Query 015866
Match_columns 399
No_of_seqs 217 out of 2176
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 4E-64 1.4E-68 528.9 34.8 358 5-394 17-382 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 6.1E-62 2.1E-66 517.4 34.1 363 5-395 48-418 (682)
3 1tll_A Nitric-oxide synthase, 100.0 9.4E-61 3.2E-65 508.4 34.2 355 5-394 10-419 (688)
4 3hr4_A Nitric oxide synthase, 100.0 2.9E-36 9.9E-41 276.4 15.1 152 4-161 38-189 (219)
5 3qfs_A CPR, P450R, NADPH--cyto 100.0 1.4E-31 4.7E-36 271.2 18.6 160 227-395 59-223 (458)
6 2qtl_A MSR;, methionine syntha 100.0 4.1E-30 1.4E-34 265.7 19.6 161 228-394 112-279 (539)
7 1bvy_F Protein (cytochrome P45 100.0 3.5E-30 1.2E-34 232.5 15.2 147 5-157 20-167 (191)
8 1ykg_A SIR-FP, sulfite reducta 100.0 5.2E-30 1.8E-34 226.6 13.1 153 3-161 6-158 (167)
9 4dql_A Bifunctional P-450/NADP 100.0 4.8E-29 1.6E-33 248.9 14.3 149 233-394 10-159 (393)
10 2hna_A Protein MIOC, flavodoxi 100.0 1E-29 3.6E-34 219.7 7.5 146 6-156 1-146 (147)
11 1f20_A Nitric-oxide synthase; 100.0 5.9E-28 2E-32 244.2 15.9 160 230-394 30-198 (435)
12 3f6r_A Flavodoxin; FMN binding 99.9 5.9E-28 2E-32 208.6 11.4 144 6-155 1-147 (148)
13 1ddg_A Sulfite reductase (NADP 99.9 3.3E-25 1.1E-29 219.9 14.7 135 228-388 9-144 (374)
14 1f4p_A Flavodoxin; electron tr 99.9 1.6E-25 5.4E-30 193.0 10.8 142 7-154 1-145 (147)
15 2wc1_A Flavodoxin; electron tr 99.9 1.3E-24 4.5E-29 194.3 5.7 149 6-160 1-180 (182)
16 1yob_A Flavodoxin 2, flavodoxi 99.9 7.3E-24 2.5E-28 189.1 7.6 145 7-157 1-176 (179)
17 2bmv_A Flavodoxin; electron tr 99.9 5.3E-24 1.8E-28 187.1 4.9 139 6-155 1-162 (164)
18 2fcr_A Flavodoxin; electron tr 99.9 9.1E-23 3.1E-27 180.9 11.8 142 8-156 1-171 (173)
19 1obo_A Flavodoxin; electron tr 99.9 1.5E-22 5E-27 178.5 11.7 143 7-156 2-167 (169)
20 1czn_A Flavodoxin; FMN binding 99.9 9.6E-23 3.3E-27 179.7 9.2 144 7-156 1-167 (169)
21 1ag9_A Flavodoxin; electron tr 99.9 9.4E-23 3.2E-27 181.2 7.6 144 7-157 1-168 (175)
22 5nul_A Flavodoxin; electron tr 99.9 7.5E-22 2.6E-26 168.1 12.3 134 9-152 1-135 (138)
23 3hly_A Flavodoxin-like domain; 99.8 3.5E-20 1.2E-24 162.5 8.4 141 7-159 1-145 (161)
24 3fni_A Putative diflavin flavo 99.8 2.8E-20 9.7E-25 162.8 6.6 142 5-158 3-149 (159)
25 2fz5_A Flavodoxin; alpha/beta 99.8 2.2E-19 7.6E-24 152.0 11.7 132 9-153 2-135 (137)
26 2xod_A NRDI protein, NRDI; fla 99.8 2.4E-19 8.2E-24 149.2 7.1 116 9-153 1-117 (119)
27 1rlj_A NRDI protein; flavoprot 99.7 4.2E-18 1.4E-22 145.4 4.7 123 6-156 8-131 (139)
28 1e5d_A Rubredoxin\:oxygen oxid 99.6 2.5E-15 8.5E-20 149.6 11.6 143 6-158 252-398 (402)
29 4dik_A Flavoprotein; TM0755, e 99.6 1.8E-15 6.3E-20 151.4 10.5 117 5-131 264-387 (410)
30 1ycg_A Nitric oxide reductase; 99.6 1.5E-15 5E-20 151.1 8.3 141 6-156 251-396 (398)
31 2a5l_A Trp repressor binding p 99.6 7E-15 2.4E-19 132.3 11.2 123 6-130 5-146 (200)
32 2ark_A Flavodoxin; FMN, struct 99.6 5.9E-15 2E-19 132.1 9.7 152 4-159 2-168 (188)
33 2ohh_A Type A flavoprotein FPR 99.5 8.8E-15 3E-19 145.7 9.3 145 4-156 254-402 (404)
34 3n3a_C Protein NRDI; ribonucle 99.5 1.2E-14 4E-19 124.5 8.7 126 6-154 20-150 (153)
35 3b6i_A Flavoprotein WRBA; flav 99.5 4.3E-14 1.5E-18 126.9 10.7 121 6-129 1-141 (198)
36 2q9u_A A-type flavoprotein; fl 99.5 3E-14 1E-18 142.5 9.9 143 5-157 255-404 (414)
37 1ydg_A Trp repressor binding p 99.5 5.5E-14 1.9E-18 127.8 8.5 127 1-129 1-152 (211)
38 3d7n_A Flavodoxin, WRBA-like p 99.5 1.1E-14 3.8E-19 131.0 3.7 121 1-128 1-127 (193)
39 2zki_A 199AA long hypothetical 99.5 6.4E-14 2.2E-18 126.0 8.5 122 5-129 3-144 (199)
40 4ici_A Putative flavoprotein; 99.5 3E-13 1E-17 119.4 12.3 125 5-152 12-168 (171)
41 3klb_A Putative flavoprotein; 99.5 5.2E-13 1.8E-17 116.7 12.3 124 6-152 4-160 (162)
42 2vzf_A NADH-dependent FMN redu 99.4 6.7E-13 2.3E-17 119.6 6.7 120 6-132 2-141 (197)
43 3edo_A Flavoprotein, putative 99.3 5.1E-12 1.7E-16 109.1 9.6 105 6-121 3-133 (151)
44 1t5b_A Acyl carrier protein ph 99.2 4.8E-11 1.7E-15 107.0 10.5 147 6-156 1-195 (201)
45 1rtt_A Conserved hypothetical 99.2 5.4E-11 1.8E-15 106.5 9.4 123 1-128 1-143 (193)
46 3gfs_A FMN-dependent NADPH-azo 99.1 6.3E-11 2.1E-15 104.4 6.5 113 7-132 1-135 (174)
47 1sqs_A Conserved hypothetical 99.1 2.2E-10 7.4E-15 106.4 9.8 148 6-158 1-179 (242)
48 2q62_A ARSH; alpha/beta, flavo 99.1 1E-09 3.5E-14 102.3 13.5 122 5-129 33-171 (247)
49 1t0i_A YLR011WP; FMN binding p 99.1 2.3E-10 7.8E-15 102.1 7.5 112 7-128 1-149 (191)
50 2hpv_A FMN-dependent NADH-azor 98.9 6.9E-09 2.4E-13 93.7 12.5 147 6-156 1-201 (208)
51 2fzv_A Putative arsenical resi 98.9 7.2E-09 2.4E-13 98.0 12.4 121 5-128 57-195 (279)
52 1rli_A Trp repressor binding p 98.8 5.3E-09 1.8E-13 92.3 8.2 119 5-129 2-153 (184)
53 3fvw_A Putative NAD(P)H-depend 98.8 2E-08 6.8E-13 89.9 11.6 124 6-133 2-149 (192)
54 3s2y_A Chromate reductase; ura 98.3 4.2E-10 1.4E-14 101.6 0.0 124 1-129 1-145 (199)
55 3rpe_A MDAB, modulator of drug 98.8 7.7E-08 2.6E-12 87.7 14.6 153 4-161 23-217 (218)
56 4hs4_A Chromate reductase; tri 98.8 4.3E-08 1.5E-12 88.3 11.4 118 6-128 6-144 (199)
57 3r6w_A FMN-dependent NADH-azor 98.7 1E-07 3.5E-12 86.4 11.3 147 6-156 1-205 (212)
58 2amj_A Modulator of drug activ 98.6 7.9E-07 2.7E-11 80.2 14.5 146 6-156 12-199 (204)
59 3lcm_A SMU.1420, putative oxid 98.6 1.7E-07 5.9E-12 84.0 9.9 150 7-160 1-189 (196)
60 1d4a_A DT-diaphorase, quinone 98.6 2.4E-07 8.2E-12 87.5 11.2 150 6-158 2-213 (273)
61 3k1y_A Oxidoreductase; structu 98.5 1.5E-07 5E-12 84.3 8.1 123 4-133 9-158 (191)
62 3svl_A Protein YIEF; E. coli C 98.5 3.5E-07 1.2E-11 81.9 9.6 150 5-159 3-182 (193)
63 3f2v_A General stress protein 98.5 2.9E-07 1E-11 82.3 8.6 153 6-159 1-181 (192)
64 3p0r_A Azoreductase; structura 98.5 5.7E-07 1.9E-11 81.6 10.1 149 5-157 3-205 (211)
65 3tem_A Ribosyldihydronicotinam 98.5 5.4E-07 1.8E-11 82.8 9.8 152 6-160 1-214 (228)
66 3u7r_A NADPH-dependent FMN red 98.4 3.5E-06 1.2E-10 75.2 12.8 119 6-128 2-139 (190)
67 3u7i_A FMN-dependent NADH-azor 98.4 4.5E-06 1.5E-10 76.3 13.7 152 3-156 1-210 (223)
68 4gi5_A Quinone reductase; prot 97.9 0.0002 6.9E-09 67.5 15.3 154 5-161 21-243 (280)
69 3ha2_A NADPH-quinone reductase 97.9 6.1E-05 2.1E-09 66.2 10.3 146 7-159 1-167 (177)
70 3l9w_A Glutathione-regulated p 97.9 5.5E-05 1.9E-09 75.4 10.6 153 1-157 231-405 (413)
71 2bmw_A Ferredoxin--NADP reduct 95.4 0.025 8.5E-07 53.3 6.9 47 230-276 21-68 (304)
72 3jqq_A Ferredoxin NADP reducta 94.6 0.058 2E-06 51.3 6.9 51 226-277 11-62 (316)
73 2rc5_A Ferredoxin-NADP reducta 93.7 0.11 3.7E-06 49.1 6.8 48 230-277 21-78 (314)
74 1fnb_A Ferredoxin-NADP+ reduct 93.0 0.16 5.4E-06 48.0 6.7 42 233-275 41-82 (314)
75 2b5o_A FNR, ferredoxin--NADP r 92.1 0.25 8.6E-06 48.5 7.1 46 230-275 122-168 (402)
76 3rht_A (gatase1)-like protein; 90.8 0.29 9.8E-06 45.3 5.5 83 4-99 2-86 (259)
77 1tvm_A PTS system, galactitol- 87.6 1.5 5.1E-05 34.9 6.9 57 5-62 20-78 (113)
78 4e5v_A Putative THUA-like prot 84.0 7.3 0.00025 36.1 10.7 73 6-81 4-84 (281)
79 3vo2_A Putative uncharacterize 83.3 2.1 7.2E-05 40.1 6.8 45 230-275 33-78 (310)
80 3nbm_A PTS system, lactose-spe 80.0 3.2 0.00011 32.8 5.6 99 5-121 5-106 (108)
81 1t0b_A THUA-like protein; treh 79.5 2.2 7.5E-05 39.0 5.2 70 23-101 33-106 (252)
82 2l2q_A PTS system, cellobiose- 77.7 1.9 6.4E-05 34.0 3.7 55 5-62 3-59 (109)
83 1vkr_A Mannitol-specific PTS s 75.0 7.4 0.00025 31.4 6.6 42 5-46 12-56 (125)
84 3czc_A RMPB; alpha/beta sandwi 74.4 0.93 3.2E-05 35.9 1.0 55 3-58 15-72 (110)
85 3gv0_A Transcriptional regulat 70.3 59 0.002 28.9 12.6 135 2-158 4-155 (288)
86 1iow_A DD-ligase, DDLB, D-ALA\ 64.4 27 0.00094 31.6 9.0 46 6-51 2-50 (306)
87 3lo8_A Ferredoxin--NADP reduct 62.2 15 0.00052 33.9 6.8 42 233-275 32-73 (311)
88 4gud_A Imidazole glycerol phos 62.1 4.5 0.00015 35.3 3.0 53 7-73 3-56 (211)
89 1mkz_A Molybdenum cofactor bio 61.2 7.4 0.00025 33.2 4.1 47 89-135 7-53 (172)
90 1e2b_A Enzyme IIB-cellobiose; 60.6 4.7 0.00016 31.6 2.5 56 6-64 3-60 (106)
91 3s40_A Diacylglycerol kinase; 59.7 27 0.00091 32.4 8.0 91 1-104 3-101 (304)
92 3vsj_A 2-amino-5-chlorophenol 58.5 57 0.0019 29.6 10.0 79 20-105 89-179 (271)
93 3egc_A Putative ribose operon 57.3 44 0.0015 29.7 9.0 136 2-159 4-154 (291)
94 3qk7_A Transcriptional regulat 56.6 1.1E+02 0.0037 27.2 14.5 136 1-158 1-154 (294)
95 4eg0_A D-alanine--D-alanine li 54.1 14 0.00047 34.3 5.0 41 6-46 13-56 (317)
96 3k4h_A Putative transcriptiona 52.6 1E+02 0.0036 27.1 10.8 136 2-159 4-160 (292)
97 1ccw_A Protein (glutamate muta 51.2 26 0.00088 28.4 5.7 121 10-156 5-134 (137)
98 2fgx_A Putative thioredoxin; N 49.5 36 0.0012 26.4 6.0 40 6-45 29-68 (107)
99 2xhz_A KDSD, YRBH, arabinose 5 49.5 96 0.0033 25.6 9.4 68 9-82 51-121 (183)
100 2iuy_A Avigt4, glycosyltransfe 49.0 16 0.00055 33.6 4.6 40 6-45 3-57 (342)
101 1wcw_A Uroporphyrinogen III sy 48.7 12 0.00039 33.7 3.4 82 24-126 19-112 (261)
102 3dbi_A Sugar-binding transcrip 48.6 1.6E+02 0.0054 26.8 12.0 133 5-159 60-210 (338)
103 3ju3_A Probable 2-oxoacid ferr 45.5 15 0.00052 29.1 3.3 37 8-48 16-52 (118)
104 3cs3_A Sugar-binding transcrip 45.5 1.5E+02 0.0053 25.8 15.3 134 2-158 4-146 (277)
105 3ff4_A Uncharacterized protein 45.1 1.1E+02 0.0039 24.1 9.5 97 6-127 4-109 (122)
106 3qyf_A Crispr-associated prote 45.0 21 0.0007 33.8 4.5 38 10-47 95-132 (324)
107 3l6u_A ABC-type sugar transpor 44.9 1.3E+02 0.0044 26.5 10.0 136 2-157 4-162 (293)
108 3re1_A Uroporphyrinogen-III sy 44.7 29 0.001 31.3 5.6 85 21-129 23-118 (269)
109 2k8s_A Thioredoxin; dimer, str 44.6 19 0.00064 25.6 3.4 39 7-45 2-40 (80)
110 3tb6_A Arabinose metabolism tr 44.4 1.5E+02 0.0052 26.0 10.4 136 6-159 15-165 (298)
111 2kyr_A Fructose-like phosphotr 44.3 22 0.00077 28.0 4.0 58 6-63 5-70 (111)
112 2xdq_A Light-independent proto 44.0 83 0.0028 30.8 9.1 108 8-128 198-345 (460)
113 2m1z_A LMO0427 protein; homolo 42.5 30 0.001 27.1 4.4 77 6-101 2-86 (106)
114 3e61_A Putative transcriptiona 42.1 1.5E+02 0.0051 25.8 9.9 133 2-158 4-150 (277)
115 3jy6_A Transcriptional regulat 41.5 1.8E+02 0.0061 25.4 10.5 106 6-128 7-127 (276)
116 1jeo_A MJ1247, hypothetical pr 41.3 1.5E+02 0.005 24.4 10.1 65 10-82 43-107 (180)
117 3lzd_A DPH2; diphthamide biosy 40.7 17 0.00057 35.2 3.2 49 6-54 264-313 (378)
118 2duw_A Putative COA-binding pr 40.5 1.3E+02 0.0043 24.4 8.4 102 7-133 14-127 (145)
119 3g85_A Transcriptional regulat 40.4 1.9E+02 0.0064 25.3 12.0 133 4-158 9-155 (289)
120 4es6_A Uroporphyrinogen-III sy 39.6 39 0.0013 30.1 5.4 83 22-128 16-109 (254)
121 3fro_A GLGA glycogen synthase; 39.5 24 0.0008 33.4 4.2 39 6-44 2-44 (439)
122 3k9c_A Transcriptional regulat 39.2 2E+02 0.0069 25.3 11.5 131 5-159 11-154 (289)
123 2gek_A Phosphatidylinositol ma 38.5 29 0.00098 32.5 4.6 43 4-46 18-63 (406)
124 3aek_A Light-independent proto 37.8 70 0.0024 31.2 7.4 109 7-128 184-336 (437)
125 3mw8_A Uroporphyrinogen-III sy 37.7 26 0.00088 31.0 3.9 76 24-126 13-96 (240)
126 2r4q_A Phosphotransferase syst 37.5 33 0.0011 26.8 4.0 58 6-63 2-67 (106)
127 3c48_A Predicted glycosyltrans 37.0 24 0.0008 33.7 3.8 42 4-45 18-69 (438)
128 3evt_A Phosphoglycerate dehydr 36.7 34 0.0011 32.2 4.7 33 88-128 133-165 (324)
129 3huu_A Transcription regulator 36.6 2E+02 0.0067 25.6 10.0 132 5-158 21-172 (305)
130 4g2n_A D-isomer specific 2-hyd 36.3 34 0.0011 32.6 4.6 33 88-128 169-201 (345)
131 1y5e_A Molybdenum cofactor bio 36.3 16 0.00056 30.8 2.2 46 90-135 11-56 (169)
132 3gg9_A D-3-phosphoglycerate de 36.2 34 0.0012 32.6 4.7 33 88-128 156-188 (352)
133 3pzy_A MOG; ssgcid, seattle st 36.1 9.3 0.00032 32.3 0.6 46 90-135 5-52 (164)
134 1m3s_A Hypothetical protein YC 36.0 1.8E+02 0.0062 23.9 9.9 65 10-82 40-104 (186)
135 3dfz_A SIRC, precorrin-2 dehyd 35.9 83 0.0028 27.8 6.9 89 11-123 94-187 (223)
136 3mc3_A DSRE/DSRF-like family p 35.8 57 0.002 26.1 5.4 43 3-45 12-56 (134)
137 3sbx_A Putative uncharacterize 35.7 21 0.00073 30.9 2.9 36 1-37 8-46 (189)
138 2x7x_A Sensor protein; transfe 35.6 2.4E+02 0.0084 25.3 10.6 137 1-158 1-156 (325)
139 2pjk_A 178AA long hypothetical 35.4 7.7 0.00026 33.3 -0.1 47 89-135 12-65 (178)
140 3hg7_A D-isomer specific 2-hyd 35.1 37 0.0013 32.0 4.7 32 88-127 136-167 (324)
141 1vim_A Hypothetical protein AF 34.7 2.1E+02 0.0071 24.1 9.7 65 10-82 50-114 (200)
142 3gvx_A Glycerate dehydrogenase 34.4 34 0.0012 31.7 4.2 31 89-127 119-149 (290)
143 2pi1_A D-lactate dehydrogenase 34.0 31 0.0011 32.6 4.0 31 89-127 138-168 (334)
144 3pp8_A Glyoxylate/hydroxypyruv 33.9 35 0.0012 31.9 4.3 33 88-128 135-167 (315)
145 2x6q_A Trehalose-synthase TRET 33.9 48 0.0016 31.3 5.4 41 5-45 39-80 (416)
146 2rgy_A Transcriptional regulat 33.6 2.4E+02 0.0084 24.7 11.2 134 3-158 5-156 (290)
147 3kke_A LACI family transcripti 33.0 2.6E+02 0.0088 24.7 12.6 132 5-158 14-159 (303)
148 1leh_A Leucine dehydrogenase; 32.8 62 0.0021 31.0 5.9 31 89-127 170-200 (364)
149 3lvu_A ABC transporter, peripl 32.7 43 0.0015 29.6 4.6 37 8-44 129-165 (258)
150 4dgs_A Dehydrogenase; structur 32.4 43 0.0015 31.7 4.7 32 88-127 167-198 (340)
151 2yq5_A D-isomer specific 2-hyd 32.4 34 0.0012 32.5 4.0 31 89-127 145-175 (343)
152 1dxy_A D-2-hydroxyisocaproate 32.2 35 0.0012 32.2 4.0 31 89-127 142-172 (333)
153 2ct6_A SH3 domain-binding glut 32.1 91 0.0031 23.8 5.9 41 5-45 6-48 (111)
154 4hy3_A Phosphoglycerate oxidor 32.0 37 0.0013 32.5 4.2 33 88-128 172-204 (365)
155 2g76_A 3-PGDH, D-3-phosphoglyc 31.9 45 0.0015 31.5 4.7 32 88-127 161-192 (335)
156 1mx3_A CTBP1, C-terminal bindi 31.8 45 0.0015 31.7 4.7 31 89-127 165-195 (347)
157 1wwk_A Phosphoglycerate dehydr 31.6 46 0.0016 30.9 4.7 32 88-127 138-169 (307)
158 2pw6_A Uncharacterized protein 31.6 44 0.0015 30.6 4.4 74 20-105 94-177 (271)
159 1c1d_A L-phenylalanine dehydro 31.5 47 0.0016 31.7 4.8 31 89-127 172-202 (355)
160 1xdw_A NAD+-dependent (R)-2-hy 31.4 37 0.0013 32.0 4.0 31 89-127 143-173 (331)
161 3jtm_A Formate dehydrogenase, 31.3 40 0.0014 32.1 4.3 31 89-127 161-191 (351)
162 3p9z_A Uroporphyrinogen III co 31.2 45 0.0016 29.3 4.4 87 6-126 110-206 (229)
163 2ekl_A D-3-phosphoglycerate de 30.6 48 0.0016 30.9 4.6 32 88-127 138-169 (313)
164 4e5n_A Thermostable phosphite 30.6 35 0.0012 32.1 3.7 31 89-127 142-172 (330)
165 3t66_A Nickel ABC transporter 30.5 1E+02 0.0035 30.3 7.4 55 8-62 331-387 (496)
166 3oet_A Erythronate-4-phosphate 30.4 39 0.0013 32.7 4.0 33 88-128 115-147 (381)
167 2r48_A Phosphotransferase syst 30.3 50 0.0017 25.7 3.9 58 6-63 2-67 (106)
168 3t4e_A Quinate/shikimate dehyd 30.1 94 0.0032 28.9 6.6 49 67-127 127-175 (312)
169 2xpn_B SPT6, chromatin structu 29.9 25 0.00084 19.7 1.4 12 92-103 3-14 (26)
170 3iwt_A 178AA long hypothetical 29.9 15 0.00051 31.2 0.9 47 90-136 13-66 (178)
171 2cuk_A Glycerate dehydrogenase 29.7 52 0.0018 30.6 4.7 31 89-127 141-171 (311)
172 3vsj_B 2-amino-5-chlorophenol 29.6 1.5E+02 0.0052 27.4 8.0 82 20-105 99-195 (312)
173 3g1w_A Sugar ABC transporter; 29.6 2.1E+02 0.0072 25.2 8.9 134 5-159 3-155 (305)
174 3m3p_A Glutamine amido transfe 29.5 1.1E+02 0.0038 27.3 6.8 53 6-62 3-57 (250)
175 1sc6_A PGDH, D-3-phosphoglycer 29.4 49 0.0017 32.1 4.6 31 89-127 142-172 (404)
176 3no5_A Uncharacterized protein 29.4 98 0.0033 28.4 6.4 81 18-105 121-212 (275)
177 1gdh_A D-glycerate dehydrogena 29.2 53 0.0018 30.7 4.7 31 89-127 143-173 (320)
178 3k5p_A D-3-phosphoglycerate de 29.1 52 0.0018 32.2 4.7 32 89-128 153-184 (416)
179 1qp8_A Formate dehydrogenase; 29.0 45 0.0015 30.9 4.1 31 89-127 121-151 (303)
180 2r6h_A NADH:ubiquinone oxidore 28.9 80 0.0027 28.4 5.8 38 233-275 13-51 (290)
181 2a33_A Hypothetical protein; s 28.9 69 0.0024 28.2 5.1 39 93-131 14-53 (215)
182 2o4c_A Erythronate-4-phosphate 28.8 42 0.0015 32.3 4.0 32 89-128 113-144 (380)
183 1b0a_A Protein (fold bifunctio 28.8 3.4E+02 0.012 24.9 10.7 111 7-127 34-187 (288)
184 1t1v_A SH3BGRL3, SH3 domain-bi 28.6 92 0.0031 22.7 5.2 36 7-45 2-42 (93)
185 3h9u_A Adenosylhomocysteinase; 28.5 52 0.0018 32.4 4.6 45 74-128 195-239 (436)
186 3sbx_A Putative uncharacterize 28.2 86 0.0029 27.0 5.5 39 93-131 14-52 (189)
187 1f0k_A MURG, UDP-N-acetylgluco 28.2 56 0.0019 30.0 4.7 38 7-45 7-44 (364)
188 3l4e_A Uncharacterized peptida 28.1 16 0.00053 32.1 0.6 54 6-59 27-85 (206)
189 3som_A Methylmalonic aciduria 28.0 21 0.00072 32.8 1.5 36 12-47 1-36 (286)
190 2a33_A Hypothetical protein; s 28.0 43 0.0015 29.6 3.6 33 6-38 13-48 (215)
191 3d8t_A Uroporphyrinogen-III sy 27.9 23 0.00079 32.4 1.8 82 24-126 44-137 (286)
192 3kb6_A D-lactate dehydrogenase 27.8 46 0.0016 31.4 4.0 33 88-128 137-169 (334)
193 2r60_A Glycosyl transferase, g 27.7 46 0.0016 32.5 4.1 29 16-44 31-59 (499)
194 3tnl_A Shikimate dehydrogenase 27.6 1.1E+02 0.0038 28.5 6.6 45 72-127 137-181 (315)
195 3l49_A ABC sugar (ribose) tran 27.5 3E+02 0.01 23.8 12.6 134 5-158 4-153 (291)
196 3n58_A Adenosylhomocysteinase; 27.5 56 0.0019 32.4 4.6 32 89-128 244-275 (464)
197 2iuf_A Catalase; oxidoreductas 27.3 1.4E+02 0.0048 31.1 7.8 88 6-101 529-641 (688)
198 1j4a_A D-LDH, D-lactate dehydr 27.2 48 0.0016 31.2 4.0 31 89-127 143-173 (333)
199 4eyg_A Twin-arginine transloca 26.4 1.9E+02 0.0065 26.3 8.1 84 6-102 139-231 (368)
200 3pam_A Transmembrane protein; 25.7 64 0.0022 28.5 4.4 35 8-44 130-164 (259)
201 3o8q_A Shikimate 5-dehydrogena 25.6 1.3E+02 0.0045 27.4 6.6 49 67-127 105-153 (281)
202 3a9s_A D-arabinose isomerase; 25.6 1.2E+02 0.0041 31.1 6.7 118 20-157 35-178 (595)
203 1hyu_A AHPF, alkyl hydroperoxi 25.5 1.7E+02 0.0057 29.0 7.9 110 7-126 119-238 (521)
204 2dbq_A Glyoxylate reductase; D 25.5 67 0.0023 30.1 4.7 31 89-127 147-177 (334)
205 3ba1_A HPPR, hydroxyphenylpyru 25.5 60 0.002 30.6 4.3 31 89-127 161-191 (333)
206 3gbv_A Putative LACI-family tr 25.5 3.3E+02 0.011 23.6 12.6 142 2-159 4-168 (304)
207 3r5x_A D-alanine--D-alanine li 25.4 24 0.00081 32.3 1.4 56 5-60 2-62 (307)
208 2qzs_A Glycogen synthase; glyc 25.3 48 0.0017 32.1 3.8 38 7-44 1-43 (485)
209 3d4o_A Dipicolinate synthase s 25.3 70 0.0024 29.2 4.7 31 89-127 152-182 (293)
210 2d0i_A Dehydrogenase; structur 25.1 60 0.0021 30.5 4.2 32 88-127 142-173 (333)
211 2i2c_A Probable inorganic poly 25.0 83 0.0028 28.5 5.1 31 7-38 1-31 (272)
212 2l1l_A CAMP-dependent protein 24.9 22 0.00074 20.7 0.6 16 14-29 1-16 (27)
213 2nac_A NAD-dependent formate d 24.6 61 0.0021 31.4 4.2 31 89-127 188-218 (393)
214 3miz_A Putative transcriptiona 24.4 91 0.0031 27.8 5.3 133 4-159 11-160 (301)
215 1t35_A Hypothetical protein YV 24.4 91 0.0031 26.8 4.9 39 93-131 2-41 (191)
216 1tvc_A Methane monooxygenase c 24.2 72 0.0025 28.0 4.4 38 233-275 14-56 (250)
217 1fy2_A Aspartyl dipeptidase; s 24.1 20 0.00069 31.8 0.6 54 6-59 31-85 (229)
218 2w2k_A D-mandelate dehydrogena 23.9 75 0.0026 30.0 4.7 31 89-127 160-191 (348)
219 2h3h_A Sugar ABC transporter, 23.9 3.8E+02 0.013 23.7 10.1 132 7-158 2-151 (313)
220 3don_A Shikimate dehydrogenase 23.8 88 0.003 28.6 5.0 49 67-127 96-144 (277)
221 2gcg_A Glyoxylate reductase/hy 23.7 64 0.0022 30.1 4.1 31 89-127 152-182 (330)
222 3hcw_A Maltose operon transcri 23.6 3.7E+02 0.013 23.5 9.5 131 6-158 7-159 (295)
223 2d59_A Hypothetical protein PH 23.6 2.8E+02 0.0096 22.1 8.2 99 7-132 23-133 (144)
224 1rzu_A Glycogen synthase 1; gl 23.6 53 0.0018 31.8 3.7 38 7-44 1-43 (485)
225 2ji4_A Phosphoribosyl pyrophos 23.5 4.5E+02 0.016 24.9 10.2 118 6-130 27-155 (379)
226 3fbt_A Chorismate mutase and s 23.4 1.1E+02 0.0037 28.1 5.5 49 67-127 101-149 (282)
227 2j6i_A Formate dehydrogenase; 23.4 65 0.0022 30.7 4.1 31 89-127 161-192 (364)
228 3qua_A Putative uncharacterize 23.3 1.2E+02 0.004 26.4 5.5 39 93-131 23-61 (199)
229 3gvp_A Adenosylhomocysteinase 23.3 75 0.0026 31.2 4.6 32 89-128 217-248 (435)
230 1rcu_A Conserved hypothetical 23.2 93 0.0032 26.9 4.8 37 93-129 24-64 (195)
231 1gtm_A Glutamate dehydrogenase 23.2 77 0.0026 30.9 4.7 30 90-127 210-240 (419)
232 1nbw_B Glycerol dehydratase re 23.1 1.6E+02 0.0053 23.4 5.6 40 5-45 4-43 (117)
233 2pia_A Phthalate dioxygenase r 23.0 1.1E+02 0.0039 28.1 5.7 38 233-275 12-51 (321)
234 3rqt_A Putative uncharacterize 23.0 1.4E+02 0.0047 29.3 6.7 55 8-62 329-385 (486)
235 1ep3_B Dihydroorotate dehydrog 23.0 75 0.0026 28.2 4.3 38 233-275 9-46 (262)
236 3d64_A Adenosylhomocysteinase; 23.0 74 0.0025 31.8 4.6 32 89-128 274-305 (494)
237 1qfj_A Protein (flavin reducta 22.9 1E+02 0.0035 26.5 5.2 37 233-275 6-42 (232)
238 1jr2_A Uroporphyrinogen-III sy 22.8 26 0.00089 32.0 1.1 80 26-126 39-135 (286)
239 3jvd_A Transcriptional regulat 22.7 2.8E+02 0.0095 25.1 8.4 124 6-158 64-202 (333)
240 2iw1_A Lipopolysaccharide core 22.5 66 0.0022 29.5 4.0 38 7-44 1-40 (374)
241 3jyo_A Quinate/shikimate dehyd 22.3 1.6E+02 0.0053 26.9 6.4 49 67-127 106-154 (283)
242 2rir_A Dipicolinate synthase, 22.3 86 0.0029 28.6 4.7 31 89-127 154-184 (300)
243 3tum_A Shikimate dehydrogenase 22.3 1.7E+02 0.0057 26.5 6.6 50 67-128 104-153 (269)
244 3td9_A Branched chain amino ac 22.3 3.7E+02 0.013 24.3 9.3 71 6-83 149-227 (366)
245 3h75_A Periplasmic sugar-bindi 21.9 4.4E+02 0.015 23.7 11.7 131 6-158 3-173 (350)
246 1b4u_B LIGA, LIGB, protocatech 21.8 2E+02 0.0069 26.4 7.1 82 21-105 100-195 (302)
247 1p32_A Mitochondrial matrix pr 21.5 61 0.0021 28.3 3.3 42 317-360 159-200 (209)
248 3o6q_A Stage II sporulation pr 21.5 70 0.0024 26.4 3.3 38 7-44 36-73 (157)
249 2fb6_A Conserved hypothetical 21.4 1.2E+02 0.0042 23.7 4.8 90 6-128 7-99 (117)
250 2x3g_A SIRV1 hypothetical prot 21.4 92 0.0031 23.7 3.7 32 16-47 26-57 (119)
251 3eeq_A Putative cobalamin bios 21.3 69 0.0024 30.3 3.8 56 6-63 8-64 (336)
252 1weh_A Conserved hypothetical 21.3 98 0.0033 26.0 4.4 38 94-131 3-41 (171)
253 3clk_A Transcription regulator 21.3 4.1E+02 0.014 23.1 12.0 134 2-158 4-153 (290)
254 2iks_A DNA-binding transcripti 21.2 4.1E+02 0.014 23.1 9.2 131 5-157 19-165 (293)
255 1yqh_A DUF77, IG hypothetical 21.2 2.9E+02 0.0099 21.4 7.1 63 68-138 22-87 (109)
256 3o6p_A Peptide ABC transporter 21.2 73 0.0025 27.5 3.7 36 8-44 100-137 (229)
257 3jv1_A P22 protein; MAM33 fami 21.1 65 0.0022 27.6 3.3 43 316-360 133-175 (182)
258 1ydh_A AT5G11950; structural g 21.0 1.2E+02 0.0042 26.6 5.2 39 93-131 10-49 (216)
259 1v8b_A Adenosylhomocysteinase; 20.8 76 0.0026 31.6 4.1 32 89-128 254-285 (479)
260 3bbl_A Regulatory protein of L 20.8 4.2E+02 0.014 23.0 12.1 129 7-158 5-153 (287)
261 3kbq_A Protein TA0487; structu 20.5 25 0.00085 30.0 0.4 56 93-150 4-61 (172)
262 2a9v_A GMP synthase; structura 20.4 2.4E+02 0.0081 24.2 7.0 50 6-62 13-63 (212)
263 1r7h_A NRDH-redoxin; thioredox 20.3 1.3E+02 0.0044 20.2 4.3 35 7-45 1-35 (75)
264 2egg_A AROE, shikimate 5-dehyd 20.1 1.8E+02 0.0061 26.5 6.4 46 72-127 123-168 (297)
265 3rot_A ABC sugar transporter, 20.0 4.4E+02 0.015 23.0 11.3 133 7-159 4-159 (297)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=4e-64 Score=528.90 Aligned_cols=358 Identities=26% Similarity=0.437 Sum_probs=291.1
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCC-----CCCeEEEEeecCCCCCCchhHHHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-----EEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~-----~~~~ii~~~sT~g~G~~p~~~~~f~~~ 79 (399)
.+++++|+|||+|||||++|++|++.+.+.|+.+.++++++++.+++. +++.+||++||||+|++|+||..|+++
T Consensus 17 ~~~~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~~pd~~~~F~~~ 96 (618)
T 3qe2_A 17 TGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDW 96 (618)
T ss_dssp HTCSEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGBCCGGGHHHHHH
T ss_pred cCCeEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCCCCHHHHHHHHH
Confidence 357799999999999999999999999999999999999999877763 478999999999999999999999999
Q ss_pred HHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhh
Q 015866 80 LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 80 L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (399)
|.... ..|+|++|||||+||++|+|||.++|.++++|+++||+++++++++|++. +++++|+.|.+++|++|.+.
T Consensus 97 L~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~--~~~~~~~~W~~~l~~~l~~~ 171 (618)
T 3qe2_A 97 LQETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWLAVCEH 171 (618)
T ss_dssp HHHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCC--CcHHHHHHHHHHHHHHHHHH
Confidence 98743 25899999999999999999999999999999999999999999999975 48999999999999999988
Q ss_pred CCCCCCCCCCCccccccccCCCceEEEEeccCccccccccccchhhhhhhhhhhhccccccccCcCCCCccee-eeeeee
Q 015866 160 DPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQ 238 (399)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 238 (399)
++ ..... +.. ..+.+.+............. .+... . ....... ..+...+++. +|+.|+
T Consensus 172 ~~--~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~----~---~~~~~~~--~~~~~~~~~~a~v~~n~ 231 (618)
T 3qe2_A 172 FG--VEATG-----EES--SIRQYELVVHTDIDAAKVYM--GEMGR----L---KSYENQK--PPFDAKNPFLAAVTTNR 231 (618)
T ss_dssp HT--CCCC--------C--CCCSEEEEECTTCCGGGSBC--SCCSS----T---TTTTSCC--SCCSSSSCEEEEEEEEE
T ss_pred hC--CCccc-----ccc--cccceeEEeccccccccccc--ccccc----c---ccccccC--CCcccCCcEEEEEEeEE
Confidence 76 32211 111 23566665532111000000 00000 0 0000000 1112233455 999999
Q ss_pred ecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCCCCCCCC
Q 015866 239 PLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPI 318 (399)
Q Consensus 239 ~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~~~~~~~ 318 (399)
+||+ ++.|+|+||+|++++++++|+|||||+|||.|+++.|+++|++||+++++.|.++........+ .+++.|+
T Consensus 232 ~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~~----~~~p~~~ 306 (618)
T 3qe2_A 232 KLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKK----HPFPCPT 306 (618)
T ss_dssp ECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTCSCC----SSSSSSE
T ss_pred EcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccccCC----CCCCCce
Confidence 9996 5689999999999988999999999999999999999999999999999999998654321111 1266899
Q ss_pred CHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhc--CcccHHHHHHHHhcCCCCHHHHhhhcccCCCCcc
Q 015866 319 KLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA--SPEGRDDLYKYNQKERRTVLEVSFGEYIICAFHL 394 (399)
Q Consensus 319 tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~--s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~~~ 394 (399)
|++++|++|+||++ +|+|+||+.||+||+|+.+|++|++|+ +++|+++|++|+.++++|++|||++||+ |.+|+
T Consensus 307 tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps-~~~p~ 382 (618)
T 3qe2_A 307 SYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPS-LRPPI 382 (618)
T ss_dssp EHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTT-BCCCH
T ss_pred EHHHhhhhEeecCC-CCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCc-cCCCH
Confidence 99999999999999 999999999999999999999999999 7889999999999999999999999887 55554
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=6.1e-62 Score=517.44 Aligned_cols=363 Identities=23% Similarity=0.316 Sum_probs=292.9
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHH-hcCCCcEEEeCCCCCcCCCCCC-CeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESE-RRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~-~~g~~~~v~~l~~~~~~~l~~~-~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.+++++|+|+|+|||||++|++|++.|. +.|++++++++++++..++..+ +.+||++||||+|++|+++..|+++|..
T Consensus 48 ~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~ 127 (682)
T 2bpo_A 48 NNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICN 127 (682)
T ss_dssp TTCSEEEEEECSSSHHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHT
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999999998 8899999999999999888889 9999999999999999999999999986
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCCC
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPS 162 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~~ 162 (399)
.. ...|+|++|||||+||++|+|||.++|.++++|+++||+++.+++++|++. .+.++.|++|.+++|++|...++
T Consensus 128 ~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~-~~~~~~~~~W~~~l~~~l~~~~~- 203 (682)
T 2bpo_A 128 AE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGA-GTTDEDYMAWKDSILEVLKDELH- 203 (682)
T ss_dssp CC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTT-TCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCC-cccHHHHHHHHHHHHHHHHhhcC-
Confidence 53 125899999999999999999999999999999999999999999999986 46899999999999999988776
Q ss_pred CCCCCCCCccccccccCCCceEEEEeccC-cccccccccc-chhhhhhhhhhhhccccccccCcCCCCccee-eeeeeee
Q 015866 163 FFPQGPDHVIEEMKLIDQPKVHITYHSID-NAASRLSNAS-DLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQP 239 (399)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 239 (399)
..... .. ..+.+.+...... ......++.. .+.... .... ...... ..+...+++. +|+.|++
T Consensus 204 -~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~~~~~p~~a~v~~~~~ 269 (682)
T 2bpo_A 204 -LDEQE------AK--FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQ--LNRN-ADGIQL--GPFDLSQPYIAPIVKSRE 269 (682)
T ss_dssp -CCCCC------CC--CCCSBCCEECSSCCTTSCSSCSSGGGSTTSC--CCCC-TTCCBC--SCCBTTBCCCEEEEEEEE
T ss_pred -Ccccc------cc--cCCcceeEecccCCccccccCcccccccccc--cccc-cccccc--CcccCCCceEEEEEEEEE
Confidence 33211 00 2344444332110 0000000000 000000 0000 000000 0111223444 9999999
Q ss_pred cCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCCCCcCCCCCCCCCC
Q 015866 240 LTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIK 319 (399)
Q Consensus 240 Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~p~~~~~~~~~~~t 319 (399)
||+ +++|+|+||+|++++++++|+|||||+|||.|+++.|+++|++||+++++.|.+....+....| +|.|+|
T Consensus 270 L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~p------~p~~~t 342 (682)
T 2bpo_A 270 LFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDPTVKVP------FPTPTT 342 (682)
T ss_dssp CCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSSTTCCCS------SCSSEE
T ss_pred ccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCcccCCC------CCCCcc
Confidence 999 8889999999999888999999999999999999999999999999999999997644332233 669999
Q ss_pred HHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhccc---CCCCccc
Q 015866 320 LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYI---ICAFHLI 395 (399)
Q Consensus 320 l~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~---~~~~~~~ 395 (399)
++++|++|+||++ +|+|+||+.||+||+|+.+|++|++|+ +|+++|++|+.++++|++|||++|+. .|.+|+-
T Consensus 343 l~~~l~~~ldi~~-~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p~~ 418 (682)
T 2bpo_A 343 IGAAIKHYLEITG-PVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQ 418 (682)
T ss_dssp HHHHHHHTBCCSS-CCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSCHH
T ss_pred HHHHHHHhhhccC-CCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCCHH
Confidence 9999999999999 999999999999999999999999999 59999999999999999999999983 5777753
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=9.4e-61 Score=508.44 Aligned_cols=355 Identities=22% Similarity=0.348 Sum_probs=285.0
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
++++++|+|||+|||||.+|++|++.+. +|+++++++|+++++.+|..++++||++||||+|+||+|++.|+++|....
