Query 015869
Match_columns 399
No_of_seqs 70 out of 72
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 01:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13432 TPR_16: Tetratricopep 96.7 0.0038 8.3E-08 45.9 5.1 50 334-383 11-60 (65)
2 PF13414 TPR_11: TPR repeat; P 96.6 0.0051 1.1E-07 45.4 5.2 51 333-383 16-67 (69)
3 PF14559 TPR_19: Tetratricopep 96.5 0.0038 8.2E-08 45.8 3.8 47 335-381 6-52 (68)
4 PF13431 TPR_17: Tetratricopep 96.1 0.0037 8E-08 42.9 1.9 33 343-375 2-34 (34)
5 TIGR02521 type_IV_pilW type IV 95.1 0.036 7.8E-07 46.4 4.9 50 334-383 45-94 (234)
6 PF13371 TPR_9: Tetratricopept 95.0 0.069 1.5E-06 39.7 5.6 50 334-383 9-58 (73)
7 PRK10866 outer membrane biogen 95.0 0.042 9.2E-07 52.0 5.3 79 302-383 17-98 (243)
8 PF13328 HD_4: HD domain; PDB: 94.9 0.042 9.1E-07 48.1 4.9 73 47-129 10-82 (153)
9 TIGR02552 LcrH_SycD type III s 94.9 0.046 9.9E-07 44.6 4.7 48 336-383 67-114 (135)
10 PRK12370 invasion protein regu 94.7 0.11 2.5E-06 54.0 8.2 48 336-383 320-367 (553)
11 PLN03088 SGT1, suppressor of 94.4 0.068 1.5E-06 53.1 5.5 51 334-384 50-100 (356)
12 TIGR02552 LcrH_SycD type III s 94.3 0.12 2.7E-06 42.1 5.9 63 318-383 18-80 (135)
13 COG4235 Cytochrome c biogenesi 94.2 0.11 2.3E-06 52.0 6.3 54 331-384 133-186 (287)
14 PRK11189 lipoprotein NlpI; Pro 94.1 0.084 1.8E-06 50.6 5.3 78 303-383 47-127 (296)
15 PRK15359 type III secretion sy 94.1 0.14 3E-06 44.3 6.1 49 335-383 73-121 (144)
16 TIGR03302 OM_YfiO outer membra 94.0 0.09 1.9E-06 47.1 5.0 80 301-383 13-99 (235)
17 cd00189 TPR Tetratricopeptide 93.9 0.13 2.8E-06 35.6 4.6 50 334-383 48-97 (100)
18 PRK15359 type III secretion sy 93.7 0.1 2.2E-06 45.1 4.6 54 333-386 37-90 (144)
19 PRK12370 invasion protein regu 93.3 0.27 5.9E-06 51.2 7.7 73 311-383 317-401 (553)
20 PRK10370 formate-dependent nit 93.3 0.19 4.1E-06 46.1 5.8 49 336-384 126-174 (198)
21 TIGR02521 type_IV_pilW type IV 93.1 0.26 5.6E-06 41.3 5.9 50 334-383 149-198 (234)
22 PRK10370 formate-dependent nit 93.0 0.23 5E-06 45.5 6.0 47 336-382 55-101 (198)
23 PLN03088 SGT1, suppressor of 92.8 0.21 4.5E-06 49.7 5.7 50 334-383 16-65 (356)
24 TIGR02795 tol_pal_ybgF tol-pal 92.6 0.29 6.2E-06 38.2 5.2 47 336-382 18-67 (119)
25 cd00189 TPR Tetratricopeptide 92.1 0.29 6.2E-06 33.9 4.2 49 335-383 15-63 (100)
26 PRK10153 DNA-binding transcrip 91.8 0.25 5.5E-06 52.1 5.2 49 334-383 434-482 (517)
27 TIGR02917 PEP_TPR_lipo putativ 91.4 0.33 7.1E-06 49.2 5.3 48 335-382 37-84 (899)
28 PRK09782 bacteriophage N4 rece 91.2 0.3 6.5E-06 55.5 5.3 67 314-383 41-107 (987)
29 PRK11788 tetratricopeptide rep 90.7 0.53 1.2E-05 44.8 5.8 49 335-383 195-243 (389)
30 TIGR02917 PEP_TPR_lipo putativ 90.7 0.57 1.2E-05 47.5 6.2 48 335-382 140-187 (899)
31 cd05804 StaR_like StaR_like; a 90.5 0.51 1.1E-05 44.5 5.4 47 336-382 130-176 (355)
32 PF03704 BTAD: Bacterial trans 90.3 0.97 2.1E-05 38.1 6.4 56 335-390 77-133 (146)
33 PRK11788 tetratricopeptide rep 89.7 0.53 1.2E-05 44.8 4.9 46 336-381 51-96 (389)
34 CHL00033 ycf3 photosystem I as 89.6 0.97 2.1E-05 39.2 6.0 51 334-384 86-143 (168)
35 PF07719 TPR_2: Tetratricopept 89.1 0.63 1.4E-05 29.9 3.5 29 355-383 2-30 (34)
36 PF12688 TPR_5: Tetratrico pep 88.9 2 4.3E-05 37.4 7.4 71 311-381 14-102 (120)
37 PF12569 NARP1: NMDA receptor- 88.6 0.65 1.4E-05 49.4 5.1 48 336-383 210-257 (517)
38 PF13428 TPR_14: Tetratricopep 88.6 0.67 1.5E-05 32.6 3.6 28 356-383 3-30 (44)
39 PF07721 TPR_4: Tetratricopept 88.4 0.44 9.5E-06 30.7 2.3 23 356-378 3-25 (26)
40 PRK02603 photosystem I assembl 88.2 1.2 2.5E-05 39.0 5.6 49 335-383 50-101 (172)
41 PF13512 TPR_18: Tetratricopep 87.7 1 2.3E-05 40.9 5.1 68 313-383 6-76 (142)
42 PF12895 Apc3: Anaphase-promot 87.3 0.4 8.8E-06 37.1 2.0 56 320-379 28-83 (84)
43 TIGR00990 3a0801s09 mitochondr 87.0 1.2 2.5E-05 46.7 5.8 52 334-385 522-573 (615)
44 PF13525 YfiO: Outer membrane 86.8 1.3 2.7E-05 40.4 5.2 67 314-383 2-71 (203)
45 PRK11189 lipoprotein NlpI; Pro 86.7 1.4 3.1E-05 42.2 5.8 50 334-383 112-161 (296)
46 COG5010 TadD Flp pilus assembl 86.6 1.1 2.3E-05 44.5 4.9 49 336-384 116-164 (257)
47 TIGR00990 3a0801s09 mitochondr 86.6 1.3 2.9E-05 46.3 5.9 48 336-383 347-394 (615)
48 PRK11447 cellulose synthase su 86.2 1.5 3.2E-05 49.9 6.4 59 320-382 151-209 (1157)
49 PRK11447 cellulose synthase su 86.1 2.2 4.7E-05 48.6 7.7 50 334-383 365-414 (1157)
50 TIGR02795 tol_pal_ybgF tol-pal 85.7 3 6.4E-05 32.5 6.1 65 316-383 38-105 (119)
51 PLN03098 LPA1 LOW PSII ACCUMUL 85.1 1.8 3.8E-05 46.0 5.9 50 334-383 89-141 (453)
52 PF09295 ChAPs: ChAPs (Chs5p-A 84.0 1.3 2.8E-05 45.9 4.3 42 336-377 250-291 (395)
53 PF13374 TPR_10: Tetratricopep 83.9 1.5 3.2E-05 28.9 3.2 28 358-385 6-33 (42)
54 PRK09782 bacteriophage N4 rece 83.4 1.8 4E-05 49.4 5.5 74 309-383 553-638 (987)
55 PRK15174 Vi polysaccharide exp 83.2 2.9 6.3E-05 45.0 6.7 48 336-383 92-139 (656)
56 PF13424 TPR_12: Tetratricopep 83.1 2.5 5.4E-05 31.9 4.5 50 335-384 20-76 (78)
57 PRK11906 transcriptional regul 83.0 3.4 7.3E-05 44.0 6.9 74 310-383 316-401 (458)
58 TIGR03276 Phn-HD phosphonate d 82.7 4.4 9.6E-05 38.2 6.9 94 35-129 4-105 (179)
59 PF13181 TPR_8: Tetratricopept 82.3 2.4 5.1E-05 27.4 3.6 29 355-383 2-30 (34)
60 PRK15174 Vi polysaccharide exp 82.2 2.4 5.3E-05 45.5 5.7 48 335-382 299-346 (656)
61 CHL00033 ycf3 photosystem I as 81.6 4.2 9.1E-05 35.3 6.0 51 333-383 48-101 (168)
62 PRK10049 pgaA outer membrane p 81.1 2.9 6.3E-05 45.6 5.8 48 335-383 98-145 (765)
63 PRK15179 Vi polysaccharide bio 80.9 2.3 4.9E-05 46.9 5.0 48 336-383 102-149 (694)
64 smart00028 TPR Tetratricopepti 80.6 2.2 4.7E-05 24.4 2.7 29 355-383 2-30 (34)
65 PF09976 TPR_21: Tetratricopep 80.5 1.9 4.2E-05 36.8 3.4 46 334-380 99-144 (145)
66 PRK10747 putative protoheme IX 80.1 3.3 7.1E-05 41.5 5.4 47 336-382 310-356 (398)
67 KOG1840 Kinesin light chain [C 79.7 2.1 4.6E-05 45.8 4.1 48 339-386 267-315 (508)
68 PRK11092 bifunctional (p)ppGpp 79.3 6.7 0.00014 43.6 7.9 96 13-121 4-100 (702)
69 PRK02603 photosystem I assembl 78.9 4.3 9.3E-05 35.5 5.2 45 333-377 85-129 (172)
70 PF09295 ChAPs: ChAPs (Chs5p-A 78.8 3.6 7.8E-05 42.6 5.4 48 337-384 217-264 (395)
71 TIGR00691 spoT_relA (p)ppGpp s 77.3 5.8 0.00013 43.7 6.7 68 44-121 7-75 (683)
72 PF13429 TPR_15: Tetratricopep 76.4 6.3 0.00014 36.7 5.8 37 336-372 162-198 (280)
73 PRK10049 pgaA outer membrane p 76.4 4.7 0.0001 44.1 5.6 50 334-383 373-422 (765)
74 PRK10803 tol-pal system protei 76.2 5.7 0.00012 38.6 5.7 50 334-383 157-209 (263)
75 PF09976 TPR_21: Tetratricopep 76.0 10 0.00022 32.3 6.6 41 336-376 27-70 (145)
76 TIGR03302 OM_YfiO outer membra 75.8 16 0.00035 32.8 8.1 49 335-383 130-195 (235)
77 PF12895 Apc3: Anaphase-promot 75.5 3.3 7.2E-05 32.0 3.2 44 336-379 5-50 (84)
78 PRK10153 DNA-binding transcrip 75.5 8.5 0.00018 41.0 7.1 50 335-384 399-450 (517)
79 PRK10872 relA (p)ppGpp synthet 73.8 10 0.00022 42.7 7.4 91 13-119 17-108 (743)
80 PF00515 TPR_1: Tetratricopept 73.8 6 0.00013 25.6 3.6 27 357-383 4-30 (34)
81 PRK10747 putative protoheme IX 72.6 6.9 0.00015 39.2 5.4 50 335-385 343-392 (398)
82 PF13424 TPR_12: Tetratricopep 72.0 3.8 8.1E-05 30.9 2.7 36 354-389 5-40 (78)
83 PF13429 TPR_15: Tetratricopep 70.8 4.2 9E-05 37.9 3.2 50 335-384 229-278 (280)
84 PF13371 TPR_9: Tetratricopept 70.6 4 8.7E-05 30.2 2.5 24 360-383 1-24 (73)
85 PF13176 TPR_7: Tetratricopept 70.2 6.3 0.00014 26.8 3.2 27 358-384 3-29 (36)
86 COG0317 SpoT Guanosine polypho 68.5 14 0.0003 41.4 7.0 97 9-119 5-102 (701)
87 TIGR00540 hemY_coli hemY prote 65.6 13 0.00028 37.3 5.7 52 336-388 351-404 (409)
88 cd05804 StaR_like StaR_like; a 65.6 7.7 0.00017 36.6 3.9 48 336-383 96-143 (355)
89 TIGR00540 hemY_coli hemY prote 62.2 18 0.00039 36.3 6.0 46 336-381 169-214 (409)
90 PF13428 TPR_14: Tetratricopep 61.5 7.6 0.00017 27.2 2.3 29 335-363 16-44 (44)
91 PRK14574 hmsH outer membrane p 61.3 11 0.00025 42.4 4.8 49 335-383 117-165 (822)
92 PF14561 TPR_20: Tetratricopep 60.0 12 0.00026 31.0 3.6 42 340-381 8-49 (90)
93 PLN03077 Protein ECB2; Provisi 60.0 13 0.00029 40.6 4.9 49 336-388 673-721 (857)
94 PRK14574 hmsH outer membrane p 59.6 17 0.00036 41.2 5.7 45 336-380 50-94 (822)
95 PLN03081 pentatricopeptide (PP 59.5 13 0.00029 39.7 4.7 49 336-388 510-558 (697)
96 PRK11906 transcriptional regul 57.9 16 0.00034 39.2 4.8 49 319-367 257-308 (458)
97 KOG0553 TPR repeat-containing 56.3 24 0.00053 36.0 5.7 72 310-383 93-178 (304)
98 PF13414 TPR_11: TPR repeat; P 55.8 16 0.00034 26.7 3.3 27 357-383 6-32 (69)
99 PRK04841 transcriptional regul 55.7 24 0.00053 38.2 6.0 55 335-389 506-566 (903)
100 PF12688 TPR_5: Tetratrico pep 55.5 30 0.00065 30.1 5.5 61 318-382 2-66 (120)
101 COG3063 PilF Tfp pilus assembl 55.1 18 0.00038 36.1 4.4 86 296-383 10-98 (250)
102 PF04910 Tcf25: Transcriptiona 52.6 42 0.00091 34.2 6.7 63 313-385 9-71 (360)
103 COG3063 PilF Tfp pilus assembl 51.9 18 0.00038 36.1 3.8 43 334-376 153-195 (250)
104 KOG0547 Translocase of outer m 51.2 22 0.00048 39.0 4.7 169 191-383 351-566 (606)
105 TIGR03362 VI_chp_7 type VI sec 51.0 69 0.0015 32.2 7.9 81 297-386 83-164 (301)
106 COG4235 Cytochrome c biogenesi 50.3 34 0.00074 34.6 5.6 55 317-378 197-251 (287)
107 cd02677 MIT_SNX15 MIT: domain 48.9 34 0.00075 27.7 4.5 37 336-387 3-39 (75)
108 PF13432 TPR_16: Tetratricopep 48.2 14 0.00029 27.0 1.9 25 359-383 2-26 (65)
109 PRK10803 tol-pal system protei 47.9 37 0.00079 33.2 5.3 69 311-382 174-245 (263)
110 cd02684 MIT_2 MIT: domain cont 46.9 43 0.00094 27.0 4.7 38 335-387 2-39 (75)
111 cd02678 MIT_VPS4 MIT: domain c 45.4 52 0.0011 26.1 4.9 37 336-387 3-39 (75)
