FY~~~A~~a~~~~~K~lF~~LA~eE 902 (1006)
T PRK12775 860 AALEAIRTAFEIEL--GGMAFYARAAKETSDPVLKELFLKFAGME 902 (1006)
T ss_pred cHHHHHHHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566666666553 46689999999999999999999888643
No 305
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=24.50 E-value=1.6e+02 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=32.7
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVR 41 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~ 41 (399)
++++++++=||--||+-.++.++.+.|+++|+++++.
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~ 541 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMD 541 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4678999999999999999999999999999976543
No 306
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=24.35 E-value=6.4e+02 Score=24.19 Aligned_cols=96 Identities=10% Similarity=0.168 Sum_probs=63.0
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
+++++.|+=++.+|.|. +|..+....... ..+.+|++ +-|+-+..+..|++.+....
T Consensus 68 ~GQr~~If~~~G~GKTt-La~~i~~~i~~~------------------~~~~~V~~----~iGer~~Ev~e~~~~~~~~~ 124 (274)
T cd01133 68 KGGKIGLFGGAGVGKTV-LIMELINNIAKA------------------HGGYSVFA----GVGERTREGNDLYHEMKESG 124 (274)
T ss_pred cCCEEEEecCCCCChhH-HHHHHHHHHHhc------------------CCCEEEEE----EeccCcHHHHHHHHHHHhcC
Confidence 46889999999999988 666666655421 11233332 45788889999999986542
Q ss_pred CCccccCCceEEEEecCCCCch-hH--HHHHHHHHHHHHhC-CCeeec
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQ-KF--NFVAKKLDNRLLDL-GATAVV 128 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~-~f--~~~~k~l~~~L~~l-Ga~~~~ 128 (399)
.-.+.+.|++..|..-. ++ ..++-.+.+.|... |-.+++
T Consensus 125 -----~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~ 167 (274)
T cd01133 125 -----VLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLL 167 (274)
T ss_pred -----CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 23456777777666433 22 34666778888765 766653
No 307
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=24.28 E-value=1.4e+02 Score=29.70 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=46.5
Q ss_pred eCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHH----HHHHhcc----------------CCccccCCceEEEEecC
Q 015866 42 PVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFW----RFLLQKS----------------LSKQWLEGVRYAVFGLG 101 (399)
Q Consensus 42 ~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~----~~L~~~~----------------~~~~~l~~~~~avfGlG 101 (399)
-+|++|..-..++..+||=+|++.- -.+.++. -.|.+.- .-.-.+.|+..+|+|+|
T Consensus 80 G~dNVDL~AAte~gi~Vvn~P~~Ns----~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~G 155 (406)
T KOG0068|consen 80 GVDNVDLKAATENGILVVNTPTANS----RSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLG 155 (406)
T ss_pred CccccChhhHHhCCeEEEeCCCCCh----HHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecc
Confidence 3455544444567788888888732 1233332 2222210 01224779999999976
Q ss_pred CCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 102 DSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 102 ds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+..+..+++.+|.+.+.
T Consensus 156 --------rIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 156 --------RIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred --------cchHHHHHHHHhcCceEEe
Confidence 5678999999999988763
No 308
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.26 E-value=1.7e+02 Score=23.76 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE 53 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~ 53 (399)
.++-+++.-|++|+|+.+.+.+. .++++|.+ ++-+.+.....+.+
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~-~a~~~g~~--vi~iT~~~~s~la~ 90 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAK-FAKEKGAT--VIGLTDDEDSPLAK 90 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHH-HHHHcCCe--EEEEECCCCCcHHH
Confidence 34567888999999999988774 46777854 34443333334443
No 309
>PLN02494 adenosylhomocysteinase
Probab=24.22 E-value=1.5e+02 Score=30.93 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 76 f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+++.|.+.. +..+.|++++|+|.| ..|+.+.++++.+|++.++
T Consensus 240 ~~d~i~r~t--~i~LaGKtVvViGyG--------~IGr~vA~~aka~Ga~VIV 282 (477)
T PLN02494 240 LPDGLMRAT--DVMIAGKVAVICGYG--------DVGKGCAAAMKAAGARVIV 282 (477)
T ss_pred HHHHHHHhc--CCccCCCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 455554431 224789999999976 4788999999999997654
No 310
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=24.22 E-value=2.5e+02 Score=23.35 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=36.0
Q ss_pred EEEECCCchHHH--HHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeec
Q 015866 11 ILYASQTGNALD--AAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 11 IlY~S~tG~te~--~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT 63 (399)
|.+.|..|.+-+ +|..++..+.++|..+.++|+|-. ...+. ++.+|+=++-
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~-~~~~~-yd~VIiD~p~ 54 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLG-LANLD-YDYIIIDTGA 54 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC-CCCCC-CCEEEEECCC
Confidence 455666666666 788889988889999999998732 22333 7777776663
No 311
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=24.21 E-value=6.5e+02 Score=24.27 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+....+++... ...+++++++- +|.+-....+.+.+.+++.|.+.+.
T Consensus 120 ~~~~~~~~~~~------~g~k~vaii~~---d~~~g~~~~~~~~~~~~~~G~~vv~ 166 (348)
T cd06355 120 IIPAVDWLMSN------KGGKRFYLVGS---DYVYPRTANKILKAQLESLGGEVVG 166 (348)
T ss_pred HHHHHHHHHhc------cCCCeEEEECC---cchHHHHHHHHHHHHHHHcCCeEEe
Confidence 34556666432 24578999875 3444456677888888999988764
No 312
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=24.16 E-value=1.5e+02 Score=28.93 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=38.0
Q ss_pred EEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 59 FVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 59 ~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
++-+--|.|+.| .+.+++.+--.. ..+.+.|+++|+.| |= .+...++..-..|..+|++..
T Consensus 128 vINaGDG~~qHP--TQ~LLDl~TI~~-~~G~~~gl~iaivG--Dl---khsRva~S~~~~L~~~ga~v~ 188 (316)
T COG0540 128 VINAGDGSHQHP--TQALLDLYTIRE-EFGRLDGLKIAIVG--DL---KHSRVAHSNIQALKRFGAEVY 188 (316)
T ss_pred eEECCCCCCCCc--cHHHHHHHHHHH-HhCCcCCcEEEEEc--cc---cchHHHHHHHHHHHHcCCEEE
Confidence 333333444444 344555442111 12358999999998 33 357788999999999997653
No 313
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=24.04 E-value=2.8e+02 Score=21.67 Aligned_cols=67 Identities=7% Similarity=0.051 Sum_probs=43.5
Q ss_pred CCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHh---c-CCCCHHHHhhh
Q 015866 317 PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQ---K-ERRTVLEVSFG 385 (399)
Q Consensus 317 ~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~---~-~~~tlldvL~~ 385 (399)
.+-+..++.+.+. .+ +-+......+-...+..+...+|..+....|...|..+|. . ....|+++|+.
T Consensus 19 ~l~~~~v~~~L~~-~g-vlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La~lL~~ 89 (90)
T cd08332 19 ELVLDELLIHLLQ-KD-ILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLCDLLEK 89 (90)
T ss_pred HCCHHHHHHHHHH-cC-CCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHHHHHhh
Confidence 3445556666655 34 6777777777666666666677777776668778877762 1 23467777664
No 314
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=23.97 E-value=6.6e+02 Score=24.25 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCCC----------CCCCeEEEEeecCC---------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----------PEEDTVIFVVSTTG--------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~l----------~~~~~ii~~~sT~g--------- 65 (399)
.+++.++....-..++.+++.=.+.+++.|+....+++.+. +.++| ++.+.|++=-|-..
T Consensus 30 ~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~ 109 (283)
T COG0190 30 KPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQ 109 (283)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHh
Confidence 46788888888899999999888999999999998888532 21111 12233444333331
Q ss_pred --------CCCCchhHHHH---------------HHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhC
Q 015866 66 --------QGDTPDSMKVF---------------WRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (399)
Q Consensus 66 --------~G~~p~~~~~f---------------~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~l 122 (399)
+|-.|-|+.++ ++.|+... ..+.|+++.|+|-+ +-.||=+...|.+.
