Your job contains 1 sequence.
>015870
MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS
TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD
KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK
QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG
KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA
DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS
RALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015870
(399 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 1564 1.4e-160 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 1510 7.2e-155 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 1399 4.2e-143 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 1247 5.3e-127 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 1172 4.7e-119 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 1172 4.7e-119 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 1171 6.0e-119 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 1170 7.7e-119 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 1170 7.7e-119 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 1170 7.7e-119 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 1170 7.7e-119 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 1164 3.3e-118 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 1164 3.3e-118 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 1162 5.4e-118 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 1162 5.4e-118 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 1162 5.4e-118 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 1162 5.4e-118 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 1162 5.4e-118 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 1158 1.4e-117 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 1157 1.8e-117 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 1154 3.8e-117 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 1154 3.8e-117 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 1153 4.9e-117 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 1151 7.9e-117 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 1139 1.5e-115 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 1131 1.0e-114 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 1129 1.7e-114 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 993 2.1e-113 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 1111 1.4e-112 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 1110 1.8e-112 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 1099 2.6e-111 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 1097 4.2e-111 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 1096 5.3e-111 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 1095 6.8e-111 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 1095 6.8e-111 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 1093 1.1e-110 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 1093 1.1e-110 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 1093 1.1e-110 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 1091 1.8e-110 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 1086 6.1e-110 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 1085 7.8e-110 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 1082 1.6e-109 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 1076 7.0e-109 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 1062 2.1e-107 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 1054 1.5e-106 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 760 3.1e-106 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 760 3.1e-106 2
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 1045 1.4e-105 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 1028 8.6e-104 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 1000 7.9e-101 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 997 1.7e-100 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 731 3.2e-100 2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 986 2.4e-99 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 985 3.1e-99 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 983 5.0e-99 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 945 5.3e-95 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 945 5.3e-95 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 944 6.8e-95 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 933 1.0e-93 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 903 1.5e-90 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 889 4.6e-89 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 883 2.0e-88 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 877 8.6e-88 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 876 1.1e-87 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 874 1.8e-87 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 865 1.6e-86 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 810 1.1e-80 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 715 1.3e-70 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 708 7.0e-70 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 688 9.2e-68 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 598 3.2e-58 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 596 5.1e-58 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 557 7.0e-54 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 557 7.0e-54 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 556 8.9e-54 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 555 1.1e-53 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 554 1.5e-53 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 488 1.4e-46 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 477 2.1e-45 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 416 7.5e-42 2
UNIPROTKB|B1ANR1 - symbol:PABPC4 "Polyadenylate-binding p... 434 7.5e-41 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 431 1.6e-40 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 429 2.6e-40 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 406 7.0e-38 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 394 1.3e-36 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 267 1.5e-35 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 266 1.9e-35 2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 266 1.9e-35 2
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 266 1.9e-35 2
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 266 1.9e-35 2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 266 1.9e-35 2
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 264 2.4e-35 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 265 3.1e-35 2
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 264 3.1e-35 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 260 1.0e-34 2
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 260 1.3e-34 2
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 373 2.2e-34 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 257 1.2e-33 2
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 252 1.9e-33 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 260 2.3e-33 2
WARNING: Descriptions of 1603 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 1564 (555.6 bits), Expect = 1.4e-160, P = 1.4e-160
Identities = 294/379 (77%), Positives = 343/379 (90%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
FG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRRSLGYGYVNF+N Q+AAR
Sbjct: 33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAAR 92
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A++ LN+ PL GKPIRVMYSHRDPS+R+SGAGNIFIKNLD++IDHKALHDTFS+FGNI+S
Sbjct: 93 AIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +GQSKGYGFVQ+ NEESAQKAIEKLNGMLLNDKQVYVG FLR+QERD+ NK+
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKT 212
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNVYVKNL+ESTT++DL+ +FGEYG ITSAVVM+DG+GKSK FGFVNFEN+DDAARAV
Sbjct: 213 KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E+LNG KFDDKEWYVG+AQKKSERE EL+ ++EQN+KEAADKFQ +NLY+KNLD SI DE
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDE 332
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK++FSPFG++TS KVMRDP+G S+GSGFVAF+TPEEA+ A+ +++GKM+ SKPLYVA+
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKEDRR RLQ Q R
Sbjct: 393 AQRKEDRRVRLQAQFSQVR 411
Score = 129 (50.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEE 358
A +F +LY+ +LD ++ D +L F G++ + +V RD + S G G+V F+ P++
Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQD 89
Query: 359 ASRALLEMNGKMVVSKPLYVALAQR 383
A+RA+ E+N + KP+ V + R
Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSHR 114
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
Identities = 288/378 (76%), Positives = 333/378 (88%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GTTSLYVGDL+A VTDSQL++ F Q GQVVSVRVCRD++TRRSLGYGYVN++ Q+A+RA
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L LNF LNG+ IRVMYS RDPSLRKSG GNIFIKNLDK+IDHKALH+TFSAFG ILSC
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KVA D +GQSKGYGFVQ+D +E+AQ AI+KLNGMLLNDKQVYVG F+ K +RD K K
Sbjct: 163 KVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNLSES ++E+L K FGE+G TS V+MRDG+GKSK FGFVNFENSDDAARAV+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVD 282
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
ALNGK FDDKEW+VGKAQKKSERE ELK +FEQ++KEAADK QG+NLY+KNLD+S+ D+K
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITSCKVMRDPSG+SRGSGFVAFSTPEEA+RA+ EMNGKM+V+KPLYVALA
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKEDR+ARLQ Q R
Sbjct: 403 QRKEDRKARLQAQFSQMR 420
Score = 441 (160.3 bits), Expect = 3.0e-41, P = 3.0e-41
Identities = 95/286 (33%), Positives = 160/286 (55%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQ 166
+ G ++++ +LD + L + F+ G ++S +V D+ + S GYG+V + + A
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
+A+ +LN M LN + + V + +R D + KS N+++KNL +S + L ++F +
Sbjct: 101 RALNELNFMALNGRAIRVMYSVR----DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAF 156
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S V D G+SK +GFV ++ + A A++ LNG +DK+ YVG K +R+
Sbjct: 157 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRD- 215
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
+ +K + N+Y+KNL +S+ DE+L ++F FG TSC +MRD G S+
Sbjct: 216 -----------PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK 264
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F ++A+RA+ +NGK K +V AQ+K +R L+
Sbjct: 265 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELK 310
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
Identities = 262/375 (69%), Positives = 317/375 (84%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ NVTDSQLYD F ++ QVVSVRVCRD +T SLGYGYVN+SN +A +A++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+ FS G I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQS+GYGFVQFD E+SA+ AIEKLNG +LNDKQ++VG FLRK+ER++ +K KFTN
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNLSE+TT+++L+ +FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAARAVEALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKKFDDKEWYVGKAQKKSERELEL ++EQ + +KF G NLY+KNLDD++ DEKL++
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF+ FG+ITSCKVMRDPSG S+GSGFVAFS EASR L EMNGKMV KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 385 EDRRARLQVCLLQCR 399
E+RRA+LQ Q R
Sbjct: 407 EERRAKLQAQFSQMR 421
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 114/294 (38%), Positives = 167/294 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +L+ +V + L++ F+ G +VS +V D +S GYG+V F A A
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNA 190
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
+E LN LN K I V R+ + K N+++KNL +A L TF +G+
Sbjct: 191 IEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGS 250
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V D +G+S+ +GFV F+N E A +A+E LNG +DK+ YVG +K ER+ E+
Sbjct: 251 ISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 310
Query: 198 NK----------SKFT--NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
++ +KF N+YVKNL ++ T+E L++ F E+GTITS VMRD G SK
Sbjct: 311 SRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS 370
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GFV F + +A+R + +NGK K YV AQ+K ER +L+ QF Q M+ A
Sbjct: 371 GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQ-MRPA 423
Score = 143 (55.4 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F +LYV +L+ VTD +L +LF + G + S +V RD S S G G+V FS A EA+R
Sbjct: 325 FDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGT-SKGSGFVAFSAASEASR 383
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLR 107
L +N + GKP+ V + R R
Sbjct: 384 VLNEMNGKMVGGKPLYVALAQRKEERR 410
Score = 45 (20.9 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDL 219
D ES A K+ GMLL Q V H L E S+ +V ++N+++ +++
Sbjct: 587 DQIESEHAA--KVTGMLLEMDQTEVLHLLESPEA-LNAKVSEALDV-LRNVNQPSSQGSE 642
Query: 220 QKSFGEYGTITSAVVMRD 237
G + +++ + D
Sbjct: 643 GNKSGSPSDLLASLSIND 660
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
Identities = 243/378 (64%), Positives = 298/378 (78%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER + N +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKEDRRA LQ Q R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 227/369 (61%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 100/281 (35%), Positives = 166/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Score = 410 (149.4 bits), Expect = 5.9e-38, P = 5.9e-38
Identities = 95/292 (32%), Positives = 160/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + FS FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 216 KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 227/369 (61%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 449 (163.1 bits), Expect = 3.0e-42, P = 3.0e-42
Identities = 100/281 (35%), Positives = 166/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Score = 410 (149.4 bits), Expect = 8.2e-38, P = 8.2e-38
Identities = 95/292 (32%), Positives = 160/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + FS FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 216 KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 131 (51.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
Identities = 227/369 (61%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 102/281 (36%), Positives = 167/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 407 (148.3 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 95/292 (32%), Positives = 161/292 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A + A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + FS FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 216 KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 227/369 (61%), Positives = 290/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 102/281 (36%), Positives = 167/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 410 (149.4 bits), Expect = 5.9e-38, P = 5.9e-38
Identities = 95/292 (32%), Positives = 162/292 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A + A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D ++L + FS FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 216 KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 227/369 (61%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E +DA +AVE
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 101/281 (35%), Positives = 167/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 414 (150.8 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 96/292 (32%), Positives = 162/292 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A + A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D ++L + FS FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 227/369 (61%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E +DA +AVE
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 101/281 (35%), Positives = 167/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 414 (150.8 bits), Expect = 2.4e-38, P = 2.4e-38
Identities = 96/292 (32%), Positives = 162/292 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A + A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D ++L + FS FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 216 KTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 227/369 (61%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 102/281 (36%), Positives = 167/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Score = 406 (148.0 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 95/292 (32%), Positives = 160/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A + A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + FS FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER E
Sbjct: 216 KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 221/369 (59%), Positives = 292/369 (79%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 105/291 (36%), Positives = 167/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 108/293 (36%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 221/369 (59%), Positives = 292/369 (79%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 105/291 (36%), Positives = 167/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 108/293 (36%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 221/369 (59%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 105/291 (36%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/293 (37%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L D F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 221/369 (59%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 105/291 (36%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/293 (37%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L D F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 221/369 (59%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 105/291 (36%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/293 (37%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L D F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 221/369 (59%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 105/291 (36%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/293 (37%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L D F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 221/369 (59%), Positives = 291/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 105/291 (36%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/293 (37%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L D F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
Identities = 220/369 (59%), Positives = 290/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL + T++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/293 (37%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L D F FG
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 105/291 (36%), Positives = 165/291 (56%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 122 (48.0 bits), Expect = 0.00026, P = 0.00026
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 220/369 (59%), Positives = 290/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE +DA RAV+
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD +DDE+L
Sbjct: 251 MNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 103/291 (35%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE E M A +F N+YIKN + +DDEKLK++F +G S +VM D
Sbjct: 177 KEREAE--------MGARAKEF--TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELK 277
Score = 436 (158.5 bits), Expect = 5.8e-41, P = 5.8e-41
Identities = 105/293 (35%), Positives = 162/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + F +G
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS +V TD +G+SKG+GFV F+ E AQ+A++++NG +N KQVYVG +K ER TE
Sbjct: 216 PALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRM 386
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 220/369 (59%), Positives = 290/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E ++ L+ F +YG S VM D +GKS+ FGFV+FE +DA RAV+
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM D G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 103/291 (35%), Positives = 169/291 (58%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DD+KLK +FS +G+ S +VM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G SRG GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELK 277
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 106/293 (36%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D L D FS +G
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
N +S +V TD NG+S+G+GFV F+ E AQ+A++++NG +N K +YVG +K ER TE
Sbjct: 216 NAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM DG G+SK
Sbjct: 276 L-KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G+I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 225/369 (60%), Positives = 288/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +DA +AVE
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 251 MNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAHL 378
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 103/281 (36%), Positives = 167/281 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+LK+LFS +G S KVM DP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 416 (151.5 bits), Expect = 1.2e-38, P = 1.2e-38
Identities = 98/292 (33%), Positives = 161/292 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + +A + A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN +D + L + FS +G
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER E
Sbjct: 216 KTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 276 LKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M A + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MDAAGSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 219/369 (59%), Positives = 290/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L++ FG+YG S VM D GKS+ FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F+PFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 437 (158.9 bits), Expect = 4.4e-41, P = 4.4e-41
Identities = 100/291 (34%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+ F +G+ S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GFV+F E+A +A+ +MNGK + K ++V AQ+K +R+ L+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELK 277
Score = 422 (153.6 bits), Expect = 2.5e-39, P = 2.5e-39
Identities = 103/293 (35%), Positives = 161/293 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAID 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + F +G
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+S+G+GFV F+ E AQKA++ +NG LN K ++VG +K ER TE
Sbjct: 216 AALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +G+ITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 126 (49.4 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 217/369 (58%), Positives = 290/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 439 (159.6 bits), Expect = 2.5e-41, P = 2.5e-41
Identities = 99/291 (34%), Positives = 168/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV+F E+A +A+ EMNGK + K ++V AQ+K +R+ L+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELK 277
Score = 425 (154.7 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 104/293 (35%), Positives = 161/293 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAID 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN ++ + L + F +G
Sbjct: 157 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD NG+SKG+GFV F+ E AQKA++++NG +N K ++VG +K ER TE
Sbjct: 216 PALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 276 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
Identities = 220/369 (59%), Positives = 288/369 (78%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 73 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 132
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 133 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEF 191
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + ++ L++ F +YG S VM D GKS+ FGFV++E +DA +AVE
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG + + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 252 MNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 312 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 371 RKEERKAHL 379
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 101/281 (35%), Positives = 164/281 (58%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 73 MNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE E
Sbjct: 129 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE---- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
M A +F N+YIKN D +DD++LK+LF +G S KVM DP+G SRG GFV
Sbjct: 184 ----MGAKAKEF--TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNG + K ++V AQ+K +R+A L+
Sbjct: 238 SYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 278
Score = 407 (148.3 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 95/292 (32%), Positives = 160/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + +A + A
Sbjct: 98 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIE 157
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN +D + L + F +G
Sbjct: 158 -KMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYG 216
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD G+S+G+GFV ++ E A KA+E++NG LN K V+VG +K ER E
Sbjct: 217 KTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAE 276
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+SK
Sbjct: 277 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKG 335
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 336 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 387
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358
A + A+LY+ +L I + L + FSP G + S +V RD + S G +V F P +
Sbjct: 6 AGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 65
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
A RAL MN +V KP+ + +QR R
Sbjct: 66 AERALDTMNFDVVKGKPIRIMWSQRDPSLR 95
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 215/379 (56%), Positives = 287/379 (75%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N ++ +AL
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCK
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G +KGYGFV FD+ ESA AIE +NGMLLNDK+VYVGH + ++ER +++ K+
Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL TE++ FG++G ITS +++D + K + FGFVN+ N + A +AV
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K++ K+ YVG+AQKK ERE EL+ ++EQ E +K+QG NL+IKNL D +DDE
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+LK FS FG+ITS K+M D G S+G GFV ++TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKE RR++L+ +Q R
Sbjct: 439 AQRKEVRRSQLEA-QIQAR 456
Score = 285 (105.4 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 62/184 (33%), Positives = 104/184 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT ++++ +L+ + + L+D F+ G+++S +V D + GYG+V+F + + A A
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAA 224
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN K + V + S R+ + K+ N++IKNLD I + D F F
Sbjct: 225 IEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQF 284
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D N + +G+GFV + N E AQKA+++LN K++YVG +K ER+
Sbjct: 285 GEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
Query: 196 EINK 199
E+ K
Sbjct: 345 ELRK 348
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
Identities = 217/369 (58%), Positives = 283/369 (76%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A+VT++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+NF +A AL+
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D NG SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF ++ER+ E+ +F
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E E L+ F E+G S VM D G+S+ FGFVNF N DA RAV
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG NLY+KNLDDSIDDEKL
Sbjct: 251 MNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F+P+G+ITS KVM D G SRG GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 413 (150.4 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 95/281 (33%), Positives = 154/281 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L+ FS G I+S +V D + +S GY ++ F A+ A++
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS N+++KN+ ES + L +F +G I S
Sbjct: 72 MNYEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG + + ERE E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEM--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + ID EKLK +F+ FG S VM D G SRG GFV
Sbjct: 184 -------GAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F +A RA+ EMNGK + + LYV AQ++ +R+ L+
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELK 277
Score = 397 (144.8 bits), Expect = 1.5e-36, P = 1.5e-36
Identities = 100/293 (34%), Positives = 156/293 (53%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD F+ G ++S +V D + + G+ + A A
Sbjct: 97 GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIE 156
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
M + K + R + GA N++IKN + ID + L + F+ FG
Sbjct: 157 T-MNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS V TD G+S+G+GFV F N A++A+ ++NG LN + +YVG ++ ER E
Sbjct: 216 KTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL +S +E L+K F YGTITSA VM DG G S+
Sbjct: 276 L-KRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHSR 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRL 386
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 993 (354.6 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 184/321 (57%), Positives = 252/321 (78%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ + K+
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN++ T+++ + F +YG +TS+ + RD + GKS+ FGFVNF + +DA++A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN K+F + YVG+AQKK ERE EL+ +E +E A K+QG NLYIKNLDD +DD
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD 340
EKL+QLFS FG ITS KVMRD
Sbjct: 360 EKLRQLFSEFGPITSAKVMRD 380
Score = 400 (145.9 bits), Expect = 2.0e-36, P = 2.0e-36
Identities = 90/284 (31%), Positives = 162/284 (57%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D +G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 231
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGS 348
+F++ MK F N+Y+KN++ + D++ + LF +G +TS + RD +G SRG
Sbjct: 232 SKFDE-MKA---NF--TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
GFV F++ E+AS+A+ E+N K + LYV AQ+K +R L+
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELR 329
Score = 248 (92.4 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 54/186 (29%), Positives = 103/186 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ + A++A
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQA 205
Query: 82 LEMLNFTPLNGKPIRVMYS--HRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + +D + K+ NI++KN++ + F +
Sbjct: 206 IKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKY 265
Query: 136 GNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G++ S +A D G+S+G+GFV F + E A KA+++LN + + +YVG +K ER+
Sbjct: 266 GDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHERE 325
Query: 195 TEINKS 200
E+ KS
Sbjct: 326 EELRKS 331
Score = 146 (56.5 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 28/50 (56%), Positives = 41/50 (82%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV F+ P++A++A+ EMN +MV +KPLYVALAQRK+ R+ +L+
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE 479
Score = 117 (46.2 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
GKSK FGFV F N DDA +AV +N + ++K YV AQ+K R K+Q EQ+++
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 109 (43.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++N+K +YV RK R ++ +S
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQS 481
Score = 72 (30.4 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
+LY+ +L+ V D +L LF++ G + S +V RD T
Sbjct: 347 NLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 211/369 (57%), Positives = 283/369 (76%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+ E+ +F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE ++A +AV
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNLDDSIDD+KL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 417 (151.9 bits), Expect = 6.9e-39, P = 6.9e-39
Identities = 99/292 (33%), Positives = 161/292 (55%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
Score = 404 (147.3 bits), Expect = 2.3e-37, P = 2.3e-37
Identities = 101/293 (34%), Positives = 157/293 (53%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V D R G+ + AQ+A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAIN 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +LN + + R+ L R NI++KNL +D + L D FS FG
Sbjct: 157 TMNGMLLNDRKVFVGHFKSR-REREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ ER E
Sbjct: 216 KMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G G SK
Sbjct: 276 L-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 213/369 (57%), Positives = 285/369 (77%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKG+GFV F+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + ++ L FG +G + S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K YVG AQKK +R +ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 433 (157.5 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 106/293 (36%), Positives = 158/293 (53%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA-R 80
G ++++ +L + + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 97 GVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIE 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +LN + + R+ L R N++IKN +D K L+ F FG
Sbjct: 157 KMNGMLLNDRKVFVGQFKSR-KEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+LS KV TD G+SKG+GFV F+ E AQKA++++NG LN K +YVG +K +R E
Sbjct: 216 QVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIE 275
Query: 197 INKSKFT-------------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E LQK F +GTITS VM +G G+SK
Sbjct: 276 L-KRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRM 386
Score = 426 (155.0 bits), Expect = 8.3e-40, P = 8.3e-40
Identities = 102/281 (36%), Positives = 161/281 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS+ G ILS +V D + +S GY V F+ A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K V + +RD + +S NV++KNL+++ + L +F +G I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTR 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KE F N+YIKN D +DD+ L LF FG + S KVM D G S+G GFV
Sbjct: 187 ----TKE----F--TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F E+A +A+ EMNGK + K +YV AQ+K DR L+
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELK 277
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 210/369 (56%), Positives = 280/369 (75%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID+KAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+ E+ +F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL E LQ F ++G I S VMRD G S+ FGFVNFE +DA +AV
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNLDDSIDDEKL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F+P+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 101/292 (34%), Positives = 161/292 (55%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D+ L+ LFS FG I S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F E+A +A+ +MNGK V + LYV AQ++ +R+ L+
Sbjct: 226 DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELK 277
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 105/292 (35%), Positives = 159/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V D R G+ + AQ A R
Sbjct: 97 GVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIR 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +LN + + R+ L R NI++KNL +D + L D FS FG
Sbjct: 157 TMNGMLLNDRKVFVGHFKSR-REREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
ILS KV D +G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ ER E
Sbjct: 216 KILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNE 275
Query: 197 INK-------SKFT-----NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + + T N+YVKNL +S +E L+K F YG ITSA VM +G G SK
Sbjct: 276 LKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG-GHSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRL 386
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 205/369 (55%), Positives = 285/369 (77%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D +G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF ++ER+ E +F
Sbjct: 132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E ++ L++ F +G S VM D G+S+ FGFVN+ N ++A +AV
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNLDD IDD++L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 433 (157.5 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 98/292 (33%), Positives = 166/292 (56%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ +GAG ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 1 MNATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS NV++KNL ES + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ +GFV+FE + A RA++ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERELE A + N+YIKN + +DD++L+++FS FG+ S KVM D
Sbjct: 176 RRERELEY----------GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G SRG GFV + EEA +A+ EMNGK V + +YV AQ++ +R+ L+
Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELK 277
Score = 425 (154.7 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 105/295 (35%), Positives = 163/295 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA-QEAAR 80
G ++++ +L+ ++ + LYD F+ G ++S +V D R G+ + A A +
Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQ 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFS 133
+ +LN + + S R+ L + GA N++IKN + +D K L + FS
Sbjct: 157 TMNGMLLNDRKVF---VGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGN LS KV D G+S+G+GFV + N E AQKA+ ++NG +N + +YVG ++ ER
Sbjct: 213 AFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E IN+ + N+YVKNL + ++ L+K F YGTITSA VM +G G
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 205/369 (55%), Positives = 282/369 (76%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+NF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+P+R+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D NG S+G+GFV F+ +E+A +AI+ +NGMLLND++V+VGHF ++ER+ E +F
Sbjct: 132 CDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + + L++ F +G S VM D G+SK FGFVNFE ++A +AV
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 424 (154.3 bits), Expect = 1.5e-39, P = 1.5e-39
Identities = 97/292 (33%), Positives = 164/292 (56%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ + +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + V + +RD + KS NV++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPVRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D +G S+ GFV+FE + A RA++ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE E A + N+YIKN D +DD +L+++FS FG S KVM D
Sbjct: 176 RKEREAEF----------GARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV F EEA +A+ +MNGK + + +YV AQ++ +R++ L+
Sbjct: 226 HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELK 277
Score = 413 (150.4 bits), Expect = 2.7e-38, P = 2.7e-38
Identities = 102/292 (34%), Positives = 155/292 (53%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R G+ + A A
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRA-I 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
M + K + R + GA N++IKN +D L + FS FG
Sbjct: 156 QTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D G+SKG+GFV F+ E AQKA+ +NG +N + VYVG ++ ER +E
Sbjct: 216 KTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSE 275
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+YVKNL + +E L+K F YGTITSA VM +G G SK
Sbjct: 276 LKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG-GHSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
Identities = 209/373 (56%), Positives = 283/373 (75%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+ +
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 106/292 (36%), Positives = 162/292 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + + G+ + A E A
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA-I 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M K + R + GA N++IKN + +D + L D F FG
Sbjct: 156 KKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 197 INKS-------KFT-----NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ ++ + T N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 276 LKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 432 (157.1 bits), Expect = 1.7e-40, P = 1.7e-40
Identities = 102/291 (35%), Positives = 163/291 (56%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 205 (77.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 61/185 (32%), Positives = 92/185 (49%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+Q + I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK FGFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVC 339
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA---------- 299
F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLF-SPFGSITSCK---VMRDPSGISRGSGFVAFST 355
+ F A +N ++ +L SP + + PS I G+ V FST
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFST 459
Query: 356 PEEAS 360
AS
Sbjct: 460 MRPAS 464
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
Identities = 209/369 (56%), Positives = 281/369 (76%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+ E+ +F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE ++A +AV
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNLDDSIDDEKL
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 430 (156.4 bits), Expect = 2.1e-40, P = 2.1e-40
Identities = 99/292 (33%), Positives = 164/292 (56%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE+EL A + N+Y+KNL +D+++L+ LFS FG + S KVMRD
Sbjct: 176 RREREVEL----------GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F EEA +A++ MNG+ V + LYV AQ++ +R+ L+
Sbjct: 226 DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELK 277
Score = 416 (151.5 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 103/292 (35%), Positives = 158/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V D R G+ + AQ A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAIS 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +LN + + R+ L R NI++KNL +D + L D FS FG
Sbjct: 157 TMNGMLLNDRKVFVGHFKSR-REREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+LS KV D +G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ ER E
Sbjct: 216 KMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNE 275
Query: 197 INK-------SKFT-----NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + + T N+YVKNL +S +E L+K F YG ITSA VM +G G SK
Sbjct: 276 LKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 205/371 (55%), Positives = 287/371 (77%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+KAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV L ++ERD+++ ++K
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K FGFVN+E +DA +AV
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EALN + + ++ YVG+AQKK+ER LK Q+E E K+QG NL++KNLDDS+DDE
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 381 AQRKEDRRARL 391
AQRK+ RR++L
Sbjct: 397 AQRKDVRRSQL 407
Score = 387 (141.3 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 90/284 (31%), Positives = 152/284 (53%)
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 163
S+ S A ++++ +L+ ++ L+D FS G++ S +V D + S GY +V F++ E
Sbjct: 32 SVENSSA-SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHE 90
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
+ +KAIE+LN + + + +RD + K N+++KNL + L +F
Sbjct: 91 AGRKAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTF 146
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S+ + D +GKSK FGFV+FE A A++ALNG + +E YV + E
Sbjct: 147 SVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKE 206
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R+ +L+ K NLY+KN++ DE+ ++LF+ FG I S + +D G
Sbjct: 207 RDSQLEET----------KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADG 256
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+G GFV + E+A +A+ +N + + LYV AQ+K +R
Sbjct: 257 KLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 340 (124.7 bits), Expect = 4.5e-32, Sum P(2) = 4.5e-32
Identities = 85/235 (36%), Positives = 129/235 (54%)
Query: 75 AQEAARALE--MLNFTPLNGKPIRVMYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHD 130
A+EA AL +LN + P + RD L ++ A N+++KN++ + +
Sbjct: 179 AKEAIDALNGMLLNGQEIYVAP-HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 237
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG----- 185
F+ FG I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG
Sbjct: 238 LFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297
Query: 186 ----HFLRKQERDTEINK-SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
H L+KQ + K +K+ N++VKNL +S +E L++ F YGTITSA VMR
Sbjct: 298 NERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE 357
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+GKSK FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 358 NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 267 (99.0 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 57/178 (32%), Positives = 100/178 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 182
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG +K ER
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 193 (73.0 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 57/190 (30%), Positives = 95/190 (50%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEA 262
++YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K G N++IKNL ID++ L
Sbjct: 99 LNYTPIKGRLCRI----MWSQRDPSLRK-----------KGSG-NIFIKNLHPDIDNKAL 142
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +YVA
Sbjct: 143 YDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHL 202
Query: 383 RKEDRRARLQ 392
+++R ++L+
Sbjct: 203 SRKERDSQLE 212
Score = 38 (18.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
D+ ++Y K ++ +L K + + +EAA K G
Sbjct: 496 DNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITG 532
Score = 37 (18.1 bits), Expect = 4.5e-32, Sum P(2) = 4.5e-32
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 286 LELKHQFEQNMKEAADKFQ 304
LE FEQ+ KEA+ ++
Sbjct: 546 LESDELFEQHYKEASAAYE 564
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 209/373 (56%), Positives = 282/373 (75%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A R
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+ E+
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTN+YVKNL E+ LQ F +G + S VMRD G S+ FGFVNF+ ++A +
Sbjct: 187 AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNLDDSID
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG+++ +KPLYV
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERKAIL 378
Score = 435 (158.2 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 100/292 (34%), Positives = 166/292 (56%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE+EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREVEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R++ L+
Sbjct: 226 DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELK 277
Score = 417 (151.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 103/292 (35%), Positives = 159/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V D R G+ + AQ+A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAIT 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +LN + + R+ L R NI++KNL +D + L D FS FG
Sbjct: 157 TMNGMLLNDRKVFVGHFKSR-REREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+LS KV D +G S+G+GFV F E AQKA+ +NG ++ + +YVG ++ ER +E
Sbjct: 216 KMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSE 275
Query: 197 INK-------SKFT-----NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + + T N+YVKNL +S +E L+K F YG ITSA VM +G G SK
Sbjct: 276 LKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRL 386
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 217/384 (56%), Positives = 283/384 (73%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD +TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID K L+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND++V+VG F +++R E+ +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K FTNVY+KNL E +E LQ F +G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF-----------QGAN 307
AV+ +NGK + K+ YVG+AQKK ER+ ELKH+F Q MK+ K QG N
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKPKIEQVPQDRSVRCQGVN 305
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++V +KPLYVALAQRKE+R+A L
Sbjct: 365 GRIVATKPLYVALAQRKEERQAHL 388
Score = 446 (162.1 bits), Expect = 4.6e-42, P = 4.6e-42
Identities = 106/291 (36%), Positives = 167/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL + A +F N+YIKNL + +DDE+L+ LFS FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEF--TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELK 277
Score = 213 (80.0 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 55/151 (36%), Positives = 82/151 (54%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
DLNG+ G Q E Q ++ G + DK + + +D + + + N+
Sbjct: 255 DLNGKQIYVGRAQKKVER--QTELKHKFGQMKQDKPK-----IEQVPQDRSV-RCQGVNL 306
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
YVKNL + +E L+K F +GTITSA V +G G+SK FGFV F + ++A +AV +NG
Sbjct: 307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 366 RIVATKPLYVALAQRKEERQAHLSNQYMQRM 396
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 205/370 (55%), Positives = 288/370 (77%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LR+SG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL E+ LQ F ++G S VMRD +G+S+ FGF+NFE ++A +AV+
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 369 QRKEERKAIL 378
Score = 410 (149.4 bits), Expect = 4.0e-38, P = 4.0e-38
Identities = 101/307 (32%), Positives = 163/307 (53%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V + R G+ + AQ+A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAIN 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +LN + + R+ L R G NI++KNL +D + L D FS FG
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRQK-REAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFG 215
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
S KV D NGQS+G+GF+ F+ E AQKA++ +NG ++ + +YVG ++ ER E
Sbjct: 216 KTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNE 275
Query: 197 I------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ N+ + N+YVKNL +S ++ L++ F YG ITSA VM + SK
Sbjct: 276 LKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS-HSKG 334
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA-DKF 303
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ + + + F
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSF 394
Query: 304 QGANLYI 310
Q Y+
Sbjct: 395 QQPTSYL 401
Score = 404 (147.3 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 92/281 (32%), Positives = 156/281 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + +S N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D++ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL +D++ L+ LFS FG S KVMRD +G SRG GF+
Sbjct: 184 -------GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFI 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F EEA +A+ MNGK V + LYV AQ++ +R+ L+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELK 277
Score = 224 (83.9 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 66/199 (33%), Positives = 106/199 (53%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 252
DT + +++YV +L TE L + F GTI S V RD +S + ++NF+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
DA RA++ +N F E G+ + + H+ + ++ + G N++IKN
Sbjct: 62 PADAERALDTMN---F---EMIKGQPIR-----IMWSHR-DPGLRRSG---MG-NIFIKN 105
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L++SID++ L FS FGSI S KV+ + G SRG GFV F T E A +A+ MNG ++
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLN 164
Query: 373 SKPLYVALAQRKEDRRARL 391
+ ++V + ++ R A L
Sbjct: 165 DRKVFVGHFKSRQKREAEL 183
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 203/369 (55%), Positives = 283/369 (76%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAFG+ILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF ++ER+ E +F
Sbjct: 132 CDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E ++ L++ F +G S VM D G+S+ FGFVN+ N ++A +AV
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNLDD IDD++L
Sbjct: 251 MNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 430 (156.4 bits), Expect = 2.8e-40, P = 2.8e-40
Identities = 97/281 (34%), Positives = 161/281 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
+++I +L + L++ FS G I+S +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D G S+ +GFV+FE + A RA++ +NG +D++ +VG + + ERELE
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DD++LK++FS FG+ S KVM D SG SRG GFV
Sbjct: 184 -------GAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ EEA +A+ EMNGK V + +YV AQ++ +R+ L+
Sbjct: 237 NYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELK 277
Score = 420 (152.9 bits), Expect = 4.1e-39, P = 4.1e-39
Identities = 105/295 (35%), Positives = 163/295 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA-QEAAR 80
G ++++ +L+ ++ + LYD F+ G ++S +V D R G+ + A A +
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQ 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFS 133
+ +LN + + S R+ L + GA N++IKN + +D K L + FS
Sbjct: 157 TMNGMLLNDRKVF---VGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFS 212
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGN LS KV D +G+S+G+GFV + N E AQKA+ ++NG +N + VYVG ++ ER
Sbjct: 213 AFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E IN+ + N+YVKNL + ++ L+K F YGTITS VM +G G
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALL 364
A+LYI +L + + L + FSP G I S +V RD + S G ++ F P +A RAL
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 365 EMNGKMVVSKPLYVALAQR 383
MN +++ +P+ + +QR
Sbjct: 71 TMNFEVIKGRPIRIMWSQR 89
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 202/369 (54%), Positives = 282/369 (76%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+NF +A RAL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D +G S+GYGFV F+ E+A +AI+ +NGMLLND++V+VGHF ++ER+ E +F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E ++ L++ F +G S VM D G+S+ FGFVN+ N ++A +AV
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNLDD IDD++L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F P+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERKAIL 378
Score = 431 (156.8 bits), Expect = 2.1e-40, P = 2.1e-40
Identities = 99/292 (33%), Positives = 166/292 (56%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ +GAG +++I +L + L++ FS G I+S +V D+ +S Y ++ F
Sbjct: 1 MNATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS NV++KNL ES + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ +GFV+FE + A RA++ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERELE A + N+YIKN + +DD++L+++FS FG+ S KVM D
Sbjct: 176 RRERELEY----------GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV + EEA +A+ EMNGK V + +YV AQ++ +R++ L+
Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELK 277
Score = 425 (154.7 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 105/295 (35%), Positives = 165/295 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAAR 80
G ++++ +L+ ++ + LYD F+ G ++S +V D R G+ + A A +
Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQ 156
Query: 81 ALE--MLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFS 133
+ +LN + + S R+ L + GA N++IKN + +D K L + FS
Sbjct: 157 TMNGMLLNDRKVF---VGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGN LS KV D +G+S+G+GFV + N E AQKA+ ++NG +N + +YVG ++ ER
Sbjct: 213 AFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+E IN+ + N+YVKNL + ++ L+K F YGTITSA VM +G G
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 205/372 (55%), Positives = 283/372 (76%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+ P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + +EE +K F +G ITS + +D DGKSK FGFVNFE+ + A +AV
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 411 AQRKDVRRSQLE 422
Score = 351 (128.6 bits), Expect = 2.2e-31, P = 2.2e-31
Identities = 77/198 (38%), Positives = 118/198 (59%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
K+ NI++KN+D ++ FS FG I S + D +G+SKG+GFV F++ ESA K
Sbjct: 229 KANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVK 288
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINK----------SKF--TNVYVKNLSESTT 215
A+E+LN +N +++YVG +K+ER E+ K +K+ N++VKNL ++
Sbjct: 289 AVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTID 348
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
E L++ F +GTITSA VM D GKSK FGFV F ++A +A+ +N + + K YV
Sbjct: 349 SEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Query: 276 GKAQKKSERELELKHQFE 293
AQ+K R +L+ Q +
Sbjct: 409 ALAQRKDVRRSQLEQQIQ 426
Score = 270 (100.1 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 62/197 (31%), Positives = 114/197 (57%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A+ A A
Sbjct: 138 GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAA 196
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ NI++KN+D ++ FS F
Sbjct: 197 IENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPF 256
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D +G+SKG+GFV F++ ESA KA+E+LN +N +++YVG +K+ER
Sbjct: 257 GKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLE 316
Query: 196 EINKSKFTNVYVKNLSE 212
E+ K ++ V ++ L++
Sbjct: 317 ELKK-QYEAVRLEKLAK 332
Score = 269 (99.8 bits), Expect = 2.7e-21, P = 2.7e-21
Identities = 66/192 (34%), Positives = 103/192 (53%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ N ++ LF+ G++ S+ + +D +S G+G+VNF + + A +A+E
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVE 291
Query: 84 MLNFTPLNGKPIRV---------------MYSH-RDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN +NG+ I V Y R L K N+F+KNLD ID +
Sbjct: 292 ELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEK 351
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F FG I S KV D G+SKG+GFV F E A KAI ++N ++N K +YV
Sbjct: 352 LEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 411
Query: 188 LRKQERDTEINK 199
RK R +++ +
Sbjct: 412 QRKDVRRSQLEQ 423
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 211/372 (56%), Positives = 276/372 (74%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ N +A RAL
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN TP+ GK R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCK
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
V TD SKG+GFV ++ +ESA KAI K+NGM++N ++V+VG F +ER + + KF
Sbjct: 129 VVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERG-QPTEVKF 187
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+ KNLSE + L++ +YG IT+ +M D GKSK FGF NFE+++ A VE
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVEN 247
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
NGK F K Y G+AQKK ERE ELKH FE K+QG NLYIKN+DDSID++KL
Sbjct: 248 ENGKIFHGKPIYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDNDKL 300
Query: 323 KQLFSPFGSITSCKVMRDPSGI-SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+++FS FG+ITS VM+D S+G GFV ++ P+EA+RA+ EMNG+M+ +KPLYVALA
Sbjct: 301 REVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALA 360
Query: 382 QRKEDRRARLQV 393
QRK+ RRA+L++
Sbjct: 361 QRKDIRRAQLEM 372
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 91/287 (31%), Positives = 156/287 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + LYD F+ G ++S +V D S G+G+V++ + A +A