112 PRK10885 cca multifunctional t 45.4 29 0.00064 35.9 4.5 40 47-86 218-257 (409)
113 PF09613 HrpB1_HrpK: Bacterial 44.8 55 0.0012 30.5 5.7 55 318-378 14-68 (160)
114 KOG1156 N-terminal acetyltrans 44.4 20 0.00043 40.1 3.2 73 310-382 360-433 (700)
115 COG4783 Putative Zn-dependent 43.8 25 0.00053 38.0 3.7 46 336-381 356-401 (484)
116 PF13174 TPR_6: Tetratricopept 43.6 25 0.00053 22.1 2.4 25 358-382 4-28 (33)
117 PF10516 SHNi-TPR: SHNi-TPR; 42.1 49 0.0011 23.9 3.9 31 356-386 3-33 (38)
118 smart00745 MIT Microtubule Int 41.6 67 0.0015 25.0 5.0 37 336-387 5-41 (77)
119 PRK15179 Vi polysaccharide bio 41.0 64 0.0014 36.0 6.4 46 336-381 136-181 (694)
120 cd00077 HDc Metal dependent ph 39.1 18 0.0004 28.0 1.5 31 56-86 2-40 (145)
121 KOG1840 Kinesin light chain [C 39.0 42 0.00091 36.3 4.6 52 334-385 213-272 (508)
122 COG2956 Predicted N-acetylgluc 38.3 63 0.0014 34.1 5.5 64 316-381 178-241 (389)
123 PRK04841 transcriptional regul 38.3 47 0.001 36.0 4.8 54 336-389 707-766 (903)
124 PRK15363 pathogenicity island 37.6 1E+02 0.0022 28.7 6.2 50 332-381 81-130 (157)
125 COG4105 ComL DNA uptake lipopr 37.4 70 0.0015 32.0 5.5 77 304-383 19-100 (254)
126 smart00471 HDc Metal dependent 37.2 20 0.00042 27.4 1.3 34 55-88 3-42 (124)
127 PF11267 DUF3067: Protein of u 37.1 21 0.00046 31.1 1.7 31 49-79 40-70 (99)
128 smart00386 HAT HAT (Half-A-TPR 36.3 68 0.0015 19.6 3.5 28 336-363 3-30 (33)
129 cd02683 MIT_1 MIT: domain cont 34.9 82 0.0018 25.6 4.6 36 337-387 4-39 (77)
130 PRK15363 pathogenicity island 34.7 66 0.0014 29.9 4.6 50 334-383 49-98 (157)
131 TIGR03504 FimV_Cterm FimV C-te 33.4 53 0.0012 24.4 3.0 24 358-381 3-26 (44)
132 TIGR00277 HDIG uncharacterized 32.0 29 0.00063 25.6 1.5 34 55-89 3-41 (80)
133 cd02656 MIT MIT: domain contai 31.7 1.2E+02 0.0026 23.7 5.0 38 336-388 3-40 (75)
134 PF01966 HD: HD domain; Inter 31.4 21 0.00046 27.9 0.7 29 58-86 2-37 (122)
135 PF09797 NatB_MDM20: N-acetylt 31.1 1.7E+02 0.0036 29.3 7.0 67 308-376 171-239 (365)
136 PF11846 DUF3366: Domain of un 31.0 1.6E+02 0.0034 26.6 6.3 52 330-384 121-174 (193)
137 KOG4626 O-linked N-acetylgluco 30.9 49 0.0011 37.7 3.5 50 334-383 436-485 (966)
138 PF12862 Apc5: Anaphase-promot 30.9 2.1E+02 0.0046 23.2 6.5 33 356-388 43-75 (94)
139 COG4783 Putative Zn-dependent 30.8 79 0.0017 34.4 4.9 76 297-383 292-369 (484)
140 PF10373 EST1_DNA_bind: Est1 D 30.0 1.1E+02 0.0025 28.0 5.3 38 339-376 1-38 (278)
141 cd07910 MiaE MiaE tRNA-modifyi 29.5 25 0.00054 33.6 0.9 67 133-205 39-114 (180)
142 PRK00260 cysS cysteinyl-tRNA s 29.3 41 0.0009 35.2 2.6 23 236-260 193-215 (463)
143 KOG0495 HAT repeat protein [RN 28.3 52 0.0011 37.6 3.2 48 336-383 667-714 (913)
144 TIGR02561 HrpB1_HrpK type III 26.9 1E+02 0.0022 28.8 4.4 53 318-376 14-66 (153)
145 KOG1174 Anaphase-promoting com 26.4 1.1E+02 0.0024 33.5 5.0 50 334-383 418-467 (564)
146 cd02680 MIT_calpain7_2 MIT: do 25.9 1.2E+02 0.0027 24.9 4.3 36 336-386 3-38 (75)
147 KOG0548 Molecular co-chaperone 25.7 2E+02 0.0044 31.7 6.9 75 307-383 11-99 (539)
148 PF04733 Coatomer_E: Coatomer 25.4 60 0.0013 32.0 2.8 25 355-379 132-156 (290)
149 KOG2076 RNA polymerase III tra 24.9 1.3E+02 0.0027 35.1 5.5 45 335-379 154-198 (895)
150 PRK14536 cysS cysteinyl-tRNA s 23.8 67 0.0015 34.5 3.0 25 235-261 205-229 (490)
151 cd02681 MIT_calpain7_1 MIT: do 22.6 1.9E+02 0.0041 23.7 4.7 35 337-386 4-38 (76)
152 PF04695 Pex14_N: Peroxisomal 22.1 59 0.0013 28.8 1.9 35 14-49 3-37 (136)
153 PLN03098 LPA1 LOW PSII ACCUMUL 21.2 97 0.0021 33.4 3.5 35 349-383 70-104 (453)
154 KOG1157 Predicted guanosine po 20.2 1.3E+02 0.0029 32.6 4.2 58 54-120 96-154 (543)
155 COG0457 NrfG FOG: TPR repeat [ 20.0 3.9E+02 0.0085 20.5 5.8 47 336-382 111-158 (291)
No 1
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.68 E-value=0.0038 Score=45.86 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|++.++++++.+|-..+=+..||++|...|++++|...-++++++
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999888877764
No 2
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.58 E-value=0.0051 Score=45.43 Aligned_cols=51 Identities=33% Similarity=0.449 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccC-CcHHHHHHHHHHHHH
Q 015869 333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKG-EFEEAEREAGKGLML 383 (399)
Q Consensus 333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~g-r~~eA~~~A~~gL~l 383 (399)
....+.|...+.++|++||--.++++-+|.+|...| ++++|....+++|++
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 345889999999999999999999999999999999 899999999999986
No 3
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.46 E-value=0.0038 Score=45.84 Aligned_cols=47 Identities=34% Similarity=0.547 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
..+.|.+++++++..||--.+-++.||++|+..|++++|+..-++.+
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998766544
No 4
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.08 E-value=0.0037 Score=42.92 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=31.0
Q ss_pred HHHHHhhCCCcCchHHHHHHHHhccCCcHHHHH
Q 015869 343 LLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAER 375 (399)
Q Consensus 343 L~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~ 375 (399)
.++||++||--.+.+.-||.+|+..|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 579999999999999999999999999999963
No 5
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.15 E-value=0.036 Score=46.40 Aligned_cols=50 Identities=32% Similarity=0.347 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|.+.++++++.+|-..+.+..+|.+|...|++++|....++++++
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34778888888888888888888888899999899998888888887765
No 6
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.05 E-value=0.069 Score=39.67 Aligned_cols=50 Identities=30% Similarity=0.360 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..++.|.+.++++++.||=--.++.-+|.+|...|+|++|.+.-+..|+.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999998888754
No 7
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.96 E-value=0.042 Score=52.05 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=61.1
Q ss_pred cccccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchH---HHHHHHHhccCCcHHHHHHHH
Q 015869 302 FENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPH---VVLGQIYLAKGEFEEAEREAG 378 (399)
Q Consensus 302 F~~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~---~vLAQ~~l~~gr~~eA~~~A~ 378 (399)
|.+|+.--+...+..+..+|+++.. .-.....+.|.+.+++.+...|.-..-. +-||++|.+.|+|++|....+
T Consensus 17 lsgCs~~~~~~~~~~~~~~Y~~A~~---~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e 93 (243)
T PRK10866 17 LAGCSGSKEEVPDNPPSEIYATAQQ---KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID 93 (243)
T ss_pred HhhcCCCCcCCCCCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6678542222223578889999986 3344568999999999999999775444 678999999999999999999
Q ss_pred HHHHH
Q 015869 379 KGLML 383 (399)
Q Consensus 379 ~gL~l 383 (399)
+-+++
T Consensus 94 ~fi~~ 98 (243)
T PRK10866 94 RFIRL 98 (243)
T ss_pred HHHHh
Confidence 88775
No 8
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=94.94 E-value=0.042 Score=48.07 Aligned_cols=73 Identities=14% Similarity=0.278 Sum_probs=51.1
Q ss_pred CCccccCCCChHhhHHHHHHHHHhcCCchHHHHhccchhcccCccccccCCCCCcchHHHHHhhchhhhHHhhhhccccC
Q 015869 47 AGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPR 126 (399)
Q Consensus 47 Age~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~~f~laifdp~~~R~~vr~lIG~~AE~LVylfct~dR 126 (399)
.++....+.++..|+..|..+|..+|....+..|||+|-++-. . .+. .+|++.+|++...+|.-..-.++
T Consensus 10 ~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied-----~----~~~-~~i~~~fg~~V~~lV~~lt~~~~ 79 (153)
T PF13328_consen 10 AGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIED-----T----ETT-EDIEERFGEDVADLVDALTKIKK 79 (153)
T ss_dssp TT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHH-----S----S---HHHHHHHHHHHHHHHHHT---TT
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHh-----c----CCH-HHHHHccChHHHHHHHHHHhccc
Confidence 3555555668999999999999999999999999999988873 1 234 88999999999999988776655
Q ss_pred chh
Q 015869 127 QPL 129 (399)
Q Consensus 127 ~~l 129 (399)
..-
T Consensus 80 ~~~ 82 (153)
T PF13328_consen 80 LSK 82 (153)
T ss_dssp S-H
T ss_pred ccc
Confidence 544
No 9
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.88 E-value=0.046 Score=44.61 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+.|.+.++++++.+|-..+++..+|++|...|++++|...-++++++
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666777777777777777777777777777776666666654
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=94.72 E-value=0.11 Score=53.96 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.++|.+.++++++.||--.+.|..||++|...|++++|+...+++|++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 367 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL 367 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555555555555555555543
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.42 E-value=0.068 Score=53.09 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
...+.|...++++|++||--.+.+.-|+++|...|+|++|....++++++-
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 347789999999999999999999999999999999999999999998763
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.30 E-value=0.12 Score=42.08 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=51.7
Q ss_pred HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..+|..+.+ -......+.|.+++++++..||...+.+..+|++|...|+|++|.....++++.