T Consensus 110 ~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~---i~l~Gk~~vVVGrS-------~iVGkPla~lL~~~ 179 (283)
T COG0190 110 AIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYG---IDLRGKNVVVVGRS-------NIVGKPLALLLLNA 179 (283)
T ss_pred hcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhC---CCCCCCEEEEECCC-------CcCcHHHHHHHHhC
Confidence 23333333333 33333332 25899999999965 33578888889988
Q ss_pred CCeee
Q 015866 123 GATAV 127 (399)
Q Consensus 123 Ga~~~ 127 (399)
+|+.-
T Consensus 180 naTVt 184 (283)
T COG0190 180 NATVT 184 (283)
T ss_pred CCEEE
Confidence 88763
No 315
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=23.87 E-value=89 Score=25.53 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-CCCCCeEEEEeecCCCC
Q 015866 18 GNALDAAERIGRESERRGCPVVVRPVDDYDARC-LPEEDTVIFVVSTTGQG 67 (399)
Q Consensus 18 G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-l~~~~~ii~~~sT~g~G 67 (399)
|-++.+...|++.|.+.|++|+++......... ......-+.-.+..+.+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRP 51 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SS
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccc
Confidence 668889999999999999999988765543322 22334444455555443
No 316
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=23.81 E-value=2.6e+02 Score=26.50 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC--cCCCCCCCeEEEEee-cCC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVS-TTG 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~--~~~l~~~~~ii~~~s-T~g 65 (399)
+++|.|+-..-++.-+.+ .+.+++.|+++.++.+.+.. ..++.+++.|||... ++|
T Consensus 3 ~~kvaVl~~pG~n~d~e~----~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~g 61 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDET----VKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAG 61 (261)
T ss_pred CCEEEEEeCCCCCCHHHH----HHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcc
Confidence 357777776655544444 45666689999888775422 134667888777766 443
No 317
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=23.76 E-value=99 Score=28.41 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=31.4
Q ss_pred eeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCC-HHHHHHHHHHcCCC
Q 015866 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD-PAAVDTFIQRCNLD 290 (399)
Q Consensus 234 v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~-~~~V~~~l~~l~l~ 290 (399)
|++.+.+|+ +++.+.|..+. ...|+||.++.|.-.+. ...+.+-......+
T Consensus 2 v~~~~~~t~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~ 53 (241)
T cd06195 2 VLKRRDWTD-----DLFSFRVTRDI-PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAP 53 (241)
T ss_pred eEEEEEcCC-----CEEEEEEcCCC-CCccCCCCeEEEeccCCCCCeeeecccccCCC
Confidence 556666765 37777777653 67899999999964332 33344444433333
No 318
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=23.71 E-value=92 Score=29.33 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=31.5
Q ss_pred eEEEEEEC---CCchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 8 KLLILYAS---QTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 8 ~v~IlY~S---~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
+|+++..+ ..|.++..+..+++.|.+.|+++.++.....
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 35555555 4789999999999999999999999887654
No 319
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=23.68 E-value=1.8e+02 Score=27.81 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
+..-|+..|+... ..++++++.|+|.| ++++.+-..|.++|++.+
T Consensus 110 D~~G~~~~l~~~~---~~~~~k~vlIlGaG--------Gaaraia~aL~~~G~~~I 154 (284)
T PRK12549 110 DWSGFAESFRRGL---PDASLERVVQLGAG--------GAGAAVAHALLTLGVERL 154 (284)
T ss_pred CHHHHHHHHHhhc---cCccCCEEEEECCc--------HHHHHHHHHHHHcCCCEE
Confidence 3778998886432 13678999999986 578888889999998764
No 320
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.60 E-value=1.1e+02 Score=29.36 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+++.+.+.|..+|++..
T Consensus 148 ~l~gk~v~IiG~G--------~iG~avA~~L~~~G~~V~ 178 (287)
T TIGR02853 148 TIHGSNVMVLGFG--------RTGMTIARTFSALGARVF 178 (287)
T ss_pred CCCCCEEEEEcCh--------HHHHHHHHHHHHCCCEEE
Confidence 5789999999975 578999999999998643
No 321
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.52 E-value=4.9e+02 Score=22.54 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=47.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
..+|| .|++.-+|+.++..+...|..+.... +.....+.+.+++|+++- . |..+ ...+..+.+++.
T Consensus 33 I~i~G--~G~S~~~A~~~~~~l~~~g~~~~~~~--~~~~~~~~~~Dv~I~iS~-s--G~t~-~~i~~~~~ak~~------ 98 (179)
T TIGR03127 33 IFVAG--AGRSGLVGKAFAMRLMHLGFNVYVVG--ETTTPSIKKGDLLIAISG-S--GETE-SLVTVAKKAKEI------ 98 (179)
T ss_pred EEEEe--cCHHHHHHHHHHHHHHhCCCeEEEeC--CcccCCCCCCCEEEEEeC-C--CCcH-HHHHHHHHHHHC------
Confidence 45555 46778999999999988887765542 322334556666555553 3 4433 466666666543
Q ss_pred cCCceEEEEecCCCC
Q 015866 90 LEGVRYAVFGLGDSG 104 (399)
Q Consensus 90 l~~~~~avfGlGds~ 104 (399)
..+.++|-+.+++.
T Consensus 99 -g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 99 -GATVAAITTNPEST 112 (179)
T ss_pred -CCeEEEEECCCCCc
Confidence 12345555655554
No 322
>cd08496 PBP2_NikA_DppA_OppA_like_9 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA can bind peptides of a wide range of lengths (2-35 amino-acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most
Probab=23.47 E-value=2e+02 Score=29.14 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=29.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
.++.|.|.+ ...+.+|+.|++.|++.|+++++..++.
T Consensus 316 ~~l~i~~~~--~~~~~~a~~i~~~l~~iGi~v~~~~~~~ 352 (454)
T cd08496 316 FSLTIPTGA--QNADTLAEIVQQQLAKVGIKVTIKPLTG 352 (454)
T ss_pred ceEEEEecC--CchhHHHHHHHHHHHHcCceEEEEEech
Confidence 356677765 6788999999999999999998877654
No 323
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=23.45 E-value=1.6e+02 Score=21.46 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=27.0
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPV 43 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l 43 (399)
+|.++|++--+.+..+...+.+.+.+.+..+.+..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v 37 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYI 37 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEE
Confidence 478899999999999999988877665544444433
No 324
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.40 E-value=1.4e+02 Score=29.61 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=36.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------CCCCCeEEEEeec
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------LPEEDTVIFVVST 63 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l~~~~~ii~~~sT 63 (399)
..-++|.|||.++.++..++.+. +.|+++.++++..+.+-+ +.+.+.|+++=-+
T Consensus 247 ad~~iva~Gs~~~~a~eA~~~L~----~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n 307 (352)
T PRK07119 247 AELVLVAYGTSARIAKSAVDMAR----EEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS 307 (352)
T ss_pred CCEEEEEcCccHHHHHHHHHHHH----HcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC
Confidence 34567779999999888887764 468888888876654321 2456666666444
No 325
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=23.39 E-value=2.5e+02 Score=28.44 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=31.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.++|+++++.|-||-.|+.-+.+++.+-..+..+|++..
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~ 222 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 222 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEE
Confidence 378899999998776666556788888888899998653
No 326
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=23.20 E-value=1.2e+02 Score=27.21 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=26.2
Q ss_pred eeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCC
Q 015866 235 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 276 (399)
Q Consensus 235 ~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~ 276 (399)
++.+.+++ +++++.|..+. ...|+||.++.|..++.
T Consensus 2 ~~~~~~~~-----~~~~~~l~~~~-~~~~~pGq~i~l~~~~~ 37 (224)
T cd06187 2 VSVERLTH-----DIAVVRLQLDQ-PLPFWAGQYVNVTVPGR 37 (224)
T ss_pred eeeeecCC-----CEEEEEEEeCC-CCCcCCCceEEEEcCCC
Confidence 34455554 58888888773 47899999999986543
No 327
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=23.12 E-value=3.6e+02 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=28.4
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~ 274 (399)
+|++++.+++ +++.+.|..+.....|+||-.+.|.+.