Sbjct: 96 GVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKA 154
Query: 82 LEMLNFTPLNGK-----PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +N +NG+ P + P+ K N+F KNL + + L + +G
Sbjct: 155 IAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFT--NVFFKNLSEDVGPDQLKELLQQYG 212
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I + + D G+SKG+GF F++ E+A+ +E NG + + K +Y G +K ER+ E
Sbjct: 213 EITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Query: 197 IN---KSKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNF 250
+ ++K+ N+Y+KN+ +S + L++ F ++GTITSA+VM+D SK FGFV +
Sbjct: 273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
D+A RAV +NG+ K YV AQ+K R +L+ Q +Q K
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFK 379
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 210/371 (56%), Positives = 278/371 (74%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY YVNF +A RA++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+++DTFS FGNILSCKVA
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVA 152
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D +G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F + +R+ E+ ++ +F
Sbjct: 153 IDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQF 212
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + +E L+K F ++G ITS VM +GKSK FGFV F N ++A AV+A
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQA 271
Query: 263 LNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
L+ + D + +V +AQKKSER ELK + EQ+ E K+QG NLY+KNLD+++DD+
Sbjct: 272 LHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 331
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KMV SKPLYVA+
Sbjct: 332 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 391
Query: 381 AQRKEDRRARL 391
AQRKEDRRA+L
Sbjct: 392 AQRKEDRRAQL 402
Score = 392 (143.0 bits), Expect = 7.3e-36, P = 7.3e-36
Identities = 95/283 (33%), Positives = 155/283 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L ++ L + FSA G +LS +V D S GY +V F A++A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ K + + +RD + +S N+++KNL + + + +F +G I S
Sbjct: 93 MNFEALHGKPMRI----MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D DG SK +GFV+FE + A A++ +NG K+ +VGK Q +++R EL
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG-- 206
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A +F N+Y+KN D + E L++LF+ FG+ITSC+VM G S+G GFV
Sbjct: 207 ------ETAKQF--TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFV 257
Query: 352 AFSTPEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRARLQ 392
AF+ PEEA A+ ++ + L+V AQ+K +R A L+
Sbjct: 258 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELK 300
Score = 337 (123.7 bits), Expect = 8.1e-30, P = 8.1e-30
Identities = 77/198 (38%), Positives = 113/198 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KN + + L F+ FGNI SC+V T + G+SKG+GFV F N E A+ A++ L
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 173 NGMLLN--DKQVYVGHFLRKQERDTEINKS----------KF--TNVYVKNLSESTTEED 218
+ + D +++V +K ER E+ K K+ N+YVKNL E+ ++
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F YG ITSA VM D +G+SK FGFV FE ++A AV +N K K YV A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 279 QKKSERELELKHQFEQNM 296
Q+K +R +L Q+ Q +
Sbjct: 393 QRKEDRRAQLASQYMQRL 410
Score = 241 (89.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 58/186 (31%), Positives = 100/186 (53%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A A
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNA 176
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
++ +N L GK + V + R R+ G N+++KN + + L F+ F
Sbjct: 177 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKF 236
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN--DKQVYVGHFLRKQER 193
GNI SC+V T + G+SKG+GFV F N E A+ A++ L+ + D +++V +K ER
Sbjct: 237 GNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSER 295
Query: 194 DTEINK 199
E+ K
Sbjct: 296 HAELKK 301
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 202/333 (60%), Positives = 263/333 (78%)
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLD
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND+
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 121
Query: 181 QVYVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+V+VG F ++ER+ E+ ++K FTNVY+KN E +E L+ FG++G S VM D
Sbjct: 122 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 241
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEE
Sbjct: 242 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEE 300
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
A++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 301 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 333
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/293 (37%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 52 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 111
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L D F FG
Sbjct: 112 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 170
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 171 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 230
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 231 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 288
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 289 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 341
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 93/243 (38%), Positives = 143/243 (58%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKN 209
+S GY +V F A++A++ +N ++ K V + +RD + KS N+++KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKN 60
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269
L +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329
D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK LF F
Sbjct: 120 DRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKF 169
Query: 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Query: 390 RLQ 392
L+
Sbjct: 230 ELK 232
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 760 (272.6 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 154/283 (54%), Positives = 199/283 (70%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVG F++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +++ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAESAKNAM 248
Query: 261 EALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
+ LNGKK DD + KK E Q ADK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 311 (114.5 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 63/119 (52%), Positives = 84/119 (70%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG Q ++ R LK +F+ E +K QG NLYIKNLDD IDD L++LF PFG+IT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVMRD S+G GFV F++ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 536
Score = 271 (100.5 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 66/179 (36%), Positives = 96/179 (53%)
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
RD + KS N++VKNL +S + L +F +G I S V D GKSK +GFV++E+
Sbjct: 94 RDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYED 153
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ A A+E +NG + K YVG KKSER A + + NLY+KN
Sbjct: 154 EESAKEAIEKVNGVQLGSKNVYVGPFIKKSER--------------ATNDTKFTNLYVKN 199
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
DS+ + L+QLF+P+G ITS V D +R F+ ++ E A A+ +NGK +
Sbjct: 200 FPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 226 (84.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 63/185 (34%), Positives = 97/185 (52%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN Y K L H+ + +++++ N+++KNLD SID++ L
Sbjct: 77 LN---------YTNI--KGQPARLMWSHR-DPSLRKSGT----GNIFVKNLDKSIDNKAL 120
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 383 RKEDR 387
+K +R
Sbjct: 181 KKSER 185
Score = 179 (68.1 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL + + L++ F +GTITSA VMRD +SK FGFV F + ++A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
+AV ++ K + K YVG A+K+ +R L+ +F +
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMH 542
Score = 175 (66.7 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID L + F FG I S KV D QSKG+GFV F ++E A KA+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 511 HLKIINGKPLYVGLAEKREQR 531
Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ +L+ + D L +LF G + S +V RD +S G+G+V F++ +EA +A+
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTE 509
Query: 85 LNFTPLNGKPIRV 97
++ +NGKP+ V
Sbjct: 510 MHLKIINGKPLYV 522
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 760 (272.6 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 154/283 (54%), Positives = 199/283 (70%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVG F++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +++ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAESAKNAM 248
Query: 261 EALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
+ LNGKK DD + KK E Q ADK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 311 (114.5 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 63/119 (52%), Positives = 84/119 (70%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG Q ++ R LK +F+ E +K QG NLYIKNLDD IDD L++LF PFG+IT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVMRD S+G GFV F++ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 536
Score = 271 (100.5 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 66/179 (36%), Positives = 96/179 (53%)
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
RD + KS N++VKNL +S + L +F +G I S V D GKSK +GFV++E+
Sbjct: 94 RDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYED 153
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ A A+E +NG + K YVG KKSER A + + NLY+KN
Sbjct: 154 EESAKEAIEKVNGVQLGSKNVYVGPFIKKSER--------------ATNDTKFTNLYVKN 199
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
DS+ + L+QLF+P+G ITS V D +R F+ ++ E A A+ +NGK +
Sbjct: 200 FPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 226 (84.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 63/185 (34%), Positives = 97/185 (52%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN Y K L H+ + +++++ N+++KNLD SID++ L
Sbjct: 77 LN---------YTNI--KGQPARLMWSHR-DPSLRKSGT----GNIFVKNLDKSIDNKAL 120
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 383 RKEDR 387
+K +R
Sbjct: 181 KKSER 185
Score = 179 (68.1 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL + + L++ F +GTITSA VMRD +SK FGFV F + ++A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
+AV ++ K + K YVG A+K+ +R L+ +F +
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMH 542
Score = 175 (66.7 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID L + F FG I S KV D QSKG+GFV F ++E A KA+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 511 HLKIINGKPLYVGLAEKREQR 531
Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ +L+ + D L +LF G + S +V RD +S G+G+V F++ +EA +A+
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTE 509
Query: 85 LNFTPLNGKPIRV 97
++ +NGKP+ V
Sbjct: 510 MHLKIINGKPLYV 522
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 204/375 (54%), Positives = 274/375 (73%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLY+GDL +V+++ L++ F+ G V+S+RVCRD ++R SLGY YVNF +A R
Sbjct: 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 113
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS FGNILS
Sbjct: 114 ALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G SKGYGFV F+ E SAQ AIEK+NGMLL+DK+VYVG F + +R E+ +S
Sbjct: 174 CKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGES 233
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
K+TNV+VKN E +E L F ++G ITSAVVM D GK K FGFV F + D A +
Sbjct: 234 GLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQ 293
Query: 259 AVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AVE LN + D + V +AQKKSER ELK ++E +E ++QG NLY+KN+++
Sbjct: 294 AVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEED 353
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
++D+ L+ FS FG+ITS KVM D +G S+G GFV F PEEA+ A+ +MN KM+ +KPL
Sbjct: 354 LNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPL 413
Query: 377 YVALAQRKEDRRARL 391
YVALAQRKEDRRA+L
Sbjct: 414 YVALAQRKEDRRAQL 428
Score = 375 (137.1 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 90/283 (31%), Positives = 150/283 (53%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
+++I +L + L + FS G +LS +V D + S GY +V F A++A++
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N +++ + + + +RD ++ N+++KNL + + +F +G I S
Sbjct: 118 MNFEVIHGRPMRI----MWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D +G SK +GFV+FE A A+E +NG DK+ YVGK Q +++R EL
Sbjct: 174 CKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELG-- 231
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E+ K+ N+++KN + +D EKL +FS FG ITS VM D G +G GFV
Sbjct: 232 ------ESGLKY--TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
Query: 352 AFSTPEEASRALLEMNGKMVVSKP--LYVALAQRKEDRRARLQ 392
AF+ + A +A+ ++N ++ L V AQ+K +R A L+
Sbjct: 284 AFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELK 326
Score = 338 (124.0 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 82/214 (38%), Positives = 119/214 (55%)
Query: 100 SHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
+ R L +SG N+F+KN + +D + L FS FG I S V TD G+ KG+GFV
Sbjct: 224 AQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
Query: 158 QFDNEESAQKAIEKLNGMLLN--DKQVYVGHFLRKQERDTEINKSKF------------- 202
F ++++A +A+EKLN +L D ++ V +K ER E+ K K+
Sbjct: 284 AFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAEL-KRKYEALKQERVQRYQG 342
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
N+YVKN+ E ++ L+ F +GTITSA VM D +G+SK FGFV FE ++A AV
Sbjct: 343 VNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTD 402
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+N K K YV AQ+K +R +L Q+ Q +
Sbjct: 403 MNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 436
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 196/332 (59%), Positives = 257/332 (77%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
++ FSPFG+ITS KVM + G S+G GFV FS
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFS 341
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 105/291 (36%), Positives = 166/291 (57%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 100/248 (40%), Positives = 145/248 (58%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNF 250
K FGFV F
Sbjct: 333 KGFGFVCF 340
Score = 126 (49.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 196/316 (62%), Positives = 249/316 (78%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 164
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 165 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 223
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E +D
Sbjct: 224 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 283
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 284 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 343
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 344 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 402
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 403 LYVALAQRKEERKAHL 418
Score = 410 (149.4 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 95/292 (32%), Positives = 162/292 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A + A
Sbjct: 137 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 196
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D ++L + FS FG
Sbjct: 197 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 255
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 256 KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 315
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 316 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 374
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 375 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 426
Score = 398 (145.2 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 88/229 (38%), Positives = 141/229 (61%)
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
+A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +F
Sbjct: 104 TAERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 159
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + E
Sbjct: 160 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 218
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL + A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG
Sbjct: 219 REAELGAK--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG 268
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 269 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 317
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
Identities = 191/316 (60%), Positives = 252/316 (79%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
++K FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 299 LYVALAQRKEERQAHL 314
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 108/293 (36%), Positives = 163/293 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + G+ + A E A
Sbjct: 33 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 92
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + F FG
Sbjct: 93 -KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG 151
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE
Sbjct: 152 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 211
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 212 L-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSK 269
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 270 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 387 (141.3 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 88/228 (38%), Positives = 137/228 (60%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 1 AERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 56
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ER
Sbjct: 57 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 115
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D SG
Sbjct: 116 EAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 165
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 166 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 731 (262.4 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 142/251 (56%), Positives = 193/251 (76%)
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK 201
V D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 156
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 216
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE
Sbjct: 217 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 276
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVAL
Sbjct: 277 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 335
Query: 381 AQRKEDRRARL 391
AQRKE+R+A L
Sbjct: 336 AQRKEERQAHL 346
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 107/252 (42%), Positives = 149/252 (59%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIK 117
S GYG+V+F + A RA+E +N LN + + V + R + GA N++IK
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
N + +D + L D F FG LS KV TD +G+SKG+GFV F+ E AQKA++++NG L
Sbjct: 165 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 224
Query: 178 NDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFG 224
N KQ+YVG +K ER TE+ K KF N+YVKNL + +E L+K F
Sbjct: 225 NGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 283
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K YV AQ+K ER
Sbjct: 284 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 342
Query: 285 ELELKHQFEQNM 296
+ L +Q+ Q M
Sbjct: 343 QAHLTNQYMQRM 354
Score = 304 (112.1 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 69/159 (43%), Positives = 100/159 (62%)
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 154
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
A +F N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F
Sbjct: 155 ------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 245
Score = 283 (104.7 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 51/86 (59%), Positives = 67/86 (77%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSG 110
+NF + GKP+R+M+S RDPSLRKSG
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 272 (100.8 bits), Expect = 8.6e-22, P = 8.6e-22
Identities = 70/204 (34%), Positives = 113/204 (55%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F ++A +A++
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVD 217
Query: 84 MLNFTPLNGKPIRVMYSH----RDPSLRKSGA-----------G-NIFIKNLDKAIDHKA 127
+N LNGK I V + R L++ G N+++KNLD ID +
Sbjct: 218 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 277
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 278 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 188 LRKQERDTEINKSKFTNVYVKNLS 211
RK+ER + TN Y++ ++
Sbjct: 337 QRKEERQAHL-----TNQYMQRMA 355
Score = 131 (51.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVC 394
P +A RAL MN ++ KP+ + +QR R VC
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVC 100
Score = 102 (41.0 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
A++A++ +N ++ K V + +RD + KS
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKS 96
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 188/342 (54%), Positives = 255/342 (74%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+ +
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA+
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 347
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 102/291 (35%), Positives = 163/291 (56%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 192/309 (62%), Positives = 245/309 (79%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 61 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 240 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 299 RKEERKAHL 307
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 95/292 (32%), Positives = 160/292 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + + + + A A
Sbjct: 26 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIE 85
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFG 136
+M + K + R + GA N++IKN + +D + L + FS FG
Sbjct: 86 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFG 144
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E
Sbjct: 145 KTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 204
Query: 197 INK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 205 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKG 263
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 264 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 315
Score = 375 (137.1 bits), Expect = 3.2e-34, P = 3.2e-34
Identities = 82/201 (40%), Positives = 126/201 (62%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS NV++KNL +S + L +F +G I S V+ D +G SK + FV+FE
Sbjct: 17 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 75
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A +A+E +NG +D++ +VG+ + + ERE EL + A +F N+YIK
Sbjct: 76 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--TNVYIK 125
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDE L++LFS FG S KVMRD SG S+G GFV++ E+A++A+ EMNGK +
Sbjct: 126 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 185
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
K ++V AQ+K +R+A L+
Sbjct: 186 SGKSIFVGRAQKKVERQAELK 206
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 189/369 (51%), Positives = 262/369 (71%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++ RAL
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 101 DELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCK 160
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 161 VAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 220
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF + A AV
Sbjct: 221 NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D +DD+
Sbjct: 281 EEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE-EASRALLEMNGKMVVSKPLYVA 379
KL++LF P+G+ITS KVMRD + + +TPE E + + N K + A
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVET-------ATPESETKESANKENEKAAEGEKEPAA 393
Query: 380 LAQRKEDRR 388
+ KE+++
Sbjct: 394 EEKEKEEKK 402
Score = 442 (160.7 bits), Expect = 4.2e-41, P = 4.2e-41
Identities = 105/311 (33%), Positives = 170/311 (54%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG +DK+ +VG K +R+ +FE+ MK F N+YIKN+D ++DE+
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQ----SKFEE-MKA---NF--TNIYIKNIDPEVEDEE 238
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 382 QRKEDRRARLQ 392
Q+K +R L+
Sbjct: 299 QKKHEREEELR 309
Score = 274 (101.5 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 59/184 (32%), Positives = 105/184 (57%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 128 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNA 186
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ NI+IKN+D ++ + F F
Sbjct: 187 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKF 246
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A+E++N + +++YVG +K ER+
Sbjct: 247 GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306
Query: 196 EINK 199
E+ K
Sbjct: 307 ELRK 310
Score = 170 (64.9 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
K + P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 407 KPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 466
Query: 396 LQCR 399
Q R
Sbjct: 467 -QAR 469
Score = 109 (43.4 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
Query: 298 E 298
+
Sbjct: 474 Q 474
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 189/361 (52%), Positives = 257/361 (71%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +A +AL+
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG ILS KV
Sbjct: 129 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 188
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
+D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+ S+F
Sbjct: 189 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEF 247
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ + A +AVE
Sbjct: 248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 307
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD+IDDEKL
Sbjct: 308 MNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKL 367
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKPL +ALAQ
Sbjct: 368 RNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Query: 383 R 383
R
Sbjct: 427 R 427
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 99/281 (35%), Positives = 160/281 (56%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 244 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 92/278 (33%), Positives = 159/278 (57%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LY+ F+ G+++S +V D + S GY +V+F N A RA
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRA 211
Query: 82 LEMLNFTPLNGKPIRV-MYSHR---DPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
+E +N L G + V + +R + LR + N++IKN +D + L D FS +
Sbjct: 212 IEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 271
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV FD+ E+A+KA+E++NG +N + ++VG +K ER
Sbjct: 272 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K F +Y+KNL ++ +E L+ F +G+I+ VM++ +G+S
Sbjct: 332 EL-KQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQS 389
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
K FG + F + +DA +A+ +NG+ K + AQ+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 228 (85.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 69/205 (33%), Positives = 109/205 (53%)
Query: 193 RDTEIN---KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFV 248
+D E+N K + ++YV +L TE+ L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-AN 307
NF DA +A++ +N FD + GK+ ++ + Q ++A + G N
Sbjct: 115 NFLQLADAQKALDTMN---FDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGN 157
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
++IKNLD SID++ L + FS FG I S KVM D G S+G FV F A RA+ EMN
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQ 392
GK++ ++V + ++DR A L+
Sbjct: 217 GKLLKGCKVFVGRFKNRKDREAELR 241
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 189/361 (52%), Positives = 257/361 (71%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +A +AL+
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG ILS KV
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
+D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+ S+F
Sbjct: 131 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEF 189
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ + A +AVE
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD+IDDEKL
Sbjct: 250 MNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKL 309
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKPL +ALAQ
Sbjct: 310 RNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Query: 383 R 383
R
Sbjct: 369 R 369
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 99/281 (35%), Positives = 160/281 (56%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 276
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 92/278 (33%), Positives = 159/278 (57%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LY+ F+ G+++S +V D + S GY +V+F N A RA
Sbjct: 96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRA 153
Query: 82 LEMLNFTPLNGKPIRV-MYSHR---DPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
+E +N L G + V + +R + LR + N++IKN +D + L D FS +
Sbjct: 154 IEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 213
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV FD+ E+A+KA+E++NG +N + ++VG +K ER
Sbjct: 214 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K F +Y+KNL ++ +E L+ F +G+I+ VM++ +G+S
Sbjct: 274 EL-KQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQS 331
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
K FG + F + +DA +A+ +NG+ K + AQ+
Sbjct: 332 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 222 (83.2 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 66/196 (33%), Positives = 104/196 (53%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDS 316
+A++ +N FD + GK+ ++ + Q ++A + G N++IKNLD S
Sbjct: 66 KALDTMN---FDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNVFIKNLDKS 108
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
ID++ L + FS FG I S KVM D G S+G FV F A RA+ EMNGK++ +
Sbjct: 109 IDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 167
Query: 377 YVALAQRKEDRRARLQ 392
+V + ++DR A L+
Sbjct: 168 FVGRFKNRKDREAELR 183
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 177/317 (55%), Positives = 238/317 (75%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+ E+ +F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE ++A +AV
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNLDDSIDD+KL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 323 KQLFSPFGSITSCKVMR 339
++ FSP+G ITS K R
Sbjct: 311 RKEFSPYGVITSAKKRR 327
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 99/292 (33%), Positives = 161/292 (55%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 78/230 (33%), Positives = 125/230 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D S G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ ER
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
E+ K +F N+YVKNL +S ++ L+K F YG ITSA
Sbjct: 275 EL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Score = 159 (61.0 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 44/135 (32%), Positives = 74/135 (54%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L +V + L DLF+Q G+++SV+V RD ++ S +G+VNF +EA +A+
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 84 MLNFTPLNGKPI-------RVMYSH---------RDPSLRKSGAGNIFIKNLDKAIDHKA 127
+N ++G+ + RV + + LR+ N+++KNLD +ID
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 128 LHDTFSAFGNILSCK 142
L FS +G I S K
Sbjct: 310 LRKEFSPYGVITSAK 324
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 184/365 (50%), Positives = 255/365 (69%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT+ L+ FN +G V+S+R+CRDL + RSLGYGYVNF +A +
Sbjct: 7 YRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQK 66
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG I+S
Sbjct: 67 ALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMS 126
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
KV TD G SKGYGFV + ++ +A +AIE++NG LL D ++V F +++R+ E+ +
Sbjct: 127 SKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREK 185
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
++FTNVY+KN + +E L+ F +YG S VM+D GKSK FGFV+F++ A
Sbjct: 186 PAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKN 245
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE Q A LYIKNLDD+ID
Sbjct: 246 AVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTID 305
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE L++ FS FGSI KVM++ +G S+G G + F +PE A++A+ EMNG+++ SKPL +
Sbjct: 306 DETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNI 364
Query: 379 ALAQR 383
AL Q+
Sbjct: 365 ALGQK 369
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 102/286 (35%), Positives = 165/286 (57%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQ 166
K A ++++ +L + + L F+ G +LS ++ DL + +S GYG+V F AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
KA+E +N L+ K + L +RD + KS NV++KNL +S + L + F +
Sbjct: 66 KALETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S+ VM D +G SK +GFV++++ A RA+E +NGK D +V + + + +RE
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
EL+ K A +F N+YIKN D +DDE L+ +FS +G S KVM+D SG S+
Sbjct: 181 ELRE------KPA--EF--TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
GFV+F + + A A+ +MNG+ + + ++V AQ+K +R+A L+
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELK 276
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 178/371 (47%), Positives = 258/371 (69%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL +VT+ LYD F + + SVR+C+D S+ RSL YGY NF + Q+A A+
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N + LNGK IRVM+S R P R++G GN+F+KNL +++ + L D F FGNI+SCK
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VAT +G+S+GYGFVQF+ E++A AI+ LN ++ DK++YVG F++K +R + K+
Sbjct: 143 VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP--EEKY 200
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+Y+KNL +E+ L++ F E+G I S + +D + + + FVNF+N +DA RA E
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG KF K YVG+AQKK+ERE L+ QF++ +E + +N+Y+KN++ ++ +E+L
Sbjct: 261 VNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS G+ITS K+M D G S+G GFV FSTPEEA A+ +G+M KPLYVA+AQ
Sbjct: 321 RKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 383 RKEDRRARLQV 393
+KEDR+ +LQV
Sbjct: 381 KKEDRKMQLQV 391
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 110/301 (36%), Positives = 166/301 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L +VT++ L D+F + G +VS +V L +S GYG+V F A A
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAA 168
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
++ LN T + K I V D + N+++KNLD + L + F+ FG I+
Sbjct: 169 IQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV 228
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S +A D N +GY FV FDN E A++A E +NG K +YVG +K ER+ + +
Sbjct: 229 SLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLRE 288
Query: 200 ------------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+K +N+YVKN++ + TEE+L+K F + GTITS +M D GKSK FGF
Sbjct: 289 QFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGF 348
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V F ++A AV+ +G+ F K YV AQKK +R+++L+ QF N EA A+
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFG-NRVEARKSSSSAS 407
Query: 308 L 308
+
Sbjct: 408 V 408
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 189/364 (51%), Positives = 250/364 (68%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV
Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSK 201
D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++
Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNV+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 257
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDE 320
L+GK D K YVG+AQKK ER EL+ +FE+ +KE + + G +YIKNLD++I+DE
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS-RPPGVPIYIKNLDETINDE 316
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L
Sbjct: 317 KLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 381 AQRK 384
Q +
Sbjct: 376 GQAR 379
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 94/280 (33%), Positives = 154/280 (55%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKL 172
+++ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+N K L + D + KS N+++KNL +S L F +G I S
Sbjct: 80 NFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR- 193
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV
Sbjct: 194 --------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 245
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ T E A +A+L+++GK + K LYV AQ+K +R A L+
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELR 285
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 80/280 (28%), Positives = 145/280 (51%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ ++ + L+ LF+ G ++S +V C D ++ GY YV+F + A R
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANR 160
Query: 81 ALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+ +N LN + + V R +R ++ N+F+KN+ ID + L + F
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFC 220
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G S KV D +G+SKG+GFV+++ E+AQKA+ L+G ++ K +YVG +K ER
Sbjct: 221 EYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Query: 194 DTEINKSKFTNVYVKNLSE--------STTEEDL--QKSFGEYGTI--TSAVVMRDGDGK 241
E+ + +F + +K S +E + +K E+ + S + G+
Sbjct: 281 LAELRR-RFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQ 339
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
K FG V F + ++A +AV+ +NG+ K +V Q +
Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 114 (45.2 bits), Expect = 0.00094, P = 0.00094
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR-GSGFV 351
E N K+ A LY+ +LD + ++ L + F P G + ++ RDP S G G+V
Sbjct: 5 EPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 64
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
F P +A AL MN ++ KP + +Q +DR
Sbjct: 65 NFRFPADAEWALNTMNFDLINGKPFRLMWSQ-PDDR 99
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 188/364 (51%), Positives = 248/364 (68%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFG+ILSCKV
Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVV 138
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSK 201
D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +K+
Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNV+VKN + ++ L++ F EYG S V+RD GKSK FGFV +E + A +AV
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVL 257
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDE 320
L+GK D K YVG+AQKK ER EL+ +FE+ +KE + + G +YIKNLD++IDDE
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS-RPPGVPIYIKNLDETIDDE 316
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ FS FGSI+ KVM + G +G G + FS+ EEA++A+ EMNG++V SKPL V L
Sbjct: 317 KLKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTL 375
Query: 381 AQRK 384
Q +
Sbjct: 376 GQAR 379
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 94/280 (33%), Positives = 155/280 (55%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKL 172
+++ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+N K L + D + KS N+++KNL +S L F +G+I S
Sbjct: 80 NFDLINGKPFR----LMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSC 135
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR- 193
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
DK N+++KN D +DD+KLK+LFS +G S KV+RD SG S+G GFV
Sbjct: 194 --------DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVR 245
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ T E A +A+L+++GK + K LYV AQ+K +R A L+
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELR 285
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 81/280 (28%), Positives = 143/280 (51%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ ++ + L+ LF+ G ++S +V C D ++ GY YV+F + A R
Sbjct: 104 GIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSK---GYAYVHFDSLAAANR 160
Query: 81 ALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+ +N LN + + V R +R K+ N+F+KN +D L + FS
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFS 220
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G S KV D +G+SKG+GFV+++ E+AQKA+ L+G ++ K +YVG +K ER
Sbjct: 221 EYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Query: 194 DTEINKSKFTNVYVKNLSE--------STTEE--DLQKSFGEYGTI--TSAVVMRDGDGK 241
E+ + +F + +K S +E D +K E+ + S + G+
Sbjct: 281 LAELRR-RFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQ 339
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
K FG + F + ++A +AV+ +NG+ K V Q +
Sbjct: 340 GKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 215 (80.7 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 60/185 (32%), Positives = 104/185 (56%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V + ++ D +L +LF++ G SV+V RD S+ +S G+G+V + + A +A+
Sbjct: 199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVL 257
Query: 84 MLNFTPLNGKPIRVMYSHRD----PSLR----------KSGAGN--IFIKNLDKAIDHKA 127
L+ ++GK + V + + LR KS I+IKNLD+ ID +
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEK 317
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK--QVYVG 185
L + FS+FG+I KV ++ GQ KG+G + F + E A KA++++NG ++ K QV +G
Sbjct: 318 LKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLG 376
Query: 186 HFLRK 190
R+
Sbjct: 377 QARRR 381
Score = 114 (45.2 bits), Expect = 0.00094, P = 0.00094
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR-GSGFV 351
E N K+ A LY+ +LD + ++ L + F P G + ++ RDP S G G+V
Sbjct: 5 EPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 64
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
F P +A AL MN ++ KP + +Q +DR
Sbjct: 65 NFRFPADAEWALNTMNFDLINGKPFRLMWSQ-PDDR 99
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 173/281 (61%), Positives = 222/281 (79%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +E+A KAIEK+
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
NGMLLND++V+VG F ++ER+ E+ K+K FTNVY+KN E +E L++ F ++G
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S VMRD +GKSK FGFV++E +DA +AVE +NGK+ K +VG+AQKK ER+ ELK
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GF
Sbjct: 181 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 239
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
V FS+PEEA++A+ EMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 280
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 95/289 (32%), Positives = 161/289 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++++ +L+ ++ + LYD F+ G ++S +V D + + + + A + A +M
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE-KM 60
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ K + R + GA N++IKN + +D ++L + FS FG L
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E+ +
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 200 ----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK FGF
Sbjct: 181 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 239
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
V F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 288
Score = 367 (134.2 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 79/189 (41%), Positives = 121/189 (64%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV++KNL +S + L +F +G I S V+ D +G SK + FV+FE + A +A+E +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG +D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE LK
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--TNVYIKNFGEEVDDESLK 110
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LFS FG S KVMRDP+G S+G GFV++ E+A++A+ EMNGK + K ++V AQ+
Sbjct: 111 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 170
Query: 384 KEDRRARLQ 392
K +R+A L+
Sbjct: 171 KVERQAELK 179
Score = 277 (102.6 bits), Expect = 6.8e-23, P = 6.8e-23
Identities = 71/204 (34%), Positives = 116/204 (56%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V D L +LF+Q G+ +SV+V RD +S G+G+V++ ++A +A+E
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 151
Query: 84 MLNFTPLNGKPIRVMYSH----RDPSLRKSGA-----------G-NIFIKNLDKAIDHKA 127
+N ++GK I V + R L++ G N++IKNLD ID +
Sbjct: 152 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 211
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 212 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 270
Query: 188 LRKQERDTEINKSKFTNVYVKNLS 211
RK+ER K+ TN Y++ ++
Sbjct: 271 QRKEER-----KAHLTNQYMQRVA 289
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 187/363 (51%), Positives = 244/363 (67%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV
Sbjct: 79 MNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSK 201
D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++
Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNV+VKN + +E L+K F EYG S V+RD GKSK FGFV +E + A +AV
Sbjct: 198 FTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVL 257
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GK D K VG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEK
Sbjct: 258 ELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEK 317
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK+ FS FGSI+ KVM + G +G G V FS+ EEAS+A+ EMNG++V SK L+V L
Sbjct: 318 LKEEFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLG 376
Query: 382 QRK 384
Q +
Sbjct: 377 QAR 379
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 94/280 (33%), Positives = 153/280 (54%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKL 172
+++ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+N K L + D + KS N+++KNL +S L F +G I S
Sbjct: 80 NFDLINGKPFR----LMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR- 193
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
D+ N+++KN D IDDEKLK+LFS +G S KV+RD +G S+G GFV
Sbjct: 194 --------DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVR 245
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ T E A +A+LE++GK + K L V AQ+K +R A L+
Sbjct: 246 YETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELR 285
Score = 274 (101.5 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 79/280 (28%), Positives = 143/280 (51%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ ++ + L+ LF+ G ++S +V C D ++ GY YV+F + A R
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANR 160
Query: 81 ALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+ +N LN + + V R +R ++ N+F+KN ID + L FS
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFS 220
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G S KV D G+SKG+GFV+++ E+AQKA+ +L+G ++ K + VG +K ER
Sbjct: 221 EYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIER 280
Query: 194 DTEINKSKFTNVYVKNLSE--------STTEEDL--QKSFGEYGTI--TSAVVMRDGDGK 241
E+ + +F + +K+ + +E + +K E+ S + G+
Sbjct: 281 LAELRR-RFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQ 339
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
K FG V F + ++A++AV +NG+ K +V Q +
Sbjct: 340 GKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 187/364 (51%), Positives = 246/364 (67%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV
Sbjct: 79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSK 201
D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++
Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNV+VKN +E L++ F YG S V+RD GKSK FGFV +E + A +AV
Sbjct: 198 FTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 257
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDE 320
L+GK + K YVG+AQKK ER EL+ +FE+ +KE + + G +YIKNLD++IDDE
Sbjct: 258 DLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKS-RPPGVPIYIKNLDETIDDE 316
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ FS FGSI+ KVM + G +G G V FS+ E+A++A+ EMNG+ V SKPL+V L
Sbjct: 317 KLKEEFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTL 375
Query: 381 AQRK 384
Q +
Sbjct: 376 GQAR 379
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 92/280 (32%), Positives = 154/280 (55%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKL 172
+++ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+N K L + D + KS N+++KNL +S L F +G I S
Sbjct: 80 NFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR- 193
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
D+ N+++KN + +DDEKLK++FS +G S KV+RD SG S+G GFV
Sbjct: 194 --------DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVR 245
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ T E A +A+L+++GK + K LYV AQ+K +R A L+
Sbjct: 246 YETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELR 285
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 83/280 (29%), Positives = 145/280 (51%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ ++ + L+ LF+ G ++S +V C D ++ GY YV+F + A R
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANR 160
Query: 81 ALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+ +N LN + + V R +R ++ N+F+KN +D + L + FS
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFS 220
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G S KV D +G+SKG+GFV+++ E+AQKA+ L+G +N K +YVG +K ER
Sbjct: 221 GYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIER 280
Query: 194 DTEINKSKFTNVYVKNLSE--------STTEE--DLQKSFGEYGTI--TSAVVMRDGDGK 241
E+ + +F + +K S +E D +K E+ + S + G+
Sbjct: 281 LAELRR-RFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQ 339
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
K FG V F + +DA +AV+ +NG+ K +V Q +
Sbjct: 340 GKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 114 (45.2 bits), Expect = 0.00094, P = 0.00094
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR-GSGFV 351
E N K+ A LY+ +LD + ++ L + F P G + ++ RDP S G G+V
Sbjct: 5 EPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 64
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
F P +A AL MN ++ KP + +Q +DR
Sbjct: 65 NFRFPADAEWALNTMNFDLINGKPFRLMWSQ-PDDR 99
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 173/313 (55%), Positives = 234/313 (74%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E+LN+ L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KVA D +G SKGYGFVQF ++ S A NG L+ ++ ++V F+ + + D KS+
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWD----KSR 116
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKNL E+ T+ DL++ FGE+G ITSAVVM+DG+GKS+ FGFVNFE ++ A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDD 319
E +NG D+KE +VG+AQ+K+ R +LK +FE + + +G NLY+KNLDDS+D+
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL++LFS FG+ITSCKVM +GIS+G GFV FST EEAS+A+L+MNGKMV +KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 380 LAQRKEDRRARLQ 392
LAQ KE + LQ
Sbjct: 297 LAQCKEQHKLHLQ 309
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 103/286 (36%), Positives = 157/286 (54%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSDLSVYTA 87
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
N T + + I V + R + N+++KNL + L F FG I S
Sbjct: 88 CNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 147
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
V D G+S+ +GFV F+ E+A AIEK+NG+++++K+++VG RK R TE K+
Sbjct: 148 AVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-TEDLKA 206
Query: 201 KFT--------------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
KF N+YVKNL +S L++ F E+GTITS VM +G SK G
Sbjct: 207 KFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVG 266
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
FV F S++A++A+ +NGK +K YV AQ K + +L L+ QF
Sbjct: 267 FVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 171/375 (45%), Positives = 242/375 (64%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
FG SLYVGDL +VT+ L D F+ VVSV +CR+ T +S+ Y Y+NF + A+
Sbjct: 20 FG--SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRK---SGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A+ LN + L GK +R+M+S RD + R+ +G N+++KNLD +I L F FG+
Sbjct: 78 AMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGS 137
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV + NGQSKG+GFVQFD E+SA A L+G ++ K+++V F+ K ER
Sbjct: 138 ILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMA 196
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
TNVYVKNL E+ T++ L F +YGT++S VVMRDG G+S+ FGFVNF N ++A
Sbjct: 197 GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAK 256
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+A+E+L G + K+ +VGKA KK ER LK +F N A + +NLY+KNL +S+
Sbjct: 257 KAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFI-AKPNMRWSNLYVKNLSESM 315
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
++ +L+++F +G I S KVM +G S+G GFV FS EE+ +A +NG +V KP+
Sbjct: 316 NETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 378 VALAQRKEDRRARLQ 392
V +A+RKEDR RLQ
Sbjct: 376 VRVAERKEDRIKRLQ 390
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 106/293 (36%), Positives = 165/293 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +LYV +L++++T S L +F G ++S +V + +S G+G+V F Q A A
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSA 167
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSG---AGNIFIKNLDKAIDHKALHDTFSAFGN 137
L+ + + GK + V + ++D +G + N+++KNL + + LH FS +G
Sbjct: 168 RSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT 227
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
+ S V D G+S+G+GFV F N E+A+KA+E L G+ L K+++VG L+K ER E+
Sbjct: 228 VSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDER-REM 286
Query: 198 NKSKFT------------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
K KF+ N+YVKNLSES E L++ FG YG I SA VM +G+SK F
Sbjct: 287 LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGF 346
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
GFV F N +++ +A LNG D K V A++K +R L+ F+ ++
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQ 399
Score = 268 (99.4 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 71/193 (36%), Positives = 107/193 (55%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDA 256
+ S+F ++YV +LS TE+DL F + S + R+ GKS C+ ++NF++ A
Sbjct: 16 HSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSA 75
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+ A+ LN D K GKA + + +L ++ + F ANLY+KNLD S
Sbjct: 76 SNAMTRLNHS--DLK----GKAMRIMWSQRDLAYR-----RRTRTGF--ANLYVKNLDSS 122
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
I L+++F PFGSI SCKV+ + +G S+G GFV F T + A A ++G MV K L
Sbjct: 123 ITSSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL 181
Query: 377 YVALAQRKEDRRA 389
+VA K++R A
Sbjct: 182 FVAKFINKDERAA 194
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 135/249 (54%), Positives = 185/249 (74%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+ +
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKK 267
AV+ +NGK+
Sbjct: 247 AVDEMNGKE 255
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 94/268 (35%), Positives = 149/268 (55%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGK 369
SG S+G GFV+F E+A +A+ EMNGK
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 171 (65.3 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+++KNLD SI+++ L S FG+I SC V+ D +G S+G GFV F T E A RA+ +M
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 367 NGKMVVSKPLYVALAQRKEDRRARL 391
NG ++ + ++V + +++R A L
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAEL 183
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 141/251 (56%), Positives = 190/251 (75%)
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK 201
V D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ ++K
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KN E +E L+ FG S VM D GKSK FGFV+FE +DA +AV
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 117
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE
Sbjct: 118 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 177
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVAL
Sbjct: 178 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 236
Query: 381 AQRKEDRRARL 391
AQRKE+R+A L
Sbjct: 237 AQRKEERQAHL 247
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 106/252 (42%), Positives = 148/252 (58%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIK 117
S GYG+V+F + A RA+E +N LN + + V + R + GA N++IK
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 68
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
N + +D + L D F G LS KV TD +G+SKG+GFV F+ E AQKA++++NG L
Sbjct: 69 NFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 125
Query: 178 NDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFG 224
N KQ+YVG +K ER TE+ K KF N+YVKNL + +E L+K F
Sbjct: 126 NGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 184
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K YV AQ+K ER
Sbjct: 185 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 243
Query: 285 ELELKHQFEQNM 296
+ L +Q+ Q M
Sbjct: 244 QAHLTNQYMQRM 255
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 68/159 (42%), Positives = 100/159 (62%)
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 58
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
A +F N+YIKN + +DDE+LK LF P S+ KVM D SG S+G GFV+F
Sbjct: 59 ------AKEF--TNVYIKNFGEDMDDERLKDLFGPALSV---KVMTDESGKSKGFGFVSF 107
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 108 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 146
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 70/204 (34%), Positives = 112/204 (54%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + ++ D +L DLF G +SV+V D S + S G+G+V+F ++A +A++
Sbjct: 63 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVD 118
Query: 84 MLNFTPLNGKPIRVMYSH----RDPSLRKSGA-----------G-NIFIKNLDKAIDHKA 127
+N LNGK I V + R L++ G N+++KNLD ID +
Sbjct: 119 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 178
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 179 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 237
Query: 188 LRKQERDTEINKSKFTNVYVKNLS 211
RK+ER + TN Y++ ++
Sbjct: 238 QRKEERQAHL-----TNQYMQRMA 256
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 153/375 (40%), Positives = 230/375 (61%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL A+V + L +LF+++G+ + S+ VCRD +T RSLGY YVNF N +A RA
Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERA 243
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN+T ++GKP R+M+S+RDP+ RK+ GNIF+KNL+K +D+ L+DTFS+FGNILSC
Sbjct: 244 LDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV + G SKGYG+V F+ +SA+KAIEK+NG L+ K + V F+ K ER NK
Sbjct: 304 KVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENK-- 360
Query: 202 FTNVYVKNLSESTTEEDLQKSFGE-YGTITSAVVMRDGDGKSKCFGFVNFENSDDA---- 256
V+ +N ES T E LQ+ +G I S ++ D +GKSK G V F+N +DA
Sbjct: 361 ---VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 257 ----ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
A + ++G + K +K + E+ E K +L+I N
Sbjct: 418 TESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-FTEYRKKTTDLSLFINN 476
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
+D+SID + +K+ F+ G+I K+++D + ++G GF++FS +EA +AL +NG
Sbjct: 477 IDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFG 536
Query: 373 SKPLYVALAQRKEDR 387
SK + V+ + + ++
Sbjct: 537 SKQIQVSFSNKDNNQ 551
Score = 204 (76.9 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 59/190 (31%), Positives = 95/190 (50%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYG--TITSAVVMRDGDG-KSKCFGFVNFENSDDAA 257
+ T++YV +L+ E L + F + G I S V RD + +S + +VNF N+ DA
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RA++ LN K + + K K N+++KNL+ +
Sbjct: 242 RALDTLNYTLVHGKP-------------CRIMWSYRDPTKR---KTNVGNIFVKNLEKGV 285