T Consensus 18 ~~~~~~a~~---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 18 EQIYALAYN---LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHH---HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446666654 112234788999999999999999999999999999999999999988887765
No 13
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.11 Score=51.99 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=48.5
Q ss_pred CCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 331 GSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 331 ~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
....+++....-|+.-+.+||=-+|++++|+++|++.|++++|..+=..+++|.
T Consensus 133 ~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~ 186 (287)
T COG4235 133 PAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA 186 (287)
T ss_pred CCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 344558888999999999999999999999999999999999999998888863
No 14
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.14 E-value=0.084 Score=50.59 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=48.5
Q ss_pred ccccccCC---hhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869 303 ENCTRILD---AKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK 379 (399)
Q Consensus 303 ~~CT~vL~---~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~ 379 (399)
.+-+++|. -.+..-|.-.|..++. -......+.|...+.+++++||=-.+-+..|+.+|...|+|++|...-.+
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~---~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 123 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVL---YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDS 123 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455553 2223334445555544 11233366677777777777777777777777777777777777777777
Q ss_pred HHHH
Q 015869 380 GLML 383 (399)
Q Consensus 380 gL~l 383 (399)
+|++
T Consensus 124 Al~l 127 (296)
T PRK11189 124 VLEL 127 (296)
T ss_pred HHHh
Confidence 7765
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.10 E-value=0.14 Score=44.34 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..+.|...++++++.||=-.+++.-|+++|...|++++|.....+++++
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888899889988888888999989899999988888888764
No 16
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.05 E-value=0.09 Score=47.13 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=61.1
Q ss_pred ccccccccCCh----hhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHH
Q 015869 301 VFENCTRILDA----KEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEA 373 (399)
Q Consensus 301 VF~~CT~vL~~----~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA 373 (399)
.|..|+++=.. .+...+..+|=.+++ --.....+.|...+++++..|| +.-+.++-+|++|...|++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A 89 (235)
T TIGR03302 13 LLAGCSSKKKKEADPVEEWPAEELYEEAKE---ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEA 89 (235)
T ss_pred HHhhccCCcccccCCcccCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHH
Confidence 35678877444 556666677766654 1133447889999999999987 4456789999999999999999
Q ss_pred HHHHHHHHHH
Q 015869 374 EREAGKGLML 383 (399)
Q Consensus 374 ~~~A~~gL~l 383 (399)
....++.++.
T Consensus 90 ~~~~~~~l~~ 99 (235)
T TIGR03302 90 IAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 17
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.91 E-value=0.13 Score=35.65 Aligned_cols=50 Identities=32% Similarity=0.341 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...++|...+.+++..+|--.+.+..+|++|+..|++++|.....++++.
T Consensus 48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 44788999999999999999899999999999999999999888777653
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.73 E-value=0.1 Score=45.12 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869 333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE 386 (399)
Q Consensus 333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~ 386 (399)
+...+.|.+.+++++..||.-.+-+.-||.++...|+|++|...-.+++++--.
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 344788999999999999999999999999999999999999999999886433
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=93.28 E-value=0.27 Score=51.21 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHhhccCCCCC------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHH
Q 015869 311 AKEQIEARDLYWEAVCGNSDGS------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAG 378 (399)
Q Consensus 311 ~~dq~aArdlYWeav~~~~~~~------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~ 378 (399)
..+-..|.+.|-+++.-+.+.+ ....+.|+..+++++++||--.+-+..||++|...|++++|....+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445677888888876222221 1236789999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 015869 379 KGLML 383 (399)
Q Consensus 379 ~gL~l 383 (399)
+++++
T Consensus 397 ~Al~l 401 (553)
T PRK12370 397 ECLKL 401 (553)
T ss_pred HHHhc
Confidence 98876
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.27 E-value=0.19 Score=46.06 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
.+.|.++|+++++++|=-.+.+..||..|...|+|++|...-++.|++.
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3779999999999999999999999999999999999999988888764
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.06 E-value=0.26 Score=41.28 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|...+.++++.+|-..+.+..+|++|...|++++|....++++++
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34788999999999999998889999999999999999999998888876
No 22
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.03 E-value=0.23 Score=45.51 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
.+.+...|+++++.||=-.+-++.|+++|+..|+|++|...-+++++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~ 101 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ 101 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666555555554
No 23
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.77 E-value=0.21 Score=49.73 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|.+++.++|+.||--.+.++.+|++|+..|+|++|...+.++|++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34788999999999999999999999999999999999999999999886
No 24
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.60 E-value=0.29 Score=38.18 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
.+.|.+.+.+++.+|| +..+.++.++.+|...|+|++|...-+.+++
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5556666666666553 3334555666666666666666666555554
No 25
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.07 E-value=0.29 Score=33.87 Aligned_cols=49 Identities=27% Similarity=0.353 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..+.|...++++++.+|-....+..+|++|...|++++|...-..++++
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3778999999999999988888999999999999999999988877764
No 26
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.79 E-value=0.25 Score=52.14 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|+..+++|+++||. -+-|+.|+.+|...|++++|.+..++|++|
T Consensus 434 g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3488899999999999997 478999999999999999999999999875
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.40 E-value=0.33 Score=49.15 Aligned_cols=48 Identities=38% Similarity=0.553 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
..+.|...++++++++|...+-+..||++|+..|+|++|...-+++++
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 84 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALS 84 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999998877765
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.20 E-value=0.3 Score=55.50 Aligned_cols=67 Identities=12% Similarity=-0.071 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 314 QIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 314 q~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
+-...-+|=+++. ...+.+.+.|..++++|++.+|=-.+-++.||++|+..|++++|+..+++++++
T Consensus 41 ~~~~~~~f~~a~~---~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l 107 (987)
T PRK09782 41 HFVIYPRLDKALK---AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR 107 (987)
T ss_pred HHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344455556655 223344778999999999999999999999999999999999999999999875
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=90.75 E-value=0.53 Score=44.80 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..+.|.+.++++++.+|-..+.++.|+++|+..|++++|....+++++.
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4778888899999888888888889999999999999988887777653
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=90.69 E-value=0.57 Score=47.49 Aligned_cols=48 Identities=25% Similarity=0.262 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
..++|...++++++.+|--.+..+.+|++|+..|+|++|....+++++
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356666677777766666666666667777777777666666665554
No 31
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=90.45 E-value=0.51 Score=44.46 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
.+.|++.+++++++||=....+..||++|...|++++|+...+++++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 45566666666666666555556666666666666666665555554
No 32
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.25 E-value=0.97 Score=38.11 Aligned_cols=56 Identities=29% Similarity=0.255 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH-hhCCC
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL-EWGSP 390 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~-~WG~~ 390 (399)
..+.|..+++++|..+|+--+.|..|-++|...|++.+|.+.=++--+.|. +.|..