T Consensus 652 ~I~~~~~lt~-----dv~~~~l~~p~~~~~~~PGQFv~L~~~ 688 (944)
T PRK12779 652 TIVGKVQLAG-----GIVEFTVRAPMVARSAQAGQFVRVLPW 688 (944)
T ss_pred EEEEEEEecC-----CEEEEEEeCCCccccCCCCceEEEEeC
Confidence 7888888875 577888876643457999999999864
No 328
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=22.92 E-value=1.4e+02 Score=26.96 Aligned_cols=39 Identities=23% Similarity=0.147 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEee
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~s 62 (399)
-...+....+.|.+.|+++++++.++ +|..|++||+-..
T Consensus 28 y~~~~~~~y~al~~~gi~vDvv~~~~----dL~~Ykllv~P~~ 66 (207)
T PF08532_consen 28 YRDQVRGWYRALRELGIPVDVVSPDD----DLSGYKLLVLPSL 66 (207)
T ss_dssp HHHHHHHHHHHHHTTT--EEEE-TTS------TT-SEEEES--
T ss_pred HHHHHHHHHHHHHHcCCceEEecCcC----CcccCcEEEEeeE
Confidence 34556678888999999999999886 6778886664333
No 329
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.84 E-value=1.6e+02 Score=25.69 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=33.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeec
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT 63 (399)
++=+++.-|.+|+|..+-+.+ +.++++|.++ +-+.+.....+.+..-+++.+++
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~-~~ak~~g~~i--I~IT~~~~s~la~~ad~~l~~~~ 128 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAA-EKAKKAGAKV--VLITSNPDSPLAKLADVVVVIPA 128 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHH-HHHHHCCCeE--EEEECCCCCchHHhCCEEEEeCC
Confidence 344678889999999997655 6678888554 44444333445443334555554
No 330
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=22.83 E-value=3.4e+02 Score=26.86 Aligned_cols=84 Identities=13% Similarity=0.290 Sum_probs=48.3
Q ss_pred CCeEEEEEECCCchHHH---HHHHHHHHHHhcCCCcEEEeCCCCCcCC-------CCCCCeEEEEeecCCCCCCchhHHH
Q 015866 6 RNKLLILYASQTGNALD---AAERIGRESERRGCPVVVRPVDDYDARC-------LPEEDTVIFVVSTTGQGDTPDSMKV 75 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~---~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l~~~~~ii~~~sT~g~G~~p~~~~~ 75 (399)
-+++.|+|.+.. ..+. .++.+.+.+++.|+.+......+....+ +.....+|+++..+ +.+..
T Consensus 137 W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~rvii~~~~~------~~~~~ 209 (387)
T cd06386 137 WRSALLVYEDDK-QERNCYFTLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASERVVIMCAGA------DTIRS 209 (387)
T ss_pred CeEEEEEEEcCC-CCccceehHHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcCcEEEEecCH------HHHHH
Confidence 367888886432 2233 3788888888889877665443221111 22333455555433 36888
Q ss_pred HHHHHHhccCCccccCCceEEEEecC
Q 015866 76 FWRFLLQKSLSKQWLEGVRYAVFGLG 101 (399)
Q Consensus 76 f~~~L~~~~~~~~~l~~~~~avfGlG 101 (399)
|+....+.. +.+..|+.+.++
T Consensus 210 ll~~A~~~g-----m~~~~yv~i~~d 230 (387)
T cd06386 210 IMLAAHRRG-----LTSGDYIFFNIE 230 (387)
T ss_pred HHHHHHHcC-----CCCCCEEEEEEe
Confidence 888876653 344456665553
No 331
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=22.80 E-value=2e+02 Score=27.38 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=39.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE 53 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~ 53 (399)
-.+..+|.|..+-++++|-.|.....+.|+.+..+++|......+++
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~ 198 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPN 198 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCC
Confidence 35788999999999999999999999999999999998764444433
No 332
>PRK04148 hypothetical protein; Provisional
Probab=22.75 E-value=1.8e+02 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 75 ~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.++|.+. .+ ..+++++.++|+| +. ..+...|.++|...+
T Consensus 3 ~i~~~l~~~-~~--~~~~~kileIG~G-fG--------~~vA~~L~~~G~~Vi 43 (134)
T PRK04148 3 TIAEFIAEN-YE--KGKNKKIVELGIG-FY--------FKVAKKLKESGFDVI 43 (134)
T ss_pred HHHHHHHHh-cc--cccCCEEEEEEec-CC--------HHHHHHHHHCCCEEE
Confidence 455565442 22 2357899999999 32 234456778886554
No 333
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=22.68 E-value=2.1e+02 Score=28.11 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=48.9
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC-------CCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-------PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l-------~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+|.||++...+.+.|+.| ++.|+.++++|+..+.+-|. .+...||++=--+-.|..-. ...+.+.+
T Consensus 206 iia~G~~v~~al~Aa~~L----~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~---~va~~l~e 278 (327)
T CHL00144 206 ILTYSRMRHHVLQAVKVL----VEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGA---ELIAQINE 278 (327)
T ss_pred EEEccHHHHHHHHHHHHH----HhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHH---HHHHHHHH
Confidence 445777777766666665 55799999999988765442 34556666654444455333 34444433
Q ss_pred ccCCccccCCceEEEEecCCC
Q 015866 83 KSLSKQWLEGVRYAVFGLGDS 103 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds 103 (399)
..+. .....+..+|.-|.
T Consensus 279 ~~f~---~~~~pv~rl~~~d~ 296 (327)
T CHL00144 279 HLFD---ELDAPIVRLSSQDV 296 (327)
T ss_pred hchh---hcCCCeEEEccCCC
Confidence 2110 01246677776554
No 334
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.56 E-value=2.7e+02 Score=22.38 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=31.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeec
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT 63 (399)
++-+++.-|.+|+++.+-+.+ +.++++|.+ ++-+.+.....+.+..-+++..++
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~-~~a~~~g~~--vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 46 EDTLVIAISQSGETADTLAAL-RLAKEKGAK--TVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHH-HHHHHcCCe--EEEEECCCCChHHHhCCEEEEecC
Confidence 445677799999999966554 567778854 444433333344433324444443
No 335
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.49 E-value=4.7e+02 Score=27.44 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCcE-EEeCCCCCcCC---CCCCCeEEEEeecCC
Q 015866 24 AERIGRESERRGCPVV-VRPVDDYDARC---LPEEDTVIFVVSTTG 65 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~-v~~l~~~~~~~---l~~~~~ii~~~sT~g 65 (399)
.+.|.+.|+..|+++. ++..+ ..+++ +.+..+-|++++..|
T Consensus 182 l~eikrLL~~~Gi~vn~v~~~g-~sl~di~~~~~A~~NIvl~~~~g 226 (513)
T CHL00076 182 CRELKRLLQDLGIEINQIIPEG-GSVEDLKNLPKAWFNIVPYREVG 226 (513)
T ss_pred HHHHHHHHHHCCCeEEEEECCC-CCHHHHHhcccCcEEEEechhhh
Confidence 3557778888899987 44443 34443 456666666665443
No 336
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.46 E-value=8.6e+02 Score=25.10 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCCeeec
Q 015866 111 VAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 111 ~~k~l~~~L~~lGa~~~~ 128 (399)
.+|.+.+.|...|+.+++
T Consensus 224 sak~vA~lL~~~G~d~Vi 241 (439)
T PTZ00145 224 SAADVARMIEAMGVDRVV 241 (439)
T ss_pred hHHHHHHHHHHcCCCeEE
Confidence 678999999999998875
No 337
>PLN02852 ferredoxin-NADP+ reductase
Probab=22.45 E-value=4.2e+02 Score=27.68 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhcCCC----cEEEeCCCCCcCCC-CCCCeEEEEeecCCCCCC--c-------hhHHHHHHHHHhcc
Q 015866 19 NALDAAERIGRESERRGCP----VVVRPVDDYDARCL-PEEDTVIFVVSTTGQGDT--P-------DSMKVFWRFLLQKS 84 (399)
Q Consensus 19 ~te~~A~~l~~~l~~~g~~----~~v~~l~~~~~~~l-~~~~~ii~~~sT~g~G~~--p-------~~~~~f~~~L~~~~ 84 (399)
..+.+...+.+.+...|+. +.+- .+++.++| ..|+.||+.+.+.....+ | -++..|+.|+....