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+ L FS FG+I SCKV + GIS+G G+V F T + A +A+ ++NG +++ KP+
Sbjct: 286 DNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN 344
Query: 378 VALAQRKEDR 387
V K +R
Sbjct: 345 VERFVSKVER 354
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 116/211 (54%), Positives = 160/211 (75%)
Query: 183 YVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F ++ER+ E+ ++K FTNVY+KN E +E L++ FG++G S VM D G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA+
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 179
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEERQAHL 210
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 89/197 (45%), Positives = 123/197 (62%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN + +D + L + F FG LS KV TD +G+SKG+GFV F+ E AQKA++++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG LN KQ+YVG +K ER TE+ K KF N+YVKNL + +E L
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 142
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
+K F +GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K YV AQ
Sbjct: 143 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Query: 280 KKSERELELKHQFEQNM 296
+K ER+ L +Q+ Q M
Sbjct: 202 RKEERQAHLTNQYMQRM 218
Score = 268 (99.4 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 69/204 (33%), Positives = 113/204 (55%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + ++ D +L +LF + G +SV+V D S + S G+G+V+F ++A +A++
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVD 81
Query: 84 MLNFTPLNGKPIRVMYSH----RDPSLRKSGA-----------G-NIFIKNLDKAIDHKA 127
+N LNGK I V + R L++ G N+++KNLD ID +
Sbjct: 82 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 141
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 142 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 200
Query: 188 LRKQERDTEINKSKFTNVYVKNLS 211
RK+ER + TN Y++ ++
Sbjct: 201 QRKEERQAHL-----TNQYMQRMA 219
Score = 228 (85.3 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
+VG+ + + ERE EL + A +F N+YIKN + +DDE+LK+LF FG
Sbjct: 1 FVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPAL 50
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 51 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 109
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 116/211 (54%), Positives = 159/211 (75%)
Query: 183 YVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F ++ER+ E+ ++K FTNVY+KN E +E L+ FG++G S VM D G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA+
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 180
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEERQAHL 211
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 90/197 (45%), Positives = 123/197 (62%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN + +D + L D F FG LS KV TD +G+SKG+GFV F+ E AQKA++++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG LN KQ+YVG +K ER TE+ K KF N+YVKNL + +E L
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 143
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
+K F +GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K YV AQ
Sbjct: 144 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Query: 280 KKSERELELKHQFEQNM 296
+K ER+ L +Q+ Q M
Sbjct: 203 RKEERQAHLTNQYMQRM 219
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 70/204 (34%), Positives = 113/204 (55%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F ++A +A++
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVD 82
Query: 84 MLNFTPLNGKPIRVMYSH----RDPSLRKSGA-----------G-NIFIKNLDKAIDHKA 127
+N LNGK I V + R L++ G N+++KNLD ID +
Sbjct: 83 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 142
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 143 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 201
Query: 188 LRKQERDTEINKSKFTNVYVKNLS 211
RK+ER + TN Y++ ++
Sbjct: 202 QRKEERQAHL-----TNQYMQRMA 220
Score = 226 (84.6 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 52/119 (43%), Positives = 73/119 (61%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
+VG+ + + ERE EL + A +F N+YIKN + +DDE+LK LF FG
Sbjct: 2 FVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPAL 51
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 52 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 110
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 108/195 (55%), Positives = 141/195 (72%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 232 (86.7 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 53/176 (30%), Positives = 95/176 (53%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 199 (75.1 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 62/188 (32%), Positives = 97/188 (51%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELK-HQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN FD V K R + + Q + +++++ N++IKNL +ID++
Sbjct: 63 LN---FD-----VIKG-----RPVRIMWSQRDPSLRKSGV----GNVFIKNLGKTIDNKA 105
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 382 QRKEDRRA 389
+ ++R A
Sbjct: 165 KSHKEREA 172
Score = 110 (43.8 bits), Expect = 0.00056, P = 0.00056
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 108/195 (55%), Positives = 141/195 (72%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 232 (86.7 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 53/176 (30%), Positives = 95/176 (53%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 199 (75.1 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 62/188 (32%), Positives = 97/188 (51%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELK-HQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN FD V K R + + Q + +++++ N++IKNL +ID++
Sbjct: 63 LN---FD-----VIKG-----RPVRIMWSQRDPSLRKSGV----GNVFIKNLGKTIDNKA 105
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 382 QRKEDRRA 389
+ ++R A
Sbjct: 165 KSHKEREA 172
Score = 110 (43.8 bits), Expect = 0.00056, P = 0.00056
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 108/195 (55%), Positives = 141/195 (72%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 228 (85.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 52/176 (29%), Positives = 94/176 (53%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 198 (74.8 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 62/188 (32%), Positives = 97/188 (51%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELK-HQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN FD V K R + + Q + +++++ N++IKNL +ID++
Sbjct: 63 LN---FD-----VIKG-----RPVRIMWSQRDPSLRKSGV----GNVFIKNLGKTIDNKA 105
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRF 164
Query: 382 QRKEDRRA 389
+ ++R A
Sbjct: 165 KSHKEREA 172
Score = 110 (43.8 bits), Expect = 0.00056, P = 0.00056
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
Score = 108 (43.1 bits), Expect = 0.00098, P = 0.00098
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + LY++F+ G ++S +V D + GYG+V+F + A RA
Sbjct: 88 GVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERA 145
Query: 82 LEMLNFTPLNGKPIRV--MYSHRD 103
++++N LN + I V SH++
Sbjct: 146 IDVMNGMFLNYRKIFVGRFKSHKE 169
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 108/195 (55%), Positives = 141/195 (72%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 230 (86.0 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 53/176 (30%), Positives = 95/176 (53%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 197 (74.4 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 62/188 (32%), Positives = 97/188 (51%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELK-HQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN FD V K R + + Q + +++++ N++IKNL +ID++
Sbjct: 63 LN---FD-----VIKG-----RPVRIMWSQRDPSLRKSGV----GNVFIKNLGKTIDNKA 105
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 382 QRKEDRRA 389
+ ++R A
Sbjct: 165 KSHKEREA 172
Score = 108 (43.1 bits), Expect = 0.00098, P = 0.00098
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 104/174 (59%), Positives = 133/174 (76%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL VT+S LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RAL
Sbjct: 1 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 60
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E +NF +NG+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCK
Sbjct: 61 ETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
VA D G KGYGFV F +ESA++AI+ LNGM LN ++++VG F +ER+ E
Sbjct: 121 VACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 241 (89.9 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 63/209 (30%), Positives = 108/209 (51%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 63 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G K +GFV+F+ + A RA++ALNG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDE 320
Q+ +AD K+ DD DDE
Sbjct: 178 ARQST--SAD--------FKDFDDDSDDE 196
Score = 192 (72.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 58/187 (31%), Positives = 93/187 (49%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 63 MNFDVINGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 106
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+FS FG+I SCKV D G +G GFV F E A RA+ +NG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 165
Query: 383 RKEDRRA 389
++R A
Sbjct: 166 SHKEREA 172
Score = 111 (44.1 bits), Expect = 0.00043, P = 0.00043
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN ++ +P+ + +QR R
Sbjct: 62 TMNFDVINGRPVRIMWSQRDPSLR 85
Score = 108 (43.1 bits), Expect = 0.00098, P = 0.00098
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + LY++F+ G ++S +V D + GYG+V+F + A RA
Sbjct: 88 GVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERA 145
Query: 82 LEMLNFTPLNGKPIRV--MYSHRD 103
++ LN LN + I V SH++
Sbjct: 146 IDALNGMFLNYRKIFVGRFKSHKE 169
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 106/217 (48%), Positives = 149/217 (68%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
+NG+ LN++QVYVG F +ER E+ +++ FTNV+VKN+ + +E L++ F EYG
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
S V+RD GKSK FGFV +E + A +AV L+GK D K YVG+AQKK ER EL
Sbjct: 61 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 120
Query: 289 KHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
+ +FE+ +KE + + G +YIKNLD++I+DEKLK+ FS FGSI+ KVM + G +G
Sbjct: 121 RRRFERLRLKEKS-RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKG 178
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
G V FS+ EEA++A+ EMNG++V SKPL+V L Q +
Sbjct: 179 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 66/183 (36%), Positives = 109/183 (59%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+F+KN+ ID + L + F +G S KV D +G+SKG+GFV+++ E+AQKA+ L
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEIN----------KSKFTNV--YVKNLSESTTEEDLQ 220
+G ++ K +YVG +K ER E+ KS+ V Y+KNL E+ +E L+
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 155
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV--GKA 278
+ F +G+I+ A VM + G+ K FG V F + ++A +AV+ +NG+ K +V G+A
Sbjct: 156 EEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 214
Query: 279 QKK 281
+++
Sbjct: 215 RRR 217
Score = 243 (90.6 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 52/130 (40%), Positives = 82/130 (63%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG + ++++ YVG+ + ER E++ + D+ N+++KN+ D IDDEKL
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKL 51
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+LF +G S KV+RD SG S+G GFV + T E A +A+L+++GK + K LYV AQ
Sbjct: 52 KELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 111
Query: 383 RKEDRRARLQ 392
+K +R A L+
Sbjct: 112 KKIERLAELR 121
Score = 208 (78.3 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 57/177 (32%), Positives = 100/177 (56%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V ++ ++ D +L +LF + G SV+V RD S + S G+G+V + + A +A+
Sbjct: 35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 93
Query: 84 MLNFTPLNGKPIRVMYSHRD----PSLR----------KSGAGN--IFIKNLDKAIDHKA 127
L+ ++GK + V + + LR KS I+IKNLD+ I+ +
Sbjct: 94 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 153
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L + FS+FG+I KV ++ GQ KG+G V F + E A KA++++NG ++ K ++V
Sbjct: 154 LKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 93/191 (48%), Positives = 139/191 (72%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
+G I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIE
Sbjct: 112 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 171
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
K+NGML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG IT
Sbjct: 172 KVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW-YVGKAQKKSERELELK 289
S +M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+ E+
Sbjct: 231 SHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 290
Query: 290 HQFEQNMKEAA 300
+ E+ ++ A
Sbjct: 291 RKLEERKRQKA 301
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 65/188 (34%), Positives = 110/188 (58%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 282 KAERQQEI 289
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 61/179 (34%), Positives = 102/179 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA-LEM 84
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F +++EAARA +E
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHF-DSEEAARAAIEK 172
Query: 85 LNFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N N + + V+ RD K+ N+++KNL + + L + F +G I S
Sbjct: 173 VNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSH 232
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
K+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 233 KLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 416 (151.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 83/154 (53%), Positives = 112/154 (72%)
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK 201
V D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E +DA +AV
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
E +NGK+ K +VG+AQKK ER+ ELK +FEQ
Sbjct: 162 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 315 (115.9 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 68/160 (42%), Positives = 105/160 (65%)
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 42 IVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK- 99
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV+
Sbjct: 100 -------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 150
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 190
Score = 248 (92.4 bits), Expect = 5.0e-21, P = 5.0e-21
Identities = 55/145 (37%), Positives = 85/145 (58%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIK 117
S GY +V+F + A +A+E +N LN + + V + R + GA N++IK
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 109
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
N + +D ++L + FS FG LS KV D NG+SKG+GFV ++ E A KA+E++NG +
Sbjct: 110 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 169
Query: 178 NDKQVYVGHFLRKQERDTEINKSKF 202
+ K ++VG +K ER E+ K KF
Sbjct: 170 SGKIIFVGRAQKKVERQAEL-KRKF 193
Score = 125 (49.1 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V D L +LF+Q G+ +SV+V RD +S G+G+V++ ++A +A+E
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 162
Query: 84 MLNFTPLNGKPIRV 97
+N ++GK I V
Sbjct: 163 EMNGKEISGKIIFV 176
Score = 44 (20.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 135 FGNILSCK 142
FGNILSCK
Sbjct: 2 FGNILSCK 9
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 80/118 (67%), Positives = 99/118 (83%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCK
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Score = 149 (57.5 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 33/120 (27%), Positives = 63/120 (52%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 47/136 (34%), Positives = 69/136 (50%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD + GK + S+R+ L+ K N++IKNLD SID++
Sbjct: 72 MN---FDVIK---GKPIRIMWSQRDPSLR------------KSGVGNVFIKNLDKSIDNK 113
Query: 321 KLKQLFSPFGSITSCK 336
L FS FG+I SCK
Sbjct: 114 ALYDTFSAFGNILSCK 129
Score = 131 (51.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 79/118 (66%), Positives = 98/118 (83%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCK
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITS 231
+F +G I S
Sbjct: 118 TFSAFGNILS 127
Score = 139 (54.0 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 48/136 (35%), Positives = 69/136 (50%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD + GK + S+R+ L+ K N++IKNLD SID++
Sbjct: 72 MN---FDVIK---GKPVRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNK 113
Query: 321 KLKQLFSPFGSITSCK 336
L FS FG+I SCK
Sbjct: 114 ALYDTFSAFGNILSCK 129
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 85/134 (63%), Positives = 108/134 (80%)
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 378 VALAQRKEDRRARL 391
VALAQRKE+R+A L
Sbjct: 120 VALAQRKEERKAHL 133
Score = 246 (91.7 bits), Expect = 7.0e-19, P = 7.0e-19
Identities = 54/142 (38%), Positives = 87/142 (61%)
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK----------SKF--TNVYVKNLSEST 214
KA+E++NG ++ K ++VG +K ER E+ + S++ N+Y+KNL ++
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
+E L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K Y
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 275 VGKAQKKSERELELKHQFEQNM 296
V AQ+K ER+ L +Q+ Q +
Sbjct: 120 VALAQRKEERKAHLTNQYMQRV 141
Score = 195 (73.7 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 109 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 142
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 107
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
+N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 108 MNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRVAGMRALPANAILNQF 156
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 77/112 (68%), Positives = 93/112 (83%)
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+D
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 61
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
TFSAFGNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V
Sbjct: 62 TFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 159 (61.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G FV F T E A +A+ +M
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 102
Query: 367 NGKMV 371
NG ++
Sbjct: 103 NGMLL 107
Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 35/114 (30%), Positives = 63/114 (55%)
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
F A++A++ +N ++ K + + +RD + KS NV++KNL +S +
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 58
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
L +F +G I S V+ D +G SK + FV+FE + A +A+E +NG +D++
Sbjct: 59 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRK 111
Score = 105 (42.0 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D S GY +V+F + A +A
Sbjct: 41 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKA 98
Query: 82 LEMLNFTPLNGKPI 95
+E +N LN + +
Sbjct: 99 IEKMNGMLLNDRKV 112
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 74/107 (69%), Positives = 89/107 (83%)
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLD
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
K+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
Score = 157 (60.3 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKN 209
+S GY +V F A++A++ +N ++ K V + +RD + KS N+++KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKN 60
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
L +S + L +F +G I S V+ D +G SK +GFV+FE + A R
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
Score = 157 (60.3 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 48/123 (39%), Positives = 68/123 (55%)
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKE 298
+S + +VNF+ DA RA++ +N FD + GK + S+R+ L+
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMN---FDVIK---GKPVRIMWSQRDPSLR--------- 49
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
K N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E
Sbjct: 50 ---KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEA 105
Query: 359 ASR 361
A R
Sbjct: 106 AER 108
Score = 93 (37.8 bits), Expect = 0.00078, P = 0.00078
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
G ++++ +L+ ++ + LYD F+ G ++S +V D S GYG+V+F QEAA
Sbjct: 52 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET-QEAA 106
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 267 (99.0 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 58/154 (37%), Positives = 87/154 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L +++ K + D FS FG I++
Sbjct: 78 INTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 199 (75.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 48/160 (30%), Positives = 80/160 (50%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L S T++D++ F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRSMTQKDVEDMFSRFGR 131
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHK 171
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E D NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
Score = 133 (51.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 299 AMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 131 (51.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 37/112 (33%), Positives = 49/112 (43%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + P SG IFI NL + D L F FG + + K
Sbjct: 216 QRFRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 123 (48.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 32/104 (30%), Positives = 55/104 (52%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L S+ + ++ +FS FG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALAQR-KEDRRARL--QVC 394
EA A+ NG S+P+ V A +++ L Q+C
Sbjct: 157 RSEAEEAITNFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLC 200
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKILQVSF 319
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 266 (98.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 58/154 (37%), Positives = 86/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 78 ISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 201 (75.8 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
Identities = 47/160 (29%), Positives = 82/160 (51%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 78 ISTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 140 (54.3 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E D NL + L ++ E+L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR 97
Score = 134 (52.2 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 133 (51.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 299 AMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 129 (50.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 32/81 (39%), Positives = 39/81 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IFI NL + D L F FG + + KV D N + KG+GFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +FS FG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALA 381
EA A+ NG S+P+ V A
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKILQVSF 319
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 266 (98.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 58/154 (37%), Positives = 86/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 78 ISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 201 (75.8 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
Identities = 47/160 (29%), Positives = 82/160 (51%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 78 ISTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 140 (54.3 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E D NL + L ++ E+L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR 97
Score = 134 (52.2 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 133 (51.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 299 AMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 129 (50.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 32/81 (39%), Positives = 39/81 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IFI NL + D L F FG + + KV D N + KG+GFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +FS FG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALA 381
EA A+ NG S+P+ V A
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 266 (98.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 58/154 (37%), Positives = 86/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 86 INTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 143
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 144 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 199 (75.1 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 47/160 (29%), Positives = 81/160 (50%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 86 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGR 139
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 140 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 179
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E D NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 9 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 68
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 69 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 105
Score = 133 (51.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 247 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 306
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 307 AMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 131 (51.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 87
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 88 TLNGLRLQSKTIKVSYARPSSE 109
Score = 129 (50.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 128 (50.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 37/112 (33%), Positives = 49/112 (43%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + P SG IFI NL + D L F FG + + K
Sbjct: 224 QRFRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 282
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 283 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 118 (46.6 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +FS FG I + +V+ D + G+SRG F+ F
Sbjct: 105 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 164
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALA 381
EA A+ NG S+P+ V A
Sbjct: 165 RSEAEEAITSFNGHKPPGSSEPITVKFA 192
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 314 NGYRLGDKILQVSF 327
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 266 (98.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 58/154 (37%), Positives = 86/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 105 INTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 162
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 163 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 199 (75.1 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 47/160 (29%), Positives = 81/160 (50%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 105 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGR 158
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 159 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 198
Score = 133 (51.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 266 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 325
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 326 AMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 131 (51.2 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSE 128
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKEAADKFQG-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E G NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 28 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 87
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 88 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 124
Score = 129 (50.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 37/112 (33%), Positives = 49/112 (43%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + P SG IFI NL + D L F FG + + K
Sbjct: 243 QRFRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 301
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 302 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 118 (46.6 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +FS FG I + +V+ D + G+SRG F+ F
Sbjct: 124 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 183
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALA 381
EA A+ NG S+P+ V A
Sbjct: 184 RSEAEEAITSFNGHKPPGSSEPITVKFA 211
Score = 116 (45.9 bits), Expect = 0.00049, P = 0.00049
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 333 NGYRLGDKILQVSF 346
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 266 (98.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 58/154 (37%), Positives = 86/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 78 INTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 199 (75.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 47/160 (29%), Positives = 81/160 (50%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 133 (51.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 299 AMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 131 (51.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKEAADKFQG-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E G NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
Score = 129 (50.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 37/112 (33%), Positives = 49/112 (43%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + P SG IFI NL + D L F FG + + K
Sbjct: 216 QRFRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +FS FG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALA 381
EA A+ NG S+P+ V A
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 264 (98.0 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 57/154 (37%), Positives = 87/154 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ NA++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V ++ PS N++I L + + K + D F FG+I++
Sbjct: 78 INTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 204 (76.9 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 52/170 (30%), Positives = 82/170 (48%)
Query: 101 HRDPSLRKS-GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQ 158
H D R G N+ + L + + L FS+ G + S K+ D + G S GYGFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ N + A++AI LNG+ L K + V F R K N+Y+ L + T++D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVS-FARPSSETI-----KDANLYISGLPRTMTQKD 121
Query: 219 LQKSFGEYG-TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
++ F +G I S V++ G S+ F+ F+ +A A+ + NG K
Sbjct: 122 VEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 135 (52.6 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ N+ DA RA+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSE 101
Score = 134 (52.2 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
+++ NL + E L + FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + DK V KS +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 132 (51.5 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPE 357
A+ G ++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + E
Sbjct: 237 ASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDR 387
EA+ A+ +NG + K L V+ K +
Sbjct: 297 EAAMAIASLNGYRLGDKTLQVSFKTSKSHK 326
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/97 (30%), Positives = 54/97 (55%)
Query: 288 LKHQFEQNMKEAA-DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M + D NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR 97
Score = 130 (50.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 38/112 (33%), Positives = 50/112 (44%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + S S SG IFI NL + D L F FG + + K
Sbjct: 216 QRFRFSPMGVDHMSSISSVNVASSASSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 326
Score = 124 (48.7 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +F PFG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALAQRKEDRR--ARL-QVC 394
EA A+ NG S+P+ V A + A L Q+C
Sbjct: 157 RSEAEEAIASFNGHKPPGSSEPITVKFAANPNQSKNMALLSQIC 200
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKTLQVSF 319
Score = 37 (18.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARAL 82
VCRD R +L Y+ + Q+ R+L
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSL 39
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 265 (98.3 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 57/154 (37%), Positives = 86/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G++ S ++ RD SLGYG+VN+ A++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 78 INTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 201 (75.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 48/160 (30%), Positives = 82/160 (51%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + + L FS+ G I S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSPFGR 131
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 140 (54.3 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 34/97 (35%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E D NL + L ++ E+L+ LFS G I S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
Score = 135 (52.6 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ F G I SA ++RD G S +GFVN+ + DA RA+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 132 (51.5 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEAS A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
+ A+ +LNG + DK V KS +
Sbjct: 299 SMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 37/112 (33%), Positives = 49/112 (43%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + P SG IFI NL + D L F FG + + K
Sbjct: 216 QRFRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +FSPFG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALA 381
EA A+ NG S+P+ V A
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 113 (44.8 bits), Expect = 0.00091, P = 0.00091
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EA+ A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 264 (98.0 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 58/154 (37%), Positives = 86/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 78 INTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 199 (75.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 47/160 (29%), Positives = 81/160 (50%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRNMTQKDVEDMFSRFGR 131
Query: 229 ITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKK 267
I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 288 LKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E D NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
Score = 133 (51.9 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV N ++A
Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 299 AMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 131 (51.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 37/112 (33%), Positives = 49/112 (43%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + P SG IFI NL + D L F FG + + K
Sbjct: 216 QRFRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +FS FG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALA 381
EA A+ NG S+P+ V A
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 260 (96.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 229 (85.7 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
Identities = 52/157 (33%), Positives = 88/157 (56%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 134 (52.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 132 (51.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 131 (51.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 130 (50.8 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 325 NGYRLGDRVLQVSFKTNK 342
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 325 NGYRLGDRVLQVSF 338
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 260 (96.6 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 57/154 (37%), Positives = 85/154 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ NA++A RA
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN L K I+V + PS N++I L + + K + D F FG I++
Sbjct: 78 INTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINS 135
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+V D G S+G F++FD A++AI NG
Sbjct: 136 RVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 198 (74.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 51/170 (30%), Positives = 82/170 (48%)
Query: 101 HRDPSLRKS-GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQ 158
H D R G N+ + L + + L FS+ G + S K+ D + G S GYGFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ N + A++AI LNG+ L K + V E K N+Y+ L + T++D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVSVARPSSE------SIKDANLYISGLPRTMTQKD 121
Query: 219 LQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKK 267
++ F +G I ++ V+ D G S+ F+ F+ +A A+ + NG K
Sbjct: 122 VEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 136 (52.9 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ N+ DA RA+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
LNG + K V A+ SE
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSE 101
Score = 131 (51.2 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
+++ NL + E L + FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + DK V KS +
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 129 (50.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPE 357
A+ G ++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + E
Sbjct: 237 ASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDR 387
EA+ A+ +NG + K L V K +
Sbjct: 297 EAAMAIASLNGYRLGDKTLQVFFKTSKSHK 326
Score = 127 (49.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 31/72 (43%), Positives = 37/72 (51%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IFI NL + D L F FG + + KV D N + KG+GFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 173 NGMLLNDKQVYV 184
NG L DK + V
Sbjct: 306 NGYRLGDKTLQV 317
Score = 124 (48.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ +++ + ANLYI L ++ + ++ +F PFG I + +V+ D + G+SRG F+ F
Sbjct: 97 RPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDK 156
Query: 356 PEEASRALLEMNGKMVV--SKPLYVALAQRKEDRR--ARL-QVC 394
EA A+ NG S+P+ V A + A L Q+C
Sbjct: 157 RSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLC 200
Score = 124 (48.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359
D NL + L ++ ++L+ LFS G + S K++RD +G S G GFV + ++A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 360 SRALLEMNGKMVVSKPLYVALAQ 382
RA+ +NG + SK + V++A+
Sbjct: 75 ERAINTLNGLRLQSKTIKVSVAR 97
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 306 NGYRLGDKTLQVFF 319
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARAL 82
VCRD R +L Y+ + Q+ R+L
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSL 39
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 68/107 (63%), Positives = 87/107 (81%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DT
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 118
Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 32/118 (27%), Positives = 60/118 (50%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDL 219
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKAL 115
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD + GK + S+R+ L+ K N++IKNLD SID++
Sbjct: 72 MN---FDVIK---GKPVRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNK 113
Query: 321 KL 322
L
Sbjct: 114 AL 115
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 257 (95.5 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 104 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 161
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 162 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 227 (85.0 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 105 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 158
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 159 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 195
Score = 131 (51.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 121 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 180
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 181 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 217
Score = 130 (50.8 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 37 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 96
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 97 DAEKAINTLNGLRLQTKTIKVSYAR 121
Score = 125 (49.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 104 TLNGLRLQTKTIKVSYARPSS 124
Score = 121 (47.7 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 330 NGYRLGDRVLQVSFKTNK 347
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 264 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 323
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 324 MAIASLNGYRLGDRVLQVSFKTNKAHK 350
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 330 NGYRLGDRVLQVSF 343
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 252 (93.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 55/152 (36%), Positives = 85/152 (55%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N++ +L LF+ +G+V S ++ RD SLGYG+VN+ N +A RA+
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N++I L K + K + + F +G I++ +V
Sbjct: 94 TLNGLRLQSKTIKVSYAR--PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRV 151
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D +G S+G F++FD A+ AI+ LNG
Sbjct: 152 LVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 216 (81.1 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 50/157 (31%), Positives = 85/157 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + L FS+ G + S K+ D + G S GYGFV + N A++AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LNG+ L K + V + + D+ K N+Y+ L ++ T++D+++ FG YG I +
Sbjct: 95 LNGLRLQSKTIKVSY--ARPSSDS----IKDANLYISGLPKTMTQKDVEEMFGRYGRIIN 148
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+ V+ D G S+ F+ F+ +A A++ LNG+K
Sbjct: 149 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQK 185
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 33/102 (32%), Positives = 56/102 (54%)
Query: 287 ELKHQFEQNMK-EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGI 344
++ + +E +M E D NL + L ++ ++L+ LFS G + S K++RD +G
Sbjct: 16 DMSNGYEDHMADELIDS--KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGH 73
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
S G GFV + P +A RA+ +NG + SK + V+ A+ D
Sbjct: 74 SLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSD 115
Score = 132 (51.5 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSD 254
E+ SK TN+ V L ++ ++++L+ F G + SA ++RD G S +GFVN+ N +
Sbjct: 28 ELIDSK-TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPN 86
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSE 283
DA RA+ LNG + K V A+ S+
Sbjct: 87 DAERAISTLNGLRLQSKTIKVSYARPSSD 115
Score = 129 (50.5 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N S +++ NL + E L + FG +G +T+ V+RD K K FGFV + ++A
Sbjct: 253 NSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEA 312
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
A A+ +LNG + DK V KS +
Sbjct: 313 AMAIASLNGYRLGDKILQVSFKTSKSHK 340
Score = 126 (49.4 bits), Expect = 3.9e-33, Sum P(2) = 3.9e-33
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
++I NL D+ L Q+F PFG++T+ KV+RD + +G GFV + EEA+ A+ +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K L V+ K +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 37/112 (33%), Positives = 50/112 (44%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P++ + M P SG IFI NL + D L F FG + + K
Sbjct: 230 QRFRFSPMSVDHMSGMSGVNVPGNSSSG-WCIFIYNLGQDADEGILWQMFGPFGAVTNVK 288
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV + E A AI LNG L DK + V K +
Sbjct: 289 VIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQVSFKTSKSHK 340
Score = 122 (48.0 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++D + ANLYI L ++ + ++++F +G I + +V+ D SG+SRG F+ F
Sbjct: 111 RPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDK 170
Query: 356 PEEASRALLEMNGK 369
EA A+ ++NG+
Sbjct: 171 RAEAEDAIKDLNGQ 184
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 260 (96.6 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 229 (85.7 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 52/157 (33%), Positives = 88/157 (56%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 132 (51.5 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 131 (51.2 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 130 (50.8 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 338 NGYRLGDRVLQVSF 351
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 260 (96.6 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 229 (85.7 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 52/157 (33%), Positives = 88/157 (56%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 132 (51.5 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 131 (51.2 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 130 (50.8 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 339 NGYRLGDRVLQVSFKTNK 356
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 339 NGYRLGDRVLQVSF 352
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 247 (92.0 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 59/165 (35%), Positives = 89/165 (53%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-----------LSTRRSLGYGYV 70
G T+L V L N+T +L LF+ +G+V S ++ RD LS SLGYG+V
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFV 77
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
N+ NA++A RA+ LN L K I+V ++ PS N++I L + + K + D
Sbjct: 78 NYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVED 135
Query: 131 TFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
F FG+I++ +V D G S+G F++FD A++AI NG
Sbjct: 136 MFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 182 (69.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 52/181 (28%), Positives = 81/181 (44%)
Query: 101 HRDPSLRKS-GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL------------ 147
H D R G N+ + L + + L FS+ G + S K+ D
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLS 67
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYV 207
G S GYGFV + N + A++AI LNG+ L K + V F R K N+Y+
Sbjct: 68 KGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS-FARPSSESI-----KDANLYI 121
Query: 208 KNLSESTTEEDLQKSFGEYG-TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
L + T++D++ F +G I S V++ G S+ F+ F+ +A A+ + NG
Sbjct: 122 SGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 181
Query: 267 K 267
K
Sbjct: 182 K 182
Score = 160 (61.4 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA--- 259
TN+ V L ++ T+++L+ F G + SA ++RD K GF +S +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-----KVAGFEMRSSSLSKGHSLGY 74
Query: 260 --VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
V LN K D E + + +K F + +++ + ANLYI L ++
Sbjct: 75 GFVNYLNAK---DAERAINTLNGLRLQSKTIKVSFA---RPSSESIKDANLYISGLPRTM 128
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVV--SK 374
+ ++ +F PFG I + +V+ D + G+SRG F+ F EA A+ NG S+
Sbjct: 129 TQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 188
Query: 375 PLYVALAQR-KEDRRARL--QVC 394
P+ V A +++ L Q+C
Sbjct: 189 PITVKFAANPNQNKNVALLSQIC 211
Score = 135 (52.6 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL + E L + FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + DK V KS +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 131 (51.2 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPE 357
A+ G +++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + E
Sbjct: 248 ASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 307
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDR 387
EA+ A+ +NG + K L V+ K +
Sbjct: 308 EAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 128 (50.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 37/112 (33%), Positives = 50/112 (44%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ F+P+ + + S S SG IF+ NL + D L F FG + + K
Sbjct: 227 QRFRFSPMGVDHMSSISSVNVASSATSG-WCIFVYNLGQDADEGILWQMFGPFGAVTNVK 285
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
V D N + KG+GFV N E A AI LNG L DK + V K +
Sbjct: 286 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 317 NGYRLGDKTLQVSF 330
Score = 37 (18.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARAL 82
VCRD R +L Y+ + Q+ R+L
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSL 39
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 265 (98.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 56/152 (36%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ ++A +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS FG I++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRI 185
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 186 LVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 239 (89.2 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 90/336 (26%), Positives = 153/336 (45%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN---FTPLNGKPIRVMYSHRDPSLR 107
++VR+C S RS + ++ AA ++ N T NG P V + P
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPSCTSSNG-PNSVSNTCTSPVEM 59
Query: 108 KSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
+G+ N+ + L + + + L F + G I SCK+ D + GQS GYGFV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
+ A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQL 173
Query: 223 FGEYGTI-TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW-----YVG 276
F ++G I TS +++ G S+ GF+ F+ +A A++ LNG+K +
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 277 KAQKKSERELELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF--GSIT 333
+KS + L L H ++ N + Q A + LD+ ++ + FSP +T
Sbjct: 234 NPSQKSSQAL-LSHLYQSPNRRYPGPLAQQAQRF--RLDNLLNMAYGVKRFSPMTIDGVT 290
Query: 334 SCKVMRDPSGISRG-SGFVAFSTPEEASRALLEMNG 368
S + P+ G FV P+ L +M G
Sbjct: 291 SLAGINLPAHAGTGWCIFVYNLAPDADENVLWQMFG 326
Score = 164 (62.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 53/192 (27%), Positives = 96/192 (50%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+ V L ++ T+E+L+ FG G I S ++RD + G+ F N + A +A
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYMEPKDAEKA 125
Query: 263 LNGKKFDDKEWYVG-KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N G + Q K+ +K + + ++ + ANLY+ L ++ ++
Sbjct: 126 INTLN--------GLRLQTKT-----IKVSYA---RPSSASIRDANLYVSGLPKTMTQKE 169
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS FG I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 170 LEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITV 229
Query: 379 ALAQRKEDRRAR 390
A + ++
Sbjct: 230 KFANNPSQKSSQ 241
Score = 130 (50.8 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 121 (47.7 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 301 AGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 360
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 361 VAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 114 (45.2 bits), Expect = 0.00096, P = 0.00096
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + ++ L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 367 NGYRLGDRVLQVSF 380
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 260 (96.6 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 185
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 186 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 231 (86.4 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
Identities = 65/225 (28%), Positives = 111/225 (49%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK---PIRV---MYSHRDP 104
++VR+C S RS + ++ AA ++ N N P + S D
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDS 60
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 163
+ N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + +
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++ F
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLF 174
Query: 224 GEYGTI-TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+YG I TS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 175 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 136 (52.9 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 264 NGKKFDDKEWYVGKAQK 280
NG + D+ V K K
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
Score = 134 (52.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 131 (51.2 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 145 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 204
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 205 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 130 (50.8 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 62 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 118
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 119 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 148
Score = 118 (46.6 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 367 NGKMVVSKPLYV 378
NG + + L V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 173 NGMLLNDKQVYV 184
NG L D+ + V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 86 NFTPLNGKPIRVMYSHR 102
N L + ++V +++
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 259 (96.2 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 54/152 (35%), Positives = 87/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++
Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 219 (82.2 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + F + G+I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ +++++++ F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++++QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGK--MVVSKPLYVALAQRKEDR 387
EA A+ +NG+ + ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 130 (50.8 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 129 (50.5 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG K K V A+ S
Sbjct: 99 TLNGLKLQTKTIKVSYARPSS 119
Score = 127 (49.8 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKKFDDKEWYVG-KAQKK 281
NG + ++ V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+GAG IF+ NL D L F FG + + KV D + KG+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 346 NGYRLGERVLQVSF 359
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 259 (96.2 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 54/152 (35%), Positives = 87/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++
Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 219 (82.2 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + F + G+I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ +++++++ F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++++QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGK--MVVSKPLYVALAQRKEDR 387
EA A+ +NG+ + ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 130 (50.8 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 129 (50.5 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG K K V A+ S
Sbjct: 99 TLNGLKLQTKTIKVSYARPSS 119
Score = 127 (49.8 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKKFDDKEWYVG-KAQKK 281
NG + ++ V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+GAG IF+ NL D L F FG + + KV D + KG+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 346 NGYRLGERVLQVSF 359
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 259 (96.2 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 54/152 (35%), Positives = 87/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++
Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 219 (82.2 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + F + G+I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ +++++++ F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++++QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGK--MVVSKPLYVALAQRKEDR 387
EA A+ +NG+ + ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 130 (50.8 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 129 (50.5 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG K K V A+ S
Sbjct: 99 TLNGLKLQTKTIKVSYARPSS 119
Score = 127 (49.8 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKKFDDKEWYVG-KAQKK 281
NG + ++ V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A
Sbjct: 282 GGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341
Query: 82 LEMLNFTPLNGKPIRVMY 99
+ LN L + ++V +
Sbjct: 342 IASLNGYRLGERVLQVSF 359
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 31/90 (34%), Positives = 42/90 (46%)
Query: 106 LRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEE 163
+R G G IF+ NL D L F FG + + KV D + KG+GFV N +
Sbjct: 277 VRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 336
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
A AI LNG L ++ + V KQ +
Sbjct: 337 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 259 (96.2 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 54/152 (35%), Positives = 87/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++
Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 219 (82.2 bits), Expect = 9.1e-26, Sum P(2) = 9.1e-26
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + F + G+I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ +++++++ F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++++QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGK--MVVSKPLYVALAQRKEDR 387
EA A+ +NG+ + ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 130 (50.8 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + + L V+ K+ +
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
Score = 129 (50.5 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG K K V A+ S
Sbjct: 99 TLNGLKLQTKTIKVSYARPSS 119
Score = 127 (49.8 bits), Expect = 7.5e-32, Sum P(2) = 7.5e-32
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 264 NGKKFDDKEWYVG-KAQKK 281
NG + ++ V K K+
Sbjct: 347 NGYRLGERVLQVSFKTSKQ 365
Score = 123 (48.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+GAG IF+ NL D L F FG + + KV D + KG+GFV N + A
Sbjct: 281 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 340
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L ++ + V KQ +
Sbjct: 341 MAIASLNGYRLGERVLQVSFKTSKQHK 367
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 347 NGYRLGERVLQVSF 360
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 70/105 (66%), Positives = 87/105 (82%)
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+
Sbjct: 2 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 60
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 61 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 105
Score = 214 (80.4 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
KQER I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK FGFV
Sbjct: 11 KQER---ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 66
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 67 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 113
Score = 195 (73.7 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 81 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 114
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 79
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
+N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 80 MNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRVAGMRALPANAILNQF 128
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 260 (96.6 bits), Expect = 7.2e-32, Sum P(2) = 7.2e-32