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 378899999999999999999999999999999999999999888888777 46653
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=89.74 E-value=0.53 Score=44.81 Aligned_cols=46 Identities=28% Similarity=0.444 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
.+.|.+.++++++.||-..+.+..|+.+|...|++++|....+.++
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 5667777777777777766777777777777777777776655544
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=89.55 E-value=0.97 Score=39.19 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHh-------ccCCcHHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYL-------AKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l-------~~gr~~eA~~~A~~gL~ll 384 (399)
...+.|...++++++.+|..++.+..++.+|. ..|++++|..-..+|+..+
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999 7788888877777776653
No 35
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.14 E-value=0.63 Score=29.86 Aligned_cols=29 Identities=41% Similarity=0.492 Sum_probs=24.8
Q ss_pred chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 355 EPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 355 EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
|-+.-||++|...|+|++|.+.-++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34667999999999999999999999876
No 36
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.89 E-value=2 Score=37.40 Aligned_cols=71 Identities=24% Similarity=0.203 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHhhccCCCCC---------------chhHHHHHHHHHHHHhhCCC---cCchHHHHHHHHhccCCcHH
Q 015869 311 AKEQIEARDLYWEAVCGNSDGS---------------KEKLEKAEELLLRCIEKNPF---VGEPHVVLGQIYLAKGEFEE 372 (399)
Q Consensus 311 ~~dq~aArdlYWeav~~~~~~~---------------~~~~d~a~~lL~~~i~~NP~---VgEP~~vLAQ~~l~~gr~~e 372 (399)
.+++..|-.+|-+++....+.+ ....|.|..+|+++++..|= .+.-++.+|-.+.+.||++|
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 3567788888888887322221 12378899999999998554 99999999999999999999
Q ss_pred HHHHHHHHH
Q 015869 373 AEREAGKGL 381 (399)
Q Consensus 373 A~~~A~~gL 381 (399)
|.......|
T Consensus 94 Al~~~l~~l 102 (120)
T PF12688_consen 94 ALEWLLEAL 102 (120)
T ss_pred HHHHHHHHH
Confidence 988776554
No 37
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=88.62 E-value=0.65 Score=49.41 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.++|-+.+.+||+|+|.+-|=+++-|.||-++|++++|.+..+.|-.|
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 678999999999999999999999999999999999999988877543
No 38
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.56 E-value=0.67 Score=32.58 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=25.6
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 356 PHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 356 P~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
-++-||++|...|++++|++.-+++|++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999875
No 39
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.36 E-value=0.44 Score=30.74 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.6
Q ss_pred hHHHHHHHHhccCCcHHHHHHHH
Q 015869 356 PHVVLGQIYLAKGEFEEAEREAG 378 (399)
Q Consensus 356 P~~vLAQ~~l~~gr~~eA~~~A~ 378 (399)
.++.||++|+..|++++|++..+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46889999999999999998765
No 40
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=88.21 E-value=1.2 Score=39.05 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHhhCCC---cCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPF---VGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~---VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..+.|...++++++.+|= .+.-+..||++|...|+|++|.....++++.
T Consensus 50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366677777777765442 2345667777777777777777777776664
No 41
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.68 E-value=1 Score=40.86 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhh---CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 313 EQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEK---NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 313 dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~---NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+..+.+||+++.. .-.....+.|++.|+..-.. +|+.-.=++-|+-.|...|+|++|..++++=++|
T Consensus 6 ~~~~~~~ly~~a~~---~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 6 PDKSPQELYQEAQE---ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CCCCHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45678899999987 33445588999999999888 5566678889999999999999999999987665
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.33 E-value=0.4 Score=37.13 Aligned_cols=56 Identities=34% Similarity=0.436 Sum_probs=40.4
Q ss_pred HHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869 320 LYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK 379 (399)
Q Consensus 320 lYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~ 379 (399)
+|+-+-| =-.....++|.+++++ ...||=-.+-+.++||+|+..|+|+||...=++
T Consensus 28 ~~~la~~---~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 28 LYNLAQC---YFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHH---HHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHH---HHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444666 2233447889999988 777886677888889999999999999876544
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=86.99 E-value=1.2 Score=46.72 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL 385 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~ 385 (399)
...+.|+.+++++++++|-...-+.-|||+|+..|++++|...-++++++.-
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 3477899999999999997777788899999999999999999999887743
No 44
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.76 E-value=1.3 Score=40.44 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 314 QIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 314 q~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
|.-+.++|..+.. .-...+.+.|.+++.+.+...| ++.+=.+-||..|...|+|++|....++=++.
T Consensus 2 ~~~~~~lY~~a~~---~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 2 EDTAEALYQKALE---ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp ---HHHHHHHHHH---HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567899999987 3344558899999999999855 78888999999999999999999988876553
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=86.70 E-value=1.4 Score=42.24 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|.+.+.+++++||=-..-+.-++.+|...|++++|....++++++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34788999999999999998889999999999999999999888888775
No 46
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.59 E-value=1.1 Score=44.51 Aligned_cols=49 Identities=27% Similarity=0.294 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
...|+..++++.+++|=-+|++..|+-+|.+.||+++|+..=-.+++|.
T Consensus 116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred hHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 5569999999999999999999999999999999999999999999875
No 47
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=86.59 E-value=1.3 Score=46.28 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+.|...++++++.||-..+.++-+|++|+..|++++|...-+++|++
T Consensus 347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 347 HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 556666666666666666666666666666666666666666666554
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=86.17 E-value=1.5 Score=49.88 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=51.1
Q ss_pred HHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 320 LYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 320 lYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
.||..+. . .....+.|.+.|++.++.||-..+-++.||++|+..|+++||...-++.++
T Consensus 151 ~y~~~~~--~--~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~ 209 (1157)
T PRK11447 151 EYWRLVA--K--LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAK 209 (1157)
T ss_pred HHHHHHh--h--CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 6999987 2 234478899999999999999999999999999999999999998777643
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=86.13 E-value=2.2 Score=48.60 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|++.++++++.+|--.+.++.||++|...|++++|++.-+++|++
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34788999999999999998889999999999999999999999888865
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=85.67 E-value=3 Score=32.47 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=49.8
Q ss_pred HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+...|+-+.+ -......+.|..++++++..+| +..+=+.-++++|...|++++|...-.+.++.
T Consensus 38 ~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 38 APNAHYWLGEA---YYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34455666665 3344458889999999999854 45666888999999999999999988877765
No 51
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.11 E-value=1.8 Score=46.02 Aligned_cols=50 Identities=16% Similarity=0.003 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHhhCCCcCch---HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEP---HVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP---~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|...++++|+.||--.|- |.-||-+|...|+++||...-++++++
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44889999999999999998865 999999999999999999999999987
No 52
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=84.05 E-value=1.3 Score=45.85 Aligned_cols=42 Identities=29% Similarity=0.329 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREA 377 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A 377 (399)
.+.|.+++++|++..|--.+++.-||++|...|+|++|....
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 578999999999999999999999999999999999997543
No 53
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.90 E-value=1.5 Score=28.93 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=23.2
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869 358 VVLGQIYLAKGEFEEAEREAGKGLMLLL 385 (399)
Q Consensus 358 ~vLAQ~~l~~gr~~eA~~~A~~gL~ll~ 385 (399)
.-||.+|...|+|++|+.-.++++....
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3589999999999999999999988654
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=83.38 E-value=1.8 Score=49.38 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=54.7
Q ss_pred CChhhHHHHHHHHHHhhccCCCC---------Cc---hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869 309 LDAKEQIEARDLYWEAVCGNSDG---------SK---EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAERE 376 (399)
Q Consensus 309 L~~~dq~aArdlYWeav~~~~~~---------~~---~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~ 376 (399)
+..++-.+|...|=+++..+.+. .. ...+.|...+++++++||- .+.+.-||++|...|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455566666665555421111 01 3377899999999999997 88999999999999999999999
Q ss_pred HHHHHHH
Q 015869 377 AGKGLML 383 (399)
Q Consensus 377 A~~gL~l 383 (399)
.++++.+
T Consensus 632 l~~AL~l 638 (987)
T PRK09782 632 LRAALEL 638 (987)
T ss_pred HHHHHHh
Confidence 9888875
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=83.22 E-value=2.9 Score=44.99 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+.|.+.++++++.||=-.+.+..||.+|...|++++|....++++++
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777777777777777777777666666654
No 56
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.12 E-value=2.5 Score=31.86 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHhhC-------CCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKN-------PFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~N-------P~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
..+.|.+.+++|+... |.++.=..-||++|...|++++|+..-++++++.
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 20 RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4777888888888662 3344444458899999999999999999999875
No 57
>PRK11906 transcriptional regulator; Provisional
Probab=83.01 E-value=3.4 Score=44.02 Aligned_cols=74 Identities=12% Similarity=-0.038 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHHhhccCCCCC------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHH
Q 015869 310 DAKEQIEARDLYWEAVCGNSDGS------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREA 377 (399)
Q Consensus 310 ~~~dq~aArdlYWeav~~~~~~~------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A 377 (399)
.+.+..+|+.+=+.||--+.+.+ ..+.+.+..++++|+++||=-.-=+..+|.+++-+|+.++|.++.
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46788889999999986222221 123678999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 015869 378 GKGLML 383 (399)
Q Consensus 378 ~~gL~l 383 (399)
++||+|
T Consensus 396 ~~alrL 401 (458)
T PRK11906 396 DKSLQL 401 (458)
T ss_pred HHHhcc
Confidence 999875
No 58
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=82.74 E-value=4.4 Score=38.16 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=64.8
Q ss_pred chhHHHHHHHhCCCccccCCCChHhhHHHHHHHHHhcCCchHHHHhccchhc---ccCcc-cc-ccCCCCCc---chHHH
Q 015869 35 LPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSA---YSNSY-VN-LAIFDPNT---GRDVV 106 (399)
Q Consensus 35 Lp~ll~~Lr~~GAge~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~AGLfHSa---YGt~~-f~-laifdp~~---~R~~v 106 (399)
+..+..++...|+....=-.=|-+.|.+.|.-+-..-|+++++..|+|+|=+ ....+ -+ ...-+.+. ..+.|
T Consensus 4 ~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~L 83 (179)
T TIGR03276 4 LDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYL 83 (179)
T ss_pred HHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHH
Confidence 4567888999998864322228899999999999999999999999999987 21100 00 01112222 36889
Q ss_pred HHhhchhhhHHhhhhccccCchh
Q 015869 107 RGHVGDAAEKLIHLFCIVPRQPL 129 (399)
Q Consensus 107 r~lIG~~AE~LVylfct~dR~~l 129 (399)
+..+|+..=.+|-+ ++..+..|
T Consensus 84 r~~F~~~V~~lV~~-Hv~aKryl 105 (179)
T TIGR03276 84 RELFSPSVTEPIRL-HVQAKRYL 105 (179)
T ss_pred HHHcCHHHHHHHHH-HHHHHHHH
Confidence 99999999999863 33333333
No 59
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.32 E-value=2.4 Score=27.40 Aligned_cols=29 Identities=41% Similarity=0.492 Sum_probs=25.9
Q ss_pred chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 355 EPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 355 EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
+-+..+|++|...|++++|...-++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45788999999999999999999998875
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=82.16 E-value=2.4 Score=45.54 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
..+.|...++++++.+|-..+-+..|+++|...|+|++|....++.++
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 367888888888888888888888888888888888888888776664
No 61
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=81.65 E-value=4.2 Score=35.27 Aligned_cols=51 Identities=14% Similarity=0.049 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHHHHhhCC--C-cCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 333 KEKLEKAEELLLRCIEKNP--F-VGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 333 ~~~~d~a~~lL~~~i~~NP--~-VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
....+.|...+++++..+| . ...=+.-||.+|...|++++|....++++++
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3448899999999998854 2 2334678999999999999999999999976
No 62
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=81.07 E-value=2.9 Score=45.62 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..+.|...|+++++++|=-.+ +..||++|..+|++++|....++++++
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 367788889999999998888 889999999999999998888887764
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=80.93 E-value=2.3 Score=46.92 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.|.|+++|+++++..|---.=++.+|+++...+++|||..++++.|+.
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 678999999999999999999999999999999999999999988763
No 64
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.56 E-value=2.2 Score=24.38 Aligned_cols=29 Identities=38% Similarity=0.497 Sum_probs=24.9
Q ss_pred chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 355 EPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 355 EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
+.+..+|.+|...|++++|......++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34678999999999999999998888764
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=80.50 E-value=1.9 Score=36.77 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKG 380 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~g 380 (399)
...|.|..+|.+ +..+||-+.=+.+++.||+..|++++|...=+.|
T Consensus 99 ~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 99 GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 447788888855 7788888888889999999999999988765554
No 66
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=80.13 E-value=3.3 Score=41.49 Aligned_cols=47 Identities=26% Similarity=0.288 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
.+++.+.+++..+++|=--+.++.+|++|+..|+|++|+++-+++++
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555443
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=79.68 E-value=2.1 Score=45.79 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=39.9
Q ss_pred HHHHHHHHH-hhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869 339 AEELLLRCI-EKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE 386 (399)
Q Consensus 339 a~~lL~~~i-~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~ 386 (399)
|-..++++. +.||-|+.++.=||.+|++.|+|+||+...++|+++.-.