T Consensus 77 ~~k~v~~~~~~~~~~~~v~~~~nv~vg--~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~ 154 (491)
T PLN02852 77 ETKNVTNQFSRVATDDRVSFFGNVTLG--RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHP 154 (491)
T ss_pred hhHHHHHHHHHHHHHCCeEEEcCEEEC--ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcch
Confidence 3445555565555555543 2221 23334444 358999998887632111 1 14778988875320
Q ss_pred ----CCccccCCceEEEEecCCCC
Q 015866 85 ----LSKQWLEGVRYAVFGLGDSG 104 (399)
Q Consensus 85 ----~~~~~l~~~~~avfGlGds~ 104 (399)
.......+++++|+|.|+..
T Consensus 155 d~~~~~~~~~~gk~VvVIGgGnvA 178 (491)
T PLN02852 155 DCVHLPPDLKSSDTAVVLGQGNVA 178 (491)
T ss_pred hhhhhhhcccCCCEEEEECCCHHH
Confidence 11112358999999999543
No 338
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.43 E-value=7.1e+02 Score=24.03 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=73.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
.+++.|+....-.-+..+++...+.+++.|+.++++.+.+- +.++ | .+.+.|++-.|--
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~ 111 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLE 111 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 46788999999999999999999999999999998888642 1111 1 1223444444321
Q ss_pred ---------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh-
Q 015866 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD- 121 (399)
Q Consensus 65 ---------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~- 121 (399)
| .+-.|-++...++.|+.... .+.|+++.|+|=+ +-.++=+..+|.+
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i---~l~Gk~vvViGrS-------~~VGkPla~lL~~~ 181 (284)
T PRK14193 112 RIDPAKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYDV---ELAGAHVVVIGRG-------VTVGRPIGLLLTRR 181 (284)
T ss_pred cCCcccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHhhc
Confidence 1 11235566666777665433 5889999998853 3356777777776
Q ss_pred -CCCee
Q 015866 122 -LGATA 126 (399)
Q Consensus 122 -lGa~~ 126 (399)
.||+.
T Consensus 182 ~~~atV 187 (284)
T PRK14193 182 SENATV 187 (284)
T ss_pred cCCCEE
Confidence 57765
No 339
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.42 E-value=7.5e+02 Score=24.34 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=54.1
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-----cCCCCCCCeEEEEeecCCCCCCchhHHHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-----ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-----~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~ 79 (399)
..+++.|+.+|.+ +.+|++|++.|.-.-.++++....+-. .+++.+.+ ++++.|+.. ...++..+.+-.
T Consensus 6 ~~~~~~i~~~~~~---~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~d-V~ivqs~~~--p~nd~l~eLll~ 79 (332)
T PRK00553 6 DKSNHVIFSLSKA---KKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKD-VVIFQSTCS--PVNDSLMELLIA 79 (332)
T ss_pred CCCCeEEEECCCC---HHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCE-EEEEcCCCC--CCchHHHHHHHH
Confidence 3566777777654 788999988774211123333332211 12233334 555556542 112232222222
Q ss_pred HHhccCCccccCCce-EEEEe-cC----CCCchhH-HHHHHHHHHHHHhCCCeeec
Q 015866 80 LLQKSLSKQWLEGVR-YAVFG-LG----DSGYQKF-NFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 80 L~~~~~~~~~l~~~~-~avfG-lG----ds~y~~f-~~~~k~l~~~L~~lGa~~~~ 128 (399)
+...+ ...-++ .+|+- +| |+....- .-.+|.+.+.|..+|+.+++
T Consensus 80 ~~alr----~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vi 131 (332)
T PRK00553 80 IDALK----RGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVT 131 (332)
T ss_pred HHHHH----HcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhcCCCEEE
Confidence 21111 012233 34444 33 1111100 22678899999999998875
No 340
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.42 E-value=7.4e+02 Score=24.26 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc--------CCCCCCCeEEEEeecCCCCCCc-hhHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA--------RCLPEEDTVIFVVSTTGQGDTP-DSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~--------~~l~~~~~ii~~~sT~g~G~~p-~~~~~f 76 (399)
++++.|+.++.+ ..+|++|++.| |.+..-..+..|.- +++...+ ++++.+++ .|+ ++..+.
T Consensus 7 ~~~~~i~~~~~~---~~la~~ia~~l---g~~l~~~~~~~FpdGE~~v~i~~~v~g~d-V~ii~s~~---~~~nd~l~eL 76 (323)
T PRK02458 7 DKQIKLFSLNSN---LEIAEKIAQAA---GVPLGKLSSRQFSDGEIMINIEESVRGDD-IYIIQSTS---FPVNDHLWEL 76 (323)
T ss_pred CCCeEEEECCCC---HHHHHHHHHHh---CCceeeeEEEECCCCCEEEEecCCcCCCe-EEEEecCC---CCCchHHHHH
Confidence 456777777654 78888888877 33333333333321 1233333 55555553 222 232222
Q ss_pred HHHHHhccCCccccCCceEEEEe-cC----CCCchhH-HHHHHHHHHHHHhCCCeeec
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFG-LG----DSGYQKF-NFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfG-lG----ds~y~~f-~~~~k~l~~~L~~lGa~~~~ 128 (399)
+-.+...+. .-..+-.+|+- +| |+.+..- .-.+|.+.+.|..+|+.++.
T Consensus 77 ll~~~alr~---~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vi 131 (323)
T PRK02458 77 LIMIDACKR---ASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVL 131 (323)
T ss_pred HHHHHHHHH---cCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCeEE
Confidence 222211110 01122334444 33 1111100 12688899999999998875
No 341
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=22.36 E-value=3.3e+02 Score=23.82 Aligned_cols=51 Identities=31% Similarity=0.340 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
+-.|..+...++.|+.... .++|+++.|+|-+. -.++-+..+|.+.||+..
T Consensus 14 ~~~PcTp~aii~lL~~~~~---~l~Gk~v~VvGrs~-------~VG~Pla~lL~~~~atVt 64 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGI---DLEGKKVVVVGRSN-------IVGKPLAMLLLNKGATVT 64 (160)
T ss_dssp SS--HHHHHHHHHHHHTT----STTT-EEEEE-TTT-------TTHHHHHHHHHHTT-EEE
T ss_pred CCcCCCHHHHHHHHHhcCC---CCCCCEEEEECCcC-------CCChHHHHHHHhCCCeEE
Confidence 4567788899999877544 59999999999653 357888899999998875
No 342
>PLN02306 hydroxypyruvate reductase
Probab=22.32 E-value=1.2e+02 Score=30.61 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=26.5
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHH-hCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL-DLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~-~lGa~~~~ 128 (399)
.+.|++++|+|+| ..|+.+.++|. .+|++.++
T Consensus 162 ~L~gktvGIiG~G--------~IG~~vA~~l~~~fGm~V~~ 194 (386)
T PLN02306 162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIY 194 (386)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHHhcCCCEEEE
Confidence 5889999999976 57888888885 89998763
No 343
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=22.30 E-value=2.8e+02 Score=21.81 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHHhccCCccccCCceEEEEecCCC---CchhHHHHHHHHHHHHHhCCCeeeccceeecCCCC
Q 015866 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS---GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 138 (399)
Q Consensus 68 ~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds---~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~ 138 (399)
...+-..+..+.|++ +|++|-+-.+|=. .|..-..+.+.+.+.+.+.|+.|++-...+|...+
T Consensus 14 s~~~~V~~~i~~i~~--------sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikId~R~d 79 (92)
T PF01910_consen 14 SVSAYVAEAIEVIKE--------SGLKYEVGPMGTTIEGELDEVMALIKEAHEALFEAGAKRVVTVIKIDDRRD 79 (92)
T ss_dssp HHHHHHHHHHHHHHT--------SSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHH--------cCCceEEcCCccEEEecHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEcCC
Confidence 334444555555643 5778877776522 27777889999999999999999999999998754
No 344
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=22.28 E-value=81 Score=28.23 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=30.7
Q ss_pred ceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCC
Q 015866 247 KDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPD 292 (399)
Q Consensus 247 ~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~ 292 (399)
.+++++.|..++ ...|+||.++.|...++.....+.......+.+
T Consensus 8 ~~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~ 52 (223)
T cd00322 8 DDVRLFRLQLPN-GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE 52 (223)
T ss_pred CCeEEEEEecCC-CCCcCCCcEEEEEecCCCCcceeeeeccCCCCC
Confidence 367888888763 678999999999987654444444444444433
No 345
>cd08520 PBP2_NikA_DppA_OppA_like_21 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=22.28 E-value=1.7e+02 Score=29.76 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=28.0
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
++.++|.+.. +.+.+|+.|++.|++.|+++++..++.