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 185 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 229 (85.7 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 52/157 (33%), Positives = 88/157 (56%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 128 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 182 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 134 (52.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 132 (51.5 bits), Expect = 7.2e-32, Sum P(2) = 7.2e-32
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 131 (51.2 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 144 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 203
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 204 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
Score = 130 (50.8 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 61 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 147
Score = 122 (48.0 bits), Expect = 8.1e-31, Sum P(2) = 8.1e-31
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 366 NGYRLGDRVLQVSFKTNK 383
Score = 119 (46.9 bits), Expect = 0.00027, P = 0.00027
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 366 NGYRLGDRVLQVSF 379
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 66/121 (54%), Positives = 90/121 (74%)
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 336 K 336
K
Sbjct: 122 K 122
Score = 253 (94.1 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 57/118 (48%), Positives = 73/118 (61%)
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L D F FG LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG
Sbjct: 5 LKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 64
Query: 188 LRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
+K ER TE+ K KF N+YVKNL + +E L+K F +GTITSA
Sbjct: 65 QKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Score = 177 (67.4 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 379 ALAQRKEDRRARLQ 392
AQ+K +R+ L+
Sbjct: 62 GRAQKKVERQTELK 75
Score = 150 (57.9 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 43/123 (34%), Positives = 63/123 (51%)
Query: 37 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96
D +L DLF + G +SV+V D S + S G+G+V+F ++A +A++ +N LNGK I
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 97 VMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
V + + D R G N+++KNLD ID + L FS FG I
Sbjct: 61 VGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTIT 119
Query: 140 SCK 142
S K
Sbjct: 120 SAK 122
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 260 (96.6 bits), Expect = 7.7e-32, Sum P(2) = 7.7e-32
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 185
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 186 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 231 (86.4 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 65/225 (28%), Positives = 111/225 (49%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK---PIRV---MYSHRDP 104
++VR+C S RS + ++ AA ++ N N P + S D
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDS 60
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 163
+ N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + +
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++ F
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLF 174
Query: 224 GEYGTI-TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+YG I TS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 175 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 134 (52.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 132 (51.5 bits), Expect = 7.7e-32, Sum P(2) = 7.7e-32
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 131 (51.2 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 145 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 204
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 205 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 130 (50.8 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 62 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 118
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 119 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 148
Score = 122 (48.0 bits), Expect = 8.6e-31, Sum P(2) = 8.6e-31
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 119 (46.9 bits), Expect = 0.00027, P = 0.00027
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 367 NGYRLGDRVLQVSF 380
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 257 (95.5 bits), Expect = 8.1e-32, Sum P(2) = 8.1e-32
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 106 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 227 (85.0 bits), Expect = 5.8e-26, Sum P(2) = 5.8e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 131 (51.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 130 (50.8 bits), Expect = 8.1e-32, Sum P(2) = 8.1e-32
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 106 TLNGLRLQTKTIKVSYARPSS 126
Score = 121 (47.7 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 339 MAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 345 NGYRLGDRVLQVSF 358
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 257 (95.5 bits), Expect = 8.1e-32, Sum P(2) = 8.1e-32
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 106 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 227 (85.0 bits), Expect = 5.8e-26, Sum P(2) = 5.8e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 131 (51.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 130 (50.8 bits), Expect = 8.1e-32, Sum P(2) = 8.1e-32
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 106 TLNGLRLQTKTIKVSYARPSS 126
Score = 121 (47.7 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 339 MAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 345 NGYRLGDRVLQVSF 358
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 257 (95.5 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 111 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 228 (85.3 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
Identities = 56/176 (31%), Positives = 94/176 (53%)
Query: 100 SHRDPSLRKSGAG------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSK 152
S PS ++GA N+ + L + + + F + G I SCK+ D + GQS
Sbjct: 33 SRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSL 92
Query: 153 GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
GYGFV + + + A+KAI LNG+ L K + V + + I + N+YV L +
Sbjct: 93 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPK 146
Query: 213 STTEEDLQKSFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+ T+++L++ F +YG I TS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 131 (51.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 128 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 187
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQ 224
Score = 130 (50.8 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 104 DAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 125 (49.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 111 TLNGLRLQTKTIKVSYARPSS 131
Score = 121 (47.7 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 350 NGYRLGDRVLQVSFKTNK 367
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 284 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 343
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 344 MAIASLNGYRLGDRVLQVSFKTNKTHK 370
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 350 NGYRLGDRVLQVSF 363
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 257 (95.5 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 111 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 227 (85.0 bits), Expect = 6.9e-26, Sum P(2) = 6.9e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 131 (51.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 128 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 187
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 130 (50.8 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 125 (49.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 111 TLNGLRLQTKTIKVSYARPSS 131
Score = 121 (47.7 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 350 NGYRLGDRVLQVSFKTNK 367
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 284 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 343
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 344 MAIASLNGYRLGDRVLQVSFKTNKAHK 370
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 350 NGYRLGDRVLQVSF 363
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 256 (95.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++
Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D G S+G GF++FD A++AI+ LNG
Sbjct: 157 LLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 223 (83.6 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + F + G+I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ +++++++ F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++++QLFS +G I + +++ D + G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGK--MVVSKPLYVALAQRKEDR 387
EA A+ +NG+ + ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 130 (50.8 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 129 (50.5 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG K K V A+ S
Sbjct: 99 TLNGLKLQTKTIKVSYARPSS 119
Score = 127 (49.8 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKKFDDKEWYVG-KAQKK 281
NG + ++ V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+GAG IF+ NL D L F FG + + KV D + KG+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 346 NGYRLGERVLQVSF 359
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 256 (95.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++
Sbjct: 99 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D G S+G GF++FD A++AI+ LNG
Sbjct: 157 LLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 223 (83.6 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + F + G+I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ +++++++ F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 27/94 (28%), Positives = 54/94 (57%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++++QLFS +G I + +++ D + G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGK--MVVSKPLYVALAQRKEDR 387
EA A+ +NG+ + ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 130 (50.8 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 129 (50.5 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG K K V A+ S
Sbjct: 99 TLNGLKLQTKTIKVSYARPSS 119
Score = 127 (49.8 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NGKKFDDKEWYVG-KAQKK 281
NG + ++ V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+GAG IF+ NL D L F FG + + KV D + KG+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 346 NGYRLGERVLQVSF 359
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 257 (95.5 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 227 (85.0 bits), Expect = 7.3e-26, Sum P(2) = 7.3e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 131 (51.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 176 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 130 (50.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 125 (49.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 99 TLNGLRLQTKTIKVSYARPSS 119
Score = 121 (47.7 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 346 MAIASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 352 NGYRLGDRVLQVSF 365
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 257 (95.5 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 227 (85.0 bits), Expect = 7.3e-26, Sum P(2) = 7.3e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 131 (51.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 176 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 130 (50.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 125 (49.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 99 TLNGLRLQTKTIKVSYARPSS 119
Score = 121 (47.7 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 346 MAIASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 352 NGYRLGDRVLQVSF 365
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 253 (94.1 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 223 (83.6 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 131 (51.2 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 123 (48.4 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 33 NTEDSK---TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 338 NGYRLGDRVLQVSF 351
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 253 (94.1 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 223 (83.6 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 131 (51.2 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 123 (48.4 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 33 NTEDSK---TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 338 NGYRLGDRVLQVSF 351
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 258 (95.9 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 54/152 (35%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L ++T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 185 LVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 238 (88.8 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 65/224 (29%), Positives = 111/224 (49%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG-----KPIRVMYSHRDPS 105
++VR+C S RS + ++ AA ++ N N I S D
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTAHGSNAINNCSSPIDSG 60
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+ N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + +
Sbjct: 61 NTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKD 120
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++ F
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFS 174
Query: 225 EYGTI-TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+YG I TS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 175 QYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 137 (53.3 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L S+ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 134 (52.2 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L +S T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 61 NTEDSK---TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVD 117
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 147
Score = 132 (51.5 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 130 (50.8 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 28/94 (29%), Positives = 53/94 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 144 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDK 203
Query: 356 PEEASRALLEMNGKM--VVSKPLYVALAQRKEDR 387
EA A+ +NG+ ++P+ V A +
Sbjct: 204 RIEAEEAIKGLNGQKPPAATEPITVKFANNPSQK 237
Score = 122 (48.0 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 301 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 360
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 361 MAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 367 NGYRLGDRVLQVSF 380
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 257 (95.5 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 106 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 227 (85.0 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 131 (51.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 130 (50.8 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 106 TLNGLRLQTKTIKVSYARPSS 126
Score = 121 (47.7 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 353 MAIASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 359 NGYRLGDRVLQVSF 372
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 257 (95.5 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 106 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 227 (85.0 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 131 (51.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 130 (50.8 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 106 TLNGLRLQTKTIKVSYARPSS 126
Score = 121 (47.7 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 353 MAIASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 359 NGYRLGDRVLQVSF 372
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 257 (95.5 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 122 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 179
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 180 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 227 (85.0 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 123 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 176
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 177 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 213
Score = 131 (51.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 139 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 198
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 199 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 235
Score = 130 (50.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 55 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 114
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 115 DAEKAINTLNGLRLQTKTIKVSYAR 139
Score = 125 (49.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 122 TLNGLRLQTKTIKVSYARPSS 142
Score = 121 (47.7 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 361 NGYRLGDRVLQVSFKTNK 378
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 295 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 354
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 355 MAIASLNGYRLGDRVLQVSFKTNKAHK 381
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 361 NGYRLGDRVLQVSF 374
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 257 (95.5 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 110 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 167
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 168 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 227 (85.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 111 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 164
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 165 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 201
Score = 131 (51.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 127 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 186
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 187 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 223
Score = 130 (50.8 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 43 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 102
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 103 DAEKAINTLNGLRLQTKTIKVSYAR 127
Score = 125 (49.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 110 TLNGLRLQTKTIKVSYARPSS 130
Score = 121 (47.7 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 363 NGYRLGDRVLQVSFKTNK 380
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 297 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 356
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 357 MAIASLNGYRLGDRVLQVSFKTNKAHK 383
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 363 NGYRLGDRVLQVSF 376
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 257 (95.5 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 111 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 227 (85.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 131 (51.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 128 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 187
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 130 (50.8 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
AA NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P+
Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 358 EASRALLEMNGKMVVSKPLYVALAQ 382
+A +A+ +NG + +K + V+ A+
Sbjct: 104 DAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 125 (49.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 111 TLNGLRLQTKTIKVSYARPSS 131
Score = 121 (47.7 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 358 MAIASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 364 NGYRLGDRVLQVSF 377
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 257 (95.5 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 111 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 227 (85.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 131 (51.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G+SRG GF+ F
Sbjct: 128 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 187
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 130 (50.8 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 125 (49.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 262 ALNGKKFDDKEWYVGKAQKKS 282
LNG + K V A+ S
Sbjct: 111 TLNGLRLQTKTIKVSYARPSS 131
Score = 121 (47.7 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 358 MAIASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 364 NGYRLGDRVLQVSF 377
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 250 (93.1 bits), Expect = 8.2e-31, Sum P(2) = 8.2e-31
Identities = 53/153 (34%), Positives = 86/153 (56%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + +A +A+
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++
Sbjct: 98 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRI 155
Query: 144 ATD--LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D G S+G GF++FD A++AI+ LNG
Sbjct: 156 LVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 217 (81.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 49/158 (31%), Positives = 86/158 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LNG+ L K + V + + I + N+YV L ++ +++D+++ F +YG I +
Sbjct: 99 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 232 AVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKK 267
+ ++ D G S+ GF+ F+ ++A A++ LNG+K
Sbjct: 153 SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQK 190
Score = 153 (58.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 53/188 (28%), Positives = 89/188 (47%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG K K V A+ S ++++A G K + D E+
Sbjct: 98 TLNGLKLQTKTIKVSYARPSSA-----------SIRDANLYVSGLP---KTMSQK-DMEQ 142
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYVA 379
L + + + V + +GISRG GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 143 LFSQYGRIIT-SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 201
Query: 380 LAQRKEDR 387
A +
Sbjct: 202 FANNPSQK 209
Score = 131 (51.2 bits), Expect = 8.2e-31, Sum P(2) = 8.2e-31
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGKKFDDKEWYVG-KAQKK 281
NG + D+ V K K+
Sbjct: 338 NGYRLGDRVLQVSFKTSKQ 356
Score = 130 (50.8 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + + L V+ K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 32/87 (36%), Positives = 42/87 (48%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+GAG IF+ NL D L F FG + + KV D + KG+GFV N + A
Sbjct: 272 TGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 331
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V KQ +
Sbjct: 332 MAIASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 338 NGYRLGDRVLQVSF 351
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 254 (94.5 bits), Expect = 8.6e-31, Sum P(2) = 8.6e-31
Identities = 55/153 (35%), Positives = 89/153 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-RSLGYGYVNFSNAQEAARAL 82
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ +
Sbjct: 126 NTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 183
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ D + G S+G GF++FD A++AI+ LNG
Sbjct: 184 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 227 (85.0 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 64/224 (28%), Positives = 111/224 (49%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK---PIRVMYSHR-DPSL 106
++VR+C S RS + ++ AA ++ N N P + S + +
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANCPNTINCSSPVESNN 60
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD--LNGQSKGYGFVQFDNEES 164
+ N+ + L + + + L F + G I SCK+ D GQS GYGFV + + +
Sbjct: 61 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 120
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++ F
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFS 174
Query: 225 EYGTI-TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+YG I TS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 175 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 172 (65.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 53/189 (28%), Positives = 95/189 (50%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+ V L ++ T+E+L+ FG G I S ++RD + + G+ F N D A +A
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGY-GFVNYIDPKDAEKA 124
Query: 263 LNGKKFDDKEWYVG-KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N G + Q K+ +K + + ++ + ANLY+ L ++ ++
Sbjct: 125 INTLN--------GLRLQTKT-----IKVSYA---RPSSASIRDANLYVSGLPKTMTQKE 168
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 169 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 228
Query: 379 ALAQRKEDR 387
A +
Sbjct: 229 KFANNPSQK 237
Score = 132 (51.5 bits), Expect = 8.6e-31, Sum P(2) = 8.6e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 121 (47.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 368 NGYRLGDRVLQVSFKTSK 385
Score = 119 (46.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 302 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 361
Query: 167 KAIEKLNGMLLNDKQVYV 184
AI LNG L D+ + V
Sbjct: 362 MAIASLNGYRLGDRVLQV 379
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 368 NGYRLGDRVLQVSF 381
Score = 110 (43.8 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYV L +T +L LF+Q G++++ R+ D T S G G++ F EA A++
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 213
Query: 85 LNFTPLNG--KPIRVMYSHRDPS 105
LN G +PI V +++ +PS
Sbjct: 214 LNGQKPPGATEPITVKFAN-NPS 235
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 257 (95.5 bits), Expect = 9.5e-31, Sum P(2) = 9.5e-31
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 148 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 205
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 206 LVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 227 (85.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 51/157 (32%), Positives = 87/157 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 149 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 202
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 203 SRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQK 239
Score = 130 (50.8 bits), Expect = 9.5e-31, Sum P(2) = 9.5e-31
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NLS + E L + FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
Score = 127 (49.8 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDA 256
N TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + DA
Sbjct: 83 NDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 142
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKS 282
+A+ LNG + K V A+ S
Sbjct: 143 EKAINTLNGLRLQTKTIKVSYARPSS 168
Score = 127 (49.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 149 LNGLRLQTKTIKVSYAR 165
Score = 124 (48.7 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 28/97 (28%), Positives = 54/97 (55%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +G SRG GF+ F
Sbjct: 165 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDK 224
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRAR 390
EA A+ +NG+ ++P+ V A + ++
Sbjct: 225 RIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQ 261
Score = 121 (47.7 bits), Expect = 8.3e-30, Sum P(2) = 8.3e-30
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L QLF PFG++ + KV+RD + +G GFV + +EA+ A+ +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 387 NGYRLGDRVLQVSFKTNK 404
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 109 SGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQ 166
+G G IF+ NL D L F FG + + KV D N + KG+GFV N + A
Sbjct: 321 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 380
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI LNG L D+ + V K +
Sbjct: 381 MAIASLNGYRLGDRVLQVSFKTNKTHK 407
Score = 117 (46.2 bits), Expect = 0.00049, P = 0.00049
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 387 NGYRLGDRVLQVSF 400
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 77/203 (37%), Positives = 115/203 (56%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++Y+G+L+ VTDS L++L Q G VV++ + RD G+G+ F + Q+ A ++
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
LN L GKPIRV + +D + N+F+ NLD +D + L+DTFSA G ++ +V
Sbjct: 72 LNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQV 131
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH-FLR--KQERDTEINKS 200
A D NG+SKGYGFV +D+ E+A AIE +N L +K + V + F R K ER +I +
Sbjct: 132 ARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAER 191
Query: 201 KFTNVYVKNLSESTTEEDLQKSF 223
K KN T + L F
Sbjct: 192 KLAAAAKKNKVAVTPQSTLPPGF 214
Score = 182 (69.1 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 55/195 (28%), Positives = 94/195 (48%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDA 256
++++ +Y+ NL E T+ L + + G + + + RD S FGF F + D
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A + LN K K V +A + +R + GANL++ NLD
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQ--DR--------------GVNTLIGANLFVGNLDPL 109
Query: 317 IDDEKLKQLFSPFGSITSC-KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+D+ L FS G + +V RD +G S+G GFV++ + E A A+ MN + +++KP
Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKP 169
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A ++E + R
Sbjct: 170 ITVSYAFKREGKGER 184
Score = 180 (68.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 53/194 (27%), Positives = 95/194 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
I++ NLD+ + L + G +++ + D + G+GF +F +E+ + A + L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + L K + V + +D +N N++V NL E L +F G + A
Sbjct: 73 NQVKLFGKPIRVN----RASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128
Query: 233 V-VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW---YVGKAQKKSERELEL 288
V RD +G+SK +GFV++++ + A A+EA+N + +K Y K + K ER ++
Sbjct: 129 PQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDI 188
Query: 289 KHQFEQNMKEAADK 302
E+ + AA K
Sbjct: 189 A---ERKLAAAAKK 199
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 248 (92.4 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 52/154 (33%), Positives = 88/154 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L + L +T ++ LF +G++ S ++ RD T +SLGYG+VN+ ++A RA+
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N L K I+V Y+ PS + N+++ + K++ L F FG I++ ++
Sbjct: 102 SFNGLRLQNKTIKVSYAR--PSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRI 159
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
+D + G SKG GFV+FD ++ A AI+ LNG +
Sbjct: 160 LSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 226 (84.6 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 52/155 (33%), Positives = 85/155 (54%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ I L + + + + F++ G I SCK+ D + GQS GYGFV + EE A +A+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
NG+ L +K + V + + D + K +N+YV + +S T +L+ F +G I +
Sbjct: 103 FNGLRLQNKTIKVSY--ARPSND----QIKGSNLYVSGIPKSMTLHELESIFRPFGQIIT 156
Query: 232 AVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNG 265
+ ++ D G SK GFV F+ D+A A++ LNG
Sbjct: 157 SRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 146 (56.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+V +L ++ D+ L+ LF+Q G +V+V++ RDL T++ GY +V+ SN EA A+ L
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDL-TQQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 86 NFTPLNGKPIRVMYSHRDP 104
N T L GK ++V++ P
Sbjct: 435 NGTNLAGKTLQVVFKSSTP 453
Score = 135 (52.6 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359
D+ +G+NLY+ + S+ +L+ +F PFG I + +++ D +G+S+G GFV F +EA
Sbjct: 123 DQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEA 182
Query: 360 SRALLEMNGKM 370
A+ +NG +
Sbjct: 183 DVAIKTLNGSI 193
Score = 133 (51.9 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G L++ NL DD L QLFS FG+I + K++RD + +G FV+ S EA A+L
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 365 EMNGKMVVSKPLYV 378
+NG + K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
Score = 131 (51.2 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+ +I +SK TN+ + L + T+E+++ F G I S ++RD G+S +GFVN+
Sbjct: 34 NVDIGESK-TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVR 92
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+DA RAV + NG + +K V A+ +++
Sbjct: 93 EEDALRAVSSFNGLRLQNKTIKVSYARPSNDQ 124
Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL I L + E+++ LF+ G I SCK++RD +G S G GFV + E+A RA+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 366 MNGKMVVSKPLYVALAQRKEDR 387
NG + +K + V+ A+ D+
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQ 124
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 28/71 (39%), Positives = 35/71 (49%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+F+ NL D L FS FG I++ K+ DL Q KGY FV N A A+ LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 174 GMLLNDKQVYV 184
G L K + V
Sbjct: 436 GTNLAGKTLQV 446
Score = 94 (38.1 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
++V NLS T + L + F ++G I + ++RD + K + FV+ N +A A+ +LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 265 GKKFDDK 271
G K
Sbjct: 436 GTNLAGK 442
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 275 (101.9 bits), Expect = 5.9e-22, P = 5.9e-22
Identities = 69/203 (33%), Positives = 113/203 (55%)
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
++ E+ + + TNV+VK+L +EDL+ F +YG + S+ VM D G S +GFV F +
Sbjct: 100 KELELERDQ-TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSS 158
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
++A A+E L+G ++ +K+ L + + N+ K+ NL+IK
Sbjct: 159 PQESAAAIEELDGYQYQNKKLLC-----------RLSNLYT-NLNS---KYPSNNLFIKP 203
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L + D++L++LF PFG I CKVM D +G S+ +GFV FS+ +AS+A+ MNG +
Sbjct: 204 LPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRIN 263
Query: 373 SK---PLYVALAQRKEDRRARLQ 392
PL V A ++ + +R Q
Sbjct: 264 KDSGYPLVVKYADTEQQKISRKQ 286
Score = 252 (93.8 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
Identities = 64/190 (33%), Positives = 99/190 (52%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V L D L +LF++ G+V+S +V D S GYG+V FS+ QE+A A+E
Sbjct: 109 TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMID-PKGNSYGYGFVRFSSPQESAAAIE 167
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLR-KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
L+ K + S+ +L K + N+FIK L + L F FG I+ CK
Sbjct: 168 ELDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECK 227
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY--VGHFLRKQERDTEINKS 200
V D NGQSK GFV+F +E A KAI+ +NG+ +N Y V + +++ +
Sbjct: 228 VMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKISRKQR 287
Query: 201 KFTNVYVKNL 210
K +Y + +
Sbjct: 288 KMQTIYQEKI 297
Score = 163 (62.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
N KE + N+++K+L +DE L+ LFS +G + S KVM DP G S G GFV FS
Sbjct: 98 NNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFS 157
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALA 381
+P+E++ A+ E++G +K L L+
Sbjct: 158 SPQESAAAIEELDGYQYQNKKLLCRLS 184
Score = 140 (54.3 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL++ +L +DD L QLFS FG + S +V+ D +G ++G GFV F +EA + E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 366 MNGKMVVSKPLYVALAQRKE 385
MNG + SK L V L KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
Score = 135 (52.6 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 35/108 (32%), Positives = 57/108 (52%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEK 171
N+F+ +L +D L FS FG + S +V TD + G++KGYGFV+F + A K ++
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYV-KNLSESTTEED 218
+NG + K + V L+ ++ KS + KN +E EE+
Sbjct: 830 MNGFRIGSKFLKVK--LKNEKESMNSGKSHHQHQNQNKNQNEQHLEEE 875
Score = 130 (50.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+V L V DS L+ LF+Q G++ SVRV D T + GYG+V F EA + +
Sbjct: 769 TNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQK 828
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
+N + K ++V + S+ SG + +N +K + + L +
Sbjct: 829 EMNGFRIGSKFLKVKLKNEKESMN-SGKSHHQHQNQNKNQNEQHLEE 874
Score = 119 (46.9 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 36/130 (27%), Positives = 71/130 (54%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVE 261
TN++V +L + L + F ++G + S V+ D D G++K +GFV F +D+A + +
Sbjct: 769 TNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQK 828
Query: 262 ALNGKKFDDKEWYVG-KAQKKS--------ERELELKHQFEQNMKEAADKFQGANLYIKN 312
+NG + K V K +K+S + + + K+Q EQ+++E ++ Q NL N
Sbjct: 829 EMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQNQNKNQNEQHLEEEEEE-QTFNLPENN 887
Query: 313 LDDSIDDEKL 322
+D + ++++
Sbjct: 888 IDGNESNQEI 897
Score = 106 (42.4 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ + +L++ L +VTD QL LF G+++ +V D + + G+V FS+ +A++
Sbjct: 194 YPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFA-GFVRFSSELDASK 252
Query: 81 ALEMLNFTPLN---GKPIRVMYS 100
A++ +N +N G P+ V Y+
Sbjct: 253 AIDAMNGVRINKDSGYPLVVKYA 275
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 238 (88.8 bits), Expect = 4.2e-29, Sum P(2) = 4.2e-29
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD----LSTRR----SLGYGYVNFSNA 75
T+L + L N++ +L LF+ +G+V S ++ RD +S SLGYG+VN+ N
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNP 115
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RA+ LN L K I+V Y+ PS N++I L K + K + D F+ +
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYAR--PSSDGIKDANLYISGLPKTMTQKNVEDMFTQY 173
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
G I++ ++ D +G S+G F++FD A++AI+ LNG
Sbjct: 174 GRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
Score = 188 (71.2 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 51/175 (29%), Positives = 87/175 (49%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN---------GQSKG 153
+PS K+ N+ I L + + + L FS+ G + S K+ D G S G
Sbjct: 50 EPSDAKT---NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLG 106
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
YGFV + N A++AI LNG+ L K + V + + D K N+Y+ L ++
Sbjct: 107 YGFVNYVNPSDAERAINTLNGLRLQSKTIKVSY--ARPSSDG----IKDANLYISGLPKT 160
Query: 214 TTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKK 267
T+++++ F +YG I ++ ++ D G S+ F+ F+ +A A++ LNG K
Sbjct: 161 MTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSK 215
Score = 136 (52.9 bits), Expect = 4.2e-29, Sum P(2) = 4.2e-29
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL + E L + FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + DK V KS +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 135 (52.6 bits), Expect = 5.4e-29, Sum P(2) = 5.4e-29
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAF 353
+M A+ G +++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV
Sbjct: 275 SMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTM 334
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+ EEA+ A+ +NG + K L V+ K +
Sbjct: 335 TNYEEAAMAISSLNGYRLGDKVLQVSFKSSKSHK 368
Score = 129 (50.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 94 PIRVMYSHRDPSLRKSGAGN--IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQ 150
P+ V +S ++ S + IF+ NL + D L F FG + + KV D N +
Sbjct: 266 PMSVDHSVSSMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSK 325
Query: 151 SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
KG+GFV N E A AI LNG L DK + V
Sbjct: 326 CKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQV 359
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 37/127 (29%), Positives = 63/127 (49%)
Query: 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
+D++ + G + K E ++ + +E M + + NL I L ++ E+L+ LFS
Sbjct: 21 NDRDSHKGASSIKQE-VYDMPNGYEDPMGDEPSDAK-TNLIINYLPQNMSQEELRSLFSS 78
Query: 329 FGSITSCKVMRDPS---------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
G + S K++RD G S G GFV + P +A RA+ +NG + SK + V+
Sbjct: 79 IGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVS 138
Query: 380 LAQRKED 386
A+ D
Sbjct: 139 YARPSSD 145
Score = 127 (49.8 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++D + ANLYI L ++ + ++ +F+ +G I + +++ D SG+SRG F+ F
Sbjct: 141 RPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDK 200
Query: 356 PEEASRALLEMNGKMV--VSKPLYVALA 381
EA A+ ++NG S+P+ V A
Sbjct: 201 RSEAEEAIKDLNGSKPSGASEPITVKFA 228
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + + L+ +F G V +V+V RD +T + G+G+V +N +EAA A+ L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 86 NFTPLNGKPIRVMY 99
N L K ++V +
Sbjct: 348 NGYRLGDKVLQVSF 361
Score = 115 (45.5 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GD------GKSKCFGFVNFENS 253
TN+ + L ++ ++E+L+ F G + SA ++RD G G S +GFVN+ N
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNP 115
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
DA RA+ LNG + K V A+ S+
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYARPSSD 145
Score = 107 (42.7 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ L +T + D+F Q G++++ R+ D ++ S G ++ F EA A++
Sbjct: 151 NLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKD 210
Query: 85 LNFTPLNG--KPIRVMYSHRDPSLRKS 109
LN + +G +PI V ++ +P+ K+
Sbjct: 211 LNGSKPSGASEPITVKFA-ANPNQSKN 236
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 65/113 (57%), Positives = 87/113 (76%)
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
QKK E + ELKH+FEQ ++ ++QG NLY+KNLDDSID E+L++ FSPFG+ITS KVM
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSID-ERLRKQFSPFGTITSAKVM 59
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+ G S+ GF+ FS+ EEA +A++EMNGK+V +KPLYVALAQ KE+ + L
Sbjct: 60 ME-GGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHL 111
Score = 197 (74.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 47/116 (40%), Positives = 69/116 (59%)
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
Q + H + ++D +I + + N+YVKNL +S +E L+K F +GTITSA VM +G G
Sbjct: 7 QTELKHKFEQMKQD-KITRYQGVNLYVKNLDDSI-DERLRKQFSPFGTITSAKVMMEG-G 63
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGF+ F + ++A +AV +NGK K YV AQ K E + L +Q+ M
Sbjct: 64 HSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQYMHRM 119
Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDN 161
+D R G N+++KNLD +ID + L FS FG I S KV + G SK +GF+ F +
Sbjct: 19 QDKITRYQGV-NLYVKNLDDSIDER-LRKQFSPFGTITSAKVMME-GGHSKRFGFICFSS 75
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
E A KA+ ++NG ++ K +YV K+E T + TN Y+ ++ T
Sbjct: 76 HEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHL-----TNQYMHRMASVRT 124
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 81/262 (30%), Positives = 143/262 (54%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L++ VT+ + LFNQ+G V +V D S Y +V FS+ +A++AL+
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQT 103
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNIL 139
+N L + ++V ++ +P ++S ++F+ +L +D++ L + F FG++
Sbjct: 104 MNKRLLLDREMKVNWAV-EPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVS 162
Query: 140 SCKVATDLNG-QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK---QERDT 195
KV D N +SKGYGFV + E A++AIE++NG L + + RK QE+ +
Sbjct: 163 DAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPS 222
Query: 196 EINKSKF-----------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
N+ + T+VYV N++ S TE+++++ F +G IT + K +
Sbjct: 223 HYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIF-----KMQG 276
Query: 245 FGFVNFENSDDAARAVEALNGK 266
+ FV F+N D AA+A+ +N +
Sbjct: 277 YAFVKFDNKDAAAKAIVQMNNQ 298
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 70/261 (26%), Positives = 142/261 (54%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NLD + + F+ G++ KV D G + Y FV+F + A +A++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQALQTMN 105
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LL D+++ V + ++ ++I+ ++ +V+V +LS + L+++F +G ++ A
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 234 VMRDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+RD + KSK +GFV++ ++A RA+E +NG+ + A +K + + H
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 225
Query: 293 EQNMKEAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E++ E ++ G N +Y+ N+ +DE ++Q F+ FG IT ++ + +G F
Sbjct: 226 EKSYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIFK-----MQGYAF 279
Query: 351 VAFSTPEEASRALLEMNGKMV 371
V F + A++A+++MN + V
Sbjct: 280 VKFDNKDAAAKAIVQMNNQDV 300
Score = 217 (81.4 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 51/181 (28%), Positives = 98/181 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NL + TE+ + F + G++T V+ DG + FV F + A++A++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
+ D+E V A + +++ ++ D + ++++ +L +D++KL++
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKI------------DTTRHFHVFVGDLSSEVDNQKLRE 153
Query: 325 LFSPFGSITSCKVMRDPSGI-SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F PFG ++ KV+RD + S+G GFV++ EEA RA+ +MNG+ + + + A R
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATR 213
Query: 384 K 384
K
Sbjct: 214 K 214
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 67/171 (39%), Positives = 109/171 (63%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+A +++ L++LF Q G VV+V V +D T YG++ + + ++A A+++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
LN L+GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I S K+
Sbjct: 86 LNMIKLHGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKI 144
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GF+ +D+ E++ AIE + G L+++Q+ V + +K +
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTK 195
Score = 189 (71.6 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 46/183 (25%), Positives = 95/183 (51%)
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 163
S ++ +++ LD + + L + F G +++ V D + + YGF+++ +EE
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A AI+ LN + L+ K + V + ++ ++ N+++ NL E+ L +F
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNK-ASQDKKSLDVG----ANLFIGNLDPDVDEKLLYDTF 132
Query: 224 GEYGTITS-AVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+G I S +MRD D G S+ FGF+++++ + + A+E++ G+ +++ V A KK
Sbjct: 133 SAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
Query: 282 SER 284
+
Sbjct: 193 DTK 195
Score = 159 (61.0 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRA 362
GANL+I NLD +D++ L FS FG I S K+MRDP +G SRG GF+++ + E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ M G+ + ++ + V+ A +K+ + R
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTKGER 198
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 65/167 (38%), Positives = 103/167 (61%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++Y+G+L+ V+DS +++L Q G++V+V + +D T+ GYG+V F++ ++A A +
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + D +F+ NLD + + L+DTFS FGN+++ KV
Sbjct: 74 MNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKV 133
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
A D + SKGYGFV F + ES+ AI +NG L +KQV V + +K
Sbjct: 134 ARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKK 180
Score = 205 (77.2 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 56/194 (28%), Positives = 99/194 (51%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDAA 257
+ K VY+ NL E ++ + + + G I + + +D +S + +GFV F + +DA
Sbjct: 9 QDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAE 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A +NG + K V KA ++ +E+ GA L++ NLD +
Sbjct: 69 YASRIMNGIRLYGKPIRVNKASADKQKSVEI----------------GAELFVGNLDPMV 112
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
++ L FS FG++ + KV RD S +S+G GFV+F+ E + A+ MNG+ +++K +
Sbjct: 113 TEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQV 172
Query: 377 YVALAQRKEDRRAR 390
V A +K+ + R
Sbjct: 173 SVQYAYKKDGKGER 186
Score = 201 (75.8 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 55/191 (28%), Positives = 95/191 (49%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQS-KGYGFVQFDNEESAQKAIEKL 172
++I NLD+ + + + G I++ + D QS +GYGFV+F++EE A+ A +
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
NG+ L K + V +++ EI ++V NL TE+ L +F +G + +
Sbjct: 75 NGIRLYGKPIRVNKASADKQKSVEIG----AELFVGNLDPMVTEQVLYDTFSRFGNLVNL 130
Query: 233 V-VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V RD SK +GFV+F + + + A+ +NG+ +K+ V A KK + Q
Sbjct: 131 PKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQ 190
Query: 292 FEQNMKEAADK 302
E+ + A K
Sbjct: 191 AERMLAAQARK 201
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 311 (114.5 bits), Expect = 4.6e-27, P = 4.6e-27
Identities = 89/317 (28%), Positives = 157/317 (49%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EINK 199
+ + K GFV F++E++A+ I+ N K++ G K+ R E K
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 200 SKFTNVYV----KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+ + ++L+E ++ + ++S Y + +++ +++ + +NF +
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+++ N K W + S+ E +K N F+G L + D
Sbjct: 328 PIKSIYLSNATKVKYL-WAFVTYKNSSDSEKAIKRY--NNFY-----FRGKKLLVTRAQD 379
Query: 316 S------IDDEKLKQLF 326
I+ +K+ LF
Sbjct: 380 KEERAKFIESQKISTLF 396
Score = 154 (59.3 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 69/270 (25%), Positives = 116/270 (42%)
Query: 112 GNIFIKNLD--KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G I LD K I D +A N++ T G+ G + FD E +
Sbjct: 206 GKILSCKLDSRKDIGFVYFEDEKTA-RNVIKMYNNTSFFGKKILCG-IHFDKEVRSVPNF 263
Query: 170 E----KLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
E +L+ + +K+ + H + I S ++++KNL TT +D+ F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
E G I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K E
Sbjct: 324 SEVGPIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--P 341
R +F ++ K + L+++NL + E LK L +I K+ D
Sbjct: 383 RA-----KFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYD 429
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMV 371
S SGF+ F E+A+R +N ++V
Sbjct: 430 ENSSTYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 46/164 (28%), Positives = 74/164 (45%)
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
++ S +IFIKNL + + FS G I S ++ + + FV + N
Sbjct: 296 NIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYL-WAFVTYKNSSD 354
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
++KAI++ N K++ V K+ER I K + ++++NLS +E L K
Sbjct: 355 SEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIESQKISTLFLENLSAVCNKEFL-KYLC 413
Query: 225 EYGTITSAVVMRDG-DGKSKCF-GFVNFENSDDAARAVEALNGK 266
I + DG D S + GF+ F N +DA R LN +
Sbjct: 414 HQENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLNNR 457
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 43/157 (27%), Positives = 71/157 (45%)
Query: 185 GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSK 243
GH K + K +++ +L E+ TEE L+ F +Y + SA V D KS
Sbjct: 76 GH---KNGKLKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSL 132
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
G++NFE+ ++A +A+E LN K + KE + + + + F +N
Sbjct: 133 GHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTT--------FRKNF------- 177
Query: 304 QGANLYIKNL---DDSIDDEKLKQLFSPFGSITSCKV 337
G N++ NL + + FS +G I SCK+
Sbjct: 178 -GTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL 213
Score = 121 (47.7 bits), Expect = 0.00032, P = 0.00032
Identities = 67/289 (23%), Positives = 123/289 (42%)
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
K + + +F + C + +S G+G++ F+++E A+KA+E+LN +N K++ +
Sbjct: 108 KGIFKKYPSFVSAKVC--LDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIM 165
Query: 186 HFLR----KQERDTEI--------NKSKFTNVYVKNLSES----TTEEDLQKSFG----- 224
LR ++ T + N T V+ S + + D +K G
Sbjct: 166 PSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSRKDIGFVYFE 225
Query: 225 EYGTITSAVVMRDGD---GKSKCFGFVNFENSDDAARAVEALNGKKFD-DKEWYVGKAQK 280
+ T + + M + GK G ++F D R+V +K D E + K Q
Sbjct: 226 DEKTARNVIKMYNNTSFFGKKILCG-IHF---DKEVRSVPNFETQKSRLDAETIIEKEQS 281
Query: 281 KSERELELKHQFEQNMKEAADKFQGA--NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
+E KH + N KE+ + + + +++IKNL + + FS G I S +
Sbjct: 282 LNE-----KHS-KGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSI-YL 334
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+ + + FV + ++ +A+ N K L V AQ KE+R
Sbjct: 335 SNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER 383
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/184 (28%), Positives = 93/184 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ +N + L K + V ++ ++ N+++ NL E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 281 KSER 284
K +
Sbjct: 180 KDSK 183
Score = 202 (76.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+++ VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA
Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A++ +N K K V KA + + L++ GAN++I NLD I
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEI 111
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D++ L FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 171
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A +K+ + R
Sbjct: 172 ITVSYAFKKDSKGER 186
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/184 (28%), Positives = 93/184 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ +N + L K + V ++ ++ N+++ NL E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 281 KSER 284
K +
Sbjct: 180 KDSK 183
Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+++ VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA
Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A++ +N K K V KA + + L++ GAN++I NLD I
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEI 111
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D++ L FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 171
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A +K+ + R
Sbjct: 172 ITVSYAFKKDSKGER 186
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/184 (28%), Positives = 93/184 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ +N + L K + V ++ ++ N+++ NL E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 281 KSER 284
K +
Sbjct: 180 KDSK 183
Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+++ VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA
Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A++ +N K K V KA + + L++ GAN++I NLD I
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEI 111
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D++ L FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 171
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A +K+ + R
Sbjct: 172 ITVSYAFKKDSKGER 186
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/184 (28%), Positives = 93/184 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ +N + L K + V ++ ++ N+++ NL E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 281 KSER 284
K +
Sbjct: 180 KDSK 183
Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+++ VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA
Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A++ +N K K V KA + + L++ GAN++I NLD I
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEI 111
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D++ L FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 171
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A +K+ + R
Sbjct: 172 ITVSYAFKKDSKGER 186
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/184 (28%), Positives = 93/184 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ +N + L K + V ++ ++ N+++ NL E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 281 KSER 284
K +
Sbjct: 180 KDSK 183
Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+++ VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA
Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A++ +N K K V KA + + L++ GAN++I NLD I
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEI 111
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D++ L FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 171
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A +K+ + R
Sbjct: 172 ITVSYAFKKDSKGER 186
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/184 (28%), Positives = 93/184 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ +N + L K + V ++ ++ N+++ NL E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 281 KSER 284
K +
Sbjct: 180 KDSK 183
Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+++ VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA
Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A++ +N K K V KA + + L++ GAN++I NLD I
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEI 111
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D++ L FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 171
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A +K+ + R
Sbjct: 172 ITVSYAFKKDSKGER 186
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/184 (28%), Positives = 93/184 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ +N + L K + V ++ ++ N+++ NL E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 281 KSER 284
K +
Sbjct: 180 KDSK 183
Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+++ VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA
Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A++ +N K K V KA + + L++ GAN++I NLD I
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEI 111
Query: 318 DDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D++ L FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P
Sbjct: 112 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 171
Query: 376 LYVALAQRKEDRRAR 390
+ V+ A +K+ + R
Sbjct: 172 ITVSYAFKKDSKGER 186
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A+++
Sbjct: 14 AVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G SKGY F+ F + +++ AIE +NG L ++ + V + +K +
Sbjct: 133 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 201 (75.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 51/174 (29%), Positives = 90/174 (51%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ LD+ + L + F G +++ + D + GQ +GYGFV+F +EE A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + L K + V ++ ++ N+++ NL E+ L +F +G I
Sbjct: 75 NMIKLYGKPIRVNK-ASAHNKNLDVG----ANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 233 V-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+MRD D G SK + F+NF + D + A+EA+NG+ ++ V A KK +
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 201 (75.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 59/189 (31%), Positives = 100/189 (52%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
VYV L E +E L + F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K V KA + + L++ GAN++I NLD ID++ L
Sbjct: 75 NMIKLYGKPIRVNKASAHN-KNLDV----------------GANIFIGNLDPEIDEKLLY 117
Query: 324 QLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG I K+MRDP +G S+G F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 382 QRKEDRRAR 390
+K+ + R
Sbjct: 178 FKKDSKGER 186
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 65/171 (38%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++S L++L Q G VVSV + +D T G+G+V F ++A A+++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
LN L GKPI+V + GA NIF+ NLD +D K L+DTFSAFG IL K+
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D++ G SKG+ F+ F + E++ A+E +NG L ++ + V + ++ +
Sbjct: 133 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Score = 198 (74.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 60/197 (30%), Positives = 98/197 (49%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDD 255
+ +++ +YV L E +E L + + G + S + +D + FGFV F +D
Sbjct: 7 VERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEED 66
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A A++ LN K K V KA H E+NM GAN+++ NLD