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 334444444 349999999999999999999999999999999998754
No 68
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=79.34 E-value=6.7 Score=43.55 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=64.2
Q ss_pred HHHHHHhcccchhhhHhhcCCCchhHHHHHHHhCCCccccCCC-ChHhhHHHHHHHHHhcCCchHHHHhccchhcccCcc
Q 015869 13 LETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHG-SFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSY 91 (399)
Q Consensus 13 ~~~l~~~arpfLr~e~~~~D~~Lp~ll~~Lr~~GAge~~Hk~G-Tf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~~ 91 (399)
++.++...+.++..+-.. .+-..+.+-...-.|+.- +.| .+..|.+.|+.||+.+|.......|||+|-+.--
T Consensus 4 ~~~l~~~~~~~~~~~~~~---~l~~A~~~A~~aH~gQ~r-ksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvED-- 77 (702)
T PRK11092 4 FESLNQLIQTYLPEDQIK---RLRQAYLVARDAHEGQTR-SSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIED-- 77 (702)
T ss_pred HHHHHHHHHhhCCHHHHH---HHHHHHHHHHHhccCCcC-CCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhh--
Confidence 345565555555432110 122334444444444444 555 8899999999999999999999999999987652
Q ss_pred ccccCCCCCcchHHHHHhhchhhhHHhhhh
Q 015869 92 VNLAIFDPNTGRDVVRGHVGDAAEKLIHLF 121 (399)
Q Consensus 92 f~laifdp~~~R~~vr~lIG~~AE~LVylf 121 (399)
-....++|++..|++.-.||---
T Consensus 78 -------t~~t~e~i~~~FG~~Va~lV~gv 100 (702)
T PRK11092 78 -------TPATYQDMEQLFGKSVAELVEGV 100 (702)
T ss_pred -------CCCCHHHHHHHHCHHHHHHHHHH
Confidence 12356788888888877776543
No 69
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=78.86 E-value=4.3 Score=35.55 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHH
Q 015869 333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREA 377 (399)
Q Consensus 333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A 377 (399)
....+.|.+.+++++..+|-...++..++.+|...|++..|....
T Consensus 85 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 85 NGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCH
Confidence 344789999999999999999999999999999988754444333
No 70
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=78.85 E-value=3.6 Score=42.63 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 337 EKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 337 d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
.+|..+|.+++..||--++=-.+.|+.++.+++|+.|..-|.+++.+.
T Consensus 217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls 264 (395)
T PF09295_consen 217 VEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS 264 (395)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 468999999999999998888889999999999999999999998763
No 71
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=77.27 E-value=5.8 Score=43.67 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=50.9
Q ss_pred HhCCCccccCCC-ChHhhHHHHHHHHHhcCCchHHHHhccchhcccCccccccCCCCCcchHHHHHhhchhhhHHhhhh
Q 015869 44 SVGAGECWHKHG-SFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLF 121 (399)
Q Consensus 44 ~~GAge~~Hk~G-Tf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~~f~laifdp~~~R~~vr~lIG~~AE~LVylf 121 (399)
..-.|+.. +.| .+..|+++|+.+|..+|...+...|||+|-+.-- -....++|++..|++.-.||---
T Consensus 7 ~aH~gQ~r-ksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvED---------t~~t~e~i~~~FG~~Va~lV~~v 75 (683)
T TIGR00691 7 DLHEGQKR-KSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIED---------TPVTEEEIEEEFGEEVAELVDGV 75 (683)
T ss_pred HhcccCcC-CCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhc---------CCCCHHHHHHHHCHHHHHHHHHH
Confidence 33344543 455 8899999999999999999999999999987653 12355778888887776666543
No 72
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=76.39 E-value=6.3 Score=36.74 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEE 372 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~e 372 (399)
.++|++.+++++++||---+.+.-|+.++...|++++
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence 3444444444444444444444444444444444444
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=76.35 E-value=4.7 Score=44.05 Aligned_cols=50 Identities=22% Similarity=0.122 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|+++|++++++.|--.+-++-||++|...|++++|+..-++++.+
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 34788999999999999999999999999999999999999998888875
No 74
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.19 E-value=5.7 Score=38.64 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
...+.|...+++.|.++| ++.+-+.-||++|++.|+|++|.......++.
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 347889999999999976 55789999999999999999999987776643
No 75
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=76.05 E-value=10 Score=32.33 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhCCC---cCchHHHHHHHHhccCCcHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPF---VGEPHVVLGQIYLAKGEFEEAERE 376 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~---VgEP~~vLAQ~~l~~gr~~eA~~~ 376 (399)
.+++++.+...+..+|= ..-..+.||+++...|+|++|...
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~ 70 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAA 70 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444444444444332 234444455555555555554443
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=75.81 E-value=16 Score=32.77 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhhCCCcCch-----------------HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEP-----------------HVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP-----------------~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..+.|.+.+.+++..||=-... +.-+|.+|+..|++++|....+++++.
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3677888899999888865433 345789999999999999988887765
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=75.48 E-value=3.3 Score=32.01 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHH--HHHHhccCCcHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVL--GQIYLAKGEFEEAEREAGK 379 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vL--AQ~~l~~gr~~eA~~~A~~ 379 (399)
.+.|..+.+++++.+|---++-.++ |++|++.|+|++|..-..+
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6789999999999998521665555 9999999999999776544
No 78
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=75.47 E-value=8.5 Score=40.98 Aligned_cols=50 Identities=22% Similarity=0.161 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHhhCCCcCch--HHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEP--HVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP--~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
.+.++.+.+++++..++-...| |.++|-+++..|++++|.++.++|+.|-
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3567777778877765444455 9999999999999999999999999874
No 79
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=73.85 E-value=10 Score=42.67 Aligned_cols=91 Identities=22% Similarity=0.176 Sum_probs=63.3
Q ss_pred HHHHHHhcccchhhhHhhcCCCchhHHHHHHHhCCCccccCCC-ChHhhHHHHHHHHHhcCCchHHHHhccchhcccCcc
Q 015869 13 LETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHG-SFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSY 91 (399)
Q Consensus 13 ~~~l~~~arpfLr~e~~~~D~~Lp~ll~~Lr~~GAge~~Hk~G-Tf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~~ 91 (399)
.+.++.....++..+.+. +-....+......| ++.| .+..|-+.|+.||+.||...+...|||+|-+.--
T Consensus 17 ~~~l~~~~~~~~~~~~~~----i~~A~~~a~~~H~g---r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~ved-- 87 (743)
T PRK10872 17 PDKWIASLGITSQQSCER----LAETWAYCLQQTQG---HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADA-- 87 (743)
T ss_pred HHHHHHHHHhhhHHHHHH----HHHHHHHHHHhccC---CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhc--
Confidence 455666655555222221 22333444344344 6777 8889999999999999999999999999987642
Q ss_pred ccccCCCCCcchHHHHHhhchhhhHHhh
Q 015869 92 VNLAIFDPNTGRDVVRGHVGDAAEKLIH 119 (399)
Q Consensus 92 f~laifdp~~~R~~vr~lIG~~AE~LVy 119 (399)
.....++|++..|++.-.||-
T Consensus 88 -------t~~t~e~i~~~FG~~Va~lVd 108 (743)
T PRK10872 88 -------NVVSEDVLRESVGKSIVNLIH 108 (743)
T ss_pred -------CCCCHHHHHHHHCHHHHHHHH
Confidence 124668899999998887775
No 80
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.80 E-value=6 Score=25.63 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 357 HVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 357 ~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
+.-+|.+|...|+|++|...=+++|++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 81
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=72.60 E-value=6.9 Score=39.23 Aligned_cols=50 Identities=22% Similarity=0.162 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL 385 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~ 385 (399)
.+++|.+-++++++.+|=. +.++.||++|...|+.++|...-.+||.+..
T Consensus 343 ~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 343 EWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 3899999999999999984 6679999999999999999999999998753
No 82
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=72.00 E-value=3.8 Score=30.89 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=29.6
Q ss_pred CchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869 354 GEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS 389 (399)
Q Consensus 354 gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~ 389 (399)
+.=..-||.+|...|+|++|..--+++|++.-.-|.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 40 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD 40 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC
Confidence 334567999999999999999999999999666665
No 83
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=70.84 E-value=4.2 Score=37.90 Aligned_cols=50 Identities=26% Similarity=0.208 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
..++|.+.++++...||---.-++.+|+++...|++++|..--.++++.+
T Consensus 229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36778888889888888877778888999999999999888777777665
No 84
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=70.58 E-value=4 Score=30.16 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=22.2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHH
Q 015869 360 LGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 360 LAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
|+++|++.++|++|.+..++.+++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~ 24 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL 24 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998877
No 85
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=70.17 E-value=6.3 Score=26.76 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=22.3
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 358 VVLGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 358 ~vLAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
.-||++|...|+|++|..-=+++|.+-
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468999999999999999988877553
No 86
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=68.53 E-value=14 Score=41.42 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCchHHHHHHhcccchhhhHhhcCCCchhHHHHHHHhCCCccccCCC-ChHhhHHHHHHHHHhcCCchHHHHhccchhcc
Q 015869 9 NNDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHG-SFLEHLVDIYRILKIWKAPDCVCLCGLFHSAY 87 (399)
Q Consensus 9 ~~~~~~~l~~~arpfLr~e~~~~D~~Lp~ll~~Lr~~GAge~~Hk~G-Tf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaY 87 (399)
.+..+..++++.+..+-.+-.. +-.-+.+-+..=.+ ..++.| .+..|.+.|..||..|+-......|||.|=+-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----l~kA~~~A~q~H~~-q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~v 79 (701)
T COG0317 5 GCVELEELLDSLATYLPPVDIE----LKKAWYYARQAHGG-QTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTI 79 (701)
T ss_pred ccccHHHHHHHHHhcCChHHHH----HHHHHHHHHHHhHh-hcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchH
Confidence 3445666666666665411111 33222222222222 556777 78999999999999999999999999999653
Q ss_pred cCccccccCCCCCcchHHHHHhhchhhhHHhh
Q 015869 88 SNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIH 119 (399)
Q Consensus 88 Gt~~f~laifdp~~~R~~vr~lIG~~AE~LVy 119 (399)
= |-....++|++..|++.=+||.