T Consensus 10 ~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~~~~~v~~m~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~ 88 (688)
T 1tll_A 10 KRVKATILYATETGKSQAYAKTLCEIFK-HAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMR 88 (688)
T ss_dssp CSCEEEEEEECSSSHHHHHHHHHHHHHT-TTSEEEEEETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHT
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHh-cCCCcEEeecccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhcc
Confidence 5678999999999999999999999986 789999999999999999999999999999999999999999999998762
Q ss_pred ----------------------------CC-----------ccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCe
Q 015866 85 ----------------------------LS-----------KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125 (399)
Q Consensus 85 ----------------------------~~-----------~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~ 125 (399)
++ ...|+|++|||||+||++|+|||.++|.++++|.++||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~ 168 (688)
T 1tll_A 89 HPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGE 168 (688)
T ss_dssp C-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred CCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCc
Confidence 11 135899999999999999999999999999999999999
Q ss_pred eeccceeecCCCCCCcccchhhHHHHHHHHHHhhCCCCCCCCCCC-----cc--ccccccCCCceEEEEeccCccccccc
Q 015866 126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDH-----VI--EEMKLIDQPKVHITYHSIDNAASRLS 198 (399)
Q Consensus 126 ~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (399)
++++++++|+.. |.++.|++|.+++|+++++.++ +...... .+ ..... .++.+.+......
T Consensus 169 rl~~~~~~D~~~--g~e~~f~~W~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------- 236 (688)
T 1tll_A 169 RILKMREGDELC--GQEEAFRTWAKKVFKAACDVFC--VGDDVNIEKPNNSLISNDRSW-KRNKFRLTYVAEA------- 236 (688)
T ss_dssp ESSCCEEEETTT--THHHHHHHHHHHHHHHHHHHHT--CCSSSCCC-------CCSSSC-CTTTEEEEECSCC-------
T ss_pred eeecceeeccCC--CcHHHHHHHHHHHHHHHHHhcC--CCccccccccccccccccccc-CCcceEEeccccc-------
Confidence 999999999974 4899999999999999988765 3221100 00 00000 2234444322110
Q ss_pred cccchhhhhhhhhhhhccccccccCcCCCCccee-eeeeeeecCCCCCCceeEEEEEEecCC-CcccccCCEEEEccCCC
Q 015866 199 NASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQD 276 (399)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~-~~~Y~~GD~l~I~P~N~ 276 (399)
..+.. ... ..+ ..+++. +|++|++||+.+++|+++||+|+++++ ++.|+|||||+|||.|+
T Consensus 237 --~~~~~------~~~--------~~~-~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~ 299 (688)
T 1tll_A 237 --PDLTQ------GLS--------NVH-KKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH 299 (688)
T ss_dssp --CCHHH------HHH--------HHT-TSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred --ccccc------ccc--------ccc-cCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCC
Confidence 00000 000 001 122344 999999999999999999999999764 79999999999999999
Q ss_pred HHHHHHHHHHcCC--CCCcEEEEeecCCC----CCCCCcC-CCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCC
Q 015866 277 PAAVDTFIQRCNL--DPDALITVQHKEMK----NYLPDIH-KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349 (399)
Q Consensus 277 ~~~V~~~l~~l~l--~~~~~v~i~~~~~~----~~~p~~~-~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d 349 (399)
++.|+++|++||+ ++++.|.+...... ...+.|. ...+| ++|++++|++|+||++ +|+|+||+.||+||+|
T Consensus 300 ~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~-~p~~~~l~~la~~a~~ 377 (688)
T 1tll_A 300 EDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATN 377 (688)
T ss_dssp HHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCC
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCCC-CccHHHHHHhheeCCC-CCCHHHHHHHHHHcCC
Confidence 9999999999986 67888988643111 0111122 12355 9999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCCCcc
Q 015866 350 EHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICAFHL 394 (399)
Q Consensus 350 ~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~~~~ 394 (399)
+.+|++|++|++ ++++|.+|+..++++++|||.+|++ |.+|+
T Consensus 378 ~~ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps-~~~p~ 419 (688)
T 1tll_A 378 EKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPS-IQMPA 419 (688)
T ss_dssp HHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTT-BCCCH
T ss_pred HHHHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCC-cCCCH
Confidence 999999999997 7889999999999999999999887 45554
No 4
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=276.35 Aligned_cols=152 Identities=31% Similarity=0.470 Sum_probs=142.3
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhc
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~ 83 (399)
+++++++|+|||+|||||.+|++|++.+ +.|+.++++++++++++++..++.+||++||||+|++|+|+..|+++|...
T Consensus 38 ~~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~ 116 (219)
T 3hr4_A 38 ASRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML 116 (219)
T ss_dssp HTSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHC
T ss_pred hcCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhc
Confidence 3578899999999999999999999998 579999999999999889999999999999999999999999999999865
Q ss_pred cCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCC
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (399)
. ..++|++|||||+||++|++||.+++.++++|+++||++++|++++|++. |++++|+.|.+.+|++|++.++
T Consensus 117 ~---~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~--~~e~~~~~W~~~l~~~l~~~~~ 189 (219)
T 3hr4_A 117 K---ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELS--GQEDAFRSWAVQTFKAACETFD 189 (219)
T ss_dssp C---CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTS--CHHHHHHHHHHHHHHHHHHHTT
T ss_pred c---hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCC--CcHHHHHHHHHHHHHHHHHHcC
Confidence 3 24789999999999999999999999999999999999999999999985 4899999999999999999887
No 5
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.97 E-value=1.4e-31 Score=271.24 Aligned_cols=160 Identities=23% Similarity=0.374 Sum_probs=142.8
Q ss_pred CCccee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCC-
Q 015866 227 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKN- 304 (399)
Q Consensus 227 ~~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~- 304 (399)
..++|. +|+.|++||+ +++|+|+||+|++++++++|+|||||+|||.|+++.|+++|++||+++++.|++.......
T Consensus 59 ~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~ 137 (458)
T 3qfs_A 59 AKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESN 137 (458)
T ss_dssp SSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTCS
T ss_pred CCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCCEEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcccc
Confidence 344566 9999999998 5689999999999988999999999999999999999999999999999999997643321
Q ss_pred -CCCCcCCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcC--cccHHHHHHHHhcCCCCHHH
Q 015866 305 -YLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS--PEGRDDLYKYNQKERRTVLE 381 (399)
Q Consensus 305 -~~p~~~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s--~~~~~~~~~~~~~~~~tlld 381 (399)
..| ++.|+|++++|++|+||++ +|+|+||+.||+||+|+.+|++|++|++ ++|+++|++|+.++++|++|
T Consensus 138 ~~~p------~~~~~tl~~~l~~~~di~~-~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ild 210 (458)
T 3qfs_A 138 KKHP------FPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILA 210 (458)
T ss_dssp CCCS------SSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHH
T ss_pred cCCC------CCCCeeHHHHHHhcEeccC-CCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHH
Confidence 223 6689999999999999999 9999999999999999999999999987 57899999999999999999
Q ss_pred HhhhcccCCCCccc
Q 015866 382 VSFGEYIICAFHLI 395 (399)
Q Consensus 382 vL~~f~~~~~~~~~ 395 (399)
||++||+ |.+|+-
T Consensus 211 vL~~fps-~~~p~~ 223 (458)
T 3qfs_A 211 ILQDCPS-LRPPID 223 (458)
T ss_dssp HHHHSTT-BCCCHH
T ss_pred HHHhCCc-cCCCHH
Confidence 9999887 566653
No 6
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.97 E-value=4.1e-30 Score=265.66 Aligned_cols=161 Identities=19% Similarity=0.335 Sum_probs=142.9
Q ss_pred Cccee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCC--CcEEEEeecCCC-
Q 015866 228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP--DALITVQHKEMK- 303 (399)
Q Consensus 228 ~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~--~~~v~i~~~~~~- 303 (399)
.++|. +|++|++||+.+++|+|+||+|++++++++|+|||||+|||.|+++.|+++|++||+++ +..|.++.....
T Consensus 112 ~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~~~~~ 191 (539)
T 2qtl_A 112 DPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKADTK 191 (539)
T ss_dssp -CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEEEECTTCC
T ss_pred CCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEEecccccc
Confidence 34555 99999999999999999999999998889999999999999999999999999999986 467887654321
Q ss_pred ---CCCCCcCCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHH
Q 015866 304 ---NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 380 (399)
Q Consensus 304 ---~~~p~~~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tll 380 (399)
..+| .+++.++|++++|++|+||++ +|+|+||+.||+||+|+.+|++|++|++++|+++|++|+.++++|++
T Consensus 192 ~~~~~~p----~~~p~~~tl~~~L~~~lDi~~-~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~~ll 266 (539)
T 2qtl_A 192 KKGATLP----QHIPAGCSLQFIFTWCLEIRA-IPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLL 266 (539)
T ss_dssp CTTCCCC----TTSCTTCBHHHHHHHTBCTTS-CCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTCCHH
T ss_pred CCCccCC----CCCCCcccHHHHHHHHhhhcC-CCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCCCHH
Confidence 1122 346689999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCcc
Q 015866 381 EVSFGEYIICAFHL 394 (399)
Q Consensus 381 dvL~~f~~~~~~~~ 394 (399)
|||++|++ |.+|+
T Consensus 267 dvL~~fps-~~~p~ 279 (539)
T 2qtl_A 267 DLLLAFPS-CQPPL 279 (539)
T ss_dssp HHHHHSTT-BCCCH
T ss_pred HHHHhCCC-cCCCH
Confidence 99999876 56665
No 7
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.97 E-value=3.5e-30 Score=232.50 Aligned_cols=147 Identities=31% Similarity=0.567 Sum_probs=132.6
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~ 84 (399)
.+++++|+|+|+||||+++|+.|++.|.+.|+++++++++++. .++..++.+||++||| +|++|+++..|+++|....
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~-~~l~~~d~vi~g~~Ty-~G~~p~~~~~fl~~L~~~~ 97 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-GNLPREGAVLIVTASY-NGHPPDNAKQFVDWLDQAS 97 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-TCCCSSSEEEEEECCB-TTBCCTTTHHHHHHHHTCC
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh-hhhhhCCeEEEEEeec-CCCcCHHHHHHHHHHHhcc
Confidence 4688999999999999999999999999999999999999863 4788899999999999 9999999999999997543
Q ss_pred CCccccCCceEEEEecCCCCch-hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHH
Q 015866 85 LSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y~-~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~ 157 (399)
...|+|++|+|||+||++|+ +||.+++.++++|+++|++++.+.+.+|.. .+.++++++|.+.||++|.
T Consensus 98 --~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~--~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 98 --ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADAS--DDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp --SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETT--SCHHHHHHHHHHHHHHHHH
T ss_pred --chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecC--CChHHHHHHHHHHHHHHhc
Confidence 22588999999999999995 999999999999999999999999999983 2367779999999999996
No 8
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.96 E-value=5.2e-30 Score=226.56 Aligned_cols=153 Identities=30% Similarity=0.474 Sum_probs=134.0
Q ss_pred cccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 3 EEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 3 ~~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+.++++++|+|+|+||||+++|+.|++.+.+.|++++++++++++..++.+++.|||++||||.|.+|+++..|+++|..
T Consensus 6 ~~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~ 85 (167)
T 1ykg_A 6 AAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFS 85 (167)
T ss_dssp ------CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTS
T ss_pred CCCCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHh
Confidence 44578999999999999999999999999999999999999998888888999999999999999999999999999965
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCC
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (399)
... ..+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|.. .++.+++|.+++++.|....+
T Consensus 86 ~~~--~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d~~----~~~~~~~w~~~l~~~l~~~~~ 158 (167)
T 1ykg_A 86 KKA--PKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVE----YQAAASEWRARVVDALKSRAP 158 (167)
T ss_dssp TTC--CCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECTT----CHHHHHHHHHHHHHHHHTCC-
T ss_pred ccc--cccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecCCC----cHHHHHHHHHHHHHHHHhhcC
Confidence 321 2488999999999999999999999999999999999999999999832 688999999999999976554
No 9
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.96 E-value=4.8e-29 Score=248.87 Aligned_cols=149 Identities=19% Similarity=0.324 Sum_probs=130.7
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCC-CCCCCcCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK-NYLPDIHK 311 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~-~~~p~~~~ 311 (399)
+|++|++||+++++|+|+||+|+++ ++++|+|||||+|||.|+++.|+++|++||+++++.|.+...... ..+|
T Consensus 10 ~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~p---- 84 (393)
T 4dql_A 10 NVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLP---- 84 (393)
T ss_dssp EEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC-------------
T ss_pred EEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCccccCC----
Confidence 8999999999999999999999998 689999999999999999999999999999999999887543221 1234
Q ss_pred CCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhcccCCC
Q 015866 312 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGEYIICA 391 (399)
Q Consensus 312 ~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f~~~~~ 391 (399)
++.|+|++++|++ +||++ +|+|+||+.||+||+|+.+|++|++|++. ++|.+|+.++++|++|||++|++ |.
T Consensus 85 --~~~~~tl~~~l~~-~di~~-~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~fps-~~ 156 (393)
T 4dql_A 85 --LAKTVSVEELLQY-VELQD-PVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKYPA-CE 156 (393)
T ss_dssp ----CCEEHHHHTTS-BCSSS-BCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHCTT-CC
T ss_pred --CCCcEEHHHHHHh-ccccC-CCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhCCC-CC
Confidence 5589999999999 99999 99999999999999999999999999974 37999999999999999999887 66
Q ss_pred Ccc
Q 015866 392 FHL 394 (399)
Q Consensus 392 ~~~ 394 (399)
+|+
T Consensus 157 ~p~ 159 (393)
T 4dql_A 157 MKF 159 (393)
T ss_dssp CCH
T ss_pred CCH
Confidence 664
No 10
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.96 E-value=1e-29 Score=219.69 Aligned_cols=146 Identities=24% Similarity=0.309 Sum_probs=131.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|++++|+|+|+||||+++|+.|++.+.+.|++++++++. +..++.+++.+||++||||.|++|+++..|+++|....
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~- 77 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQK- 77 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHC-
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhc-
Confidence 468999999999999999999999999999998888765 35678889999999999999999999999999997631
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
+ .+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+.+|...+.+.++.+++|.++++++|
T Consensus 78 ~--~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 78 P--DLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp C--CTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred c--ccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 1 47899999999999999999999999999999999999999999998765567999999999999876
No 11
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.95 E-value=5.9e-28 Score=244.16 Aligned_cols=160 Identities=18% Similarity=0.274 Sum_probs=136.9
Q ss_pred cee-eeeeeeecCCCCCCceeEEEEEEecCC-CcccccCCEEEEccCCCHHHHHHHHHHcCC--CCCcEEEEeecCC---
Q 015866 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQDPAAVDTFIQRCNL--DPDALITVQHKEM--- 302 (399)
Q Consensus 230 ~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~-~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l--~~~~~v~i~~~~~--- 302 (399)
++. +|++|++||+.+++|+++||+|+++++ +++|+|||||+|||.|+++.|+++|++||+ ++++.|.++....
T Consensus 30 ~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~ 109 (435)
T 1f20_A 30 VSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNT 109 (435)
T ss_dssp CEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEEEESS
T ss_pred cEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEeccccccC
Confidence 455 999999999999999999999999864 799999999999999999999999999976 7789998864311
Q ss_pred -CCCCCCcC-CCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHH
Q 015866 303 -KNYLPDIH-KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 380 (399)
Q Consensus 303 -~~~~p~~~-~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tll 380 (399)
....+.|. ...+| ++|++++|++|+||++ +|+|+||+.||+||+|+.+|++|++|++ ++++|.+|+...+++++
T Consensus 110 ~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~i~ 185 (435)
T 1f20_A 110 ALGVISNWKDESRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMV 185 (435)
T ss_dssp STTCEEEEEECCSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHH
T ss_pred CCCccccccccCCCC-CccHHHHHHhceecCC-CCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccCCCHH
Confidence 00111122 12355 9999999999999999 9999999999999999999999999997 77899999999999999
Q ss_pred HHhhhcccCCCCcc
Q 015866 381 EVSFGEYIICAFHL 394 (399)
Q Consensus 381 dvL~~f~~~~~~~~ 394 (399)
|||++|++ |.+|+
T Consensus 186 ~vl~~fps-~~~p~ 198 (435)
T 1f20_A 186 EVLEEFPS-IQMPA 198 (435)
T ss_dssp HHHHHSTT-BCBCH
T ss_pred HHHHhCCc-CCCCH
Confidence 99999887 45554
No 12
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.95 E-value=5.9e-28 Score=208.58 Aligned_cols=144 Identities=24% Similarity=0.317 Sum_probs=129.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCC-CCCeEEEEeecCCC--CCCchhHHHHHHHHHh
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-EEDTVIFVVSTTGQ--GDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~-~~~~ii~~~sT~g~--G~~p~~~~~f~~~L~~ 82 (399)
|++++|+|+|+||||+++|+.|++.+.+.|++++++++++++..++. +++.+||++||||. |.+|++++.|+++|..
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~ 80 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR 80 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc
Confidence 47899999999999999999999999999999999999999888998 99999999999998 9999999999999864
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHH
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRR 155 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~ 155 (399)
. .+++++++|||+||++|++||.+++.+++.|+++|++++.+...++..-+. ..+.+++|.+++++.
T Consensus 81 ~-----~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 81 I-----GLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp T-----CCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHHHT
T ss_pred c-----CCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHHhh
Confidence 2 478999999999999999999999999999999999999988888765333 566777888777653
No 13
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.92 E-value=3.3e-25 Score=219.89 Aligned_cols=135 Identities=21% Similarity=0.308 Sum_probs=123.3
Q ss_pred Cccee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCHHHHHHHHHHcCCCCCcEEEEeecCCCCCC
Q 015866 228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 306 (399)
Q Consensus 228 ~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~ 306 (399)
.+++. +|++|++||+.+++|+|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|.+.
T Consensus 9 ~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~-------- 80 (374)
T 1ddg_A 9 DAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE-------- 80 (374)
T ss_dssp TBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET--------
T ss_pred CCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC--------
Confidence 33455 999999999999999999999999888999999999999999999999999999999999999883
Q ss_pred CCcCCCCCCCCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhcCcccHHHHHHHHhcCCCCHHHHhhhc
Q 015866 307 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVSFGE 386 (399)
Q Consensus 307 p~~~~~~~~~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~tlldvL~~f 386 (399)
+ .++|++++|++|+||+ +|+|+||+.||+||+|+. |.+|++ ++++|.+|+. +++++|||++|
T Consensus 81 ~--------~~~tl~~~l~~~~di~--~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~vl~~~ 142 (374)
T 1ddg_A 81 G--------KTLPLNEALQWHFELT--VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDMVRFS 142 (374)
T ss_dssp T--------EEEEHHHHHHHHBCCS--CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHHHHHS
T ss_pred C--------CCccHHHHHHhcccCC--CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHHHHHC
Confidence 1 6799999999999999 589999999999999974 888885 7788999987 59999999999
Q ss_pred cc
Q 015866 387 YI 388 (399)
Q Consensus 387 ~~ 388 (399)
++
T Consensus 143 p~ 144 (374)
T 1ddg_A 143 PA 144 (374)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 14
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.92 E-value=1.6e-25 Score=192.97 Aligned_cols=142 Identities=29% Similarity=0.348 Sum_probs=126.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCC-CCeEEEEeecCCCCC--CchhHHHHHHHHHhc
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE-EDTVIFVVSTTGQGD--TPDSMKVFWRFLLQK 83 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~-~~~ii~~~sT~g~G~--~p~~~~~f~~~L~~~ 83 (399)
|+++|+|+|+||||+++|+.|++.+.+.|++++++++++.++.++.+ ++.+||++||||.|. +|++++.|+++|...
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~ 80 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEET 80 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGS
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhc
Confidence 58999999999999999999999999899999999999988888988 999999999999999 999999999998643
Q ss_pred cCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHH
Q 015866 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~ 154 (399)
.++++++++||+|+++|++||.+.+.+++.|+.+|++++.+.+.+|..-+ +..+.+++|.+++++
T Consensus 81 -----~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 81 -----GAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPR-AARDDIVGWAHDVRG 145 (147)
T ss_dssp -----CCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGG-GGHHHHHHHHHHHHT
T ss_pred -----ccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCch-hHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988877775422 246678899888765
No 15
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.90 E-value=1.3e-24 Score=194.31 Aligned_cols=149 Identities=23% Similarity=0.293 Sum_probs=125.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCc--------hhHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP--------DSMKVFW 77 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p--------~~~~~f~ 77 (399)
|++++|+|+|+||||+++|+.|++.+... ++++++++++.++.++.+++.|||++|||+.|.+| ++++.|+
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~ 79 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE-VMAKPLNVNRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFL 79 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT-TBCCCEEGGGCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHG
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc-CceEEEEcccCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHH
Confidence 46899999999999999999999998754 67888999888777788899999999999889999 8999999
Q ss_pred HHHHhccCCccccCCceEEEEecCCCC-ch-hHHHHHHHHHHHHHhCCCeeeccc-------------------eee-cC
Q 015866 78 RFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GLG-DD 135 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~avfGlGds~-y~-~f~~~~k~l~~~L~~lGa~~~~~~-------------------~~~-D~ 135 (399)
++|... .++|+++++||+|++. |+ +||.+.+.++++|.++|++++.+. +.+ |.
T Consensus 80 ~~l~~~-----~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~d~ 154 (182)
T 2wc1_A 80 PRIADQ-----DFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQ 154 (182)
T ss_dssp GGGTTC-----CCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEEECT
T ss_pred HHhhhc-----cCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeeeccC
Confidence 888542 5889999999999997 86 799999999999999999998763 443 33
Q ss_pred CCC-CCcccchhhHHHHHHHHHHhhC
Q 015866 136 QHP-SGYEGALDPWMRSLWRRLHQID 160 (399)
Q Consensus 136 ~~~-~g~~~~~~~W~~~l~~~l~~~~ 160 (399)
.+. ...++.+++|.++|++.|...+
T Consensus 155 ~~~~~~~~~~~~~w~~~l~~~l~~~~ 180 (182)
T 2wc1_A 155 DNQAALTPERLKGWLSLIAADFGLVL 180 (182)
T ss_dssp TTCGGGHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCccccHHHHHHHHHHHHHHHhccc
Confidence 222 1247889999999999986543
No 16
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.89 E-value=7.3e-24 Score=189.10 Aligned_cols=145 Identities=22% Similarity=0.295 Sum_probs=123.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCc--------hhHHHHHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP--------DSMKVFWR 78 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p--------~~~~~f~~ 78 (399)
++++|+|+|+||||+++|+.|++.+.. ++.++++++++.+..++.+++.|||++|||+.|.+| ++++.|++
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~~~v~~~~~~~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~ 79 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-ETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLP 79 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-TTBCCCEEGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHH
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-CCceEEEEhhhCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHH
Confidence 579999999999999999999999865 566888999888777788999999999999889999 99999999
Q ss_pred HHHhccCCccccCCceEEEEecCCCC-ch-hHHHHHHHHHHHHHhCCCeeeccc-------------------ee-ecCC
Q 015866 79 FLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ 136 (399)
Q Consensus 79 ~L~~~~~~~~~l~~~~~avfGlGds~-y~-~f~~~~k~l~~~L~~lGa~~~~~~-------------------~~-~D~~ 136 (399)
+|... .++|+++++||+||+. |+ +||.+.+.+++.|.++|++++.+. +. +|..
T Consensus 80 ~l~~~-----~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl~~d~~ 154 (179)
T 1yob_A 80 KIEGL-----DFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLD 154 (179)
T ss_dssp HHTTC-----CCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSEEECTT
T ss_pred Hhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCceeccccCCC
Confidence 98542 4889999999999997 97 699999999999999999998653 33 3432
Q ss_pred CC-CCcccchhhHHHHHHHHHH
Q 015866 137 HP-SGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 137 ~~-~g~~~~~~~W~~~l~~~l~ 157 (399)
.. ...++.+++|.+++++.|.
T Consensus 155 ~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 155 NQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp TCGGGHHHHHHHHHHHHGGGGT
T ss_pred CCCcccHHHHHHHHHHHHHHHh
Confidence 11 2368889999999887663
No 17
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.89 E-value=5.3e-24 Score=187.12 Aligned_cols=139 Identities=22% Similarity=0.305 Sum_probs=115.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
|++++|+|+|+||||+++|+.|++.+ |. +++.++++++..++.+++.|||++||||.|.+|+++..|+++|...
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~~-- 74 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---GN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEAS-- 74 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---CS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCCTH--
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---CC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHhhh--
Confidence 46899999999999999999999998 55 8999999888888889999999999999999999999999887432
Q ss_pred CccccCCceEEEEecCCCC-ch-hHHHHHHHHHHHHHhCCCeeeccc-------------------ee-ecCCCC-CCcc
Q 015866 86 SKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQHP-SGYE 142 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~-y~-~f~~~~k~l~~~L~~lGa~~~~~~-------------------~~-~D~~~~-~g~~ 142 (399)
.+++++++|||+||+. |+ +||.+++.++++|++ ++++.+. +. .|...+ +..+
T Consensus 75 ---~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~ 149 (164)
T 2bmv_A 75 ---DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTD 149 (164)
T ss_dssp ---HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECTTTCGGGHH
T ss_pred ---hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCCCCccccCH
Confidence 4779999999999995 98 599999999999998 7777653 22 332211 1247
Q ss_pred cchhhHHHHHHHH
Q 015866 143 GALDPWMRSLWRR 155 (399)
Q Consensus 143 ~~~~~W~~~l~~~ 155 (399)
+.+++|.+++++.
T Consensus 150 ~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 150 ERISKWVEQVKGS 162 (164)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 7888999888654
No 18
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.88 E-value=9.1e-23 Score=180.91 Aligned_cols=142 Identities=25% Similarity=0.346 Sum_probs=119.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCCCCCCCeEEEEeecCCCCCC----chhHHHHH-HHHH
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCLPEEDTVIFVVSTTGQGDT----PDSMKVFW-RFLL 81 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~l~~~~~ii~~~sT~g~G~~----p~~~~~f~-~~L~ 81 (399)
+++|+|+|+||||+++|+.|++.+... .++++++++. +..++.+++.|||++||||.|.+ |+++..|+ ++|.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~--~~~~~~~~~~~~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~ 78 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK--ADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLP 78 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG--BCCCEEGGGCSCGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGG
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC--CcEEEehhhcCChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhcc
Confidence 589999999999999999999999764 5778888887 77788899999999999988999 99999999 8875
Q ss_pred hccCCccccCCceEEEEecCCCC-ch-hHHHHHHHHHHHHHhCCCeeeccc-------------------ee-ecCCC-C
Q 015866 82 QKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQH-P 138 (399)
Q Consensus 82 ~~~~~~~~l~~~~~avfGlGds~-y~-~f~~~~k~l~~~L~~lGa~~~~~~-------------------~~-~D~~~-~ 138 (399)
.. .++|++++|||+||+. |+ +||.+.+.+++.|+++|++++.+. +. .|..+ +
T Consensus 79 ~~-----~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~ 153 (173)
T 2fcr_A 79 EV-----DMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQ 153 (173)
T ss_dssp GC-----CCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEETTTCS
T ss_pred cc-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeeeeecCCCCc
Confidence 42 4789999999999998 85 899999999999999999998763 11 23221 1
Q ss_pred CCcccchhhHHHHHHHHH
Q 015866 139 SGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 139 ~g~~~~~~~W~~~l~~~l 156 (399)
+..++.++.|.+++.+.|
T Consensus 154 ~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 154 IPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 125788999999998776
No 19
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.88 E-value=1.5e-22 Score=178.51 Aligned_cols=143 Identities=23% Similarity=0.324 Sum_probs=121.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
|+++|+|+|+||||+++|+.|++.+.+. .++++++++++..++.+++.|||++|||+.|.+|++++.|+++|...
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~--- 76 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDV--- 76 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGC---
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEcccCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhc---
Confidence 6899999999999999999999999754 68999999988888989999999999999999999999999988542
Q ss_pred ccccCCceEEEEecCCC-Cch-hHHHHHHHHHHHHHhCCCeeeccc-------------------ee-ecCCC-CCCccc
Q 015866 87 KQWLEGVRYAVFGLGDS-GYQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQH-PSGYEG 143 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds-~y~-~f~~~~k~l~~~L~~lGa~~~~~~-------------------~~-~D~~~-~~g~~~ 143 (399)
.++|+++++||+|++ .|+ +||.+.+.+++.|.++|++++... +. .|... +...++
T Consensus 77 --~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~ 154 (169)
T 1obo_A 77 --DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDD 154 (169)
T ss_dssp --CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGGHHH
T ss_pred --CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCCCccccCHH
Confidence 578999999999998 588 799999999999999999988652 11 22211 122577
Q ss_pred chhhHHHHHHHHH
Q 015866 144 ALDPWMRSLWRRL 156 (399)
Q Consensus 144 ~~~~W~~~l~~~l 156 (399)
.+++|.+++++.|
T Consensus 155 ~~~~w~~~~~~~l 167 (169)
T 1obo_A 155 RIKSWVAQLKSEF 167 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8899999999877
No 20
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.87 E-value=9.6e-23 Score=179.69 Aligned_cols=144 Identities=24% Similarity=0.320 Sum_probs=122.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
|+++|+|+|+||||+++|+.|++.+... +.++++++++++..++.+++.|||++|||+.|.+|++++.|+++|...
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~--- 76 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSV--- 76 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGGS---
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhhh---
Confidence 5799999999999999999999999765 678999999888888889999999999999999999999999988542
Q ss_pred ccccCCceEEEEecCCCC-ch-hHHHHHHHHHHHHHhCCCeeeccc-------------------ee-ecCCCC-CCccc
Q 015866 87 KQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQHP-SGYEG 143 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~-y~-~f~~~~k~l~~~L~~lGa~~~~~~-------------------~~-~D~~~~-~g~~~ 143 (399)
.++|+++++||+|++. |+ +||.+.+.+++.|.++|++++... +. .|...+ ...++
T Consensus 77 --~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~~~~~~~~~ 154 (169)
T 1czn_A 77 --NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKN 154 (169)
T ss_dssp --CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGGHHH
T ss_pred --ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCCCccccCHH
Confidence 5789999999999995 87 799999999999999999988631 11 332211 22578
Q ss_pred chhhHHHHHHHHH
Q 015866 144 ALDPWMRSLWRRL 156 (399)
Q Consensus 144 ~~~~W~~~l~~~l 156 (399)
.+++|.+++++.|
T Consensus 155 ~~~~w~~~~~~~~ 167 (169)
T 1czn_A 155 RIKTWVSQLKSEF 167 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998766
No 21
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.87 E-value=9.4e-23 Score=181.22 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=120.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~ 86 (399)
|+++|+|+|+||||+++|+.|++.+... .+++.++++.+..++.+++.|||++|||+.|.+|+++..|+++|...
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~--~v~i~~~~~~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~--- 75 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD--VADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEI--- 75 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEEGGGCCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTTC---
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC--ceEEEEcccCChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhc---
Confidence 5799999999999999999999999754 58889998877777888999999999999999999999999998642
Q ss_pred ccccCCceEEEEecCCCC-ch-hHHHHHHHHHHHHHhCCCeeeccce--------------------e-ecCCCC-CCcc
Q 015866 87 KQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVERG--------------------L-GDDQHP-SGYE 142 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~-y~-~f~~~~k~l~~~L~~lGa~~~~~~~--------------------~-~D~~~~-~g~~ 142 (399)
.++|+++++||+||+. |+ +||.+.+.+++.|++.|++++.... . .|...+ ...+
T Consensus 76 --~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~~~~ 153 (175)
T 1ag9_A 76 --DFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTA 153 (175)
T ss_dssp --CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHHHHH
T ss_pred --ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCCCcccccH
Confidence 4789999999999985 74 8999999999999999999886421 1 232211 1146
Q ss_pred cchhhHHHHHHHHHH
Q 015866 143 GALDPWMRSLWRRLH 157 (399)
Q Consensus 143 ~~~~~W~~~l~~~l~ 157 (399)
+.+++|.++|++.|.
T Consensus 154 ~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 154 ERVEKWVKQISEELH 168 (175)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 778899999998874
No 22
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.87 E-value=7.5e-22 Score=168.13 Aligned_cols=134 Identities=21% Similarity=0.214 Sum_probs=112.3
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCch-hHHHHHHHHHhccCCc
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPD-SMKVFWRFLLQKSLSK 87 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~-~~~~f~~~L~~~~~~~ 87 (399)
|+|+|+|+||||+++|+.|++.+.+.|++++++++.+.++.++.+++.|||++|||+.|.+|+ +++.|+++|...
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~---- 76 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK---- 76 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG----
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh----
Confidence 589999999999999999999999999999999999998888899999999999999998887 899999998542
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHH
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l 152 (399)
++|+++++||+++.. +|.+.+.++++|+++|++++.+...++..-+... +.+++|.+++
T Consensus 77 --l~~k~~~~f~t~g~~---~~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 77 --ISGKKVALFGSYGWG---DGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp --CTTCEEEEEEEESSS---CSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHH
T ss_pred --cCCCEEEEEEecCCC---CChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHH
Confidence 789999999986543 3789999999999999999987777665422112 4444554443
No 23
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.81 E-value=3.5e-20 Score=162.49 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=115.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC----CCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l----~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
|+++|+|+|+||||+++|+.|++.+.+.|++++++++.+.+..++ .+++.|||++|||+ |.+|. ..|++.|..
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~~l~~ 77 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ-PSEAV--ATALSTIFA 77 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS-CCHHH--HHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC-CchhH--HHHHHHHHh
Confidence 579999999999999999999999999999999999998876654 46999999999996 77774 889998865
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhh
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (399)
. .++|+++++||+ |+|+|.+.+.+.+.|+++|++++.+...+...-+....+.+.+|.+.+.+.|...
T Consensus 78 ~-----~l~gk~v~~fgs----~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~~ 145 (161)
T 3hly_A 78 A-----AHNKQAIGLFDS----YGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTRA 145 (161)
T ss_dssp H-----CCTTSEEEEECC----CCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred h-----hhCCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4 378999999996 5566889999999999999999977655543322123556778888888877643
No 24
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.80 E-value=2.8e-20 Score=162.78 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=116.2
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCC----CCCCCeEEEEeecCCCCCCchhHHHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARC----LPEEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~----l~~~~~ii~~~sT~g~G~~p~~~~~f~~~ 79 (399)
++++++|+|+|+||||+++|+.|++.+.+.|++++++++.+. +.++ +.+++.|||++|||+ |.+| +..|++.
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p--~~~~l~~ 79 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA-SAAS--IQGALST 79 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT-SHHH--HHHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC-CCcc--HHHHHHH
Confidence 357899999999999999999999999999999999999987 6554 456899999999996 7766 4889998
Q ss_pred HHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHh
Q 015866 80 LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (399)
Q Consensus 80 L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~ 158 (399)
|... .++|+.+++||+ |+|+|.+.+.+.++|+++|++.+.+...+...-+....+.+.+|.+.|.+.+..
T Consensus 80 l~~~-----~~~~k~va~fgs----~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 80 ILGS-----VNEKQAVGIFET----GGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp HHHH-----CCTTSEEEEECC----SSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-----cccCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8654 368999999996 567788999999999999999998766655432222455677888888877754
No 25
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.80 E-value=2.2e-19 Score=152.00 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=111.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCch-hHHHHHHHHHhccCCc
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPD-SMKVFWRFLLQKSLSK 87 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~-~~~~f~~~L~~~~~~~ 87 (399)
++|+|+|+||||+++|+.|++.+.+.|++++++++++.+..++.+++.+||++|||+.|.+|+ +++.|++++..
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~----- 76 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP----- 76 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-----
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-----
Confidence 789999999999999999999999999999999999988778889999999999999888887 49999999853
Q ss_pred cccCCceEEEEecCCCCchh-HHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHH
Q 015866 88 QWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~-f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~ 153 (399)
.++|+++++||+ |++ ||.+.+.+++.|..+|++.+ +...++.. ++. .+.+++|.+++.
T Consensus 77 -~l~~k~~~~~~t----~g~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~-~~~-~~~~~~~~~~l~ 135 (137)
T 2fz5_A 77 -KLKGKKVGLFGS----YGWGSGEWMDAWKQRTEDTGATVI-GTAIVNEM-PDN-APECKELGEAAA 135 (137)
T ss_dssp -GCSSCEEEEEEE----ESSCCSHHHHHHHHHHHHTTCEEE-EEEEEESS-SSS-CTHHHHHHHHHH
T ss_pred -hcCCCEEEEEEe----cCCCCchHHHHHHHHHHHCCCEEc-CcEEEeeC-CCh-HHHHHHHHHHHh
Confidence 478999999997 433 68899999999999999998 55555443 222 556667766654
No 26
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.77 E-value=2.4e-19 Score=149.16 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=87.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCcc
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQ 88 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~ 88 (399)
++|+|+|+||||+++|+.|+ +. | + ++++ +.+ .++.+||++||||+|.+|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~--~---~i~~---~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~--------- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A--V---QIGE---DLV-IDEDFILITYTTGFGNVPERVLEFLER--------- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E--E---ECCT---TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH---------
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C--C---CcCc---ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH---------
Confidence 47999999999999999999 32 3 2 3332 334 589999999999999999999999965
Q ss_pred ccCCceEEEEecCCCCchh-HHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHH
Q 015866 89 WLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~-f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~ 153 (399)
+++++++|||+||++|++ ||.+++.++++|.. .... ..+...+....+.+++|.++++
T Consensus 59 -~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~~~---~~~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 -NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PIVS---KFELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp -HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEEE---EEETTCCHHHHHHHHHHHHHHT
T ss_pred -cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---ccEE---EEecCCCHHHHHHHHHHHHHhc
Confidence 357899999999999987 99999999999753 2221 2222111112455788988775
No 27
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.71 E-value=4.2e-18 Score=145.44 Aligned_cols=123 Identities=16% Similarity=0.195 Sum_probs=91.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
+|++.|+|+|+||||+.+|++|+..+ .+++.+ .+..++.+|+++||||.|++|+.+.+|++..
T Consensus 8 ~m~i~I~Y~S~TGNt~~vA~~l~~~~--------~~~i~~----~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~~----- 70 (139)
T 1rlj_A 8 NAMVQIIFDSKTGNVQRFVNKTGFQQ--------IRKVDE----MDHVDTPFVLVTYTTNFGQVPASTQSFLEKY----- 70 (139)
T ss_dssp HSCCEEEECCSSSHHHHHHTTSCCSE--------EEETTS----CSCCCSCEEEEECCBGGGBCCHHHHHHHHHH-----
T ss_pred CCEEEEEEECCChhHHHHHHHhcccc--------ceEecc----ccccCCCEEEEEcCcCCCcCcHHHHHHHHhC-----
Confidence 46789999999999999999997421 234433 3556788999999999999999999998531
Q ss_pred CccccCCceEEEEecCCCCch-hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~-~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
+++.++|+|+||++|+ .||.+++.+++++ |...+. ..+.+ ..+ ...+.+.+|.+++|..-
T Consensus 71 -----~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~-~~el~-g~~-~D~~~~~~~~~~~~~~~ 131 (139)
T 1rlj_A 71 -----AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILH-KFELS-GTS-KDVELFTQEVERVVTKS 131 (139)
T ss_dssp -----GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEE-EEETT-CCH-HHHHHHHHHHHHHHHHH
T ss_pred -----CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcc-eEEEc-CCH-HHHHHHHHHHHHHHHHh
Confidence 3478999999999995 7999999998776 444432 22222 111 13567889999888643
No 28
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.60 E-value=2.5e-15 Score=149.58 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=117.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC----CCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC----LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~----l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
+++++|+|+|+||||+++|+.|++.+.+.|+.++++++.+.+..+ +.+++.+||++||||.|.+| .++.|++++.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l~~l~ 330 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILP-YVAGTLQYIK 330 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCH-HHHHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCCCchH-HHHHHHHHhh
Confidence 689999999999999999999999999899999999999877554 36899999999999877766 6999999986
Q ss_pred hccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHh
Q 015866 82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (399)
Q Consensus 82 ~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~ 158 (399)
.. .++|+.+++||+ |+++|.+.+.+.+.|..+|++.+.+...++..-+......+.+|.+++.+.+.+
T Consensus 331 ~~-----~l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 331 GL-----RPQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp HT-----CCCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-----ccCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 53 378999999996 667899999999999999999987555555432212345667788777776643
No 29
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.60 E-value=1.8e-15 Score=151.42 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=98.0
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-------CCCCCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-------RCLPEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~-------~~l~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
.+.+|+|+|+|+||||+++|+.|++.+.+.|+++.++.+.+.+. +++.+++.+||++|||+ |++++.+..|+
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~-~~~~p~~~~~l 342 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE-AEIHPLMRFTL 342 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT-SSSCHHHHHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC-CcCCHHHHHHH
Confidence 35689999999999999999999999999999887666554432 24678999999999996 45555799999
Q ss_pred HHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
..|... .++|+.+++||+ |+|.+.+.+.+.++|+++|++.+.+..