Sbjct: 67 ADYAIKILNMIKLYGKPIKVNKASA---------H--EKNMDV------GANIFVGNLDP 109
Query: 316 SIDDEKLKQLFSPFGSITSC-KVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+D++ L FS FG I K+MRD SG S+G F+ F++ E + AL MNG+ + +
Sbjct: 110 EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCN 169
Query: 374 KPLYVALAQRKEDRRAR 390
+ + V+ A +++ + R
Sbjct: 170 RAITVSYAFKRDSKGER 186
Score = 191 (72.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P + ++ I++ LD+ + L + G ++S + D + +G+GFV+F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ LN + L K + V E++ ++ N++V NL E+ L +
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNK-ASAHEKNMDVG----ANIFVGNLDPEVDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK F F+NF + + + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 281 KSER 284
+ +
Sbjct: 180 RDSK 183
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 65/171 (38%), Positives = 103/171 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG L+ V++S L++L Q G VVSV + +D T G+G+V F ++A A+++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
LN L GKPI+V + GA NIF+ NLD +D K L+DTFSAFG IL K+
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKI 132
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D++ G SKG+ F+ F + E++ A+E +NG L ++ + V + ++ +
Sbjct: 133 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Score = 198 (74.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 60/197 (30%), Positives = 98/197 (49%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDD 255
+ +++ +YV L E +E L + + G + S + +D + FGFV F +D
Sbjct: 7 VERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEED 66
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A A++ LN K K V KA H E+NM GAN+++ NLD
Sbjct: 67 ADYAIKILNMIKLYGKPIKVNKASA---------H--EKNMDV------GANIFVGNLDP 109
Query: 316 SIDDEKLKQLFSPFGSITSC-KVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+D++ L FS FG I K+MRD SG S+G F+ F++ E + AL MNG+ + +
Sbjct: 110 EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCN 169
Query: 374 KPLYVALAQRKEDRRAR 390
+ + V+ A +++ + R
Sbjct: 170 RAITVSYAFKRDSKGER 186
Score = 191 (72.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P + ++ I++ LD+ + L + G ++S + D + +G+GFV+F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ LN + L K + V E++ ++ N++V NL E+ L +
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNK-ASAHEKNMDVG----ANIFVGNLDPEVDEKLLYDT 119
Query: 223 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
F +G I +MRD D G SK F F+NF + + + A+EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 281 KSER 284
+ +
Sbjct: 180 RDSK 183
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 244 (91.0 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 59/191 (30%), Positives = 98/191 (51%)
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
++NLS +++L++ F ++GT+ + DGK K F FV F+ +A +A A+N K
Sbjct: 128 IRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRK 187
Query: 267 KFDDK----EWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-------ANLYIKNLDD 315
D+ +W + + E H+ E+ + +KF+G + L I+NL
Sbjct: 188 AIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRLIIRNLSF 245
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+++ LKQ+FS FG++ K+ P G RG FV F EA +AL MNGK + +
Sbjct: 246 KCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKDRQ 305
Query: 376 LYV--ALAQRK 384
+ V A+A+ K
Sbjct: 306 VAVDWAIAKDK 316
Score = 184 (69.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 67/290 (23%), Positives = 126/290 (43%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ I+NL + L FS FG +L K+ +G+ +G+ FV F A KA+ +N
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED-----LQKSFGEYGT 228
G + D+QV V + K + + S N+ +N++ E D +KS +
Sbjct: 298 GKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKKSISKKSD 357
Query: 229 ITSAVVMRDGDGKSKCFGFVNFEN----SDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+ D D S + EN SDD + + DD + +
Sbjct: 358 SSEDEDDDDDDDDSSGSEMDDAENESQQSDDEDDDDDDDDDDDDDDND-DDDDDDDDDDD 416
Query: 285 ELELKHQFEQNMKEA-ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S 342
+ E K ++ +D +G ++I+NL ++E L+++ FG ++ +V+ +P +
Sbjct: 417 DSEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDT 476
Query: 343 GISRGSGFVAFSTPEEASRALL------EMNGKMVVSKPLYVALAQRKED 386
G+S+G F F + E A + + E +G + + L + +A ++D
Sbjct: 477 GVSKGCAFAQFKSKEAAEKCIAAALDEKEFSGIKLDGRRLNILMAINRDD 526
Score = 156 (60.0 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 192 ERDTEINKSKF-TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
E+ I K K + + ++NLS E+DL++ F E+GT+ A + DGK + F FV F
Sbjct: 224 EKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLF 283
Query: 251 ENSDDAARAVEALNGKKFDDKE----WYVGK----AQKKSERELELKHQFEQNMKEAADK 302
+ +A +A+ A+NGKK D++ W + K A + + +K + E AD+
Sbjct: 284 KRMPEAGKALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADE 343
Query: 303 FQGANLY-IKNLDDSIDDE 320
+ A I DS +DE
Sbjct: 344 NKDAKKKSISKKSDSSEDE 362
Score = 141 (54.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 39/118 (33%), Positives = 58/118 (49%)
Query: 266 KKFDDKEWYVG-KAQKKS-ERELELKHQFEQNMKEAAD---KFQGANLYIKNLDDSIDDE 320
KK DDK+ K K S + E K +N +E K + L I+NL +D+
Sbjct: 79 KKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKKENGWLIIRNLSFKCEDD 138
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+LKQ+FS FG++ ++ P G +G FV F EA +A MN K + +P+ V
Sbjct: 139 ELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEV 196
Score = 128 (50.1 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
L+++ L ++ +E L ++FS G + +C V+ D RG G+V FS ++A RAL E+
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 368 GKMVVSKPLYVALAQRKEDRRAR 390
K+ + ++V +A++K D + R
Sbjct: 65 -KLYDDQKIFVTVAKKKLDDKKR 86
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 31/97 (31%), Positives = 57/97 (58%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
++V+ L E+ + E L + F E G + + V+ D + K + FG+V F DDA RA++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
K +DD++ +V A+KK + + + K + N K++ D
Sbjct: 65 -KLYDDQKIFVTVAKKKLD-DKKRKKNAKTN-KDSGD 98
Score = 120 (47.3 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 33/115 (28%), Positives = 63/115 (54%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
A +F++ L + ++ L + FS G + +C V D + +G+G+V F E+ AQ+A++
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
++ L +D++++V +K+ D + K+ TN +S E+ QKS GE
Sbjct: 63 EVK--LYDDQKIFVT-VAKKKLDDKKRKKNAKTN------KDSGDTEESQKS-GE 107
Score = 112 (44.5 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEE 163
P+ +K G + I+NL + L FS FG +L ++ +G+ KG+ FVQF
Sbjct: 117 PTKKKEN-GWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVS 175
Query: 164 SAQKAIEKLNGMLLNDKQVYV 184
A+KA +N + D+ V V
Sbjct: 176 EAEKARAAMNRKAIRDRPVEV 196
Score = 78 (32.5 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V L ++ L ++F+++G + + V D ++ G+GYV FS +A RAL+
Sbjct: 5 TLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCD-KEKKCRGFGYVTFSMEDDAQRALK 62
Score = 77 (32.2 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 33/114 (28%), Positives = 48/114 (42%)
Query: 278 AQKKSERELELKHQFEQ----NMKEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGS- 331
A+ SE ++ + +FE+ +K+ L + NL S+D KL L S G
Sbjct: 559 AEGISEADIAKRTRFEELKRARLKDINVYVSKTRLCVHNLPKSVDKNKLFNLCVSAAGGK 618
Query: 332 ---ITSCKVMRDPS-------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
I C++M D G S G GFV F E A +AL +N + P
Sbjct: 619 GVRIIECRIMYDKKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGP 672
Score = 76 (31.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L + +L D +L +F++ G V+ R+ ++ G+ +V F EA +A +
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKK-GFAFVQFKCVSEAEKARAAM 184
Query: 86 NFTPLNGKPIRV 97
N + +P+ V
Sbjct: 185 NRKAIRDRPVEV 196
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 294 (108.6 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 63/169 (37%), Positives = 97/169 (57%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ +L+A V + L +LF Q G V +V + RD GYG+V + E A +
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GK +R + +D GA N+FI NLD +D K L D FS+FG I++ KV
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVGA-NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+ + SKG+GF+ +DN ES+ AIE +N + +K+V++ + +K +
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Score = 214 (80.4 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 58/203 (28%), Positives = 100/203 (49%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGF 247
+ QE ++ +Y+ NL EE L + F + G + + + RD +G +GF
Sbjct: 6 KNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGF 65
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V +E + A LN K GKA + ++ + K F+ GAN
Sbjct: 66 VEYEYEYECEYAANILNMTKL------FGKALRCNKATQD-KRSFDV----------GAN 108
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
L+I NLDD +D++ L +FS FG I + KVMR+ S+G GF+++ E + A+ MN
Sbjct: 109 LFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMN 168
Query: 368 GKMVVSKPLYVALAQRKEDRRAR 390
+ + +K ++++ A +K+ + R
Sbjct: 169 NQFICNKKVHISYAFKKDSKGER 191
Score = 205 (77.2 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 61/225 (27%), Positives = 111/225 (49%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQ 166
++ ++I NLD +D + L + F GN+ + + D +NG GYGFV+++ E +
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
A LN L K + + +R ++ N+++ NL + E+ L F +
Sbjct: 76 YAANILNMTKLFGKALRCNK-ATQDKRSFDVG----ANLFIGNLDDEVDEKMLFDIFSSF 130
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I + VMR+ D SK GF++++N + + A+E +N + +K+ ++ A KK +
Sbjct: 131 GQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKG- 189
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
E +H AA+K NLY L+++ ++ + SPF S
Sbjct: 190 E-RHGTAAERFIAANK--ALNLY--PLNENNNNNNVNP--SPFTS 227
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 294 (108.6 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 63/169 (37%), Positives = 97/169 (57%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ +L+A V + L +LF Q G V +V + RD GYG+V + E A +
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GK +R + +D GA N+FI NLD +D K L D FS+FG I++ KV
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVGA-NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+ + SKG+GF+ +DN ES+ AIE +N + +K+V++ + +K +
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Score = 214 (80.4 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 58/203 (28%), Positives = 100/203 (49%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGF 247
+ QE ++ +Y+ NL EE L + F + G + + + RD +G +GF
Sbjct: 6 KNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGF 65
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V +E + A LN K GKA + ++ + K F+ GAN
Sbjct: 66 VEYEYEYECEYAANILNMTKL------FGKALRCNKATQD-KRSFDV----------GAN 108
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
L+I NLDD +D++ L +FS FG I + KVMR+ S+G GF+++ E + A+ MN
Sbjct: 109 LFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMN 168
Query: 368 GKMVVSKPLYVALAQRKEDRRAR 390
+ + +K ++++ A +K+ + R
Sbjct: 169 NQFICNKKVHISYAFKKDSKGER 191
Score = 205 (77.2 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 61/225 (27%), Positives = 111/225 (49%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQ 166
++ ++I NLD +D + L + F GN+ + + D +NG GYGFV+++ E +
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
A LN L K + + +R ++ N+++ NL + E+ L F +
Sbjct: 76 YAANILNMTKLFGKALRCNK-ATQDKRSFDVG----ANLFIGNLDDEVDEKMLFDIFSSF 130
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I + VMR+ D SK GF++++N + + A+E +N + +K+ ++ A KK +
Sbjct: 131 GQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKG- 189
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
E +H AA+K NLY L+++ ++ + SPF S
Sbjct: 190 E-RHGTAAERFIAANK--ALNLY--PLNENNNNNNVNP--SPFTS 227
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 80/267 (29%), Positives = 134/267 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G SCK+ T+ + + Y FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G + K+V V Q++DT S +V+V +LS T ED++ +F +G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE----WYVGKAQK-KSERE 285
A V++D GKSK +GFV+F N DA A+ + G+ ++ W K KS +E
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 286 LELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
K +FE + +++ K +Y + + D+ ++Q FSPFG I +V +
Sbjct: 186 NNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---- 239
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMV 371
+G FV FST E A+ A++ +NG +
Sbjct: 240 -KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 263 (97.6 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 79/275 (28%), Positives = 136/275 (49%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT+ + LF+Q+G S ++ + ++ Y +V F ++AA AL
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + + F+ FG I
Sbjct: 68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK-------QER 193
+V D+ G+SKGYGFV F N+ A+ AI + G L +Q+ RK QE
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 194 DTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+T+ +N+S N VY ++ T++ ++++F +G I V + K
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KG 241
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
+ FV F + AA A+ ++NG + + Y GK
Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 183 (69.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/181 (29%), Positives = 90/181 (49%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ K+ ++ F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A++ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 384 K 384
K
Sbjct: 176 K 176
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 80/267 (29%), Positives = 134/267 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G SCK+ T+ + + Y FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G + K+V V Q++DT S +V+V +LS T ED++ +F +G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE----WYVGKAQK-KSERE 285
A V++D GKSK +GFV+F N DA A+ + G+ ++ W K KS +E
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 286 LELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
K +FE + +++ K +Y + + D+ ++Q FSPFG I +V +
Sbjct: 186 NNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---- 239
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMV 371
+G FV FST E A+ A++ +NG +
Sbjct: 240 -KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 263 (97.6 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 79/275 (28%), Positives = 136/275 (49%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT+ + LF+Q+G S ++ + ++ Y +V F ++AA AL
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + + F+ FG I
Sbjct: 68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK-------QER 193
+V D+ G+SKGYGFV F N+ A+ AI + G L +Q+ RK QE
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 194 DTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+T+ +N+S N VY ++ T++ ++++F +G I V + K
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KG 241
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
+ FV F + AA A+ ++NG + + Y GK
Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 183 (69.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/181 (29%), Positives = 90/181 (49%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ K+ ++ F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A++ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 384 K 384
K
Sbjct: 176 K 176
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 228 (85.3 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 55/160 (34%), Positives = 85/160 (53%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F +FG + SCK+ D + GQS GYGFV + +E A+KAI
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LNG+ L +K + V R K N+YV L ++ T+ DL+ F YG I +
Sbjct: 171 LNGLRLQNKTIKVS-IARPSSESI-----KGANLYVSGLPKNMTQSDLESLFSPYGKIIT 224
Query: 232 AVVMRD---GD---GKSKCFGFVNFENSDDAARAVEALNG 265
+ ++ D G+ G SK GF+ F+ +A RA++ LNG
Sbjct: 225 SRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 227 (85.0 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 52/157 (33%), Positives = 85/157 (54%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L ++ ++ LF G+V S ++ RD T +SLGYG+VN+ ++A +A+
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 169
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V + PS N+++ L K + L FS +G I++ ++
Sbjct: 170 ALNGLRLQNKTIKVSIAR--PSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRI 227
Query: 144 ATD-LNGQ-----SKGYGFVQFDNEESAQKAIEKLNG 174
D + G+ SKG GF++FD A +AI++LNG
Sbjct: 228 LCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 157 (60.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/196 (28%), Positives = 93/196 (47%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ ++++++ F +G + S ++RD G+S +GFVN+ +DA +A+
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 169
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
ALNG + +K V A+ SE ++K A G KN+ S D E
Sbjct: 170 ALNGLRLQNKTIKVSIARPSSE-----------SIKGANLYVSGLP---KNMTQS-DLES 214
Query: 322 LKQLFSPF-GSITSCKVM--RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS--KPL 376
L + S C + +G+S+G GF+ F EA RA+ E+NG + +P+
Sbjct: 215 LFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPI 274
Query: 377 YVALAQRKEDRRARLQ 392
V A + +Q
Sbjct: 275 TVKFANNPSSNKNSMQ 290
Score = 121 (47.7 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL ++ L QLF PFG++ S KV+RD S +G GFV + EEA A+ +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + ++ L V+ K
Sbjct: 423 NGYTLGNRVLQVSFKTNK 440
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + ++ L+ LF G V SV+V RDL + + G+G+V +N +EA A++ L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 423 NGYTLGNRVLQVSF 436
Score = 119 (46.9 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRR----SLGYGYVNFSNAQEAA 79
+LYV L N+T S L LF+ G++++ R+ C +++ S G G++ F EA
Sbjct: 197 NLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEAD 256
Query: 80 RALEMLN-FTPLNG-KPIRVMYSHRDPSLRKS 109
RA++ LN TP N +PI V +++ +PS K+
Sbjct: 257 RAIKELNGTTPKNSTEPITVKFAN-NPSSNKN 287
Score = 118 (46.6 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ T E L + FG +G + S V+RD K K FGFV N ++A A+++L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 264 NGKKFDDKEWYVG-KAQKKSE 283
NG ++ V K K +
Sbjct: 423 NGYTLGNRVLQVSFKTNKNKQ 443
Score = 118 (46.6 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL + L F FG + S KV DL + + KG+GFV N E A AI+ L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L ++ + V K ++
Sbjct: 423 NGYTLGNRVLQVSFKTNKNKQ 443
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 79/294 (26%), Positives = 141/294 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G SCK+ D G Y FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 174 G--MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G +L D +V Q++DT S +V+V +LS + +D++ +F +G I+
Sbjct: 70 GRKILGKDMKVNWASTPSSQKKDT----SNHFHVFVGDLSPEISTDDVRAAFAPFGKISD 125
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE----WYVGK--AQKKSER 284
A V++D GKSK +GF++F N DA A++ +NG+ ++ W K A K +
Sbjct: 126 ARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNE 185
Query: 285 ELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
KH +E+ + +++ +Y + + D+ ++Q FSPFG I +V +
Sbjct: 186 GASSKHLSYEEVLNQSSPS--NCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE--- 240
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+G FV F + E A+ A++ +NG + + + D R+ Q+ + Q
Sbjct: 241 --KGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQ 292
Score = 242 (90.2 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 83/291 (28%), Positives = 141/291 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + +F+Q+G S ++ D T + Y +V F + AA AL
Sbjct: 10 TLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAAALAA 67
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + F+ FG I
Sbjct: 68 MNGRKILGKDMKVNWAST-PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDA 126
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+V DL G+SKGYGF+ F N+ A+ AI+++NG L +Q+ RK N+
Sbjct: 127 RVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEG 186
Query: 201 KFTNVYVKNLS-ESTTEEDLQKSFGEY-GTITSAV---VMRDGD---GK--------SKC 244
+ K+LS E + + Y G I S + +MR G+ K
Sbjct: 187 ASS----KHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKG 242
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK--AQKKSERELELKHQ 291
+ FV F++ + AA A+ ++NG + + Y GK A +S +++ + Q
Sbjct: 243 YSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQ 293
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 283 (104.7 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 76/286 (26%), Positives = 146/286 (51%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGN--ILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIE 170
I++ +L +D L+ +F++ I+S KV + N G S+GYGFV+F++ + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 171 KLNGMLL-NDKQVYVGHFLRKQERDTEI-NKSKFTNVYVKNLSESTTEEDLQKSFGE-YG 227
+ NG + N Q + ++ + + N +++V +LS ++ L ++F E Y
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 228 TITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
++ +A V+ D + G+SK +GFV F + ++ +A+ +NG K + +G A +
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY 282
Query: 287 ELKHQFEQN--MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
+ + + N + +++ LD S+ DE LKQ F+ FG I S K+ P G
Sbjct: 283 QQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVG- 338
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+G GFV F A AL ++NG ++ + + ++ + +++ R
Sbjct: 339 -KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
Score = 277 (102.6 bits), Expect = 2.2e-23, P = 2.2e-23
Identities = 85/265 (32%), Positives = 136/265 (51%)
Query: 25 SLYVGDLEANVTDSQLYDLF--NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++VGDL + ++ L F ++VSV+V R+ + S GYG+V F + A + L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 83 EMLNFT--PLNGKPIRV---MYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSA-F 135
N T P +P R+ +S + L +G +IF+ +L + LH+TFS +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 136 GNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL-RK--- 190
++ + KV D N G+SKGYGFV+F +E KA+ ++NG+ + + + +G RK
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 281
Query: 191 -QERDTEINKSKFTN---------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
Q++ + T ++V L S T+EDL++ F E+G I S V + G G
Sbjct: 282 YQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS-VKIPVGKG 340
Query: 241 KSKCFGFVNFENSDDAARAVEALNG 265
C GFV F N +A A+E LNG
Sbjct: 341 ---C-GFVQFVNRPNAEEALEKLNG 361
Score = 198 (74.8 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 59/192 (30%), Positives = 98/192 (51%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S++VGDL +V+D+ L++ F++ V + +V D +T RS GYG+V F + E +A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 84 MLNFTPLNGKPIRVM---------YSHRD---PS---LRKSGA---GNIFIKNLDKAIDH 125
+N + + +R+ Y + P+ R G IF+ LD ++
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+ L F+ FG I+S K+ KG GFVQF N +A++A+EKLNG ++ + V +
Sbjct: 318 EDLKQPFNEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 372
Query: 186 ---HFLRKQERD 194
+ KQ RD
Sbjct: 373 WGRNPANKQPRD 384
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++VG L+++VTD L FN+ G++VSV++ G G+V F N A ALE
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALE 357
Query: 84 MLNFTPLNGKPIRVMYSHRDPS 105
LN T + + +R+ + R+P+
Sbjct: 358 KLNGTVIGKQTVRLSWG-RNPA 378
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 283 (104.7 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 84/265 (31%), Positives = 139/265 (52%)
Query: 25 SLYVGDLEANVTDSQLYDLFN--QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++VGDL+ + ++ L F + ++VS++V R+ S GYG+V F + A + L
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 83 EMLNFTPL--NGKPIRV---MYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSA-F 135
+ N P+ +P R+ +S + L +G +IF+ +L + LH+TFS +
Sbjct: 164 QEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 136 GNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL-RK--- 190
++ + KV D N G+SKGYGFV+F +E KA+ ++NG+ + + + +G RK
Sbjct: 224 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 283
Query: 191 -QERDTEINKSKFTN---------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
Q++ + FT ++V L S T+EDL++ F E+G I S V + G G
Sbjct: 284 YQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVS-VKIPVGKG 342
Query: 241 KSKCFGFVNFENSDDAARAVEALNG 265
C GFV F N +A A+E LNG
Sbjct: 343 ---C-GFVQFVNRPNAEEALEKLNG 363
Score = 283 (104.7 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 82/319 (25%), Positives = 158/319 (49%)
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGN--IL 139
F+P + P + H+ + A N I++ +L +D L+ F++ I+
Sbjct: 73 FSPYHQYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIV 132
Query: 140 SCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLL-NDKQVYVGHFLRKQERDTEI 197
S KV + NG S+GYGFV+F++ + A K +++ NG + N Q + ++ + +
Sbjct: 133 SLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRL 192
Query: 198 -NKSKFTNVYVKNLSESTTEEDLQKSFGE-YGTITSAVVMRDGD-GKSKCFGFVNFENSD 254
N +++V +L+ ++ L ++F E Y ++ +A V+ D + G+SK +GFV F + +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN---MKEAADKFQGANLYIK 311
+ +A+ +NG K + +G A + + + + + + D +++
Sbjct: 253 ERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTIN-TTIFVG 311
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
LD S+ DE LKQ FS FG I S K+ P G +G GFV F A AL ++NG ++
Sbjct: 312 GLDSSVTDEDLKQPFSEFGEIVSVKI---PVG--KGCGFVQFVNRPNAEEALEKLNGTVI 366
Query: 372 VSKPLYVALAQRKEDRRAR 390
+ + ++ + +++ R
Sbjct: 367 GKQTVRLSWGRNPANKQPR 385
Score = 204 (76.9 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 61/192 (31%), Positives = 98/192 (51%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S++VGDL +V+D+ L++ F++ V + +V D +T RS GYG+V F + E +A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 84 MLNFTPLNGKPIRVM---------YSHRD---PS---LRKSGAG---NIFIKNLDKAIDH 125
+N + + +R+ Y + PS R G IF+ LD ++
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+ L FS FG I+S K+ KG GFVQF N +A++A+EKLNG ++ + V +
Sbjct: 320 EDLKQPFSEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 374
Query: 186 ---HFLRKQERD 194
+ KQ RD
Sbjct: 375 WGRNPANKQPRD 386
Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++VG L+++VTD L F++ G++VSV++ G G+V F N A ALE
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALE 359
Query: 84 MLNFTPLNGKPIRVMYSHRDPS 105
LN T + + +R+ + R+P+
Sbjct: 360 KLNGTVIGKQTVRLSWG-RNPA 380
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 65/170 (38%), Positives = 99/170 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L + DL+ VT+S L +LF Q VV V + +D T++ G YV F ++ +A AL+++
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL-SCKVA 144
F L K I++ ++D GA N+FI NLD +D + LHDTFS FG I+ + KV
Sbjct: 75 KFVRLFNKEIKIKKENKDKV--DIGA-NLFIGNLDADVDERILHDTFSRFGTIIFTPKVM 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
D NG SKG+ F+ FD+ E++ AIE +N L +K + V + +K +
Sbjct: 132 RDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNE 181
Score = 179 (68.1 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 47/174 (27%), Positives = 90/174 (51%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+ I++LD + L + F ++ + D L Q G +V+F + A+ A++ +
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT-S 231
+ L +K++ + +K+ +D +++ N+++ NL E L +F +GTI +
Sbjct: 75 KFVRLFNKEIKI----KKENKD-KVDIG--ANLFIGNLDADVDERILHDTFSRFGTIIFT 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
VMRD +G SK F F+NF++ + + A+EA+N + +K V A+KK E
Sbjct: 128 PKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNE 181
Score = 173 (66.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 297 KEAADKFQ-GANLYIKNLDDSIDDEKLKQLFSPFGSIT-SCKVMRDPSGISRGSGFVAFS 354
KE DK GANL+I NLD +D+ L FS FG+I + KVMRD +G+S+G F+ F
Sbjct: 88 KENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFD 147
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ E + A+ MN + + +KP+ V A RK+D R
Sbjct: 148 SFEASDAAIEAMNSQFLCNKPISVTYA-RKKDSNER 182
Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 27/88 (30%), Positives = 53/88 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++G+L+A+V + L+D F++ G ++ + +V RD S G+ ++NF + + + A+E
Sbjct: 99 NLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFAFINFDSFEASDAAIE 157
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
+N L KPI V Y+ + S + G+
Sbjct: 158 AMNSQFLCNKPISVTYARKKDSNERHGS 185
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 77/268 (28%), Positives = 129/268 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G + K+V V Q++DT S +V+V +LS T ED++ +F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K K
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KS 180
Query: 291 QFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
+E N K E + N +Y + + ++ ++Q FSPFG I +V D
Sbjct: 181 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 237
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMV 371
+G F+ FS+ E A+ A++ +NG +
Sbjct: 238 --KGYSFIRFSSHESAAHAIVSVNGTTI 263
Score = 265 (98.3 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 79/275 (28%), Positives = 138/275 (50%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ-------ER 193
+V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK E
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 194 DTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+T+ +++S N VY ++ TE+ ++++F +G I V D K
Sbjct: 185 NTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
+ F+ F + + AA A+ ++NG + + Y GK
Sbjct: 240 YSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 183 (69.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/181 (29%), Positives = 90/181 (49%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ K+ ++ F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 384 K 384
K
Sbjct: 174 K 174
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 196 (74.1 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 45/157 (28%), Positives = 80/157 (50%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+T L+VG + + + ++ +LF + + SV + ++ +T G +V+ + +EA RA+
Sbjct: 2 STKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAI 61
Query: 83 EML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
E L N G + + D K A +F+ L ++ + + + + F G +
Sbjct: 62 EQLHNSKKFQGVLNNLQVKYADSEQEKL-ASKLFVGMLPRSYEEEQIRELFEPHGVVEDI 120
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
+ N +SKG GF++FDN ESA AI LNGM L+
Sbjct: 121 CILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLD 157
Score = 173 (66.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 50/200 (25%), Positives = 98/200 (49%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCK-VATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
+F+ + K+ + + + + F+ NI S + + +G FV + E A +AIE+L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 173 NGMLLNDKQVY-VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+ N K+ V + L+ + D+E K + ++V L S EE +++ F +G +
Sbjct: 65 H----NSKKFQGVLNNLQVKYADSEQEKLA-SKLFVGMLPRSYEEEQIRELFEPHGVVED 119
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD-------KEWYVGKAQKKSER 284
++R + +SK GF+ F+N + A A+ LNG K D K K +KK ++
Sbjct: 120 ICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKKKKQK 179
Query: 285 ELELKHQFEQNMKEAADKFQ 304
+ +++ Q +Q ++ + Q
Sbjct: 180 QQQIQIQMQQRQQQQQQQQQ 199
Score = 160 (61.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 49/191 (25%), Positives = 96/191 (50%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVE 261
T ++V + +S EE+++ F I S ++++ + + FV+ + ++A RA+E
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ K K Q L++K+ + ++ A K L++ L S ++E+
Sbjct: 63 QLHNSK---------KFQGVLNN-LQVKYA-DSEQEKLASK-----LFVGMLPRSYEEEQ 106
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVS-KPLYVA 379
+++LF P G + ++R P+ S+G GF+ F E A A+ +NG K+ S PL V
Sbjct: 107 IRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVK 166
Query: 380 LAQRKEDRRAR 390
A ++D++ +
Sbjct: 167 FADTEKDKKKK 177
Score = 150 (57.9 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAF 353
N K + QG+NL++ N+ + D L LF +G + S KV D + G+S+G GFV++
Sbjct: 392 NKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSY 451
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQ 382
P A+ A+ ++G+M+ K L V+L Q
Sbjct: 452 DNPASANLAISNLHGQMMAGKKLKVSLKQ 480
Score = 133 (51.9 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGF 156
M + ++ S+ G+ N+F+ N+ L F +G ++S KV D N G SKG+GF
Sbjct: 390 MGNKKNQSVGPQGS-NLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGF 448
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYV 184
V +DN SA AI L+G ++ K++ V
Sbjct: 449 VSYDNPASANLAISNLHGQMMAGKKLKV 476
Score = 109 (43.4 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVE 261
+N++V N+ ++ DL F +YG + SA V D + G SK FGFV+++N A A+
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 262 ALNGKKFDDKEWYVGKAQKKSE 283
L+G+ K+ V Q +
Sbjct: 463 NLHGQMMAGKKLKVSLKQTSGQ 484
Score = 94 (38.1 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+ L+VG L + + Q+ +LF G V + + R ++ S G G++ F N + A A+
Sbjct: 91 SKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSE-SKGCGFIKFDNRESALSAIA 149
Query: 84 MLNFTPLNGKP 94
LN L+G P
Sbjct: 150 TLNGMKLDGSP 160
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 213 (80.0 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 43/117 (36%), Positives = 70/117 (59%)
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L +SLGYG+VN+ A++A +A+ LN L K I+V Y+ PS N+++
Sbjct: 79 LQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYAR--PSSESIKGANLYVSG 136
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
L K + L F++FG I++ ++ D ++G SKG GF++FD A++AI++LNG
Sbjct: 137 LPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 197 (74.4 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 51/147 (34%), Positives = 78/147 (53%)
Query: 126 KALHDTFSAFGNILSCKVATDLN-----GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K + D S GN++ T LN GQS GYGFV + E A+KA+ LNG+ L +K
Sbjct: 56 KLVRDKVS--GNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNK 113
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-D 239
+ V + E K N+YV L ++ ++ DL+ F +G I ++ ++ D
Sbjct: 114 VIKVSYARPSSE------SIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNIS 167
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGK 266
G SK GF+ F+ ++A RA++ LNGK
Sbjct: 168 GLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 169 (64.5 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 51/203 (25%), Positives = 95/203 (46%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGK---SKCFGFVNFENS 253
N TN+ V L ++ T+E+++ F G + S ++RD G +N
Sbjct: 21 NDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQ 80
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ +N + +D E V + +K + + +++ +GANLY+ L
Sbjct: 81 QGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYA---RPSSESIKGANLYVSGL 137
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV- 371
++ L+ +F+ FG I + +++ D SG+S+G GF+ F EA RA+ E+NGK
Sbjct: 138 PKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPK 197
Query: 372 -VSKPLYVALAQRKEDRRARLQV 393
++P+ V A + A+ Q+
Sbjct: 198 GYAEPITVKFANNPSNS-AKAQI 219
Score = 119 (46.9 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ T E L + FG +G + S V+RD K K FGFV N D+A A+++L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 264 NG 265
NG
Sbjct: 335 NG 336
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L ++ L+ LF G V SV+V RDL T + G+G+V +N EA A++ L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 335 NGYTLGNRVLQVSF 348
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 33/102 (32%), Positives = 51/102 (50%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+ ++PL G ++ + P +G+G IF+ NL + L F FG + S KV
Sbjct: 248 IRYSPLAGD---LLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKV 304
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
DL + KG+GFV N + A AI+ LNG L ++ + V
Sbjct: 305 IRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQV 346
Score = 114 (45.2 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL ++ L QLF PFG++ S KV+RD + +G GFV + +EA A+ +
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + ++ L V+ K
Sbjct: 335 NGYTLGNRVLQVSFKTNK 352
Score = 109 (43.4 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYV L N++ L +F G++++ R+ D + S G G++ F EA RA++
Sbjct: 131 NLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQE 190
Query: 85 LNF-TPLN-GKPIRVMYSHRDPS 105
LN TP +PI V +++ +PS
Sbjct: 191 LNGKTPKGYAEPITVKFAN-NPS 212
Score = 88 (36.0 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 36/142 (25%), Positives = 62/142 (43%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-----LSTRRSL-----------GY 67
T+L V L +T ++ LF+ +G++ S ++ RD L SL
Sbjct: 26 TNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSL 85
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIR---VMYSHRDPSLRKSGAGNIFIKNLDKAID 124
GY F N A A + +N LNG ++ + S+ PS N+++ L K +
Sbjct: 86 GY-GFVNYVRAEDAEKAVN--TLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLS 142
Query: 125 HKALHDTFSAFGNILSCKVATD 146
L F++FG I++ ++ D
Sbjct: 143 QPDLEGMFASFGKIITSRILCD 164
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 76/268 (28%), Positives = 132/268 (49%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G + K+V V Q++DT S +V+V +LS T ED++ +F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K K
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KS 180
Query: 291 QFEQNMKEAA-----DKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
+E N K+ + ++ +N +Y + + ++ ++Q FSPFG I +V D
Sbjct: 181 TYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 237
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMV 371
+G FV F++ E A+ A++ +NG +
Sbjct: 238 --KGYSFVRFNSHESAAHAIVSVNGTTI 263
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 81/275 (29%), Positives = 139/275 (50%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ-------ER 193
+V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK E
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 194 DTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+T+ +N+S +N VY ++ TE+ ++++F +G I V D K
Sbjct: 185 NTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
+ FV F + + AA A+ ++NG + + Y GK
Sbjct: 240 YSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 181 (68.8 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 53/181 (29%), Positives = 90/181 (49%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ K+ ++ F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 384 K 384
K
Sbjct: 174 K 174
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 276 (102.2 bits), Expect = 6.9e-24, P = 6.9e-24
Identities = 74/264 (28%), Positives = 130/264 (49%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + F G SCK+ D G Y FV+F A ++ +N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G + K+V V Q++DT S +V+V +LS T +D++ +F +G I+
Sbjct: 69 GRKIMGKEVKVNWATSPSSQKKDT----SNHFHVFVGDLSPEITTDDIRAAFAPFGRISD 124
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE----WYVGKAQK-KSERE 285
A V++D GKSK +GFV+F N DA A++ + G+ ++ W K K+ E
Sbjct: 125 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYE 184
Query: 286 LELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
KH F++ + +++ +Y + + ++ ++Q FSPFG I +V D
Sbjct: 185 TNTKHLSFDEVVNQSSPS--NCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD---- 238
Query: 345 SRGSGFVAFSTPEEASRALLEMNG 368
+G FV F++ E A+ A++ +NG
Sbjct: 239 -KGYSFVRFNSHESAAHAIVSVNG 261
Score = 271 (100.5 bits), Expect = 9.2e-23, P = 9.2e-23
Identities = 81/275 (29%), Positives = 137/275 (49%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF Q+G S ++ D T + Y +V F + AA +L
Sbjct: 9 TLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLAA 66
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + F+ FG I
Sbjct: 67 MNGRKIMGKEVKVNWA-TSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDA 125
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ-------ER 193
+V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK E
Sbjct: 126 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYET 185
Query: 194 DTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+T+ +N+S +N VY ++ TE+ ++++F +G I V D K
Sbjct: 186 NTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-----KG 240
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
+ FV F + + AA A+ ++NG + + Y GK
Sbjct: 241 YSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGK 275
Score = 181 (68.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 52/181 (28%), Positives = 91/181 (50%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + FG+ G S ++ D G + FV F AA ++ A+N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ K+ ++ F ++++ +L I + ++
Sbjct: 69 GRKIMGKEVKVNWATSPSSQK-----------KDTSNHF---HVFVGDLSPEITTDDIRA 114
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 115 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 174
Query: 384 K 384
K
Sbjct: 175 K 175
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 215 (80.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 53/166 (31%), Positives = 89/166 (53%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-------------RRSLGYGYV 70
T+L V L +T+ ++ LF+ +G++ SV++ RD S +SLGYG+V
Sbjct: 149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFV 208
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
N+ Q+A +A+ +LN L K I+V ++ PS N+++ L K + + L
Sbjct: 209 NYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEA 266
Query: 131 TFSAFGNILSCKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNG 174
F+ FG I++ ++ + Q+KG GF++FD E A +AI LNG
Sbjct: 267 IFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 196 (74.1 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 54/169 (31%), Positives = 87/169 (51%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD--------LN------GQSKGYGFVQ 158
N+ + L + + + FS+ G I S K+ D LN GQS GYGFV
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ + A++A+ LNG+ L +K + V F R + K N+YV L ++ T+++
Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARPSS-----DAIKGANLYVSGLPKTMTQQE 263
Query: 219 LQKSFGEYGTI-TSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNG 265
L+ F +G I TS ++ G D ++K GF+ F+ ++A RA+ ALNG
Sbjct: 264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 46/170 (27%), Positives = 90/170 (52%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF-GFVNFEN-SDDAARAV 260
TN+ V L ++ TE++++ F G I S ++RD KS+ + +N + S +
Sbjct: 149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD---KSQVYIDPLNPQAPSKGQSLGY 205
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N + D E V + +K F + ++D +GANLY+ L ++ +
Sbjct: 206 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA---RPSSDAIKGANLYVSGLPKTMTQQ 262
Query: 321 KLKQLFSPFGSITSCKVMRDPSGIS--RGSGFVAFSTPEEASRALLEMNG 368
+L+ +F+PFG+I + +++++ + +G GF+ F EEA+RA++ +NG
Sbjct: 263 ELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 124 (48.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEM 366
++I NL ++ L QLF PFG++ S K+++DP+ +G GFV+ + +EA+ A+ +
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + ++ L V+ K
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
Score = 123 (48.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 30/76 (39%), Positives = 38/76 (50%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
GA IFI NL + AL F FG + S K+ D Q KGYGFV N + A A
Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459
Query: 169 IEKLNGMLLNDKQVYV 184
I LNG + ++ + V
Sbjct: 460 IRALNGYTMGNRVLQV 475
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++ +L ++ L+ LF G V SV++ +D +T + GYG+V+ +N EAA A
Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459
Query: 82 LEMLNFTPLNGKPIRVMY 99
+ LN + + ++V +
Sbjct: 460 IRALNGYTMGNRVLQVSF 477
Score = 115 (45.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEAL 263
+++ NL+ T E L + FG +G + S +++D + K +GFV+ N D+AA A+ AL
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 264 NG 265
NG
Sbjct: 464 NG 465
Score = 98 (39.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALE 83
+LYV L +T +L +F G +++ R+ ++ ++ G G++ F +EA RA+
Sbjct: 249 NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAII 308
Query: 84 MLN-FTPLN-GKPIRVMYSHRDPSLRK 108
LN TP + PI V +S+ S K
Sbjct: 309 ALNGTTPSSCTDPIVVKFSNTPGSTSK 335
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 67/166 (40%), Positives = 97/166 (58%)
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ A+ F+P PI + RD R+S G ++ N + D + DT + F
Sbjct: 16 DVTEAMLYEKFSPAG--PILSIRVCRDMITRRS-LGYAYV-NFQQPADAERALDTMN-FD 70
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I V D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 71 VIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 129
Query: 197 IN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+ ++K FTNVY+KN E +E L+ FG++G S VM D G
Sbjct: 130 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 218 (81.8 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 85 LNFTPLNGKPI 95
+NF + GKP+
Sbjct: 67 MNFDVIKGKPV 77
Score = 201 (75.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 55/151 (36%), Positives = 78/151 (51%)
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
RD I + YV + E L + I V+ D +G SK +GFV+FE
Sbjct: 39 RDM-ITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVVCDENG-SKGYGFVHFET 94
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ A RA+E +NG +D++ +VG+ + + ERE EL + A +F N+YIKN
Sbjct: 95 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKN 144
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
+ +DDE+LK LF FG S KVM D SG
Sbjct: 145 FGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 131 (51.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIK 117
S GYG+V+F + A RA+E +N LN + + V + R + GA N++IK
Sbjct: 84 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 143
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNG 149
N + +D + L D F FG LS KV TD +G
Sbjct: 144 NFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 109 (43.4 bits), Expect = 0.00039, P = 0.00039
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S +V RD + S G +V F P +A RAL
Sbjct: 6 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 65
Query: 365 EMNGKMVVSKPL 376
MN ++ KP+
Sbjct: 66 TMNFDVIKGKPV 77
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 280 (103.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 89/324 (27%), Positives = 167/324 (51%)
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
QV VR+ S++R +GYV+F +A++ +AL+ LN L G I++ + SL++
Sbjct: 309 QVSEVRIG---SSKR---FGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKE 361
Query: 109 S----GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
+ A +F+KNL + + + F N L ++ + G SKG +++F E
Sbjct: 362 NKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAE 418
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKS 222
A+KA+E+ G ++ + + + + K +++++ + + + V NLS + +EE LQ+
Sbjct: 419 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQEL 478
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F + TS + ++ G+ K + FV F ++DA A+ + N + + G+A +
Sbjct: 479 FKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIE------GRAIR-- 527
Query: 283 ERELELKH-QFEQNMKEAADKF--QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
LE +++ A F Q L+++ L + +E L++ F GSI S +++
Sbjct: 528 ---LEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIVT 581
Query: 340 D-PSGISRGSGFVAFSTPEEASRA 362
D +G S+G GFV FS+PE+A A
Sbjct: 582 DRDTGSSKGFGFVDFSSPEDAKAA 605
Score = 244 (91.0 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 74/270 (27%), Positives = 130/270 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+V +L VT+ ++ ++F + VR+ + S G Y+ F EA +ALE
Sbjct: 370 TLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN-KEGSSKGMAYIEFKTEAEAEKALEE 425
Query: 85 LNFTPLNGKPIRVMYS-HRDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNI 138
T ++G+ + + Y+ + + G G + + NL A + L + F
Sbjct: 426 KQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK---KA 482
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
S K+ + G+ KGY FV+F E A++A+ N + + + + F + +N
Sbjct: 483 TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL-EFSSPSWQKGNMN 541
Query: 199 -KSKFTN----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ F ++V+ LSE TTEE L++SF G+I++ +V G SK FGFV+F +
Sbjct: 542 ARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSP 599
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+DA A EA+ + D + + A+ K E
Sbjct: 600 EDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 629
Score = 172 (65.6 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 53/224 (23%), Positives = 103/224 (45%)
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
+ A ++F+KNL D++ L F + +V+ G SK +G+V F + E KA
Sbjct: 276 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA 335
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
++ LNG L ++ + K+ + ++VKNL TE++++ F
Sbjct: 336 LQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--A 392
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
+ +V+ +G SK ++ F+ +A +A+E G + D + + +KS++E
Sbjct: 393 LEVRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE--- 448
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
+ K ++ + L + NL + +E L++LF SI
Sbjct: 449 ------SQKGGGER-ESKTLIVNNLSYAASEETLQELFKKATSI 485
Score = 171 (65.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 53/201 (26%), Positives = 101/201 (50%)
Query: 191 QERDTEINK-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+++ TEI + +++VKNL+ + E+L+ + E+ + V G SK FG+V+
Sbjct: 266 KKKKTEIKAPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVD 325
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
F +++D +A++ LNGKK E + KA+ K LK +N KE L+
Sbjct: 326 FLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKES----LK----ENKKER----DARTLF 372
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNL + ++++K +F + +++ + G S+G ++ F T EA +AL E G
Sbjct: 373 VKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGT 429
Query: 370 MVVSKPLYVALAQRKEDRRAR 390
V + + + K + ++
Sbjct: 430 EVDGRAMVIDYTGEKSQQESQ 450
Score = 148 (57.2 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 47/206 (22%), Positives = 92/206 (44%)
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+LNG L ++ + K+ + ++VKNL TE++++ F +
Sbjct: 337 QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--ALE 394
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
+V+ +G SK ++ F+ +A +A+E G + D + + +KS++E
Sbjct: 395 VRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE----- 448
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ K ++ + L + NL + +E L++LF TS K+ ++ G +G F
Sbjct: 449 ----SQKGGGER-ESKTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQGRPKGYAF 500
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPL 376
V F T E+A AL N + + +
Sbjct: 501 VEFPTAEDAKEALNSCNNTEIEGRAI 526
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 280 (103.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 89/324 (27%), Positives = 167/324 (51%)
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
QV VR+ S++R +GYV+F +A++ +AL+ LN L G I++ + SL++
Sbjct: 311 QVSEVRIG---SSKR---FGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKE 363
Query: 109 S----GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
+ A +F+KNL + + + F N L ++ + G SKG +++F E
Sbjct: 364 NKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAE 420
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKS 222
A+KA+E+ G ++ + + + + K +++++ + + + V NLS + +EE LQ+
Sbjct: 421 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQEL 480
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F + TS + ++ G+ K + FV F ++DA A+ + N + + G+A +
Sbjct: 481 FKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIE------GRAIR-- 529
Query: 283 ERELELKH-QFEQNMKEAADKF--QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
LE +++ A F Q L+++ L + +E L++ F GSI S +++
Sbjct: 530 ---LEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIVT 583
Query: 340 D-PSGISRGSGFVAFSTPEEASRA 362
D +G S+G GFV FS+PE+A A
Sbjct: 584 DRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 244 (91.0 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 74/270 (27%), Positives = 130/270 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+V +L VT+ ++ ++F + VR+ + S G Y+ F EA +ALE
Sbjct: 372 TLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN-KEGSSKGMAYIEFKTEAEAEKALEE 427
Query: 85 LNFTPLNGKPIRVMYS-HRDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNI 138
T ++G+ + + Y+ + + G G + + NL A + L + F
Sbjct: 428 KQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK---KA 484
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
S K+ + G+ KGY FV+F E A++A+ N + + + + F + +N
Sbjct: 485 TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL-EFSSPSWQKGNMN 543
Query: 199 -KSKFTN----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ F ++V+ LSE TTEE L++SF G+I++ +V G SK FGFV+F +
Sbjct: 544 ARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSP 601
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+DA A EA+ + D + + A+ K E
Sbjct: 602 EDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 172 (65.6 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 53/224 (23%), Positives = 103/224 (45%)
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
+ A ++F+KNL D++ L F + +V+ G SK +G+V F + E KA
Sbjct: 278 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA 337
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
++ LNG L ++ + K+ + ++VKNL TE++++ F
Sbjct: 338 LQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--A 394
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
+ +V+ +G SK ++ F+ +A +A+E G + D + + +KS++E
Sbjct: 395 LEVRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE--- 450
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
+ K ++ + L + NL + +E L++LF SI
Sbjct: 451 ------SQKGGGER-ESKTLIVNNLSYAASEETLQELFKKATSI 487
Score = 167 (63.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 50/187 (26%), Positives = 94/187 (50%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
+++VKNL+ + E+L+ + E+ + V G SK FG+V+F +++D +A++ L
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 340
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGKK E + KA+ K LK +N KE L++KNL + ++++K
Sbjct: 341 NGKKLMGLEIKLEKAKSKES----LK----ENKKER----DARTLFVKNLPYRVTEDEMK 388
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+F + +++ + G S+G ++ F T EA +AL E G V + + +
Sbjct: 389 NVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGE 445
Query: 384 KEDRRAR 390
K + ++
Sbjct: 446 KSQQESQ 452
Score = 148 (57.2 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 47/206 (22%), Positives = 92/206 (44%)
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+LNG L ++ + K+ + ++VKNL TE++++ F +
Sbjct: 339 QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--ALE 396
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
+V+ +G SK ++ F+ +A +A+E G + D + + +KS++E
Sbjct: 397 VRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE----- 450
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ K ++ + L + NL + +E L++LF TS K+ ++ G +G F
Sbjct: 451 ----SQKGGGER-ESKTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQGRPKGYAF 502
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPL 376
V F T E+A AL N + + +
Sbjct: 503 VEFPTAEDAKEALNSCNNTEIEGRAI 528
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 280 (103.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 89/324 (27%), Positives = 167/324 (51%)
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
QV VR+ S++R +GYV+F +A++ +AL+ LN L G I++ + SL++
Sbjct: 311 QVSEVRIG---SSKR---FGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKE 363
Query: 109 S----GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
+ A +F+KNL + + + F N L ++ + G SKG +++F E
Sbjct: 364 NKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAE 420
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKS 222
A+KA+E+ G ++ + + + + K +++++ + + + V NLS + +EE LQ+
Sbjct: 421 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQEL 480
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F + TS + ++ G+ K + FV F ++DA A+ + N + + G+A +
Sbjct: 481 FKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIE------GRAIR-- 529
Query: 283 ERELELKH-QFEQNMKEAADKF--QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
LE +++ A F Q L+++ L + +E L++ F GSI S +++
Sbjct: 530 ---LEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIVT 583
Query: 340 D-PSGISRGSGFVAFSTPEEASRA 362
D +G S+G GFV FS+PE+A A
Sbjct: 584 DRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 244 (91.0 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 74/270 (27%), Positives = 130/270 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+V +L VT+ ++ ++F + VR+ + S G Y+ F EA +ALE
Sbjct: 372 TLFVKNLPYRVTEDEMKNVFEN---ALEVRLVLN-KEGSSKGMAYIEFKTEAEAEKALEE 427
Query: 85 LNFTPLNGKPIRVMYS-HRDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNI 138
T ++G+ + + Y+ + + G G + + NL A + L + F
Sbjct: 428 KQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK---KA 484
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
S K+ + G+ KGY FV+F E A++A+ N + + + + F + +N
Sbjct: 485 TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL-EFSSPSWQKGNMN 543
Query: 199 -KSKFTN----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ F ++V+ LSE TTEE L++SF G+I++ +V G SK FGFV+F +
Sbjct: 544 ARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSP 601
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+DA A EA+ + D + + A+ K E
Sbjct: 602 EDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
Score = 172 (65.6 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 53/224 (23%), Positives = 103/224 (45%)
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
+ A ++F+KNL D++ L F + +V+ G SK +G+V F + E KA
Sbjct: 278 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA 337
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
++ LNG L ++ + K+ + ++VKNL TE++++ F
Sbjct: 338 LQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--A 394
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
+ +V+ +G SK ++ F+ +A +A+E G + D + + +KS++E
Sbjct: 395 LEVRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE--- 450
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
+ K ++ + L + NL + +E L++LF SI
Sbjct: 451 ------SQKGGGER-ESKTLIVNNLSYAASEETLQELFKKATSI 487
Score = 167 (63.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 50/187 (26%), Positives = 94/187 (50%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
+++VKNL+ + E+L+ + E+ + V G SK FG+V+F +++D +A++ L
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 340
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGKK E + KA+ K LK +N KE L++KNL + ++++K
Sbjct: 341 NGKKLMGLEIKLEKAKSKES----LK----ENKKER----DARTLFVKNLPYRVTEDEMK 388
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+F + +++ + G S+G ++ F T EA +AL E G V + + +
Sbjct: 389 NVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGE 445
Query: 384 KEDRRAR 390
K + ++
Sbjct: 446 KSQQESQ 452
Score = 148 (57.2 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 47/206 (22%), Positives = 92/206 (44%)
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+LNG L ++ + K+ + ++VKNL TE++++ F +
Sbjct: 339 QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN--ALE 396
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
+V+ +G SK ++ F+ +A +A+E G + D + + +KS++E
Sbjct: 397 VRLVLNK-EGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE----- 450
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ K ++ + L + NL + +E L++LF TS K+ ++ G +G F
Sbjct: 451 ----SQKGGGER-ESKTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQGRPKGYAF 502
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPL 376