T Consensus 80 E---------Dt~~t~e~i~~~FG~eVa~LV~ 102 (701)
T COG0317 80 E---------DTPVTEELIEEIFGKEVAKLVE 102 (701)
T ss_pred h---------cCCCCHHHHHHHHCHHHHHHHh
Confidence 2 2235778888888887777764
No 87
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=65.60 E-value=13 Score=37.28 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHHHHHHHH--HHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869 336 LEKAEELLL--RCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG 388 (399)
Q Consensus 336 ~d~a~~lL~--~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG 388 (399)
+++|.+-|+ ++++.+|-. |.+.-||.+|...|+.++|.+.-.+||.+++.=+
T Consensus 351 ~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ 404 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 777888888 677788843 5577888888888888888888888888877543
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=65.59 E-value=7.7 Score=36.65 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+.+.+.+......+|-...-...+|.+|...|++++|+..+++++++
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 96 RDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred chhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445666666666678877777788999999999999999999999875
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=62.25 E-value=18 Score=36.29 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
.+.|.+.++...+.+|=-......++++|+..|++++|......-+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556666777777766666666677777777777766665544433
No 90
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=61.53 E-value=7.6 Score=27.18 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQI 363 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~ 363 (399)
..+.|+++++++|+.+|=--+-+..|||+
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 48899999999999999877777777763
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=61.31 E-value=11 Score=42.39 Aligned_cols=49 Identities=12% Similarity=-0.005 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
..++|.++++++++++|=-.+....||++|...|++++|...+++.+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 3778999999999999988888888899999999999999999887654
No 92
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.05 E-value=12 Score=30.97 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 340 EELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 340 ~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
.+-|++.|+.||=--+=+.-||..|+..|+|++|..+-.+-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456889999999988999999999999999999987765444
No 93
>PLN03077 Protein ECB2; Provisional
Probab=59.97 E-value=13 Score=40.60 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG 388 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG 388 (399)
.+.++...++.++.+|-....+++|+.+|..+|++++|.+- .+.|-+-|
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v----r~~M~~~g 721 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV----RKTMRENG 721 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH----HHHHHHcC
Confidence 55677777888899999999999999999999999987654 45555543
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=59.61 E-value=17 Score=41.18 Aligned_cols=45 Identities=13% Similarity=-0.096 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKG 380 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~g 380 (399)
.+.|...|++++++||--.-...-|+|+|...|++++|+...+++
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 345555566666555553211115555555555555555555544
No 95
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=59.47 E-value=13 Score=39.70 Aligned_cols=49 Identities=24% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG 388 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG 388 (399)
.+.|+.+.++.++.+|-.-..++.|+.+|..+|++++|.+-- +.|.+.|
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~----~~m~~~g 558 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV----ETLKRKG 558 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH----HHHHHcC
Confidence 678888899999999988889999999999999999987654 4555555
No 96
>PRK11906 transcriptional regulator; Provisional
Probab=57.93 E-value=16 Score=39.21 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=38.6
Q ss_pred HHHHHhhccCCCCCchhHHHHHHHHHHHH---hhCCCcCchHHHHHHHHhcc
Q 015869 319 DLYWEAVCGNSDGSKEKLEKAEELLLRCI---EKNPFVGEPHVVLGQIYLAK 367 (399)
Q Consensus 319 dlYWeav~~~~~~~~~~~d~a~~lL~~~i---~~NP~VgEP~~vLAQ~~l~~ 367 (399)
|+|=.+-.--...+.++.+.|..++.+|+ +.+|--++|+-.||-+|...
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~ 308 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL 308 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH
Confidence 55655543223446677999999999999 99999999999999888764
No 97
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.34 E-value=24 Score=36.04 Aligned_cols=72 Identities=32% Similarity=0.320 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHHhhccCCCCC--------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHH
Q 015869 310 DAKEQIEARDLYWEAVCGNSDGS--------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAER 375 (399)
Q Consensus 310 ~~~dq~aArdlYWeav~~~~~~~--------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~ 375 (399)
-..+=.+|.+.|=+||. -+.. ....+.|.+=.++||..||.--.-+.=|.-+|+..|+|++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34556788889988887 4421 1224567888899999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 015869 376 EAGKGLML 383 (399)
Q Consensus 376 ~A~~gL~l 383 (399)
.=.+||.+
T Consensus 171 aykKaLel 178 (304)
T KOG0553|consen 171 AYKKALEL 178 (304)
T ss_pred HHHhhhcc
Confidence 87777765
No 98
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=55.76 E-value=16 Score=26.74 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 357 HVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 357 ~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
+.-+|++|+..|+|++|...-.+++++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 567899999999999999999999986
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=55.72 E-value=24 Score=38.16 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHH------HHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHV------VLGQIYLAKGEFEEAEREAGKGLMLLLEWGS 389 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~------vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~ 389 (399)
..+.|...++++++...-.|.++. .||.+|+..|++++|+...++++++.-+.|.
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 367788899999987666677654 5799999999999999999999998877663
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=55.49 E-value=30 Score=30.14 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=46.3
Q ss_pred HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCc----hHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGE----PHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgE----P~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
+-+|.-+-+ -......+.|+.+-+++++.- ..|+ -.+.||..|-+-|++++|..--++++.
T Consensus 2 ~~~~~~A~a---~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 2 RALYELAWA---HDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred chHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446777755 224445788999999999953 3343 457899999999999999998887765
No 101
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=55.11 E-value=18 Score=36.15 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=61.8
Q ss_pred cccccccccccccCCh---hhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHH
Q 015869 296 LPVPPVFENCTRILDA---KEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEE 372 (399)
Q Consensus 296 L~iPPVF~~CT~vL~~---~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~e 372 (399)
|+++=.+..|..-=.+ .|...|.+.+=+-=- .--.-.+...|+.-|+.++++-|=+=--|.|+|-+|-..|..+-
T Consensus 10 lv~~La~~~cvt~~~~~~~~~~~~aa~arlqLal--~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~ 87 (250)
T COG3063 10 LVFSLALGACVTDPAPSRQTDRNEAAKARLQLAL--GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDL 87 (250)
T ss_pred HHHHHhhhcccCCCCccccccHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhh
Confidence 4444445555444444 556666665544321 00011236679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015869 373 AEREAGKGLML 383 (399)
Q Consensus 373 A~~~A~~gL~l 383 (399)
|.+.=++||.+
T Consensus 88 A~e~YrkAlsl 98 (250)
T COG3063 88 ADESYRKALSL 98 (250)
T ss_pred HHHHHHHHHhc
Confidence 99999999876
No 102
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.59 E-value=42 Score=34.22 Aligned_cols=63 Identities=22% Similarity=0.408 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869 313 EQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL 385 (399)
Q Consensus 313 dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~ 385 (399)
+-..+...|+.+|. +..+ +-|...+.+|||-=+=.+-||.||..+|+++.|..--|+||-.+-
T Consensus 9 ~Y~~~q~~F~~~v~--~~Dp--------~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e 71 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQ--SHDP--------NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE 71 (360)
T ss_pred HHHHHHHHHHHHHH--ccCH--------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33556777888887 3322 234566799999999999999999999999999999999886553
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.87 E-value=18 Score=36.14 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAERE 376 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~ 376 (399)
...+.|++.|+++++++|=-+.+.+-+||.+..+|+|.+|.--
T Consensus 153 gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 153 GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 3478899999999999999999999999999999999998753
No 104
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.19 E-value=22 Score=39.00 Aligned_cols=169 Identities=24% Similarity=0.272 Sum_probs=103.6
Q ss_pred ccccccHHHHH--HHHHHHhhhhhhhhcCcccccc----C--CC-----CCcceec-------CCCcc---cccCCCCCC
Q 015869 191 EDVGVSRRVVA--TFVMLTIADFSDQLFGFQDFLF----N--NS-----DGKLEFA-------GNSFS---ALWPGDGKP 247 (399)
Q Consensus 191 E~v~Lsrr~va--~F~~mTmAD~~dQ~f~wQD~lf----~--n~-----~g~l~~~-------g~~w~---sLWPG~~kP 247 (399)
+.|.|.++... ++.-.+++|-=+-..+|+|-== | |. .|+++|- +.++. || .|
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-----~p 425 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-----DP 425 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-----Ch
Confidence 45667666555 5556678888887888887210 1 22 3455443 23332 44 34
Q ss_pred chHHHHHHHHHHHHHhh--hHHHHHHHHHhhccccccCccccCCCCCccccccccccccccccCChhhH-HHHHHHHHHh
Q 015869 248 GLWMNSLSRMGAIYSLI--AREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKEQ-IEARDLYWEA 324 (399)
Q Consensus 248 glw~s~~Srmg~~~~li--~~eee~~~~~~~~~~~~~~~~~~~~~~~~ieL~iPPVF~~CT~vL~~~dq-~aArdlYWea 324 (399)
-.-.+.|--.-++|+.= ...+..|....++-+ -.|-|.+---++|+-..| --|-..|=-+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-----------------~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-----------------NCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------CCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 55556676667777743 222233333222211 123344444455554433 2455566555
Q ss_pred hccCCC---------------------CCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 325 VCGNSD---------------------GSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 325 v~~~~~---------------------~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
|- .+ +.+.+.+.|+.||++||+..|=----..-|||+-+..|..+||.+-=|+++.|
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 53 22 13466889999999999999988888889999999999999998877776655
No 105
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=51.04 E-value=69 Score=32.23 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=56.3
Q ss_pred cccccc-ccccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHH
Q 015869 297 PVPPVF-ENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAER 375 (399)
Q Consensus 297 ~iPPVF-~~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~ 375 (399)
.+||.= ++.|++-.+.-..- .-|=+.+. +.. +...-+-+++++..|||==+-|...+|...+.| |+++..
T Consensus 83 ~lP~~~~~g~T~L~~p~ad~~--~~~~~~~~--~~~----~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~ 153 (301)
T TIGR03362 83 ALPMSNADGRTRLAPPPADRV--ADYQELLA--QAD----WAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQ 153 (301)
T ss_pred cCCCCCCCCCccCCCCCHHHH--HHHHHHHh--CCC----HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHH
Confidence 356655 78888877764332 33444433 221 222334444555569999999999999999999 899999
Q ss_pred HHHHHHHHHHh
Q 015869 376 EAGKGLMLLLE 386 (399)
Q Consensus 376 ~A~~gL~ll~~ 386 (399)
.-...|+.|++
T Consensus 154 aI~~el~~fL~ 164 (301)
T TIGR03362 154 AIRDELAAFLE 164 (301)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 106
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.33 E-value=34 Score=34.61 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=44.0
Q ss_pred HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHH
Q 015869 317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAG 378 (399)
Q Consensus 317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~ 378 (399)
|+-||-++ ++. .--+++.+|++++.+-|.-=.....||.-|+..|+|.+|...=+
T Consensus 197 aeaL~~~a-----~~~--~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq 251 (287)
T COG4235 197 AEALYYQA-----GQQ--MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQ 251 (287)
T ss_pred HHHHHHhc-----CCc--ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 56666655 222 13469999999999999999999999999999999999876544
No 107
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=48.88 E-value=34 Score=27.74 Aligned_cols=37 Identities=38% Similarity=0.451 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW 387 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W 387 (399)
+++|.+++.++|+. -++|+|++|-.-=..||+.|+.|
T Consensus 3 l~~A~~l~~~Ave~---------------d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 3 LEQAAELIRLALEK---------------EEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHHhhHHHHHHHHHHHHHHHHHH
Confidence 56788888888876 56799999999999999999875
No 108
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=48.19 E-value=14 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.6
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 359 VLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 359 vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
-+|+.|+..|+|++|++.-++.|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~ 26 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ 26 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4789999999999999998887753
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.94 E-value=37 Score=33.16 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhh---CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 311 AKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEK---NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 311 ~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~---NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
|...-+....||-+-+ --.....+.|...++..+.+ +|++.+=.+-++.+|...|++++|.+.-++.++
T Consensus 174 P~s~~a~~A~y~LG~~---y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 174 PDSTYQPNANYWLGQL---NYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCcchHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444556678999876 22344578899999999965 777999988999999999999999987665554
No 110
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.90 E-value=43 Score=27.01 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW 387 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W 387 (399)
++++|..|+.+|++. -++|+|++|..-=..||+.|+.|
T Consensus 2 ~l~~Ai~lv~~Av~~---------------D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 2 SLEKAIALVVQAVKK---------------DQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred cHHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHHHHHH
Confidence 367889999999876 68999999999999999998765
No 111
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=45.40 E-value=52 Score=26.07 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW 387 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W 387 (399)
++.|..++.++++. -+.|+|++|..--..|++.|+.+
T Consensus 3 ~~~A~~l~~~Av~~---------------D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 3 LQKAIELVKKAIEE---------------DNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 46678888888664 68899999999999999999876
No 112
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=45.38 E-value=29 Score=35.94 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=34.9
Q ss_pred CCccccCCCChHhhHHHHHHHHHhcCCchHHHHhccchhc
Q 015869 47 AGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSA 86 (399)
Q Consensus 47 Age~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~AGLfHSa 86 (399)
-...+|..++...|...|.+.+..-..+..++.|.|||-.