T Consensus 343 ~~l~~~-----~~~~K~~~~FGS----yGWsg~a~~~~~~~l~~~~~~~v~~~~ 387 (410)
T 4dik_A 343 LEIIDK-----ANYEKPVLVFGV----HGWAPSAERTAGELLKETKFRILSFTE 387 (410)
T ss_dssp HHHHHH-----CCCCCEEEEEEE----CCCCCTTSCCHHHHHTTSSCEEEEEEE
T ss_pred HHHHhc-----ccCCCEEEEEEC----CCCCcHHHHHHHHHHHHCCCEEECcEE
Confidence 998765 368999999996 888899999999999999999875543
No 30
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.59 E-value=1.5e-15 Score=151.07 Aligned_cols=141 Identities=16% Similarity=0.046 Sum_probs=112.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC----CCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l----~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
+++++|+|+|+||||+++|+.|++.+.+.|++++++++.+.+..++ .+++.+||++|||+.|.+| .++.|+++|.
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l~~l~ 329 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILP-VVSPLLDDLV 329 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBTTBCCG-GGHHHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCccchH-HHHHHHHHHh
Confidence 5889999999999999999999999998999999999987765443 5789999999999877777 5999999986
Q ss_pred hccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccc-eeecCCCCCCcccchhhHHHHHHHHH
Q 015866 82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER-GLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 82 ~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~-~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
.. .++|+.+++||+ |+++|.+.+.+++.|..+|++.+.+. ..++...+....+.+++|.+++.+.+
T Consensus 330 ~~-----~~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~ 396 (398)
T 1ycg_A 330 GL-----RPKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARI 396 (398)
T ss_dssp HH-----CCSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred cc-----ccCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCceEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 53 378999999996 67789999999999999999998765 55543322113345556666555443
No 31
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.58 E-value=7e-15 Score=132.28 Aligned_cols=123 Identities=22% Similarity=0.142 Sum_probs=101.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-------------------CcCCCCCCCeEEEEeecCCC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-------------------DARCLPEEDTVIFVVSTTGQ 66 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-------------------~~~~l~~~~~ii~~~sT~g~ 66 (399)
|++++|+|+|.+|||+++|+.|++.+.+.|++++++++.+. ..+++.++|.|||++|+| .
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~ 83 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR-F 83 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB-T
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh-c
Confidence 57999999999999999999999999999999999999873 233456899999999999 5
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccc
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~ 130 (399)
|.+|..++.|++++.... ....++|+++++|+++...++.++.+.+.+...|..+|+..+.+.
T Consensus 84 ~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 146 (200)
T 2a5l_A 84 GNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIP 146 (200)
T ss_dssp TBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCC
T ss_pred cCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCC
Confidence 788889999999985421 112478999999998766655567788999999999999887543
No 32
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.57 E-value=5.9e-15 Score=132.11 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=114.6
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHh-cCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~-~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+.|++++|+|+|.||||+++|+.|++.+.+ .|++++++++.+.+..++.+++.|||++||| .|.+|..++.|++++..
T Consensus 2 ~~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y-~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 2 NAMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTN-MGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp CCCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHTGG
T ss_pred CCCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCcc-CCcCCHHHHHHHHHHhh
Confidence 457899999999999999999999999998 8999999999998877888899999999999 88999999999999854
Q ss_pred ccCCccccCCceEEEEec-CCCCchhHHHHHHHHHHHHHhCCCeeecc------cee-----ecCCCCC--CcccchhhH
Q 015866 83 KSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVE------RGL-----GDDQHPS--GYEGALDPW 148 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~k~l~~~L~~lGa~~~~~------~~~-----~D~~~~~--g~~~~~~~W 148 (399)
... ..++|+++++||+ |... +.+..+.+.+...|..+|+..+.. ... .....++ ...+..+.|
T Consensus 81 ~~~--~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 157 (188)
T 2ark_A 81 DLW--GEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEKEACRRL 157 (188)
T ss_dssp GTT--TSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHHHHHHHH
T ss_pred hhH--HHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHHHHHHHH
Confidence 110 2478999999998 5432 224566777888888889876531 111 0011211 123456677
Q ss_pred HHHHHHHHHhh
Q 015866 149 MRSLWRRLHQI 159 (399)
Q Consensus 149 ~~~l~~~l~~~ 159 (399)
.+.+.+.+...
T Consensus 158 g~~la~~~~~~ 168 (188)
T 2ark_A 158 GRRLAEWVAIF 168 (188)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776544
No 33
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.54 E-value=8.8e-15 Score=145.68 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=113.2
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC----CCCCCCeEEEEeecCCCCCCchhHHHHHHH
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~----~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~ 79 (399)
+++++++|+|+|.||||+++|+.|++.+.+.|++++++++.+.+.. ++.+++.|||++|||+. ..|..++.|+++
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~-~~~~~~k~~ld~ 332 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYD-EPYPSVGDLLMY 332 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETT-EECTHHHHHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccc-cchHHHHHHHHH
Confidence 4578999999999999999999999999988999999999987754 56789999999999964 555579999999
Q ss_pred HHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 80 LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 80 L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
+...... . ++|+++++||+|... +.+.+.+.+.|..+|++.+.+ ..+....+....+.+++|.+++.+.+
T Consensus 333 l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
T 2ohh_A 333 LRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACE-EEVYYVPTGDELDACFEAGRKLAAEI 402 (404)
T ss_dssp HHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEE-EEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeE-EEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 9754322 2 689999999986443 567889999999999999876 43333211113455667777666544
No 34
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.54 E-value=1.2e-14 Score=124.47 Aligned_cols=126 Identities=14% Similarity=0.238 Sum_probs=87.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCC----CCCCchhHHHHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTG----QGDTPDSMKVFWRFLL 81 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g----~G~~p~~~~~f~~~L~ 81 (399)
+|..+|+|+|.||||++++++|.. +..-+++.+ ...+...+.+|+++|||| .|+.|+.+.+|++.+.
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~-------~~~~I~~~~--~~~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~ 90 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGL-------PAVRIPLNE--RERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH 90 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCS-------CCEECCSST--TCCCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCC-------ccccccccc--CcccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc
Confidence 455688899999999999999843 222223332 234556779999999998 5999999999997653
Q ss_pred hccCCccccCCceEEEEecCCCCc-hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHH
Q 015866 82 QKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154 (399)
Q Consensus 82 ~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~ 154 (399)
+ .++.++|+|+||++| ..||.+++.+.+.+.. ..+ ...+-.......+.+.+|.+++|+
T Consensus 91 n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~v---P~l---~kfEL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 91 N--------RALLRGVIASGNRNFGEAYGRAGDVIARKCGV---PWL---YRFELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp H--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEE---EEEETTCCHHHHHHHHHHHHHHHH
T ss_pred c--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhCC---CeE---EEEeCCCCHHHHHHHHHHHHHHHh
Confidence 2 356899999999999 5899999999988863 222 233332111124455666666665
No 35
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.52 E-value=4.3e-14 Score=126.91 Aligned_cols=121 Identities=23% Similarity=0.243 Sum_probs=98.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-cCCCcEEEeCCCC-------------------CcCCCCCCCeEEEEeecCC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDY-------------------DARCLPEEDTVIFVVSTTG 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~-~g~~~~v~~l~~~-------------------~~~~l~~~~~ii~~~sT~g 65 (399)
||+|+|+|+|.+|||+++|+.|++.+.+ .|++++++++.+. ...++..+|.|||++|||
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y- 79 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTR- 79 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEE-
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChh-
Confidence 4789999999999999999999999998 8999999999763 144677899999999999
Q ss_pred CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 66 ~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.|.+|..++.|++++.... ....++|+++++|+++... +....+.+.+...|..+|+..+.+
T Consensus 80 ~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~ 141 (198)
T 3b6i_A 80 FGNMSGQMRTFLDQTGGLW-ASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPI 141 (198)
T ss_dssp TTEECHHHHHHHTTCHHHH-HHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCC
T ss_pred cCCchHHHHHHHHHhhhhh-hhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECC
Confidence 8888999999999875421 1124789999999986544 345567788888999999988753
No 36
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.51 E-value=3e-14 Score=142.53 Aligned_cols=143 Identities=16% Similarity=0.063 Sum_probs=111.8
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC----CCCCCCeEEEEeecCCCCCCchhHHHHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~----~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L 80 (399)
.+++++|+|+|.||||+++|+.|++.+.+.|++++++++.+.++. ++.+++.|||++|||+. .+|..++.|++++
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~-~~~~~~k~fld~l 333 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNN-TMMPSVAAALNYV 333 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTT-BCCHHHHHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCc-CchHHHHHHHHHH
Confidence 368999999999999999999999999999999999999887754 56789999999999955 4555699999998
Q ss_pred HhccCCcccc-CCceEEEEecCCCCchhHHHHHHHHHHHHHh-CCCeeeccc-eeecCCCCCCcccchhhHHHHHHHHHH
Q 015866 81 LQKSLSKQWL-EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD-LGATAVVER-GLGDDQHPSGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 81 ~~~~~~~~~l-~~~~~avfGlGds~y~~f~~~~k~l~~~L~~-lGa~~~~~~-~~~D~~~~~g~~~~~~~W~~~l~~~l~ 157 (399)
... .+ +|+++++||+|... +.+.+.+.+.|.. +|++.+.+. ..+...-+....+.+.+|.+++.+.+.
T Consensus 334 ~~~-----~~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~ 404 (414)
T 2q9u_A 334 RGL-----TLIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGKRAI 404 (414)
T ss_dssp HHH-----TTTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhh-----cccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 653 35 79999999986432 5578899999999 999988754 333322111134556677777766554
No 37
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.48 E-value=5.5e-14 Score=127.84 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=100.4
Q ss_pred CccccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC--------------------Cc-----CCCCCCC
Q 015866 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--------------------DA-----RCLPEED 55 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~--------------------~~-----~~l~~~~ 55 (399)
|.-..+|+|+|+|+|.+|||+++|+.|++.+.+.|.+++++++.+. +. +++..+|
T Consensus 1 ~~~~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD 80 (211)
T 1ydg_A 1 MSLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAE 80 (211)
T ss_dssp ----CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCS
T ss_pred CCcCCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCC
Confidence 5555688999999999999999999999999999999999999774 21 2345789
Q ss_pred eEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 56 ~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.|||++|+| .|.+|..++.|++++...- ....++|+++++|+++...++....+...+...|..+|+..+..
T Consensus 81 ~ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 81 AIVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 999999999 6888889999999875321 11247899999999865544434678889999999999988754
No 38
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.48 E-value=1.1e-14 Score=130.95 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=93.6
Q ss_pred CccccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC---CCc---CCCCCCCeEEEEeecCCCCCCchhHH
Q 015866 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD---YDA---RCLPEEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~---~~~---~~l~~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
|.+.++++|+|+|+|.||||+++|+.|++.+.+.+ +++.+ +.. +++..+|.|||++||| .|.+|..++
T Consensus 1 ~~~~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~-----~~v~~~~~~~~~~~~~l~~~D~ii~gsP~y-~g~~~~~~k 74 (193)
T 3d7n_A 1 MTTNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATL-----HAIDAEGNLSEDGWAALDAADAIIFGTPTY-MGGPSWQFK 74 (193)
T ss_dssp -----CCCEEEEECCSSSHHHHHHHHHHHHHTCEE-----EECCTTSCCCHHHHHHHHHCSEEEEEEEEE-TTEECHHHH
T ss_pred CCCCCCCEEEEEEECCChHHHHHHHHHHHHhhhcc-----eEeeecCCCCHhHHHHHHHCCEEEEEeCcc-CCCccHHHH
Confidence 67788999999999999999999999999997644 34433 221 3566899999999999 588899999
Q ss_pred HHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 75 ~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.|++++...- ....++|+++++|+++.+.++.+..+...+...|..+|+..+.
T Consensus 75 ~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg 127 (193)
T 3d7n_A 75 KFADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVS 127 (193)
T ss_dssp HHHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 9999985311 0124789999999998776766778899999999999988753
No 39
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.47 E-value=6.4e-14 Score=126.04 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=98.4
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-----------------C---cCCCCCCCeEEEEeecC
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-----------------D---ARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-----------------~---~~~l~~~~~ii~~~sT~ 64 (399)
.+|+|+|+|+| +|||+++|+.|++.+.+.|.+++++++.+. . .+++..+|.|||++|+|
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y 81 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTR 81 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECB
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCcc
Confidence 46899999999 999999999999999989999999999875 1 22355789999999999
Q ss_pred CCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 65 g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.|.+|..++.|++++...- ....++|+++++|+.+...++....+.+.+...|..+|+..+..
T Consensus 82 -~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 82 -YGNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp -TTBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred -ccCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 6888889999999975321 11248899999999765544334567888999999999988754
No 40
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.47 E-value=3e-13 Score=119.40 Aligned_cols=125 Identities=20% Similarity=0.219 Sum_probs=91.4
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC---C-----------------------------cCCCC
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---D-----------------------------ARCLP 52 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~---~-----------------------------~~~l~ 52 (399)
.+|+++|+|.|.||||+++|+.|++.+. ++++++... + ..++.
T Consensus 12 ~~mkilIvY~S~tGnT~~vA~~Ia~~l~-----~d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 12 SNSKILVAYFSATGTTARAAEKLGAAVG-----GDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHT-----CEEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhC-----CCeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 4688999999999999999999999984 244444321 1 13567
Q ss_pred CCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 53 EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 53 ~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
.++.|||++||| .|.+|..+..|++.+ .++|+++++|+++... .++.+.+.+.+.|. |+.. .+...
T Consensus 87 ~yD~iilg~Pvy-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~--~~g~a~~~l~~~l~--~~~~-~~g~~ 152 (171)
T 4ici_A 87 TYDVVFIGYPIW-WDLAPRIINTFIEGH--------SLKGKTVVPFATSGGS--SIGNSATVLKKTYP--DLNW-KEGRL 152 (171)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHHS--------CCTTSEEEEEEECSSC--CSHHHHHHHHHHST--TSEE-CCCEE
T ss_pred HCCEEEEecccc-cCCchHHHHHHHHHc--------CCCcCEEEEEEecCCC--CcchHHHHHHHHcC--CCee-ccCeE
Confidence 899999999999 578888899998775 3789999999974211 24567788888776 4554 34444
Q ss_pred ecCCCCCCcccchhhHHHHH
Q 015866 133 GDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 133 ~D~~~~~g~~~~~~~W~~~l 152 (399)
++.. .+..+..|++++
T Consensus 153 ~~~~----~~~~i~~Wl~~~ 168 (171)
T 4ici_A 153 LNRT----DEKAIRAWLDVI 168 (171)
T ss_dssp CSSC----CHHHHHHHHHHH
T ss_pred ecCC----CHHHHHHHHHHh
Confidence 4432 367799998875
No 41
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.45 E-value=5.2e-13 Score=116.74 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=90.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC---CC-----------------------------CcCCCCC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD---DY-----------------------------DARCLPE 53 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~---~~-----------------------------~~~~l~~ 53 (399)
+++++|+|.|.||||+++|+.|++.+.. +++.+. .+ ...++.+
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~-----~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~ 78 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGA-----DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEK 78 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTC-----EEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGG
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCC-----CeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhh
Confidence 5789999999999999999999998853 233221 11 1235678
Q ss_pred CCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEec-CCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 54 EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 54 ~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
++.|||++||| .|.+|..+..|++.+ .++|+++++|++ |.+.+ ..+.+.+.+.|. |++.+ +...
T Consensus 79 yd~iilG~P~~-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~-~g~~ 143 (162)
T 3klb_A 79 YEVLFVGFPVW-WYIAPTIINTFLESY--------DFAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWK-DGKL 143 (162)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHTS--------CCTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEEC-CCEE
T ss_pred CCEEEEEcccc-cCCCCHHHHHHHHhc--------CCCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEee-cceE
Confidence 99999999999 688888899998764 478999999996 44443 466777777775 56654 4334
Q ss_pred ecCCCCCCcccchhhHHHHH
Q 015866 133 GDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 133 ~D~~~~~g~~~~~~~W~~~l 152 (399)
+... . -++.++.|.+++
T Consensus 144 ~~g~-~--~~~~v~~W~~~~ 160 (162)
T 3klb_A 144 LNGQ-I--TRDLVTEWFEKI 160 (162)
T ss_dssp CCSC-C--CHHHHHHHHHHT
T ss_pred EeCC-C--CHHHHHHHHHHh
Confidence 4332 2 477899998865
No 42
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.36 E-value=6.7e-13 Score=119.62 Aligned_cols=120 Identities=18% Similarity=0.118 Sum_probs=96.5
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHH-HHhcCCCcEEEeCCCCCc-----------------CCCCCCCeEEEEeecCC
Q 015866 6 RNKLLILYASQ--TGNALDAAERIGRE-SERRGCPVVVRPVDDYDA-----------------RCLPEEDTVIFVVSTTG 65 (399)
Q Consensus 6 ~~~v~IlY~S~--tG~te~~A~~l~~~-l~~~g~~~~v~~l~~~~~-----------------~~l~~~~~ii~~~sT~g 65 (399)
||+|+|+|||. +|||+++|+.+++. +.+.|.+++++++.+++. +++..+|.|||++|+|
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y- 80 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY- 80 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB-
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc-
Confidence 46899999997 89999999999999 998899999999987643 2356789999999999
Q ss_pred CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 66 ~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
+|..|..++.|++++.. ..++|+++++|+.|... +.+......+...|..+|+..+.+...
T Consensus 81 ~~~~p~~lK~~ld~l~~-----~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~~~v~ 141 (197)
T 2vzf_A 81 KASYTGLLKAFLDILPQ-----FALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVVQSFF 141 (197)
T ss_dssp TTBCCHHHHHHHTTSCT-----TTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEECCCEE
T ss_pred CCCCCHHHHHHHHhccc-----cccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEeccceEE
Confidence 67788889999998842 25889999999986543 333323246889999999998765433
No 43
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.32 E-value=5.1e-12 Score=109.07 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=77.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC-CCcEE----EeC-------------------CC--CCcCCCCCCCeEEE
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRG-CPVVV----RPV-------------------DD--YDARCLPEEDTVIF 59 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g-~~~~v----~~l-------------------~~--~~~~~l~~~~~ii~ 59 (399)
+++++|+|.|+||||+++|+.|++.+...+ +++++ ++. .+ ....++..++.|||
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~iil 82 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDLILI 82 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSEEEE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCEEEE
Confidence 358999999999999999999999885443 22221 110 00 11345678999999
Q ss_pred EeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHh
Q 015866 60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121 (399)
Q Consensus 60 ~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~ 121 (399)
++||| .|.+|..+..|++.+. .+.++.+++|++|.+.. ..+.+.+.+.+..
T Consensus 83 G~P~~-~g~~~~~~~~fl~~~~-------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~~ 133 (151)
T 3edo_A 83 GSPVW-SGYPATPIKTLLDQMK-------NYRGEVASFFTSAGTNH---KAYVSHFNEWADG 133 (151)
T ss_dssp EEEEE-TTEECTHHHHHHHHTT-------TCCSEEEEEEECSSCCH---HHHHHHHHHHTTT
T ss_pred Eccee-cccccHHHHHHHHhch-------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcCC
Confidence 99999 5888889999998863 35788999999876553 4566777777753
No 44
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.21 E-value=4.8e-11 Score=106.98 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCeEEEEEECCC---chHHHHHHHHHHHHHhcC--CCcEEEeCCCCCc--------------------------------
Q 015866 6 RNKLLILYASQT---GNALDAAERIGRESERRG--CPVVVRPVDDYDA-------------------------------- 48 (399)
Q Consensus 6 ~~~v~IlY~S~t---G~te~~A~~l~~~l~~~g--~~~~v~~l~~~~~-------------------------------- 48 (399)
||+|+|+|+|.. |||+++|+.+.+.+.+.| .+++++++.+.+.
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 478999999998 999999999999999876 8899999987532
Q ss_pred -CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC--------CccccCCceEEEEecCCCCchh--HHHHHHHHHH
Q 015866 49 -RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQK--FNFVAKKLDN 117 (399)
Q Consensus 49 -~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~--------~~~~l~~~~~avfGlGds~y~~--f~~~~k~l~~ 117 (399)
+++..+|.|||++|+| ++.+|..++.|++++..... +...++|+++++|+.+...|+. |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 1345789999999999 67888889999999863210 1134889999999976555543 5557778888
Q ss_pred HHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 118 RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 118 ~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
.|..+|++.+... ....... .++..++|.++.-+.+
T Consensus 160 ~l~~~G~~~~~~~-~~~~~~~--~~~~~~~~l~~a~~~~ 195 (201)
T 1t5b_A 160 FLGFIGITDVNFV-FAEGIAY--GPEVAAKAQADAKAAI 195 (201)
T ss_dssp HHHHTTCCCEEEE-EECCGGG--CHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEE-EEecccC--ChHHHHHHHHHHHHHH
Confidence 9999999877433 2221111 1334467776655544
No 45
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.18 E-value=5.4e-11 Score=106.52 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=94.2
Q ss_pred CccccCCeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCCc------------------CCCCCCCeEEEE
Q 015866 1 MREEKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA------------------RCLPEEDTVIFV 60 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~------------------~~l~~~~~ii~~ 60 (399)
|.-+.+|+|+|+|||.. |||+++|+.+++.+. .|.+++++++.++.. +++..+|.|||+
T Consensus 1 m~m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~ 79 (193)
T 1rtt_A 1 MSLSDDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFA 79 (193)
T ss_dssp ------CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCCCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEE
Confidence 43345679999999985 999999999999988 788899999887432 134578999999
Q ss_pred eecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 61 VSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 61 ~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+|+| +|..|..++.|++++.... . ..++|+++++|+.+...++ ...+...+...|..+|++.+.
T Consensus 80 sP~y-~~~~p~~lK~~iD~~~~~~-~-~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 80 TPEY-NYSMAGVLKNAIDWASRPP-E-QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp CCEE-TTEECHHHHHHHHHHTCSS-S-CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred cccc-ccCcCHHHHHHHHHhcccc-C-cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 9999 6677888999999985421 1 2588999999998643333 345778899999999998876
No 46
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.12 E-value=6.3e-11 Score=104.37 Aligned_cols=113 Identities=11% Similarity=0.135 Sum_probs=87.5
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-------------------CCCCCCeEEEEeecCC
Q 015866 7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR-------------------CLPEEDTVIFVVSTTG 65 (399)
Q Consensus 7 ~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-------------------~l~~~~~ii~~~sT~g 65 (399)
|+|+|+|||.+ |+|+++|+.+++.+.. +++++.+++.. ++..+|.|||++|+|
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-----~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~y- 74 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-----DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEY- 74 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-----EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEECS-
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-----eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCCc-
Confidence 57999999999 9999999999998753 55666555431 345789999999999
Q ss_pred CCCCchhHHHHHHHHHhccCCccccCCceEEEEec-CCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 66 ~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
+|..|..++.|++|+... .++|+.+++|+. |.. ..+..+...+...|..+|+..+-+...
T Consensus 75 ~~~~p~~lk~~lD~l~~~-----~~~gK~~~~~~~sgg~--~g~~~a~~~l~~~l~~~g~~~v~~~v~ 135 (174)
T 3gfs_A 75 HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGG--DGGINALNNMRTVMRGVYANVIPKQLV 135 (174)
T ss_dssp SSSCCHHHHHHHHTCCHH-----HHTTCEEEEEEECCST--TCSHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhCHh-----hhCCCcEEEEEECCCC--hhHHHHHHHHHHHHHHcCCEEecceEE
Confidence 788888999999998542 578999999994 322 124677889999999999998754333
No 47
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.10 E-value=2.2e-10 Score=106.42 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=110.1
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhc-CCCcEEEeCCCCCc---------------------CC-------CCCC
Q 015866 6 RNKLLILYASQT--GNALDAAERIGRESERR-GCPVVVRPVDDYDA---------------------RC-------LPEE 54 (399)
Q Consensus 6 ~~~v~IlY~S~t--G~te~~A~~l~~~l~~~-g~~~~v~~l~~~~~---------------------~~-------l~~~ 54 (399)
||+|+|+|||.. |+|+.+|+.+++.+.+. |.+++++++.+.++ .+ +..+
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~A 80 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLES 80 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHC
Confidence 478999999986 99999999999999988 99999999887532 11 3568
Q ss_pred CeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeec
Q 015866 55 DTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD 134 (399)
Q Consensus 55 ~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D 134 (399)
|.|||++|+| .|.+|..++.|++++.... ....++|+++++|+.+... ....+.+.+...|..+|+..+......+
T Consensus 81 D~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~~~ 156 (242)
T 1sqs_A 81 DIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSITN 156 (242)
T ss_dssp SEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEEEG
T ss_pred CEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEEec
Confidence 8999999999 7888889999999984321 1225889999999864221 1224667888999999999876544433
Q ss_pred CCCCCCcccchhhHHHHHHHHHHh
Q 015866 135 DQHPSGYEGALDPWMRSLWRRLHQ 158 (399)
Q Consensus 135 ~~~~~g~~~~~~~W~~~l~~~l~~ 158 (399)
...+ ...+.++++.+.+...+..
T Consensus 157 ~~~~-~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 157 SLKD-IAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp GGGG-GHHHHHHHHHHHHHHHHTT
T ss_pred cCCh-HHHHHHHHHHHHHHHHHhc
Confidence 3111 2456777788777777754
No 48
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.08 E-value=1e-09 Score=102.35 Aligned_cols=122 Identities=18% Similarity=0.098 Sum_probs=96.6
Q ss_pred cCCeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC---------------CCCCCCeEEEEeecCCCC
Q 015866 5 KRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR---------------CLPEEDTVIFVVSTTGQG 67 (399)
Q Consensus 5 ~~~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~---------------~l~~~~~ii~~~sT~g~G 67 (399)
.+++|+|+|||.. |+|+.+|+.+.+.+.+.|++++++++.+++.. .+...|.|||++|+| +|
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y-n~ 111 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER-HG 111 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-SS
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-CC
Confidence 5689999999985 99999999999999989999999999887521 234679999999999 78
Q ss_pred CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 68 ~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
.+|..++.|++|+.........++||.+++++.+-.. +. ..+...+...|..+|+..+-+
T Consensus 112 sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg-~~a~~~Lr~~l~~lg~~~v~~ 171 (247)
T 2q62_A 112 AMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QS-FNAVNQMRILGRWMRMITIPN 171 (247)
T ss_dssp SCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCEECSC
T ss_pred CccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cH-HHHHHHHHHHHHHCCCEEeCC
Confidence 8888999999998543111235899999999984222 21 145678888999999987733
No 49
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.06 E-value=2.3e-10 Score=102.09 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=91.4
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhc------CCCcEEEeCCCCCc-----------------------------C
Q 015866 7 NKLLILYASQT--GNALDAAERIGRESERR------GCPVVVRPVDDYDA-----------------------------R 49 (399)
Q Consensus 7 ~~v~IlY~S~t--G~te~~A~~l~~~l~~~------g~~~~v~~l~~~~~-----------------------------~ 49 (399)
|+|+|+|||.. |+|+++|+.+.+.+.+. |.+++++++.+.+. +
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 58999999998 99999999999999876 68888888765221 1
Q ss_pred CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 50 CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 50 ~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
++..+|.|||++|+| +|.+|..++.|++++.. .++|+++++|+.|... + ..+...+...|..+|++.+.
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~-~--~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHG-G--SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTT-T--HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcc-h--hhHHHHHHHHHHHCCCEEcc
Confidence 245789999999999 67788889999998742 4789999999987643 2 45678899999999998875
No 50
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.94 E-value=6.9e-09 Score=93.66 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=104.3
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhcC--CCcEEEeCC--CCCcC----------------------------
Q 015866 6 RNKLLILYASQT----GNALDAAERIGRESERRG--CPVVVRPVD--DYDAR---------------------------- 49 (399)
Q Consensus 6 ~~~v~IlY~S~t----G~te~~A~~l~~~l~~~g--~~~~v~~l~--~~~~~---------------------------- 49 (399)
||+|+|+|||.. |+|+.+|+.+.+.+++.| .+++++++. +.++.
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 478999999987 999999999999999887 889999998 64421
Q ss_pred ----------CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC--------CccccCCceEEEEecCCCCchhHHHH
Q 015866 50 ----------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQKFNFV 111 (399)
Q Consensus 50 ----------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~--------~~~~l~~~~~avfGlGds~y~~f~~~ 111 (399)
++...|.|||++|+| ++.+|..++.|++++..... +...++|++++++......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 244678999999999 78888899999999864210 12357899999987532334321334
Q ss_pred HHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 112 ~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
...+...|.-+|++.+......... . .++..++|.++.-+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~-~--~~~~~~~~l~~a~~~~ 201 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGID-H--FPDRAEELLNTAMTKA 201 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTT-T--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEcccc-C--CHHHHHHHHHHHHHHH
Confidence 5677788889999887543332222 1 2345667776554433
No 51
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.92 E-value=7.2e-09 Score=98.01 Aligned_cols=121 Identities=16% Similarity=0.086 Sum_probs=96.1
Q ss_pred cCCeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC----------------CCCCCCeEEEEeecCCC
Q 015866 5 KRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR----------------CLPEEDTVIFVVSTTGQ 66 (399)
Q Consensus 5 ~~~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~----------------~l~~~~~ii~~~sT~g~ 66 (399)
.+++|+|+|||.. |+|+.+|+.+++.+.+.|++++++++.++++. .+...|.|||++|+| +
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Y-n 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER-H 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE-T
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcc-c
Confidence 4689999999986 99999999999999989999999999887521 134679999999999 7
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
|.+|..++.|++|+.........++||.+++++.+-.. +.. .+...+...|..+|+..+-
T Consensus 136 ~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv~ 195 (279)
T 2fzv_A 136 GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTIP 195 (279)
T ss_dssp TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECS
T ss_pred cCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEeC
Confidence 88888999999998543111235899999999984222 222 4567888889999998773
No 52
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.85 E-value=5.3e-09 Score=92.26 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=84.0
Q ss_pred cCCeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCCc------------------------CCCCCCCeEE
Q 015866 5 KRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA------------------------RCLPEEDTVI 58 (399)
Q Consensus 5 ~~~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~------------------------~~l~~~~~ii 58 (399)
.+|+|+|+|+|.. |||+++|+.+++.+ +++++++.+.++ +++..+|.||
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 76 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-----DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILI 76 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT-----CCEEEEC-----------------------CHHHHHHHHHTCSEEE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC-----eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEE
Confidence 3579999999965 99999999998754 566677655432 1345889999
Q ss_pred EEeecCCCCCCchhHHHHHHHHHhccCC------ccccCCceEEEEecCCCCch-hHHHHHHHHHHHHHhCCCeeecc
Q 015866 59 FVVSTTGQGDTPDSMKVFWRFLLQKSLS------KQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 59 ~~~sT~g~G~~p~~~~~f~~~L~~~~~~------~~~l~~~~~avfGlGds~y~-~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
|++|+| +|.+|..++.|++++...... ...++|+++++|+.+..... .+..+.+.+...|..+|++.+..
T Consensus 77 ~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 77 FATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 999999 788888999999998642110 12478999999997543211 23446788888999999988743
No 53
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.84 E-value=2e-08 Score=89.90 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=95.1
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-----------------CCCCCCCeEEEEeecCCC
Q 015866 6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA-----------------RCLPEEDTVIFVVSTTGQ 66 (399)
Q Consensus 6 ~~~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~-----------------~~l~~~~~ii~~~sT~g~ 66 (399)
|++|+|++||. .|+|+++|+.+.+.+. .|.+++++++.+++. +.+...|.|||++|+| +
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y-~ 79 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY-N 79 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB-T
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc-c
Confidence 57999999998 7999999999999997 688899999877542 1245789999999999 7
Q ss_pred CCCchhHHHHHHHHHhccC-----CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceee
Q 015866 67 GDTPDSMKVFWRFLLQKSL-----SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG 133 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~-----~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~ 133 (399)
+..|..++.|++++..... ....++||++++++.+... .+..+...+...|..+|+..+-....+
T Consensus 80 ~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~~v~~ 149 (192)
T 3fvw_A 80 YAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQLTGV 149 (192)
T ss_dssp TBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEE
T ss_pred cCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecceeec
Confidence 8888899999999975311 1135899999999975442 123455778889999999987554433
No 54
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=98.32 E-value=4.2e-10 Score=101.59 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=96.1
Q ss_pred CccccCCeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEE-eCCCCC------------------cCCCCCCCeEEE
Q 015866 1 MREEKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVR-PVDDYD------------------ARCLPEEDTVIF 59 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~-~l~~~~------------------~~~l~~~~~ii~ 59 (399)
|.-..+|+|+|+|||.. |+|+++|+.+++.+.+ |++++++ ++.++. .+.+...|.|||
T Consensus 1 ~~~~~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi 79 (199)
T 3s2y_A 1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI 79 (199)
Confidence 34456689999999986 8999999999999987 8899988 886631 123567899999
Q ss_pred EeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 60 ~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
++|+| +|..|..++.|++|+..... ..++||.+++++.+...++ ...+...+...|..+|+..+-.
T Consensus 80 ~tP~Y-~~s~p~~lK~~iD~l~~~~~--~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~~ 145 (199)
T 3s2y_A 80 VTPEY-NYSVPGVLKNAIDWLSRVSP--QPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLNR 145 (199)
Confidence 99999 67888889999999965311 1588999999996433232 3456788888899999988754
No 55
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.81 E-value=7.7e-08 Score=87.74 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=112.3
Q ss_pred ccCCeEEEEEECC------CchHHHHHHHHHHHHHhcCCCcEEEeCCC-CCcC----CCCCCCeEEEEeecCCCCCCchh
Q 015866 4 EKRNKLLILYASQ------TGNALDAAERIGRESERRGCPVVVRPVDD-YDAR----CLPEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 4 ~~~~~v~IlY~S~------tG~te~~A~~l~~~l~~~g~~~~v~~l~~-~~~~----~l~~~~~ii~~~sT~g~G~~p~~ 72 (399)
..||+|+|++||. .+++..+++.+.+.+.+.|+++++.++++ +|+. .+...|.|||++|.| ++..|.-
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~p~~ 101 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAW-WMGEPWI 101 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHH
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEECChH-hccCCHH
Confidence 3578999999997 36899999999999999999999999974 3322 356789999999999 8888889
Q ss_pred HHHHHHHHHhccC-------------------CccccCCceEEEEecCCCCchhH-------HH-----HHHHHHHHHHh
Q 015866 73 MKVFWRFLLQKSL-------------------SKQWLEGVRYAVFGLGDSGYQKF-------NF-----VAKKLDNRLLD 121 (399)
Q Consensus 73 ~~~f~~~L~~~~~-------------------~~~~l~~~~~avfGlGds~y~~f-------~~-----~~k~l~~~L~~ 121 (399)
.+.|++++..... +...|+|+++.++-........| +. ...-+...|.-
T Consensus 102 lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f 181 (218)
T 3rpe_A 102 LKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQF 181 (218)
T ss_dssp HHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHHHHh
Confidence 9999999855421 12357899988877543332222 11 22235677888
Q ss_pred CCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCC
Q 015866 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (399)
Q Consensus 122 lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (399)
+|.+.+-+....+... ++.+++|.+++.+.|...++
T Consensus 182 ~G~~~l~~~~~~g~~~----~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 182 LGMKPLPTFMCNDVIK----QPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp TTCEECCCEEECSTTT----SCCHHHHHHHHHHHHHHHTC
T ss_pred CCCEEeceEEEeCCCC----hHHHHHHHHHHHHHHHHhcc
Confidence 9999886665555542 45889999988888876553
No 56
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.77 E-value=4.3e-08 Score=88.30 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=92.9
Q ss_pred CCeEEEEEEC--CCchHHHHHHHHHHHHHhcCCCcE-EEeCCCCCcC------------------CCCCCCeEEEEeecC
Q 015866 6 RNKLLILYAS--QTGNALDAAERIGRESERRGCPVV-VRPVDDYDAR------------------CLPEEDTVIFVVSTT 64 (399)
Q Consensus 6 ~~~v~IlY~S--~tG~te~~A~~l~~~l~~~g~~~~-v~~l~~~~~~------------------~l~~~~~ii~~~sT~ 64 (399)
.|+|++++|| ..|+|+.+|+.+.+.+. .|.+++ ++++.++..- .+...|.|||++|+|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y 84 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAP-EGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY 84 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCC-TTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHcc-CCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc
Confidence 4789999999 66999999999999885 577788 8887654320 145789999999999
Q ss_pred CCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 65 g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
++..|...+.|++|+... ....++||.+++++.+-..++.. .+...+...|..+|+..+-
T Consensus 85 -~~s~p~~LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 85 -NYSVPGVLKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp -TTBCCHHHHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred -CCCcCHHHHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 788888999999999652 23468999999999854444322 3567888899999998874
No 57
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.68 E-value=1e-07 Score=86.35 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=103.8
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhc--CCCcEEEeCCCCCc--------------------------------
Q 015866 6 RNKLLILYASQTG---NALDAAERIGRESERR--GCPVVVRPVDDYDA-------------------------------- 48 (399)
Q Consensus 6 ~~~v~IlY~S~tG---~te~~A~~l~~~l~~~--g~~~~v~~l~~~~~-------------------------------- 48 (399)
||+|+|+|||..+ +|..+|+.+.+.+++. |.+++++++.+.+.
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 5799999999765 6999999999999987 89999999865431
Q ss_pred --CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc---------CC---ccccCCceEEEEec-CC-CCch-----h
Q 015866 49 --RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS---------LS---KQWLEGVRYAVFGL-GD-SGYQ-----K 107 (399)
Q Consensus 49 --~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~---------~~---~~~l~~~~~avfGl-Gd-s~y~-----~ 107 (399)
+++...|.|||++|+| ++.+|..++.|++++.... -+ ...++|+++.++.. |. ..|+ .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 1134589999999999 7888889999999994321 11 33689999888875 43 2232 1
Q ss_pred HHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 108 FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 108 f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
+......+...|.-+|++.+. ......... .++..++|.++..+.+
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~-~v~~~g~~~--~~~~~~~~l~~a~~~~ 205 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVT-VVAAEGEES--GGRSFEDSCDEAEQRL 205 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEE-EEEECCTTT--CHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeE-EEEEecccC--CHHHHHHHHHHHHHHH
Confidence 233456778888889998874 333332221 2456667766655444
No 58
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.60 E-value=7.9e-07 Score=80.24 Aligned_cols=146 Identities=15% Similarity=0.121 Sum_probs=101.1
Q ss_pred CCeEEEEEECCC------chHHHHHHHHHHHHHhcCCCcEEEeCCC-CCcC----CCCCCCeEEEEeecCCCCCCchhHH
Q 015866 6 RNKLLILYASQT------GNALDAAERIGRESERRGCPVVVRPVDD-YDAR----CLPEEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 6 ~~~v~IlY~S~t------G~te~~A~~l~~~l~~~g~~~~v~~l~~-~~~~----~l~~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
..+|+|+.||-- ++|..+|+.+.+.+.+.|.+++++++.+ .+.. .+...|.|||++|.| ++.+|.-++
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y-~~s~pa~LK 90 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGW-WMGAPWTVK 90 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCcc-ccCCCHHHH
Confidence 468999999988 9999999999999998899999999975 2222 346789999999999 788888999
Q ss_pred HHHHHHHhcc-------------------CCccccCCceEEEEecCCCCchhH------------HHHHHHHHHHHHhCC
Q 015866 75 VFWRFLLQKS-------------------LSKQWLEGVRYAVFGLGDSGYQKF------------NFVAKKLDNRLLDLG 123 (399)
Q Consensus 75 ~f~~~L~~~~-------------------~~~~~l~~~~~avfGlGds~y~~f------------~~~~k~l~~~L~~lG 123 (399)
.|++++.... -+...++|++++++.........| ..+...+...|.-+|
T Consensus 91 ~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G 170 (204)
T 2amj_A 91 KYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLG 170 (204)
T ss_dssp HHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTT
T ss_pred HHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHHHHcC
Confidence 9999864321 022458899999988644432222 123334677888899
Q ss_pred CeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 124 ATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 124 a~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
++.+-+....+..... ..++|.++..+.+
T Consensus 171 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l 199 (204)
T 2amj_A 171 MEPLPTFIANDVIKMP----DVPRYTEEYRKHL 199 (204)
T ss_dssp CEECCCEEECSTTTSC----CTTTHHHHHHHHH
T ss_pred CeecceEEEeCCCCcH----HHHHHHHHHHHHH
Confidence 9987544443333211 4444544444433
No 59
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.59 E-value=1.7e-07 Score=84.01 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=107.3
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-------------------------CCCCCCeEEE
Q 015866 7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR-------------------------CLPEEDTVIF 59 (399)
Q Consensus 7 ~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-------------------------~l~~~~~ii~ 59 (399)
|+|+|++||.. ++|..+|+.+.+.+ +.|.+++++++.+..+. .+...|.|||
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~ 79 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIF 79 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEE
Confidence 68999999964 57899999999999 78999999999765421 1245899999
Q ss_pred EeecCCCCCCchhHHHHHHHHHhcc--------CCccccCCceEEEEecCCCC--chh--HHHHHHHHHHHHHhCCCeee
Q 015866 60 VVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSG--YQK--FNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 60 ~~sT~g~G~~p~~~~~f~~~L~~~~--------~~~~~l~~~~~avfGlGds~--y~~--f~~~~k~l~~~L~~lGa~~~ 127 (399)
++|.| ++.+|..++.|++++.... .+...|+||++.++..+... |.. +......+...|.-+|++.+
T Consensus 80 ~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~~ 158 (196)
T 3lcm_A 80 IFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISPV 158 (196)
T ss_dssp EEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCCE
T ss_pred ECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCcee
Confidence 99999 8888989999999985421 11236899999999875544 321 01112556667777899877
Q ss_pred ccceeecCCCCCCcccchhhHHHHHHHHHHhhC
Q 015866 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQID 160 (399)
Q Consensus 128 ~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~ 160 (399)
-.......... -++..++|.+++-+...+.+
T Consensus 159 ~~~~~~g~~~~--~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 159 KLTELTSIEKI--SDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp EEEEECSTTTS--CHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEeCcCCC--CHHHHHHHHHHHHHHHHHHH
Confidence 55444443321 46778899998877765543
No 60
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.59 E-value=2.4e-07 Score=87.49 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=102.2
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-----------------------------------
Q 015866 6 RNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA----------------------------------- 48 (399)
Q Consensus 6 ~~~v~IlY~S~t--G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~----------------------------------- 48 (399)
||+|+|+|||.. |+|..+|+.+.+.+.+.|.+|+++++.+..+
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLS 81 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCc
Confidence 579999999987 6899999999999999999999999976542
Q ss_pred CC-------CCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC--------CccccCCceEEEEecCCCC---chh--H
Q 015866 49 RC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSG---YQK--F 108 (399)
Q Consensus 49 ~~-------l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~--------~~~~l~~~~~avfGlGds~---y~~--f 108 (399)
.+ +...|.|||++|.| ++.+|..++.|++++..... +...++|+++.++...... |.+ .