V F T E+A AL N + + +
Sbjct: 503 VEFPTAEDAKEALNSCNNTEIEGRAI 528
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 199 (75.1 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 47/140 (33%), Positives = 77/140 (55%)
Query: 36 TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95
TDS L++ + + V V +SLGYG+VN+ + ++A +A+ LN L K I
Sbjct: 95 TDSSLFEKWRPLDSEVIVLG----KGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 150
Query: 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGY 154
+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G
Sbjct: 151 KVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGV 208
Query: 155 GFVQFDNEESAQKAIEKLNG 174
GF++FD A++AI+ LNG
Sbjct: 209 GFIRFDKRIEAEEAIKGLNG 228
Score = 179 (68.1 bits), Expect = 9.3e-23, Sum P(3) = 9.3e-23
Identities = 41/119 (34%), Positives = 69/119 (57%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKN 209
QS GYGFV + + + A+KAI LNG+ L K + V + + I + N+YV
Sbjct: 118 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSG 171
Query: 210 LSESTTEEDLQKSFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
L ++ T+++L++ F +YG I TS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 172 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 230
Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 60/211 (28%), Positives = 104/211 (49%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVN- 249
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+ + F +
Sbjct: 43 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSL 99
Query: 250 FENSDDAARAVEALNGKKFDDKEW----YVG-KAQKKSERELE-LKHQFE----QNMKEA 299
FE V L GK + + Y+ K +K+ L L+ Q + + +
Sbjct: 100 FEKWRPLDSEVIVL-GKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 158
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358
+ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F E
Sbjct: 159 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 218
Query: 359 ASRALLEMNGKMV--VSKPLYVALAQRKEDR 387
A A+ +NG+ ++P+ V A +
Sbjct: 219 AEEAIKGLNGQKPPGATEPITVKFANNPSQK 249
Score = 132 (51.5 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 264 NGKKFDDKEWYVGKAQKKSER 284
NG + D+ V K+ +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 122 (48.0 bits), Expect = 9.3e-23, Sum P(3) = 9.3e-23
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
+++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 367 NGKMVVSKPLYVALAQRK 384
NG + + L V+ K
Sbjct: 379 NGYRLGDRVLQVSFKTNK 396
Score = 119 (46.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 29/81 (35%), Positives = 38/81 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
IF+ NL D L F FG + + KV D N + KG+GFV N + A AI L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L D+ + V K +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + +S L+ +F G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 379 NGYRLGDRVLQVSF 392
Score = 112 (44.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYV L +T +L LF+Q G++++ R+ D T S G G++ F EA A++
Sbjct: 166 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 225
Query: 85 LNFTPLNG--KPIRVMYSHRDPSLRKSGA 111
LN G +PI V +++ +PS + + A
Sbjct: 226 LNGQKPPGATEPITVKFAN-NPSQKTNQA 253
Score = 65 (27.9 bits), Expect = 9.3e-23, Sum P(3) = 9.3e-23
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
T+L V L N+T +L LF +G++ S ++ RD T
Sbjct: 49 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 86
Score = 51 (23.0 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD 146
N+ + L + + + L F + G I SCK+ D
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 83
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 225 (84.3 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 51/160 (31%), Positives = 90/160 (56%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVG++ VT+ L ++F G V S ++ R + YG+V++ + + AA A+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIR----KDKSSYGFVHYFDRRSAALAILS 115
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L G+PI+V +++ + + NIF+ +L + L+ +FS F + +V
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
D G+S+G+GFV F N++ AQ AI ++NG L+ +Q+
Sbjct: 176 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 222 (83.2 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 77/281 (27%), Positives = 126/281 (44%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEE 163
P S ++++ N+ + L + F++ G + S K+ + YGFV + +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKL---IRKDKSSYGFVHYFDRR 107
Query: 164 SAQKAIEKLNGMLLNDKQVYVGH-FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
SA AI LNG L + + V + Q DT S F N++V +LS T+ L +S
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTS---SHF-NIFVGDLSPEVTDATLYQS 163
Query: 223 FGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKE----WYV-- 275
F + + + A VM D G+S+ FGFV+F N DA A+ +NGK ++ W
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Query: 276 -----GKAQKKSERELELKHQFEQNMKEAADK------FQGANLYIKNLDDSIDDEKLKQ 324
K + +EL ++ KE ++ Q +Y+ NL + L +
Sbjct: 224 ATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHR 283
Query: 325 LFSPFGS--ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
F G+ I +V RD +G GFV ++T EA+ A+
Sbjct: 284 YFHALGAGVIEEVRVQRD-----KGFGFVRYNTHPEAALAI 319
Score = 144 (55.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 42/133 (31%), Positives = 68/133 (51%)
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+GFV++ + AA A+ +LNG+ + V A +RE + + F
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQRE------------DTSSHF- 144
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRAL 363
N+++ +L + D L Q FS F S + +VM D +G SRG GFV+F ++A A+
Sbjct: 145 --NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 364 LEMNGKMVVSKPL 376
EMNGK + S+ +
Sbjct: 203 NEMNGKWLSSRQI 215
Score = 131 (51.2 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++VGDL VTD+ LY F+ RV D T RS G+G+V+F N Q+A A+
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 85 LNFTPLNGKPIR 96
+N L+ + IR
Sbjct: 205 MNGKWLSSRQIR 216
Score = 101 (40.6 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT--ITSAVVMRDGDGKSKCFGFVNFE 251
+T N S+FT VYV NL+ T+ DL + F G I V RD K FGFV +
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-----KGFGFVRYN 310
Query: 252 NSDDAARAVEALNGKKF 268
+AA A++ N + +
Sbjct: 311 THPEAALAIQMGNTQPY 327
Score = 61 (26.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + LH F A G + +V + KG+GFV+++ A AI+ N
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ---RDKGFGFVRYNTHPEAALAIQMGN 323
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 273 (101.2 bits), Expect = 8.4e-23, P = 8.4e-23
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG+L+ ++ ++++ QMG VV++ + D +R GYG+V F + A A
Sbjct: 13 TVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARA 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
LN + GK IRV + D +F+ NLD +D K L DTFS FG +++ V
Sbjct: 73 LNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPNV 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
D N SKGYGFV FD+ E++ A + +NG L KQ+ V + +K
Sbjct: 133 VRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKK 179
Score = 200 (75.5 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 56/190 (29%), Positives = 95/190 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ NLD+ + + + G +++ + D ++ +GYGFV+FD ESA A L
Sbjct: 14 VYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARAL 73
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT-ITS 231
NG+ + K + V +++ EI F N NL E+ L +F +G +T
Sbjct: 74 NGIRVFGKVIRVNKASADKQKTAEIGAELFVN----NLDPQVDEKILFDTFSRFGQLVTP 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+RD + SK +GFVNF++ + + A + +NG+ K+ V A KK + E +H
Sbjct: 130 PNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKG-E-RHG 187
Query: 292 FEQNMKEAAD 301
E K AA+
Sbjct: 188 DEAERKLAAE 197
Score = 198 (74.8 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 59/194 (30%), Positives = 95/194 (48%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDAA 257
++K VYV NL E E + + + G + + + D ++ + +GFV F+ + A
Sbjct: 8 QNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESAD 67
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A ALNG + K V KA ++ E+ GA L++ NLD +
Sbjct: 68 YAARALNGIRVFGKVIRVNKASADKQKTAEI----------------GAELFVNNLDPQV 111
Query: 318 DDEKLKQLFSPFGS-ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
D++ L FS FG +T V+RD + IS+G GFV F + E + A MNG+ ++SK +
Sbjct: 112 DEKILFDTFSRFGQLVTPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQI 171
Query: 377 YVALAQRKEDRRAR 390
V A +K+ + R
Sbjct: 172 TVEYAYKKDGKGER 185
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 224 (83.9 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 51/156 (32%), Positives = 87/156 (55%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-T 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
S +++ G S+ GF+ F+ +A A++ LNG+
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 134 (52.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 130 (50.8 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 252
+TE +K TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ +
Sbjct: 33 NTEDSK---TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
DA +A+ LNG + K V A+ S
Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 128 (50.1 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
+ ++ + ANLY+ L ++ ++L+QLFS +G I + +++ D +GISRG GF+ F
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 356 PEEASRALLEMNGK 369
EA A+ +NG+
Sbjct: 176 RIEAEEAIKGLNGQ 189
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 269 (99.8 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 77/275 (28%), Positives = 131/275 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFT-------NVYVKNLSESTTEEDLQKSFG 224
G + K+V V Q++DT + T +V+V +LS T ED++ +F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 225 EYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 RELELKHQFEQNMKEAA-DKF------QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
K +E N K+ + D+ +Y + + ++ ++Q FSPFG I +
Sbjct: 188 AP---KSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
V D +G FV FS+ E A+ A++ +NG +
Sbjct: 245 VFPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274
Score = 243 (90.6 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 78/285 (27%), Positives = 138/285 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDT 131
+N + GK ++V ++ S +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 132 FSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 191 Q-------ERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
E +T+ +++S N VY ++ TE+ ++++F +G I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 202 (76.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ + + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 384 K 384
K
Sbjct: 185 K 185
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 268 (99.4 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 77/275 (28%), Positives = 130/275 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFT-------NVYVKNLSESTTEEDLQKSFG 224
G + K+V V Q++DT + T +V+V +LS T ED++ +F
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123
Query: 225 EYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K
Sbjct: 124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Query: 284 RELELKHQFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
K +E N K E + N +Y + + ++ ++Q FSPFG I +
Sbjct: 184 AP---KSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 240
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
V D +G F+ FS+ E A+ A++ +NG +
Sbjct: 241 VFPD-----KGYSFIRFSSHESAAHAIVSVNGTTI 270
Score = 240 (89.5 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 77/285 (27%), Positives = 138/285 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDT 131
+N + GK ++V ++ S +K + + +F+ +L I + +
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 132 FSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK
Sbjct: 122 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 181
Query: 191 Q-------ERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
E +T+ +++S N VY ++ TE+ ++++F +G I V
Sbjct: 182 PPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 241
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
D K + F+ F + + AA A+ ++NG + + Y GK
Sbjct: 242 FPD-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 281
Score = 202 (76.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ + + + + D F ++++ +L I E +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 120
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 384 K 384
K
Sbjct: 181 K 181
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 163 (62.4 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 39/101 (38%), Positives = 51/101 (50%)
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEE 163
S + +GN+FI L L FSAFG I SC+V DLN G S+G+GFV+F +
Sbjct: 92 SSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVA 151
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
SAQ AI +NG + +K + V F N S N
Sbjct: 152 SAQYAINSMNGAKVENKTLLV-RFANSDPNSNNTNNSNNNN 191
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPE 357
+++ NL+I L + + L+ +FS FG I SC+VM D +G+SRG GFV F
Sbjct: 92 SSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVA 151
Query: 358 EASRALLEMNGKMVVSKPLYVALA 381
A A+ MNG V +K L V A
Sbjct: 152 SAQYAINSMNGAKVENKTLLVRFA 175
Score = 131 (51.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV +L ++ DS LY LF+ G + SV++ RD +T+ GYG+V + ++ A+
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441
Query: 84 MLNFTPLNGKPIRVMY 99
+N + GK I V +
Sbjct: 442 SINGVQVGGKTISVSF 457
Score = 126 (49.4 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG-ISRGSGFVAFSTPEEASRALLE 365
NLY+ NL DD L +LFSP G+I S K++RD + + RG GFV + ++ A+
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 366 MNGKMVVSKPLYVA 379
+NG V K + V+
Sbjct: 443 INGVQVGGKTISVS 456
Score = 125 (49.1 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++ L A T L +F+ G++ S RV DL+T S G+G+V F + A A+
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
+N + K + V +++ DP+ + N
Sbjct: 160 MNGAKVENKTLLVRFANSDPNSNNTNNSN 188
Score = 124 (48.7 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 40/163 (24%), Positives = 69/163 (42%)
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENS 253
T N + N+++ L + T + L+ F +G I S VM D G S+ FGFV F++
Sbjct: 91 TSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDV 150
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKK----------------SERELELKHQFEQNMK 297
A A+ ++NG K ++K V A + + N
Sbjct: 151 ASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNNNNNSNNNNTN 210
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
++ N++I+ L D +L +LFS +G + K++ D
Sbjct: 211 NIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLID 253
Score = 123 (48.4 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAI 169
+ N+FI+ L D L + FSA+G ++ K+ D+ S+G G V++ + +SA A+
Sbjct: 218 SNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAV 277
Query: 170 EKLNGMLLNDKQ 181
+ LNG +L D +
Sbjct: 278 KSLNGFILQDPE 289
Score = 118 (46.6 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLE 365
N++I+ L D +L +LFS +G + K++ D + SRG G V + + A A+
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 366 MNGKMVVS--KPLYVALAQRKEDRRARLQ 392
+NG ++ KPL V A +++++ + Q
Sbjct: 280 LNGFILQDPEKPLIVRFADNEDEKKQKRQ 308
Score = 94 (38.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ ++++ L +QL +LF+ G+VV ++ D++T S G G V + + Q A A+
Sbjct: 218 SNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAV 277
Query: 83 EMLNFTPLNG--KPIRVMYSHRD 103
+ LN L KP+ V ++ +
Sbjct: 278 KSLNGFILQDPEKPLIVRFADNE 300
Score = 94 (38.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 40/178 (22%), Positives = 76/178 (42%)
Query: 132 FSAFGNILSCKVATD-LNG---QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
F F ++ S + A + +NG ++K V+F N + N +D +
Sbjct: 144 FVKFKDVASAQYAINSMNGAKVENKTL-LVRFANSDPNSNNTNNSNNNNDDDNNNNNNNN 202
Query: 188 LRKQERDTEINKSKFTN-VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCF 245
I++ K +N V+++ L + L + F YG + + ++ D S+
Sbjct: 203 NSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQ 262
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKE------WYVGKAQKKSERELELKHQFEQNMK 297
G V + ++ A AV++LNG D E + + +KK +R+ + Q QNM+
Sbjct: 263 GLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVRQNMR 320
Score = 86 (35.3 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVE 261
TN+YV NL + L + F G I S ++RD + + +GFV + D+ A+
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441
Query: 262 ALNGKKFDDK 271
++NG + K
Sbjct: 442 SINGVQVGGK 451
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 268 (99.4 bits), Expect = 3.0e-22, P = 3.0e-22
Identities = 77/275 (28%), Positives = 132/275 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFT-------NVYVKNLSESTTEEDLQKSFG 224
G + K+V V Q++DT + T +V+V +LS T ED++ +F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 225 EYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 RELELKHQFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
K +E N K E ++ +N +Y + + ++ ++Q FSPFG I +
Sbjct: 188 AP---KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
V D +G FV F++ E A+ A++ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 250 (93.1 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 83/301 (27%), Positives = 146/301 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDT 131
+N + GK ++V ++ S +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 132 FSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 191 Q-------ERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
E +T+ +N+S +N VY ++ TE+ ++++F +G I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
D K + FV F + + AA A+ ++NG E +V K E L++ + +Q
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTI---EGHVVKCYWGKET-LDMINPVQQ 296
Query: 295 N 295
N
Sbjct: 297 N 297
Score = 202 (76.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ + + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 384 K 384
K
Sbjct: 185 K 185
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 268 (99.4 bits), Expect = 3.1e-22, P = 3.1e-22
Identities = 77/275 (28%), Positives = 132/275 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFT-------NVYVKNLSESTTEEDLQKSFG 224
G + K+V V Q++DT + T +V+V +LS T ED++ +F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 225 EYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 RELELKHQFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
K +E N K E ++ +N +Y + + ++ ++Q FSPFG I +
Sbjct: 188 AP---KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
V D +G FV F++ E A+ A++ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 249 (92.7 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 79/285 (27%), Positives = 139/285 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDT 131
+N + GK ++V ++ S +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 132 FSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 191 Q-------ERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
E +T+ +N+S +N VY ++ TE+ ++++F +G I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 202 (76.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ + + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 384 K 384
K
Sbjct: 185 K 185
>TAIR|locus:2053679 [details] [associations]
symbol:AT2G15500 "AT2G15500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR eggNOG:COG0724
EMBL:AC006248 IPI:IPI00526210 PIR:G84529 RefSeq:NP_179152.1
UniGene:At.52752 ProteinModelPortal:Q9ZQG2 SMR:Q9ZQG2
EnsemblPlants:AT2G15500.1 GeneID:816042 KEGG:ath:AT2G15500
TAIR:At2g15500 Genevestigator:Q9ZQG2 Uniprot:Q9ZQG2
Length = 132
Score = 168 (64.2 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
AVE+L G FDDK+W V +AQKKSERE+ELK +EQ++KE ADKFQ N
Sbjct: 29 AVESLKGNTFDDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
Score = 82 (33.9 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 169 IEKLNGMLLNDKQVYVGHFLR 189
+ KL GMLLNDKQVYVG FLR
Sbjct: 1 MSKLIGMLLNDKQVYVGPFLR 21
Score = 50 (22.7 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 10/10 (100%), Positives = 10/10 (100%)
Query: 346 RGSGFVAFST 355
RGSGFVAFST
Sbjct: 79 RGSGFVAFST 88
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 238 (88.8 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 52/163 (31%), Positives = 89/163 (54%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS-TRRSLGYGYVNFSNAQEAARALE 83
+LYVG L+ VT+ L +F G V+SV++ D + + YG+V F + A RA++
Sbjct: 91 ALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQ 150
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILS 140
LN ++ IRV ++++ + K N IF+ +L ++ + L FSAFG++
Sbjct: 151 TLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 141 CKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+V D+ G+S+GYGFV F A+KA+ ++G L + +
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 221 (82.9 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 47/156 (30%), Positives = 89/156 (57%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKG--YGFVQFDNEESAQKAIEK 171
+++ LD + L F G+++S K+ D N SKG YGFV+FD+ +A++A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LNG ++ ++ V + + E + F +++V +LS +E L ++F +G+++
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKEDTSNHF-HIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGK 266
A VM D G+S+ +GFV F DA +A+ +++G+
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGE 246
Score = 208 (78.3 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 57/183 (31%), Positives = 98/183 (53%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC--FGFVNFENSDDAARAVEA 262
+YV L TE+ L++ F G + S ++ D + SK +GFV F++ A RA++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNG++ E V A + + N ++ ++ F ++++ +L + ++DE L
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTA----------NKEDTSNHF---HIFVGDLSNEVNDEVL 198
Query: 323 KQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
Q FS FGS++ +VM D +G SRG GFVAF +A +AL M+G+ + S+ + A
Sbjct: 199 LQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWA 258
Query: 382 QRK 384
+K
Sbjct: 259 NQK 261
Score = 125 (49.1 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL V D L F+ G V RV D+ T RS GYG+V F +A +AL +
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 86 NFTPLNGKPIRVMYSHR--DPSLRKSGA 111
+ L + IR ++++ PS+ + A
Sbjct: 244 DGEWLGSRAIRCNWANQKGQPSISQQQA 271
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS--GFVAF 353
++ AA + LY+ LD + ++ LKQ+F G + S K++ D + S+G+ GFV F
Sbjct: 80 VRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEF 139
Query: 354 STPEEASRALLEMNGKMV 371
P A RA+ +NG+ +
Sbjct: 140 DDPGAAERAMQTLNGRRI 157
Score = 80 (33.2 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+ NL + LF FG + ++ D RG F+ T E A+ A+ ++NG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 369 KMVVSKPL 376
V +PL
Sbjct: 366 YNVNGRPL 373
Score = 78 (32.5 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
T YV NL+ TT+ D+ F +G + + D + F F+ + ++AA A+
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQ 362
Query: 263 LNG 265
LNG
Sbjct: 363 LNG 365
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 266 (98.7 bits), Expect = 6.3e-22, P = 6.3e-22
Identities = 77/275 (28%), Positives = 132/275 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFT-------NVYVKNLSESTTEEDLQKSFG 224
G + K+V V Q++DT + T +V+V +LS T ED++ +F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 225 EYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 RELELKHQFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
K +E N K E ++ +N +Y + + ++ ++Q FSPFG I +
Sbjct: 188 AP---KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
V D +G FV F++ E A+ A++ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 248 (92.4 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 79/285 (27%), Positives = 139/285 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDT 131
+N + GK ++V ++ S +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 132 FSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 191 Q-------ERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
E +T+ +N+S +N VY ++ TE+ ++++F +G I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 200 (75.5 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ + + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 384 K 384
K
Sbjct: 185 K 185
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 195 (73.7 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 57/204 (27%), Positives = 99/204 (48%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQ---KSFGEYGTITSAVVMRDGDGKSK--C-FGFVNFE 251
N ++F VY+KNL+ TT E L KS +Y + A + + C FGF+ F
Sbjct: 675 NNTQF--VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFS 732
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSE---RELELKHQFEQNMKEAADKFQG--- 305
+ A ++ LNG D E + K K+E +E+ + + +N K++ G
Sbjct: 733 SKQGAYECIKKLNGSSIDGYEISL-KLSDKNETNVQEINKRRELPENSKQSIKSNGGQPN 791
Query: 306 ---ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
+ + IKNL +++++LF+ +G I S ++ + P+G RG GFV F T EEA A
Sbjct: 792 KPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNA 851
Query: 363 LLEMNGKMVVSKPLYVALAQRKED 386
+ + + L + A++ ++
Sbjct: 852 MEALGNSHFYGRHLVLQYAEQDKN 875
Score = 138 (53.6 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+K + D+ IN+ K + ++S+ + + E ++V RD + +S+
Sbjct: 241 KKDDVDSIINEKK--KKHDSSVSDLDWLSKFRSNNDEIIEKNQSIVYRDEE-ESEEEDVN 297
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER---ELELK--HQFEQNM-KEAADK 302
N EN D + + KK K+ K ++ E ++K FE + KE D
Sbjct: 298 NKENKKDKMKIDDNKENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKEDEDV 357
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
+ ++++NL S +E L+++FS FG I+ + D S S+G F+ + PE A +
Sbjct: 358 GESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQ 417
Query: 362 ALLEMNGKMVVSKPLYV 378
AL +M+GK+ + ++V
Sbjct: 418 ALNDMDGKVFQGRLIHV 434
Score = 124 (48.7 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 183 YVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK- 241
Y H K++ D + +S ++V+NLS ST EEDL+K F ++G I+ + D D K
Sbjct: 345 YFEHDYTKEDED--VGESG--RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKK 400
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV--GKA 278
SK F+ + ++A +A+ ++GK F + +V GKA
Sbjct: 401 SKGIAFILYLIPENAVQALNDMDGKVFQGRLIHVLPGKA 439
Score = 122 (48.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
T + VK L + T++ ++ F ++GT+T A +++ DGKS+ FGF+ F A A+ +
Sbjct: 4 TRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGFSTEQSAKNAL-S 61
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
LNG D + V A SE
Sbjct: 62 LNGTFIDTSKIVVETATVASE 82
Score = 106 (42.4 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 93 KPIRVM---YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG 149
KPI+ Y+ D + +SG IF++NL + + L FS FG I + D +
Sbjct: 341 KPIKYFEHDYTKEDEDVGESG--RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDS 398
Query: 150 Q-SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+ SKG F+ + E+A +A+ ++G + + ++V
Sbjct: 399 KKSKGIAFILYLIPENAVQALNDMDGKVFQGRLIHV 434
Score = 103 (41.3 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I +K L K + K + F FG + K+ +G+S+ +GF+ F E+SA+ A+ LN
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGFSTEQSAKNALS-LN 63
Query: 174 GMLLNDKQVYV 184
G ++ ++ V
Sbjct: 64 GTFIDTSKIVV 74
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 108 KSGAGN----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK------GYGFV 157
K G N ++IKNL+ ++ L F + + ++ +AT N ++ G+GF+
Sbjct: 670 KKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFI 729
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+F +++ A + I+KLNG ++ ++ + + + EINK +
Sbjct: 730 EFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRR 773
Score = 78 (32.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 40/223 (17%), Positives = 96/223 (43%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L + + L +F++ G++ + + D +++S G ++ + + A +AL +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKS--------GA-GNIFIKNLDKAIDHKALHDTFSAFG 136
+ G+ I V+ P+ + S GA G +K K + +
Sbjct: 423 DGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTTSGSTHNW- 481
Query: 137 NILSCKVATDLNGQSKGYGFVQ---FD-NEESAQKAIEKLNGMLLNDKQVYV-GHFLRKQ 191
N L + ++ ++ Y Q D N+ + + ++N+ + ++ + Q
Sbjct: 482 NALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKFLEDQGVIIQ 541
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
+ + +K T + VKN+ T E +L + F ++G ++ V+
Sbjct: 542 DIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL 584
Score = 71 (30.1 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T + V L ++TD + + F + G V ++ + +S +G++ FS Q A AL
Sbjct: 4 TRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK--KDGKSRLFGFIGFSTEQSAKNALS 61
Query: 84 MLNFTPLNGKPIRV 97
LN T ++ I V
Sbjct: 62 -LNGTFIDTSKIVV 74
Score = 65 (27.9 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 23/101 (22%), Positives = 44/101 (43%)
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
++++ LE + Q++ K L +KN+ + +L +LFS FG ++ +V+
Sbjct: 528 ETKKFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELS--RVVLS 585
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
P+ R + + P EA + PLY+ A
Sbjct: 586 PA---RTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWA 623
Score = 56 (24.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 33/133 (24%), Positives = 56/133 (42%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAARAL 82
T L V ++ + +L++LF++ G++ RV LS R++ Y++ + A+ + L
Sbjct: 553 TVLLVKNIPFKTQEHELHELFSKFGELS--RVV--LSPARTIALIEYIHPNEAKVGFKNL 608
Query: 83 EMLNF--TPL--NGKPIRVMYSHRDPS-LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
F PL P V P ++KS K+ D + D K + T
Sbjct: 609 AYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSE---KSSDSSNDKKEVESTTKTAAT 665
Query: 138 ILSCKVATDLNGQ 150
+ K TD N Q
Sbjct: 666 TTTTKKGTDNNTQ 678
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 266 (98.7 bits), Expect = 8.7e-22, P = 8.7e-22
Identities = 77/275 (28%), Positives = 132/275 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFT-------NVYVKNLSESTTEEDLQKSFG 224
G + K+V V Q++DT + T +V+V +LS T ED++ +F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 225 EYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 RELELKHQFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
K +E N K E ++ +N +Y + + ++ ++Q FSPFG I +
Sbjct: 188 AP---KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
V D +G FV F++ E A+ A++ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 248 (92.4 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 79/285 (27%), Positives = 139/285 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDT 131
+N + GK ++V ++ S +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 132 FSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 191 Q-------ERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
E +T+ +N+S +N VY ++ TE+ ++++F +G I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 200 (75.5 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 53/181 (29%), Positives = 91/181 (50%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ + + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 384 K 384
K
Sbjct: 185 K 185
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 126
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 217 (81.4 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 116
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 177 GQWLGGRQIRTNWATRK 193
Score = 151 (58.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 47/164 (28%), Positives = 73/164 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILS---- 140
L G+ IR ++ R P KS N + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 141 --CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 262 (97.3 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 126
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 217 (81.4 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 116
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 177 GQWLGGRQIRTNWATRK 193
Score = 151 (58.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 47/164 (28%), Positives = 73/164 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILS---- 140
L G+ IR ++ R P KS N + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 141 --CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 233 (87.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 65/227 (28%), Positives = 115/227 (50%)
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLS 211
Y FV+F A A+ +NG + K+V V Q++DT S +V+V +LS
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLS 123
Query: 212 ESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDD 270
T +D++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+
Sbjct: 124 PEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 183
Query: 271 KE----WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
++ W K KS ++ K +F++ + +++ Q +Y + + + ++Q
Sbjct: 184 RQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSP--QNCTVYCGGIQSGLTEHLMRQ 241
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FSPFG I +V + +G F+ FS+ E A+ A++ +NG +
Sbjct: 242 TFSPFGQIMEIRVFPE-----KGYSFIRFSSHESAAHAIVSVNGTTI 283
Score = 208 (78.3 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 66/233 (28%), Positives = 108/233 (46%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 126
Query: 124 DHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 127 TTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 186
Query: 183 YVGHFLRK-------QER-------DTEINKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK Q+ D +N+S N VY + TE ++++F +
Sbjct: 187 RTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPF 246
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + F+ F + + AA A+ ++NG + + Y GK
Sbjct: 247 GQIMEIRVFPE-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 294
Score = 159 (61.0 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 49/165 (29%), Positives = 77/165 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAFGNILS--- 140
L G+ IR ++ R P KS N K L D+ ++ + + G I S
Sbjct: 177 GGQWLGGRQIRTNWATRKPPAPKSVQDNS-AKQLRFDEVVNQSSPQNCTVYCGGIQSGLT 235
Query: 141 ---CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY F++F + ESA AI +NG
Sbjct: 236 EHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNG 280
Score = 151 (58.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 54/207 (26%), Positives = 97/207 (46%)
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVY-VKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
K +YVG+ R + + FT + K+ T + D + +I +V+
Sbjct: 8 KTLYVGNLSRDVTENLILQL--FTQIGPCKSCKMITEQSDSSRKMNS-SSIGFSVLQHTS 64
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ CF V F DAA A+ A+NG+K KE V A S ++ K+
Sbjct: 65 NDPY-CF--VEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KD 110
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPE 357
++ F ++++ +L I + ++ F+PFG I+ +V++D +G S+G GFV+F
Sbjct: 111 TSNHF---HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKL 167
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRK 384
+A A++ M G+ + + + A RK
Sbjct: 168 DAENAIVHMGGQWLGGRQIRTNWATRK 194
Score = 73 (30.8 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS-TRRSLGYGYVNFSNAQEAA 79
+LYVG+L +VT++ + LF Q+G S ++ + S + R + + FS Q +
Sbjct: 9 TLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTS 64
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 225 (84.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 55/169 (32%), Positives = 98/169 (57%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+VGDL + ++ L+ F+ G+V SV+V R+ T +S GYG+V F + A L+
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 85 LNFT--PLNGKPIRV---MYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFS-AFGN 137
+ + P + +P R+ +S + ++G ++F+ +L + LH+TFS + +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 138 ILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+ S KV D N G+SKGYGFV+F +E +A+ ++NG +++Q+ VG
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG 277
Score = 182 (69.1 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 54/184 (29%), Positives = 98/184 (53%)
Query: 204 NVYVKNLSESTTEEDLQKSFGE-YGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVE 261
+V+V +LS T+ L ++F + Y ++ SA V+ D + G+SK +GFV F + ++ +RA+
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 262 ALNGKKFDDKEWYVGKA---------QKKSERELELK--HQFEQNM---KEAADKFQGAN 307
+NG +++ VG A Q+ S + + L H +M ++ + A
Sbjct: 263 EMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNAT 322
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
+++ +D + DE L+Q FS FG + S K+ P G +G GFV F+ + A A+ +N
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---PVG--KGCGFVQFADRKSAEDAIESLN 377
Query: 368 GKMV 371
G ++
Sbjct: 378 GTVI 381
Score = 155 (59.6 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 53/184 (28%), Positives = 84/184 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
++V +L E L F G ++S V+R+ +S+ +GFV F + A A E L
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSR---AAAEEVL 166
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
Y G S++ + F K A + ++++ +L + D L
Sbjct: 167 QN--------YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLL 218
Query: 323 KQLFSP-FGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+ FS + S+ S KV+ D + G S+G GFV F E SRAL EMNG ++ + V +
Sbjct: 219 HETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGI 278
Query: 381 AQRK 384
A K
Sbjct: 279 ATPK 282
Score = 115 (45.5 bits), Expect = 0.00090, P = 0.00090
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
+S IF+ +D + + L FS FG ++S K+ KG GFVQF + +SA+
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV-----GKGCGFVQFADRKSAED 371
Query: 168 AIEKLNGMLLNDKQVYV--GHFLRKQER 193
AIE LNG ++ V + G KQ R
Sbjct: 372 AIESLNGTVIGKNTVRLSWGRSPNKQWR 399
Score = 87 (35.7 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+S ++V + +EDL++ F ++G + S V + G G C GFV F + A
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVS-VKIPVGKG---C-GFVQFADRKSAED 371
Query: 259 AVEALNG 265
A+E+LNG
Sbjct: 372 AIESLNG 378
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 262 (97.3 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 126
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 217 (81.4 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 116
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 177 GQWLGGRQIRTNWATRK 193
Score = 151 (58.2 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 47/164 (28%), Positives = 73/164 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILS---- 140
L G+ IR ++ R P KS N + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 141 --CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 262 (97.3 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 126
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 217 (81.4 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 116
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 177 GQWLGGRQIRTNWATRK 193
Score = 151 (58.2 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 47/164 (28%), Positives = 73/164 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILS---- 140
L G+ IR ++ R P KS N + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 141 --CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 249 (92.7 bits), Expect = 3.8e-21, P = 3.8e-21
Identities = 74/274 (27%), Positives = 127/274 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G + K+V V Q++DT S +V+V +LS T ED++ +F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K K
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KS 180
Query: 291 QFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-- 341
+E N K E ++ +N +Y + + ++ ++Q FSPFG I +V D
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
S + + + P + NG M+ ++P
Sbjct: 241 SFVRQTQSSAPWMGPNYGVQPPQGQNGSMLPNQP 274
Score = 240 (89.5 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 69/233 (29%), Positives = 119/233 (51%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ-------ER 193
+V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK E
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 194 DTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
+T+ +N+S +N VY ++ TE+ ++++F +G I V D
Sbjct: 185 NTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Score = 183 (69.5 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 53/181 (29%), Positives = 90/181 (49%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ K+ ++ F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 384 K 384
K
Sbjct: 174 K 174
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 178 (67.7 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 40/157 (25%), Positives = 80/157 (50%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++VG + +++ + + +FN+ G ++ + + +D T S G ++ FS +EA A
Sbjct: 16 GGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNA 75
Query: 82 LEMLN----FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L N F KP++V YS D + K +FI L + D + F +G
Sbjct: 76 LNTTNESGTFLENMNKPLQVKYS--DNEIEKMER-KLFIGMLGTS-DEDQIRILFGNYGI 131
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
I + + +G+ KGYGF+++ + ++ A+ +++G
Sbjct: 132 IEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDG 168
Score = 173 (66.0 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 50/206 (24%), Positives = 99/206 (48%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFV 248
+Q++ + N+ V+V ++ S EE + + F ++G I +++D SK F+
Sbjct: 5 QQQQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFI 64
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F ++A A+ N G + + L++K + N E ++ L
Sbjct: 65 TFSTKEEADNALNTTNES---------GTFLENMNKPLQVK--YSDNEIEKMER----KL 109
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
+I L S D+++++ LF +G I ++R+ G +G GF+ +ST +E+ AL E++G
Sbjct: 110 FIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDG 168
Query: 369 KMVV---SKPLYVALAQRKEDRRARL 391
K + + P+ V A + +R +L
Sbjct: 169 KHTLPGSNLPIIVKFADTERQKRKKL 194
Score = 134 (52.2 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 31/97 (31%), Positives = 55/97 (56%)
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-SRGS 348
+Q +Q ++ + +L+I L + DE+LKQLF+P+G++ S KV D + S+
Sbjct: 271 NQQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCF 330
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
GFV++ + A A+ E+NG+ + K L V + K+
Sbjct: 331 GFVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQ 367
Score = 133 (51.9 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 30/109 (27%), Positives = 63/109 (57%)
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GM+ ++ ++Q++ + N+S ++++ L + +E+L++ F YG + S+
Sbjct: 260 GMMQGNQAFDYNQQQQQQQQQQQPNESN--DLFIYYLPFTYGDEELKQLFAPYGNVISSK 317
Query: 234 VMRDGDGK-SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
V D + + SKCFGFV+++N+ A A++ LNG+ + K+ V ++K
Sbjct: 318 VFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREK 366
Score = 133 (51.9 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAI 169
+ ++FI L + L F+ +GN++S KV D N Q SK +GFV +DN +SA AI
Sbjct: 286 SNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAI 345
Query: 170 EKLNGMLLNDKQVYVGHFLRKQE 192
++LNG + K++ V +F R+++
Sbjct: 346 QELNGRAIEGKKLKV-NFKREKQ 367
Score = 80 (33.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++G L + D Q+ LF G + + + R+ + GYG++ +S E+ AL +
Sbjct: 109 LFIGMLGTSDED-QIRILFGNYGIIEDLNIVREKDGKPK-GYGFIKYSTRDESENALREI 166
Query: 86 N--FT-PLNGKPIRVMYSHRDPSLRKSGAGN 113
+ T P + PI V ++ + RK GN
Sbjct: 167 DGKHTLPGSNLPIIVKFADTERQKRKKLLGN 197
Score = 47 (21.6 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 161 NEESAQKAIEKLNGML----LNDKQVYVGH------FLRKQERDTEINKSKFTNVYVKNL 210
NEE + K +L + DK+ V F K+E D +N + + +++N+
Sbjct: 30 NEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTTNESGTFLENM 89
Query: 211 SE 212
++
Sbjct: 90 NK 91
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 260 (96.6 bits), Expect = 5.9e-21, P = 5.9e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 125
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 126 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 185
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 186 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 243
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 244 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 281
Score = 218 (81.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 124
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 125 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 184
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 185 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 244
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 245 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 292
Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 115
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 116 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 175
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 176 GQWLGGRQIRTNWATRK 192
Score = 154 (59.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 49/165 (29%), Positives = 75/165 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAFGNILS--- 140
L G+ IR ++ R P KS N K L + ++ + + G I S
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 233
Query: 141 ---CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 234 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 278
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 260 (96.6 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 126
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 218 (81.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 116
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 177 GQWLGGRQIRTNWATRK 193
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 49/165 (29%), Positives = 75/165 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAFGNILS--- 140
L G+ IR ++ R P KS N K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 141 ---CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 260 (96.6 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 126
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 218 (81.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 116
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 177 GQWLGGRQIRTNWATRK 193
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 49/165 (29%), Positives = 75/165 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAFGNILS--- 140
L G+ IR ++ R P KS N K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 141 ---CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 260 (96.6 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 81/283 (28%), Positives = 135/283 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD------LNGQ----------SKGYGFV 157
+++ NL + + + FS G SCK+ T+ +N + Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTT 215
+F A A+ +NG + K+V V Q++DT S +V+V +LS T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEIT 126
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-- 272
ED++ +F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ ++
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 273 --WYVGKAQK-KSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
W K KS +E K +FE + +++ K +Y + + D+ ++Q FSP
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
FG I +V + +G FV FST E A+ A++ +NG +
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 218 (81.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAI 123
Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 124 DHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 183 YVGHFLRK-------QERDTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEY 226
RK QE +T+ +N+S N VY ++ T++ ++++F +
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK--EWYVGK 277
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRDGDGK--SKCFGF-------------V 248
+YV NLS TE + + F + G S ++ D + + GF V
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F DAA A+ A+NG+K KE V A S ++ K+ ++ F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HV 116
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMN 367
++ +L I E +K F+PFG I+ +V++D +G S+G GFV+F +A A++ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 368 GKMVVSKPLYVALAQRK 384
G+ + + + A RK
Sbjct: 177 GQWLGGRQIRTNWATRK 193
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 49/165 (29%), Positives = 75/165 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAFGNILS--- 140
L G+ IR ++ R P KS N K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 141 ---CKVATDLNGQ--------SKGYGFVQFDNEESAQKAIEKLNG 174
+ GQ KGY FV+F ESA AI +NG
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 260 (96.6 bits), Expect = 9.4e-21, P = 9.4e-21
Identities = 73/262 (27%), Positives = 135/262 (51%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEK 171
+++I +L +D L F G ++S KV + GQS+GYGF++F + +A+ ++
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 172 LNGMLL-NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE-YGTI 229
NG L+ N +Q + ++ + + ++ T ++V +L+ T+ LQ++F Y ++
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHT-IFVGDLAADVTDYILQETFKSVYSSV 203
Query: 230 TSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
A V+ D G+SK +GFV F + + RA+ +NG + +G A K
Sbjct: 204 RGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQ 263
Query: 289 K--HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
K +Q Q + +D +++ LD ++ +E L+Q+FSP+G + K++ +G +
Sbjct: 264 KATYQNPQATQGESDP-NNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---AG--K 317
Query: 347 GSGFVAFSTPEEASRALLEMNG 368
GFV F T A +AL +NG
Sbjct: 318 RCGFVQFGTRASAEQALSSLNG 339
Score = 219 (82.2 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 75/280 (26%), Positives = 136/280 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SL++GDL+ + ++ L F G++VS +V R+ T +S GYG++ F + A L+
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 85 LNFT--PLNGKPIRVMYSHRDPSLRK--SGAGNIFIKNLDKAIDHKALHDTF-SAFGNIL 139
N T P + R+ ++ R+ S IF+ +L + L +TF S + ++
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVR 204
Query: 140 SCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
KV TD + G+SKGYGFV+F +E +A+ ++NG+L + + + +G K+ T
Sbjct: 205 GAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTP-Q 263
Query: 199 KSKFTNVYV-KNLSE--STT--EEDLQKSFGE------YGTITSAVVMRDGDGKSKCFGF 247
K+ + N + S+ +TT L + E + V ++ GK +C GF
Sbjct: 264 KATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGK-RC-GF 321
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V F A +A+ +LNG + + + + S ++ +
Sbjct: 322 VQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTD 361
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 49/191 (25%), Positives = 87/191 (45%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
N ++ ++++ +L E L F G + SA V+R+ G+S+ +GF+ F S A
Sbjct: 79 NPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFR-SHAA 137
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A + + Y G E+ + E D +++ +L
Sbjct: 138 AETI----------LQTYNGTLMPNVEQNFRMNWA-SLGAGERRDDSAEHTIFVGDLAAD 186
Query: 317 IDDEKLKQLF-SPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ D L++ F S + S+ KV+ D +G S+G GFV F+ E RA+ EMNG + ++
Sbjct: 187 VTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTR 246
Query: 375 PLYVALAQRKE 385
P+ + A K+
Sbjct: 247 PMRIGPAANKK 257
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 158 (60.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 63/233 (27%), Positives = 109/233 (46%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN--GQ--SKGYGFVQFDNEESAQKAI 169
+FIKNL+ + L FS G + SC ++ N G S G+GFV++ E AQKA+
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKAL 751
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTE--INKSKF---------TNVYVKNLSESTTEED 218
++L G +++ ++ V R ER T+ +N + T ++V+ +
Sbjct: 752 KQLQGHVVDGHKLEV----RISERATKSALNSGRHKHSPRRQTDTKIWVRVCPFQGDSRE 807
Query: 219 LQKSFGEYGTITSAVVMRD--GDGKSKCFGFVNFENSDDAARAVEAL-NGKKFDDKEWYV 275
L++ F +G + + + + G G + FGFV+F DA RA AL + + +
Sbjct: 808 LKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 867
Query: 276 GKAQKKSERELE-LKHQFEQNMKEAADKFQGANL--YIKNLDDSIDDEKLKQL 325
A SE L L+ + ++ E K + L ++ L+DS DD + + L
Sbjct: 868 EWAD--SEVSLPALRRKTAEHFHEPPKKKRSVVLDEILEQLEDSEDDGEAQTL 918
Score = 155 (59.6 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 44/179 (24%), Positives = 87/179 (48%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD----GDGKSKCF 245
++E + E +++KNL+ TTEE L+ F + G + S + + G S F
Sbjct: 677 EEEEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGF 736
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFV + + A +A++ L G D + V +++ ++ L + + + + D
Sbjct: 737 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKSALN-SGRHKHSPRRQTD---- 791
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS--RGSGFVAFSTPEEASRA 362
++++ D +LK++F+ FG + + ++ + +G RG GFV F T ++A RA
Sbjct: 792 TKIWVRVCPFQGDSRELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRA 850
Score = 149 (57.5 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 32/101 (31%), Positives = 59/101 (58%)
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR--DPSG- 343
+++ + E+ +E + G L+IKNL+ +E LK +FS G++ SC + + + +G
Sbjct: 671 KMEEEEEEEEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGA 730
Query: 344 -ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+S G GFV + PE+A +AL ++ G +V L V +++R
Sbjct: 731 LLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 771
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 38/164 (23%), Positives = 79/164 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR---SLGYGYVNFSNAQEAARA 81
+L++ +L + T+ L +F+++G V S + + + S+G+G+V + ++A +A
Sbjct: 691 TLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKA 750
Query: 82 LEMLNFTPLNGKPIRVMYSHRDP-----------SLRKSGAGNIFIKNLDKAIDHKALHD 130
L+ L ++G + V S R S R+ I+++ D + L +
Sbjct: 751 LKQLQGHVVDGHKLEVRISERATKSALNSGRHKHSPRRQTDTKIWVRVCPFQGDSRELKE 810
Query: 131 TFSAFGNILSCKVATDLNGQS--KGYGFVQFDNEESAQKAIEKL 172
F+ FG + + ++ L G +G+GFV F ++ A++A L
Sbjct: 811 IFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNAL 854
Score = 121 (47.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 38/161 (23%), Positives = 79/161 (49%)
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAV----EALNGKK---FDDKEWYVGKAQKKSEREL 286
++R+ G + FV+F + ++ +A+ E + G+ F ++ V KA K+ +
Sbjct: 285 IVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAKP 344
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
++ +E D L+++NL + +E L++LFS +G ++ D +
Sbjct: 345 WQGRTLGEH-EEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKP 403
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
+G FV F PE A +A E++G++ + L+V + K++
Sbjct: 404 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 444
Score = 120 (47.3 bits), Expect = 0.00070, P = 0.00070
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
+ L +KNL + + +E+ +QLF+ FG++T C + G R GF+ F + EEA AL
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 366 MNGKMV 371
N +
Sbjct: 62 FNKSFI 67
Score = 111 (44.1 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 34/131 (25%), Positives = 62/131 (47%)
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
L N + + G L + E + ++ S ++V+NL +++EEDL+K F YG ++
Sbjct: 338 LKNGAKPWQGRTLGEHEEEEDLADSG--RLFVRNLPYTSSEEDLEKLFSRYGPVSELHYP 395
Query: 236 RDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV--GKAQKKSERELELKHQF 292
D K K F FV F + A +A ++G+ F + +V +K++ +
Sbjct: 396 IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDANAPESS 455
Query: 293 E-QNMKEAADK 302
+ KE+ DK
Sbjct: 456 SYKKKKESKDK 466
Score = 108 (43.1 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ +KNL + + F+AFG + C + +G+ + +GF+ F +EE AQ A+ N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 174 GMLLNDKQVYV 184
++ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 104 (41.7 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
+ + VKNL EE ++ F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 263 LNGKKFDD 270
N K F D
Sbjct: 62 FN-KSFID 68
Score = 103 (41.3 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 40/166 (24%), Positives = 72/166 (43%)
Query: 89 PL-NG-KPI--RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
PL NG KP R + H + + +G +F++NL + L FS +G +
Sbjct: 337 PLKNGAKPWQGRTLGEHEEEE-DLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYP 395
Query: 145 TD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D L + KG+ FV F E A KA +++G + + ++V K+E + N + +
Sbjct: 396 IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDANAPESS 455
Query: 204 NVYVKNLSE----STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ K S+ S++ + F + A+ + KS+ F
Sbjct: 456 SYKKKKESKDKANSSSSHNWNTLFMGPNAVADAIAQKYSATKSQVF 501
Score = 75 (31.5 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
++ ++ + +G GY FV F +EE +KA+ K N + + Y+ F +ER+ +
Sbjct: 281 VAIRIVRNAHGNKTGYVFVDFSSEEEVRKAL-KCNREYMGGR--YIEVF---RERNIPVA 334
Query: 199 KSKFTNVYV----KNLSESTTEEDLQKS 222
K+ N + L E EEDL S
Sbjct: 335 KAPLKNGAKPWQGRTLGEHEEEEDLADS 362
Score = 69 (29.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+V +L ++ L LF++ G V + D T++ G+ +V F + A +A +
Sbjct: 365 LFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 424
Query: 86 NFTPLNGKPIRVMYS 100
+ G+ + V+ S
Sbjct: 425 DGQVFQGRMLHVLPS 439
Score = 64 (27.6 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLR--- 107
V++R+ R+ ++ GY +V+FS+ +E +AL+ N + G+ I V P +
Sbjct: 281 VAIRIVRNAHGNKT-GYVFVDFSSEEEVRKALKC-NREYMGGRYIEVFRERNIPVAKAPL 338
Query: 108 KSGA 111
K+GA
Sbjct: 339 KNGA 342
Score = 57 (25.1 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
L V +L + + + LF G + S++ +D R+ +G++ F + +EA AL
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEAQTALN 60
Query: 84 MLNFTPLNGKPIRVMY--SHRDPS 105
N + ++ I V + + DP+
Sbjct: 61 HFNKSFIDTSRITVEFCKAFGDPT 84
>SGD|S000001057 [details] [associations]
symbol:MIP6 "Putative RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005643 "nuclear pore" evidence=IPI]
[GO:0006406 "mRNA export from nucleus" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001057 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723
GO:GO:0006406 EMBL:U10400 PIR:S46788 RefSeq:NP_011879.1
ProteinModelPortal:P38760 SMR:P38760 DIP:DIP-6647N IntAct:P38760
MINT:MINT-644353 STRING:P38760 EnsemblFungi:YHR015W GeneID:856408
KEGG:sce:YHR015W CYGD:YHR015w eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
NextBio:981953 Genevestigator:P38760 GermOnline:YHR015W
Uniprot:P38760
Length = 659
Score = 265 (98.3 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 60/183 (32%), Positives = 99/183 (54%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SL++G+L++ VT+ L +F + S +VCRD T++SLGYGY+NF + +A A
Sbjct: 110 TNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESAR 169
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
+ N+T G+ +++M S ++ RK+ N+F NL + + ++ + +GN+L
Sbjct: 170 KEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVL 229
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HFLRKQERDTEIN 198
SC L + K GFV FDN+ SA+ I+K N ++ G HF ++ E
Sbjct: 230 SC-----LLERRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVRTRPEFT 284
Query: 199 KSK 201
K K
Sbjct: 285 KRK 287
Score = 169 (64.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 66/295 (22%), Positives = 119/295 (40%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESA 165
+ S ++FI NL + + L F + + S KV D L +S GYG++ F ++ A
Sbjct: 106 KTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDA 165
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL---SESTTEEDLQKS 222
+ A ++ N + ++V + ++T K+ TNV+ NL + T