T Consensus 331 ~l~l~~~~~~-~~~~~a~~i~~~l~~iGi~v~i~~~~~ 367 (468)
T cd08520 331 SLELLTSSSG-DEVRVAELIKEQLERVGIKVNVKSLES 367 (468)
T ss_pred EEEEEecCCc-hHHHHHHHHHHHHHHcCceEEEEecCh
Confidence 3555555433 568899999999999999998876653
No 346
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=22.06 E-value=2.1e+02 Score=27.38 Aligned_cols=52 Identities=25% Similarity=0.222 Sum_probs=37.8
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
|.=+ +..-|+..|++.... ..++++++.|+|.| ++++.+-..|.++|++.+.
T Consensus 102 G~NT-D~~G~~~~l~~~~~~-~~~~~k~vlvlGaG--------Gaarai~~aL~~~G~~~i~ 153 (282)
T TIGR01809 102 GDNT-DWDGIAGALANIGKF-EPLAGFRGLVIGAG--------GTSRAAVYALASLGVTDIT 153 (282)
T ss_pred EecC-CHHHHHHHHHhhCCc-cccCCceEEEEcCc--------HHHHHHHHHHHHcCCCeEE
Confidence 3334 477899998753210 13678999999986 6788898999999987653
No 347
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=22.06 E-value=3.3e+02 Score=23.16 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
+-.|...+..++.|+.... .++|+++.|+|=+ ...++-+..+|.+.|++..
T Consensus 6 ~~~p~t~~a~~~ll~~~~~---~~~gk~v~VvGrs-------~~vG~pla~lL~~~gatV~ 56 (140)
T cd05212 6 LFVSPVAKAVKELLNKEGV---RLDGKKVLVVGRS-------GIVGAPLQCLLQRDGATVY 56 (140)
T ss_pred cccccHHHHHHHHHHHcCC---CCCCCEEEEECCC-------chHHHHHHHHHHHCCCEEE
Confidence 3456678888888876543 5899999999954 4568888889988887764
No 348
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.05 E-value=2.6e+02 Score=24.36 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=34.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeec
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT 63 (399)
.++=+++.-|.+|+|+.+-+.+ +.++++|.+ ++-+.+.....|.+..-+++.+++
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~-~~ak~~Ga~--vI~IT~~~~s~La~~aD~~l~~~~ 154 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKAL-EAAKERGMK--TIALTGRDGGKLLELADIEIHVPS 154 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHH-HHHHHCCCE--EEEEeCCCCCchhhhCCEEEEeCC
Confidence 3445677889999999888766 456778854 444444433456554445555554
No 349
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.01 E-value=3.2e+02 Score=27.74 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCCcCC---CCCCCeEEEEeecCC----------CCCC---------chhHHHHHHHHHh
Q 015866 25 ERIGRESERRGCPVVVRPVDDYDARC---LPEEDTVIFVVSTTG----------QGDT---------PDSMKVFWRFLLQ 82 (399)
Q Consensus 25 ~~l~~~l~~~g~~~~v~~l~~~~~~~---l~~~~~ii~~~sT~g----------~G~~---------p~~~~~f~~~L~~ 82 (399)
..|.+.|++.|+++..+--...+.++ +.+..+-|++++.+| .|.| ++...+|++.|.+
T Consensus 182 ~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~~T~~~l~~ia~ 261 (426)
T cd01972 182 DEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIEATDKWLREIAK 261 (426)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHHHHHHHHHHHHH
Confidence 44666677789988655443334343 456666666665442 1211 2344556655533
Q ss_pred c-cC---------------------CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCC-Ceeec
Q 015866 83 K-SL---------------------SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG-ATAVV 128 (399)
Q Consensus 83 ~-~~---------------------~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lG-a~~~~ 128 (399)
. .. -...|.|++++|+|-++..+ .+-+.|.++| ...+.
T Consensus 262 ~~g~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~~~--------~~~~~l~elG~~~v~~ 322 (426)
T cd01972 262 VLGMEAEAEAVIEREHERVAPEIEELRKALKGKKAIVETGAAYGH--------LLIAVLRELGFGEVPV 322 (426)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCccHH--------HHHHHHHHcCCceEEE
Confidence 2 10 01357899999998665443 3445677899 88775
No 350
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=22.00 E-value=1.5e+02 Score=27.55 Aligned_cols=38 Identities=8% Similarity=0.223 Sum_probs=29.5
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 276 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~ 276 (399)
+|++.+.+++ +++.+.|+.+ ....|+||.++.|..++.
T Consensus 8 ~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 8 KIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred EEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 6888888875 5788888854 567899999999986554
No 351
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.92 E-value=93 Score=25.18 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=34.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~ 64 (399)
.++-+++.-|.+|+++.+.+.+. .++++|.++ +-+.+.....+....-++|.+++-
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~-~ak~~g~~v--i~iT~~~~~~l~~~ad~~l~~~~~ 107 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLR-FAKERGAPV--ILITSNSESPLARLADIVLYIPTG 107 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHH-HHHHTTSEE--EEEESSTTSHHHHHSSEEEEEESS
T ss_pred cccceeEeeeccccchhhhhhhH-HHHhcCCeE--EEEeCCCCCchhhhCCEEEEecCC
Confidence 34455666679999999999998 788888655 333333223333322345555543
No 352
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=21.88 E-value=1.2e+02 Score=32.05 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.2
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.|.|++++|+|+| ..|+.+.++|+.+|++.++
T Consensus 135 ~l~gktvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 166 (525)
T TIGR01327 135 ELYGKTLGVIGLG--------RIGSIVAKRAKAFGMKVLA 166 (525)
T ss_pred ccCCCEEEEECCC--------HHHHHHHHHHHhCCCEEEE
Confidence 5889999999976 5789999999999987653
No 353
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=21.85 E-value=6.2e+02 Score=23.15 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhcCC--CcEEEeCCCCCc--------------------------------
Q 015866 6 RNKLLILYASQTG---NALDAAERIGRESERRGC--PVVVRPVDDYDA-------------------------------- 48 (399)
Q Consensus 6 ~~~v~IlY~S~tG---~te~~A~~l~~~l~~~g~--~~~v~~l~~~~~-------------------------------- 48 (399)
|++|+++=+|..| .+.++++.+.+..++..- ++...|+.+-.+
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 5678888888774 356777777777776543 344444432110
Q ss_pred --CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc--------CCccccCCceEEEEecCCCCchh----HHHHHHH
Q 015866 49 --RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSGYQK----FNFVAKK 114 (399)
Q Consensus 49 --~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~--------~~~~~l~~~~~avfGlGds~y~~----f~~~~k~ 114 (399)
++|...|.+||+.|=| +-..|...+.+++.+.... -|...+.|+++.++..=---|.+ +.-....