T Consensus 82 dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~g~ 160 (273)
T 1d4a_A 82 PDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGI 160 (273)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBT
T ss_pred HHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccccc
Confidence 01 44678999999999 78888899999999854311 1346899999888853332 421 1
Q ss_pred ----HHHHHH-HHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHh
Q 015866 109 ----NFVAKK-LDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (399)
Q Consensus 109 ----~~~~k~-l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~ 158 (399)
...... +...|.-+|++.+-+........ . .++..+.|.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~l~~ 213 (273)
T 1d4a_A 161 HGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGH-T-PADARIQILEGWKKRLEN 213 (273)
T ss_dssp TCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGG-S-CHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCCCeeeeEEEEecccc-C-CHHHHHHHHHHHHHHHHH
Confidence 112222 22355678988774443332221 1 234566677666666644
No 61
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.55 E-value=1.5e-07 Score=84.26 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=93.1
Q ss_pred ccCCeEEEEEECCC--chHHHHHHHHHH----HHHhc--CCCcEEEeCCCCCcC-------------------CCCCCCe
Q 015866 4 EKRNKLLILYASQT--GNALDAAERIGR----ESERR--GCPVVVRPVDDYDAR-------------------CLPEEDT 56 (399)
Q Consensus 4 ~~~~~v~IlY~S~t--G~te~~A~~l~~----~l~~~--g~~~~v~~l~~~~~~-------------------~l~~~~~ 56 (399)
+-+.+|+++.||.. |+|..+|+.+.+ .+++. |.+++++++.++++. .+...|.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 45789999999975 899999999999 66666 778899998766421 1246799
Q ss_pred EEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceee
Q 015866 57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG 133 (399)
Q Consensus 57 ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~ 133 (399)
|||++|+| +|.+|..++.|++|+.. ..++||.+++++.|.. +.........+...|..+|+..+-+.+.+
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~~-----~~l~gK~~~~v~t~G~-~~~~~~~~~~L~~il~~lg~~vv~~~v~~ 158 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILDT-----DALTGMPTIIAATAGS-ARHSLVLDYALRPLLSYMRAVVVPTGVFA 158 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSCT-----TTTTTCEEEEEEEESS-STTTTHHHHTHHHHHHHTTCEECSCCEEE
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhhh-----hhcCCCEEEEEEeCCC-cchhhHHHHHHHHHHHHCCCEEcCcEEEe
Confidence 99999999 78888899999999853 3589999999998633 22222222348888999999987554443
No 62
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=98.51 E-value=3.5e-07 Score=81.88 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=102.2
Q ss_pred cCCeEEEEEECC--CchHHHHHHHHHHHHHhcCCCcE-EEeCCCCCc-------------------CCCCCCCeEEEEee
Q 015866 5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVV-VRPVDDYDA-------------------RCLPEEDTVIFVVS 62 (399)
Q Consensus 5 ~~~~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~-v~~l~~~~~-------------------~~l~~~~~ii~~~s 62 (399)
..|+|+++.||- .++|..+|+.+.+.+ +.|++++ ++++.++.. +.+...|.|||++|
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP 81 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTP 81 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEec
Confidence 458999999995 588999999886643 5688888 888876532 11346899999999
Q ss_pred cCCCCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec-cce-------eec
Q 015866 63 TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV-ERG-------LGD 134 (399)
Q Consensus 63 T~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~-~~~-------~~D 134 (399)
+| +|..|..++.|++|+... ....++||.+++++..-..++. ..+...+...|..+|+..+- |.. ..|
T Consensus 82 ~y-~~~~~~~lK~~iD~~~~~--~~~~~~gK~~~~~~~s~g~~gg-~~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~f~ 157 (193)
T 3svl_A 82 EY-NYSVPGGLKNAIDWLSRL--PDQPLAGKPVLIQTSSMGVIGG-ARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVD 157 (193)
T ss_dssp CB-TTBCCHHHHHHHHHHHTS--TTCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHTTCEECCSSCEEETTGGGGEE
T ss_pred cc-CCCCCHHHHHHHHHHhhc--CccccCCCeEEEEEeCCCCcch-HHHHHHHHHHHHHCCCEEcCCCeEeecchhhhcC
Confidence 99 788888999999999753 2346899999999962222222 24667888899999998773 112 223
Q ss_pred CCCCCCcccchhhHHHHHHHHHHhh
Q 015866 135 DQHPSGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 135 ~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (399)
+++..-.++...+..+.+.+.+...
T Consensus 158 ~~~g~l~d~~~~~~l~~~~~~~~~~ 182 (193)
T 3svl_A 158 PQTGEVIDQGTLDHLTGQLTAFGEF 182 (193)
T ss_dssp TTTTEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 2211102345556666666555443
No 63
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.49 E-value=2.9e-07 Score=82.33 Aligned_cols=153 Identities=11% Similarity=0.047 Sum_probs=103.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc----------CCCCCCCeEEEEeecCCCCCCchhHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------RCLPEEDTVIFVVSTTGQGDTPDSMKV 75 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~----------~~l~~~~~ii~~~sT~g~G~~p~~~~~ 75 (399)
||+|+|++||..++...+++.+.+.+++.|.+++++++.+..+ +.+...|.|||++|.| ++.+|.-++.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~ 79 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLLKQ 79 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHHHH
Confidence 5789999999998866899999999998899999998864322 1356899999999999 8888889999
Q ss_pred HHHHHHhccC----CccccCCceEEEEecCCCC---ch-------hHHHHHHHHHHHHHhCCCeeeccceeecCCCC---
Q 015866 76 FWRFLLQKSL----SKQWLEGVRYAVFGLGDSG---YQ-------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHP--- 138 (399)
Q Consensus 76 f~~~L~~~~~----~~~~l~~~~~avfGlGds~---y~-------~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~--- 138 (399)
|++++..... ....|+||++.++...... |. .......-+...+.-+|++.+-+....+....
T Consensus 80 ~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~~~ 159 (192)
T 3f2v_A 80 WLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNAGY 159 (192)
T ss_dssp HHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-------
T ss_pred HHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccccc
Confidence 9999854311 1246899999988853332 32 12233444677888899998765554443310
Q ss_pred -CCcccchhhHHHHHHHHHHhh
Q 015866 139 -SGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 139 -~g~~~~~~~W~~~l~~~l~~~ 159 (399)
.-.++.++...++..+.|...
T Consensus 160 ~~~~~~~~~~~~~~y~~~l~~~ 181 (192)
T 3f2v_A 160 SEAARQEVERSARDYLAWLDAL 181 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 001344555555544445443
No 64
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.47 E-value=5.7e-07 Score=81.58 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=105.2
Q ss_pred cCCeEEEEEECCC----chHHHHHHHHHHHHHhc--CCCcEEEeCCCCCcC-----------------------------
Q 015866 5 KRNKLLILYASQT----GNALDAAERIGRESERR--GCPVVVRPVDDYDAR----------------------------- 49 (399)
Q Consensus 5 ~~~~v~IlY~S~t----G~te~~A~~l~~~l~~~--g~~~~v~~l~~~~~~----------------------------- 49 (399)
-|++|+|++||-. ++|..+|+.+.+.+++. |.+++++|+.+.+.-
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAV 82 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHH
Confidence 3689999999955 88999999999999887 889999998654310
Q ss_pred ------CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC--------CccccCCceEEEEecCCCCchh-----HHH
Q 015866 50 ------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQK-----FNF 110 (399)
Q Consensus 50 ------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~--------~~~~l~~~~~avfGlGds~y~~-----f~~ 110 (399)
.+...|.|||++|.| ++..|...+.|++++..... +...++|+++.++......|.. +..
T Consensus 83 ~~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~ 161 (211)
T 3p0r_A 83 ADKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEM 161 (211)
T ss_dssp HHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCB
T ss_pred HHHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhH
Confidence 134678999999999 78888899999999854211 2335889998888852233432 233
Q ss_pred HHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHH
Q 015866 111 VAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 111 ~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~ 157 (399)
+...+...|.-+|++.+.......... ..+.-++|.++..+.+.
T Consensus 162 ~~~~l~~~l~~~G~~~v~~i~~~g~~~---~~~~~~~~l~~a~~~~~ 205 (211)
T 3p0r_A 162 AVKYVASMMGFFGATNMETVVIEGHNQ---FPDKAEEIITAGLEEAA 205 (211)
T ss_dssp SHHHHHHHHHHTTCCSCEEEEEECTTT---SGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeeeEEEEecccc---CchHHHHHHHHHHHHHH
Confidence 456778888899998764333222221 24467788877665543
No 65
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=98.47 E-value=5.4e-07 Score=82.80 Aligned_cols=152 Identities=22% Similarity=0.168 Sum_probs=106.3
Q ss_pred CCeEEEEEECCCc--hHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-----------------------------------
Q 015866 6 RNKLLILYASQTG--NALDAAERIGRESERRGCPVVVRPVDDYDA----------------------------------- 48 (399)
Q Consensus 6 ~~~v~IlY~S~tG--~te~~A~~l~~~l~~~g~~~~v~~l~~~~~----------------------------------- 48 (399)
.|+|+|++||... +|..+|+.+.+.+++.|++++++++.+.+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 80 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA 80 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCc
Confidence 4789999999764 599999999999998999999999976431
Q ss_pred CC-------CCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC--------CccccCCceEEEEec-CCC--Cchh--H
Q 015866 49 RC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGL-GDS--GYQK--F 108 (399)
Q Consensus 49 ~~-------l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~--------~~~~l~~~~~avfGl-Gds--~y~~--f 108 (399)
.+ +...|.|||++|.| ++.+|.-++.|++++..... +...|+||++.++.. |.. .|.. +
T Consensus 81 dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g~ 159 (228)
T 3tem_A 81 SDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGV 159 (228)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTST
T ss_pred HHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhccc
Confidence 00 24678999999999 88889899999999854311 124689999988875 332 2321 1
Q ss_pred HHHHHH----HH-HHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhC
Q 015866 109 NFVAKK----LD-NRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQID 160 (399)
Q Consensus 109 ~~~~k~----l~-~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~ 160 (399)
....+. +. ..+.-+|.+.+-+....+.... -++..++|.+++.+.|....
T Consensus 160 ~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~~ 214 (228)
T 3tem_A 160 NGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIA--SEEERKGMVAAWSQRLQTIW 214 (228)
T ss_dssp TCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTS--CHHHHHHHHHHHHHHHHTGG
T ss_pred cCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCC--CHHHHHHHHHHHHHHHHhhc
Confidence 111122 21 1333478887765555554432 46778899998888886544
No 66
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=98.39 E-value=3.5e-06 Score=75.17 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=88.0
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-----------------CCCCCCeEEEEeecCCC
Q 015866 6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR-----------------CLPEEDTVIFVVSTTGQ 66 (399)
Q Consensus 6 ~~~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-----------------~l~~~~~ii~~~sT~g~ 66 (399)
+++|.|+.||. ...++++|+.+++.+. .|++++++++.++..- .+...|.+||++|.| +
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY-n 79 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY-N 79 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB-T
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh-c
Confidence 35799999994 4568899999887664 5788888888765321 134789999999999 7
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
|..|...+.|++||.+. .+...+.||.++++|.+-...+. -.+...+...|..+|+..+-
T Consensus 80 ~s~pg~LKn~iDwlsr~-~~~~~~~gKpv~~v~~S~G~~Gg-~~a~~~Lr~vl~~lg~~v~~ 139 (190)
T 3u7r_A 80 RSYPGMIKNAIDWATRP-YGQNSWKGKPAAVIGTSPGVIGA-ALAQARLKNDLLHVGTVMMS 139 (190)
T ss_dssp TBCCHHHHHHHHHHHCS-TTCCTTTTCEEEEEEEESSTTTT-HHHHHHHHHHHHTTTCEECC
T ss_pred ccCCHHHHHHHHHhccc-ccCCccCCCEEEEEEeCCchhhH-HHHHHHHHHHHHHcCCEEcc
Confidence 88888999999999642 12346999999999863222322 23456677888999998763
No 67
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=98.38 E-value=4.5e-06 Score=76.34 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=104.8
Q ss_pred cccCCeEEEEEECC-----CchHHHHHHHHHHHHHhc--CC-CcEEEeCCCCCcC-------------------------
Q 015866 3 EEKRNKLLILYASQ-----TGNALDAAERIGRESERR--GC-PVVVRPVDDYDAR------------------------- 49 (399)
Q Consensus 3 ~~~~~~v~IlY~S~-----tG~te~~A~~l~~~l~~~--g~-~~~v~~l~~~~~~------------------------- 49 (399)
|+.||+|+|++||- .++|..+++.+.+.+++. |. +++++|+.+.+..
T Consensus 1 ~~~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (223)
T 3u7i_A 1 SNAMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQK 80 (223)
T ss_dssp --CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHH
T ss_pred CCccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHH
Confidence 45689999999995 589999999999999876 57 8999998754321
Q ss_pred ----------CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC--------Ccccc-CCceEEEEecCCCCch----
Q 015866 50 ----------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWL-EGVRYAVFGLGDSGYQ---- 106 (399)
Q Consensus 50 ----------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~--------~~~~l-~~~~~avfGlGds~y~---- 106 (399)
.+...|.|||++|.| ++..|...+.|++++..... +...+ +|+++.++......|+
T Consensus 81 ~~d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~ 159 (223)
T 3u7i_A 81 VTERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDW 159 (223)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSH
T ss_pred HHHHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCc
Confidence 113578999999999 78888899999999865321 11246 7899888875333342
Q ss_pred --hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 107 --KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 107 --~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
.+..+...+...|.-+|++.+.......... .+.++.++++.+++-+..
T Consensus 160 ~~~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~-~~~~~~~~~a~~~~~~~~ 210 (223)
T 3u7i_A 160 YTDVEYSHKYLKAMFNFLGIEDYQIVRAQGTAV-LDPTEVLQNAYKEVEEAA 210 (223)
T ss_dssp HHHTCHHHHHHHHHHHHHTCCEEEEEEECCTTT-SCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHCCCceeEEEEEcCccC-CCHHHHHHHHHHHHHHHH
Confidence 2334566788888889998874332222221 125666777766655444
No 68
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=97.94 E-value=0.0002 Score=67.50 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=103.7
Q ss_pred cCCeEEEEEECC--CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC---------------------------------
Q 015866 5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR--------------------------------- 49 (399)
Q Consensus 5 ~~~~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~--------------------------------- 49 (399)
+.|+|+|+||+- .+.+..+++.+.+.+++.|.+|++.||-+....
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQS 100 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCc
Confidence 468999999984 467899999999999999999999999543221
Q ss_pred --------CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhcc----------------CCccccCCceEEEEec-CCC-
Q 015866 50 --------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS----------------LSKQWLEGVRYAVFGL-GDS- 103 (399)
Q Consensus 50 --------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~----------------~~~~~l~~~~~avfGl-Gds- 103 (399)
.+...|.|||++|.| ++.+|.-++.|++.+.... .+...|+||++.++-. |..
T Consensus 101 ~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~~ 179 (280)
T 4gi5_A 101 ADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGWA 179 (280)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSCG
T ss_pred HHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCCh
Confidence 123478999999999 7888889999999985321 1234578998876654 422
Q ss_pred -Cchh--HHHHHHHHHHH-----HHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHHHhhCC
Q 015866 104 -GYQK--FNFVAKKLDNR-----LLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (399)
Q Consensus 104 -~y~~--f~~~~k~l~~~-----L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (399)
.|.. ++.....+-.. +.-+|.+.+-+....+...- .++.+++|.+++.+.|...+.
T Consensus 180 ~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~--~~~~~~~~~~~~~~~L~~l~~ 243 (280)
T 4gi5_A 180 EHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKT--DAGQFADQCAALAERLDTLWQ 243 (280)
T ss_dssp GGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGC--CHHHHHHHHHHHHHHHHTTTT
T ss_pred HHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCC--CHHHHHHHHHHHHHHHhhhhh
Confidence 2321 22212221111 12258887766665443321 467888999999888876543
No 69
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=97.90 E-value=6.1e-05 Score=66.25 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=98.5
Q ss_pred CeEEEEEECCC---chHHHHHHHHHHHHHhcCCCcEEEeCCC-CCc----CCCCCCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 7 NKLLILYASQT---GNALDAAERIGRESERRGCPVVVRPVDD-YDA----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 7 ~~v~IlY~S~t---G~te~~A~~l~~~l~~~g~~~~v~~l~~-~~~----~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
|+++|++||-. +.+.+++...++. ..++++.++.+ .|. +.+...|.|||++|.| ++.+|.-++.|++
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~----~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~~iD 75 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIEN----FSNVTWHPLVADFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQWMD 75 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTT----CTTEEEEECCTTCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhc----CCCEEEEECCCcccHHHHHHHHHhCCEEEEECChh-hccCCHHHHHHHH
Confidence 57999999975 5555555544443 34689999975 222 1356899999999999 8888889999999
Q ss_pred HHHhcc--C-CccccCCceEEEEecCCCC---ch-------hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccch
Q 015866 79 FLLQKS--L-SKQWLEGVRYAVFGLGDSG---YQ-------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL 145 (399)
Q Consensus 79 ~L~~~~--~-~~~~l~~~~~avfGlGds~---y~-------~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~ 145 (399)
++.... . ....|+||++.++...... |. .....-+-+...+.-+|.+.+-+....+...- -++..
T Consensus 76 rv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~--~~~~~ 153 (177)
T 3ha2_A 76 TVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYL--EPDAQ 153 (177)
T ss_dssp HHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGS--CHHHH
T ss_pred HHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCC--CHHHH
Confidence 974321 0 1246899999888753332 32 12334444566778899998755554433221 36788
Q ss_pred hhHHHHHHHHHHhh
Q 015866 146 DPWMRSLWRRLHQI 159 (399)
Q Consensus 146 ~~W~~~l~~~l~~~ 159 (399)
++|.++..+.|...
T Consensus 154 ~~~l~~~~~~l~~~ 167 (177)
T 3ha2_A 154 QRLLVAYQQYATNV 167 (177)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccc
Confidence 99999988888654
No 70
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.87 E-value=5.5e-05 Score=75.43 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=96.1
Q ss_pred CccccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc----------CCCCCCCeEEEEeecCCCCCCc
Q 015866 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------RCLPEEDTVIFVVSTTGQGDTP 70 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~----------~~l~~~~~ii~~~sT~g~G~~p 70 (399)
|+...+|+|+|++||-.+++..+.+.+.+.+.+ ...+++.++.+..+ +.+...|.|||++|.| ++..|
T Consensus 231 m~~~~~mkiLvi~gspr~~ss~~n~~l~~~~~~-~~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~P 308 (413)
T 3l9w_A 231 VPRGSSGMILIIYAHPYPHHSHANKRMLEQART-LEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIP 308 (413)
T ss_dssp ------CCEEEEECCSCGGGCSHHHHHHHHHHT-SSSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCC
T ss_pred CCCCCCCCEEEEEECCCcchHHHHHHHHHHHhc-CCCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCC
Confidence 444556899999999988876688888887765 35788887732211 1246889999999999 78888
Q ss_pred hhHHHHHHHHHhccC----CccccCCceEEEEec-CCCC--ch-----hHHHHHHHHHHHHHhCCCeeeccceeecCCCC
Q 015866 71 DSMKVFWRFLLQKSL----SKQWLEGVRYAVFGL-GDSG--YQ-----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 138 (399)
Q Consensus 71 ~~~~~f~~~L~~~~~----~~~~l~~~~~avfGl-Gds~--y~-----~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~ 138 (399)
.-++.|++++..... ....|+|+++.++.. |... |. .|...-..+...|.-+|++.+-+.........
T Consensus 309 a~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~ 388 (413)
T 3l9w_A 309 PLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFIC 388 (413)
T ss_dssp HHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTC
T ss_pred HHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCC
Confidence 899999999854311 122589999887764 4331 21 12223456677788899998755443333221
Q ss_pred CCcccchhhHHHHHHHHHH
Q 015866 139 SGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 139 ~g~~~~~~~W~~~l~~~l~ 157 (399)
.++..+.+.++..+.|.
T Consensus 389 --~d~~~~~~~~~~~~~L~ 405 (413)
T 3l9w_A 389 --DDETLEGQARHYKQRLL 405 (413)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 23444555544444443
No 71
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=95.41 E-value=0.025 Score=53.31 Aligned_cols=47 Identities=32% Similarity=0.606 Sum_probs=41.1
Q ss_pred cee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCC
Q 015866 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 276 (399)
Q Consensus 230 ~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~ 276 (399)
++. +|+++++|++.++.+++++++|++++..+.|+||+++.|+++|.
T Consensus 21 ~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~ 68 (304)
T 2bmw_A 21 PFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGV 68 (304)
T ss_dssp CEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSB
T ss_pred CEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCC
Confidence 344 99999999998889999999999985568999999999998763
No 72
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=94.59 E-value=0.058 Score=51.33 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=43.2
Q ss_pred CCCccee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCCCH
Q 015866 226 NKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDP 277 (399)
Q Consensus 226 ~~~~~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~ 277 (399)
...+++. +|+++++|+.++...+|+||+|+.+ ..+.|.+|..++|.|+..+
T Consensus 11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~ 62 (316)
T 3jqq_A 11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNE 62 (316)
T ss_dssp CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC-
T ss_pred cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcc
Confidence 3344566 9999999999888899999999997 5699999999999998654
No 73
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=93.71 E-value=0.11 Score=49.09 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=40.5
Q ss_pred cee-eeeeeeecCCCCCCce---------eEEEEEEecCCCcccccCCEEEEccCCCH
Q 015866 230 CFL-KMIKNQPLTKSGSGKD---------VHHFEFEFVSAAIEYEVGDVLEILPSQDP 277 (399)
Q Consensus 230 ~~~-~v~~~~~Lt~~~~~~~---------v~hi~l~l~~~~~~Y~~GD~l~I~P~N~~ 277 (399)
.+. +|+++++||+.++.++ +++|+|+.++..+.|+||+++.|+++|..
T Consensus 21 ~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~ 78 (314)
T 2rc5_A 21 PYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGED 78 (314)
T ss_dssp CEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBC
T ss_pred CEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCc
Confidence 344 9999999999877777 99999998855589999999999988753
No 74
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=92.98 E-value=0.16 Score=47.96 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=38.2
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
+|++++.+|+.++.+++++|+|+.++ ...|+||+++.|.++|
T Consensus 41 ~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~ 82 (314)
T 1fnb_A 41 RCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDG 82 (314)
T ss_dssp EEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSS
T ss_pred EEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCC
Confidence 99999999998888899999999884 4899999999999876
No 75
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=92.13 E-value=0.25 Score=48.55 Aligned_cols=46 Identities=30% Similarity=0.556 Sum_probs=40.0
Q ss_pred cee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 230 ~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
.+. +|++++++++.++.+++++|+|+.++....|+||+++.|.+++
T Consensus 122 ~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 168 (402)
T 2b5o_A 122 PFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPG 168 (402)
T ss_dssp CEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSS
T ss_pred CEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecC
Confidence 344 9999999999888889999999988545899999999998765
No 76
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=90.81 E-value=0.29 Score=45.27 Aligned_cols=83 Identities=13% Similarity=0.084 Sum_probs=52.8
Q ss_pred ccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC--CcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~--~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
..|++++|+=++. -+.-|..|.+.|++.|++|++++..++ +.++|.++++||+.- +....-.+...+.+.+|..
T Consensus 2 ~~m~~vLiV~g~~---~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d-~~~~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 2 NAMTRVLYCGDTS---LETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSD-YPAERMTAQAIDQLVTMVK 77 (259)
T ss_dssp ----CEEEEESSC---TTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEES-CCGGGBCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCC---chhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcC-CccccCCHHHHHHHHHHHH
Confidence 4577888882221 245677888888899999999998877 345788999888873 2212234555566666653
Q ss_pred hccCCccccCCceEEEEe
Q 015866 82 QKSLSKQWLEGVRYAVFG 99 (399)
Q Consensus 82 ~~~~~~~~l~~~~~avfG 99 (399)
.|-.+.++|
T Consensus 78 ---------~GGgLi~~g 86 (259)
T 3rht_A 78 ---------AGCGLVMLG 86 (259)
T ss_dssp ---------TTCEEEEEC
T ss_pred ---------hCCeEEEec
Confidence 255566665
No 77
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=87.59 E-value=1.5 Score=34.91 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=42.0
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCc--EEEeCCCCCcCCCCCCCeEEEEee
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPV--VVRPVDDYDARCLPEEDTVIFVVS 62 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~--~v~~l~~~~~~~l~~~~~ii~~~s 62 (399)
++++|+++=+|--||+..++.+|.+.+.+.|+++ ...++.++. ..+.++|+||....
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~-~~~~~~DlIist~~ 78 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE-TYMDGVHLICTTAR 78 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTT-TSTTSCSEEEESSC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHh-hccCCCCEEEECCc
Confidence 4568999999999999999999999999999875 445555553 23456774444333
No 78
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=83.99 E-value=7.3 Score=36.13 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=47.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC-CCcEEEeC-------CCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRG-CPVVVRPV-------DDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g-~~~~v~~l-------~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
..+|+|+-|...=.-+..+..|++.|++.| ++|++.+- +.++ .+|.++|+||+ .+.|.--.++....|.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~-~~L~~~D~vV~--~~~~~~l~~~~~~~l~ 80 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV-LDFSPYQLVVL--DYNGDSWPEETNRRFL 80 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC-CCCTTCSEEEE--CCCSSCCCHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh-hhhhcCCEEEE--eCCCCcCCHHHHHHHH
Confidence 457788855443336788889999999888 89988753 3343 46889998884 3333322344555666
Q ss_pred HHHH
Q 015866 78 RFLL 81 (399)
Q Consensus 78 ~~L~ 81 (399)
++++
T Consensus 81 ~yV~ 84 (281)
T 4e5v_A 81 EYVQ 84 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 79
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=83.26 E-value=2.1 Score=40.07 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=38.1
Q ss_pred cee-eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 230 ~~~-~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
.+. +|++++.+++.+...++++|.|+.+ ..+.|.||.++.|.++.
T Consensus 33 ~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~ 78 (310)
T 3vo2_A 33 PYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADG 78 (310)
T ss_dssp CEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSS
T ss_pred CEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCC
Confidence 355 9999999998777788999999976 56889999999998753
No 80
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=80.02 E-value=3.2 Score=32.81 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=57.0
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE--eCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVR--PVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~--~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
++++|++ .-+..++|.-+++++.+.++++|+++++. ...++. +.+.++|+ |+++|=. +..++.++.
T Consensus 5 ~~mkIlL-~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~-~~~~~~Dv-vLLgPQV---------~y~~~~ik~ 72 (108)
T 3nbm_A 5 KELKVLV-LCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY-DIMGVYDL-IILAPQV---------RSYYREMKV 72 (108)
T ss_dssp CCEEEEE-EESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT-TTGGGCSE-EEECGGG---------GGGHHHHHH
T ss_pred cCceEEE-ECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH-hhccCCCE-EEEChHH---------HHHHHHHHH
Confidence 4556554 45666899999999999999999999884 455432 23456774 4445443 222233332
Q ss_pred ccCCccccCCceEEEEecCCCCchh-HHHHHHHHHHHHHh
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLD 121 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~-f~~~~k~l~~~L~~ 121 (399)
.. .-.|+.++++-. ..|++ -...-+.++..+++
T Consensus 73 ~~----~~~~ipV~vI~~--~~Yg~~~~~g~~vl~~~~~~ 106 (108)
T 3nbm_A 73 DA----ERLGIQIVATRG--MEYIHLTKSPSKALQFVLEH 106 (108)
T ss_dssp HH----TTTTCEEEECCH--HHHHHHHTCHHHHHHHHHHT
T ss_pred Hh----hhcCCcEEEeCH--HHhhhhhCCHHHHHHHHHHh
Confidence 21 124778888863 23442 12334444444443
No 81
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=79.46 E-value=2.2 Score=39.03 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCCC----CcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceEEEE
Q 015866 23 AAERIGRESERRGCPVVVRPVDDY----DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVF 98 (399)
Q Consensus 23 ~A~~l~~~l~~~g~~~~v~~l~~~----~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avf 98 (399)
++..|++.|++.|++|++..+++. +.+.|.++|+||+...+.+.-..++....|.+++. +|..+.++
T Consensus 33 ~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~---------~GgG~vgi 103 (252)
T 1t0b_A 33 MHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVL---------EGMGLIVL 103 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHH---------TTCEEEEE
T ss_pred HHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHH---------cCCCEEEE
Confidence 355678888889999998776553 23457899999986555433344555666777764 36666666
Q ss_pred ecC
Q 015866 99 GLG 101 (399)
Q Consensus 99 GlG 101 (399)
-.|
T Consensus 104 H~a 106 (252)
T 1t0b_A 104 HSG 106 (252)
T ss_dssp GGG
T ss_pred ccc
Confidence 555
No 82
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=77.68 E-value=1.9 Score=33.99 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=39.2
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE--eCCCCCcCCCCCCCeEEEEee
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVR--PVDDYDARCLPEEDTVIFVVS 62 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~--~l~~~~~~~l~~~~~ii~~~s 62 (399)
+.++++++=+|--||+ -++++|.+.+.+.|+++++. ++.++.. .+.++|+| +.++
T Consensus 3 ~~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~-~~~~~D~I-i~t~ 59 (109)
T 2l2q_A 3 GSMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSE-VVDRFDVV-LLAP 59 (109)
T ss_dssp CCEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHH-HTTTCSEE-EECS
T ss_pred CceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHh-hcCCCCEE-EECC
Confidence 4577999999999999 99999999999999876543 4444321 24566743 4433
No 83
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=74.99 E-value=7.4 Score=31.44 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=34.6
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCC-CcEEE--eCCCC
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGC-PVVVR--PVDDY 46 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~-~~~v~--~l~~~ 46 (399)
++++|+|+=++--|++..++.+|.+.+.+.|+ .+.+. ++.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL 56 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHC
Confidence 46789999999999999999999999999998 65544 44444
No 84
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=74.43 E-value=0.93 Score=35.88 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=37.2
Q ss_pred cccCCeEEEEEECCCchHHHHHHHHHHHHHhcCCC-cE--EEeCCCCCcCCCCCCCeEE
Q 015866 3 EEKRNKLLILYASQTGNALDAAERIGRESERRGCP-VV--VRPVDDYDARCLPEEDTVI 58 (399)
Q Consensus 3 ~~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~-~~--v~~l~~~~~~~l~~~~~ii 58 (399)
+..+++|+++-++--|++.-++.+|.+.+.+.|++ +. ..++.++.. .+.++|+||
T Consensus 15 ~~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~-~~~~~DlIi 72 (110)
T 3czc_A 15 RGSMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKG-LASNYDIVV 72 (110)
T ss_dssp ---CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHH-HGGGCSEEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhh-ccCCCcEEE
Confidence 34567899999999999999999999999999987 54 334433321 133566333
No 85
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=70.32 E-value=59 Score=28.93 Aligned_cols=135 Identities=17% Similarity=0.153 Sum_probs=77.8
Q ss_pred ccccCCeEEEEEECCC---chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC------C--CCCCeEEEEeecCCCCCCc
Q 015866 2 REEKRNKLLILYASQT---GNALDAAERIGRESERRGCPVVVRPVDDYDARC------L--PEEDTVIFVVSTTGQGDTP 70 (399)
Q Consensus 2 ~~~~~~~v~IlY~S~t---G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~------l--~~~~~ii~~~sT~g~G~~p 70 (399)
++.+...|.|+..+.. .-...+.+.+.+.+.+.|+.+.+.+.+.-.... + ...+.+|+..+.. +
T Consensus 4 ~~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~ 78 (288)
T 3gv0_A 4 RTGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEP-----N 78 (288)
T ss_dssp ---CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCT-----T
T ss_pred ccCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCC-----C
Confidence 3445677888877655 567788888989999999988777654321111 1 3567777653221 1
Q ss_pred hhHHHHHHHHHhccCCccccCCceEEEEecCCC--C--c--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccc
Q 015866 71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS--G--Y--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGA 144 (399)
Q Consensus 71 ~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds--~--y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~ 144 (399)
+ ..++.+... +..+.+++.... . | .....+++.+-+.|.+.|.+++.= ..++.. ...
T Consensus 79 ~---~~~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~-i~~~~~-----~~~ 141 (288)
T 3gv0_A 79 D---PRVRFMTER--------NMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAV-IVPPSR-----FSF 141 (288)
T ss_dssp C---HHHHHHHHT--------TCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEE-ECCCTT-----SHH
T ss_pred c---HHHHHHhhC--------CCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEE-EcCCcc-----cch
Confidence 1 245555443 445555554211 1 1 134567888888899999988752 223222 223
Q ss_pred hhhHHHHHHHHHHh
Q 015866 145 LDPWMRSLWRRLHQ 158 (399)
Q Consensus 145 ~~~W~~~l~~~l~~ 158 (399)
.....+.+.+++.+
T Consensus 142 ~~~R~~gf~~~l~~ 155 (288)
T 3gv0_A 142 HDHARKGFNRGIRD 155 (288)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555667777754
No 86
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=64.36 E-value=27 Score=31.61 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=34.0
Q ss_pred CCeEEEEEECCCchHHH---HHHHHHHHHHhcCCCcEEEeCCCCCcCCC
Q 015866 6 RNKLLILYASQTGNALD---AAERIGRESERRGCPVVVRPVDDYDARCL 51 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~---~A~~l~~~l~~~g~~~~v~~l~~~~~~~l 51 (399)
+++|.|+++.++.--+. .++.+.+.+.+.|+++.+++.++.....+
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~ 50 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL 50 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHh
Confidence 47899999876543332 66788888999999999999886554444
No 87
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=62.17 E-value=15 Score=33.93 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=35.6
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
+|++.+.+++++...+++++.|..+ ....|+||.++.|..+.
T Consensus 32 ~V~~~~~~t~~~~~~~v~~~~l~~~-~~~~~~pGQ~v~l~~~~ 73 (311)
T 3lo8_A 32 TIVSVESLVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 73 (311)
T ss_dssp EEEEEEECSCTTSSSCEEEEEEECT-TSSCCCTTCEEEEECSS
T ss_pred EEEeeEeccCCCCCCccEEEEEeCC-CCCcccCCCEEEEeCCC
Confidence 8999999986555578999999987 46899999999998754
No 88
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=62.11 E-value=4.5 Score=35.33 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=35.3
Q ss_pred CeEEEE-EECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhH
Q 015866 7 NKLLIL-YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSM 73 (399)
Q Consensus 7 ~~v~Il-Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~ 73 (399)
++|+|+ ||+ ||+..+++.| ++.|.++.+.. +++++...|.||+ | |-|.+.+.+
T Consensus 3 ~~I~iiD~g~--~n~~si~~al----~~~G~~~~v~~----~~~~l~~~D~lil--P--G~g~~~~~~ 56 (211)
T 4gud_A 3 QNVVIIDTGC--ANISSVKFAI----ERLGYAVTISR----DPQVVLAADKLFL--P--GVGTASEAM 56 (211)
T ss_dssp CCEEEECCCC--TTHHHHHHHH----HHTTCCEEEEC----CHHHHHHCSEEEE--C--CCSCHHHHH
T ss_pred CEEEEEECCC--ChHHHHHHHH----HHCCCEEEEEC----CHHHHhCCCEEEE--C--CCCCHHHHH
Confidence 357776 776 6887777655 55799888763 3456667787776 4 667665533
No 89
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=61.23 E-value=7.4 Score=33.18 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=37.2
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
+.+..+++|+-.||.....++.-+..+.++|.++|++...-....|+
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd 53 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN 53 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC
Confidence 46678999999999976667778888999999999987654444554
No 90
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=60.65 E-value=4.7 Score=31.56 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=39.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC--CCCCcCCCCCCCeEEEEeecC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPV--DDYDARCLPEEDTVIFVVSTT 64 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l--~~~~~~~l~~~~~ii~~~sT~ 64 (399)
+++|+++=|+--||+ -+++++.+.++++|+++++... .++.. .+.++| +|+.+|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAGE-KGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTTH-HHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHh-hccCCC-EEEEccch
Confidence 467888888888888 8999999999999998765543 33321 123466 44455544
No 91
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=59.66 E-value=27 Score=32.35 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=58.8
Q ss_pred CccccCCeEEEEEECCCch--HHHHHHHHHHHHHhcCCCcEEEeCCCCC-c----CCC-CCCCeEEEEeecCCCCCCchh
Q 015866 1 MREEKRNKLLILYASQTGN--ALDAAERIGRESERRGCPVVVRPVDDYD-A----RCL-PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~tG~--te~~A~~l~~~l~~~g~~~~v~~l~~~~-~----~~l-~~~~~ii~~~sT~g~G~~p~~ 72 (399)
|...++++++|++--..|+ +.+..+++...|.++|+++++..-..-. . .++ .+++.||+ +. |+|.
T Consensus 3 m~~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~-~G--GDGT---- 75 (304)
T 3s40_A 3 MTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIV-FG--GDGT---- 75 (304)
T ss_dssp --CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEE-EE--CHHH----
T ss_pred CccCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEE-Ec--cchH----
Confidence 7778899999999887665 6688889999999999888877544321 1 111 24554443 33 6764
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCCC
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG 104 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~ 104 (399)
.......|... -.+..++++=+|..+
T Consensus 76 l~~v~~~l~~~------~~~~~l~iiP~Gt~N 101 (304)
T 3s40_A 76 VFECTNGLAPL------EIRPTLAIIPGGTCN 101 (304)
T ss_dssp HHHHHHHHTTC------SSCCEEEEEECSSCC
T ss_pred HHHHHHHHhhC------CCCCcEEEecCCcHH
Confidence 55566555331 145789999888665
No 92
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=58.45 E-value=57 Score=29.56 Aligned_cols=79 Identities=14% Similarity=-0.007 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------------CCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR------------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------------~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~ 87 (399)
...+|++|++.+.+.|+++...+-.+...+ +..+..+|-+...+ ...|+...+|-+.|...-
T Consensus 89 d~~la~~i~~~~~~~g~~~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~---~~~~~~~~~lG~al~~~~--- 162 (271)
T 3vsj_A 89 DTALAEACVTSSPLHGVHARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNL---YHSGEITEKLAALAVDCA--- 162 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEET---TCCHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHCCCcEEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCC---CCCHHHHHHHHHHHHHHH---
Confidence 478999999999999988764432222111 11123444444432 456677777777775421
Q ss_pred cccCCceEEEEecCCCCc
Q 015866 88 QWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y 105 (399)
.-.+.+++|+|+||.+.
T Consensus 163 -~~~~~~vlii~SGdlsH 179 (271)
T 3vsj_A 163 -KDQNKRVAVVGVGGLSG 179 (271)
T ss_dssp -HHTTCCEEEEEECCSCC
T ss_pred -HHcCCCEEEEEECcccc
Confidence 01367899999999764
No 93
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=57.28 E-value=44 Score=29.73 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=79.2
Q ss_pred ccccCCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC--CCCCeEEEEeecCCCCCCchh
Q 015866 2 REEKRNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 2 ~~~~~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l--~~~~~ii~~~sT~g~G~~p~~ 72 (399)
+..+...|.|+..+.+. -...+.+.+.+.+.+.|+.+.+++.+.-... .+ ...+.||+..... .+
T Consensus 4 ~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~- 77 (291)
T 3egc_A 4 RSKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-----EH- 77 (291)
T ss_dssp ---CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-----CC-
T ss_pred ccCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-----Ch-
Confidence 34456677777765443 4567788888999999999888876542111 11 3567676654332 11
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCC--Cc----hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchh
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS--GY----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALD 146 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds--~y----~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~ 146 (399)
..++.+.. .+..+.+++.... .+ ...-.+++.+-+.|.+.|.+++. ...++.. .....
T Consensus 78 --~~~~~~~~--------~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~-~i~~~~~-----~~~~~ 141 (291)
T 3egc_A 78 --DYLRTELP--------KTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHTRIG-AIVGSAG-----LMTSR 141 (291)
T ss_dssp --HHHHHSSC--------TTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCCSEE-EECSCTT-----SHHHH
T ss_pred --HHHHHhhc--------cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCCEEE-EEeCCCC-----CcCHH
Confidence 24444322 3556666664322 11 13556788888888888988774 2222221 23456
Q ss_pred hHHHHHHHHHHhh
Q 015866 147 PWMRSLWRRLHQI 159 (399)
Q Consensus 147 ~W~~~l~~~l~~~ 159 (399)
.+.+.+.+++.+.
T Consensus 142 ~R~~gf~~~l~~~ 154 (291)
T 3egc_A 142 ERLKGFRAAMSAA 154 (291)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 6677777777653
No 94
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=56.58 E-value=1.1e+02 Score=27.25 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=78.4
Q ss_pred CccccCCeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-C----C--CCCCeEEEEeecCCCCC
Q 015866 1 MREEKRNKLLILYAS-----QTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-C----L--PEEDTVIFVVSTTGQGD 68 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S-----~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-~----l--~~~~~ii~~~sT~g~G~ 68 (399)
|++.+...|.|+..+ ....-..+.+.+.+.+.+.|+.+.+.+.++.... . + ...+.||+..... .
T Consensus 1 L~~~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~-~-- 77 (294)
T 3qk7_A 1 MSLGRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP-E-- 77 (294)
T ss_dssp ----CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS-S--
T ss_pred CCCCccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC-C--
Confidence 455667778888862 2334567888888999999999888877651111 0 1 2567777654432 1
Q ss_pred CchhHHHHHHHHHhccCCccccCCceEEEEecCC--CCc----hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcc
Q 015866 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGD--SGY----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYE 142 (399)
Q Consensus 69 ~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGd--s~y----~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~ 142 (399)
+ ..++.+... +..+.+++... ..+ .....+++.+-+.|.++|.+++. ...+... .