T Consensus 218 Q~~~~H~e~dv~~Htl~~l~~~~~l~~~l~lr~AaLlHDl 257 (409)
T PRK10885 218 QPAKWHPEIDTGIHTLMVLDQAAKLSPSLDVRFAALCHDL 257 (409)
T ss_pred CCcCCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHhccc
Confidence 3467888899999999999999888888899999999954
No 113
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.83 E-value=55 Score=30.54 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=45.5
Q ss_pred HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHH
Q 015869 318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAG 378 (399)
Q Consensus 318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~ 378 (399)
.++.|-++. .+ +.+-++.||...=.+-|=..|..++-+++|...|+|+||.+-=+
T Consensus 14 ie~~~~al~--~~----~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr 68 (160)
T PF09613_consen 14 IEVLSVALR--LG----DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLR 68 (160)
T ss_pred HHHHHHHHc--cC----ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456677766 22 46779999999888999999999999999999999999987533
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=44.37 E-value=20 Score=40.11 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHhhccCCCCCchh-HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 310 DAKEQIEARDLYWEAVCGNSDGSKEK-LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 310 ~~~dq~aArdlYWeav~~~~~~~~~~-~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
+.+.|--+..+-|...+-...-...+ .++|++.|..||.|-|=+=|=.+|=|.|+.++|..++|.+=.++|-.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 33445556777788776334444444 88999999999999999999999999999999999999887776643
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=43.82 E-value=25 Score=38.02 Aligned_cols=46 Identities=26% Similarity=0.217 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
...|.+.+++++.+-|.-.==++.+||.|+..|++.||.+.-..++
T Consensus 356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 3456666666666666654445566666666666666555544443
No 116
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=43.57 E-value=25 Score=22.05 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHH
Q 015869 358 VVLGQIYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 358 ~vLAQ~~l~~gr~~eA~~~A~~gL~ 382 (399)
+-+|.+|...|++++|...-++-++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4578999999999999988776554
No 117
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=42.08 E-value=49 Score=23.89 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=27.7
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869 356 PHVVLGQIYLAKGEFEEAEREAGKGLMLLLE 386 (399)
Q Consensus 356 P~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~ 386 (399)
=+..|+.|-+-.++|+.|...-.++|++..+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999988653
No 118
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=41.65 E-value=67 Score=24.97 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW 387 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W 387 (399)
.+.|.+++.+|++. -+.|+|++|......|++.|..+
T Consensus 5 ~~~A~~li~~Av~~---------------d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 5 LSKAKELISKALKA---------------DEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 56777787777654 56899999999999999999875
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.99 E-value=64 Score=35.99 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
.+.|....++++.++|--.+=+..+|.++-..|+|+||.+.=++.+
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555544444443
No 120
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=39.12 E-value=18 Score=27.97 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=24.5
Q ss_pred ChHhhHHHHHHHHHhcCC--------chHHHHhccchhc
Q 015869 56 SFLEHLVDIYRILKIWKA--------PDCVCLCGLFHSA 86 (399)
Q Consensus 56 Tf~~HL~~V~~iL~~Wga--------p~~V~~AGLfHSa 86 (399)
++..|..+|..+...... ++.+..|||+|=+
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDi 40 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDI 40 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhc
Confidence 567899988888766544 6789999999964
No 121
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=39.04 E-value=42 Score=36.26 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL 385 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~ 385 (399)
..+++|+.+-++|++. -|-|......+|++|++.++|.||..-=+++|+..-
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3489999999999998 899999999999999999999999999999998764
No 122
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=38.35 E-value=63 Score=34.05 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=51.9
Q ss_pred HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
.=--+|=|--+ +...+...|+|.++|.+|.+-||=-----++|++|++..|+|+.|-++=+..+
T Consensus 178 eIAqfyCELAq--~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 178 EIAQFYCELAQ--QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 33457777655 34455568999999999999999999999999999999999999887766544
No 123
>PRK04841 transcriptional regulator MalT; Provisional
Probab=38.28 E-value=47 Score=36.04 Aligned_cols=54 Identities=26% Similarity=0.279 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhCCCcC------chHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869 336 LEKAEELLLRCIEKNPFVG------EPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS 389 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~Vg------EP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~ 389 (399)
.++|..+|+++++...=.| +=++.+|..|...|++++|.+.-+++|++....|.
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 5678888888887532222 23678899999999999999999999998877765
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=37.60 E-value=1e+02 Score=28.70 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=42.1
Q ss_pred CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869 332 SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 332 ~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
-+..+.+|...-..|+.++|=--+|+.=+|++||..|+.++|++.=..++
T Consensus 81 ~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44458889999999999999999999999999999999988776544443
No 125
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=37.41 E-value=70 Score=31.97 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=60.9
Q ss_pred cccccCCh--hhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHH
Q 015869 304 NCTRILDA--KEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAG 378 (399)
Q Consensus 304 ~CT~vL~~--~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~ 378 (399)
.|+.-.+. ..+.-+-.||=+... +-....++.|..-++.....+| |.=.-.|.|++.|-..|.|++|..-++
T Consensus 19 ~cs~~~~~~~~~~~p~~~LY~~g~~---~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~d 95 (254)
T COG4105 19 GCSGDKDKNGVYNLPASELYNEGLT---ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYID 95 (254)
T ss_pred cCCcchhhccccCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 57777765 466678889999877 5556669999999999887755 554556788999999999999999998
Q ss_pred HHHHH
Q 015869 379 KGLML 383 (399)
Q Consensus 379 ~gL~l 383 (399)
+=+++
T Consensus 96 rFi~l 100 (254)
T COG4105 96 RFIRL 100 (254)
T ss_pred HHHHh
Confidence 76665
No 126
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=37.15 E-value=20 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=27.2
Q ss_pred CChHhhHHHHHHHHHhcC------CchHHHHhccchhccc
Q 015869 55 GSFLEHLVDIYRILKIWK------APDCVCLCGLFHSAYS 88 (399)
Q Consensus 55 GTf~~HL~~V~~iL~~Wg------ap~~V~~AGLfHSaYG 88 (399)
.+...|..+|..+..... ....+..|||+|-+--
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~ 42 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGK 42 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccC
Confidence 367889999988887665 5678999999997644
No 127
>PF11267 DUF3067: Protein of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A.
Probab=37.09 E-value=21 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=23.5
Q ss_pred ccccCCCChHhhHHHHHHHHHhcCCchHHHH
Q 015869 49 ECWHKHGSFLEHLVDIYRILKIWKAPDCVCL 79 (399)
Q Consensus 49 e~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~ 79 (399)
.+++..-..+.||-.|..+|..||+.+.|+.
T Consensus 40 SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~ 70 (99)
T PF11267_consen 40 SFPLTEEEYLEHLDAVAEYLNAWGQADQVRA 70 (99)
T ss_dssp T-SS-HHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 4555555678999999999999999998873
No 128
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=36.32 E-value=68 Score=19.57 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQI 363 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~ 363 (399)
.+.|..+.++++.++|...+-+.-.++.
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 5678999999999999777766665554
No 129
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=34.91 E-value=82 Score=25.60 Aligned_cols=36 Identities=33% Similarity=0.397 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869 337 EKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW 387 (399)
Q Consensus 337 d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W 387 (399)
..|.+++.+||+. -+.|+|+||..-=..|++.|..|
T Consensus 4 ~~a~~l~~~Ave~---------------D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 4 LAAKEVLKRAVEL---------------DQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHHHHHH
Confidence 4577777777764 78999999999999999998876
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=34.69 E-value=66 Score=29.87 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+++.|+.+.+-.|..+|++-+=++=|+=+|-..|+|++|...=..++.|
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44889999999999999999999999999999999999998766655543
No 131
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.39 E-value=53 Score=24.38 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHH
Q 015869 358 VVLGQIYLAKGEFEEAEREAGKGL 381 (399)
Q Consensus 358 ~vLAQ~~l~~gr~~eA~~~A~~gL 381 (399)
+=||+.|..+|+++.|+..-++-+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 458999999999999988766443
No 132
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=32.00 E-value=29 Score=25.63 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=24.1
Q ss_pred CChHhhHHHHHHHHHhc----CCch-HHHHhccchhcccC
Q 015869 55 GSFLEHLVDIYRILKIW----KAPD-CVCLCGLFHSAYSN 89 (399)
Q Consensus 55 GTf~~HL~~V~~iL~~W----gap~-~V~~AGLfHSaYGt 89 (399)
+.+..|..+|......- |.+. .+..|||+|-+ |.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDi-G~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDI-GK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcc-CC
Confidence 46788988888776543 3333 58999999984 54
No 133
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.69 E-value=1.2e+02 Score=23.65 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG 388 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG 388 (399)
.+.|..++.++++ +-+.|+|++|......|+..|+.+=
T Consensus 3 ~~~a~~l~~~Av~---------------~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 3 LQQAKELIKQAVK---------------EDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHH---------------HHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3456666666654 3577999999999999999988763
No 134
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=31.42 E-value=21 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHhcCCc-------hHHHHhccchhc
Q 015869 58 LEHLVDIYRILKIWKAP-------DCVCLCGLFHSA 86 (399)
Q Consensus 58 ~~HL~~V~~iL~~Wgap-------~~V~~AGLfHSa 86 (399)
..|..+|..+...-... ..+..|||+|=+
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDi 37 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDI 37 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 46899998877655444 449999999954
No 135
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.06 E-value=1.7e+02 Score=29.26 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=52.0
Q ss_pred cCChhhHHH--HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869 308 ILDAKEQIE--ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAERE 376 (399)
Q Consensus 308 vL~~~dq~a--ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~ 376 (399)
-..|.|.-+ |-...++.-. ...+...+-+|..+|+.++.++|+--+=++.|.++|+.-|-..-|...
T Consensus 171 e~~~~d~~~lla~~~Ll~~~~--~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~ 239 (365)
T PF09797_consen 171 ESQPADELALLAAHSLLDLYS--KTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEH 239 (365)
T ss_pred ccCchHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345666665 5555555433 344555588899999999999999999999999999999998888654
No 136
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.97 E-value=1.6e+02 Score=26.55 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=41.9
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCcCchHHH--HHHHHhccCCcHHHHHHHHHHHHHH
Q 015869 330 DGSKEKLEKAEELLLRCIEKNPFVGEPHVV--LGQIYLAKGEFEEAEREAGKGLMLL 384 (399)
Q Consensus 330 ~~~~~~~d~a~~lL~~~i~~NP~VgEP~~v--LAQ~~l~~gr~~eA~~~A~~gL~ll 384 (399)
..+....+..++..++.++..| .|.+. +++++...|+.+||+...+++..+.