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 0134678999999999 6678888999999986542 24556888999888741112332 5667788
Q ss_pred HHHHHHhCCCeee
Q 015866 115 LDNRLLDLGATAV 127 (399)
Q Consensus 115 l~~~L~~lGa~~~ 127 (399)
|...|.=+|.+-+
T Consensus 160 Lr~ilgF~Gitd~ 172 (202)
T COG1182 160 LRTILGFLGITDV 172 (202)
T ss_pred HHHHhhhcCCCcc
Confidence 8888888998754
No 354
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.76 E-value=2.4e+02 Score=28.49 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=40.3
Q ss_pred CCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCch---------hHHHHHHHHHHHHHhCCCeeec
Q 015866 64 TGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ---------KFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 64 ~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~---------~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+|.|.+|+ -...+.++.+.-.+...++|+++.|-|-+.+.|- .-+..|..+.+.|...||++.+
T Consensus 158 ~g~g~~~~-~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~ 230 (390)
T TIGR00521 158 EGKGRLAE-PETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTL 230 (390)
T ss_pred ccCCCCCC-HHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEE
Confidence 45666654 3344444432211113589999999987654331 1245889999999999999764
No 355
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.75 E-value=6e+02 Score=22.93 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCc
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPV 38 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~ 38 (399)
.+++.|+|.... ..+..++.+.+.+++.|+++
T Consensus 135 ~~~i~~v~~~~~-~~~~~~~~~~~~~~~~g~~i 166 (298)
T cd06268 135 VKKVAIIYDDYA-YGRGLAAAFREALKKLGGEV 166 (298)
T ss_pred CCEEEEEEcCCc-hhHHHHHHHHHHHHHcCCEE
Confidence 457778876544 56677888888888777654
No 356
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=21.75 E-value=1.5e+02 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=28.8
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 276 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~ 276 (399)
+|++.+.+++ +++++.|..+. ...|+||.++.|...+.
T Consensus 2 ~v~~~~~~t~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~~ 39 (224)
T cd06189 2 KVESIEPLND-----DVYRVRLKPPA-PLDFLAGQYLDLLLDDG 39 (224)
T ss_pred EEEEEEeCCC-----ceEEEEEecCC-CcccCCCCEEEEEcCCC
Confidence 4566666654 58889888773 68899999999997653
No 357
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=21.68 E-value=4.7e+02 Score=25.37 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=41.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCC--cE---EEeCCCC-CcCC----C--CCCCeEEEEeecCCCCCCchhH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCP--VV---VRPVDDY-DARC----L--PEEDTVIFVVSTTGQGDTPDSM 73 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~--~~---v~~l~~~-~~~~----l--~~~~~ii~~~sT~g~G~~p~~~ 73 (399)
-+++.|+|.+..+. +.+++.+.+.+++.|+. +. .++.... +... + .+.+.||+.++. +.+
T Consensus 136 w~~vaii~~~~~~g-~~~~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-------~~~ 207 (362)
T cd06367 136 WHQFSVVTSRDPGY-RDFLDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKKLESRVILLYCSK-------EEA 207 (362)
T ss_pred CeEEEEEEEcCccc-HHHHHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHHhcCCcEEEEeCCH-------HHH
Confidence 36788999866543 57888999999988876 32 2222221 1111 1 234445444443 357
Q ss_pred HHHHHHHHhcc
Q 015866 74 KVFWRFLLQKS 84 (399)
Q Consensus 74 ~~f~~~L~~~~ 84 (399)
..+++.+.+..
T Consensus 208 ~~il~~a~~~g 218 (362)
T cd06367 208 ERIFEAAASLG 218 (362)
T ss_pred HHHHHHHHHcC
Confidence 78888876653
No 358
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.67 E-value=7.4e+02 Score=23.94 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=77.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC-------C---CCCCeEEEEeecC----------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC-------L---PEEDTVIFVVSTT---------- 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~-------l---~~~~~ii~~~sT~---------- 64 (399)
..++.|+....---+..+++...+.+++.|+.++++.+.+- +.++ | ++.+.|++-.|--
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~ 110 (286)
T PRK14184 31 APGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLE 110 (286)
T ss_pred CCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHh
Confidence 45688888888889999999999999999999999887642 1111 1 2234555555522
Q ss_pred ---------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh-
Q 015866 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD- 121 (399)
Q Consensus 65 ---------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~- 121 (399)
| .+-.|-+....++.|+.... .+.|+++.|+|=+ +-.++=+..+|.+
T Consensus 111 ~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i---~l~Gk~vvViGrS-------~iVG~Pla~lL~~~ 180 (286)
T PRK14184 111 LIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYGL---SPAGKKAVVVGRS-------NIVGKPLALMLGAP 180 (286)
T ss_pred ccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHHhCC
Confidence 1 11235566677777766543 5899999999954 3467888888888
Q ss_pred ---CCCeee
Q 015866 122 ---LGATAV 127 (399)
Q Consensus 122 ---lGa~~~ 127 (399)
.||+..
T Consensus 181 ~~~~~AtVt 189 (286)
T PRK14184 181 GKFANATVT 189 (286)
T ss_pred cccCCCEEE
Confidence 677653
No 359
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=2.9e+02 Score=27.38 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEE
Q 015866 18 GNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAV 97 (399)
Q Consensus 18 G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~av 97 (399)
-+-+.+|..+-+.|+..- .. . .++ +...+.++|-+||.-..+..+......+++... ..+++-
T Consensus 96 ~~~~qia~Dl~~llk~f~------~~---h-~e~-~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i------~~nf~~ 158 (414)
T KOG1283|consen 96 TNNKQIALDLVELLKGFF------TN---H-PEF-KTVPLYIFCESYGGKMAAKFALELDDAIKRGEI------KLNFIG 158 (414)
T ss_pred ccHHHHHHHHHHHHHHHH------hc---C-ccc-cccceEEEEhhcccchhhhhhhhHHHHHhcCce------eeccee
Confidence 455778888887776421 10 0 122 233566778889877788888888888865432 346777
Q ss_pred EecCCC
Q 015866 98 FGLGDS 103 (399)
Q Consensus 98 fGlGds 103 (399)
..||||
T Consensus 159 VaLGDS 164 (414)
T KOG1283|consen 159 VALGDS 164 (414)
T ss_pred EEccCc
Confidence 789998
No 360
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=21.55 E-value=6.5e+02 Score=24.54 Aligned_cols=117 Identities=19% Similarity=0.184 Sum_probs=64.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC--------CCCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC--------LPEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~--------l~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
++++.|++|.. ...+|++|++.+ |++..-+.+..++-.+ ..+.+ +.++-|.. |..-++..+.+
T Consensus 1 ~~~i~lf~g~s---hp~La~~I~~~l---gi~l~~v~~kkf~nge~~v~i~esvR~~d-V~iiqsgs--g~ind~lmELL 71 (316)
T KOG1448|consen 1 MKNIKLFSGDS---HPELAERIAARL---GIELGKVNLKKFSNGETSVQIGESVRGED-VYIIQSGS--GPINDNLMELL 71 (316)
T ss_pred CCceEEEcCCC---CHHHHHHHHHHh---CCCcceeeeEEccCCcEEEecccccccCc-EEEeccCC--CcchHHHHHHH
Confidence 46788888764 578999998876 4444434444443221 22333 55555555 34445544444
Q ss_pred HHHHhccCCccccCCceEEE---EecCCCC---chhHHHHHHHHHHHHHhCCCeeeccceeec
Q 015866 78 RFLLQKSLSKQWLEGVRYAV---FGLGDSG---YQKFNFVAKKLDNRLLDLGATAVVERGLGD 134 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~av---fGlGds~---y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D 134 (399)
--+..+.. ....+--+| |+.+-+. -.|---.+|.+.+.|...|+..+.-+..-.