Sbjct: 166 ESARKEFNYTVFFGQEVKI----MPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLI 221
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD----------DKE 272
EYG + S ++ R K GFV F+N A ++ N ++F DKE
Sbjct: 222 MIEYGNVLSCLLER-----RKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKE 276
Query: 273 WYVGKAQKKSERELELKHQFEQNM---KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329
K ++ + E + +D + + +KNL E++ FS
Sbjct: 277 VRTRPEFTKRKKMIGSDIVIEDELLASNNLSDNARSKTILVKNLPSDTTQEEVLDYFSTI 336
Query: 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
G I S + + FV + EE+ +A +N + + ++V + K
Sbjct: 337 GPIKSVFISEKQANTPH-KAFVTYKNEEESKKAQKCLNKTIFKNHTIWVGPGKDK 390
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 173 (66.0 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 52/182 (28%), Positives = 87/182 (47%)
Query: 89 PLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-L 147
P+NG + + +++ A +FI + + ++ K L F FG I V D
Sbjct: 114 PMNGSE-SISIHPENGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRY 172
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF--LRKQERDTEINKSKFTNV 205
G KG F+ + ESA KA N L++++ G ++ + D+E ++ + +
Sbjct: 173 TGMHKGCAFLTYCARESAIKA---QNA--LHEQKTLPGMTRPIQVKPADSE-SRGEDRKL 226
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
+V L++ TEED+ + F YG I V+R DG SK FV F +A A+ AL+G
Sbjct: 227 FVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHG 286
Query: 266 KK 267
+
Sbjct: 287 SQ 288
Score = 148 (57.2 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 43/152 (28%), Positives = 70/152 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L++G + N+ + L LF Q G++ + V +D T G ++ + +A +A AL
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L+K + ++ F +G I C
Sbjct: 198 HEQKTLPGMTRPIQVKPA--DSESRGEDR-KLFVGMLNKQQTEEDVYRLFEPYGVIEECT 254
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
V +G SKG FV+F AQ AI L+G
Sbjct: 255 VLRGPDGNSKGCAFVKFSTHAEAQSAISALHG 286
Score = 146 (56.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 45/169 (26%), Positives = 81/169 (47%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+++ + + E+DL+ F ++G I V++D G K F+ + + A +A AL
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K G R +++K ++ E D+ L++ L+ +E +
Sbjct: 198 HEQKT-----LPGMT-----RPIQVKPADSESRGE--DR----KLFVGMLNKQQTEEDVY 241
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
+LF P+G I C V+R P G S+G FV FST EA A+ ++G +
Sbjct: 242 RLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTM 290
Score = 145 (56.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 34/97 (35%), Positives = 51/97 (52%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFV 351
+Q + + +G NL+I +L D +L Q+F PFG++ S KV D + S+ GFV
Sbjct: 499 QQQQQREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFV 558
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+F P A A+ MNG + K L V L + K+ R
Sbjct: 559 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDASR 595
Score = 132 (51.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 72 FSNAQEAARALEMLNFTPLNG---KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
F+ Q+ TP+ +P +V+ + N+FI +L + L
Sbjct: 469 FTGVQQYTAIYPATTLTPIGQSLPQPPQVIQQQQQREGEGPEGCNLFIYHLPQEFGDNEL 528
Query: 129 HDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
F FG ++S KV D QSK +GFV FDN SAQ AI+ +NG + K++ V
Sbjct: 529 MQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 585
Score = 126 (49.4 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFV 248
+Q++ E + N+++ +L + + +L + F +GT+ S+ V D +SKCFGFV
Sbjct: 499 QQQQQREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFV 558
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVG-KAQKKSER 284
+F+N A A++A+NG + K V K K + R
Sbjct: 559 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDASR 595
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 244 (91.0 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 75/274 (27%), Positives = 125/274 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ NL + + + FS G +CK+ D G Y FV+F A A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 174 GMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
G + K+V V Q++DT S +V+V +LS T ED++ +F +G I+
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 119
Query: 232 AVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
A V++D GKSK +GFV+F N DA A++ + G+ ++ A +K K
Sbjct: 120 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP---KS 176
Query: 291 QFEQNMK-----EAADKFQGAN--LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-- 341
+E N K E + N +Y + + ++ ++Q FSPFG I +V D
Sbjct: 177 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 236
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
S I + + P + NG M+ ++P
Sbjct: 237 SFIRQTQSSAPWMGPNYSVPPPQGQNGGMLPNQP 270
Score = 232 (86.7 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 68/233 (29%), Positives = 118/233 (50%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + GK ++V ++ PS +K N +F+ +L I + + F+ FG I
Sbjct: 62 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 120
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ-------ER 193
+V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK E
Sbjct: 121 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 180
Query: 194 DTE-------INKSKFTN--VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
+T+ +++S N VY ++ TE+ ++++F +G I V D
Sbjct: 181 NTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 233
Score = 183 (69.5 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 53/181 (29%), Positives = 90/181 (49%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV NLS TE + + F + G + ++ D G + FV F AA A+ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G+K KE V A S ++ K+ ++ F ++++ +L I E +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 109
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+PFG I+ +V++D +G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 110 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 169
Query: 384 K 384
K
Sbjct: 170 K 170
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 194 (73.4 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 43/94 (45%), Positives = 63/94 (67%)
Query: 307 NLYIKNLDDSI--DDEKLKQLFSPFGSITSCKVMRDPSG-ISRGSGFVAFSTPEEASRAL 363
NL++KNLDD+I + ++L++LFS FG I SC + PS IS+G GFV+FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+NG + K L+V A+++EDR+ RL Q
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 156 (60.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 36/97 (37%), Positives = 60/97 (61%)
Query: 113 NIFIKNLDKAI--DHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAI 169
N+F+KNLD I + + L + FS FG I SC +A+ + + SKGYGFV F + A +AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVY 206
LNG+L K+++V + ++++R ++ + F+ Y
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLS-AIFSQSY 515
Score = 129 (50.5 bits), Expect = 8.8e-13, Sum P(3) = 8.8e-13
Identities = 30/95 (31%), Positives = 53/95 (55%)
Query: 204 NVYVKNLSESTT--EEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAV 260
N++VKNL ++ + L++ F ++G I S + + SK +GFV+F + +A +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
LNG F K +V A+K+ +R+ L F Q+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQS 514
Score = 98 (39.6 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 33/141 (23%), Positives = 60/141 (42%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM-----RDGDGKSKC-F 245
E++ K ++YV NL + DL + F +G + ++ + D KS F
Sbjct: 9 EKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLF 68
Query: 246 GFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQK-KSERELELKHQFEQNMKEAAD 301
F+ FEN A A+ +LNG F K Y ++ K++ E + N ++A
Sbjct: 69 AFITFENKCSADNAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKI 128
Query: 302 KFQGANLYIKNLDDSIDDEKL 322
+F Y K ++ + ++
Sbjct: 129 RFSKIEKYTKETRPTVSEVRV 149
Score = 96 (38.9 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQ-----VVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
S+YVG+L + S L++LF G ++S + + ++ + ++ F N A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 80 RALEMLNFTPLNGKPIRVMYSH---RDPSLRKSGAGNIFIKNLDKA 122
A+ LN + G ++V Y+H R + ++G I N +KA
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKA 126
Score = 88 (36.0 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGN-----ILSCKVATDLNGQSKG-YGFVQFDNEESAQ 166
+I++ NL LH+ F FGN +LS K + +S + F+ F+N+ SA
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 167 KAIEKLNGMLL--NDKQVYVGHFLRKQERDTE 196
AI LNG N +V H + + + E
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHIVERYKNKLE 112
Score = 61 (26.5 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I I NL + L++ FS G+IL + +N Y V ES + IEK +
Sbjct: 272 IGILNLPLKVSPVELYNEFSNHGHILGVAINQSINEDMTHYAEVAVSTYESCIEIIEKFH 331
Query: 174 GM 175
+
Sbjct: 332 AI 333
Score = 41 (19.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 12/68 (17%), Positives = 30/68 (44%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L V+ +LY+ F+ G ++ V + + ++ + Y V S + +E +
Sbjct: 276 NLPLKVSPVELYNEFSNHGHILGVAINQSINEDMT-HYAEVAVSTYESCIEIIEKFHAIA 334
Query: 90 LNGKPIRV 97
G +++
Sbjct: 335 YEGSILQL 342
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 178 (67.7 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 47/146 (32%), Positives = 71/146 (48%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VG + ++ +SQL ++F + G V S+ V RD +T S G +V F A +A + L
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418
Query: 86 -NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N LNG + D R +F+ L+K ++ + F G I C V
Sbjct: 419 HNVKTLNGMYHPIQMKPADSENRNER--KLFVGMLNKKLNENDVRKLFEVHGAIEECTVL 476
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIE 170
D NGQSKG FV F + +A AI+
Sbjct: 477 RDQNGQSKGCAFVTFATKHAAISAIK 502
Score = 164 (62.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 57/206 (27%), Positives = 98/206 (47%)
Query: 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYG 155
V Y ++P +F+ + K++D L + F +G + S V D G SKG
Sbjct: 345 VTYGEKEPDPDNI---KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 401
Query: 156 FVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
FV F +A KA + L+ + LN +Y H ++ + D+E N+++ ++V L++
Sbjct: 402 FVTFYTRHAALKAQDALHNVKTLNG--MY--HPIQMKPADSE-NRNE-RKLFVGMLNKKL 455
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA-LNGKKFDD--- 270
E D++K F +G I V+RD +G+SK FV F A A++ L+ K +
Sbjct: 456 NENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCT 515
Query: 271 KEWYVGKAQKKSERELELKHQFEQNM 296
V A + E+E + Q + N+
Sbjct: 516 SPLVVKFADTQKEKEQKKIQQIQANL 541
Score = 139 (54.0 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+G NL+I +L D L F PFG++ S KV D + +S+ GFV+F P+ A A
Sbjct: 724 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 783
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDR 387
+ MNG V +K L V L + K+ +
Sbjct: 784 IKAMNGFQVGTKRLKVQLKKPKDSK 808
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
N+FI +L + L TF FGN++S KV D SK +GFV FDN +SAQ AI+
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 787 MNGFQVGTKRLKV 799
Score = 131 (51.2 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ DL +F +G + SA V D SKCFGFV+F+N D A A++A
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 263 LNGKKFDDKEWYVGKAQKKSER 284
+NG + K V + K +
Sbjct: 787 MNGFQVGTKRLKVQLKKPKDSK 808
Score = 120 (47.3 bits), Expect = 0.00060, P = 0.00060
Identities = 52/193 (26%), Positives = 84/193 (43%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
++V + +S E L++ F EYG + S V+RD K G AL
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRD-----KATGISKGCCFVTFYTRHAAL- 412
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K D V K +++K +N E L++ L+ +++ +++
Sbjct: 413 --KAQDALHNV-KTLNGMYHPIQMKPADSENRNER-------KLFVGMLNKKLNENDVRK 462
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL---LEMNGKMV-VSKPLYVAL 380
LF G+I C V+RD +G S+G FV F+T A A+ L N M + PL V
Sbjct: 463 LFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKF 522
Query: 381 AQ-RKEDRRARLQ 392
A +KE + ++Q
Sbjct: 523 ADTQKEKEQKKIQ 535
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 224 (83.9 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 51/163 (31%), Positives = 89/163 (54%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG L+A VT+ L +F G V +V++ D + + YG+V + + A RA++
Sbjct: 86 ALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAK-GYNYGFVEYDDPGAADRAMQT 144
Query: 85 LNFTPLNGKPIRVMYSHRDP-SLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILS 140
LN ++ IRV ++++ S K N IF+ +L ++ + L FS FG++
Sbjct: 145 LNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSE 204
Query: 141 CKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+V D+ G+S+GYGFV F + A+KA+ ++G L + +
Sbjct: 205 ARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Score = 213 (80.0 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 42/154 (27%), Positives = 86/154 (55%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+++ LD + L F G++ + K+ D N + YGFV++D+ +A +A++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
G ++ ++ V + T+ + S +++V +LS +E L ++F +G+++ A
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 234 VMRD-GDGKSKCFGFVNFENSDDAARAVEALNGK 266
VM D G+S+ +GFV F + DA +A+ +++G+
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGE 240
Score = 203 (76.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 53/181 (29%), Positives = 97/181 (53%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV L TE+ L++ F G + + ++ D + K +GFV +++ A RA++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G++ E V A + + + ++ ++ F ++++ +L + ++DE L Q
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATK---------EDTSNHF---HIFVGDLSNEVNDEVLTQ 194
Query: 325 LFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FGS++ +VM D +G SRG GFVAF +A +AL M+G+ + S+ + A +
Sbjct: 195 AFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 384 K 384
K
Sbjct: 255 K 255
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL V D L F+ G V RV D+ T RS GYG+V F + +A +AL +
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 86 NFTPLNGKPIRVMYSHR--DPSLRKSGA 111
+ L + IR ++++ PS+ + A
Sbjct: 238 DGEWLGSRAIRCNWANQKGQPSIAQQQA 265
Score = 78 (32.5 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
T YV NL+ TT D+ F +G + + D + F F+ ++ ++AA+A+
Sbjct: 302 TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICG 356
Query: 263 LNG 265
LNG
Sbjct: 357 LNG 359
Score = 70 (29.7 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+ NL + LF FG + + D RG F+ + E A++A+ +NG
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNG 359
Query: 369 KMVVSKPL 376
V +PL
Sbjct: 360 YNVNGRPL 367
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 240 (89.5 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 56/139 (40%), Positives = 82/139 (58%)
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
+D T + GYG+V F + ++A A++++N L GKPIRV + GA NIFI
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFI 61
Query: 117 KNLDKAIDHKALHDTFSAFGNILSC-KVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNG 174
NLD ID K L+DTFSAFG IL K+ D + G SKGY F+ F + +++ AIE +NG
Sbjct: 62 GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 121
Query: 175 MLLNDKQVYVGHFLRKQER 193
L ++ + V + +K +
Sbjct: 122 QYLCNRPITVSYAFKKDSK 140
Score = 176 (67.0 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVY 206
+ GQ +GYGFV+F +EE A AI+ +N + L K + V ++ ++ N++
Sbjct: 6 VTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVG----ANIF 60
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALN 264
+ NL E+ L +F +G I +MRD D G SK + F+NF + D + A+EA+N
Sbjct: 61 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 120
Query: 265 GKKFDDKEWYVGKAQKKSER 284
G+ ++ V A KK +
Sbjct: 121 GQYLCNRPITVSYAFKKDSK 140
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 49/153 (32%), Positives = 83/153 (54%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
G+ + +GFV F + +DA A++ +N K K V KA + + L++
Sbjct: 8 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-KNLDV----------- 55
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPE 357
GAN++I NLD ID++ L FS FG I K+MRDP +G S+G F+ F++ +
Sbjct: 56 -----GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD 110
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ A+ MNG+ + ++P+ V+ A +K+ + R
Sbjct: 111 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 143
Score = 127 (49.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++++G+L+ + + LYD F+ G ++ ++ RD T S GY ++NF++ + A+E
Sbjct: 58 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117
Query: 84 MLNFTPLNGKPIRVMYSHRDPS 105
+N L +PI V Y+ + S
Sbjct: 118 AMNGQYLCNRPITVSYAFKKDS 139
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 171 (65.3 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 47/165 (28%), Positives = 81/165 (49%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +FI + + +D K L F FG I V D G KG F+ + ES
Sbjct: 1 MKEPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARES 60
Query: 165 AQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A KA L+ +++ G ++ + D+E ++ + ++V L + T+ED+++
Sbjct: 61 ALKAQSALH-----EQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLGKQQTDEDVRRM 114
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
F +G I V+R DG SK FV F+ +A A+ AL+G +
Sbjct: 115 FETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSR 159
Score = 155 (59.6 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 44/152 (28%), Positives = 69/152 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L++G + N+ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L K + + F FGNI C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFETFGNIDECT 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
V +G SKG FV+F AQ AI L+G
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 49/190 (25%), Positives = 88/190 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+++ + + E+DL+ F ++G I V++D G K F+ + + A +A AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K R +++K ++ E D+ L++ L DE ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
++F FG+I C V+R P G S+G FV F T EA A+ ++G + S L V
Sbjct: 113 RMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 381 AQRKEDRRAR 390
A +++R R
Sbjct: 173 ADTEKERGLR 182
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 41/119 (34%), Positives = 57/119 (47%)
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHK 126
G +++ A AA L FT I + R+ G NIFI +L +
Sbjct: 334 GMQHYTAAYPAAYGLVSPAFT--QPPAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTDS 391
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+ F FGN++S KV D QSK +GFV FDN SAQ AI+ +NG + K++ V
Sbjct: 392 EILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKV 450
Score = 137 (53.3 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
+G N++I +L D ++ Q+F PFG++ S KV D + S+ GFV+F P A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K+ R
Sbjct: 435 IQSMNGFQIGMKRLKVQLKRPKDANR 460
Score = 122 (48.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A+++
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 438 MNGFQIGMKRLKVQLKRPKDANR 460
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 171 (65.3 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 47/165 (28%), Positives = 81/165 (49%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +FI + + +D K L F FG I V D G KG F+ + ES
Sbjct: 1 MKEPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARES 60
Query: 165 AQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A KA L+ +++ G ++ + D+E ++ + ++V L + T+ED+++
Sbjct: 61 ALKAQSALH-----EQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLGKQQTDEDVRRM 114
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
F +G I V+R DG SK FV F+ +A A+ AL+G +
Sbjct: 115 FEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSR 159
Score = 162 (62.1 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 50/190 (26%), Positives = 89/190 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+++ + + E+DL+ F ++G I V++D G K F+ + + A +A AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K R +++K ++ E D+ L++ L DE ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
++F PFG+I C V+R P G S+G FV F T EA A+ ++G + S L V
Sbjct: 113 RMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 381 AQRKEDRRAR 390
A +++R R
Sbjct: 173 ADTEKERGLR 182
Score = 154 (59.3 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 44/152 (28%), Positives = 69/152 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L++G + N+ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L K + + F FGNI C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFEPFGNIDECT 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
V +G SKG FV+F AQ AI L+G
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/121 (33%), Positives = 60/121 (49%)
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH--RDPSLRKSGAG-NIFIKNLDKAID 124
G +++ A AA L FT +P ++ + R+ G NIFI +L +
Sbjct: 334 GMQHYTAAYPAAYGLVSPAFT----QPPAILQQQPPQQQQQREGPEGCNIFIYHLPQEFT 389
Query: 125 HKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
+ F FGN++S KV D QSK +GFV FDN SAQ AI+ +NG + K++
Sbjct: 390 DSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLK 449
Query: 184 V 184
V
Sbjct: 450 V 450
Score = 136 (52.9 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
+G N++I +L D ++ Q+F PFG++ S KV D + S+ GFV+F P A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K+ R
Sbjct: 435 IQAMNGFQIGMKRLKVQLKRPKDANR 460
Score = 125 (49.1 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 438 MNGFQIGMKRLKVQLKRPKDANR 460
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 252 (93.8 bits), Expect = 7.5e-20, P = 7.5e-20
Identities = 67/266 (25%), Positives = 131/266 (49%)
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQK 167
S +++I +L + +D + F+ G S KV + L GQS+GYGF++F + A++
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 168 AIEKLNGMLL-NDKQVYVGHFLRKQERDTEIN-KSKFTNVYVKNLSESTTEEDLQKSFGE 225
++ NG + + +Q + ++ + + + ++V +L+ T+ L +F
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKN 176
Query: 226 -YGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
YG++ A V+ D G+SK +GFV F + ++ RA+ +NG+ + +G A K+
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNA 236
Query: 284 RELE-LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
++ +Q Q + +++ LD ++ D++LK +F FG + K+ P
Sbjct: 237 LPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---PP 293
Query: 343 GISRGSGFVAFSTPEEASRALLEMNG 368
G + GFV ++ A AL +NG
Sbjct: 294 G--KRCGFVQYANKASAEHALSVLNG 317
Score = 213 (80.0 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 65/259 (25%), Positives = 119/259 (45%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SL++GDL+ + ++ + +F Q G+ S +V R+ T +S GYG++ F + A R L+
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 85 LNFTPLNG--KPIRVMYSHR---DPSLRKSGAGN-IFIKNLDKAIDHKALHDTF-SAFGN 137
N P+ + R+ ++ + + G + IF+ +L + L DTF + +G+
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 138 ILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+ KV D G+SKGYGFV+F +E +A+ ++NG + + + +G K
Sbjct: 181 VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNA--LP 238
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS----AVVMRDGD------GKSKCFG 246
+ + + N N ++ G +T ++ + G+ K G
Sbjct: 239 MQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG 298
Query: 247 FVNFENSDDAARAVEALNG 265
FV + N A A+ LNG
Sbjct: 299 FVQYANKASAEHALSVLNG 317
Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLF-NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+++VGDL VTD L D F N G V +V D +T RS GYG+V F++ E RA+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 84 MLNFTPLNGKPIRV-MYSHRD-----PSLRKS----GAGN-------IFIKNLDKAIDHK 126
+N + +P+R+ ++++ P++ ++ AG+ IF+ LD +
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV-- 184
L F FG +L K+ K GFVQ+ N+ SA+ A+ LNG L + + +
Sbjct: 275 ELKSIFGQFGELLHVKIPP-----GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSW 329
Query: 185 GHFLRKQERDTEIN 198
G KQ + N
Sbjct: 330 GRSPNKQSDQAQWN 343
Score = 160 (61.4 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 51/190 (26%), Positives = 92/190 (48%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
S ++++ +L + E + F + G TSA V+R+ G+S+ +GF+ F + A R
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 259 AVEALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
++ NG E + + AQ + + +F+ E D +++ +L
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEK-----RFQT---EGPDH----TIFVGDLAPE 164
Query: 317 IDDEKLKQLF-SPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ D L F + +GS+ KV+ D +G S+G GFV F+ E RA+ EMNG+ ++
Sbjct: 165 VTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTR 224
Query: 375 PLYVALAQRK 384
P+ + A K
Sbjct: 225 PMRIGPAANK 234
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++VG L+ANVTD +L +F Q G+++ V++ +R G+V ++N A AL
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPG---KRC---GFVQYANKASAEHALS 313
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
+LN T L G+ IR+ + R P+ + A
Sbjct: 314 VLNGTQLGGQSIRLSWG-RSPNKQSDQA 340
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 210 (79.0 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 52/166 (31%), Positives = 92/166 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++GDL+ V ++ L F+Q G++VSV+V R+ T + GYG++ F + A R L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 85 LNFTPLNGKPIRVMYSHRD-PSLRKSGAG---NIFIKNLDKAIDHKALHDTFSA-FGNIL 139
N T + G + + S +K AG +IF+ +L + L +TF + ++
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 140 SCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
KV TD + G+SKGYGFV+F E +A+ ++NG+ + + + +
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI 190
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 48/185 (25%), Positives = 87/185 (47%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+++ +L E L F + G + S V+R+ G+ + +GF+ F + A R ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG + E + S F K D ++++ +L + D L+
Sbjct: 86 NGTQMPGTE-LTFRLNWAS---------FGSGQK--VDAGPDHSIFVGDLAPDVTDYLLQ 133
Query: 324 QLFSP-FGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+ F + S+ KV+ DPS G S+G GFV F+ E +RA+ EMNG ++P+ ++ A
Sbjct: 134 ETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
Query: 382 QRKED 386
K++
Sbjct: 194 TPKKN 198
Score = 88 (36.0 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
T + V NL ++ TEE+L+K+F + G + + +K +G+V F+ A AV+
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKIPA-----TKGYGYVQFKTRPSAEEAVQR 291
Query: 263 LNGK 266
+ G+
Sbjct: 292 MQGQ 295
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 158 (60.7 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 44/165 (26%), Positives = 80/165 (48%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +F+ + + ++ K L F FG I V D G KG F+ + +S
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 165 AQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A KA L+ +++ G ++ + D+E ++ + ++V L + T+ED++K
Sbjct: 61 ALKAQSALH-----EQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLGKQQTDEDVRKM 114
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
F +GTI V+R DG SK FV F+ +A A+ L+ +
Sbjct: 115 FEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 158 (60.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 51/190 (26%), Positives = 87/190 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
++V + E+DL+ F ++G I V++D G K F+ + D A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K R +++K ++ E D+ L++ L DE ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
++F PFG+I C V+R P G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 381 AQRKEDRRAR 390
A +++R R
Sbjct: 173 ADTEKERGLR 182
Score = 145 (56.1 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-P 341
+++ + + Q +Q +E D G N++I +L D ++ Q+F PFG + S KV D
Sbjct: 310 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 366
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ S+ GFV+F P A A+ MNG + K L V L + K+ R
Sbjct: 367 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 413
Score = 138 (53.6 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 42/151 (27%), Positives = 67/151 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L+VG + ++ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L K + + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
V +G SKG FV+F AQ AI L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
NIFI +L + + F FG+++S KV D QSK +GFV FDN SAQ AI+
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 391 MNGFQIGMKRLKV 403
Score = 123 (48.4 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 391 MNGFQIGMKRLKVQLKRPKDANR 413
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 256 (95.2 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 77/267 (28%), Positives = 132/267 (49%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+V +L ++T L ++F+Q V +RV +T S G Y+ F A +ALE
Sbjct: 381 TLFVKNLPYSITQDDLREIFDQ---AVDIRVPMG-NTGTSRGIAYIEFKTEAIAEKALEE 436
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGN------IFIKNLDKAIDHKALHDTFSAFGNI 138
+ + G+ I V ++ D S R+ G G + + NL + +L S F
Sbjct: 437 AQGSDVQGRSIIVDFTG-DKS-RQGGRGAPSASKVLVVNNLAFSASEDSLQ---SVFEKA 491
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT--E 196
+S ++ + NG+ KGY FV+F+N E +++A+E N + + + + + +ER
Sbjct: 492 VSIRIPQN-NGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGGGR 550
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
N ++VK LS+ TT++ L+ SF G I + + G SK FGFV+F+N D
Sbjct: 551 GNSGPTKTLFVKGLSDDTTDQTLKDSFD--GAIAARIATDRDTGSSKGFGFVDFDNEQDC 608
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSE 283
A EA++ + D + + A+ K E
Sbjct: 609 KAAKEAMDDGEIDGNKVTLDYAKPKGE 635
Score = 244 (91.0 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 84/342 (24%), Positives = 153/342 (44%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SL++G+L N +L ++ + + +D+ + +GYV+F++ +E +ALE
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEI-QDVRLGGTKKFGYVDFASEEELQKALE- 348
Query: 85 LNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
LN L G+P+++ + + ++ A +F+KNL +I L + F +I
Sbjct: 349 LNGKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQAVDI-- 406
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+V G S+G +++F E A+KA+E+ G + + + V K + S
Sbjct: 407 -RVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPS 465
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+ V NL+ S +E+ LQ F + +I + +G+ K + FV FEN +D+ A+
Sbjct: 466 ASKVLVVNNLAFSASEDSLQSVFEKAVSIR----IPQNNGRPKGYAFVEFENVEDSKEAL 521
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E N + + + +Q ER + L++K L D D+
Sbjct: 522 ENCNNTDIEGRSIRLEYSQNDRER----------GGGGRGNSGPTKTLFVKGLSDDTTDQ 571
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
LK F G+I + +G S+G GFV F ++ A
Sbjct: 572 TLKDSFD--GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAA 611
Score = 142 (55.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 47/187 (25%), Positives = 88/187 (47%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
++++ NL+ + ++L+ + ++ + + G +K FG+V+F + ++ +A+E L
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALE-L 349
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGKK + + KA+ K + +N KE L++KNL SI + L+
Sbjct: 350 NGKKLLGQPVKLDKARSKENSQ--------ENKKER----DARTLFVKNLPYSITQDDLR 397
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
++F I +V +G SRG ++ F T A +AL E G V + + V
Sbjct: 398 EIFDQAVDI---RVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGD 454
Query: 384 KEDRRAR 390
K + R
Sbjct: 455 KSRQGGR 461
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 33/118 (27%), Positives = 67/118 (56%)
Query: 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
+++E A++K+E + K + K+A +G +L++ NL+++ D ++LK S
Sbjct: 256 EEEETPATPAKRKAETK---KEKGTPPAKKAKTDGEGFSLFLGNLNNNKDFDELKSAISK 312
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
F S ++ G ++ G+V F++ EE +AL E+NGK ++ +P+ + A+ KE+
Sbjct: 313 FFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKAL-ELNGKKLLGQPVKLDKARSKEN 369
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 158 (60.7 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 44/165 (26%), Positives = 80/165 (48%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +F+ + + ++ K L F FG I V D G KG F+ + +S
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 165 AQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A KA L+ +++ G ++ + D+E ++ + ++V L + T+ED++K
Sbjct: 61 ALKAQSALH-----EQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLGKQQTDEDVRKM 114
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
F +GTI V+R DG SK FV F+ +A A+ L+ +
Sbjct: 115 FEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 51/190 (26%), Positives = 87/190 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
++V + E+DL+ F ++G I V++D G K F+ + D A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K R +++K ++ E D+ L++ L DE ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
++F PFG+I C V+R P G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 381 AQRKEDRRAR 390
A +++R R
Sbjct: 173 ADTEKERGLR 182
Score = 145 (56.1 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-P 341
+++ + + Q +Q +E D G N++I +L D ++ Q+F PFG + S KV D
Sbjct: 360 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ S+ GFV+F P A A+ MNG + K L V L + K+ R
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 138 (53.6 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 42/151 (27%), Positives = 67/151 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L+VG + ++ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L K + + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
V +G SKG FV+F AQ AI L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
NIFI +L + + F FG+++S KV D QSK +GFV FDN SAQ AI+
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 123 (48.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 441 MNGFQIGMKRLKVQLKRPKDANR 463
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 230 (86.0 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 53/145 (36%), Positives = 84/145 (57%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG 110
V+V + +D T+ GYG+V F + ++A ++++N L GKPIRV + G
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVG 118
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KVATDLN-GQSKGYGFVQFDNEESAQKA 168
A NIFI NLD +D K L+DTFSAFG IL K+ D G+SK + F+ F + E++ A
Sbjct: 119 A-NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAA 177
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQER 193
++ +NG L ++ + V + +K +
Sbjct: 178 MDAMNGQYLCNRPISVSYAFKKDHK 202
Score = 160 (61.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 43/135 (31%), Positives = 70/135 (51%)
Query: 152 KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
+GYGFV+F +EE A I+ +N + L K + V Q+ N N+++ NL
Sbjct: 73 QGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQK-----NLDVGANIFIGNLD 127
Query: 212 ESTTEEDLQKSFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFD 269
E+ L +F +G I +MRD + GKSK F F+NF + + + A++A+NG+
Sbjct: 128 VEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLC 187
Query: 270 DKEWYVGKAQKKSER 284
++ V A KK +
Sbjct: 188 NRPISVSYAFKKDHK 202
Score = 149 (57.5 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRA 362
GAN++I NLD +D++ L FS FG I K+MRDP +G S+ F+ F++ E + A
Sbjct: 118 GANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAA 177
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ MNG+ + ++P+ V+ A +K+ + R
Sbjct: 178 MDAMNGQYLCNRPISVSYAFKKDHKGER 205
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 21/79 (26%), Positives = 47/79 (59%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++++G+L+ V + LYD F+ G ++ ++ RD T +S + ++NF++ + + A++
Sbjct: 120 NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMD 179
Query: 84 MLNFTPLNGKPIRVMYSHR 102
+N L +PI V Y+ +
Sbjct: 180 AMNGQYLCNRPISVSYAFK 198
Score = 53 (23.7 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQV 50
++Y G L+ V+++ L++LF Q G V
Sbjct: 14 TIYAGGLDDKVSETLLWELFVQAGPV 39
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 248 (92.4 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 74/310 (23%), Positives = 147/310 (47%)
Query: 89 PLNGKPIRVMYSHRDPSLRKSGAGNI---FIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
P +G+P + Y S AG I +I +L +D L + F G + KV
Sbjct: 55 PSSGQPQQQQYGGGG-SQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIR 113
Query: 146 DL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLL-NDKQVYVGHFLRKQERDTEINKSKFT 203
+ NG S+GYGF++F N +A++ ++ NG + + +Q + ++ + + +
Sbjct: 114 NKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEH 173
Query: 204 NVYVKNLSESTTEEDLQKSF-GEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVE 261
V+V +L+ T+ L ++F Y ++ A V+ D G+SK +GFV F + + RA+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELE-LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+NG+ + G A K ++ +Q Q +D +++ +D S+ ++
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDP-TNTTIFVGAVDQSVTED 292
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
LK +F FG + K+ P+G + GFV ++ A +AL +NG + + + ++
Sbjct: 293 DLKSVFGQFGELVHVKI---PAG--KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSW 347
Query: 381 AQRKEDRRAR 390
+ +++ +
Sbjct: 348 GRSPSNKQTQ 357
Score = 213 (80.0 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 67/281 (23%), Positives = 128/281 (45%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SL++GDL+ + ++ L ++F G+ + +V R+ S GYG++ F N A R L+
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 85 LNFTPL--NGKPIRVMYSHRDPSLRKSGAG---NIFIKNLDKAIDHKALHDTFSA-FGNI 138
N P+ + + R+ ++ R+ G +F+ +L + L +TF A + ++
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 139 LSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
KV D G+SKGYGFV+F +E +A+ ++NG + + + G K + +
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANK--KPLTM 258
Query: 198 NKSKFTNVYVKNLSESTTEEDL-----QKSFGE------YGTITSAVVMRDGDGKSKCFG 246
+ + N + T + +S E +G V ++ GK +C G
Sbjct: 259 QPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK-RC-G 316
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
FV + N A +A+ LNG + + + + S ++ +
Sbjct: 317 FVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQ 357
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 52/195 (26%), Positives = 93/195 (47%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+++VGDL +VTD L + F + V +V D +T RS GYG+V F++ E RA+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 84 MLN-----FTPL------NGKPIRVM---YSHRDPSLRKSGAGN--IFIKNLDKAIDHKA 127
+N P+ N KP+ + Y + + +S N IF+ +D+++
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L F FG ++ K+ K GFVQ+ N A++A+ LNG L + + +
Sbjct: 294 LKSVFGQFGELVHVKIPA-----GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Query: 188 LRKQERDTEINKSKF 202
+ T+ +++++
Sbjct: 349 RSPSNKQTQPDQAQY 363
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 158 (60.7 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 44/165 (26%), Positives = 80/165 (48%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +F+ + + ++ K L F FG I V D G KG F+ + +S
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 165 AQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A KA L+ +++ G ++ + D+E ++ + ++V L + T+ED++K
Sbjct: 61 ALKAQSALH-----EQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLGKQQTDEDVRKM 114
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
F +GTI V+R DG SK FV F+ +A A+ L+ +
Sbjct: 115 FEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 158 (60.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 51/190 (26%), Positives = 87/190 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
++V + E+DL+ F ++G I V++D G K F+ + D A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K R +++K ++ E D+ L++ L DE ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
++F PFG+I C V+R P G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 381 AQRKEDRRAR 390
A +++R R
Sbjct: 173 ADTEKERGLR 182
Score = 144 (55.7 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 38/143 (26%), Positives = 65/143 (45%)
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
+ ++ A A +L F V + ++ + + Q +Q ++ + G
Sbjct: 350 YAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQRPDGC 409
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLE 365
N++I +L D ++ Q+F PFG + S KV D + S+ GFV+F P A A+
Sbjct: 410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 469
Query: 366 MNGKMVVSKPLYVALAQRKEDRR 388
MNG + K L V L + K+ R
Sbjct: 470 MNGFQIGMKRLKVQLKRPKDANR 492
Score = 138 (53.6 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 42/151 (27%), Positives = 67/151 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L+VG + ++ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L K + + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
V +G SKG FV+F AQ AI L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESA 165
R G NIFI +L + + F FG+++S KV D QSK +GFV FDN SA
Sbjct: 405 RPDGC-NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 463
Query: 166 QKAIEKLNGMLLNDKQVYV 184
Q AI+ +NG + K++ V
Sbjct: 464 QAAIQAMNGFQIGMKRLKV 482
Score = 127 (49.8 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 29/98 (29%), Positives = 54/98 (55%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGF 247
++Q++ + + N+++ +L + T+ ++ + F +G + SA V D +SKCFGF
Sbjct: 395 QQQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 454
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVG-KAQKKSER 284
V+F+N A A++A+NG + K V K K + R
Sbjct: 455 VSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 492
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 206 (77.6 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 48/166 (28%), Positives = 82/166 (49%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
SLGYG+V FS EAA A+E LN ++ KP++V Y+ S +S N++I L+ +
Sbjct: 151 SLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSS--QSTHANLYINRLEPHV 208
Query: 124 DHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDK 180
+ L + F +FG+++ K+ TD + G S+ GFV F A KA+ +NG +
Sbjct: 209 TNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGANIPFQST 268
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
+YV + + N + N N + + + + + G +
Sbjct: 269 PIYVKFANQLSGNNNGNNNNNIINSNSNNNNNNNSNSNFNNNNGNF 314
Score = 193 (73.0 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 45/138 (32%), Positives = 70/138 (50%)
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYV 207
N S GYGFV+F ++ A AIE+LNG ++ K + V + + T N+Y+
Sbjct: 148 NNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTH------ANLYI 201
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGK 266
L T +L++ FG +G + ++ D D G S+C GFV+F +A +AV ++NG
Sbjct: 202 NRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGA 261
Query: 267 K--FDDKEWYVGKAQKKS 282
F YV A + S
Sbjct: 262 NIPFQSTPIYVKFANQLS 279
Score = 192 (72.6 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 60/198 (30%), Positives = 94/198 (47%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM----RDGDGKSKCFGFVNFENSDDAAR 258
TN+ V N+ +S +L+ F ++G I S ++ +DG+G S +N NS+ +
Sbjct: 82 TNLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSNIN--INSNNSNGSNS 139
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELK--HQFEQNMKEA------ADKFQG--ANL 308
N + K KK E + ++ + FE + K A Q ANL
Sbjct: 140 NNNNNNSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHANL 199
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMN 367
YI L+ + + LK++F FG + K++ DP +G SR GFV FS EA +A+ MN
Sbjct: 200 YINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMN 259
Query: 368 GKMVV--SKPLYVALAQR 383
G + S P+YV A +
Sbjct: 260 GANIPFQSTPIYVKFANQ 277
Score = 119 (46.9 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ LE +VT++ L ++F G V+ ++ D T S G+V+FS +EA +A+
Sbjct: 198 NLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSS 257
Query: 85 LNFT--PLNGKPIRVMYSHR 102
+N P PI V ++++
Sbjct: 258 MNGANIPFQSTPIYVKFANQ 277
Score = 72 (30.4 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
++I NL ++ID+ L +LF+ FG+I+ +++ + G + + + A+ +N
Sbjct: 454 IHISNLPNNIDETFLYKLFA-FGAISGVQLLNN------GQAIITYLDYQTVQNAINTLN 506
Query: 368 GKMVVSKPLYV 378
GK++ + L V
Sbjct: 507 GKIISGRSLKV 517
Score = 69 (29.3 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I I NL ID L+ F AFG I ++ NGQ+ + + + ++ Q AI LN
Sbjct: 454 IHISNLPNNIDETFLYKLF-AFGAISGVQLLN--NGQA----IITYLDYQTVQNAINTLN 506
Query: 174 GMLLNDKQVYV 184
G +++ + + V
Sbjct: 507 GKIISGRSLKV 517
Score = 55 (24.4 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
T+L V ++ ++ ++L LF++ G++ S C+ + R+ G G N +
Sbjct: 82 TNLIVNNIPKSMDSNELKSLFDKFGEIES---CKIVFNRKKDGNGNSNIN 128
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 155 (59.6 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 43/163 (26%), Positives = 74/163 (45%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +F+ + + ++ K L F FG I V D G KG F+ + +S
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A KA L+ +++ G Q + + ++V L + T+ED++K F
Sbjct: 61 ALKAQSALH-----EQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFE 115
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+GTI V+R DG SK FV F+ +A A+ L+ +
Sbjct: 116 PFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 158
Score = 146 (56.5 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ +++ + + Q +Q +E D G N++I +L D ++ Q+F PFG + S KV D
Sbjct: 358 QQQQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD 414
Query: 341 -PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ S+ GFV+F P A A+ MNG + K L V L + K+ R
Sbjct: 415 RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 142 (55.0 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 43/151 (28%), Positives = 68/151 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L+VG + ++ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R G +F+ L K + + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESR--GDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECT 124
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
V +G SKG FV+F AQ AI L+
Sbjct: 125 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 155
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 296 MKEAADKFQG-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+K A + +G L++ L DE ++++F PFG+I C V+R P G S+G FV F
Sbjct: 83 VKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQ 142
Query: 355 TPEEASRALLEMNGKMVV---SKPLYVALAQRKEDRRAR 390
T EA A+ ++ + S L V A +++R R
Sbjct: 143 THAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLR 181
Score = 132 (51.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
NIFI +L + + F FG+++S KV D QSK +GFV FDN SAQ AI+
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 123 (48.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 441 MNGFQIGMKRLKVQLKRPKDANR 463
Score = 62 (26.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G L+VG L TD + +F G + V R S G +V F EA A
Sbjct: 92 GDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDGTSKGCAFVKFQTHAEAQAA 150
Query: 82 LEMLN 86
+ L+
Sbjct: 151 INTLH 155
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 158 (60.7 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 44/165 (26%), Positives = 80/165 (48%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +F+ + + ++ K L F FG I V D G KG F+ + +S
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 165 AQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A KA L+ +++ G ++ + D+E ++ + ++V L + T+ED++K
Sbjct: 61 ALKAQSALH-----EQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLGKQQTDEDVRKM 114
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
F +GTI V+R DG SK FV F+ +A A+ L+ +
Sbjct: 115 FEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 51/190 (26%), Positives = 87/190 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
++V + E+DL+ F ++G I V++D G K F+ + D A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K R +++K ++ E D+ L++ L DE ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
++F PFG+I C V+R P G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 381 AQRKEDRRAR 390
A +++R R
Sbjct: 173 ADTEKERGLR 182
Score = 142 (55.0 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 35/101 (34%), Positives = 52/101 (51%)
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRG 347
+ Q +Q +E D G N++I +L D ++ Q+F PFG + S KV D + S+
Sbjct: 362 QQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC 418
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
GFV+F P A A+ MNG + K L V L + K+ R
Sbjct: 419 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 459
Score = 138 (53.6 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 42/151 (27%), Positives = 67/151 (44%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L+VG + ++ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L K + + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
V +G SKG FV+F AQ AI L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
NIFI +L + + F FG+++S KV D QSK +GFV FDN SAQ AI+
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 437 MNGFQIGMKRLKV 449
Score = 123 (48.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 437 MNGFQIGMKRLKVQLKRPKDANR 459
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 248 (92.4 bits), Expect = 5.4e-19, P = 5.4e-19
Identities = 74/274 (27%), Positives = 139/274 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKGYGFVQFDNEESAQKAIEKL 172
+++ +L +D LH FS + S KV + QS+GYGFV+F + +A++A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 173 NGMLL-NDKQVYV---GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF-GEYG 227
+G+ + N +Q + F ++R +E +++V +L+ ++ L ++F G Y
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPD--LSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 228 TITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA-------- 278
++ A V+ D + G+SK +GFV F + ++ +RA+ +NG ++ VG A
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAY 298
Query: 279 -QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
Q+ + L L N + + + +++ LD + +E L Q FS FG + S K+
Sbjct: 299 GQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI 358
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
P G +G GFV F+ + A A+ +NG ++
Sbjct: 359 ---PVG--KGCGFVQFANRQSAEEAIGNLNGTVI 387
Score = 206 (77.6 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 56/169 (33%), Positives = 93/169 (55%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+VGDL + ++ L+ F+ +V SV+V R+ T +S GYG+V F + A AL+
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 85 LN-FTPLNGK-PIRVMY-SHRDPSLRKSGAG---NIFIKNLDKAIDHKALHDTFSA-FGN 137
+ T N + P R+ + S R S G +IF+ +L + L +TF+ + +
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 138 ILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+ KV D N G+SKGYGFV+F +E +A+ ++NG + +Q+ VG
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVG 288
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/184 (26%), Positives = 85/184 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVEAL 263
++V +L E L F ++S V+R+ +S+ +GFV F + A A+++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKH-QFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+G + +E+ L F K A++ ++++ +L + D L
Sbjct: 181 SGVTMPN-----------AEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVL 229
Query: 323 KQLFSP-FGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+ F+ + S+ KV+ D + G S+G GFV F E SRA+ EMNG S+ + V +
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGI 289
Query: 381 AQRK 384
A K
Sbjct: 290 ATPK 293
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 33/94 (35%), Positives = 47/94 (50%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
+S IF+ LD + + L FS FG ++S K+ KG GFVQF N +SA++
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV-----GKGCGFVQFANRQSAEE 377
Query: 168 AIEKLNGMLLNDKQVYV--GHFLRKQERDTEINK 199
AI LNG ++ V + G KQ R N+
Sbjct: 378 AIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQ 411
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++++VG L+A+VT+ L F+ G+VVSV++ G G+V F+N Q A A+
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGKGCGFVQFANRQSAEEAIG 380
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLR-KSGAGN 113
LN T + +R+ + R P+ + +S +GN
Sbjct: 381 NLNGTVIGKNTVRLSWG-RSPNKQWRSDSGN 410
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 155 (59.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+++ + + E+DL+ F +YG I V++D G K F+ + + A +A AL
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ Y G R +++K + E D+ L++ L DE ++
Sbjct: 69 HYSS-----GYSGM-----NRPIQVKPADSEGRGE--DR----KLFVGMLGKQQSDEDVR 112
Query: 324 QLFSPFGSITSCKVMRDPSGISR-GSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVA 379
++F PFG I C V+R P G S+ G FV F + EA A+ ++G + S L V
Sbjct: 113 KIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVK 172
Query: 380 LAQRKEDRRAR 390
A +++R R
Sbjct: 173 FADTEKERGVR 183
Score = 151 (58.2 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 43/164 (26%), Positives = 79/164 (48%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+++ A +FI + + ++ K L F +G I V D G KG F+ + ES
Sbjct: 1 MKEPDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARES 60
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A KA L+ + + ++ + D+E + + ++V L + ++ED++K F
Sbjct: 61 AIKAQSALH---YSSGYSGMNRPIQVKPADSE-GRGEDRKLFVGMLGKQQSDEDVRKIFE 116
Query: 225 EYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEALNGKK 267
+G I V+R DG SK FV F++ +A A+ +L+G +
Sbjct: 117 PFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSR 160
Score = 149 (57.5 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 37/108 (34%), Positives = 59/108 (54%)
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD- 340
S+++L+ F Q ++EA +G N++I +L D ++ Q+F PFG++ S KV D
Sbjct: 336 SQQQLQ---SFSQCVREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDR 392
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ S+ GFV+F P A A+ MNG + K L V L + K+ R
Sbjct: 393 ATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 440
Score = 145 (56.1 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 42/153 (27%), Positives = 72/153 (47%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++G + N+ + L +F Q G++ + V +D T G ++ + + A +A L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 86 NFTP-LNG--KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+++ +G +PI+V + D R +F+ L K + + F FG I C
Sbjct: 69 HYSSGYSGMNRPIQVKPA--DSEGRGEDR-KLFVGMLGKQQSDEDVRKIFEPFGGIDECT 125
Query: 143 VATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
V +G SK G FV+F + AQ AI L+G
Sbjct: 126 VLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHG 158
Score = 136 (52.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+FI +L + + F FGN++S KV D QSK +GFV FDN SAQ AI+
Sbjct: 358 NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 417
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 418 MNGFQIGMKRLKV 430
Score = 125 (49.1 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
NV++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 358 NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 417
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 418 MNGFQIGMKRLKVQLKRPKDANR 440
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 163 (62.4 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 53/190 (27%), Positives = 89/190 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
++V + + E+DL+ F ++G I V++D G K F+ + D A +A AL
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K G A R +++K + + D+ L++ L+ +E +
Sbjct: 107 HEQKT-----LPGMA-----RPIQVKPA-DSESRGGRDR----KLFVGMLNKQQSEEDVL 151
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
+LF PFG I C V+R P G S+G FV FS+ EA A+ ++G + S L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 381 AQRKEDRRAR 390
A ++R R
Sbjct: 212 ADTDKERTLR 221
Score = 160 (61.4 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 44/157 (28%), Positives = 75/157 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+F+ + + +D K L F FG I V D G KG F+ + +SA KA
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA---- 102
Query: 173 NGMLLNDKQVYVGHF--LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
L++++ G ++ + D+E + ++V L++ +EED+ + F +G I
Sbjct: 103 -QTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVID 161
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
V+R DG SK FV F + +A A+ AL+G +
Sbjct: 162 ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 198
Score = 154 (59.3 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 45/152 (29%), Positives = 70/152 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L+VG + N+ + L LF Q G++ + V +D T G ++ + +A +A AL
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L+K + + F FG I C
Sbjct: 107 HEQKTLPGMARPIQVKPA--DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
V +G SKG FV+F + AQ AI L+G
Sbjct: 165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 140 (54.3 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
+G NL+I +L D +L Q+F PFG+I S KV D + S+ GFV+F P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 457
Query: 363 LLEMNGKMVVSKPLYVALAQRKE 385
+ MNG + K L V L + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
Score = 136 (52.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+FI +L + L F FGNI+S KV D QSK +GFV FDN SAQ AI+
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 116 (45.9 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + + +L + F +G I S+ V D +SKCFGFV+F+N A A++A
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 263 LNG 265
+NG
Sbjct: 461 MNG 463
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 161 (61.7 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 53/190 (27%), Positives = 88/190 (46%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
++V + E+DL+ F ++G I V++D G K F+ + D A +A AL
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K G A R +++K + + D+ L++ L+ +E +
Sbjct: 107 HEQKT-----LPGMA-----RPIQVKPA-DSESRGGRDR----KLFVGMLNKQQSEEDVL 151
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
+LF PFG I C V+R P G S+G FV FS+ EA A+ ++G + S L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 381 AQRKEDRRAR 390
A ++R R
Sbjct: 212 ADTDKERTLR 221
Score = 160 (61.4 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 44/157 (28%), Positives = 75/157 (47%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+F+ + + +D K L F FG I V D G KG F+ + +SA KA
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA---- 102
Query: 173 NGMLLNDKQVYVGHF--LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
L++++ G ++ + D+E + ++V L++ +EED+ + F +G I
Sbjct: 103 -QTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVID 161
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
V+R DG SK FV F + +A A+ AL+G +
Sbjct: 162 ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 198
Score = 149 (57.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 44/152 (28%), Positives = 70/152 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L+VG + ++ + L LF Q G++ + V +D T G ++ + +A +A AL
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L+K + + F FG I C
Sbjct: 107 HEQKTLPGMARPIQVKPA--DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
V +G SKG FV+F + AQ AI L+G
Sbjct: 165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 140 (54.3 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
+G NL+I +L D +L Q+F PFG+I S KV D + S+ GFV+F P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAA 457
Query: 363 LLEMNGKMVVSKPLYVALAQRKE 385
+ MNG + K L V L + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
Score = 136 (52.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+FI +L + L F FGNI+S KV D QSK +GFV FDN SAQ AI+
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 116 (45.9 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + + +L + F +G I S+ V D +SKCFGFV+F+N A A++A
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 263 LNG 265
+NG
Sbjct: 461 MNG 463