T Consensus 78 --~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~-~i~~~~~-----~ 138 (294)
T 3qk7_A 78 --D---FRLQYLQKQ--------NFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQRIA-FVSTDAR-----I 138 (294)
T ss_dssp --C---HHHHHHHHT--------TCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCCCEE-EEEESSC-----C
T ss_pred --h---HHHHHHHhC--------CCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCceEE-EEeCCcc-----c
Confidence 1 344555443 44566665421 111 13456778888888889998875 3333322 2
Q ss_pred cchhhHHHHHHHHHHh
Q 015866 143 GALDPWMRSLWRRLHQ 158 (399)
Q Consensus 143 ~~~~~W~~~l~~~l~~ 158 (399)
.......+.+.+++.+
T Consensus 139 ~~~~~R~~Gf~~al~~ 154 (294)
T 3qk7_A 139 SYVDQRLQGYVQTMSE 154 (294)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHH
Confidence 2344556677777754
No 95
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=54.05 E-value=14 Score=34.29 Aligned_cols=41 Identities=7% Similarity=0.043 Sum_probs=32.3
Q ss_pred CCeEEEEEECCCchHHH---HHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 6 RNKLLILYASQTGNALD---AAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~---~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
+++|.|+||..+.--+- -|+.+.+.|++.|+++.+++.++.
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~ 56 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAER 56 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 57899999977664443 578888999999999998886554
No 96
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=52.63 E-value=1e+02 Score=27.06 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=78.0
Q ss_pred ccccCCeEEEEEEC------CCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc------CCC--CCCCeEEEEeecCCCC
Q 015866 2 REEKRNKLLILYAS------QTGNALDAAERIGRESERRGCPVVVRPVDDYDA------RCL--PEEDTVIFVVSTTGQG 67 (399)
Q Consensus 2 ~~~~~~~v~IlY~S------~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~------~~l--~~~~~ii~~~sT~g~G 67 (399)
++.+...|.|+..+ .......+.+.+.+.+.+.|+.+.+.+.+.-.. +.+ ...+.||+..+..
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--- 80 (292)
T 3k4h_A 4 ANQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE--- 80 (292)
T ss_dssp ---CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT---
T ss_pred ccCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC---
Confidence 34456677777766 344567888889999999999887766543110 011 3567777644322
Q ss_pred CCchhHHHHHHHHHhccCCccccCCceEEEEecCCC-----Cc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCC
Q 015866 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS-----GY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSG 140 (399)
Q Consensus 68 ~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds-----~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g 140 (399)
++ ..++.+... +..+.+++.... .| .....+++.+.+.|.+.|.+++. ...++..
T Consensus 81 --~~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~-~i~~~~~---- 142 (292)
T 3k4h_A 81 --ND---RIIQYLHEQ--------NFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIA-FIGGGSD---- 142 (292)
T ss_dssp --TC---HHHHHHHHT--------TCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEE-EEESCTT----
T ss_pred --Ch---HHHHHHHHC--------CCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEE-EEeCccc----
Confidence 11 345555443 455666664311 11 13456788888888889988775 2233221
Q ss_pred cccchhhHHHHHHHHHHhh
Q 015866 141 YEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 141 ~~~~~~~W~~~l~~~l~~~ 159 (399)
........+.+.+++.+.
T Consensus 143 -~~~~~~R~~gf~~~l~~~ 160 (292)
T 3k4h_A 143 -LLVTRDRLAGMSDALKLA 160 (292)
T ss_dssp -BHHHHHHHHHHHHHHHHT
T ss_pred -chhHHHHHHHHHHHHHHc
Confidence 223445566777777653
No 97
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=51.18 E-value=26 Score=28.40 Aligned_cols=121 Identities=19% Similarity=0.155 Sum_probs=67.1
Q ss_pred EEEEECCCchHHHHHH-HHHHHHHhcCCCcEEEeCCCCCcCCC----CCCC-eEEEEeecCCCCCCchhHHHHHHHHHhc
Q 015866 10 LILYASQTGNALDAAE-RIGRESERRGCPVVVRPVDDYDARCL----PEED-TVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~-~l~~~l~~~g~~~~v~~l~~~~~~~l----~~~~-~ii~~~sT~g~G~~p~~~~~f~~~L~~~ 83 (399)
.|+-++.-|..-.+.. .++..|+..|++|.-.-. +.+++++ .+.+ -+|.+|++. +.....+.++.+.|++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~-~~p~e~~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGV-LSPQELFIKAAIETKADAILVSSLY--GQGEIDCKGLRQKCDEA 81 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEE-EECHHHHHHHHHHHTCSEEEEEECS--STHHHHHTTHHHHHHHT
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHHHHhc
Confidence 4555566665555544 455666788987752222 2333333 1222 355556655 44455678888888764
Q ss_pred cCCccccCCceEEEEecC---CCCchhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHHHHHH
Q 015866 84 SLSKQWLEGVRYAVFGLG---DSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (399)
Q Consensus 84 ~~~~~~l~~~~~avfGlG---ds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l 156 (399)
. +.+.++.|=|.. ...|. ...+.++++|+..++..+. ....|.+.+.+.+
T Consensus 82 g-----~~~i~v~vGG~~~~~~~~~~-------~~~~~~~~~G~d~~~~~g~-----------~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 82 G-----LEGILLYVGGNIVVGKQHWP-------DVEKRFKDMGYDRVYAPGT-----------PPEVGIADLKKDL 134 (137)
T ss_dssp T-----CTTCEEEEEESCSSSSCCHH-------HHHHHHHHTTCSEECCTTC-----------CHHHHHHHHHHHH
T ss_pred C-----CCCCEEEEECCCcCchHhhh-------hhHHHHHHCCCCEEECCCC-----------CHHHHHHHHHHHh
Confidence 2 345666555532 22332 2346788999988875332 3445655555544
No 98
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=49.53 E-value=36 Score=26.42 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=33.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
++.+++++++--|-++.+...|.+...+.|++...+|+++
T Consensus 29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~ 68 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDG 68 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTT
T ss_pred ccEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 4567777777889999999999888888899888899875
No 99
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=49.52 E-value=96 Score=25.62 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=41.5
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC---CcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 9 v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~---~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
-.++||+ |++..+|+.++..+...|..+..++-.+. ....+...+++|+++ .. |..+ ......+.+++
T Consensus 51 ~I~i~G~--G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS-~s--G~t~-~~~~~~~~ak~ 121 (183)
T 2xhz_A 51 KVVVMGM--GASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAIS-NS--GESS-EITALIPVLKR 121 (183)
T ss_dssp CEEEEEC--HHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEEC-SS--SCCH-HHHHHHHHHHT
T ss_pred eEEEEee--cHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEe-CC--CCCH-HHHHHHHHHHH
Confidence 3556774 88999999999999988887765532111 112344556555544 43 4544 45666666643
No 100
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=48.98 E-value=16 Score=33.61 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=33.4
Q ss_pred CCeEEEEEEC---------------CCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 6 RNKLLILYAS---------------QTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 6 ~~~v~IlY~S---------------~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
+|+|+++-.+ ..|.++..+..+++.|.+.|++|.++....
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~ 57 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPG 57 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4777777665 459999999999999999999999987764
No 101
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=48.73 E-value=12 Score=33.74 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCC---CcCC-------C-CCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC-ccccC
Q 015866 24 AERIGRESERRGCPVVVRPVDDY---DARC-------L-PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS-KQWLE 91 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~v~~l~~~---~~~~-------l-~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~-~~~l~ 91 (399)
+..+++.|++.|+++..+.+=+. +... + ..++.|||.|+. ..+.|++.+.....+ ...+.
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~--------aV~~~~~~l~~~~~~~~~~l~ 90 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGV--------GVRDLLEAGKALGLDLEGPLA 90 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHH--------HHHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHH--------HHHHHHHHHHHhCchHHHHhc
Confidence 56677777778976643322111 1122 3 257766665542 367788887653221 01234
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 92 GVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 92 ~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
+.+++++| ..-.+.|++.|.+.
T Consensus 91 ~~~i~avG-------------~~Ta~~l~~~G~~~ 112 (261)
T 1wcw_A 91 KAFRLARG-------------AKAARALKEAGLPP 112 (261)
T ss_dssp HSEEEESS-------------HHHHHHHHHTTCCC
T ss_pred CCeEEEEC-------------HHHHHHHHHcCCCC
Confidence 56776666 34455677888764
No 102
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=48.59 E-value=1.6e+02 Score=26.76 Aligned_cols=133 Identities=10% Similarity=-0.004 Sum_probs=76.7
Q ss_pred cCCeEEEEEEC--C-CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-------CC--CCCCeEEEEeecCCCCCCchh
Q 015866 5 KRNKLLILYAS--Q-TGNALDAAERIGRESERRGCPVVVRPVDDYDAR-------CL--PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 5 ~~~~v~IlY~S--~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-------~l--~~~~~ii~~~sT~g~G~~p~~ 72 (399)
+...|.++..+ . ...-..+.+.+.+.+.+.|+.+.+.+.+. +.+ .+ ...+.||+..... .
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~-~------ 131 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKH-SAEEERQAIQYLLDLRCDAIMIYPRFL-S------ 131 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTT-SHHHHHHHHHHHHHTTCSEEEECCSSS-C------
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEeCCCC-C------
Confidence 34567777766 3 23456788888899999999988887543 211 11 2567776643221 1
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCCC--c----hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchh
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG--Y----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALD 146 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~--y----~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~ 146 (399)
...+.+.+... +..+.+++..... + .....+++.+-+.|.++|.+++. ...++.. .....
T Consensus 132 ~~~~~~~~~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~-~i~~~~~-----~~~~~ 197 (338)
T 3dbi_A 132 VDEIDDIIDAH--------SQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIA-FLTGSMD-----SPTSI 197 (338)
T ss_dssp HHHHHHHHHHC--------SSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHHTTCCSEE-EECCCTT-----CHHHH
T ss_pred hHHHHHHHHcC--------CCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHHCCCCEEE-EEeCCCC-----CccHH
Confidence 12344444332 3445666543221 1 13446778888888888988874 2223221 23455
Q ss_pred hHHHHHHHHHHhh
Q 015866 147 PWMRSLWRRLHQI 159 (399)
Q Consensus 147 ~W~~~l~~~l~~~ 159 (399)
.+.+.+.+++.+.
T Consensus 198 ~R~~Gf~~al~~~ 210 (338)
T 3dbi_A 198 ERLAGYKDALAQH 210 (338)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 6777788888653
No 103
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=45.50 E-value=15 Score=29.06 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=28.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA 48 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~ 48 (399)
-+.|.|||+.+.+.+.++.+ ++.|+++.++++..+.|
T Consensus 16 v~iv~~Gs~~~~a~eA~~~L----~~~Gi~v~vi~~r~~~P 52 (118)
T 3ju3_A 16 ITFVTWGSQKGPILDVIEDL----KEEGISANLLYLKMFSP 52 (118)
T ss_dssp EEEEEEGGGHHHHHHHHHHH----HHTTCCEEEEEECSSCS
T ss_pred EEEEEECccHHHHHHHHHHH----HHCCCceEEEEECeEec
Confidence 45666999999988888765 45699999998876643
No 104
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=45.49 E-value=1.5e+02 Score=25.80 Aligned_cols=134 Identities=13% Similarity=0.024 Sum_probs=74.8
Q ss_pred ccccCCeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC--CCCCCCeEEEEeecCCCCCCchhHHHHHH
Q 015866 2 REEKRNKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDYDAR--CLPEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (399)
Q Consensus 2 ~~~~~~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~--~l~~~~~ii~~~sT~g~G~~p~~~~~f~~ 78 (399)
++.+...|.|+..+. ...-..+.+.+.+.+.+.|+.+.+.+.++-... .+ ..+.||+..... ++ ..++
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~-~vdgiI~~~~~~-----~~---~~~~ 74 (277)
T 3cs3_A 4 KRRQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEK-MVDGAIILDWTF-----PT---KEIE 74 (277)
T ss_dssp CCCCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTT-TCSEEEEECTTS-----CH---HHHH
T ss_pred cccCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhc-cccEEEEecCCC-----CH---HHHH
Confidence 444556777776553 334567888888999999998888776532111 12 566676654322 11 2344
Q ss_pred HHHhccCCccccCCceEEEEecCCC--Cc----hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHHH
Q 015866 79 FLLQKSLSKQWLEGVRYAVFGLGDS--GY----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (399)
Q Consensus 79 ~L~~~~~~~~~l~~~~~avfGlGds--~y----~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~l 152 (399)
.+... +..+.+++.... .+ .....+++.+-+.|.++|.+++. ...++.. ........+.+
T Consensus 75 ~l~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~-~i~~~~~-----~~~~~~R~~gf 140 (277)
T 3cs3_A 75 KFAER--------GHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKKVL-LLSGPEK-----GYDSQERLAVS 140 (277)
T ss_dssp HHHHT--------TCEEEESSSCCCSTTEEEEEECHHHHHHHHHHHHHHTTCSCEE-EEECCTT-----SHHHHHHHHHH
T ss_pred HHHhc--------CCCEEEEecCCCCCCCCEEEeCcHHHHHHHHHHHHHcCCceEE-EEeCCcc-----CccHHHHHHHH
Confidence 55432 334444442111 11 12446777788888888988764 2233322 12334556667
Q ss_pred HHHHHh
Q 015866 153 WRRLHQ 158 (399)
Q Consensus 153 ~~~l~~ 158 (399)
.+++.+
T Consensus 141 ~~~l~~ 146 (277)
T 3cs3_A 141 TRELTR 146 (277)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777754
No 105
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=45.08 E-value=1.1e+02 Score=24.10 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=61.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC---------CcCCCCCCCeEEEEeecCCCCCCchhHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---------DARCLPEEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~---------~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
.+.+.|+=+ +-+..+++.++.+.|.+.|+++..++...- +..+++.-|+++++.+ |+.....
T Consensus 4 p~siAVVGa--S~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p-------~~~v~~~ 74 (122)
T 3ff4_A 4 MKKTLILGA--TPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYIN-------PQNQLSE 74 (122)
T ss_dssp CCCEEEETC--CSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSC-------HHHHGGG
T ss_pred CCEEEEEcc--CCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeC-------HHHHHHH
Confidence 455666533 445668899999999999997766665421 2345555677777654 3445556
Q ss_pred HHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
++.+.+. |.+..+|-.|-. -..+.+..++.|.+.+
T Consensus 75 v~e~~~~--------g~k~v~~~~G~~--------~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 75 YNYILSL--------KPKRVIFNPGTE--------NEELEEILSENGIEPV 109 (122)
T ss_dssp HHHHHHH--------CCSEEEECTTCC--------CHHHHHHHHHTTCEEE
T ss_pred HHHHHhc--------CCCEEEECCCCC--------hHHHHHHHHHcCCeEE
Confidence 6665443 444567877732 2467777888898766
No 106
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=45.00 E-value=21 Score=33.76 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=33.6
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~ 47 (399)
+++|.|.|+..+..|+.+.+.+.+.|+.+.+..+..+.
T Consensus 95 v~Ll~SDT~~G~l~AeiLke~l~~~G~~v~~~~V~gL~ 132 (324)
T 3qyf_A 95 VFLYSTNTSNSQLAGEVIRDYLIEEGIRSELVTVKTIS 132 (324)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHcCCeeEEEEcCCCC
Confidence 57999999999999999999999999888877666655
No 107
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.90 E-value=1.3e+02 Score=26.47 Aligned_cols=136 Identities=10% Similarity=0.059 Sum_probs=73.3
Q ss_pred ccccCCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC--CCCCeEEEEeecCCCCCCchh
Q 015866 2 REEKRNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 2 ~~~~~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l--~~~~~ii~~~sT~g~G~~p~~ 72 (399)
++.+...|.|+..+.+. ....+.+.+.+.+.+.|+.+.+.+.+.-... .+ ...+.||+..... +.
T Consensus 4 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~------~~ 77 (293)
T 3l6u_A 4 TSPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDD------VY 77 (293)
T ss_dssp -----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT------TT
T ss_pred CCCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh------HH
Confidence 44556778887766543 4567788888889999999888876532110 11 3567777653321 12
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCCC---c----hhHHHHHHHHHHHHHh-C-CCe-----eeccceeecCCCC
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG---Y----QKFNFVAKKLDNRLLD-L-GAT-----AVVERGLGDDQHP 138 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~---y----~~f~~~~k~l~~~L~~-l-Ga~-----~~~~~~~~D~~~~ 138 (399)
....++.+... +..+.+++..... + .....+++.+-+.|.+ + |.+ ++. ...++..
T Consensus 78 ~~~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~-~i~g~~~-- 146 (293)
T 3l6u_A 78 IGSAIEEAKKA--------GIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIV-EITGTAN-- 146 (293)
T ss_dssp THHHHHHHHHT--------TCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEE-EEECSTT--
T ss_pred HHHHHHHHHHc--------CCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEE-EEECCCC--
Confidence 33455555443 4556666543211 1 1344566666677776 5 766 653 2222221
Q ss_pred CCcccchhhHHHHHHHHHH
Q 015866 139 SGYEGALDPWMRSLWRRLH 157 (399)
Q Consensus 139 ~g~~~~~~~W~~~l~~~l~ 157 (399)
........+.+.+++.
T Consensus 147 ---~~~~~~R~~gf~~~l~ 162 (293)
T 3l6u_A 147 ---VYTTNERHRGFLKGIE 162 (293)
T ss_dssp ---CHHHHHHHHHHHHHHT
T ss_pred ---CchHHHHHHHHHHHHH
Confidence 2244555666666664
No 108
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=44.70 E-value=29 Score=31.35 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeCCCCCc-----------CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 21 LDAAERIGRESERRGCPVVVRPVDDYDA-----------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 21 e~~A~~l~~~l~~~g~~~~v~~l~~~~~-----------~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
+.-|..+++.|++.|+++..+.+=++.+ .++..++.|||.|+. ..+.|++.+..... .
T Consensus 23 ~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~n--------aV~~~~~~l~~~~~---~ 91 (269)
T 3re1_A 23 AEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKP--------AARLAIELIDEVWP---Q 91 (269)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHH--------HHHHHHHHHHHHCS---S
T ss_pred hHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHH--------HHHHHHHHHHHhCC---C
Confidence 4447778888888998765443322111 134567766665543 36668888765321 2
Q ss_pred cCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecc
Q 015866 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 90 l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
++++++++.| ..-.+.|++.|.+..++
T Consensus 92 ~~~~~i~aVG-------------~~Ta~aL~~~G~~~~~~ 118 (269)
T 3re1_A 92 PPMQPWFSVG-------------SATGQILLDYGLDASWP 118 (269)
T ss_dssp CCCSCEEESS-------------HHHHHHHHHTTCCEECC
T ss_pred cccCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 4456666666 34456778889877654
No 109
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=44.61 E-value=19 Score=25.65 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=32.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
.++.++|++--|.++.+...+.+.+.+.|.+..+++++.
T Consensus 2 ~~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~ 40 (80)
T 2k8s_A 2 ASKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGT 40 (80)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTT
T ss_pred cceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 358889999999999999999887777777777888764
No 110
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=44.41 E-value=1.5e+02 Score=25.96 Aligned_cols=136 Identities=12% Similarity=0.071 Sum_probs=79.5
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC--CCCCeEEEEeecCCCCCCchhHHHH
Q 015866 6 RNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l--~~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
.+.|.|+..+.+. -...+.+.+.+.+.+.|+.+.+.+.+.-... .+ ...+.||+..... ..++.....
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~~~~ 91 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKS---ALQTPNIGY 91 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSST---TSCCTTHHH
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccc---cccCCcHHH
Confidence 3667777766543 4677888999999999999888876532111 11 3567777654332 112223345
Q ss_pred HHHHHhccCCccccCCceEEEEecCCC--C--c--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHH
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGDS--G--Y--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMR 150 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGds--~--y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~ 150 (399)
++.+... +..+.+++.... . | ...-.+++.+-+.|.+.|.+++.= ..+.. . .....+.+
T Consensus 92 ~~~~~~~--------~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~-i~~~~-----~-~~~~~R~~ 156 (298)
T 3tb6_A 92 YLNLEKN--------GIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMG-IFKAD-----D-TQGVKRMN 156 (298)
T ss_dssp HHHHHHT--------TCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEE-EEESS-----S-HHHHHHHH
T ss_pred HHHHHhc--------CCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEE-EcCCC-----C-ccHHHHHH
Confidence 6666543 455666654211 1 1 134567888888888999888752 22221 1 23445566
Q ss_pred HHHHHHHhh
Q 015866 151 SLWRRLHQI 159 (399)
Q Consensus 151 ~l~~~l~~~ 159 (399)
.+.+++.+.
T Consensus 157 gf~~~l~~~ 165 (298)
T 3tb6_A 157 GFIQAHRER 165 (298)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 677777543
No 111
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=44.29 E-value=22 Score=28.04 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=41.9
Q ss_pred CCeEEEEEECCCchHH--HHHHHHHHHHHhcCCCcEEEe------CCCCCcCCCCCCCeEEEEeec
Q 015866 6 RNKLLILYASQTGNAL--DAAERIGRESERRGCPVVVRP------VDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te--~~A~~l~~~l~~~g~~~~v~~------l~~~~~~~l~~~~~ii~~~sT 63 (399)
+|+++.+-+.-||-+- ..|+.|.+.+++.|+++.+-. -+.++.+++...+.||+.+.+
T Consensus 5 ~mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 5 SKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred cccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 4778888999999654 568999999999999876521 134455566778888877654
No 112
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=44.03 E-value=83 Score=30.80 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=65.8
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC---CCCCeEEEEeecCC---------CCCC------
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL---PEEDTVIFVVSTTG---------QGDT------ 69 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l---~~~~~ii~~~sT~g---------~G~~------ 69 (399)
+|. +.|+. | ..-+..|.+.|++.|+++..+.-+ ...+++ ....+.+++++.++ .|.|
T Consensus 198 ~vn-ilG~~--~-~~~~~ei~~lL~~~Gi~v~~~~~~-~~~~el~~~~~A~~ni~~~~~~~~~A~~Le~~~giP~~~~~~ 272 (460)
T 2xdq_A 198 PLV-LFGSL--P-DPVVTQLTLELKKQGIKVSGWLPA-KRYTELPVIDEGYYVAGVNPFLSRTATTLIRRRKCQLITAPF 272 (460)
T ss_dssp CEE-EESCC--C-HHHHHHHHHHHGGGTCCEEEEESC-SSGGGCCCCCTTCEEEESSTTCHHHHHHHHHTTCCEEECCCC
T ss_pred cEE-EEEec--C-ccHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHccccCcEEEEcCHhHHHHHHHHHHHcCCCceecCc
Confidence 454 44765 2 555778999999999998764332 233444 45566666666543 1211
Q ss_pred ---chhHHHHHHHHHhcc-CC------------------ccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 70 ---PDSMKVFWRFLLQKS-LS------------------KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 70 ---p~~~~~f~~~L~~~~-~~------------------~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
+++..+|++.|.+.- .+ ...+.|++++|+|=++..+ .+.+.|.++|++.+
T Consensus 273 P~G~~~T~~~Lr~ia~~~g~~~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~--------~la~~L~elGm~vv 344 (460)
T 2xdq_A 273 PIGPDGTRTWIEQICATFGIQPQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEI--------SLARFLIRCGMRVL 344 (460)
T ss_dssp SBHHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHH--------HHHHHHHHTTCEEE
T ss_pred CccHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHH--------HHHHHHHHCCCEEE
Confidence 145566766664431 01 1247899999997554433 45566778999887
Q ss_pred c
Q 015866 128 V 128 (399)
Q Consensus 128 ~ 128 (399)
.
T Consensus 345 ~ 345 (460)
T 2xdq_A 345 E 345 (460)
T ss_dssp E
T ss_pred E
Confidence 5
No 113
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=42.52 E-value=30 Score=27.06 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=52.3
Q ss_pred CCeEEEEEECCCchH--HHHHHHHHHHHHhcCCCcEEE--eC----CCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 6 RNKLLILYASQTGNA--LDAAERIGRESERRGCPVVVR--PV----DDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 6 ~~~v~IlY~S~tG~t--e~~A~~l~~~l~~~g~~~~v~--~l----~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
+|+++.+=+--||-+ -..|+.|.+.+++.|+++.+- .. +.++.+++...+.||+.+-+- . ++..+|
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~----v-~~~~RF- 75 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTK----V-RNKERF- 75 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSC----C-STHHHH-
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEecccc----c-cchhcc-
Confidence 478888888888854 455899999999999876543 22 444455667788888776542 1 234444
Q ss_pred HHHHhccCCccccCCceEEEEecC
Q 015866 78 RFLLQKSLSKQWLEGVRYAVFGLG 101 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~avfGlG 101 (399)
.|+++.-.+..
T Consensus 76 -------------~gk~v~~~~v~ 86 (106)
T 2m1z_A 76 -------------DGKVVLEVPVS 86 (106)
T ss_dssp -------------TTSEEEEECTT
T ss_pred -------------CCCcEEEEcHH
Confidence 47777777764
No 114
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=42.11 E-value=1.5e+02 Score=25.81 Aligned_cols=133 Identities=9% Similarity=-0.038 Sum_probs=73.3
Q ss_pred ccccCCeEEEEEECCC-chHHHHHHHHHHHHHhcCCCcEEEeCCCCCc------CCC--CCCCeEEEEeecCCCCCCchh
Q 015866 2 REEKRNKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVDDYDA------RCL--PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 2 ~~~~~~~v~IlY~S~t-G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~------~~l--~~~~~ii~~~sT~g~G~~p~~ 72 (399)
++.+...|.|+..+.+ .....+.+.+.+.+.+.|+.+.+.+.+.-.. +.+ ...+.||+... .
T Consensus 4 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-------~-- 74 (277)
T 3e61_A 4 YKRKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-------N-- 74 (277)
T ss_dssp ------CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-------G--
T ss_pred ccCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-------C--
Confidence 3445567777776643 4567788888899999999998887764211 011 35677776441 1
Q ss_pred HHHHHH-HHHhccCCccccCCceEEEEecCCCC--c--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhh
Q 015866 73 MKVFWR-FLLQKSLSKQWLEGVRYAVFGLGDSG--Y--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDP 147 (399)
Q Consensus 73 ~~~f~~-~L~~~~~~~~~l~~~~~avfGlGds~--y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~ 147 (399)
...++ .+... +..+.+++..... | ...-.+++.+.+.|.+.|.+++. ...++.. ......
T Consensus 75 -~~~~~~~l~~~--------~iPvV~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~-~i~~~~~-----~~~~~~ 139 (277)
T 3e61_A 75 -ENIIENTLTDH--------HIPFVFIDRINNEHNGISTNHFKGGQLQAEVVRKGKGKNVL-IVHENLL-----IDAFHQ 139 (277)
T ss_dssp -HHHHHHHHHHC---------CCEEEGGGCC---------HHHHHHHHHHHHHHTTCCSEE-EEESCTT-----SHHHHH
T ss_pred -hHHHHHHHHcC--------CCCEEEEeccCCCCCeEEechHHHHHHHHHHHHHCCCCeEE-EEeCCCC-----CccHHH
Confidence 12355 55443 4445555432111 2 13445788888888889988764 2223221 234455
Q ss_pred HHHHHHHHHHh
Q 015866 148 WMRSLWRRLHQ 158 (399)
Q Consensus 148 W~~~l~~~l~~ 158 (399)
+.+.+.+++.+
T Consensus 140 R~~gf~~~l~~ 150 (277)
T 3e61_A 140 RVQGIKYILDQ 150 (277)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 56667777753
No 115
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.49 E-value=1.8e+02 Score=25.36 Aligned_cols=106 Identities=14% Similarity=0.041 Sum_probs=66.0
Q ss_pred CCeEEEEEECCC-chHHHHHHHHHHHHHhcCCCcEEEeCCCCCc------CCC--CCCCeEEEEeecCCCCCCchhHHHH
Q 015866 6 RNKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVDDYDA------RCL--PEEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~t-G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~------~~l--~~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
...|.|+..+.+ ..-..+.+.+.+.+.+.|+.+.+.+.+.-.. +.+ ...+.||+..... ...
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---------~~~ 77 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---------PQT 77 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---------HHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---------HHH
Confidence 456777776543 3456778888899999999988887654211 011 3566666654321 345
Q ss_pred HHHHHhccCCccccCCceEEEEecCCC--Cc----hhHHHHHHHHHHHHHhCCCeeec
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGDS--GY----QKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGds--~y----~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
++.+... +..+.+++.... .+ .....+++.+-+.|.+.|.+++.
T Consensus 78 ~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~ 127 (276)
T 3jy6_A 78 VQEILHQ--------QMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQHVV 127 (276)
T ss_dssp HHHHHTT--------SSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHC--------CCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEE
Confidence 6666442 455666664221 11 13556888888899999999875
No 116
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=41.32 E-value=1.5e+02 Score=24.36 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=41.1
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.++|| .|++..+|..++..+...|..+..+ .+.....+.+.+++|+++. . |..+ ......+.+++
T Consensus 43 I~i~G--~G~S~~~A~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vi~iS~-s--G~t~-~~~~~~~~ak~ 107 (180)
T 1jeo_A 43 IFIFG--VGRSGYIGRCFAMRLMHLGFKSYFV--GETTTPSYEKDDLLILISG-S--GRTE-SVLTVAKKAKN 107 (180)
T ss_dssp EEEEC--CHHHHHHHHHHHHHHHHTTCCEEET--TSTTCCCCCTTCEEEEEES-S--SCCH-HHHHHHHHHHT
T ss_pred EEEEe--ecHHHHHHHHHHHHHHHcCCeEEEe--CCCccccCCCCCEEEEEeC-C--CCcH-HHHHHHHHHHH
Confidence 34455 4889999999999999888877654 3333344555665555544 3 4444 45666666543
No 117
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=40.67 E-value=17 Score=35.23 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=41.7
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCC
Q 015866 6 RNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE 54 (399)
Q Consensus 6 ~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~ 54 (399)
.+.+.|+-||.+| +...++++|.+.++++|.+..++-+++.++++|.+.
T Consensus 264 A~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF 313 (378)
T 3lzd_A 264 AKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGF 313 (378)
T ss_dssp CCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTS
T ss_pred CCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC
Confidence 5678999999988 567789999999999999999999999987766443
No 118
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=40.54 E-value=1.3e+02 Score=24.36 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=59.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-----------CcCCCC-CCCeEEEEeecCCCCCCchhHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-----------DARCLP-EEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-----------~~~~l~-~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
++|.|+ -.+.+..++...+++.|.+.|+++..++.+.. ++.+++ ..|+++++++ ++...
T Consensus 14 ~~IavI--Gas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-------~~~v~ 84 (145)
T 2duw_A 14 RTIALV--GASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-------SEAAW 84 (145)
T ss_dssp CCEEEE--SCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-------STHHH
T ss_pred CEEEEE--CcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-------HHHHH
Confidence 345444 23333456777788888888998666665431 234454 3566666654 23455
Q ss_pred HHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceee
Q 015866 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG 133 (399)
Q Consensus 75 ~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~ 133 (399)
..++.+... |.+..++-.| .+ .+.+.+.+++.|.+.+.|.+.+
T Consensus 85 ~v~~~~~~~--------g~~~i~i~~~--~~------~~~l~~~a~~~Gi~~igpnc~g 127 (145)
T 2duw_A 85 GVAQEAIAI--------GAKTLWLQLG--VI------NEQAAVLAREAGLSVVMDRCPA 127 (145)
T ss_dssp HHHHHHHHH--------TCCEEECCTT--CC------CHHHHHHHHTTTCEEECSCCHH
T ss_pred HHHHHHHHc--------CCCEEEEcCC--hH------HHHHHHHHHHcCCEEEcCCeee
Confidence 666555432 3333344333 12 5778888889999988776543
No 119
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=40.42 E-value=1.9e+02 Score=25.31 Aligned_cols=133 Identities=8% Similarity=0.004 Sum_probs=75.2
Q ss_pred ccCCeEEEEEEC--CCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC------cCCC--CCCCeEEEEeecCCCCCCchhH
Q 015866 4 EKRNKLLILYAS--QTGNALDAAERIGRESERRGCPVVVRPVDDYD------ARCL--PEEDTVIFVVSTTGQGDTPDSM 73 (399)
Q Consensus 4 ~~~~~v~IlY~S--~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~------~~~l--~~~~~ii~~~sT~g~G~~p~~~ 73 (399)
.+...|.|+..+ .......+.+.+.+.+.+.|+.+.++..+.-. .+.+ ...+.||+.... + +.
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~------~-~~ 81 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS------N-YD 81 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC------H-HH
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC------c-cc
Confidence 345678888874 34456788899999999999998776543111 1112 245666664321 1 12
Q ss_pred HHHHHHHHhccCCccccCCceEEEEecCCCCch----hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHH
Q 015866 74 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWM 149 (399)
Q Consensus 74 ~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~----~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~ 149 (399)
..+.+. . -.+..+.+++.-...+. ....+++.+-+.|.+.|.+++.= ..++.. ........
T Consensus 82 ~~~~~~---~------~~~iPvV~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~-i~~~~~-----~~~~~~R~ 146 (289)
T 3g85_A 82 LEYLNK---A------SLTLPIILFNRLSNKYSSVNVDNYKMGEKASLLFAKKRYKSAAA-ILTESL-----NDAMDNRN 146 (289)
T ss_dssp HHHHHH---C------CCSSCEEEESCCCSSSEEEEECHHHHHHHHHHHHHHTTCCBCEE-EECCCS-----SHHHHHHH
T ss_pred HHHHHh---c------cCCCCEEEECCCCCCCCEEEeCHHHHHHHHHHHHHHcCCCEEEE-EeCCcc-----cccHHHHH
Confidence 222221 1 13566666664322221 35567888888899999888742 233221 22344555
Q ss_pred HHHHHHHHh
Q 015866 150 RSLWRRLHQ 158 (399)
Q Consensus 150 ~~l~~~l~~ 158 (399)
+.+.+++.+
T Consensus 147 ~gf~~~l~~ 155 (289)
T 3g85_A 147 KGFIETCHK 155 (289)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667777754
No 120
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=39.58 E-value=39 Score=30.11 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEeC------CCCC-----cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCcccc
Q 015866 22 DAAERIGRESERRGCPVVVRPV------DDYD-----ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (399)
Q Consensus 22 ~~A~~l~~~l~~~g~~~~v~~l------~~~~-----~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l 90 (399)
.-+..+.+.|++.|+++..+.+ ++.. ..++.+++.|||.|+. ..+.|++.+..... .+
T Consensus 16 ~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~--------aV~~~~~~l~~~~~---~~ 84 (254)
T 4es6_A 16 EECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKP--------AARLGLERLDRYWP---QP 84 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHH--------HHHHHHHHHHHHCS---SC
T ss_pred HHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHH--------HHHHHHHHHHHhCC---Cc
Confidence 3456777888888977643332 2210 1234567766665543 36678888765421 23
Q ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 91 EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 91 ~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
+++++++.| ..-.+.|++.|.+..+
T Consensus 85 ~~~~i~aVG-------------~~Ta~~L~~~G~~~~~ 109 (254)
T 4es6_A 85 PQQTWCSVG-------------AATAAILEAYGLDVTY 109 (254)
T ss_dssp CSCEEEESS-------------HHHHHHHHHHTCCEEC
T ss_pred ccCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 456666665 2344567777877654
No 121
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=39.54 E-value=24 Score=33.42 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCeEEEEEE----CCCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 6 RNKLLILYA----SQTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 6 ~~~v~IlY~----S~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
.|+|+++-. ...|-++..+..+++.|.++|++|+++...
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~ 44 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPS 44 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 467766643 367999999999999999999999988754
No 122
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=39.20 E-value=2e+02 Score=25.30 Aligned_cols=131 Identities=17% Similarity=0.093 Sum_probs=74.8
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc-----CCC--CCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-----RCL--PEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~-----~~l--~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
+...|.|+.......-..+.+.+.+.+.+.|+.+.+.+.++-.. ..+ ...+.||+..... .+ ..+
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~---~~~ 82 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRF-----DT---DEL 82 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCC-----CH---HHH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCC-----CH---HHH
Confidence 44567777643344567788889999999999988877654211 112 2345666654332 11 344
Q ss_pred HHHHhccCCccccCCceEEEEecCCC--Cc----hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHHH
Q 015866 78 RFLLQKSLSKQWLEGVRYAVFGLGDS--GY----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRS 151 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~avfGlGds--~y----~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~~ 151 (399)
+.+.. +..+.+++.... .+ ...-.+++.+-+.|.++|.+++.= ..++.. . ....+.+.
T Consensus 83 ~~~~~---------~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~-i~~~~~----~--~~~~R~~G 146 (289)
T 3k9c_A 83 GALAD---------RVPALVVARASGLPGVGAVRGDDVAGITLAVDHLTELGHRNIAH-IDGADA----P--GGADRRAG 146 (289)
T ss_dssp HHHHT---------TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHHTTCCSEEE-ECCTTS----T--THHHHHHH
T ss_pred HHHHc---------CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCCcEEE-EeCCCC----c--cHHHHHHH
Confidence 44422 445666654211 11 134567788888888899888742 222221 2 55677777
Q ss_pred HHHHHHhh
Q 015866 152 LWRRLHQI 159 (399)
Q Consensus 152 l~~~l~~~ 159 (399)
+.+++.+.
T Consensus 147 f~~al~~~ 154 (289)
T 3k9c_A 147 FLAAMDRH 154 (289)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 88888643
No 123
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=38.53 E-value=29 Score=32.50 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=32.3
Q ss_pred ccCCeEEEEEEC---CCchHHHHHHHHHHHHHhcCCCcEEEeCCCC
Q 015866 4 EKRNKLLILYAS---QTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (399)
Q Consensus 4 ~~~~~v~IlY~S---~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~ 46 (399)
..+|+|+++-.. ..|.++..+..+++.|.+.|++|.++.....
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 63 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASP 63 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCT
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 457787777532 3388899999999999999999998887654
No 124
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=37.79 E-value=70 Score=31.25 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=63.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC---CCCCeEEEEeecCC--------CCC------C
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL---PEEDTVIFVVSTTG--------QGD------T 69 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l---~~~~~ii~~~sT~g--------~G~------~ 69 (399)
.+|.|+ |+..| .....|.+.|++.|+++..+--.+ +.+++ .+..+-|+++++.+ .|. .
T Consensus 184 ~~VNil-G~~~~---~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~~A~~niv~~~~~~~~A~~Le~~GiP~i~~~~ 258 (437)
T 3aek_A 184 AELIVV-GALPD---VVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVGPNTRFILAQPFLGETTGALERRGAKRIAAPF 258 (437)
T ss_dssp CCEEEE-SCCCH---HHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBCTTCEEEESSTTCHHHHHHHHHTTCEECCCCC
T ss_pred CcEEEE-eCCCh---hHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhhcCcEEEEECccHHHHHHHHHHcCCCeEecCC
Confidence 444444 45544 334778888888999987554433 55555 45666666666532 121 1
Q ss_pred c---hhHHHHHHHHHhcc-----------------------CCccccCCceEEEEecCCCCchhHHHHHHHHHHHH-HhC
Q 015866 70 P---DSMKVFWRFLLQKS-----------------------LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRL-LDL 122 (399)
Q Consensus 70 p---~~~~~f~~~L~~~~-----------------------~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L-~~l 122 (399)
| ++..+|++.|.+.- .....+.|++++|+|-++.. ..+.+.| .++
T Consensus 259 P~G~~~T~~~l~~la~~~g~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~--------~~l~~~L~~el 330 (437)
T 3aek_A 259 PFGEEGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLE--------IPLARFLAREC 330 (437)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCH--------HHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHH--------HHHHHHHHHHc
Confidence 1 23444544443210 01124789999999865443 3566778 899
Q ss_pred CCeeec
Q 015866 123 GATAVV 128 (399)
Q Consensus 123 Ga~~~~ 128 (399)
|++.+.
T Consensus 331 G~~vv~ 336 (437)
T 3aek_A 331 GMKTTE 336 (437)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998864
No 125
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=37.72 E-value=26 Score=30.96 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCcEEEeC------CCCC--cCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCCccccCCceE
Q 015866 24 AERIGRESERRGCPVVVRPV------DDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRY 95 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~v~~l------~~~~--~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~ 95 (399)
+..+++.|++.|+++..+.+ ++.+ ...+.+++.+||.|+. ..+.|++.+.. .+.++++
T Consensus 13 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~--------aV~~~~~~l~~------~l~~~~~ 78 (240)
T 3mw8_A 13 NAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTS--------AVSFATPWLKD------QWPKATY 78 (240)
T ss_dssp CHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHH--------HHHHHHHHHTT------CCCSSEE
T ss_pred hHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHH--------HHHHHHHHHHh------hCcCCeE
Confidence 34566667777877643332 2211 0124567766665543 36667777642 2556777
Q ss_pred EEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 96 AVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 96 avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
++.| ..-.+.|++.|.+.
T Consensus 79 ~aVG-------------~~Ta~~L~~~G~~~ 96 (240)
T 3mw8_A 79 YAVG-------------DATADALALQGITA 96 (240)
T ss_dssp EESS-------------HHHHHHHHHTTCCC
T ss_pred EEEC-------------HHHHHHHHHcCCCC
Confidence 6666 34456788889765
No 126
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=37.52 E-value=33 Score=26.78 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCeEEEEEECCCch--HHHHHHHHHHHHHhcCCCcEEE--e----CCCCCcCCCCCCCeEEEEeec
Q 015866 6 RNKLLILYASQTGN--ALDAAERIGRESERRGCPVVVR--P----VDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 6 ~~~v~IlY~S~tG~--te~~A~~l~~~l~~~g~~~~v~--~----l~~~~~~~l~~~~~ii~~~sT 63 (399)
.|+++.+=+.-||- |-..|+.|.+.+++.|+++.+- . -+.++.+++...+.|||.+.+
T Consensus 2 ~~kivaVTaCptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r4q_A 2 NAKILAVTACPTGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK 67 (106)
T ss_dssp -CCEEEEEECSCC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 46788888888885 4566899999999999987652 1 133445566778888888654
No 127
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=37.05 E-value=24 Score=33.69 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=31.1
Q ss_pred ccCCeEEEEEEC----------CCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 4 EKRNKLLILYAS----------QTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 4 ~~~~~v~IlY~S----------~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
.++|+|+++-.. ..|-.+..+..+++.|.+.|++|.++....