T Consensus 72 I~I~ac~~---asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa 131 (316)
T KOG1448|consen 72 IMINACKR---ASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHA 131 (316)
T ss_pred HHHHhcch---hhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccc
Confidence 33333321 122333333 4433211 115567899999999999998886554433
No 361
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=21.44 E-value=2.5e+02 Score=29.57 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=42.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC--CCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHH
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD--DYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~--~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L 80 (399)
++.+.|.+.....+.+|+.|.+.|++.|+++++..++ ++. ....+.+ +++++..++ ++ ... .++.++
T Consensus 404 ~l~l~~~~~~~~~~~~A~~iq~~l~~~GI~v~i~~~~~~~~~-~~~~~~D-~~l~~~~~~--~~-~~~-s~~~~~ 472 (552)
T PRK13626 404 SLTLTFYQDHSEHRVIAGIMQQLLASHGVTLEIQEIDYDQWH-QGEAESD-IWLNSANFT--LP-LEF-SLFAHL 472 (552)
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHhCcEEEEEEeeHHHHh-cCCCCCC-EEEeccccC--Cc-hhH-HHHHHH
Confidence 4666665556778899999999999999998875443 322 1123345 444555563 32 233 677665
No 362
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.44 E-value=7.7e+02 Score=24.08 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCCeeec
Q 015866 111 VAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 111 ~~k~l~~~L~~lGa~~~~ 128 (399)
.+|.+.+.|...|+.++.
T Consensus 110 sak~~a~ll~~~g~d~vi 127 (320)
T PRK02269 110 TSKLVANMLEVAGVDRLL 127 (320)
T ss_pred hHHHHHHHHhhcCCCEEE
Confidence 588999999999998875
No 363
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=21.35 E-value=1.9e+02 Score=26.39 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCcE--EE--eCCCCC--cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEE
Q 015866 24 AERIGRESERRGCPVV--VR--PVDDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAV 97 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~--v~--~l~~~~--~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~av 97 (399)
.+.++..+++.|+.|- +. +-++++ .+-+++. -++..||.|...-..+-+-|.+-|..... .++.+.+.|
T Consensus 99 ~r~~g~~~q~~Gi~VIP~v~W~~~~s~~~~~~gi~~~--~ivaist~g~~~~~~~~~~f~~Gl~em~~---rl~P~~ilv 173 (200)
T PF14386_consen 99 SRWLGAYWQSNGIKVIPNVSWSDKRSFDFCFDGIPKG--SIVAISTNGCINNKEDKKLFLDGLREMLK---RLRPKHILV 173 (200)
T ss_pred HHHHHHHHHHCCCeEcceEEecCcchHHHHHhhcccC--CEEEEEEecccCCHHHHHHHHHHHHHHHh---ccCCCeEEE
Confidence 4678888999998752 22 223322 1123443 45577888755555566667776655421 357788888
Q ss_pred Ee
Q 015866 98 FG 99 (399)
Q Consensus 98 fG 99 (399)
.|
T Consensus 174 yG 175 (200)
T PF14386_consen 174 YG 175 (200)
T ss_pred EC
Confidence 88
No 364
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.26 E-value=2.5e+02 Score=28.33 Aligned_cols=66 Identities=29% Similarity=0.189 Sum_probs=48.6
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+.......+.+-+|+++-+|+.|.+++.++|.++.++-.. .|.+-|.+|....+|-.-.|+.-+..
T Consensus 156 ~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg------------~I~gds~tG~~n~~D~~~Rlv~~~~~ 221 (382)
T COG3320 156 PTRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPG------------YITGDSRTGALNTRDFLTRLVLGLLQ 221 (382)
T ss_pred ccccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecC------------eeeccCccCccccchHHHHHHHHHHH
Confidence 4455667788999999999999999999999999987654 45555566777666644445544433
No 365
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=21.24 E-value=2.1e+02 Score=32.41 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=24.3
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..|.|++++|+|-|+..|. +.+.|.++|++.+.
T Consensus 316 ~~L~GKrv~i~~g~~~~~~--------la~~l~elGmevv~ 348 (917)
T PRK14477 316 ARLEGKRVVLFTGGVKTWS--------MVNALRELGVEVLA 348 (917)
T ss_pred HHccCCEEEEECCCchHHH--------HHHHHHHCCCEEEE
Confidence 3588999999997765543 45567788888764
No 366
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.17 E-value=1.6e+02 Score=28.68 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=33.1
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEe
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRP 42 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~ 42 (399)
++.++|.|++-...-.+.+++++|.+.|.++|+++.+.+
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~ 41 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLD 41 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEee
Confidence 355779999999888999999999999999998876644
No 367
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=21.14 E-value=2.5e+02 Score=27.09 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=30.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVR 41 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~ 41 (399)
.++|.|++-...-.+.+++++|.+.|+++|+++.+.
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~ 40 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFE 40 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 567999988888889999999999999999876553
No 368
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.95 E-value=1.7e+02 Score=28.46 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=32.9
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVR 41 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~ 41 (399)
++++|.|++-...-.+..++++|.+.|.++|+.+.+.
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~ 40 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLD 40 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4678999999999999999999999999999887664
No 369
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=20.89 E-value=5.5e+02 Score=24.71 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=50.1
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC---CCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVD---DYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~---~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
-.++||+ |++..+|+.++..+...|..+....-. ......+.+.+ ++|+.|..| ..+ +....++.++..
T Consensus 49 ~I~i~G~--G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d-~~I~iS~sG--~t~-~~~~~~~~ak~~-- 120 (326)
T PRK10892 49 KVVVMGM--GKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQD-VVIAISNSG--ESS-EILALIPVLKRL-- 120 (326)
T ss_pred eEEEEeC--cHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCC-EEEEEeCCC--CCH-HHHHHHHHHHHC--
Confidence 3566664 689999999999999999887664311 11223344555 555555543 333 466666665543
Q ss_pred CccccCCceEEEEecCCCCc
Q 015866 86 SKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y 105 (399)
.-+.+++-+.+++..
T Consensus 121 -----g~~vi~iT~~~~s~l 135 (326)
T PRK10892 121 -----HVPLICITGRPESSM 135 (326)
T ss_pred -----CCcEEEEECCCCCcc
Confidence 234566666666543
No 370
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.79 E-value=1.4e+02 Score=22.04 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHHHHHhc-CCCcEEEeCCCCC----cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 17 TGNALDAAERIGRESERR-GCPVVVRPVDDYD----ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 17 tG~te~~A~~l~~~l~~~-g~~~~v~~l~~~~----~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.|++..+|+.++..+.+. |.++....-.... ...+.+.+++|++ |.. |..+ ......+.+++
T Consensus 6 ~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i-S~s--g~t~-~~~~~~~~a~~ 72 (87)
T cd04795 6 IGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIAL-SYS--GRTE-ELLAALEIAKE 72 (87)
T ss_pred cCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEE-ECC--CCCH-HHHHHHHHHHH
Confidence 478999999999999887 8877665433322 1233445544444 444 3334 46667777654
No 371
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.65 E-value=87 Score=32.47 Aligned_cols=61 Identities=21% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHhcccCCCCCcHHHHHHHHHhcC-----C----HHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCCccc
Q 015866 325 ELTMDVTSASPRRYFFEVMSYFAT-----A----EHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAFHLI 395 (399)
Q Consensus 325 ~~~lDl~~~~p~~~~l~~La~~a~-----d----~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~~~~ 395 (399)
++|.|+++ .-+-.+|+.++.|-- | +..|..|+++.| .+..|+- .-|+|+|-. .+..+||+-
T Consensus 501 qq~wD~sS-teRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lS-----F~~RYiP---v~l~e~lpq-riN~RPp~y 570 (614)
T KOG2333|consen 501 QQHWDISS-TERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLS-----FFHRYIP---VGLLEVLPQ-RINDRPPLY 570 (614)
T ss_pred hhcCCccc-hHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHH-----HHHhhch---HHHhhcCch-hhccCCccc
Confidence 46899998 767777777776632 3 456888888876 5778884 788999888 788888863
No 372
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.51 E-value=3e+02 Score=28.01 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=43.4
Q ss_pred eecCCCCCCchhHHHHHHHHHhccC------------------------CccccCCceEEEEecCCCCch----hH-HHH
Q 015866 61 VSTTGQGDTPDSMKVFWRFLLQKSL------------------------SKQWLEGVRYAVFGLGDSGYQ----KF-NFV 111 (399)
Q Consensus 61 ~sT~g~G~~p~~~~~f~~~L~~~~~------------------------~~~~l~~~~~avfGlGds~y~----~f-~~~ 111 (399)
..-||..-+|...+.+....++... ....++|+++||+|+- +. .+ ...