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P---~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRP---DPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455557788888889999989 67654 5899999999999999998887764
No 137
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.92 E-value=49 Score=37.67 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+.+.|.....+||..||=..|-|-=||-+|--+|...+|...=+.+|+|
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 34778999999999999999999999999999999999999888887764
No 138
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.85 E-value=2.1e+02 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.2
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869 356 PHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG 388 (399)
Q Consensus 356 P~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG 388 (399)
..+-+|+++...|++++|....++++++-.+=|
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 356689999999999999999999999876543
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=30.80 E-value=79 Score=34.36 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=54.2
Q ss_pred ccccccccccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHH--HHHHHHhccCCcHHHH
Q 015869 297 PVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHV--VLGQIYLAKGEFEEAE 374 (399)
Q Consensus 297 ~iPPVF~~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~--vLAQ~~l~~gr~~eA~ 374 (399)
..++.+..-++ .-+.+| .|=+||. .......|.|+.+|+..|..-| +.|+. ..+|||+..++..+|.
T Consensus 292 ~~~~~~~~~~~----~~~~aa--~YG~A~~---~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 292 QAADLLAKRSK----RGGLAA--QYGRALQ---TYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred chHHHHHHHhC----ccchHH--HHHHHHH---HHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHH
Confidence 34444555444 234444 3667776 2233348899999999999866 66654 5679999999999999
Q ss_pred HHHHHHHHH
Q 015869 375 REAGKGLML 383 (399)
Q Consensus 375 ~~A~~gL~l 383 (399)
+...++|.+
T Consensus 361 e~~~kal~l 369 (484)
T COG4783 361 ERLKKALAL 369 (484)
T ss_pred HHHHHHHhc
Confidence 999999876
No 140
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=30.01 E-value=1.1e+02 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869 339 AEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAERE 376 (399)
Q Consensus 339 a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~ 376 (399)
|+.--.+|+...|-.|.|+-=||=|+...|++=+|-=.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~ 38 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYY 38 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHH
Confidence 45667899999999999999999999999998777544
No 141
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=29.51 E-value=25 Score=33.55 Aligned_cols=67 Identities=30% Similarity=0.347 Sum_probs=38.0
Q ss_pred hhhcccch-HHHHHHhhhchhhhHHhhhc-ccchhHHHHHHHhhccC---CCCC---ceeeecccCccccccHH-HHHHH
Q 015869 133 DLLFEYSD-QELVEHLKASDVSLINAKEK-GLFNAEEAWRKKINELL---PADG---LTVKHIKTGEDVGVSRR-VVATF 203 (399)
Q Consensus 133 ~Ll~~~~D-~el~~~l~~s~~s~~~Ar~~-g~f~~~~~wR~k~~~l~---p~~G---i~vkhi~tGE~v~Lsrr-~va~F 203 (399)
.|+|+|+| .+|+..|. +.|+|. .=|..=-.+=+|-+--+ .++- --.|++++||+..+-.+ +|+.|
T Consensus 39 ~L~~rY~~~~~Lv~~m~------~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~~p~~llD~Llv~al 112 (180)
T cd07910 39 SLIFRYPEKPELVEAMS------DLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKGEPERLLDRLLVAAL 112 (180)
T ss_pred HHHHHcCCcHhHHHHHH------HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccCChHHHHHHHHHHHH
Confidence 57889987 78888875 455543 32322223322221111 1221 13678899999887555 77777
Q ss_pred HH
Q 015869 204 VM 205 (399)
Q Consensus 204 ~~ 205 (399)
|-
T Consensus 113 IE 114 (180)
T cd07910 113 IE 114 (180)
T ss_pred HH
Confidence 64
No 142
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=29.30 E-value=41 Score=35.18 Aligned_cols=23 Identities=39% Similarity=0.915 Sum_probs=17.0
Q ss_pred CcccccCCCCCCchHHHHHHHHHHH
Q 015869 236 SFSALWPGDGKPGLWMNSLSRMGAI 260 (399)
Q Consensus 236 ~w~sLWPG~~kPglw~s~~Srmg~~ 260 (399)
.|.|-| |.|||| |.-.-|.|..-
T Consensus 193 ~w~s~~-g~grpg-Whiecsam~~~ 215 (463)
T PRK00260 193 SWESPW-GKGRPG-WHIECSAMSTK 215 (463)
T ss_pred CCCCCC-CCCCCC-hhHHHHHHHHH
Confidence 599999 999999 55555555443
No 143
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=28.28 E-value=52 Score=37.56 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+.|..||+.|+++-|----=+|+|.|||-.+++.+.|+.+=-.|++.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 567899999999999999999999999999999999999988888763
No 144
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=26.94 E-value=1e+02 Score=28.82 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869 318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAERE 376 (399)
Q Consensus 318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~ 376 (399)
.+..|.++. ..+.+.++.||...=-+-|=+.|..++-+-+|...|+|+||.+-
T Consensus 14 i~~~~~aL~------~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rv 66 (153)
T TIGR02561 14 IEVLMYALR------SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARI 66 (153)
T ss_pred HHHHHHHHh------cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHH
Confidence 456666665 23467799999999899999999999999999999999999764
No 145
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=1.1e+02 Score=33.47 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
.+.+||.+++++++..||--=---+.+|.+++..|+++++-.--++.|.-
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 45799999999999999988878888999999999999998887777754
No 146
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.88 E-value=1.2e+02 Score=24.90 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE 386 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~ 386 (399)
+++|..|+.++++. -++|+|+||..-=..||++++-
T Consensus 3 l~kai~Lv~~A~~e---------------D~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDE---------------DEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHh---------------hHhhhHHHHHHHHHHHHHHHHH
Confidence 45677777777654 4677777777777777776653
No 147
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=2e+02 Score=31.74 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=56.6
Q ss_pred ccCChhhHHHHHHHHHHhhccCCCCC--------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHH
Q 015869 307 RILDAKEQIEARDLYWEAVCGNSDGS--------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEE 372 (399)
Q Consensus 307 ~vL~~~dq~aArdlYWeav~~~~~~~--------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~e 372 (399)
.-++.+|...|-.+|=+||. -+.+ .....+|-.==.+++++||--+--.-=++-.++.-|+|+|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34677888899999999986 4432 1122333333457889999998888888888899999999
Q ss_pred HHHHHHHHHHH
Q 015869 373 AEREAGKGLML 383 (399)
Q Consensus 373 A~~~A~~gL~l 383 (399)
|...=.+||+.
T Consensus 89 A~~ay~~GL~~ 99 (539)
T KOG0548|consen 89 AILAYSEGLEK 99 (539)
T ss_pred HHHHHHHHhhc
Confidence 99999999864
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=25.40 E-value=60 Score=31.97 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=20.9
Q ss_pred chHHHHHHHHhccCCcHHHHHHHHH
Q 015869 355 EPHVVLGQIYLAKGEFEEAEREAGK 379 (399)
Q Consensus 355 EP~~vLAQ~~l~~gr~~eA~~~A~~ 379 (399)
|+..++.|+||.++|++.|+++-..
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7888999999999999999877554
No 149
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=24.89 E-value=1.3e+02 Score=35.09 Aligned_cols=45 Identities=33% Similarity=0.427 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869 335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK 379 (399)
Q Consensus 335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~ 379 (399)
..+.|++++...|.++|-+-+|.--||-||=..|+.+.+-...-.
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll 198 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL 198 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH
Confidence 367899999999999999999999999999999999888765543
No 150
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=23.81 E-value=67 Score=34.53 Aligned_cols=25 Identities=36% Similarity=0.809 Sum_probs=21.0
Q ss_pred CCcccccCCCCCCchHHHHHHHHHHHH
Q 015869 235 NSFSALWPGDGKPGLWMNSLSRMGAIY 261 (399)
Q Consensus 235 ~~w~sLWPG~~kPglw~s~~Srmg~~~ 261 (399)
-.|.|=| |.|+|| |+-.-|.|+.-|
T Consensus 205 ~~W~SpW-G~GRPG-WHIECsaMs~~~ 229 (490)
T PRK14536 205 LTWDSPW-GRGYPG-WHIECSAMSMKY 229 (490)
T ss_pred CcccCCC-CCCCCC-hHHHHHHHHHHH
Confidence 4799999 999999 998888887654
No 151
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.63 E-value=1.9e+02 Score=23.75 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869 337 EKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE 386 (399)
Q Consensus 337 d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~ 386 (399)
.+|.+++.+||+. -++|+|+||..-=.+|+++|..
T Consensus 4 ~~Ai~~a~~Ave~---------------D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQR---------------DQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHHHHHH
Confidence 3577788888775 7899999999998888888865
No 152
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=22.13 E-value=59 Score=28.83 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=27.1
Q ss_pred HHHHHhcccchhhhHhhcCCCchhHHHHHHHhCCCc
Q 015869 14 ETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGE 49 (399)
Q Consensus 14 ~~l~~~arpfLr~e~~~~D~~Lp~ll~~Lr~~GAge 49 (399)
++|++.|+-||.+. .-.|.-+...++||++-|-.+
T Consensus 3 e~li~~A~~FL~~p-~V~~sp~~~k~~FL~sKGLt~ 37 (136)
T PF04695_consen 3 EDLIEQAVKFLQDP-KVRNSPLEKKIAFLESKGLTE 37 (136)
T ss_dssp HHHHHHHHHHHCTT-TCCCS-HHHHHHHHHHCT--H
T ss_pred HHHHHHHHHHhCCc-ccccCCHHHHHHHHHcCCCCH
Confidence 57999999999987 334777889999999998654
No 153
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=21.22 E-value=97 Score=33.37 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=31.2
Q ss_pred hCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869 349 KNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383 (399)
Q Consensus 349 ~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l 383 (399)
-+|=-.+-|.-|+.+|...|||+||....+++|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL 104 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL 104 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46767777889999999999999999999999986
No 154
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=20.17 E-value=1.3e+02 Score=32.64 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=48.0
Q ss_pred CC-ChHhhHHHHHHHHHhcCCchHHHHhccchhcccCccccccCCCCCcchHHHHHhhchhhhHHhhh
Q 015869 54 HG-SFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHL 120 (399)
Q Consensus 54 ~G-Tf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~~f~laifdp~~~R~~vr~lIG~~AE~LVyl 120 (399)
+| .+..|++.|.=||+.-|+...|..||+.|-+--- .. ..=.+|+..+|...=.||+-
T Consensus 96 ~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDD-----t~----~S~eeI~~~FG~gVa~LV~E 154 (543)
T KOG1157|consen 96 DDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDD-----TF----MSYEEILRHFGTGVADLVEE 154 (543)
T ss_pred CCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhh-----cc----CCHHHHHHHhCccHHHHHHH
Confidence 44 7899999999999999999999999999976442 22 34468999999998888874
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=20.03 E-value=3.9e+02 Score=20.51 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhCCCcCchHHHHHH-HHhccCCcHHHHHHHHHHHH
Q 015869 336 LEKAEELLLRCIEKNPFVGEPHVVLGQ-IYLAKGEFEEAEREAGKGLM 382 (399)
Q Consensus 336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ-~~l~~gr~~eA~~~A~~gL~ 382 (399)
...+.+.+.+++..+|--...+..... +|...|++++|...-.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777765555555666666 67777777777777776644
Done!