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~ 69 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRAT 69 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 457887777432 468899999999999999999999887654
No 128
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=36.74 E-value=34 Score=32.24 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=28.0
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| .+|+.+.++|+.+|.+.++
T Consensus 133 ~~l~gktvGIiGlG--------~IG~~vA~~l~~~G~~V~~ 165 (324)
T 3evt_A 133 STLTGQQLLIYGTG--------QIGQSLAAKASALGMHVIG 165 (324)
T ss_dssp CCSTTCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeEEEECcC--------HHHHHHHHHHHhCCCEEEE
Confidence 35889999999986 5788999999999997753
No 129
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=36.63 E-value=2e+02 Score=25.55 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=75.1
Q ss_pred cCCeEEEEEEC------CCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc------CCC--CCCCeEEEEeecCCCCCCc
Q 015866 5 KRNKLLILYAS------QTGNALDAAERIGRESERRGCPVVVRPVDDYDA------RCL--PEEDTVIFVVSTTGQGDTP 70 (399)
Q Consensus 5 ~~~~v~IlY~S------~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~------~~l--~~~~~ii~~~sT~g~G~~p 70 (399)
+...|.|+..+ ....-..+.+.+.+.+.+.|+.+.+.+.+.-.. +.+ ...+.||+..+.. .
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~---- 95 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLK-D---- 95 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBT-T----
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcC-C----
Confidence 44567777665 233457788888889999999887766543110 011 3566777644332 1
Q ss_pred hhHHHHHHHHHhccCCccccCCceEEEEecCCC----Cc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccc
Q 015866 71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS----GY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGA 144 (399)
Q Consensus 71 ~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds----~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~ 144 (399)
+ ..++.+... +..+.+++.... .| .....+++.+.+.|.++|.+++. ...++.. ...
T Consensus 96 ~---~~~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~-~i~~~~~-----~~~ 158 (305)
T 3huu_A 96 D---PIEHLLNEF--------KVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHIL-FLQESGH-----YAV 158 (305)
T ss_dssp C---HHHHHHHHT--------TCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHHTTCCSEE-EEEESSC-----BHH
T ss_pred c---HHHHHHHHc--------CCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHHCCCCeEE-EEcCCcc-----cch
Confidence 1 345555432 455666664321 11 13456778888888899988874 3333322 223
Q ss_pred hhhHHHHHHHHHHh
Q 015866 145 LDPWMRSLWRRLHQ 158 (399)
Q Consensus 145 ~~~W~~~l~~~l~~ 158 (399)
.....+.+.+++.+
T Consensus 159 ~~~R~~Gf~~~l~~ 172 (305)
T 3huu_A 159 TEDRSVGFKQYCDD 172 (305)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34445666777754
No 130
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=36.35 E-value=34 Score=32.58 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| .+|+.+.++|+.+|.+.++
T Consensus 169 ~~l~gktvGIIGlG--------~IG~~vA~~l~~~G~~V~~ 201 (345)
T 4g2n_A 169 MGLTGRRLGIFGMG--------RIGRAIATRARGFGLAIHY 201 (345)
T ss_dssp CCCTTCEEEEESCS--------HHHHHHHHHHHTTTCEEEE
T ss_pred cccCCCEEEEEEeC--------hhHHHHHHHHHHCCCEEEE
Confidence 35889999999986 5789999999999987653
No 131
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=36.34 E-value=16 Score=30.82 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=33.8
Q ss_pred cCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 90 l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
.+..+++|+-.||.--..++.-+..+.++|+++|++...-....|+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd 56 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD 56 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC
Confidence 4568999999999863345667778999999999987654444444
No 132
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=36.22 E-value=34 Score=32.61 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=27.7
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| .+|+.+.++|+.+|++.++
T Consensus 156 ~~l~g~tvGIIGlG--------~IG~~vA~~l~~~G~~V~~ 188 (352)
T 3gg9_A 156 RVLKGQTLGIFGYG--------KIGQLVAGYGRAFGMNVLV 188 (352)
T ss_dssp CCCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCEEEEEeEC--------HHHHHHHHHHHhCCCEEEE
Confidence 35789999999986 5788899999999987653
No 133
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=36.07 E-value=9.3 Score=32.33 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=32.2
Q ss_pred cCCceEEEEecCCCCch--hHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 90 LEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 90 l~~~~~avfGlGds~y~--~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
.+..+++|+-.||.-+. -++..+..+.++|+++|++...-....|+
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd 52 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG 52 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH
Confidence 45679999999987542 35566788899999999988754444454
No 134
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=35.99 E-value=1.8e+02 Score=23.90 Aligned_cols=65 Identities=17% Similarity=0.063 Sum_probs=41.1
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.++|| .|++..+|..++..|...|..+..+ .+.....+...+++|+++ .. |..+ ......+.+++
T Consensus 40 I~i~G--~G~S~~~A~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vI~iS-~s--G~t~-~~~~~~~~ak~ 104 (186)
T 1m3s_A 40 IFTAG--AGRSGLMAKSFAMRLMHMGFNAHIV--GEILTPPLAEGDLVIIGS-GS--GETK-SLIHTAAKAKS 104 (186)
T ss_dssp EEEEC--SHHHHHHHHHHHHHHHHTTCCEEET--TSTTCCCCCTTCEEEEEC-SS--SCCH-HHHHHHHHHHH
T ss_pred EEEEe--cCHHHHHHHHHHHHHHhcCCeEEEe--CcccccCCCCCCEEEEEc-CC--CCcH-HHHHHHHHHHH
Confidence 34455 4888999999999999889877654 343334455556555444 44 4433 46666666654
No 135
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=35.89 E-value=83 Score=27.81 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=55.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCC-----CCCCeEEEEeecCCCCCCchhHHHHHHHHHhccC
Q 015866 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (399)
Q Consensus 11 IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l-----~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~ 85 (399)
+++++ ||+. .+...|++.++ +|+.|.++|-.+. .++ .+.+.+.+..||- |.-|.-++..-+.|... +
T Consensus 94 LVIaA-T~d~-~~N~~I~~~ak-~gi~VNvvD~p~~--~~f~~Paiv~rg~l~iaIST~--G~sP~la~~iR~~ie~~-l 165 (223)
T 3dfz_A 94 FIVVA-TNDQ-AVNKFVKQHIK-NDQLVNMASSFSD--GNIQIPAQFSRGRLSLAISTD--GASPLLTKRIKEDLSSN-Y 165 (223)
T ss_dssp EEEEC-CCCT-HHHHHHHHHSC-TTCEEEC-----C--CSEECCEEEEETTEEEEEECT--TSCHHHHHHHHHHHHHH-S
T ss_pred EEEEC-CCCH-HHHHHHHHHHh-CCCEEEEeCCccc--CeEEEeeEEEeCCEEEEEECC--CCCcHHHHHHHHHHHHH-c
Confidence 44444 6665 55677777765 7876655543222 221 2334577888875 67788888888877653 1
Q ss_pred CccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCC
Q 015866 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG 123 (399)
Q Consensus 86 ~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lG 123 (399)
| .+|+.+......+.+++++..
T Consensus 166 p----------------~~~~~~~~~~~~~R~~vk~~~ 187 (223)
T 3dfz_A 166 D----------------ESYTQYTQFLYECRVLIHRLN 187 (223)
T ss_dssp C----------------THHHHHHHHHHHHHHHHHHCC
T ss_pred c----------------HHHHHHHHHHHHHHHHHHHHC
Confidence 1 247888888888888888754
No 136
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=35.77 E-value=57 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=33.4
Q ss_pred cccCCeEEEEEECC--CchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 3 EEKRNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 3 ~~~~~~v~IlY~S~--tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
++.+++++|+..|- +......|-.++..+.+.|++|.++=..+
T Consensus 12 ~~~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~d 56 (134)
T 3mc3_A 12 EEQXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIX 56 (134)
T ss_dssp --CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 34568899999887 66777788899988888899998876654
No 137
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=35.70 E-value=21 Score=30.92 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=24.0
Q ss_pred CccccCCeEEEEEECCCchHH---HHHHHHHHHHHhcCCC
Q 015866 1 MREEKRNKLLILYASQTGNAL---DAAERIGRESERRGCP 37 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~tG~te---~~A~~l~~~l~~~g~~ 37 (399)
|+.+.+++|.|+=+|. |+.. +.|+++.+.|.++|+.
T Consensus 8 ~~~~~~~~I~Vfg~s~-~~~~~~~~~A~~lg~~la~~g~~ 46 (189)
T 3sbx_A 8 SDEPGRWTVAVYCAAA-PTHPELLELAGAVGAAIAARGWT 46 (189)
T ss_dssp -----CCEEEEECCSS-CCCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCCCeEEEEEEeCC-CCChHHHHHHHHHHHHHHHCCCE
Confidence 4556677888776677 7766 4589999999888764
No 138
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=35.63 E-value=2.4e+02 Score=25.26 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=70.4
Q ss_pred CccccCCeEEEEEECCCchHHHHHHHHHHHHHhc-CCCcEEEeCCCCCcC-------CC--CCCCeEEEEeecCCCCCCc
Q 015866 1 MREEKRNKLLILYASQTGNALDAAERIGRESERR-GCPVVVRPVDDYDAR-------CL--PEEDTVIFVVSTTGQGDTP 70 (399)
Q Consensus 1 ~~~~~~~~v~IlY~S~tG~te~~A~~l~~~l~~~-g~~~~v~~l~~~~~~-------~l--~~~~~ii~~~sT~g~G~~p 70 (399)
|++.+...|.|+..+.......+.+.+.+.+.+. |+.+.+.+.+. +.+ .+ ...+.||+.. +. +
T Consensus 1 ~~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~-~~-----~ 73 (325)
T 2x7x_A 1 MDDTPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGD-DNSKQAEDVHYFMDEGVDLLIISA-NE-----A 73 (325)
T ss_dssp -----CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECC-SS-----H
T ss_pred CCCCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEeC-CC-----H
Confidence 6677777888887662222345677788888888 99888776543 211 11 3466666542 21 1
Q ss_pred hhHHHHHHHHHhccCCccccCCceEEEEecCCC---C--c--hhHHHHHHHHHHHHHhC--CCeeeccceeecCCCCCCc
Q 015866 71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS---G--Y--QKFNFVAKKLDNRLLDL--GATAVVERGLGDDQHPSGY 141 (399)
Q Consensus 71 ~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds---~--y--~~f~~~~k~l~~~L~~l--Ga~~~~~~~~~D~~~~~g~ 141 (399)
+.....++.+... +..+.+++.... . | .....+++.+.+.|.++ |.+++. ...++..
T Consensus 74 ~~~~~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~-~i~~~~~----- 139 (325)
T 2x7x_A 74 APMTPIVEEAYQK--------GIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIASSLKGKGNIV-ELTGLSG----- 139 (325)
T ss_dssp HHHHHHHHHHHHT--------TCCEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEE-EEESCTT-----
T ss_pred HHHHHHHHHHHHC--------CCeEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHHHcCCCceEE-EEECCCC-----
Confidence 2233455555432 445555553211 1 1 12345667777777774 877764 2233221
Q ss_pred ccchhhHHHHHHHHHHh
Q 015866 142 EGALDPWMRSLWRRLHQ 158 (399)
Q Consensus 142 ~~~~~~W~~~l~~~l~~ 158 (399)
......+.+.+.+++.+
T Consensus 140 ~~~~~~R~~Gf~~al~~ 156 (325)
T 2x7x_A 140 STPAMERHQGFMAAISK 156 (325)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh
Confidence 12344556667777753
No 139
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=35.43 E-value=7.7 Score=33.32 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=34.3
Q ss_pred ccCCceEEEEecCCCCc-------hhHHHHHHHHHHHHHhCCCeeeccceeecC
Q 015866 89 WLEGVRYAVFGLGDSGY-------QKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y-------~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~ 135 (399)
..+..+++|+-.||.-+ .-++..+..+.++|+++|++...-....|+
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd 65 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD 65 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC
Confidence 45678999999999654 235667788999999999987654444444
No 140
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=35.11 E-value=37 Score=31.96 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.6
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+.|++++|+|+| .+|+.+.++|+.+|.+.+
T Consensus 136 ~~l~g~tvGIIGlG--------~IG~~vA~~l~~~G~~V~ 167 (324)
T 3hg7_A 136 QGLKGRTLLILGTG--------SIGQHIAHTGKHFGMKVL 167 (324)
T ss_dssp CCSTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred cccccceEEEEEEC--------HHHHHHHHHHHhCCCEEE
Confidence 36889999999986 578899999999998875
No 141
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=34.65 E-value=2.1e+02 Score=24.14 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=41.9
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 10 ~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+++|| .|++..+|+.++..+...|..+..+ .+.....+...+++|+++ .. |..+ ......+.+++
T Consensus 50 I~i~G--~G~S~~~A~~~~~~l~~~g~~~~~~--~~~~~~~~~~~DvvI~iS-~S--G~t~-~~i~~~~~ak~ 114 (200)
T 1vim_A 50 IFVIG--AGRSGYIAKAFAMRLMHLGYTVYVV--GETVTPRITDQDVLVGIS-GS--GETT-SVVNISKKAKD 114 (200)
T ss_dssp EEEEC--SHHHHHHHHHHHHHHHHTTCCEEET--TSTTCCCCCTTCEEEEEC-SS--SCCH-HHHHHHHHHHH
T ss_pred EEEEE--ecHHHHHHHHHHHHHHhcCCeEEEe--CCccccCCCCCCEEEEEe-CC--CCcH-HHHHHHHHHHH
Confidence 45565 5889999999999999888877654 333333455566555554 33 4444 46666666654
No 142
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=34.40 E-value=34 Score=31.67 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=26.7
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|.+.+
T Consensus 119 ~l~g~tvGIIGlG--------~IG~~vA~~l~~~G~~V~ 149 (290)
T 3gvx_A 119 LLYGKALGILGYG--------GIGRRVAHLAKAFGMRVI 149 (290)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHHHTCEEE
T ss_pred eeecchheeeccC--------chhHHHHHHHHhhCcEEE
Confidence 5889999999987 578888999999998765
No 143
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=33.95 E-value=31 Score=32.57 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=27.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|.+.+
T Consensus 138 ~l~g~tvgIiG~G--------~IG~~vA~~l~~~G~~V~ 168 (334)
T 2pi1_A 138 ELNRLTLGVIGTG--------RIGSRVAMYGLAFGMKVL 168 (334)
T ss_dssp CGGGSEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred eccCceEEEECcC--------HHHHHHHHHHHHCcCEEE
Confidence 5789999999986 578999999999998765
No 144
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=33.95 E-value=35 Score=31.93 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.8
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| ..|+.+.++|+.+|.+.++
T Consensus 135 ~~l~g~tvGIiG~G--------~IG~~vA~~l~~~G~~V~~ 167 (315)
T 3pp8_A 135 YTREEFSVGIMGAG--------VLGAKVAESLQAWGFPLRC 167 (315)
T ss_dssp CCSTTCCEEEECCS--------HHHHHHHHHHHTTTCCEEE
T ss_pred CCcCCCEEEEEeeC--------HHHHHHHHHHHHCCCEEEE
Confidence 35889999999987 5788999999999987753
No 145
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=33.88 E-value=48 Score=31.26 Aligned_cols=41 Identities=7% Similarity=0.051 Sum_probs=32.8
Q ss_pred cCCeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 5 KRNKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 5 ~~~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
++|+|+++-.+. .|-++..+..+++.|.+.|++|.++....
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~ 80 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEG 80 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 357787775553 58899999999999999999998877653
No 146
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=33.64 E-value=2.4e+02 Score=24.67 Aligned_cols=134 Identities=10% Similarity=-0.006 Sum_probs=71.9
Q ss_pred cccCCeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc---------CCC--CCCCeEEEEeecCCCCCCc
Q 015866 3 EEKRNKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDYDA---------RCL--PEEDTVIFVVSTTGQGDTP 70 (399)
Q Consensus 3 ~~~~~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~---------~~l--~~~~~ii~~~sT~g~G~~p 70 (399)
+.+...|.++.... ...-..+.+.+.+.+++.|+.+.+.+.+.-.. +.+ ...+.+|+..... +
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~ 79 (290)
T 2rgy_A 5 TQQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL-----H 79 (290)
T ss_dssp ---CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS-----C
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC-----C
Confidence 34455676666443 22345677888888889999888776543110 111 2456666643322 1
Q ss_pred hhHHHHHHHHHhccCCccccCCceEEEEecCCCC--ch----hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccc
Q 015866 71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG--YQ----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGA 144 (399)
Q Consensus 71 ~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~--y~----~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~ 144 (399)
+ ..++.+... +..+.+++..... +. ..-.+++.+-+.|.++|.+++. ...++.. ...
T Consensus 80 ~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~-~i~~~~~-----~~~ 142 (290)
T 2rgy_A 80 D---EDLDELHRM--------HPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEHGHRKLA-VISGPFT-----ASD 142 (290)
T ss_dssp H---HHHHHHHHH--------CSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHTTCCSEE-EEESCTT-----CHH
T ss_pred H---HHHHHHhhc--------CCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCceEE-EEeCCCC-----Ccc
Confidence 1 234445432 3445555532111 11 2345777888888888988764 2223221 223
Q ss_pred hhhHHHHHHHHHHh
Q 015866 145 LDPWMRSLWRRLHQ 158 (399)
Q Consensus 145 ~~~W~~~l~~~l~~ 158 (399)
...+.+.+.+++.+
T Consensus 143 ~~~R~~Gf~~al~~ 156 (290)
T 2rgy_A 143 NVERLDGFFDELAR 156 (290)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777777764
No 147
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=32.99 E-value=2.6e+02 Score=24.74 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=75.7
Q ss_pred cCCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC--CCCCeEEEEeecCCCCCCchhHHH
Q 015866 5 KRNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDSMKV 75 (399)
Q Consensus 5 ~~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l--~~~~~ii~~~sT~g~G~~p~~~~~ 75 (399)
+...|.|+..+.+. .-..+.+.+.+.+.+.|+.+.+.+.+.-... .+ ...+.||+..... . +. .
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~----~~--~ 86 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED-F----DD--D 86 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT-C----CH--H
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC-C----cH--H
Confidence 34567777665443 5678889999999999999988876542211 11 3566777654432 1 11 1
Q ss_pred HHHHHHhccCCccccCCceEEEEecCCC-Cc----hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHH
Q 015866 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDS-GY----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMR 150 (399)
Q Consensus 76 f~~~L~~~~~~~~~l~~~~~avfGlGds-~y----~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~ 150 (399)
.++.+.. +..+.+++.... .+ ...-.+++.+.+.|.++|.+++. ...++.. ......+.+
T Consensus 87 ~~~~l~~---------~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~-~i~~~~~-----~~~~~~R~~ 151 (303)
T 3kke_A 87 MLAAVLE---------GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLITLGHSRIA-FISGTAI-----HDTAQRRKE 151 (303)
T ss_dssp HHHHHHT---------TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHHTTCCSEE-EEESCSS-----CHHHHHHHH
T ss_pred HHHHHhC---------CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHHCCCCeEE-EEeCCCc-----CccHHHHHH
Confidence 4445432 344555553221 11 13456778888888889988874 2223222 234556667
Q ss_pred HHHHHHHh
Q 015866 151 SLWRRLHQ 158 (399)
Q Consensus 151 ~l~~~l~~ 158 (399)
.+.+++.+
T Consensus 152 Gf~~al~~ 159 (303)
T 3kke_A 152 GYLETLAS 159 (303)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777754
No 148
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=32.81 E-value=62 Score=30.96 Aligned_cols=31 Identities=48% Similarity=0.532 Sum_probs=26.6
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.|.|++++|.|+| .++..+.+.|.++|++.+
T Consensus 170 ~L~GktV~V~G~G--------~VG~~~A~~L~~~GakVv 200 (364)
T 1leh_A 170 SLEGLAVSVQGLG--------NVAKALCKKLNTEGAKLV 200 (364)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCcCEEEEECch--------HHHHHHHHHHHHCCCEEE
Confidence 5899999999987 367888888999999865
No 149
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=32.74 E-value=43 Score=29.64 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=30.9
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
.+.|++.+.....+.+|+.|.+.|++.|+++++..++
T Consensus 129 ~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~~~ 165 (258)
T 3lvu_A 129 ALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEKVD 165 (258)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEEecC
Confidence 5667777766678899999999999999999887664
No 150
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=32.42 E-value=43 Score=31.72 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=27.1
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+.|++++|+|+| .+|+.+.++|..+|.+.+
T Consensus 167 ~~l~gktiGIIGlG--------~IG~~vA~~l~~~G~~V~ 198 (340)
T 4dgs_A 167 HSPKGKRIGVLGLG--------QIGRALASRAEAFGMSVR 198 (340)
T ss_dssp CCCTTCEEEEECCS--------HHHHHHHHHHHTTTCEEE
T ss_pred ccccCCEEEEECCC--------HHHHHHHHHHHHCCCEEE
Confidence 35889999999986 578899999999998765
No 151
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=32.42 E-value=34 Score=32.48 Aligned_cols=31 Identities=13% Similarity=0.355 Sum_probs=26.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|++.+
T Consensus 145 ~l~gktvgIiGlG--------~IG~~vA~~l~~~G~~V~ 175 (343)
T 2yq5_A 145 EIYNLTVGLIGVG--------HIGSAVAEIFSAMGAKVI 175 (343)
T ss_dssp CGGGSEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred ccCCCeEEEEecC--------HHHHHHHHHHhhCCCEEE
Confidence 5789999999986 578899999999998765
No 152
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=32.17 E-value=35 Score=32.17 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=26.8
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|++.+
T Consensus 142 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~ 172 (333)
T 1dxy_A 142 ELGQQTVGVMGTG--------HIGQVAIKLFKGFGAKVI 172 (333)
T ss_dssp CGGGSEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEECcC--------HHHHHHHHHHHHCCCEEE
Confidence 5789999999986 578889999999998865
No 153
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.12 E-value=91 Score=23.85 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=27.9
Q ss_pred cCCeEEEEEECCCchHHH--HHHHHHHHHHhcCCCcEEEeCCC
Q 015866 5 KRNKLLILYASQTGNALD--AAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~--~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
..|+|.|+..+..+.++. -.+++.+.|.+.|++.+.+|++.
T Consensus 6 ~~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~ 48 (111)
T 2ct6_A 6 SGMVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM 48 (111)
T ss_dssp CCCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT
T ss_pred CccEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCC
Confidence 356788777788888773 22345556667888877777764
No 154
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=32.00 E-value=37 Score=32.55 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.7
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| ..|+.+.++++.+|.+.++
T Consensus 172 ~~l~gktvGIIGlG--------~IG~~vA~~l~~fG~~V~~ 204 (365)
T 4hy3_A 172 RLIAGSEIGIVGFG--------DLGKALRRVLSGFRARIRV 204 (365)
T ss_dssp CCSSSSEEEEECCS--------HHHHHHHHHHTTSCCEEEE
T ss_pred cccCCCEEEEecCC--------cccHHHHHhhhhCCCEEEE
Confidence 35789999999986 5788999999999987763
No 155
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=31.94 E-value=45 Score=31.52 Aligned_cols=32 Identities=22% Similarity=0.548 Sum_probs=27.1
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+.|++++|+|+| ..|+.+.++|+.+|++.+
T Consensus 161 ~~l~g~tvgIIGlG--------~IG~~vA~~l~~~G~~V~ 192 (335)
T 2g76_A 161 TELNGKTLGILGLG--------RIGREVATRMQSFGMKTI 192 (335)
T ss_dssp CCCTTCEEEEECCS--------HHHHHHHHHHHTTTCEEE
T ss_pred cCCCcCEEEEEeEC--------HHHHHHHHHHHHCCCEEE
Confidence 35889999999986 578889999999998764
No 156
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=31.76 E-value=45 Score=31.67 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=27.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|..+|++.+
T Consensus 165 ~l~g~tvGIIG~G--------~IG~~vA~~l~~~G~~V~ 195 (347)
T 1mx3_A 165 RIRGETLGIIGLG--------RVGQAVALRAKAFGFNVL 195 (347)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEeEC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999986 578899999999998765
No 157
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=31.61 E-value=46 Score=30.90 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.0
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+.|++++|+|+| ..|+.+.++|+.+|++.+
T Consensus 138 ~~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~ 169 (307)
T 1wwk_A 138 IELEGKTIGIIGFG--------RIGYQVAKIANALGMNIL 169 (307)
T ss_dssp CCCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred cccCCceEEEEccC--------HHHHHHHHHHHHCCCEEE
Confidence 36889999999986 578889999999998764
No 158
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=31.57 E-value=44 Score=30.57 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcC---------CCCCCC-eEEEEeecCCCCCCchhHHHHHHHHHhccCCccc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR---------CLPEED-TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~---------~l~~~~-~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~~~~ 89 (399)
...+|++|++.|.+.|+.+.. .+...+ ..++.+ .||-++-.. +..|....++=+.|..
T Consensus 94 ~peLA~~i~~~l~~~g~~~~~---~~~glDHG~~vPL~~m~p~adiPVVqlSi~~--~~~p~~~~~lG~aL~~------- 161 (271)
T 2pw6_A 94 SPALAQRLVELLAPIPVTLDK---EAWGFDHGSWGVLIKMYPDADIPMVQLSIDS--SKPAAWHFEMGRKLAA------- 161 (271)
T ss_dssp CHHHHHHHHHHHTTSCEEEES---SCCCCCHHHHHHHHHHSTTCCSCEEEEEEET--TSCHHHHHHHHHHHGG-------
T ss_pred CHHHHHHHHHHHHhcCCcccc---cccCCCcchhhhHHHhcCCCCCCEEEEeCCC--CCCHHHHHHHHHHHHH-------
Confidence 357899999999998875432 221111 012333 244333332 3456666777777743
Q ss_pred cCCceEEEEecCCCCc
Q 015866 90 LEGVRYAVFGLGDSGY 105 (399)
Q Consensus 90 l~~~~~avfGlGds~y 105 (399)
++..+++|+|+|+.+.
T Consensus 162 lrd~~VlIigSG~lsH 177 (271)
T 2pw6_A 162 LRDEGIMLVASGNVVH 177 (271)
T ss_dssp GGGGTEEEEEEECSSC
T ss_pred HHHcCcEEEEeCcccc
Confidence 4567899999998765
No 159
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=31.48 E-value=47 Score=31.72 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=26.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|.|+| .++..+.+.|..+|++.+
T Consensus 172 ~L~GktV~I~G~G--------nVG~~~A~~l~~~GakVv 202 (355)
T 1c1d_A 172 SLDGLTVLVQGLG--------AVGGSLASLAAEAGAQLL 202 (355)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEECcC--------HHHHHHHHHHHHCCCEEE
Confidence 5899999999986 356777788899999876
No 160
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=31.36 E-value=37 Score=31.96 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.5
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|++.+
T Consensus 143 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~ 173 (331)
T 1xdw_A 143 EVRNCTVGVVGLG--------RIGRVAAQIFHGMGATVI 173 (331)
T ss_dssp CGGGSEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEECcC--------HHHHHHHHHHHHCCCEEE
Confidence 4788999999986 578889999999998865
No 161
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=31.26 E-value=40 Score=32.08 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=27.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|++.+
T Consensus 161 ~l~gktvGIIG~G--------~IG~~vA~~l~~~G~~V~ 191 (351)
T 3jtm_A 161 DLEGKTIGTVGAG--------RIGKLLLQRLKPFGCNLL 191 (351)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHHGGGCCEEE
T ss_pred cccCCEEeEEEeC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999987 578899999999998854
No 162
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=31.23 E-value=45 Score=29.27 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=46.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeC---C--CCCcC---CC--CCCCeEEEEeecCCCCCCchhHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPV---D--DYDAR---CL--PEEDTVIFVVSTTGQGDTPDSMKV 75 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l---~--~~~~~---~l--~~~~~ii~~~sT~g~G~~p~~~~~ 75 (399)
+++++++-|.. | ...|.+.|+++|+.+.-+.+ . +.+.. .+ ...+.|+|.|++ .++.
T Consensus 110 ~~~vL~~rg~~-~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ftS~s--------~v~~ 175 (229)
T 3p9z_A 110 KKSVLYLRAKE-I-----VSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAIS--------HAKA 175 (229)
T ss_dssp TCEEEEEEESS-C-----SSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHH--------HHHH
T ss_pred CCEEEEECCcc-c-----hHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEECHH--------HHHH
Confidence 45665555533 2 24455667778877643322 1 11110 11 235555554443 4677
Q ss_pred HHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 76 f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
|++.+. .+.+.+++++| ....+.|+++|.+.
T Consensus 176 ~~~~~~-------~~~~~~~~aIG-------------~~Ta~~l~~~G~~v 206 (229)
T 3p9z_A 176 FLHYFE-------FLENYTAISIG-------------NTTALYLQEQGIPS 206 (229)
T ss_dssp HHHHSC-------CCTTCEEEESS-------------HHHHHHHHHTTCCE
T ss_pred HHHHhC-------cccCCEEEEEC-------------HHHHHHHHHcCCCc
Confidence 777651 24566666655 45667788889764
No 163
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=30.64 E-value=48 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.1
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+.|++++|+|+| .+|+.+.++|+.+|++.+
T Consensus 138 ~~l~g~~vgIIG~G--------~IG~~~A~~l~~~G~~V~ 169 (313)
T 2ekl_A 138 LELAGKTIGIVGFG--------RIGTKVGIIANAMGMKVL 169 (313)
T ss_dssp CCCTTCEEEEESCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCEEEEEeeC--------HHHHHHHHHHHHCCCEEE
Confidence 35889999999986 578889999999998764
No 164
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=30.57 E-value=35 Score=32.12 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.7
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|++.+
T Consensus 142 ~l~g~tvGIIG~G--------~IG~~vA~~l~~~G~~V~ 172 (330)
T 4e5n_A 142 GLDNATVGFLGMG--------AIGLAMADRLQGWGATLQ 172 (330)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHTTTSCCEEE
T ss_pred ccCCCEEEEEeeC--------HHHHHHHHHHHHCCCEEE
Confidence 5789999999986 578899999999998765
No 165
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=30.52 E-value=1e+02 Score=30.29 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=37.1
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-c-CCCCCCCeEEEEee
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-A-RCLPEEDTVIFVVS 62 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-~-~~l~~~~~ii~~~s 62 (399)
++.|++.+.....+.+|+.|++.|++.|+++++..++... . ..-.++++.+..-.
T Consensus 331 ~l~l~~~~~~~~~~~~a~~i~~~l~~iGI~v~i~~~~~~~~~~~~~~~~d~~~~~~~ 387 (496)
T 3t66_A 331 HFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNV 387 (496)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTCTTCCEEEEEEE
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEEEeccHHHHHhhCCCccEEEEccC
Confidence 4556665555566889999999999999999988876431 1 11234666655443
No 166
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=30.36 E-value=39 Score=32.68 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=28.1
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| .+|+.+.++|+.+|.+.++
T Consensus 115 ~~l~gktvGIIGlG--------~IG~~vA~~l~a~G~~V~~ 147 (381)
T 3oet_A 115 FSLRDRTIGIVGVG--------NVGSRLQTRLEALGIRTLL 147 (381)
T ss_dssp CCGGGCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred CccCCCEEEEEeEC--------HHHHHHHHHHHHCCCEEEE
Confidence 35889999999987 5789999999999988753
No 167
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=30.29 E-value=50 Score=25.74 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=42.2
Q ss_pred CCeEEEEEECCCchHH--HHHHHHHHHHHhcCCCcEEE--e----CCCCCcCCCCCCCeEEEEeec
Q 015866 6 RNKLLILYASQTGNAL--DAAERIGRESERRGCPVVVR--P----VDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te--~~A~~l~~~l~~~g~~~~v~--~----l~~~~~~~l~~~~~ii~~~sT 63 (399)
.|+++.+=+.-||-+. ..|+.|.+..++.|+++.+- . -+.++.+++...+.|||.+.+
T Consensus 2 ~~kivaVTaCptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r48_A 2 NAKLLAITSCPNGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR 67 (106)
T ss_dssp CCEEEEEEECSSCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 4688888999999655 56899999999999886552 1 133445566778888887654
No 168
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=30.11 E-value=94 Score=28.94 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
|.-+| ..-|.+.|.+.. ..++++++.|+|.| ++++.+...|.+.|++.+
T Consensus 127 G~NTD-~~Gf~~~L~~~~---~~l~gk~~lVlGAG--------Gaaraia~~L~~~G~~~v 175 (312)
T 3t4e_A 127 GYNTD-GTGHIRAIKESG---FDMRGKTMVLLGAG--------GAATAIGAQAAIEGIKEI 175 (312)
T ss_dssp EECHH-HHHHHHHHHHTT---CCCTTCEEEEECCS--------HHHHHHHHHHHHTTCSEE
T ss_pred EeCCc-HHHHHHHHHhcC---CCcCCCEEEEECcC--------HHHHHHHHHHHHcCCCEE
Confidence 44443 778999987643 24789999999976 688999999999999665
No 169
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=29.94 E-value=25 Score=19.74 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.4
Q ss_pred CceEEEEecCCC
Q 015866 92 GVRYAVFGLGDS 103 (399)
Q Consensus 92 ~~~~avfGlGds 103 (399)
.+-|-|||+|+-
T Consensus 3 slFyEIFGtG~E 14 (26)
T 2xpn_B 3 HMFFEIFGTGEE 14 (26)
T ss_pred cEEEEEecCCce
Confidence 457889999974
No 170
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=29.89 E-value=15 Score=31.18 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=35.0
Q ss_pred cCCceEEEEecCCCCchh-------HHHHHHHHHHHHHhCCCeeeccceeecCC
Q 015866 90 LEGVRYAVFGLGDSGYQK-------FNFVAKKLDNRLLDLGATAVVERGLGDDQ 136 (399)
Q Consensus 90 l~~~~~avfGlGds~y~~-------f~~~~k~l~~~L~~lGa~~~~~~~~~D~~ 136 (399)
-+..+++|+-.||+.+.. ....+..|.++|.++|++...-..-.|+.
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~ 66 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDK 66 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCH
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCH
Confidence 356899999999976531 24567889999999999987655555553
No 171
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=29.67 E-value=52 Score=30.62 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=26.4
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|.+.+
T Consensus 141 ~l~g~~vgIIG~G--------~IG~~~A~~l~~~G~~V~ 171 (311)
T 2cuk_A 141 DLQGLTLGLVGMG--------RIGQAVAKRALAFGMRVV 171 (311)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEEEEC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999986 578889999999998754
No 172
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=29.65 E-value=1.5e+02 Score=27.41 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC--------C-C--CCCeEEEEeecCCCCCCch----hHHHHHHHHHhcc
Q 015866 20 ALDAAERIGRESERRGCPVVVRPVDDYDARC--------L-P--EEDTVIFVVSTTGQGDTPD----SMKVFWRFLLQKS 84 (399)
Q Consensus 20 te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~--------l-~--~~~~ii~~~sT~g~G~~p~----~~~~f~~~L~~~~ 84 (399)
...+|++|.+.+...|+++...+-.....+- + + +..+|-+...+.-.+..|. ...+|-+.|...-
T Consensus 99 d~eLA~~i~~~l~~~g~~~~~~~~~~~~lDHG~~vpL~~l~p~~~~pVVpis~~~~p~~~~~~~~~~~~~~lG~aL~~~~ 178 (312)
T 3vsj_B 99 DVELAEACAEEGRKAGLVTKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLNTKEGMSEMDVLGKATREAI 178 (312)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHCTTCCSCEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeeccCccccCCcchHhHHHHhCCCCCCCEEEEeecCCCCCCChhhhHHHHHHHHHHHHHHH
Confidence 3689999999999999987654433222110 1 2 2333333333100023444 5556666664320
Q ss_pred CCccccCCceEEEEecCCCCc
Q 015866 85 LSKQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 85 ~~~~~l~~~~~avfGlGds~y 105 (399)
. -.+.+++|+|+||.+.
T Consensus 179 -~---~~d~~Vlii~SG~lsH 195 (312)
T 3vsj_B 179 -R---KTGRKAVLLASNTLSH 195 (312)
T ss_dssp -H---HHTCEEEEEECCCSCC
T ss_pred -H---hcCCCEEEEEECcccc
Confidence 0 0268999999998764
No 173
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.60 E-value=2.1e+02 Score=25.21 Aligned_cols=134 Identities=8% Similarity=0.057 Sum_probs=76.2
Q ss_pred cCCeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------C--CCCCeEEEEeecCCCCCCchhHH
Q 015866 5 KRNKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------L--PEEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 5 ~~~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l--~~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
+.++|.++..+. ...-..+.+.+.+.+++.|+.+.++...+.+.+. + ...+.||+..... +...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~~ 76 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP------VELT 76 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST------TTTH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH------HHHH
Confidence 456666665443 3456778888989999999988774433333221 1 2466666643321 1233
Q ss_pred HHHHHHHhccCCccccCCceEEEEecCCC-----Cc--hhHHHHHHHHHHHHHhC--CCeeeccceeecCCCCCCcccch
Q 015866 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDS-----GY--QKFNFVAKKLDNRLLDL--GATAVVERGLGDDQHPSGYEGAL 145 (399)
Q Consensus 75 ~f~~~L~~~~~~~~~l~~~~~avfGlGds-----~y--~~f~~~~k~l~~~L~~l--Ga~~~~~~~~~D~~~~~g~~~~~ 145 (399)
..++.+... |..+.+++.... .| .....+++.+-+.|.+. |.+++.=.+ +.. ....
T Consensus 77 ~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~-~~~------~~~~ 141 (305)
T 3g1w_A 77 DTINKAVDA--------GIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVIT-LPN------QLNH 141 (305)
T ss_dssp HHHHHHHHT--------TCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE-CTT------CHHH
T ss_pred HHHHHHHHC--------CCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEe-CCC------cccH
Confidence 456666443 455666664211 11 13456778888888887 888775332 321 1355
Q ss_pred hhHHHHHHHHHHhh
Q 015866 146 DPWMRSLWRRLHQI 159 (399)
Q Consensus 146 ~~W~~~l~~~l~~~ 159 (399)
..+.+.+.+++.+.
T Consensus 142 ~~R~~gf~~~l~~~ 155 (305)
T 3g1w_A 142 QERTTGFKETLEAE 155 (305)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 66677777777654
No 174
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=29.47 E-value=1.1e+02 Score=27.34 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC--cCCCCCCCeEEEEee
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVS 62 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~--~~~l~~~~~ii~~~s 62 (399)
+++|+|+=.....+...+.+.+ ++.|++++++.+...+ +.++.+++.||+..+
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l----~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFL----AGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHH----HHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHH----HHCCCeEEEEeccCCCcCcCccccCCEEEECCC
Confidence 5678888777778887777664 5679999998875432 345667776666543
No 175
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=29.45 E-value=49 Score=32.15 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| ..|+.+.++++.+|.+.+
T Consensus 142 el~gktlGiIGlG--------~IG~~vA~~l~~~G~~V~ 172 (404)
T 1sc6_A 142 EARGKKLGIIGYG--------HIGTQLGILAESLGMYVY 172 (404)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred ccCCCEEEEEeEC--------HHHHHHHHHHHHCCCEEE
Confidence 5899999999986 578889999999998865
No 176
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=29.37 E-value=98 Score=28.36 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHhcCCCcE--EEeCCCCC-------cCCCCCCCeEEEEeecCCCCCC--chhHHHHHHHHHhccCC
Q 015866 18 GNALDAAERIGRESERRGCPVV--VRPVDDYD-------ARCLPEEDTVIFVVSTTGQGDT--PDSMKVFWRFLLQKSLS 86 (399)
Q Consensus 18 G~te~~A~~l~~~l~~~g~~~~--v~~l~~~~-------~~~l~~~~~ii~~~sT~g~G~~--p~~~~~f~~~L~~~~~~ 86 (399)
=|+...++++++.+.++|+.++ ++|+.++. ..-+..--.+-|+.... .|.+ |++...|.+.|.+. +
T Consensus 121 ~N~~~~~~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv~-~g~~~~~~~l~~~~~~l~~~--~ 197 (275)
T 3no5_A 121 DNPPELVDWLAAEMKTYGIKPEVEAFDLSMIFQAAAMQAAGAIVGPLHIQFVMGIK-NAMPVDREVLEFYVQTLKRL--S 197 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHHHTSSCSSCEEEEEECCT-TSCCCCHHHHHHHHHHHHHH--C
T ss_pred cCCHHHHHHHHHHHHHcCCeeEEEEEcHHHHHHHHHHHHCCCCCCCeeEEEEeCCC-CCCCCCHHHHHHHHHHHHhC--C
Confidence 3688899999999999998765 44544321 11233323444444433 2444 44666666655431 2
Q ss_pred ccccCCceEEEEecCCCCc
Q 015866 87 KQWLEGVRYAVFGLGDSGY 105 (399)
Q Consensus 87 ~~~l~~~~~avfGlGds~y 105 (399)
.+..++++|.|-..+
T Consensus 198 ----~~~~w~v~g~Gr~~~ 212 (275)
T 3no5_A 198 ----PDATWTGAGIGRHQL 212 (275)
T ss_dssp ----TTCEEEEEECGGGHH
T ss_pred ----CCCeEEEEecCHhhH
Confidence 367999999996654
No 177
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=29.24 E-value=53 Score=30.66 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=26.4
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|..+|.+.+
T Consensus 143 ~l~g~~vgIIG~G--------~IG~~~A~~l~~~G~~V~ 173 (320)
T 1gdh_A 143 KLDNKTLGIYGFG--------SIGQALAKRAQGFDMDID 173 (320)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEECcC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999987 578889999999997654
No 178
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=29.09 E-value=52 Score=32.18 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=27.4
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| ..|+.+.++++.+|.+.++
T Consensus 153 el~gktvGIIGlG--------~IG~~vA~~l~~~G~~V~~ 184 (416)
T 3k5p_A 153 EVRGKTLGIVGYG--------NIGSQVGNLAESLGMTVRY 184 (416)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCEEEEEeeC--------HHHHHHHHHHHHCCCEEEE
Confidence 5889999999986 5788999999999988753
No 179
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=28.97 E-value=45 Score=30.94 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=26.3
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|+.+|.+.+
T Consensus 121 ~l~g~~vgIIG~G--------~IG~~~A~~l~~~G~~V~ 151 (303)
T 1qp8_A 121 LIQGEKVAVLGLG--------EIGTRVGKILAALGAQVR 151 (303)
T ss_dssp CCTTCEEEEESCS--------THHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEEccC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999987 467888899999998764
No 180
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=28.93 E-value=80 Score=28.35 Aligned_cols=38 Identities=11% Similarity=0.325 Sum_probs=30.7
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecC-CCcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~-~~~~Y~~GD~l~I~P~N 275 (399)
+|++++.+++ +++.+.|..++ ..+.|+||.++.|..+.
