BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015869
         (399 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8C0S4|TT21A_MOUSE Tetratricopeptide repeat protein 21A OS=Mus musculus GN=Ttc21a PE=1
           SV=2
          Length = 1314

 Score = 38.9 bits (89), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEF 370
           +LE A+  L RC+E +P   + H+++ QIYLA+G F
Sbjct: 509 ELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNF 544


>sp|Q8NDW8|TT21A_HUMAN Tetratricopeptide repeat protein 21A OS=Homo sapiens GN=TTC21A PE=2
           SV=3
          Length = 1320

 Score = 38.1 bits (87), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEF 370
           +LE A+ +L RC+E +P   + H+++ QIYLA+G F
Sbjct: 516 ELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 551


>sp|Q6INC1|TT21B_XENLA Tetratricopeptide repeat protein 21B OS=Xenopus laevis GN=ttc21b
           PE=2 SV=1
          Length = 1312

 Score = 33.9 bits (76), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 297 PVPPVFENCTRILDAKEQIE---ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV 353
           P+ P+ +    IL     +       LY+ A      G+   LE A+  L RCIE +   
Sbjct: 470 PLSPLLKQALSILTPVVSVAPALTEPLYYTAQIKYLAGN---LEGAQGSLQRCIEVDTAC 526

Query: 354 GEPHVVLGQIYLAKGEFEE 372
            + H+++ QI+ A+G+F E
Sbjct: 527 ADFHLLMAQIHYAQGKFAE 545


>sp|O31812|YNDH_BACSU Uncharacterized protein YndH OS=Bacillus subtilis (strain 168)
           GN=yndH PE=4 SV=1
          Length = 205

 Score = 33.5 bits (75), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 16/66 (24%)

Query: 322 WEAVCGNS-------DGSKEKLEKAEELLLRCIEKNPFVGEPHV---VLGQIYLAKGEFE 371
           W  +CG          G+ E  E  +E      +KN F  E HV   +LG ++  KG F+
Sbjct: 146 WLLICGKRIPLPKWLTGTSEVCETFDE------KKNCFTIEVHVQNTILGTLFFYKGTFQ 199

Query: 372 EAEREA 377
           E ERE+
Sbjct: 200 EEERES 205


>sp|Q5F3V0|SMYD4_CHICK SET and MYND domain-containing protein 4 OS=Gallus gallus GN=SMYD4
           PE=2 SV=1
          Length = 742

 Score = 33.1 bits (74), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 19/101 (18%)

Query: 307 RILDAKEQIE-ARDLYWEAVCGNSDGSKEKLEKAEELLLRC-IEKNPFVGEPHVVLG--- 361
           R+LD ++Q+E A +L  ++          K ++A ++LL+C I+   F+   H+++G   
Sbjct: 592 RLLDLQQQMEKALELLRDS----------KADEAIKMLLKCQIDARNFLSPEHLLMGELE 641

Query: 362 ----QIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMSWE 398
               Q+Y   G+++EA R  G+ + L+     P    M  E
Sbjct: 642 DHLAQVYATLGKWQEAARHLGRSIQLVEMHHGPSSVEMGHE 682


>sp|Q54Q80|Y4059_DICDI SET and MYND domain-containing protein DDB_G0284059 OS=Dictyostelium
            discoideum GN=DDB_G0284059 PE=3 SV=1
          Length = 1280

 Score = 32.3 bits (72), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 353  VGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS--PWDKRM 395
            +G  +  LGQIYL  GE E++E    K   +L+ W S  P D+ +
Sbjct: 1217 LGREYSKLGQIYLTLGEIEKSEDAIEKAESILMSWKSNDPTDEEV 1261


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,815,373
Number of Sequences: 539616
Number of extensions: 6949426
Number of successful extensions: 15878
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15868
Number of HSP's gapped (non-prelim): 21
length of query: 399
length of database: 191,569,459
effective HSP length: 120
effective length of query: 279
effective length of database: 126,815,539
effective search space: 35381535381
effective search space used: 35381535381
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)