T Consensus 255 G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~l~Gk~iavlgLa---fKpnTDD~ReSp 331 (414)
T COG1004 255 GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNHLGLKGKTIAVLGLA---FKPNTDDMRESP 331 (414)
T ss_pred CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEe---ecCCCccchhch
Confidence 3345556689998888877654421 1123889999999984 32 12 345
Q ss_pred HHHHHHHHHhCCCeee
Q 015866 112 AKKLDNRLLDLGATAV 127 (399)
Q Consensus 112 ~k~l~~~L~~lGa~~~ 127 (399)
+..+-++|.+.||+..
T Consensus 332 a~~vi~~L~~~Ga~V~ 347 (414)
T COG1004 332 ALDIIKRLQEKGAEVI 347 (414)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 6778889999999874
No 373
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=20.42 E-value=90 Score=28.27 Aligned_cols=43 Identities=7% Similarity=0.164 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhc
Q 015866 316 VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA 360 (399)
Q Consensus 316 ~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~ 360 (399)
-.-.|.++|..||+-++ ....|-..|..|+++..+|+-+..|.
T Consensus 156 LDe~Lq~~~~~yLeeRG--Id~~la~fl~~y~~~kEq~eYi~wL~ 198 (204)
T PF02330_consen 156 LDENLQDAFMNYLEERG--IDEELANFLHDYSTDKEQREYIRWLK 198 (204)
T ss_dssp SBHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999998 79999999999999888888777764
No 374
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.42 E-value=4.2e+02 Score=21.86 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=27.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPV 43 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l 43 (399)
.++..++.-|..|.|.....++.+.+++.|..+-++.-
T Consensus 60 ~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~ 97 (153)
T cd05009 60 DEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITD 97 (153)
T ss_pred cCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEec
Confidence 34556777788888888788888888888866554443
No 375
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=20.33 E-value=3.1e+02 Score=27.38 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=30.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.++|+++++.|.||-.|+..+.+++.+-..+..+|++..
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~ 205 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 205 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 378999999999887676556777878888888998754
No 376
>PRK05629 hypothetical protein; Validated
Probab=20.29 E-value=7.8e+02 Score=23.68 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=74.1
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHhcC---CCcEEEeCCCCCcCC--------CCCCCeEEEEeecCCCCCCchh
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESERRG---CPVVVRPVDDYDARC--------LPEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g---~~~~v~~l~~~~~~~--------l~~~~~ii~~~sT~g~G~~p~~ 72 (399)
+.=+.++++||.+.+-.++..+.|...+...+ ++...++.++++..+ +....-+|++--..+.|. ..
T Consensus 3 ~~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~~~~l~~~~t~slF~~~rlV~v~~~~~~~~--~~ 80 (318)
T PRK05629 3 SVQPPVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVSQGELLDALSPSLFGEDRVIVLTNMEQAGK--EP 80 (318)
T ss_pred CcCCceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCCHHHHHHhhCcCccCCceEEEEeChHhcCh--hH
Confidence 34467999999999999888888888775443 456667766665332 344455666655443332 34
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHH
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l 152 (399)
...+.+++.... ....+.+++-|. ...+++-+.|++.|...-+. . . ....+..|..+.
T Consensus 81 ~~~l~~~l~~~~------~~~~Lil~~~~~-------~~~kk~~K~l~k~~~~ve~~-----~--~--~~~~l~~wi~~~ 138 (318)
T PRK05629 81 TDLALSAAVDPS------PGIYLIIMHSGG-------GRTKSMVPKLEKIAVVHEAA-----K--L--KPRERPGWVTQE 138 (318)
T ss_pred HHHHHHHHhCCC------CCeEEEEEcCCc-------chhhHHHHHHHhcceEeeCC-----C--C--CHHHHHHHHHHH
Confidence 566777775421 222333333231 11255556677766333111 1 1 356788898776
Q ss_pred HHHH
Q 015866 153 WRRL 156 (399)
Q Consensus 153 ~~~l 156 (399)
.+..
T Consensus 139 ~~~~ 142 (318)
T PRK05629 139 FKNH 142 (318)
T ss_pred HHHc
Confidence 6544
No 377
>cd08489 PBP2_NikA The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel transport system, which functions in the import of nickel and in the control of chemotactic response away from nickel. The ATP-binding cassette (ABC) type nickel transport system is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, the initial nickel receptor. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides,
Probab=20.25 E-value=2.2e+02 Score=29.16 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=29.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
++.++|.+..-..+.+|+.|++.+++.|+++++..++.
T Consensus 335 ~~~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~ 372 (488)
T cd08489 335 SLELVYQTDNALQKSIAEYLQSELKKIGIDLNIIGEEE 372 (488)
T ss_pred EEEEEecCCCchHHHHHHHHHHHHHHcCcEEEEeeccH
Confidence 35556655555578999999999999999998776654
No 378
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=20.18 E-value=3.6e+02 Score=26.25 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.4
Q ss_pred CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC
Q 015866 17 TGNALDAAERIGRESERRGCPVVVRPVDDYDAR 49 (399)
Q Consensus 17 tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~ 49 (399)
+|..+.+++.|.+++...|++|..+.+..++..
T Consensus 172 ~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~i~ 204 (299)
T PF08643_consen 172 SSALSSFFTSLRRELRPHNIDVTQIKLGNLDIG 204 (299)
T ss_pred HHHHHHHHHHHHHHhhhcCCceEEEEeeeeccc
Confidence 567888999999999989999988887776655
No 379
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=20.13 E-value=2.4e+02 Score=27.02 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+..-|...|+... ..++++++.|+|.| +++|.+--.|.++|+++++
T Consensus 110 D~~Gf~~~L~~~~---~~~~~k~vlilGaG--------GaarAi~~aL~~~g~~~i~ 155 (283)
T PRK14027 110 DVSGFGRGMEEGL---PNAKLDSVVQVGAG--------GVGNAVAYALVTHGVQKLQ 155 (283)
T ss_pred CHHHHHHHHHhcC---cCcCCCeEEEECCc--------HHHHHHHHHHHHCCCCEEE
Confidence 3777998886421 13678999999986 6788898899999987753
No 380
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=20.09 E-value=1.8e+02 Score=31.47 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCC-cEEEeC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCP-VVVRPV 43 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~-~~v~~l 43 (399)
.++++|+.+|-.|++..++..|.+.+++.+.+ +++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHcCCCeeEEEEe
Confidence 46799999999999999999999999988776 666654
No 381
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=20.04 E-value=8.2e+02 Score=23.86 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcC--------CCC-C---CCeEEEEeecCCC-CCCchhHHHHHHHHHhccCC
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR--------CLP-E---EDTVIFVVSTTGQ-GDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~--------~l~-~---~~~ii~~~sT~g~-G~~p~~~~~f~~~L~~~~~~ 86 (399)
-..+|+.|.+.+.+.|+++... .+...+ -+. + ..+|-+...+... ...+....+|-+.|.+.- .
T Consensus 87 d~eLA~~i~~~~~~~g~d~a~~--~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG~aI~~ai-~ 163 (313)
T PRK13370 87 PSDLAEALAEAVLDSGIDVAVS--YRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLGEAVGRFL-A 163 (313)
T ss_pred CHHHHHHHHHHhHhcCCChhhc--CCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHHHHHHHHH-H
Confidence 4779999999998888875322 221111 111 2 2233333333322 233345555655554421 1
Q ss_pred ccccCCceEEEEecCCCCc
Q 015866 87 KQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~y 105 (399)
.+ +++++|+|+||-+.
T Consensus 164 --~~-d~rVlvIaSGdLSH 179 (313)
T PRK13370 164 --TL-DKRVLFLGSGGLSH 179 (313)
T ss_pred --hc-CCCEEEEEeCCCcC
Confidence 13 67899999998654
Done!