T Consensus 13 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~ 51 (290)
T 2r6h_A 13 EVLSNKNVST-----FIKEFVVKLPEGETMNFKSGSYAQIKIPK 51 (290)
T ss_dssp EEEEEEESSS-----SEEEEEEECSTTCCCCCCTTCEEEEEECS
T ss_pred EEEEeeecCC-----CeEEEEEEcCCCCccccCCCceEEEEccc
Confidence 8999999975 48889998874 35789999999996543
No 181
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=28.88 E-value=69 Score=28.18 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=30.0
Q ss_pred ceEEEE-ecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 93 VRYAVF-GLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 93 ~~~avf-GlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
++++|| |.....-..|..+++.+-+.|.+.|...++..+
T Consensus 14 ~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg 53 (215)
T 2a33_A 14 RRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGG 53 (215)
T ss_dssp SEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 479999 665433345788999999999999998887544
No 182
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=28.79 E-value=42 Score=32.35 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=27.4
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| .+|+.+.++|+.+|++.++
T Consensus 113 ~l~g~tvGIIGlG--------~IG~~vA~~l~~~G~~V~~ 144 (380)
T 2o4c_A 113 DLAERTYGVVGAG--------QVGGRLVEVLRGLGWKVLV 144 (380)
T ss_dssp CGGGCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCEEEEEeCC--------HHHHHHHHHHHHCCCEEEE
Confidence 5889999999976 5788899999999988653
No 183
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=28.76 E-value=3.4e+02 Score=24.87 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=74.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcCCC----------CCCCeEEEEeecC-----------
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----------PEEDTVIFVVSTT----------- 64 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~~l----------~~~~~ii~~~sT~----------- 64 (399)
+.+.|+-...---++.+++.-.+.+++.|+....+.+.+- +.++| ++.+.|++-.|--
T Consensus 34 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~ 113 (288)
T 1b0a_A 34 PGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLER 113 (288)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTT
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Confidence 5677777777778899999988989999998877776432 11111 2233444444321
Q ss_pred --------------------C-CCCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCC
Q 015866 65 --------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG 123 (399)
Q Consensus 65 --------------------g-~G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lG 123 (399)
| .+-.|-+....++.|+... ..+.|+++.|+|-|.. +++-+...|...|
T Consensus 114 I~p~KDVDG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~~---i~l~gk~vvVIG~s~i-------VG~p~A~lL~~~g 183 (288)
T 1b0a_A 114 IHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYN---IDTFGLNAVVIGASNI-------VGRPMSMELLLAG 183 (288)
T ss_dssp SCTTTCTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHTT---CCCTTCEEEEECCCTT-------THHHHHHHHHTTT
T ss_pred cCCccCcccCCccchhHHhCCCCCCCCCcHHHHHHHHHHcC---CCCCCCEEEEECCChH-------HHHHHHHHHHHCC
Confidence 1 1334556666666666543 2589999999998744 3777888899999
Q ss_pred Ceee
Q 015866 124 ATAV 127 (399)
Q Consensus 124 a~~~ 127 (399)
|+..
T Consensus 184 AtVt 187 (288)
T 1b0a_A 184 CTTT 187 (288)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8864
No 184
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=28.58 E-value=92 Score=22.70 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=24.5
Q ss_pred CeEEEEEECCCchHH-----HHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 7 NKLLILYASQTGNAL-----DAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 7 ~~v~IlY~S~tG~te-----~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
++|.|+..|..+.++ .-|++ .|.+.|++.+.+|++.
T Consensus 2 ~~v~ly~~~~C~~c~~~~~~~~ak~---~L~~~~i~~~~~di~~ 42 (93)
T 1t1v_A 2 SGLRVYSTSVTGSREIKSQQSEVTR---ILDGKRIQYQLVDISQ 42 (93)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHH---HHHHTTCCCEEEETTS
T ss_pred CCEEEEEcCCCCCchhhHHHHHHHH---HHHHCCCceEEEECCC
Confidence 467777777788885 44443 3556788877777764
No 185
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=28.46 E-value=52 Score=32.37 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 74 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 74 ~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
...++.+.+.. ...+.|++++|+|+| .+|+.+.++|+.+|++.++
T Consensus 195 ~slldgi~rat--g~~L~GktVgIiG~G--------~IG~~vA~~Lka~Ga~Viv 239 (436)
T 3h9u_A 195 ESLVDGIKRAT--DVMIAGKTACVCGYG--------DVGKGCAAALRGFGARVVV 239 (436)
T ss_dssp HHHHHHHHHHH--CCCCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhc--CCcccCCEEEEEeeC--------HHHHHHHHHHHHCCCEEEE
Confidence 34444443321 235889999999976 4789999999999998653
No 186
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=28.21 E-value=86 Score=27.01 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=31.0
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 93 VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 93 ~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
++++|||.....-+.|...++.+-+.|.+.|...++..+
T Consensus 14 ~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~GGG 52 (189)
T 3sbx_A 14 WTVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVWGGG 52 (189)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCB
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 689999964433357889999999999999998887543
No 187
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=28.15 E-value=56 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=30.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
|+|+++- ..+|..+..+..|++.|.++|++|.++....
T Consensus 7 mkIl~~~-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMA-GGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEEC-CSSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred cEEEEEe-CCCccchhHHHHHHHHHHHcCCEEEEEecCC
Confidence 6777764 4457778888899999999999999887654
No 188
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.09 E-value=16 Score=32.14 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=34.0
Q ss_pred CCeEEEE-EECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc----CCCCCCCeEEE
Q 015866 6 RNKLLIL-YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----RCLPEEDTVIF 59 (399)
Q Consensus 6 ~~~v~Il-Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~----~~l~~~~~ii~ 59 (399)
.++|+++ |+|..-......+.+.+.+++.|+++.++++.+.+. +.+.+.+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEE
Confidence 4555544 776543445566777778888898888777665443 23456666655
No 189
>3som_A Methylmalonic aciduria and homocystinuria type C; structural genomics, structural genomics consortium, SGC, CB organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo sapiens}
Probab=28.03 E-value=21 Score=32.78 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=25.4
Q ss_pred EEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC
Q 015866 12 LYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (399)
Q Consensus 12 lY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~ 47 (399)
+|.||+-+++.+-+.|.+.|...|+++..+.+..|+
T Consensus 1 ~~~~~~~~~~~l~~~L~~~L~~~GFEv~PFkVgwYN 36 (286)
T 3som_A 1 YFQSMEPKVAELKQKIEDTLCPFGFEVYPFQVAWYN 36 (286)
T ss_dssp -------CHHHHHHHHHHHHGGGTEEEEEEEHHHHH
T ss_pred CchhhhhhHHHHHHHHHhhhccCCeeeeecccHHHH
Confidence 367999999999999999999999998888775543
No 190
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=28.02 E-value=43 Score=29.56 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhcCCCc
Q 015866 6 RNKLLILYASQTGNAL---DAAERIGRESERRGCPV 38 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te---~~A~~l~~~l~~~g~~~ 38 (399)
+++|.|+-||..|+.. +.|+++++.|.++|+.+
T Consensus 13 m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~v 48 (215)
T 2a33_A 13 FRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDL 48 (215)
T ss_dssp CSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEE
Confidence 4457777699998753 67999999999988643
No 191
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=27.91 E-value=23 Score=32.38 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCC---CcC-------CCC-CCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC-ccccC
Q 015866 24 AERIGRESERRGCPVVVRPVDDY---DAR-------CLP-EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS-KQWLE 91 (399)
Q Consensus 24 A~~l~~~l~~~g~~~~v~~l~~~---~~~-------~l~-~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~-~~~l~ 91 (399)
+..+++.|++.|.++..+.+=+. +.. ++. .++.|||.|+. ..+.|++.+...... ...+.
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~n--------aV~~~~~~l~~~~~~~~~~l~ 115 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGV--------GVRDLLEAGKALGLDLEGPLA 115 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHH--------HHHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHH--------HHHHHHHHHHHcCchHHHHhc
Confidence 46666667777876543222111 111 132 57766665542 367788887654221 01234
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 92 GVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 92 ~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
+.+++++| ....+.|++.|.+.
T Consensus 116 ~~~i~aVG-------------~~Ta~aL~~~G~~~ 137 (286)
T 3d8t_A 116 KAFRLARG-------------AKAARALKEAGLPP 137 (286)
T ss_dssp HSEEEESS-------------HHHHHHHHHTTCCC
T ss_pred CCeEEEEC-------------HHHHHHHHHcCCCc
Confidence 56777766 34455777889765
No 192
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=27.75 E-value=46 Score=31.38 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=28.2
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
..+.|++++|+|+| ..|+.+.++++.+|++.++
T Consensus 137 ~~l~g~tvGIiG~G--------~IG~~va~~~~~fg~~v~~ 169 (334)
T 3kb6_A 137 RELNRLTLGVIGTG--------RIGSRVAMYGLAFGMKVLC 169 (334)
T ss_dssp CCGGGSEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred ceecCcEEEEECcc--------hHHHHHHHhhcccCceeee
Confidence 35789999999976 5789999999999999874
No 193
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=27.70 E-value=46 Score=32.48 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.6
Q ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 16 QTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 16 ~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
.+|-++.++..+++.|.+.|++|.++...
T Consensus 31 ~~GG~~~~~~~la~~L~~~G~~V~v~~~~ 59 (499)
T 2r60_A 31 DFGGQLVYVKEVSLALAEMGVQVDIITRR 59 (499)
T ss_dssp TBSHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCeeehHHHHHHHHHhcCCeEEEEeCC
Confidence 46889999999999999999999988654
No 194
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=27.58 E-value=1.1e+02 Score=28.49 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
+..-|++.|.... ..++++++.|+|.| ++++.+...|.+.|++.+
T Consensus 137 D~~Gf~~~L~~~~---~~l~gk~~lVlGaG--------G~g~aia~~L~~~Ga~~V 181 (315)
T 3tnl_A 137 DGTGYMRALKEAG---HDIIGKKMTICGAG--------GAATAICIQAALDGVKEI 181 (315)
T ss_dssp HHHHHHHHHHHTT---CCCTTSEEEEECCS--------HHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHcC---CCccCCEEEEECCC--------hHHHHHHHHHHHCCCCEE
Confidence 3778999987643 25789999999975 678899999999999655
No 195
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=27.52 E-value=3e+02 Score=23.84 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=78.0
Q ss_pred cCCeEEEEEECCCc-hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC--CCCCeEEEEeecCCCCCCchhHHH
Q 015866 5 KRNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDSMKV 75 (399)
Q Consensus 5 ~~~~v~IlY~S~tG-~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l--~~~~~ii~~~sT~g~G~~p~~~~~ 75 (399)
+...|.|+..+.+. --..+.+.+.+.+++.|+.+.+.+.+.-... .+ ...+.||+.... +.....
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~------~~~~~~ 77 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN------LDVLNP 77 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC------HHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------hhhhHH
Confidence 45567777765443 3356888899999999999888876532110 11 256777655321 123455
Q ss_pred HHHHHHhccCCccccCCceEEEEecCCCC---c--hhHHHHHHHHHHHHHh--CCCeeeccceeecCCCCCCcccchhhH
Q 015866 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSG---Y--QKFNFVAKKLDNRLLD--LGATAVVERGLGDDQHPSGYEGALDPW 148 (399)
Q Consensus 76 f~~~L~~~~~~~~~l~~~~~avfGlGds~---y--~~f~~~~k~l~~~L~~--lGa~~~~~~~~~D~~~~~g~~~~~~~W 148 (399)
.++.+... +..+.+++..... | .....+++.+-+.|.+ .|.+++.= ..++.. ......+
T Consensus 78 ~~~~~~~~--------~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~-i~~~~~-----~~~~~~R 143 (291)
T 3l49_A 78 WLQKINDA--------GIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLV-FNGFYS-----VPVCKIR 143 (291)
T ss_dssp HHHHHHHT--------TCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEE-ECSCTT-----SHHHHHH
T ss_pred HHHHHHHC--------CCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEE-EeCCCC-----CchHHHH
Confidence 66666543 4455555543211 1 1345677777788888 88887742 222221 2344566
Q ss_pred HHHHHHHHHh
Q 015866 149 MRSLWRRLHQ 158 (399)
Q Consensus 149 ~~~l~~~l~~ 158 (399)
.+.+.+++.+
T Consensus 144 ~~gf~~~l~~ 153 (291)
T 3l49_A 144 YDQMKYVLEA 153 (291)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777777754
No 196
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=27.48 E-value=56 Score=32.38 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=27.8
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|.| ..|+.+.++++.+|++.++
T Consensus 244 ~L~GKTVgVIG~G--------~IGr~vA~~lrafGa~Viv 275 (464)
T 3n58_A 244 MMAGKVAVVCGYG--------DVGKGSAQSLAGAGARVKV 275 (464)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred cccCCEEEEECcC--------HHHHHHHHHHHHCCCEEEE
Confidence 5899999999976 4789999999999998764
No 197
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=27.26 E-value=1.4e+02 Score=31.10 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=58.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC-----cCC--CCCCCeEEEEeecCC-------------
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-----ARC--LPEEDTVIFVVSTTG------------- 65 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~-----~~~--l~~~~~ii~~~sT~g------------- 65 (399)
+++|.|+-+...|.-+.-+..+.+.|++.|+.|.++....-+ .++ -..+|.||+-...-|
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~ 608 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSA 608 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCT
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccccc
Confidence 468888877678999999999999999999999988774321 111 235787777655432
Q ss_pred ---CC--CCchhHHHHHHHHHhccCCccccCCceEEEEecC
Q 015866 66 ---QG--DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLG 101 (399)
Q Consensus 66 ---~G--~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlG 101 (399)
.- .....+..|+....+ .||-+|.+|-|
T Consensus 609 ~~~~~~L~~~~~~~~~v~~~~~--------~gKpIaAIc~a 641 (688)
T 2iuf_A 609 GSGASTLYPAGRPLNILLDAFR--------FGKTVGALGSG 641 (688)
T ss_dssp TSCCCSSSCTTHHHHHHHHHHH--------HTCEEEEEGGG
T ss_pred ccchhhcccChHHHHHHHHHHH--------cCCEEEEECch
Confidence 00 012345555555432 47888888854
No 198
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=27.17 E-value=48 Score=31.17 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=26.3
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++++.+|++.+
T Consensus 143 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~ 173 (333)
T 1j4a_A 143 EVRDQVVGVVGTG--------HIGQVFMQIMEGFGAKVI 173 (333)
T ss_dssp CGGGSEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred cCCCCEEEEEccC--------HHHHHHHHHHHHCCCEEE
Confidence 5789999999986 578889999999998764
No 199
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=26.43 E-value=1.9e+02 Score=26.26 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcE---EEeCCCCCcCC----CC--CCCeEEEEeecCCCCCCchhHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVV---VRPVDDYDARC----LP--EEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~---v~~l~~~~~~~----l~--~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
.+++.|+| +.+...+..++.+.+.+.+.|+++. .+.....+... +. +.+.|++.++ . . .+..|
T Consensus 139 ~~~ia~i~-~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~-~-~-----~a~~~ 210 (368)
T 4eyg_A 139 IKKVATLT-SDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVP-A-G-----QGGNF 210 (368)
T ss_dssp CCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECC-T-T-----CHHHH
T ss_pred CCEEEEEe-cCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEecc-c-h-----HHHHH
Confidence 46888998 5667778888999999999997643 22223222111 11 3344443222 1 1 47788
Q ss_pred HHHHHhccCCccccCCceEEEEecCC
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGD 102 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGd 102 (399)
++.+.+.. +.+..+.++|.++
T Consensus 211 ~~~~~~~g-----~~~~~v~~~~~~~ 231 (368)
T 4eyg_A 211 MKQFAERG-----LDKSGIKVIGPGD 231 (368)
T ss_dssp HHHHHHTT-----GGGTTCEEEEETT
T ss_pred HHHHHHcC-----CCcCCceEEecCc
Confidence 88887643 2232377788754
No 200
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=25.72 E-value=64 Score=28.47 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=27.5
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
.+.+++. +...+.+|+.|.+.|++.|+++++..++
T Consensus 130 ~l~~~~~--~~~~~~~a~~iq~~l~~iGI~v~i~~~~ 164 (259)
T 3pam_A 130 QFEIMTQ--SLEEEKVALAFQSNLSRLGIHAEIRTVD 164 (259)
T ss_dssp EEEEEES--SHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred EEEEEeC--CchHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3444543 3677899999999999999999887765
No 201
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=25.56 E-value=1.3e+02 Score=27.38 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=37.1
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
|.-+| ..-|++.|.... ..++++++.|+|.| .+++.+...|.+.|+..+
T Consensus 105 G~NTD-~~G~~~~L~~~~---~~l~~k~vlvlGaG--------g~g~aia~~L~~~G~~~v 153 (281)
T 3o8q_A 105 GDNTD-GEGLVQDLLAQQ---VLLKGATILLIGAG--------GAARGVLKPLLDQQPASI 153 (281)
T ss_dssp EECCH-HHHHHHHHHHTT---CCCTTCEEEEECCS--------HHHHHHHHHHHTTCCSEE
T ss_pred EEecH-HHHHHHHHHHhC---CCccCCEEEEECch--------HHHHHHHHHHHhcCCCeE
Confidence 34454 778998886543 24789999999986 578889999999997544
No 202
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=25.55 E-value=1.2e+02 Score=31.09 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHh-----cCCCcEEEeCCCCCcCCC------------CCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 20 ALDAAERIGRESER-----RGCPVVVRPVDDYDARCL------------PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 20 te~~A~~l~~~l~~-----~g~~~~v~~l~~~~~~~l------------~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
+..+|+.+++.+.+ .|..|+++..+.. +... .+.+.+|++++|++.|...
T Consensus 35 ~~~~a~~~~~~l~~~l~~~~g~~vevV~~~~~-I~~~~eA~~~ae~F~~~~vd~ii~~~~~w~yg~et------------ 101 (595)
T 3a9s_A 35 TMNMAKAVAKLLEENVFYYNGQPVECVIADTC-IGGVKEAAEAAEKFAREGVGVSITVTPCWCYGTET------------ 101 (595)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBCCEEECSSC-BCSHHHHHHHHHHHHHHTEEEEEEEESSCCCGGGT------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEECCCe-eCCHHHHHHHHHHHHHcCCCEEEEEeccCCCHHHH------------
Confidence 44556666555543 3455677777633 1211 1456888899997766211
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccceee----cCCCC---CCcccchhhHHHH--HH
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG----DDQHP---SGYEGALDPWMRS--LW 153 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~----D~~~~---~g~~~~~~~W~~~--l~ 153 (399)
... -.+..++|.|+-+..|+-+|..+-.+ ..|.+.|..-. ...+ |-.++ ....+.+.+|... +.
T Consensus 102 ~~~----~~~~Pvllw~~~~~e~pG~~gl~a~~-~~l~q~Gip~~--~I~G~~~~d~~d~~~~~~v~e~i~~f~raa~av 174 (595)
T 3a9s_A 102 MDM----DPHIPKAVWGFNGTERPGAVYLAAVL-AGYNQKGLPAF--GIYGKDVQDAGDTNIPEDVKEKLIRFAKAGLAV 174 (595)
T ss_dssp CCC----CTTSCEEEEECCCSSSCHHHHHHHHH-HHHHHHTCCCE--EEECSSCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred Hhh----cCCCCEEEEeCCCCCCcchhHHHHHH-HHHHHcCCceE--EEecCcccccccccccHHHHHHHHHHHHHHHHH
Confidence 111 12678899999887888889776655 56788886632 2233 32221 0146677788754 33
Q ss_pred HHHH
Q 015866 154 RRLH 157 (399)
Q Consensus 154 ~~l~ 157 (399)
..|.
T Consensus 175 ~~lr 178 (595)
T 3a9s_A 175 AMMK 178 (595)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 4443
No 203
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=25.54 E-value=1.7e+02 Score=29.01 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=59.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcC-CCcEEEeCCCCCc----CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRG-CPVVVRPVDDYDA----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g-~~~~v~~l~~~~~----~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~ 81 (399)
..+.++|++--|.+..++..+.+...+.. +.+..+|.+++.. ..+.....+++----.+.|..| ...+.++|.
T Consensus 119 ~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i~g~~~~~G~~~--~~~l~~~l~ 196 (521)
T 1hyu_A 119 FEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFVNGKEFGQGRMT--LTEIVAKVD 196 (521)
T ss_dssp EEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEETTEEEEESCCC--HHHHHHHHC
T ss_pred cceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEECCEEEecCCCC--HHHHHHHHh
Confidence 45777788899999999998887766543 3344456655320 0122333343311111235544 456777775
Q ss_pred hccCC-----ccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 82 QKSLS-----KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 82 ~~~~~-----~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
..... ...-....++|+|.| . ++-.....|.+.|.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~dVvIIGgG---~-----AGl~aA~~la~~G~~v 238 (521)
T 1hyu_A 197 TGAEKRAAEALNKRDAYDVLIVGSG---P-----AGAAAAVYSARKGIRT 238 (521)
T ss_dssp CSSCCHHHHHHHTSCCEEEEEECCS---H-----HHHHHHHHHHHTTCCE
T ss_pred hcccccccccccccCcccEEEECCc---H-----HHHHHHHHHHhCCCeE
Confidence 43110 001235679999987 2 2223333455567654
No 204
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=25.52 E-value=67 Score=30.11 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=25.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.+++++|+|+| .+|+.+.++|..+|.+.+
T Consensus 147 ~l~g~~vgIIG~G--------~iG~~iA~~l~~~G~~V~ 177 (334)
T 2dbq_A 147 DVYGKTIGIIGLG--------RIGQAIAKRAKGFNMRIL 177 (334)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEEccC--------HHHHHHHHHHHhCCCEEE
Confidence 5889999999987 578888889999997654
No 205
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=25.49 E-value=60 Score=30.57 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=26.3
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|..+|.+.+
T Consensus 161 ~l~g~~vgIIG~G--------~iG~~vA~~l~~~G~~V~ 191 (333)
T 3ba1_A 161 KFSGKRVGIIGLG--------RIGLAVAERAEAFDCPIS 191 (333)
T ss_dssp CCTTCCEEEECCS--------HHHHHHHHHHHTTTCCEE
T ss_pred ccCCCEEEEECCC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999987 578888999999998654
No 206
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=25.49 E-value=3.3e+02 Score=23.64 Aligned_cols=142 Identities=14% Similarity=0.092 Sum_probs=79.3
Q ss_pred ccccCCeEEEEEECC--CchHHHHHHHHHHHHHhc-CCCcEEEeC--CCCCcC-------CC--CCCCeEEEEeecCCCC
Q 015866 2 REEKRNKLLILYASQ--TGNALDAAERIGRESERR-GCPVVVRPV--DDYDAR-------CL--PEEDTVIFVVSTTGQG 67 (399)
Q Consensus 2 ~~~~~~~v~IlY~S~--tG~te~~A~~l~~~l~~~-g~~~~v~~l--~~~~~~-------~l--~~~~~ii~~~sT~g~G 67 (399)
++.+...|.|+..+. ...-..+.+.+.+.+.+. |+.+.+... +..+.+ .+ ...+.||+....
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~---- 79 (304)
T 3gbv_A 4 ASNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTV---- 79 (304)
T ss_dssp ---CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSS----
T ss_pred ccCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCC----
Confidence 344566777777664 556678888888999888 888887654 222221 11 346666665332
Q ss_pred CCchhHHHHHHHHHhccCCccccCCceEEEEecCCCC---c----hhHHHHHHHHHHHHHhCCC--eeeccceeecCCCC
Q 015866 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG---Y----QKFNFVAKKLDNRLLDLGA--TAVVERGLGDDQHP 138 (399)
Q Consensus 68 ~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~---y----~~f~~~~k~l~~~L~~lGa--~~~~~~~~~D~~~~ 138 (399)
++....+++.+... +..+.+++..... . ...-.+++.+.+.|.++|. +++.= ..++...+
T Consensus 80 --~~~~~~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~-i~~~~~g~ 148 (304)
T 3gbv_A 80 --PQYTKGFTDALNEL--------GIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAVNDREIVI-FRKIHEGV 148 (304)
T ss_dssp --GGGTHHHHHHHHHH--------TCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEE-EEEEBTTB
T ss_pred --hHHHHHHHHHHHHC--------CCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHhCCCCeEEE-EEecccCC
Confidence 12234566666543 4445555532111 1 1345677888888888887 77643 33222111
Q ss_pred CCcccchhhHHHHHHHHHHhh
Q 015866 139 SGYEGALDPWMRSLWRRLHQI 159 (399)
Q Consensus 139 ~g~~~~~~~W~~~l~~~l~~~ 159 (399)
. .......+.+.+.+++.+.
T Consensus 149 ~-~~~~~~~R~~gf~~~l~~~ 168 (304)
T 3gbv_A 149 I-GSNQQESREIGFRQYMQEH 168 (304)
T ss_dssp C-CCHHHHHHHHHHHHHHHHH
T ss_pred c-cchhHHHHHHHHHHHHHhh
Confidence 1 2335566677777888654
No 207
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=25.41 E-value=24 Score=32.26 Aligned_cols=56 Identities=4% Similarity=0.101 Sum_probs=38.2
Q ss_pred cCCeEEEEEECCCch---HHHHHHHHHHHHHhcCCCcEEEeCCCCC--cCCCCCCCeEEEE
Q 015866 5 KRNKLLILYASQTGN---ALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFV 60 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~---te~~A~~l~~~l~~~g~~~~v~~l~~~~--~~~l~~~~~ii~~ 60 (399)
.+|+|.|+||..+.- +-.-|..+.+.|++.|+++..+++++.. ...+.+.|.++.+
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLA 62 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEEC
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEe
Confidence 468999999876532 2234778888888999999999887532 2334456655543
No 208
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=25.35 E-value=48 Score=32.05 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=30.3
Q ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 7 NKLLILYAS-----QTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 7 ~~v~IlY~S-----~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
|+|+++-.+ ..|-++.++..+++.|.++|++|.++...
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~ 43 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPA 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 456666332 36899999999999999999999988754
No 209
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=25.27 E-value=70 Score=29.18 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=26.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+++.+.++|..+|++.+
T Consensus 152 ~l~g~~v~IiG~G--------~iG~~~a~~l~~~G~~V~ 182 (293)
T 3d4o_A 152 TIHGANVAVLGLG--------RVGMSVARKFAALGAKVK 182 (293)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEEeeC--------HHHHHHHHHHHhCCCEEE
Confidence 5789999999986 578888999999998543
No 210
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=25.10 E-value=60 Score=30.47 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=26.5
Q ss_pred cccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 88 ~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
..+.|++++|+|+| .+|+.+.+.|...|.+.+
T Consensus 142 ~~l~g~~vgIIG~G--------~iG~~vA~~l~~~G~~V~ 173 (333)
T 2d0i_A 142 ESLYGKKVGILGMG--------AIGKAIARRLIPFGVKLY 173 (333)
T ss_dssp CCSTTCEEEEECCS--------HHHHHHHHHHGGGTCEEE
T ss_pred CCCCcCEEEEEccC--------HHHHHHHHHHHHCCCEEE
Confidence 36889999999987 578888889999997654
No 211
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=24.96 E-value=83 Score=28.47 Aligned_cols=31 Identities=6% Similarity=-0.199 Sum_probs=26.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCc
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPV 38 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~ 38 (399)
|++.|+|- .++.+.++++++.+.|+++|+++
T Consensus 1 mki~ii~n-~~~~~~~~~~~l~~~l~~~g~~v 31 (272)
T 2i2c_A 1 MKYMITSK-GDEKSDLLRLNMIAGFGEYDMEY 31 (272)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHHTTSSCEE
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHCCCEe
Confidence 46788877 67889999999999999998765
No 212
>2l1l_A CAMP-dependent protein kinase inhibitor alpha; nuclear export, PKI NES, CRM1, RANGTP, nuclear protein; NMR {Homo sapiens}
Probab=24.94 E-value=22 Score=20.68 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.6
Q ss_pred ECCCchHHHHHHHHHH
Q 015866 14 ASQTGNALDAAERIGR 29 (399)
Q Consensus 14 ~S~tG~te~~A~~l~~ 29 (399)
+|.+|+|.++|.++++
T Consensus 1 ~~a~g~tsdLa~kLae 16 (27)
T 2l1l_A 1 GSASGNLNELALKLAG 16 (27)
T ss_dssp CCCCCCHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHH
Confidence 5789999999998875
No 213
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=24.58 E-value=61 Score=31.37 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=26.8
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+++.+.++|+.+|.+.+
T Consensus 188 ~l~gktvGIIGlG--------~IG~~vA~~l~a~G~~V~ 218 (393)
T 2nac_A 188 DLEAMHVGTVAAG--------RIGLAVLRRLAPFDVHLH 218 (393)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHGGGTCEEE
T ss_pred cCCCCEEEEEeEC--------HHHHHHHHHHHhCCCEEE
Confidence 5889999999987 578889999999998765
No 214
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=24.42 E-value=91 Score=27.77 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=76.9
Q ss_pred ccCCeEEEEEECCCc-hHH-HHHHHHHHHHHhcCCCcEEEeCCCCCc------CCC--CCCCeEEEEeecCCCCCCchhH
Q 015866 4 EKRNKLLILYASQTG-NAL-DAAERIGRESERRGCPVVVRPVDDYDA------RCL--PEEDTVIFVVSTTGQGDTPDSM 73 (399)
Q Consensus 4 ~~~~~v~IlY~S~tG-~te-~~A~~l~~~l~~~g~~~~v~~l~~~~~------~~l--~~~~~ii~~~sT~g~G~~p~~~ 73 (399)
.+...|.|+..+.+. .-. .+.+.+.+.+.+.|+.+.+.+.+.-.. +.+ ...+.||+..... . .
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~-~-----~- 83 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYR-R-----I- 83 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEE-E-----E-
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCc-c-----H-
Confidence 345667777766542 233 788899999999999988887653211 011 2567777665432 1 1
Q ss_pred HHHHHHHHhccCCccccCCceEEEEecCCC-----Cc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchh
Q 015866 74 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDS-----GY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALD 146 (399)
Q Consensus 74 ~~f~~~L~~~~~~~~~l~~~~~avfGlGds-----~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~ 146 (399)
.++.+ .-.+..+.+++.... .| .....+++.+-+.|.++|.+++. ...++.. .....
T Consensus 84 --~~~~~--------~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~-~i~~~~~-----~~~~~ 147 (301)
T 3miz_A 84 --VDPES--------GDVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLERGHRRIG-YIRLNPI-----LLGAE 147 (301)
T ss_dssp --CCCCC--------TTCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHTTTCCSEE-EEECCTT-----SHHHH
T ss_pred --HHHHH--------HhCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHHcCCCeEE-EEecCcc-----chhHH
Confidence 11111 123566666664221 12 13556788888899999988874 2333222 22455
Q ss_pred hHHHHHHHHHHhh
Q 015866 147 PWMRSLWRRLHQI 159 (399)
Q Consensus 147 ~W~~~l~~~l~~~ 159 (399)
.+.+.+.+++.+.
T Consensus 148 ~R~~Gf~~al~~~ 160 (301)
T 3miz_A 148 LRLDAFRRTTSEF 160 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6667777777654
No 215
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=24.39 E-value=91 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.0
Q ss_pred ceEEEEecCCCC-chhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 93 VRYAVFGLGDSG-YQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 93 ~~~avfGlGds~-y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
++++|||..... =+.|..+++.+-+.|.+.|...++..+
T Consensus 2 ~~V~V~gss~~~~~~~~~~~A~~lg~~La~~g~~lV~GGg 41 (191)
T 1t35_A 2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGS 41 (191)
T ss_dssp CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CEEEEEECCCCCCChHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 369999964422 246888999999999999999887544
No 216
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=24.19 E-value=72 Score=28.00 Aligned_cols=38 Identities=8% Similarity=0.255 Sum_probs=30.2
Q ss_pred eeeeeeecCCCCCCceeEEEEEEe-c-CC---CcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEF-V-SA---AIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l-~-~~---~~~Y~~GD~l~I~P~N 275 (399)
+|++++.+++ +++.++|.. + +. ...|+||.++.|..++
T Consensus 14 ~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 56 (250)
T 1tvc_A 14 EVVGLNWVSS-----NTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG 56 (250)
T ss_dssp EBCCCEEEET-----TEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS
T ss_pred EEEEEEEcCC-----CeEEEEEEecCCCCcccccCcCCCcEEEEEeCC
Confidence 8888888875 488888887 5 43 5789999999998654
No 217
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=24.06 E-value=20 Score=31.84 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCeEEEE-EECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEE
Q 015866 6 RNKLLIL-YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIF 59 (399)
Q Consensus 6 ~~~v~Il-Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~ 59 (399)
.++|+|+ |++.++......+.+.+.+++.|+++.++...+-..+.+.+.+.|++
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~l 85 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIV 85 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEE
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEE
Confidence 3556555 88767778888888888898889755444322211244566675555
No 218
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=23.94 E-value=75 Score=29.98 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=26.3
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHH-hCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL-DLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~-~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|. .+|.+.+
T Consensus 160 ~l~g~~vgIIG~G--------~IG~~vA~~l~~~~G~~V~ 191 (348)
T 2w2k_A 160 NPRGHVLGAVGLG--------AIQKEIARKAVHGLGMKLV 191 (348)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEEEEC--------HHHHHHHHHHHHhcCCEEE
Confidence 5889999999986 57888999999 9997654
No 219
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=23.92 E-value=3.8e+02 Score=23.68 Aligned_cols=132 Identities=10% Similarity=0.032 Sum_probs=67.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------C--CCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------L--PEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l--~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
.+|.++..+.+..-..+.+-+.+.+++.|+.+.+....+.+.+. + ...+.||+..... +.....+
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~~~~~ 75 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP------TAVIPTI 75 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST------TTTHHHH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------HHHHHHH
Confidence 34555554332244556677777888889888776543333221 1 3456666543221 1222344
Q ss_pred HHHHhccCCccccCCceEEEEecCCC-----Cc--hhHHHHHHHHHHHHHhC--CCeeeccceeecCCCCCCcccchhhH
Q 015866 78 RFLLQKSLSKQWLEGVRYAVFGLGDS-----GY--QKFNFVAKKLDNRLLDL--GATAVVERGLGDDQHPSGYEGALDPW 148 (399)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~avfGlGds-----~y--~~f~~~~k~l~~~L~~l--Ga~~~~~~~~~D~~~~~g~~~~~~~W 148 (399)
+.+... +..+.+++.... .| .....+++.+.+.|.++ |.+++. ...++.. ......+
T Consensus 76 ~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~-~i~~~~~-----~~~~~~R 141 (313)
T 2h3h_A 76 KKALEM--------GIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVV-IGTGSLT-----AMNSLQR 141 (313)
T ss_dssp HHHHHT--------TCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEE-EEESCSS-----CHHHHHH
T ss_pred HHHHHC--------CCeEEEeCCCCCCcceeEEECcCHHHHHHHHHHHHHHHcCCCCEEE-EEECCCC-----CccHHHH
Confidence 555432 444555553211 11 12345677777777776 777764 2223221 2234556
Q ss_pred HHHHHHHHHh
Q 015866 149 MRSLWRRLHQ 158 (399)
Q Consensus 149 ~~~l~~~l~~ 158 (399)
.+.+.+++.+
T Consensus 142 ~~gf~~~l~~ 151 (313)
T 2h3h_A 142 IQGFKDAIKD 151 (313)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 6666777643
No 220
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=23.78 E-value=88 Score=28.56 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
|.-+| ..-|...|..... .++++++.|+|.| .+++.+...|.+.|++.+
T Consensus 96 G~NTD-~~G~~~~L~~~~~---~l~~k~vlvlGaG--------g~g~aia~~L~~~G~~~v 144 (277)
T 3don_A 96 GYNTD-GIGYVNGLKQIYE---GIEDAYILILGAG--------GASKGIANELYKIVRPTL 144 (277)
T ss_dssp EECCH-HHHHHHHHHHHST---TGGGCCEEEECCS--------HHHHHHHHHHHTTCCSCC
T ss_pred EECCh-HHHHHHHHHHhCC---CcCCCEEEEECCc--------HHHHHHHHHHHHCCCCEE
Confidence 44454 7789988876432 4789999999986 678899999999998543
No 221
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=23.65 E-value=64 Score=30.14 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=25.7
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.|++++|+|+| .+|+.+.+.|...|.+.+
T Consensus 152 ~l~g~~vgIIG~G--------~iG~~iA~~l~~~G~~V~ 182 (330)
T 2gcg_A 152 GLTQSTVGIIGLG--------RIGQAIARRLKPFGVQRF 182 (330)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHGGGTCCEE
T ss_pred CCCCCEEEEECcC--------HHHHHHHHHHHHCCCEEE
Confidence 5889999999987 578888889999997653
No 222
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.60 E-value=3.7e+02 Score=23.51 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=73.3
Q ss_pred CCeEEEEEE------CCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCc------CCC--CCCCeEEEEeecCCCCCCch
Q 015866 6 RNKLLILYA------SQTGNALDAAERIGRESERRGCPVVVRPVDDYDA------RCL--PEEDTVIFVVSTTGQGDTPD 71 (399)
Q Consensus 6 ~~~v~IlY~------S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~------~~l--~~~~~ii~~~sT~g~G~~p~ 71 (399)
...|.|+.. .....-..+.+.+.+.+.+.|+.+.+.+.++-.. +.+ ...+.||+..+.. .+
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~-----~~ 81 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE-----ND 81 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT-----TC
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCccc-----Ch
Confidence 455666652 2334556788889999999999887766543110 111 3566777653321 11
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCC------Cch--hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCccc
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS------GYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEG 143 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds------~y~--~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~ 143 (399)
..++.+... +..+.+++.... .|- ..-.+++.+-+.|.++|.+++.= ..+... ..
T Consensus 82 ---~~~~~l~~~--------~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~-i~~~~~-----~~ 144 (295)
T 3hcw_A 82 ---PIKQMLIDE--------SMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQGVDELIF-ITEKGN-----FE 144 (295)
T ss_dssp ---HHHHHHHHT--------TCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHCCSEEEE-EEESSC-----CH
T ss_pred ---HHHHHHHhC--------CCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHHcCCccEEE-EcCCcc-----ch
Confidence 244555432 455666664211 111 24457778888888889988753 333322 22
Q ss_pred chhhHHHHHHHHHHh
Q 015866 144 ALDPWMRSLWRRLHQ 158 (399)
Q Consensus 144 ~~~~W~~~l~~~l~~ 158 (399)
......+.+.+++.+
T Consensus 145 ~~~~R~~Gf~~al~~ 159 (295)
T 3hcw_A 145 VSKDRIQGFETVASQ 159 (295)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 345556667777754
No 223
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=23.56 E-value=2.8e+02 Score=22.09 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=57.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC----------C-CcCCCC-CCCeEEEEeecCCCCCCchhHH
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD----------Y-DARCLP-EEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~----------~-~~~~l~-~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
++|.|+ -.+.+..++...+.+.|.+.|++ +++++- + +..+++ ..|++|++++. +...
T Consensus 23 ~~iaVV--Gas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-------~~~~ 91 (144)
T 2d59_A 23 KKIALV--GASPKPERDANIVMKYLLEHGYD--VYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-------KLTM 91 (144)
T ss_dssp CEEEEE--TCCSCTTSHHHHHHHHHHHTTCE--EEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-------HHHH
T ss_pred CEEEEE--ccCCCCCchHHHHHHHHHHCCCE--EEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-------HHHH
Confidence 345454 23334456777888888888985 444432 1 233444 35666666543 3566
Q ss_pred HHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeecccee
Q 015866 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (399)
Q Consensus 75 ~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~~ 132 (399)
..++.+... |.+..++-.|-. .+.+.+..++.|.+.+.|.+.
T Consensus 92 ~vv~~~~~~--------gi~~i~~~~g~~--------~~~l~~~a~~~Gi~vvGpnc~ 133 (144)
T 2d59_A 92 EYVEQAIKK--------GAKVVWFQYNTY--------NREASKKADEAGLIIVANRCM 133 (144)
T ss_dssp HHHHHHHHH--------TCSEEEECTTCC--------CHHHHHHHHHTTCEEEESCCH
T ss_pred HHHHHHHHc--------CCCEEEECCCch--------HHHHHHHHHHcCCEEEcCCch
Confidence 666665443 334456655521 467777888889887766543
No 224
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=23.55 E-value=53 Score=31.75 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=30.0
Q ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 7 NKLLILYAS-----QTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 7 ~~v~IlY~S-----~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
|+|+++-.+ ..|-++.++..+++.|.++|++|+++...
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~ 43 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPG 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 456555332 36889999999999999999999988754
No 225
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=23.50 E-value=4.5e+02 Score=24.94 Aligned_cols=118 Identities=10% Similarity=0.096 Sum_probs=55.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC----c-CCCCCCCeEEEEeecCCCCCCchhHHHHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD----A-RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~----~-~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L 80 (399)
++++.|+.|+.+-.-.+.|++|++.|.-.-.++++....+-. + +.+. .+-++++.||++ ...++..+.+-.+
T Consensus 27 ~~~~~if~g~~~~~la~~~~~ia~~lg~~l~~~~~~~F~dGE~~v~i~esvr-g~dV~iiqs~~~--~~nd~lmeLl~~i 103 (379)
T 2ji4_A 27 KGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVR-GKDVFIIQTVSK--DVNTTIMELLIMV 103 (379)
T ss_dssp --CCEEEECCCSGGGGHHHHHHHHHHTCCCCCEEEEECTTSCEEEEECSCCT-TCEEEEECCCCS--CHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHhHHHHHHHhCCceEeeEEEECCCCCEEEEeCCCcC-CCEEEEEeCCCC--CccHHHHHHHHHH
Confidence 445778888777665556666888774222234554444321 1 1222 334666667653 1223433333222
Q ss_pred HhccCCccccCCceEEEE-e-cC----CCCchhHHHHHHHHHHHHHhCCCeeeccc
Q 015866 81 LQKSLSKQWLEGVRYAVF-G-LG----DSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (399)
Q Consensus 81 ~~~~~~~~~l~~~~~avf-G-lG----ds~y~~f~~~~k~l~~~L~~lGa~~~~~~ 130 (399)
...+ ....+++.++ = +| |+....-.-.+|.+.+.|...|+.++.-.
T Consensus 104 dA~k----~asA~rit~ViPY~~YaRQdr~~~r~~i~ak~vA~lL~~aGad~vit~ 155 (379)
T 2ji4_A 104 YACK----TSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITM 155 (379)
T ss_dssp HHHH----HTTCSEEEEECSSCSSCCC-------CCHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHH----hcCCceEEEEEeccCccccccccCCCcHHHHHHHHHHHHcCCCEEEEe
Confidence 2221 1123333332 2 22 22111111257889999999999887543
No 226
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=23.39 E-value=1.1e+02 Score=28.07 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=36.8
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
|.-+| ..-|++.|..... .++++++.|+|.| .+++.+...|.++|++.+
T Consensus 101 G~NTD-~~G~~~~L~~~~~---~~~~k~vlvlGaG--------Gaaraia~~L~~~G~~~v 149 (282)
T 3fbt_A 101 GFNTD-YIGFGKMLSKFRV---EIKNNICVVLGSG--------GAARAVLQYLKDNFAKDI 149 (282)
T ss_dssp EECCH-HHHHHHHHHHTTC---CCTTSEEEEECSS--------TTHHHHHHHHHHTTCSEE
T ss_pred eeCCc-HHHHHHHHHHcCC---CccCCEEEEECCc--------HHHHHHHHHHHHcCCCEE
Confidence 33344 7889999976432 4789999999987 457888888889998654
No 227
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=23.36 E-value=65 Score=30.73 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.5
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCe-ee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT-AV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~-~~ 127 (399)
.+.|++++|+|+| .+|+.+.++|..+|++ .+
T Consensus 161 ~l~g~tvgIIG~G--------~IG~~vA~~l~~~G~~~V~ 192 (364)
T 2j6i_A 161 DIEGKTIATIGAG--------RIGYRVLERLVPFNPKELL 192 (364)
T ss_dssp CSTTCEEEEECCS--------HHHHHHHHHHGGGCCSEEE
T ss_pred cCCCCEEEEECcC--------HHHHHHHHHHHhCCCcEEE
Confidence 5899999999986 5788899999999986 43
No 228
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=23.35 E-value=1.2e+02 Score=26.36 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=30.4
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 93 VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 93 ~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
++++|||.....-+.|..+++.+-+.|.+.|...++..+
T Consensus 23 ~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~lV~GGG 61 (199)
T 3qua_A 23 WAVCVYCASGPTHPELLELAAEVGSSIAARGWTLVSGGG 61 (199)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 689999754433347889999999999999988886543
No 229
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=23.25 E-value=75 Score=31.23 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=27.4
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| .+|+.+.++|+.+|++.++
T Consensus 217 ~L~GktV~ViG~G--------~IGk~vA~~Lra~Ga~Viv 248 (435)
T 3gvp_A 217 MFGGKQVVVCGYG--------EVGKGCCAALKAMGSIVYV 248 (435)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHHTTCEEEE
T ss_pred eecCCEEEEEeeC--------HHHHHHHHHHHHCCCEEEE
Confidence 5789999999976 3789999999999998653
No 230
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=23.21 E-value=93 Score=26.91 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=28.8
Q ss_pred ceEEEEecCCCCch----hHHHHHHHHHHHHHhCCCeeecc
Q 015866 93 VRYAVFGLGDSGYQ----KFNFVAKKLDNRLLDLGATAVVE 129 (399)
Q Consensus 93 ~~~avfGlGds~y~----~f~~~~k~l~~~L~~lGa~~~~~ 129 (399)
++++|||.....-+ .|..+++.+-+.|.+.|...++.
T Consensus 24 ~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVsG 64 (195)
T 1rcu_A 24 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNG 64 (195)
T ss_dssp CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEEC
T ss_pred CeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEeC
Confidence 47999996433223 57899999999999999888873
No 231
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=23.16 E-value=77 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=25.9
Q ss_pred cCCceEEEEecCCCCchhHHHHHHHHHHHHHh-CCCeee
Q 015866 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD-LGATAV 127 (399)
Q Consensus 90 l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~-lGa~~~ 127 (399)
++|++++|.|+| .+++.+.++|.. +|++.+
T Consensus 210 l~gktvgI~G~G--------~VG~~vA~~l~~~~G~kVv 240 (419)
T 1gtm_A 210 LKGKTIAIQGYG--------NAGYYLAKIMSEDFGMKVV 240 (419)
T ss_dssp STTCEEEEECCS--------HHHHHHHHHHHHTTCCEEE
T ss_pred cCCCEEEEEcCC--------HHHHHHHHHHHHhcCCEEE
Confidence 899999999987 456777888888 999987
No 232
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=23.14 E-value=1.6e+02 Score=23.36 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.0
Q ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 5 ~~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
.+..|.|+|-+..-.++ +-+.|...+++.|++.++....+
T Consensus 4 ~~PaI~i~~~~~~~~~~-~l~~vl~GIEEEGip~~v~~~~~ 43 (117)
T 1nbw_B 4 SPPGVRLFYDPRGHHAG-AINELCWGLEEQGVPCQTITYDG 43 (117)
T ss_dssp -CCCEEEEECTTSCCHH-HHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEEeCCCCCCHH-HHHHHHhhhhhcCCCeEEEEeCC
Confidence 45566776666665554 55888889999999999887765
No 233
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=23.04 E-value=1.1e+02 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=30.3
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCC-C-cccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSA-A-IEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~-~-~~Y~~GD~l~I~P~N 275 (399)
+|++++.+++ +++.+.|..++. . ..|+||.++.|..++
T Consensus 12 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 51 (321)
T 2pia_A 12 KIASKEKIAR-----DIWSFELTDPQGAPLPPFEAGANLTVAVPN 51 (321)
T ss_dssp EEEEEEEEET-----TEEEEEEECTTCCCCCCCCTTCEEEEECTT
T ss_pred EEEEEEEcCC-----CEEEEEEEcCCCCcCCCCCCCCEEEEECCC
Confidence 8899999975 488899988742 2 379999999998664
No 234
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=23.03 E-value=1.4e+02 Score=29.27 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=35.7
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCC-C-cCCCCCCCeEEEEee
Q 015866 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-D-ARCLPEEDTVIFVVS 62 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~-~~~l~~~~~ii~~~s 62 (399)
++.|++.+.....+.+|+.|++.|++.|+++++..++.. . ...-.++++.+....
T Consensus 329 ~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~~~~~~~~~~~~~~d~~~~~~~ 385 (486)
T 3rqt_A 329 KIKLITYDGRPELSKIAQVLQSDAKKANIEIDIKSVDDIEGYLKDRSAWDATMYSFG 385 (486)
T ss_dssp EEEEEECSSSTHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHTTCTTSCSEEEEEEE
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEEEeccHHHHhhhCCCccEEEEeec
Confidence 344455444445678999999999999999998887642 1 112235666655443
No 235
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=22.97 E-value=75 Score=28.24 Aligned_cols=38 Identities=5% Similarity=0.079 Sum_probs=29.9
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
+|++++.+++ +++.+.|..++....|+||.++.|..++
T Consensus 9 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~pGQ~v~l~~~~ 46 (262)
T 1ep3_B 9 TVVSQREVAY-----NIFEMVLKGTLVDEMDLPGQFLHLAVPN 46 (262)
T ss_dssp EEEEEEEEET-----TEEEEEEESGGGGGCCSTTCEEEECCSC
T ss_pred EEEEEEEecC-----CEEEEEEEcCcccccCCCCceEEEEcCC
Confidence 7888888875 4788888876434689999999997654
No 236
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=22.96 E-value=74 Score=31.81 Aligned_cols=32 Identities=38% Similarity=0.366 Sum_probs=27.3
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| .+++.+.++|+.+|++.++
T Consensus 274 ~L~GktVgIIG~G--------~IG~~vA~~l~~~G~~V~v 305 (494)
T 3d64_A 274 MIAGKIAVVAGYG--------DVGKGCAQSLRGLGATVWV 305 (494)
T ss_dssp CCTTCEEEEECCS--------HHHHHHHHHHHTTTCEEEE
T ss_pred ccCCCEEEEEccC--------HHHHHHHHHHHHCCCEEEE
Confidence 5889999999976 4788999999999998653
No 237
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=22.90 E-value=1e+02 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.5
Q ss_pred eeeeeeecCCCCCCceeEEEEEEecCCCcccccCCEEEEccCC
Q 015866 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (399)
Q Consensus 233 ~v~~~~~Lt~~~~~~~v~hi~l~l~~~~~~Y~~GD~l~I~P~N 275 (399)
+|++++.+++ +++.+.|..+ ....|+||.++.|..++
T Consensus 6 ~V~~~~~~~~-----~~~~l~l~~~-~~~~~~pGq~v~l~~~~ 42 (232)
T 1qfj_A 6 KVTSVEAITD-----TVYRVRIVPD-AAFSFRAGQYLMVVMDE 42 (232)
T ss_dssp EEEEEEESSS-----SCEEEEEEES-SCCCCCTTCEEEEESSS
T ss_pred EEEEEEecCC-----CEEEEEEecC-CCCCcCCCCEEEEECCC
Confidence 7888888875 4778888876 46789999999997653
No 238
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=22.82 E-value=26 Score=31.99 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCcEEEeCCCCCc----------CCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHhccCC-------cc
Q 015866 26 RIGRESERRGCPVVVRPVDDYDA----------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS-------KQ 88 (399)
Q Consensus 26 ~l~~~l~~~g~~~~v~~l~~~~~----------~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~~~~~-------~~ 88 (399)
.+++.|++.|+++..+.+=++.+ .++..++.|||.|+. ..+.|++.+...... ..
T Consensus 39 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~n--------aV~~~~~~l~~~~~~~~~~~d~~~ 110 (286)
T 1jr2_A 39 PYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPR--------AVEAAELCLEQNNKTEVWERSLKE 110 (286)
T ss_dssp HHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHH--------HHHHHHHHHHHTTCHHHHHHHTHH
T ss_pred HHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHH--------HHHHHHHHHHhccccccchhhHHH
Confidence 34455666788765444322211 133567766665532 366677777543210 00
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~ 126 (399)
.+.++++++.| ..-.+.|++.|...
T Consensus 111 ~l~~~~i~aVG-------------~~Ta~aL~~~G~~~ 135 (286)
T 1jr2_A 111 KWNAKSVYVVG-------------NATASLVSKIGLDT 135 (286)
T ss_dssp HHHHSEEEECS-------------HHHHHHHHHTTCCC
T ss_pred HhccCcEEEEC-------------HHHHHHHHHcCCCc
Confidence 23456666666 34445677889765
No 239
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=22.73 E-value=2.8e+02 Score=25.10 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=70.0
Q ss_pred CCeEEEEEECCC-chHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC------CC--CCCCeEEEEeecCCCCCCchhHHHH
Q 015866 6 RNKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDSMKVF 76 (399)
Q Consensus 6 ~~~v~IlY~S~t-G~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~------~l--~~~~~ii~~~sT~g~G~~p~~~~~f 76 (399)
...|.++..+.+ ..-..+.+.+.+.+.+.|+.+.+.+.++ ... .+ ...+.||+...
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-------------- 128 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV-------------- 128 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC--------------
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch--------------
Confidence 455777766543 2456778888888888999888887765 211 11 24566665433
Q ss_pred HHHHHhccCCccccCCceEEEEecCCC----Cc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHH
Q 015866 77 WRFLLQKSLSKQWLEGVRYAVFGLGDS----GY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMR 150 (399)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~avfGlGds----~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~ 150 (399)
++.+ .-.+..+.+++.... .| .....+++.+-+.|.++|.+++. ...++.. ......+.+
T Consensus 129 ~~~~--------~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~-~i~~~~~-----~~~~~~R~~ 194 (333)
T 3jvd_A 129 VGSI--------APEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLTESVLGGSGMNIA-ALVGEES-----LSTTQERMR 194 (333)
T ss_dssp TTCC--------C-CCSCEEEECC----CCSCEEEECHHHHHHHHHHHHCCSSSCEEE-EEESCTT-----SHHHHHHHH
T ss_pred HHHH--------hhCCCCEEEECccCCCCCCCEEEEChHHHHHHHHHHHHHCCCCeEE-EEeCCCC-----CccHHHHHH
Confidence 1111 113555666653211 11 13445777777888888888764 2333221 234556677
Q ss_pred HHHHHHHh
Q 015866 151 SLWRRLHQ 158 (399)
Q Consensus 151 ~l~~~l~~ 158 (399)
.+.+++.+
T Consensus 195 Gf~~al~~ 202 (333)
T 3jvd_A 195 GISHAASI 202 (333)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777754
No 240
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=22.54 E-value=66 Score=29.50 Aligned_cols=38 Identities=18% Similarity=0.055 Sum_probs=29.3
Q ss_pred CeEEEEEE--CCCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 7 NKLLILYA--SQTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 7 ~~v~IlY~--S~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
|+|+++-. ...|-++..+..+++.|.++|++|.++...
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 40 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQS 40 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESE
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecC
Confidence 45665522 236889999999999999999999988765
No 241
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=22.35 E-value=1.6e+02 Score=26.87 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=37.4
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
|.-+| ..-|...|..... .++++++.|+|.| ++++.+...|.+.|++.+
T Consensus 106 G~NTD-~~G~~~~l~~~~~---~l~~k~vlVlGaG--------G~g~aia~~L~~~G~~~v 154 (283)
T 3jyo_A 106 GHNTD-VSGFGRGMEEGLP---NAKLDSVVQVGAG--------GVGNAVAYALVTHGVQKL 154 (283)
T ss_dssp EECHH-HHHHHHHHHHHCT---TCCCSEEEEECCS--------HHHHHHHHHHHHTTCSEE
T ss_pred EecCC-HHHHHHHHHHhCc---CcCCCEEEEECCc--------HHHHHHHHHHHHCCCCEE
Confidence 44444 7789988875432 4789999999986 678888889999998654
No 242
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=22.34 E-value=86 Score=28.63 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=26.0
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
.+.+++++|+|+| .+++.+.+.|..+|++.+
T Consensus 154 ~l~g~~v~IiG~G--------~iG~~~a~~l~~~G~~V~ 184 (300)
T 2rir_A 154 TIHGSQVAVLGLG--------RTGMTIARTFAALGANVK 184 (300)
T ss_dssp CSTTSEEEEECCS--------HHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEEccc--------HHHHHHHHHHHHCCCEEE
Confidence 5789999999986 578888899999998644
No 243
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=22.34 E-value=1.7e+02 Score=26.55 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=38.3
Q ss_pred CCCchhHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 67 G~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
|.=+ +..-|++.|.+... .++++++.|+|.| +++|.+-..|.++|+..+.
T Consensus 104 G~NT-D~~Gf~~~L~~~g~---~~~~~~~lilGaG--------Gaarai~~aL~~~g~~~i~ 153 (269)
T 3tum_A 104 GDNV-DGAGFLGAAHKHGF---EPAGKRALVIGCG--------GVGSAIAYALAEAGIASIT 153 (269)
T ss_dssp EECC-HHHHHHHHHHHTTC---CCTTCEEEEECCS--------HHHHHHHHHHHHTTCSEEE
T ss_pred EEEc-ChHHHHHHHHHhCC---CcccCeEEEEecH--------HHHHHHHHHHHHhCCCeEE
Confidence 3334 37789998876533 4689999999986 6788888999999987653
No 244
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=22.29 E-value=3.7e+02 Score=24.26 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=43.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEE--EeCCCCCcCC----C--CCCCeEEEEeecCCCCCCchhHHHHH
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVV--RPVDDYDARC----L--PEEDTVIFVVSTTGQGDTPDSMKVFW 77 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v--~~l~~~~~~~----l--~~~~~ii~~~sT~g~G~~p~~~~~f~ 77 (399)
-+++.|+|++........++.+.+.+++.|+++.. ++....+... + .+.+ +||+.. + +..+..|+
T Consensus 149 ~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d-~v~~~~-~-----~~~a~~~~ 221 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPD-AIYITG-Y-----YPEIALIS 221 (366)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCS-EEEECS-C-----HHHHHHHH
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCC-EEEEcc-c-----hhHHHHHH
Confidence 47899999876667777889999999999986532 2222222111 1 2334 344322 2 23677888
Q ss_pred HHHHhc
Q 015866 78 RFLLQK 83 (399)
Q Consensus 78 ~~L~~~ 83 (399)
+.+.+.
T Consensus 222 ~~~~~~ 227 (366)
T 3td9_A 222 RQARQL 227 (366)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 888764
No 245
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.86 E-value=4.4e+02 Score=23.72 Aligned_cols=131 Identities=12% Similarity=0.068 Sum_probs=76.7
Q ss_pred CCeEEEEEECCCc--hHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-------CC----CCCCeEEEEeecCCCCCCchh
Q 015866 6 RNKLLILYASQTG--NALDAAERIGRESERRGCPVVVRPVDDYDAR-------CL----PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 6 ~~~v~IlY~S~tG--~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-------~l----~~~~~ii~~~sT~g~G~~p~~ 72 (399)
.++|.+++.+... --..+.+-+.+.+++.|+.+.+.+.+. +.+ .+ ...+.||+. +.. ..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~~i~~~~~vDgiIi~-~~~------~~ 74 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAER-DPQNTLQQARELFQGRDKPDYLMLV-NEQ------YV 74 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHSSSCCSEEEEE-CCS------SH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHhcCCCCCEEEEe-Cch------hh
Confidence 3568888877665 457788888899999999988886643 211 11 256777774 321 13
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCCC----------------ch----hHHHHHHHHHHHHHhCC------C-e
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG----------------YQ----KFNFVAKKLDNRLLDLG------A-T 125 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~----------------y~----~f~~~~k~l~~~L~~lG------a-~ 125 (399)
....++.+.. .|..+.+++..... .. ....+++.+.+.|.+.| . .
T Consensus 75 ~~~~~~~~~~--------~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~ 146 (350)
T 3h75_A 75 APQILRLSQG--------SGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGI 146 (350)
T ss_dssp HHHHHHHHTT--------SCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCE
T ss_pred HHHHHHHHHh--------CCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 4456666543 35566666643211 11 23456777777777766 3 4
Q ss_pred eeccceeecCCCCCCcccchhhHHHHHHHHHHh
Q 015866 126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (399)
Q Consensus 126 ~~~~~~~~D~~~~~g~~~~~~~W~~~l~~~l~~ 158 (399)
++. ...++.. ......+.+.+.+++.+
T Consensus 147 ~i~-~i~g~~~-----~~~~~~R~~Gf~~~l~~ 173 (350)
T 3h75_A 147 ELL-AFSGLKV-----TPAAQLRERGLRRALAE 173 (350)
T ss_dssp EEE-EEESCTT-----SHHHHHHHHHHHHHHHH
T ss_pred eEE-EEeCCCC-----CHHHHHHHHHHHHHHHH
Confidence 443 2233322 23455677777777754
No 246
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=21.75 E-value=2e+02 Score=26.42 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------CCCCC---e-EE-EEeecCCC-CCCchhHHHHHHHHHhccCCc
Q 015866 21 LDAAERIGRESERRGCPVVVRPVDDYDARC-------LPEED---T-VI-FVVSTTGQ-GDTPDSMKVFWRFLLQKSLSK 87 (399)
Q Consensus 21 e~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l~~~~---~-ii-~~~sT~g~-G~~p~~~~~f~~~L~~~~~~~ 87 (399)
..+|++|++.+...|+++....--.+|-.- ....+ . || +...+... ...+....+|-+.|....
T Consensus 100 peLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~p~~~~~~~~~lG~aL~~~~--- 176 (302)
T 1b4u_B 100 PDLAWHIAQSLILDEFDMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAV--- 176 (302)
T ss_dssp HHHHHHHHHHHHHTTCCCEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSSCCCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCCeeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH---
Confidence 689999999999999887643211121000 02222 2 33 33222211 111345566777765421
Q ss_pred ccc-CCceEEEEecCCCCc
Q 015866 88 QWL-EGVRYAVFGLGDSGY 105 (399)
Q Consensus 88 ~~l-~~~~~avfGlGds~y 105 (399)
..+ .++++.|+|+||-+.
T Consensus 177 ~~~~~d~~VlIIgSG~lSH 195 (302)
T 1b4u_B 177 ESFPEDLNVHVWGTGGMSH 195 (302)
T ss_dssp HTSSSCCEEEEEEECCSSC
T ss_pred HhcCCCCCEEEEEeCcccc
Confidence 012 578999999998764
No 247
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=21.47 E-value=61 Score=28.33 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=36.6
Q ss_pred CCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhc
Q 015866 317 PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA 360 (399)
Q Consensus 317 ~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~ 360 (399)
.-.|.++|..||+-++ ....|-..|..|+.+..+++-+..|-
T Consensus 159 De~Lq~~l~~yLeeRG--I~~~la~fl~~y~~~KE~~eYi~WL~ 200 (209)
T 1p32_A 159 DWALYDHLMDFLADRG--VDNTFADELVELSTALEHQEYITFLE 200 (209)
T ss_dssp CHHHHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999 79999999999999888887777765
No 248
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=21.45 E-value=70 Score=26.40 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=32.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD 44 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~ 44 (399)
..|.|.|||.++-.+.+-+-|+..+.+..+.+.++...
T Consensus 36 e~I~vyygs~eaY~~Gi~~lL~~yaeK~~i~asl~~fs 73 (157)
T 3o6q_A 36 EPIHVYYGSIDAYAEGIDKLLKTYADKMNLTASLCHYS 73 (157)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTTTSEEEEEECS
T ss_pred CceEEEeccHHHHHHHHHHHHHHHHHhcCceeeeccCC
Confidence 46899999999999999999999988887777776654
No 249
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=21.39 E-value=1.2e+02 Score=23.67 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=58.9
Q ss_pred CCeEEEEEECCCchHH-HHHHHHHHHHHhcC--CCcEEEeCCCCCcCCCCCCCeEEEEeecCCCCCCchhHHHHHHHHHh
Q 015866 6 RNKLLILYASQTGNAL-DAAERIGRESERRG--CPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te-~~A~~l~~~l~~~g--~~~~v~~l~~~~~~~l~~~~~ii~~~sT~g~G~~p~~~~~f~~~L~~ 82 (399)
.+++.|+..|..-.+. .+|-..+..+.++| .+|+++=...-. .|. + ..++.+..++.+.+
T Consensus 7 ~~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v--~L~----------~-----~~~~l~~~~~~~~~ 69 (117)
T 2fb6_A 7 NDKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASV--KLV----------A-----NDTQVQTEILEMLQ 69 (117)
T ss_dssp TSEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHH--HHH----------H-----HCHHHHHHHHHHHH
T ss_pred CCeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCee--eec----------c-----CCccHHHHHHHHHH
Confidence 4788888888433332 35788888888888 477765443211 111 0 11346677776654
Q ss_pred ccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 83 ~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.|..+++++ .|.-.+.+.+.+...|.+.+.
T Consensus 70 --------~Gv~~~aC~--------~Ca~~~gv~~~l~~~gi~l~~ 99 (117)
T 2fb6_A 70 --------SGITIEACQ--------DCCENFGVASIITNLGITVRY 99 (117)
T ss_dssp --------HTCEEEEEH--------HHHHHHTCHHHHHHTTCEEEC
T ss_pred --------cCCeEEEeH--------HHHHHcCCcHHHHhCCceEcC
Confidence 367777776 688888899999998987763
No 250
>2x3g_A SIRV1 hypothetical protein ORF119; viral protein, HOST membrane; 1.80A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.37 E-value=92 Score=23.67 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEeCCCCC
Q 015866 16 QTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (399)
Q Consensus 16 ~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~ 47 (399)
.+|+||++-+++...+....-.+.+..+.+..
T Consensus 26 kyg~T~kiFrk~~~~i~~~DkN~~v~Sikett 57 (119)
T 2x3g_A 26 KYGDTEKIFRKFRSYIYNHDKNSHVFSIKETT 57 (119)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTTCEEEEEEEC-
T ss_pred ccCCHHHHHHHHHHHHHhcCCCceEEEeeccc
Confidence 47899999999999998877778888886654
No 251
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=21.35 E-value=69 Score=30.28 Aligned_cols=56 Identities=25% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEE-eCCCCCcCCCCCCCeEEEEeec
Q 015866 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVR-PVDDYDARCLPEEDTVIFVVST 63 (399)
Q Consensus 6 ~~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~-~l~~~~~~~l~~~~~ii~~~sT 63 (399)
-.++.|++-| .+...+|++|++.+...|..+..+ ++.+.-.+.+..++.+||+++|
T Consensus 8 ~r~~Aiia~T--~~G~~lA~rl~~~l~~~~~~~~~~~~~~~~~~~~f~~~d~iIfI~A~ 64 (336)
T 3eeq_A 8 WRGICIISAS--EDAFSAGETIKEKLKSFEIPVVHYRYKDAEIETIWKCYDAIVFVMAL 64 (336)
T ss_dssp TTCEEEEECS--HHHHHHHHHHHHHHHHTTCCEEEEEGGGCCHHHHTTTCSEEEEESCH
T ss_pred ccceEEEEEC--hHHHHHHHHHHHhcCcCCceEEecCCHHHHHHHHhcCCCeEEEEeCh
Confidence 3456666554 455679999999997655554432 2333323345689999999997
No 252
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=21.33 E-value=98 Score=26.02 Aligned_cols=38 Identities=13% Similarity=-0.063 Sum_probs=29.4
Q ss_pred eEEEEecCCCCc-hhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 94 RYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 94 ~~avfGlGds~y-~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
+++|||.....- +.|..+++.+-+.|.+.|...++..+
T Consensus 3 ~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~Ggg 41 (171)
T 1weh_A 3 LLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGY 41 (171)
T ss_dssp EEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCS
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCCh
Confidence 689999654433 25788999999999999988887544
No 253
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=21.26 E-value=4.1e+02 Score=23.09 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=67.8
Q ss_pred ccccCCeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEE-eCCCCCcCC-------C--CCCCeEEEEeecCCCCCCc
Q 015866 2 REEKRNKLLILYASQ-TGNALDAAERIGRESERRGCPVVVR-PVDDYDARC-------L--PEEDTVIFVVSTTGQGDTP 70 (399)
Q Consensus 2 ~~~~~~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~-~l~~~~~~~-------l--~~~~~ii~~~sT~g~G~~p 70 (399)
+..+...|.|+.... ...-..+.+.+.+.+++.|+.+.+. +.+. +.+. + ...+.+|+..+.. .
T Consensus 4 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~-~---- 77 (290)
T 3clk_A 4 VKKSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLTAIERPVMGILLLSIAL-T---- 77 (290)
T ss_dssp ----CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-----------CHHHHHHSSCCSEEEEESCC-------
T ss_pred ccccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHHHHhcCCCEEEEecccC-C----
Confidence 334456677776543 3345677888888889999988776 5432 1111 1 2466676654322 1
Q ss_pred hhHHHHHHHHHhccCCccccCCceEEEEecCCC---Cc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccch
Q 015866 71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS---GY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL 145 (399)
Q Consensus 71 ~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds---~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~ 145 (399)
+ ..++.+.. .+..+.+++.... .| ...-.+++.+.+.|.+.|.+++.= ..++.. ....
T Consensus 78 ~---~~~~~l~~--------~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~-i~~~~~-----~~~~ 140 (290)
T 3clk_A 78 D---DNLQLLQS--------SDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEGHRQIGI-AGIDQY-----PYTG 140 (290)
T ss_dssp -----CHHHHHC--------C--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTTCCSEEE-ESCCCC-----TTTH
T ss_pred H---HHHHHHHh--------CCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHHcCCCEEEE-EeCCCC-----Ccch
Confidence 1 23444432 2444555553211 11 124457788888888889887642 222221 1234
Q ss_pred hhHHHHHHHHHHh
Q 015866 146 DPWMRSLWRRLHQ 158 (399)
Q Consensus 146 ~~W~~~l~~~l~~ 158 (399)
..+.+.+.+++.+
T Consensus 141 ~~R~~gf~~~l~~ 153 (290)
T 3clk_A 141 RKRLAGYKKALKE 153 (290)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666777777754
No 254
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=21.22 E-value=4.1e+02 Score=23.11 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=72.1
Q ss_pred cCCeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcC-------CC--CCCCeEEEEeecCCCCCCchhHH
Q 015866 5 KRNKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDYDAR-------CL--PEEDTVIFVVSTTGQGDTPDSMK 74 (399)
Q Consensus 5 ~~~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~-------~l--~~~~~ii~~~sT~g~G~~p~~~~ 74 (399)
+...|.++..+. ...-..+.+.+.+.+.+.|+.+.+.+.+. +.+ .+ ...+.||+..... .. .
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgii~~~~~~-~~--~---- 90 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSED-QPDNEMRCIEHLLQRQVDAIIVSTSLP-PE--H---- 90 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSSC-TT--C----
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCC-Cc--H----
Confidence 345676666543 23345677888888889999888776543 211 11 2466666643321 11 1
Q ss_pred HHHHHHHhccCCccccCCceEEEEecCCC--Cch----hHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhH
Q 015866 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDS--GYQ----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPW 148 (399)
Q Consensus 75 ~f~~~L~~~~~~~~~l~~~~~avfGlGds--~y~----~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W 148 (399)
..++.+.. .+..+.+++.... .+. ..-.+++.+.+.|.++|.+++. ...++.. ......+
T Consensus 91 ~~~~~~~~--------~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~-~i~~~~~-----~~~~~~R 156 (293)
T 2iks_A 91 PFYQRWAN--------DPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETVL-YLGALPE-----LSVSFLR 156 (293)
T ss_dssp HHHHTTTT--------SSSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHTSCCSSEE-EEEECTT-----SHHHHHH
T ss_pred HHHHHHHh--------CCCCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHHCCCCEEE-EEecCcc-----cccHHHH
Confidence 23333322 3455666664211 111 3445777888888888988764 2233221 2234566
Q ss_pred HHHHHHHHH
Q 015866 149 MRSLWRRLH 157 (399)
Q Consensus 149 ~~~l~~~l~ 157 (399)
.+.+.+++.
T Consensus 157 ~~Gf~~~l~ 165 (293)
T 2iks_A 157 EQGFRTAWK 165 (293)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 677777774
No 255
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=21.21 E-value=2.9e+02 Score=21.36 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHHhccCCccccCCceEEEEecCCC---CchhHHHHHHHHHHHHHhCCCeeeccceeecCCCC
Q 015866 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS---GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 138 (399)
Q Consensus 68 ~~p~~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds---~y~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~ 138 (399)
...+-..++.+.|+. +|++|-+=.+|-. .|..-..+.+.+.+.+.+.|+.|+.-...+|..-+
T Consensus 22 svs~~Va~~i~vl~~--------sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~~G~~RV~t~iKId~R~d 87 (109)
T 1yqh_A 22 DVYSVVDKAIEVVQQ--------SGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITSIKIHYRPS 87 (109)
T ss_dssp CHHHHHHHHHHHHHH--------SCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCTT
T ss_pred cHHHHHHHHHHHHHH--------cCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCC
Confidence 455666777777764 3555544333311 37777788999999999999999999999998754
No 256
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=21.16 E-value=73 Score=27.48 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=28.9
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHh-c-CCCcEEEeCC
Q 015866 8 KLLILYASQTGNALDAAERIGRESER-R-GCPVVVRPVD 44 (399)
Q Consensus 8 ~v~IlY~S~tG~te~~A~~l~~~l~~-~-g~~~~v~~l~ 44 (399)
++.|+|.+ +...+.+|+.|++.|++ . |+++++..++
T Consensus 100 ~l~l~~~~-~~~~~~~a~~i~~~l~~~i~GI~v~i~~~~ 137 (229)
T 3o6p_A 100 TMDILSSD-ADSSKKTVEFVQGSIQDALDGVKVTVSPVP 137 (229)
T ss_dssp EEEEEEEC-SHHHHHHHHHHHHHHHHHSTTEEEEEEEEC
T ss_pred EEEEEeCC-ChHHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 56777744 45678999999999999 8 9998887665
No 257
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=21.08 E-value=65 Score=27.55 Aligned_cols=43 Identities=5% Similarity=0.059 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhcccCCCCCcHHHHHHHHHhcCCHHHHHHHHhhc
Q 015866 316 VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA 360 (399)
Q Consensus 316 ~~~tl~~ll~~~lDl~~~~p~~~~l~~La~~a~d~~ek~~L~~l~ 360 (399)
-.-.|.++|..||+-++ .+..|-..|..|+.+..+++.+..|.
T Consensus 133 LDe~Lq~~l~~yLeeRG--I~~~la~fl~~y~~~KEq~EYi~WL~ 175 (182)
T 3jv1_A 133 LEDHLVDSFTSYLSARG--VNDTLANFIDQFSLWSEQADYEEWLS 175 (182)
T ss_dssp SCHHHHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999998 79999999999999888887777664
No 258
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.96 E-value=1.2e+02 Score=26.57 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=29.6
Q ss_pred ceEEEEecCCC-CchhHHHHHHHHHHHHHhCCCeeeccce
Q 015866 93 VRYAVFGLGDS-GYQKFNFVAKKLDNRLLDLGATAVVERG 131 (399)
Q Consensus 93 ~~~avfGlGds-~y~~f~~~~k~l~~~L~~lGa~~~~~~~ 131 (399)
++++|||.... .=+.|..+++.+-+.|.+.|...++..+
T Consensus 10 ~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg 49 (216)
T 1ydh_A 10 RKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGG 49 (216)
T ss_dssp SEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 47999963222 2357889999999999999998887544
No 259
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=20.85 E-value=76 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=26.9
Q ss_pred ccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeeec
Q 015866 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (399)
Q Consensus 89 ~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~~ 128 (399)
.+.|++++|+|+| .+|+.+.++++.+|++.++
T Consensus 254 ~l~GktVgIIG~G--------~IG~~vA~~l~~~G~~Viv 285 (479)
T 1v8b_A 254 LISGKIVVICGYG--------DVGKGCASSMKGLGARVYI 285 (479)
T ss_dssp CCTTSEEEEECCS--------HHHHHHHHHHHHHTCEEEE
T ss_pred ccCCCEEEEEeeC--------HHHHHHHHHHHhCcCEEEE
Confidence 5899999999976 4688889999999987653
No 260
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.76 E-value=4.2e+02 Score=23.01 Aligned_cols=129 Identities=11% Similarity=0.091 Sum_probs=70.9
Q ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCC-------C--CCCCeEEEEeecCCCCCCchh
Q 015866 7 NKLLILYAS-----QTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------L--PEEDTVIFVVSTTGQGDTPDS 72 (399)
Q Consensus 7 ~~v~IlY~S-----~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~-------l--~~~~~ii~~~sT~g~G~~p~~ 72 (399)
..|.++..+ ....-..+.+.+.+.+++.|+.+.+.+.+. +.+. + ...+.+|+..... . +
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~-~----~- 77 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSE-DRSQIDIYRDLIRSGNVDGFVLSSINY-N----D- 77 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCS-STTCCHHHHHHHHTTCCSEEEECSCCT-T----C-
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCC-chHHHHHHHHHHHcCCCCEEEEeecCC-C----c-
Confidence 456666554 234456788888899999999887765432 2211 1 2456666654322 1 1
Q ss_pred HHHHHHHHHhccCCccccCCceEEEEecCCC--C--c--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchh
Q 015866 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS--G--Y--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALD 146 (399)
Q Consensus 73 ~~~f~~~L~~~~~~~~~l~~~~~avfGlGds--~--y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~ 146 (399)
..++.+... +..+.+++.... . | ...-.+++.+.+.|.++|.+++.= ..++.. .....
T Consensus 78 --~~~~~l~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~-i~~~~~-----~~~~~ 141 (287)
T 3bbl_A 78 --PRVQFLLKQ--------KFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRGHRRIAI-LAWPED-----SRVGN 141 (287)
T ss_dssp --HHHHHHHHT--------TCCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHTCCCEEE-EECCTT-----CHHHH
T ss_pred --HHHHHHHhc--------CCCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCCCCeEEE-EeCCcc-----cccHH
Confidence 234445332 344555553211 1 1 123456777777888889887642 222221 22345
Q ss_pred hHHHHHHHHHHh
Q 015866 147 PWMRSLWRRLHQ 158 (399)
Q Consensus 147 ~W~~~l~~~l~~ 158 (399)
.+.+.+.+++.+
T Consensus 142 ~R~~Gf~~~l~~ 153 (287)
T 3bbl_A 142 DRLQGYLEAMQT 153 (287)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666777777764
No 261
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.54 E-value=25 Score=30.01 Aligned_cols=56 Identities=18% Similarity=0.026 Sum_probs=36.6
Q ss_pred ceEEEEecCCCCc--hhHHHHHHHHHHHHHhCCCeeeccceeecCCCCCCcccchhhHHH
Q 015866 93 VRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMR 150 (399)
Q Consensus 93 ~~~avfGlGds~y--~~f~~~~k~l~~~L~~lGa~~~~~~~~~D~~~~~g~~~~~~~W~~ 150 (399)
.+++|+-.||.-. .....-+..+.++|.++|++...-....|+... +.+.+++|.+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~--I~~~l~~a~~ 61 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDE--IGWAFRVALE 61 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHH--HHHHHHHHHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHH--HHHHHHHHHh
Confidence 6899999998532 134556778889999999987755555565422 4444444443
No 262
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=20.37 E-value=2.4e+02 Score=24.18 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCeEEEE-EECCCchHHHHHHHHHHHHHhcCCCcEEEeCCCCCcCCCCCCCeEEEEee
Q 015866 6 RNKLLIL-YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62 (399)
Q Consensus 6 ~~~v~Il-Y~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~~~~~~l~~~~~ii~~~s 62 (399)
+++++|+ +++.+ +..+++.| ++.|..+.++..+. +++++.+.+.||+-.+
T Consensus 13 ~~~i~~id~~~~~--~~~~~~~l----~~~G~~~~vv~~~~-~~~~l~~~DglIl~GG 63 (212)
T 2a9v_A 13 MLKIYVVDNGGQW--THREWRVL----RELGVDTKIVPNDI-DSSELDGLDGLVLSGG 63 (212)
T ss_dssp CCBEEEEEESCCT--TCHHHHHH----HHTTCBCCEEETTS-CGGGGTTCSEEEEEEE
T ss_pred cceEEEEeCCCcc--HHHHHHHH----HHCCCEEEEEeCCC-CHHHHhCCCEEEECCC
Confidence 5666665 44443 44455444 55688888887754 4566667787666544
No 263
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=20.34 E-value=1.3e+02 Score=20.20 Aligned_cols=35 Identities=6% Similarity=0.053 Sum_probs=23.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCCcEEEeCCC
Q 015866 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (399)
Q Consensus 7 ~~v~IlY~S~tG~te~~A~~l~~~l~~~g~~~~v~~l~~ 45 (399)
|++.+++.+..+.++++...+ .+.|++...++++.
T Consensus 1 m~i~~y~~~~C~~C~~~~~~l----~~~~i~~~~~di~~ 35 (75)
T 1r7h_A 1 MSITLYTKPACVQCTATKKAL----DRAGLAYNTVDISL 35 (75)
T ss_dssp CCEEEEECTTCHHHHHHHHHH----HHTTCCCEEEETTT
T ss_pred CeEEEEeCCCChHHHHHHHHH----HHcCCCcEEEECCC
Confidence 356666667778887765554 44677777777764
No 264
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=20.07 E-value=1.8e+02 Score=26.54 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhccCCccccCCceEEEEecCCCCchhHHHHHHHHHHHHHhCCCeee
Q 015866 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (399)
Q Consensus 72 ~~~~f~~~L~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~k~l~~~L~~lGa~~~ 127 (399)
....|...|.... ...+.++++.|+|.| .+++.+...|.+.|+..+
T Consensus 123 d~~G~~~~l~~~~--~~~l~~~~vlVlGaG--------g~g~aia~~L~~~G~~~V 168 (297)
T 2egg_A 123 DGLGYVQALEEEM--NITLDGKRILVIGAG--------GGARGIYFSLLSTAAERI 168 (297)
T ss_dssp HHHHHHHHHHHHT--TCCCTTCEEEEECCS--------HHHHHHHHHHHTTTCSEE
T ss_pred CHHHHHHHHHHhC--CCCCCCCEEEEECcH--------HHHHHHHHHHHHCCCCEE
Confidence 3678888886532 014789999999986 478888889999998544
No 265
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.04 E-value=4.4e+02 Score=23.00 Aligned_cols=133 Identities=8% Similarity=0.006 Sum_probs=75.1
Q ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhcCCCcEEEeCCCC-CcC-------CC--CCCCeEEEEeecCCCCCCchhHHH
Q 015866 7 NKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDY-DAR-------CL--PEEDTVIFVVSTTGQGDTPDSMKV 75 (399)
Q Consensus 7 ~~v~IlY~S~-tG~te~~A~~l~~~l~~~g~~~~v~~l~~~-~~~-------~l--~~~~~ii~~~sT~g~G~~p~~~~~ 75 (399)
.+|.|+..+. ...-..+.+-+.+.+++.|+.+.+.+.+.+ +.+ .+ ...+.||+. ++. ++....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~-~~~-----~~~~~~ 77 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATT-IPS-----DTAFSK 77 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEEC-CCC-----SSTTHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEe-CCC-----HHHHHH
Confidence 4455555443 444667788888888899999888876643 222 11 356666653 332 112344
Q ss_pred HHHHHHhccCCccccCCceEEEEecCCCC--------c--hhHHHHHHHHHHHHHhCC--CeeeccceeecCCCCCCccc
Q 015866 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSG--------Y--QKFNFVAKKLDNRLLDLG--ATAVVERGLGDDQHPSGYEG 143 (399)
Q Consensus 76 f~~~L~~~~~~~~~l~~~~~avfGlGds~--------y--~~f~~~~k~l~~~L~~lG--a~~~~~~~~~D~~~~~g~~~ 143 (399)
.++.+... |..+..++..... | .....+++.+.+.|.+.| .+++.- ..++.. ..
T Consensus 78 ~~~~~~~~--------giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~-i~g~~~-----~~ 143 (297)
T 3rot_A 78 SLQRANKL--------NIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALV-LNPQPG-----HI 143 (297)
T ss_dssp HHHHHHHH--------TCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEE-EESCTT-----CH
T ss_pred HHHHHHHC--------CCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcCCCceEEE-EeCCCC-----cH
Confidence 55565443 3445555532211 1 134567888888888888 666642 223322 23
Q ss_pred chhhHHHHHHHHHHhh
Q 015866 144 ALDPWMRSLWRRLHQI 159 (399)
Q Consensus 144 ~~~~W~~~l~~~l~~~ 159 (399)
....+.+.+.+++.+.
T Consensus 144 ~~~~R~~Gf~~~l~~~ 159 (297)
T 3rot_A 144 GLEKRAYGIKTILQDK 159 (297)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4556667777777653
Done!