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 175 (66.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 46/179 (25%), Positives = 90/179 (50%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD----GDGKSKCF 245
++E + E +++KNL+ TTEE L++ F + GT+ S + + G S F
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFV + + A +A++ L G D + V +++ ++ + L + + K+ K
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK--- 833
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS--RGSGFVAFSTPEEASRA 362
+ ++N+ ++++LFS FG + + ++ + +G RG GFV F T ++A RA
Sbjct: 834 --ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 166 (63.5 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 50/164 (30%), Positives = 83/164 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ----SKGYGFVQFDNEESAQKAI 169
+FIKNL+ + L + FS G + SC ++ N S G+GFV++ E AQKA+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 170 EKLNGMLLNDKQVYVGHFLRKQE------RDTEINKSKFTN-VYVKNL---SESTTEEDL 219
++L G +++ ++ V R + R ++ + + T+ + V+N+ + S +L
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
+FGE T+ M G G + FGFV+F DA RA AL
Sbjct: 852 FSTFGELKTVRLPKKMT-GTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 157 (60.3 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 33/95 (34%), Positives = 57/95 (60%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR--DPSGI--SRGS 348
E+ +E + G L+IKNL+ +EKLK++FS G++ SC + + + +G+ S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
GFV + PE+A +AL ++ G +V L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Score = 149 (57.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 38/164 (23%), Positives = 83/164 (50%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR---SLGYGYVNFSNAQEAARA 81
+L++ +L + T+ +L ++F+++G V S + + + S+G+G+V + ++A +A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 82 LEMLNFTPLNGKPIRVMYSHR--DPSL---------RKSGAGNIFIKNLDKAIDHKALHD 130
L+ L ++G + V S R P++ RK I ++N+ + + +
Sbjct: 791 LKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRE 850
Query: 131 TFSAFGNILSCKVATDLNGQS--KGYGFVQFDNEESAQKAIEKL 172
FS FG + + ++ + G +G+GFV F ++ A++A L
Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 137 (53.3 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 49/180 (27%), Positives = 81/180 (45%)
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F F N K A N + G +++ E K + G N + + G L +
Sbjct: 337 FVDFSNEEEVKQALKCNREYMGGRYIEVFRE----KNVPTTKGAPKNTTKSWQGRILGEN 392
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
E + ++ +S ++V+NL ++TEEDL+K F +YG ++ D K K F F+ F
Sbjct: 393 EEEEDLAESG--RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITF 450
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQ-KK--SERELELKHQFEQNMKEAADKFQGAN 307
+ A +A ++G+ F + +V + KK SE L + KEA DK A+
Sbjct: 451 MFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSAS 510
Score = 124 (48.7 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 41/182 (22%), Positives = 86/182 (47%)
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV----EALNGKK- 267
+ TE+++ + + +V R+ G + FV+F N ++ +A+ E + G+
Sbjct: 304 NVTEKNVMEFLAPLKPVAIRIV-RNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 362
Query: 268 --FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
F +K K K+ + +N +E D + L+++NL + +E L++L
Sbjct: 363 EVFREKNVPTTKGAPKNTTKSWQGRILGEN-EEEEDLAESGRLFVRNLPYTSTEEDLEKL 421
Query: 326 FSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS +G ++ D + +G F+ F PE A +A E++G++ + L+V + K
Sbjct: 422 FSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIK 481
Query: 385 ED 386
++
Sbjct: 482 KE 483
Score = 112 (44.5 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 59/261 (22%), Positives = 111/261 (42%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+V +L T+ L LF++ G + + D T++ G+ ++ F + A +A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 86 NFTPLNGKPIRVMYS--HRDPSLRKSGAGNIFIKNLDKAIDHK---ALHDTFSAF-G-NI 138
+ G+ + V+ S ++ S S G+ K +A D + H+ + F G N
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNA 523
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG--MLLND-KQVYVGHFLRKQE-RD 194
++ +A N FD+E A+ G L+ + ++ + + +
Sbjct: 524 VADAIAQKYNATKSQV----FDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQ 579
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+SK T + VKNL T LQ++FG +G++ V++ +G G + V F
Sbjct: 580 AAAERSK-TVILVKNLPAGTLAAQLQETFGHFGSL-GRVLLPEG-GIT---AIVEFLEPL 633
Query: 255 DAARAVEALNGKKFDDKEWYV 275
+A +A L KF Y+
Sbjct: 634 EARKAFRHLAYSKFHHVPLYL 654
Score = 110 (43.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ +KNL + + F+AFG + C + +G+ + +GF+ F +EE AQKA + N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 174 GMLLNDKQVYV 184
++ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 108 (43.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 61/278 (21%), Positives = 112/278 (40%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+G +F++NL + L FS +G + D L + KG+ F+ F E A KA
Sbjct: 401 SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 170 EKLNGMLLNDKQVYV-GHFLRKQ--ERDTEINKSKFTNVY-VKNLSESTTEEDLQKSFGE 225
+++G + + ++V ++K+ E + + S + ++ + S + + F
Sbjct: 461 SEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMG 520
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE-R 284
+ A+ + KS+ F + E A V AL G+ Q E R
Sbjct: 521 PNAVADAIAQKYNATKSQVF---DHETKGSVAVRV-AL------------GETQLVQEVR 564
Query: 285 ELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
+ + + +AA + + +KNL +L++ F FGS+ +V+ G
Sbjct: 565 RFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLG--RVLLPEGG 622
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
I+ V F P EA +A + PLY+ A
Sbjct: 623 IT---AIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 657
Score = 107 (42.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
+ + VKNL EE ++ F +GT+T + DGK + FGF+ F++ ++A +A +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 263 LNGKKFDD 270
N K F D
Sbjct: 62 FN-KSFID 68
Score = 79 (32.9 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
++ ++ + +G GY FV F NEE ++A+ K N + + Y+ F K T+
Sbjct: 320 VAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL-KCNREYMGGR--YIEVFREKNVPTTKGA 376
Query: 199 KSKFTNVYV-KNLSESTTEEDLQKS 222
T + + L E+ EEDL +S
Sbjct: 377 PKNTTKSWQGRILGENEEEEDLAES 401
Score = 74 (31.1 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 34 NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93
NVT+ + + + + V++R+ R+ ++ GY +V+FSN +E +AL+ N + G+
Sbjct: 304 NVTEKNVMEFLAPL-KPVAIRIVRNAHGNKT-GYIFVDFSNEEEVKQALKC-NREYMGGR 360
Query: 94 PIRVMYSHRDPSLR 107
I V P+ +
Sbjct: 361 YIEVFREKNVPTTK 374
Score = 56 (24.8 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
L V +L + + + LF G + S++ +D R+ +G++ F + +EA +A +
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEAQKAQK 60
Query: 84 MLNFTPLNGKPIRVMY--SHRDPS 105
N + ++ I V + S DP+
Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDPA 84
Score = 45 (20.9 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 149 GQSK-GYGFVQFDNEESAQKAIEKLNGMLLNDK-QVYVGHFLRKQERDTEINKSKFTNVY 206
G+SK ++ FD++ S Q++ E+ G L ++ + ++K+ D + KSK
Sbjct: 161 GKSKPASDYLNFDSD-SGQESEEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAG 219
Query: 207 VKNLSESTTEED 218
+ SE ED
Sbjct: 220 SSSSSEEEESED 231
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 51/199 (25%), Positives = 88/199 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+DL++ F +YG + V+RD +SK FV F A A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + +
Sbjct: 105 ALHNMKV-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTEND 150
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FS FG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 151 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 210
Query: 379 ALAQRKEDRRARLQVCLLQ 397
A ++D+ + LQ
Sbjct: 211 KFADTQKDKEQKRMAQQLQ 229
Score = 152 (58.6 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 426 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 485
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 486 IQSMNGFQIGMKRLKVQLKRSKNDSK 511
Score = 147 (56.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 57/237 (24%), Positives = 106/237 (44%)
Query: 84 MLNFTPLNGKPI-RVMYSHRD-PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
M++ LN P+ + M D P A +F+ + + K L + F +G +
Sbjct: 13 MVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEI 72
Query: 142 KVATDLNG---QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTE 196
V D + QSKG FV F ++A +A L+ M +V G H ++ + D+E
Sbjct: 73 NVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-----KVLPGMHHPIQMKPADSE 127
Query: 197 INKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
N + + +++ +S+ TE D++ F +G I ++R DG S+ FV F
Sbjct: 128 KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAM 187
Query: 256 AARAVEALNGKKFDD---KEWYVGKAQKKSERELE-LKHQFEQNMKEAADKFQGANL 308
A A++A++ + + V A + ++E + + Q +Q M++ + NL
Sbjct: 188 AQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNL 244
Score = 142 (55.0 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 43/153 (28%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + ++ L +LF Q G V + V RD S +S G +V F A EA
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + FS+FG I
Sbjct: 105 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDIRVMFSSFGQIEE 163
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 164 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 196
Score = 137 (53.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N L + I S ++ GA N+FI +
Sbjct: 381 STMEALTQAYSGIQ--QYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA-NLFIYH 434
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 435 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 494
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 495 GMKRLKVQ--LKRSKNDSK 511
Score = 116 (45.9 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 429 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 488
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 489 MNGFQIGMKRLKVQLKRSKND 509
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 51/199 (25%), Positives = 88/199 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+DL++ F +YG + V+RD +SK FV F A A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + +
Sbjct: 105 ALHNMKV-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTEND 150
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FS FG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 151 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 210
Query: 379 ALAQRKEDRRARLQVCLLQ 397
A ++D+ + LQ
Sbjct: 211 KFADTQKDKEQKRMAQQLQ 229
Score = 152 (58.6 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 427 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 486
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 487 IQSMNGFQIGMKRLKVQLKRSKNDSK 512
Score = 147 (56.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 57/237 (24%), Positives = 106/237 (44%)
Query: 84 MLNFTPLNGKPI-RVMYSHRD-PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
M++ LN P+ + M D P A +F+ + + K L + F +G +
Sbjct: 13 MVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEI 72
Query: 142 KVATDLNG---QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTE 196
V D + QSKG FV F ++A +A L+ M +V G H ++ + D+E
Sbjct: 73 NVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-----KVLPGMHHPIQMKPADSE 127
Query: 197 INKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
N + + +++ +S+ TE D++ F +G I ++R DG S+ FV F
Sbjct: 128 KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAM 187
Query: 256 AARAVEALNGKKFDD---KEWYVGKAQKKSERELE-LKHQFEQNMKEAADKFQGANL 308
A A++A++ + + V A + ++E + + Q +Q M++ + NL
Sbjct: 188 AQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNL 244
Score = 142 (55.0 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 43/153 (28%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + ++ L +LF Q G V + V RD S +S G +V F A EA
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + FS+FG I
Sbjct: 105 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDIRVMFSSFGQIEE 163
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 164 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 196
Score = 137 (53.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N L + I S ++ GA N+FI +
Sbjct: 382 STMEALTQAYSGIQ--QYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA-NLFIYH 435
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 436 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 495
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 496 GMKRLKVQ--LKRSKNDSK 512
Score = 116 (45.9 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 430 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 489
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 490 MNGFQIGMKRLKVQLKRSKND 510
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 159 (61.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 44/165 (26%), Positives = 80/165 (48%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
++ A +FI + + +D K L F FG I V D G KG F+ + ES
Sbjct: 41 MKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARES 100
Query: 165 AQKAIEKLNGMLLNDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A KA L++++ G ++ + D+E ++ + ++V L++ E+D+++
Sbjct: 101 ALKA-----QTALHEQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLNKQQCEDDVRRL 154
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
F +G+I ++R DG SK FV + +A A+ AL+G +
Sbjct: 155 FESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQ 199
Score = 154 (59.3 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+++ + + E+DL+ F E+G I V++D G K F+ + + A +A AL
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTAL 108
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ +K R +++K ++ E F G + N DD ++
Sbjct: 109 HEQK----------TLPGMNRPIQVKPADSESRGEDRKLFVG----MLNKQQCEDD--VR 152
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVAL 380
+LF FGSI C ++R P G S+G FV +ST EA A+ ++G + S L V
Sbjct: 153 RLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKF 212
Query: 381 AQRKEDRRAR 390
A ++R R
Sbjct: 213 ADTDKERTIR 222
Score = 147 (56.8 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L++G + N+ + L LF + G++ + V +D T G ++ + +A +A AL
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTAL 108
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R +F+ L+K + F +FG+I C
Sbjct: 109 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLNKQQCEDDVRRLFESFGSIEECT 165
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +G SKG FV++ AQ AI L+G
Sbjct: 166 ILRGPDGNSKGCAFVKYSTHAEAQAAISALHG 197
Score = 139 (54.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 33/86 (38%), Positives = 47/86 (54%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
+G NL+I +L D +L Q+F PFG++ S KV D + S+ GFV+F P A A
Sbjct: 433 EGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAA 492
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K+ R
Sbjct: 493 IQSMNGFQIGMKRLKVQLKRPKDANR 518
Score = 136 (52.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 104 PSLRKSGA-G-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFD 160
P ++ G G N+FI +L + L F FGN++S KV D QSK +GFV FD
Sbjct: 425 PQQQREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFD 484
Query: 161 NEESAQKAIEKLNGMLLNDKQVYV 184
N SAQ AI+ +NG + K++ V
Sbjct: 485 NPGSAQAAIQSMNGFQIGMKRLKV 508
Score = 112 (44.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + + +L + F +G + S+ V D +SKCFGFV+F+N A A+++
Sbjct: 436 NLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 495
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 496 MNGFQIGMKRLKVQLKRPKDANR 518
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 204 (76.9 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 54/173 (31%), Positives = 101/173 (58%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNFSNAQEAAR 80
G T+L++G+LE + ++ + +L+ QMG+ V+V++ RD S R + GY +V+F++ AA+
Sbjct: 63 GKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAK 122
Query: 81 ALEMLNFTPL--NGKPIRVMYSH----RDPSLRKSGAG-NIFIKNLDKAIDHKALHDTF- 132
AL LN TP+ + ++ ++ D S G +IF+ +L ++ L F
Sbjct: 123 ALS-LNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQ 181
Query: 133 SAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
S F + S K+ TD ++G S+GYGFV+F +E Q+A+ ++ G+ ++ + +
Sbjct: 182 SRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRI 234
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 53/193 (27%), Positives = 94/193 (48%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKC-FGFVNFENSDD 255
N+ K T +++ L E ++ + + G + ++RD G+S + FV+F +
Sbjct: 61 NEGK-TTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAA 119
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA--NLYIKNL 313
AA+A+ +LNG + + R +L + + + +G ++++ +L
Sbjct: 120 AAKAL-SLNGTPMPN-----------TNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDL 167
Query: 314 DDSIDDEKLKQLF-SPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV 371
+++ L LF S F S S K+M DP SG+SRG GFV FS + RAL EM G
Sbjct: 168 GPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYC 227
Query: 372 VSKPLYVALAQRK 384
++P+ ++ A K
Sbjct: 228 GNRPMRISTATPK 240
Score = 125 (49.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 46/184 (25%), Positives = 86/184 (46%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSK-GYGFVQFDNEESAQK 167
G +++ L+ ID + + + G ++ K+ D +G+S GY FV F + +A K
Sbjct: 63 GKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAK 122
Query: 168 AIEKLNGMLL-NDKQVY-----VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A+ LNG + N +++ G L + RD ++ +++V +L E L
Sbjct: 123 ALS-LNGTPMPNTNRLFKLNWATGGGLADRSRD---DRGPEYSIFVGDLGPEVNEYVLVS 178
Query: 222 SF-GEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
F + + SA +M D G S+ +GFV F + +D RA+ + G ++ + A
Sbjct: 179 LFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTAT 238
Query: 280 KKSE 283
K++
Sbjct: 239 PKNK 242
Score = 82 (33.9 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q M + D +++ L + +++L+ F FG IT K+ P G +G GFV F
Sbjct: 275 QPMNQFTDP-NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKI---PPG--KGCGFVQF 328
Query: 354 STPEEASRALLEMNG 368
A A+ +M G
Sbjct: 329 VQRHAAEMAINQMQG 343
Score = 73 (30.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
T V+V LS TE++L+ F +G IT V + G G C GFV F A A+
Sbjct: 286 TTVFVGGLSGYVTEDELRSFFQGFGEITY-VKIPPGKG---C-GFVQFVQRHAAEMAINQ 340
Query: 263 LNG 265
+ G
Sbjct: 341 MQG 343
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 185 (70.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 52/178 (29%), Positives = 95/178 (53%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM--RDGDGK--SKCF 245
++E D +I + +++KNL+ T+EE LQK+F + G + S + RD GK S +
Sbjct: 691 EEEEDDQILPG--STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGY 748
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFV ++ + A +A+ L D+ + V K SERE++ + K+ A K
Sbjct: 749 GFVQYKTPEAAQKAMRQLQHCTVDEHQLEV----KISEREVKSGVAQAKRKKQTARKQTT 804
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS-RGSGFVAFSTPEEASRA 362
+ + ++N+ ++L++LF FG + + ++ + G S RG GF+ F T ++A +A
Sbjct: 805 SKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKA 862
Score = 179 (68.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAT--DLNGQ--SKGYGFVQFDNEESAQKAI 169
+FIKNL+ + L TFS G + SC ++ D G+ S GYGFVQ+ E+AQKA+
Sbjct: 704 LFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAM 763
Query: 170 EKLNGMLLNDKQVYV---------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
+L +++ Q+ V G K+++ T K + + V+N+ T ++L+
Sbjct: 764 RQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTA-RKQTTSKILVRNIPFQATVKELR 822
Query: 221 KSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDAARAVEAL 263
+ F +G + + + + G G S + FGF++F DA +A AL
Sbjct: 823 ELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 138 (53.6 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 34/111 (30%), Positives = 63/111 (56%)
Query: 279 QKKSERELELKHQFEQNMKEAADKF-QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+K + + ++++ E+ +E D+ G+ L+IKNL+ +E L++ FS G + SC +
Sbjct: 674 EKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTI 733
Query: 338 M--RDPSG--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
RD +G +S G GFV + TPE A +A+ ++ V L V +++R+
Sbjct: 734 SKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISERE 784
Score = 134 (52.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 40/167 (23%), Positives = 77/167 (46%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC--RDLSTRR-SLGYGYVNFSNAQEA 78
G+T L++ +L ++ L F++ G V S + RD + + S+GYG+V + + A
Sbjct: 701 GST-LFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAA 759
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRD------------PSLRKSGAGNIFIKNLDKAIDHK 126
+A+ L ++ + V S R+ + RK I ++N+ K
Sbjct: 760 QKAMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVK 819
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
L + F FG + + ++ + G +G+GF+ F ++ A+KA L
Sbjct: 820 ELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 130 (50.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 36/160 (22%), Positives = 79/160 (49%)
Query: 236 RDGDGKSKCFGFVNFENSDDAARAV----EALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ DG++ + +V+ + + RA+ + + G+ + K ++S + E++
Sbjct: 322 KNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKN 381
Query: 292 FEQNMK---EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRG 347
F + +K E D + L+I+N+ + +E LK+LFS G ++ D + +G
Sbjct: 382 FVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKG 441
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FV + PE A AL +++G + L+V ++ K+++
Sbjct: 442 FAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 121 (47.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
+ + VKNL E+ +K F ++GT+T + DGK + FGFV F+ +DA +A++
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKH 61
Query: 263 LNGKKFDD 270
N K F D
Sbjct: 62 FN-KSFVD 68
Score = 119 (46.9 bits), Expect = 0.00091, P = 0.00090
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
+ L +KNL + + +++ +++F+ FG++T C + G R GFV F T E+A +AL
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKH 61
Query: 366 MNGKMVVSKPLYVAL 380
N V + + V L
Sbjct: 62 FNKSFVDTSRVTVEL 76
Score = 105 (42.0 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ +KNL + F+ FG + C + +G+ + +GFV F EE AQKA++ N
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFN 63
Query: 174 GMLLNDKQVYV 184
++ +V V
Sbjct: 64 KSFVDTSRVTV 74
Score = 105 (42.0 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 25/98 (25%), Positives = 53/98 (54%)
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFG 246
L+ E + ++ +S ++++N+ + TEEDL++ F ++G ++ + D K K F
Sbjct: 386 LKDDEEEEDVAESG--RLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFA 443
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
FV + ++A A+ L+G F + +V ++ K E+
Sbjct: 444 FVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 93 (37.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
+ +KNL + L+ LFSP GS+ +V+ PSG++ V F P EA RA +++
Sbjct: 587 ILVKNLPSGVQVADLEALFSPHGSLG--RVLLPPSGLT---AIVEFLEPTEAKRAFMKLA 641
Query: 368 GKMVVSKPLYVALA 381
PLY+ A
Sbjct: 642 YTKFQHVPLYLEWA 655
Score = 92 (37.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 51/257 (19%), Positives = 91/257 (35%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++ ++ T+ L +LF++ G + V D T++ G+ +V + + A AL L
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGA---GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ G+ + VM S G G+ K A D A + + L
Sbjct: 461 DGHTFQGRVLHVMASRLKKEKADQGPDAPGSSSYKRKKDAKDKAASGSSHNWNTLFLGTS 520
Query: 143 VATDLNGQSKGYGFVQ-FDNEESAQKAIEKLNG---MLLNDKQVYVGHFLRKQERDTEIN 198
D + Q D+E A+ G ++ +Q + + +
Sbjct: 521 AVADAIAEKYNTTKSQVLDHESDGSLAVRMALGETQIVQETRQFLLDNGVSLDSFSQASG 580
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ + VKNL DL+ F +G++ ++ G V F +A R
Sbjct: 581 ERSKCVILVKNLPSGVQVADLEALFSPHGSLGRVLLPPSG-----LTAIVEFLEPTEAKR 635
Query: 259 AVEALNGKKFDDKEWYV 275
A L KF Y+
Sbjct: 636 AFMKLAYTKFQHVPLYL 652
Score = 88 (36.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 32/127 (25%), Positives = 59/127 (46%)
Query: 71 NFSNAQEAARALEM-LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
NF N + +A+ EM NF +R + + + +G +FI+N+ + L
Sbjct: 365 NFKNDRRSAKRSEMEKNF-------VRELKDDEEEE-DVAESGRLFIRNMPYTCTEEDLK 416
Query: 130 DTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV-GHF 187
+ FS G + D L + KG+ FV + E+A A+ +L+G + ++V
Sbjct: 417 ELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASR 476
Query: 188 LRKQERD 194
L+K++ D
Sbjct: 477 LKKEKAD 483
Score = 65 (27.9 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 34 NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93
NV + Q+ + + + V++R ++ R S GY YV+ + E RAL L+ + G+
Sbjct: 300 NVKEQQVKEFMMPL-KPVAIRFAKNSDGRNS-GYVYVDLRSEAEVERALR-LDKDYMGGR 356
Query: 94 PIRVMYSHRDPSLRKSGAGNIFIKN 118
I V ++ + R+S + KN
Sbjct: 357 YIEVFRANNFKNDRRSAKRSEMEKN 381
Score = 65 (27.9 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 17/86 (19%), Positives = 45/86 (52%)
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK--QVYVGHFLRKQERDTE 196
++ + A + +G++ GY +V +E ++A+ +L+ + + +V+ + + R +
Sbjct: 316 VAIRFAKNSDGRNSGYVYVDLRSEAEVERAL-RLDKDYMGGRYIEVFRANNFKNDRRSAK 374
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKS 222
+S+ +V+ L + EED+ +S
Sbjct: 375 --RSEMEKNFVRELKDDEEEEDVAES 398
Score = 53 (23.7 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 20/109 (18%), Positives = 47/109 (43%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
L V +L + + + +F G + +++ +D R+ +G+V F ++A +AL+
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRK---FGFVGFKTEEDAQKALK 60
Query: 84 MLN--FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
N F + + + DP+ + + + + K + K H+
Sbjct: 61 HFNKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSKKDTEEKKTHE 109
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 271 KEWYVGKAQKKSERELELKHQFEQNMKE 298
+ W Q S+++ E K EQ KE
Sbjct: 87 RPWSKHTRQPSSKKDTEEKKTHEQGEKE 114
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 166 (63.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 48/163 (29%), Positives = 84/163 (51%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNE 162
PS + A +F+ + + + F +G++ SC + D + Q SKG FV F +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 163 ESAQKAIEKLNGMLLNDKQVY-VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A +A G L N K + + H ++ + DTE N+++ +++ LS+ EE+L++
Sbjct: 107 KDAIEA----QGALHNIKVIEGMHHPVQMKPADTE-NRNE-RKLFIGQLSKKHNEENLRE 160
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
F ++G I V+RD DGKS+ FV F N A A + ++
Sbjct: 161 IFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 163 (62.4 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 44/149 (29%), Positives = 70/149 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VG + ++ LF + G V S + RD ST+ S G +V F + ++A A L
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGAL 116
Query: 86 -NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + G V D R +FI L K + + L + F+ FG+I C V
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENRNER--KLFIGQLSKKHNEENLREIFAKFGHIEDCSVL 174
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
D +G+S+G FV F N A A ++++
Sbjct: 175 RDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 132 (51.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRAL 363
GANL+I +L D L F+PFG I S KV D + +S+ GFV++ + A+ A+
Sbjct: 502 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 561
Query: 364 LEMNGKMVVSKPLYVALAQRKEDR 387
MNG + SK L V L K DR
Sbjct: 562 SAMNGFQIGSKRLKVQL---KVDR 582
Score = 132 (51.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 49/186 (26%), Positives = 82/186 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
++V + E D ++ F +YG++ S ++RD ++ G F A+EA
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK-GCC-FVTFYHRKDAIEA-Q 113
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + K + +++K +N E L+I L ++E L++
Sbjct: 114 GALHNIK------VIEGMHHPVQMKPADTENRNER-------KLFIGQLSKKHNEENLRE 160
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVALA 381
+F+ FG I C V+RD G SRG FV F+ A A EM+ + S PL V A
Sbjct: 161 IFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFA 220
Query: 382 QRKEDR 387
++D+
Sbjct: 221 DTQKDK 226
Score = 129 (50.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
GA N+FI +L + L +TF+ FG ILS KV D + SK +GFV ++N +SA A
Sbjct: 502 GA-NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 560
Query: 169 IEKLNGMLLNDKQVYV 184
I +NG + K++ V
Sbjct: 561 ISAMNGFQIGSKRLKV 576
Score = 127 (49.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + + DL +F +G I SA V D SKCFGFV++EN+ A A+ A
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 263 LNGKKFDDKEWYVGKAQKKSER 284
+NG + K K Q K +R
Sbjct: 564 MNGFQIGSKRL---KVQLKVDR 582
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 231 (86.4 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 73/266 (27%), Positives = 130/266 (48%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L +L N+T+ +L ++F + +R V +D +S G Y+ F + +A + LE
Sbjct: 396 TLLAKNLSFNITEDELKEVFED---AMEIRLVSQD---GKSKGIAYIEFKSEADAEKNLE 449
Query: 84 MLNFTPLNGKPIRVMYS----HRDPSLRKSGAGNIFIKNLDKA-IDHKALHDTFS-AFGN 137
++G+ + + Y+ R K+ + K L + + + A +T F
Sbjct: 450 EKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEK 509
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
KV + +G+ KGY F++F + E A++A+ N M + + + L Q ++
Sbjct: 510 ATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR----LELQGSNSRS 565
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
SK ++VK LSE TTEE L++SF G++ + +V G SK FGFV+F + +DA
Sbjct: 566 QPSK--TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAK 621
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSE 283
A EA+ + D + + A+ K E
Sbjct: 622 AAKEAMEDGEIDGNKVTLDWAKPKGE 647
Score = 211 (79.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 70/292 (23%), Positives = 140/292 (47%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++G+L N + ++L +++ + V D+ T + +GYV+F +A++ +ALE+
Sbjct: 310 NLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKALEL 368
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
G I++ S + A + KNL I L + F + + ++
Sbjct: 369 TGLKVF-GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE---DAMEIRLV 424
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV---YVGHFLRKQERD--TEINK 199
+ +G+SKG +++F +E A+K +E+ G ++ + V Y G ++QER T
Sbjct: 425 SQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWS 483
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ + + NLS S T+E L++ F E T V ++ GK K + F+ F + +DA A
Sbjct: 484 GESKTLVLSNLSYSATKETLEEVF-EKATFIK--VPQNPHGKPKGYAFIEFASFEDAKEA 540
Query: 260 VEALNGKKFDDK----EWYVGKAQKKSERELELKHQFEQNMKEAA-DKFQGA 306
+ + N + + + E ++ + + L +K E +E + F+G+
Sbjct: 541 LNSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFEGS 592
Score = 193 (73.0 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 71/264 (26%), Positives = 135/264 (51%)
Query: 113 NIFIKNLD--KAIDHK--ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
N+FI NL+ K+++ A+ + F A ++ V T G ++ +G+V F++ E +KA
Sbjct: 310 NLFIGNLNPNKSVNELKFAISELF-AKNDLAVVDVRT---GTNRKFGYVDFESAEDLEKA 365
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
+E L G+ + ++ + + + RD++ ++ T + KNLS + TE++L++ F +
Sbjct: 366 LE-LTGLKVFGNEIKLE---KPKGRDSKKVRAART-LLAKNLSFNITEDELKEVFEDAME 420
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
I +V +DG KSK ++ F++ DA + +E G + D + + +K +R+
Sbjct: 421 IR--LVSQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ--- 473
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
E+ K + + L + NL S E L+++F T KV ++P G +G
Sbjct: 474 ----ERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFE---KATFIKVPQNPHGKPKGY 526
Query: 349 GFVAFSTPEEASRALLEMNGKMVV 372
F+ F++ E+A AL N KM +
Sbjct: 527 AFIEFASFEDAKEALNSCN-KMEI 549
Score = 87 (35.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 37/155 (23%), Positives = 72/155 (46%)
Query: 160 DNEESAQKAIEKLNGMLLND--KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEE 217
D EE ++ ++ G + KQ +KQ+ + + F N+++ NL+ + +
Sbjct: 266 DEEEEEEEPVKAAPGKRKKEMTKQKEAPE-AKKQKVEGSEPTTPF-NLFIGNLNPNKSVN 323
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK---EWY 274
+L+ + E V+ G ++ FG+V+FE+++D +A+E K F ++ E
Sbjct: 324 ELKFAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 383
Query: 275 VGKAQKK--SERELELKH-QFEQNMKEAADKFQGA 306
G+ KK + R L K+ F E + F+ A
Sbjct: 384 KGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA 418
Score = 84 (34.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
L++K L + +E LK+ F GS+ + V +G S+G GFV F++ E+A A
Sbjct: 571 LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 623
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 157 (60.3 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 44/163 (26%), Positives = 79/163 (48%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
++++ A +FI + + ++ K L F FG I V D G KG F+ + ES
Sbjct: 1 MKEADAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARES 60
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A KA N L++++ G Q + + ++V L + ++ D++K F
Sbjct: 61 ALKA---QNA--LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFE 115
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
+G+I V+R DG SK FV ++++ +A A+ AL+G +
Sbjct: 116 PFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSR 158
Score = 156 (60.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 43/152 (28%), Positives = 71/152 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARAL 82
L++G + N+ + L +F Q G++ + V +D T G ++ + +A +A AL
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
P +PI+V + D R G +F+ L K + + F FG+I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSEGR--GDRKLFVGMLGKQLSDADVRKMFEPFGSIEECT 124
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
V +G SKG FV++ + AQ AI L+G
Sbjct: 125 VLRGPDGASKGCAFVKYQSNAEAQAAISALHG 156
Score = 138 (53.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 36/101 (35%), Positives = 50/101 (49%)
Query: 89 PLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
P +P V + P + G NIFI +L + + F FGN++S KV
Sbjct: 340 PFPHQPTLVAQQPQQPQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVF 399
Query: 145 TD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
D QSK +GFV FDN SAQ AI+ +NG + K++ V
Sbjct: 400 VDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 440
Score = 137 (53.3 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
+G N++I +L D ++ Q+F PFG++ S KV D + S+ GFV+F P A A
Sbjct: 365 EGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 424
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K+ R
Sbjct: 425 IQAMNGFQIGMKRLKVQLKRPKDANR 450
Score = 135 (52.6 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 296 MKEAADKFQG-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+K A + +G L++ L + D ++++F PFGSI C V+R P G S+G FV +
Sbjct: 83 VKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQ 142
Query: 355 TPEEASRALLEMNGKMVV---SKPLYVALAQRKEDRRAR 390
+ EA A+ ++G + S L V A +++R R
Sbjct: 143 SNAEAQAAISALHGSRTLPGASSSLVVKFADTEKERGIR 181
Score = 124 (48.7 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 428 MNGFQIGMKRLKVQLKRPKDANR 450
Score = 62 (26.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G L+VG L ++D+ + +F G + V R S G +V + + EA A
Sbjct: 92 GDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRG-PDGASKGCAFVKYQSNAEAQAA 150
Query: 82 LEMLN 86
+ L+
Sbjct: 151 ISALH 155
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 162 (62.1 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 51/203 (25%), Positives = 95/203 (46%)
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCF 245
F ++ + D I+ S +Y N+ TE + + F ++G + S + +D K+ + +
Sbjct: 5 FRKRLDSDRNIDAS----LYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGY 60
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ- 304
GFV F+NS DA +E L G + K + + KS+ + +D
Sbjct: 61 GFVEFKNSADAKYTMEILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTFVQSDLINP 120
Query: 305 -----GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEE 358
GA L+I NL+ +D+ L FS FG++ ++R D G S G GF+ + E
Sbjct: 121 NYIDVGAKLFINNLNPLVDESFLMDTFSKFGTLIRNPIIRRDSEGHSLGYGFLTYDDFES 180
Query: 359 ASRALLEMNGKMVVSKPLYVALA 381
+ + +MN ++++ + ++ A
Sbjct: 181 SDLCIQKMNNTILMNNKITISYA 203
Score = 151 (58.2 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 36/118 (30%), Positives = 64/118 (54%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT-DLNGQSKGYGFVQFDN 161
+P+ GA +FI NL+ +D L DTFS FG ++ + D G S GYGF+ +D+
Sbjct: 119 NPNYIDVGA-KLFINNLNPLVDESFLMDTFSKFGTLIRNPIIRRDSEGHSLGYGFLTYDD 177
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDL 219
ES+ I+K+N +L + ++ + + + D + KS+ + + L+ES + +L
Sbjct: 178 FESSDLCIQKMNNTILMNNKITISYAFKDLSVDGK--KSRHGDQVERKLAESAKKNNL 233
Score = 131 (51.2 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLY G+++ VT+ +Y+LF Q G V S+ + +D + GYG+V F N+ +A +E+
Sbjct: 18 SLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSADAKYTMEI 77
Query: 85 LNFTPLNGKPIRV 97
L L GK +++
Sbjct: 78 LRGIRLYGKALKL 90
Score = 99 (39.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 27/114 (23%), Positives = 54/114 (47%)
Query: 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYG 155
+++ R S R A +++ N+D + +++ F FG + S + D + +GYG
Sbjct: 3 IIFRKRLDSDRNIDA-SLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYG 61
Query: 156 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKN 209
FV+F N A+ +E L G+ L K + + K + T ++ +V++
Sbjct: 62 FVEFKNSADAKYTMEILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTFVQS 115
Score = 94 (38.1 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 24/102 (23%), Positives = 53/102 (51%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGT-ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
+++ NL+ E L +F ++GT I + ++ RD +G S +GF+ +++ + + ++ +
Sbjct: 129 LFINNLNPLVDESFLMDTFSKFGTLIRNPIIRRDSEGHSLGYGFLTYDDFESSDLCIQKM 188
Query: 264 NGKKFDDKEWYVGKAQKK-SERELELKH--QFEQNMKEAADK 302
N + + + A K S + +H Q E+ + E+A K
Sbjct: 189 NNTILMNNKITISYAFKDLSVDGKKSRHGDQVERKLAESAKK 230
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 214 (80.4 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 54/179 (30%), Positives = 92/179 (51%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L+++V++ L LF+ MG V S ++ R+ Y ++ +SN Q A AL
Sbjct: 8 TLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP---YAFIEYSNYQAATTALTA 64
Query: 85 LNFTPLNGKPIRVMYSH---RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N K I+V ++ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNC 124
Query: 142 KVATDLNG-QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
++ D + +SKGY FV F + A+ AI+ +NG + + + RK E +K
Sbjct: 125 RIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSK 183
Score = 191 (72.3 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 52/189 (27%), Positives = 94/189 (49%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+++S+ +YV NL S +E+ L F G + S ++R+ G + F+ + N A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIRE-PGNDP-YAFIEYSNYQAA 58
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A+ A+N + F +KE V A + D ++++ +L
Sbjct: 59 TTALTAMNKRLFLEKEIKVNWATSPGNQP-------------KTDISSHHHIFVGDLSPE 105
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGI-SRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
I+ E L++ F+PFG I++C+++RDP + S+G FV+F EA A+ MNG+ + S+
Sbjct: 106 IETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRS 165
Query: 376 LYVALAQRK 384
+ + RK
Sbjct: 166 IRTNWSTRK 174
Score = 71 (30.1 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 185 GHFLRKQERDT--EI-NKSKFTN--VYVKNLSESTTEEDLQ-KSFGEYGTITSAVVMRDG 238
G ++ +R T E+ N+S TN VY + +DL K F ++G I V +D
Sbjct: 198 GSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD- 256
Query: 239 DGKSKCFGFVNFENSDDAARAVE 261
K F F+ F + AA A+E
Sbjct: 257 ----KGFSFIKFVTKEAAAHAIE 275
Score = 63 (27.2 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
+H FE+ +++ +Y + I D+ + + F FG I +V +D +G
Sbjct: 206 RHTFEEVYNQSSPT--NTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD-----KG 258
Query: 348 SGFVAFSTPEEASRAL 363
F+ F T E A+ A+
Sbjct: 259 FSFIKFVTKEAAAHAI 274
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 170 (64.9 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 51/192 (26%), Positives = 87/192 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + S E+DL++ F +YG + V+RD +SK FV F A A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + ++
Sbjct: 78 ALHNMKI-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCNEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FSPFG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 124 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVV 183
Query: 379 ALAQRKEDRRAR 390
A ++D+ +
Sbjct: 184 KFADTQKDKEQK 195
Score = 152 (58.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 398 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 457
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 458 IQSMNGFQIGMKRLKVQLKRSKNDSK 483
Score = 142 (55.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 43/153 (28%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + + + L +LF Q G V + V RD S +S G +V F A EA
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + + FS FG I
Sbjct: 78 ALHNMKILPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCNENDIRVMFSPFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 138 (53.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 47/139 (33%), Positives = 70/139 (50%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N + L + I S ++ GA N+FI +
Sbjct: 353 STMEALTQAYSGIQ--QYAAAALPTLYNQSLLTQQSIGAAGSQKEGP---EGA-NLFIYH 406
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 407 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 466
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 467 GMKRLKVQ--LKRSKNDSK 483
Score = 127 (49.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 46/203 (22%), Positives = 93/203 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + ++ K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
L+ M + + H ++ + D+E N + + +++ +S+ E D++ F +G I
Sbjct: 78 ALHNMKILPG---MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQI 134
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSEREL 286
++R DG S+ FV F A A++A++ + + V A + ++E
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDKEQ 194
Query: 287 E-LKHQFEQNMKEAADKFQGANL 308
+ + Q +Q M++ + NL
Sbjct: 195 KRIAQQLQQQMQQISAASVWGNL 217
Score = 116 (45.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 401 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 460
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 461 MNGFQIGMKRLKVQLKRSKND 481
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 160 (61.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 51/199 (25%), Positives = 88/199 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+DL++ F +YG + V+RD +SK FV F A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + +
Sbjct: 78 ALHNMKV-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FS FG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 183
Query: 379 ALAQRKEDRRARLQVCLLQ 397
A ++D+ + LQ
Sbjct: 184 KFADTQKDKEQKRMAQQLQ 202
Score = 152 (58.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 459 IQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 142 (55.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 43/153 (28%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + ++ L +LF Q G V + V RD S +S G +V F A EA
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + FS+FG I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDIRVMFSSFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 137 (53.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 49/205 (23%), Positives = 94/205 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + + K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVYVG--HFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYG 227
L+ M +V G H ++ + D+E N + + +++ +S+ TE D++ F +G
Sbjct: 78 ALHNM-----KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 132
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSER 284
I ++R DG S+ FV F A A++A++ + + V A + ++
Sbjct: 133 QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Query: 285 ELE-LKHQFEQNMKEAADKFQGANL 308
E + + Q +Q M++ + NL
Sbjct: 193 EQKRMAQQLQQQMQQISAASVWGNL 217
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N L + I S ++ GA N+FI +
Sbjct: 354 STMEALTQAYSGIQ--QYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA-NLFIYH 407
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 408 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 467
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 468 GMKRLKVQ--LKRSKNDSK 484
Score = 116 (45.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 462 MNGFQIGMKRLKVQLKRSKND 482
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 160 (61.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 51/199 (25%), Positives = 88/199 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+DL++ F +YG + V+RD +SK FV F A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + +
Sbjct: 78 ALHNMKV-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FS FG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 183
Query: 379 ALAQRKEDRRARLQVCLLQ 397
A ++D+ + LQ
Sbjct: 184 KFADTQKDKEQKRMAQQLQ 202
Score = 152 (58.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 459 IQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 142 (55.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 43/153 (28%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + ++ L +LF Q G V + V RD S +S G +V F A EA
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + FS+FG I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDIRVMFSSFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 137 (53.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 49/205 (23%), Positives = 94/205 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + + K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVYVG--HFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYG 227
L+ M +V G H ++ + D+E N + + +++ +S+ TE D++ F +G
Sbjct: 78 ALHNM-----KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 132
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSER 284
I ++R DG S+ FV F A A++A++ + + V A + ++
Sbjct: 133 QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Query: 285 ELE-LKHQFEQNMKEAADKFQGANL 308
E + + Q +Q M++ + NL
Sbjct: 193 EQKRMAQQLQQQMQQISAASVWGNL 217
Score = 135 (52.6 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N L + I S ++ GA N+FI +
Sbjct: 354 STMEALTQAYSGIQ--QYAAAALPTLYNQNLLAQQSIGAAGSQKEGP---EGA-NLFIYH 407
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 408 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 467
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 468 GMKRLKVQ--LKRSKNDSK 484
Score = 116 (45.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 462 MNGFQIGMKRLKVQLKRSKND 482
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 170 (64.9 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 51/192 (26%), Positives = 87/192 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + S E+DL++ F +YG + V+RD +SK FV F A A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + ++
Sbjct: 78 ALHNMKI-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCNEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FSPFG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 124 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVV 183
Query: 379 ALAQRKEDRRAR 390
A ++D+ +
Sbjct: 184 KFADTQKDKEQK 195
Score = 152 (58.6 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 402 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 461
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 462 IQSMNGFQIGMKRLKVQLKRSKNDSK 487
Score = 142 (55.0 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 43/153 (28%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + + + L +LF Q G V + V RD S +S G +V F A EA
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + + FS FG I
Sbjct: 78 ALHNMKILPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCNENDIRVMFSPFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 138 (53.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 47/139 (33%), Positives = 70/139 (50%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N + L + I S ++ GA N+FI +
Sbjct: 357 STMEALTQAYSGIQ--QYAAAALPTLYNQSLLTQQSIGAAGSQKEGP---EGA-NLFIYH 410
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 411 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 470
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 471 GMKRLKVQ--LKRSKNDSK 487
Score = 127 (49.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 46/203 (22%), Positives = 93/203 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + ++ K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
L+ M + + H ++ + D+E N + + +++ +S+ E D++ F +G I
Sbjct: 78 ALHNMKILPG---MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQI 134
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSEREL 286
++R DG S+ FV F A A++A++ + + V A + ++E
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDKEQ 194
Query: 287 E-LKHQFEQNMKEAADKFQGANL 308
+ + Q +Q M++ + NL
Sbjct: 195 KRIAQQLQQQMQQISAASVWGNL 217
Score = 116 (45.9 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 405 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 464
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 465 MNGFQIGMKRLKVQLKRSKND 485
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 175 (66.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 55/200 (27%), Positives = 91/200 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + S +E++L++ F YG + V+RD +SK FV F A A
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K +++K + D+ L+I + ++
Sbjct: 78 ALHNIK----------TLPGMHHPIQMKPADSEKSNAVEDR----KLFIGMVSKKCNEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FSPFG I C+++R P G+SRG FV FST A A+ M+ + S P+ V
Sbjct: 124 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVV 183
Query: 379 ALAQRKEDR-RARLQVCLLQ 397
A ++D+ + RLQ L Q
Sbjct: 184 KFADTQKDKEQRRLQQQLAQ 203
Score = 151 (58.2 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 47/163 (28%), Positives = 75/163 (46%)
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
GTI S + G G + G N A ++AL + + + Y A +
Sbjct: 335 GTINSMAALNGGLGAT---GLTN-----GTAGTMDALT-QAYSGIQQYAAAALPTLYSQS 385
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
L+ Q ++ +GANL+I +L D+ + Q+F PFG++ S KV D + +S
Sbjct: 386 LLQQQSAAGSQKEGP--EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLS 443
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ GFV++ P A A+ MNG + K L V L + K D +
Sbjct: 444 KCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486
Score = 143 (55.4 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + + ++ +L +LF G V + V RD S +S G +V F A EA
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + S +FI + K + + FS FG I
Sbjct: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKA 168
GA N+FI +L + + + F FGN++S KV D SK +GFV +DN SAQ A
Sbjct: 402 GA-NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 460
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I+ +NG + K++ V L++ + D++
Sbjct: 461 IQAMNGFQIGMKRLKVQ--LKRSKNDSK 486
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 46/194 (23%), Positives = 89/194 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + ++ K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVY-VGHFLRKQERDTE-INKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
L+ N K + + H ++ + D+E N + +++ +S+ E D++ F +G
Sbjct: 78 ALH----NIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQ 133
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSERE 285
I ++R DG S+ FV F A A++A++ + + V A + ++E
Sbjct: 134 IEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKE 193
Query: 286 LE-LKHQFEQNMKE 298
L+ Q Q M++
Sbjct: 194 QRRLQQQLAQQMQQ 207
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/199 (25%), Positives = 88/199 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+DL++ F +YG + ++RD +SK FV F A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + +
Sbjct: 78 ALHNMKV-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FS FG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVV 183
Query: 379 ALAQRKEDRRARLQVCLLQ 397
A ++D+ + LQ
Sbjct: 184 KFADTQKDKEQKRMAQQLQ 202
Score = 152 (58.6 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 459 IQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 141 (54.7 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 42/153 (27%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + ++ L +LF Q G V + + RD S +S G +V F A EA
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + FS+FG I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDIRVMFSSFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169
Score = 137 (53.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 48/205 (23%), Positives = 94/205 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + + K L + F +G + + D + QSKG FV F ++A +A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVYVG--HFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYG 227
L+ M +V G H ++ + D+E N + + +++ +S+ TE D++ F +G
Sbjct: 78 ALHNM-----KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 132
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSER 284
I ++R DG S+ FV F A A++A++ + + V A + ++
Sbjct: 133 QIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Query: 285 ELE-LKHQFEQNMKEAADKFQGANL 308
E + + Q +Q M++ + NL
Sbjct: 193 EQKRMAQQLQQQMQQISAASVWGNL 217
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N L + I S ++ GA N+FI +
Sbjct: 354 STMEALTQAYSGIQ--QYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA-NLFIYH 407
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 408 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 467
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 468 GMKRLKVQ--LKRSKNDSK 484
Score = 116 (45.9 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 462 MNGFQIGMKRLKVQLKRSKND 482
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/199 (25%), Positives = 88/199 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+DL++ F +YG + ++RD +SK FV F A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + +
Sbjct: 78 ALHNMKV-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FS FG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVV 183
Query: 379 ALAQRKEDRRARLQVCLLQ 397
A ++D+ + LQ
Sbjct: 184 KFADTQKDKEQKRMAQQLQ 202
Score = 152 (58.6 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 400 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 460 IQSMNGFQIGMKRLKVQLKRSKNDSK 485
Score = 141 (54.7 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 42/153 (27%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + ++ L +LF Q G V + + RD S +S G +V F A EA
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + FS+FG I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDIRVMFSSFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169
Score = 137 (53.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 48/205 (23%), Positives = 94/205 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + + K L + F +G + + D + QSKG FV F ++A +A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVYVG--HFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYG 227
L+ M +V G H ++ + D+E N + + +++ +S+ TE D++ F +G
Sbjct: 78 ALHNM-----KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 132
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSER 284
I ++R DG S+ FV F A A++A++ + + V A + ++
Sbjct: 133 QIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Query: 285 ELE-LKHQFEQNMKEAADKFQGANL 308
E + + Q +Q M++ + NL
Sbjct: 193 EQKRMAQQLQQQMQQISAASVWGNL 217
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N L + I S ++ GA N+FI +
Sbjct: 355 STMEALTQAYSGIQ--QYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA-NLFIYH 408
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 409 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 468
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 469 GMKRLKVQ--LKRSKNDSK 485
Score = 116 (45.9 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 403 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 462
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 463 MNGFQIGMKRLKVQLKRSKND 483
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/199 (25%), Positives = 88/199 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+DL++ F +YG + ++RD +SK FV F A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L+I + +
Sbjct: 78 ALHNMKV-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FS FG I C+++R P G+SRG FV F+T A A+ M+ + S P+ V
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVV 183
Query: 379 ALAQRKEDRRARLQVCLLQ 397
A ++D+ + LQ
Sbjct: 184 KFADTQKDKEQKRMAQQLQ 202
Score = 152 (58.6 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ L Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 400 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 460 IQSMNGFQIGMKRLKVQLKRSKNDSK 485
Score = 141 (54.7 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 42/153 (27%), Positives = 69/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + ++ L +LF Q G V + + RD S +S G +V F A EA
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +FI + K + FS+FG I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDR-KLFIGMISKKCTENDIRVMFSSFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169
Score = 137 (53.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 48/205 (23%), Positives = 94/205 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + + K L + F +G + + D + QSKG FV F ++A +A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVYVG--HFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYG 227
L+ M +V G H ++ + D+E N + + +++ +S+ TE D++ F +G
Sbjct: 78 ALHNM-----KVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 132
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSER 284
I ++R DG S+ FV F A A++A++ + + V A + ++
Sbjct: 133 QIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Query: 285 ELE-LKHQFEQNMKEAADKFQGANL 308
E + + Q +Q M++ + NL
Sbjct: 193 EQKRMAQQLQQQMQQISAASVWGNL 217
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 60 STRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
ST +L Y Q AA AL L N L + I S ++ GA N+FI +
Sbjct: 355 STMEALTQAYSGIQ--QYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA-NLFIYH 408
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + + L F FGN++S KV D SK +GFV +DN SAQ AI+ +NG +
Sbjct: 409 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 468
Query: 178 NDKQVYVGHFLRKQERDTE 196
K++ V L++ + D++
Sbjct: 469 GMKRLKVQ--LKRSKNDSK 485
Score = 116 (45.9 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N A A+++
Sbjct: 403 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 462
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 463 MNGFQIGMKRLKVQLKRSKND 483
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 157 (60.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 45/192 (23%), Positives = 86/192 (44%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + + +E+ L++ F YG + V+RD +SK FV + A A
Sbjct: 56 MFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQN 115
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K G +++K + D+ L++ + ++
Sbjct: 116 ALHNMKI-----LPGM-----HHPIQMKPADSEKNNAVEDR----KLFVGMISKKCNEND 161
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FSP+G I C+++R P G+SRG FV F+ + A A+ M+ + S P+ V
Sbjct: 162 IRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVV 221
Query: 379 ALAQRKEDRRAR 390
A ++D+ +
Sbjct: 222 KFADTQKDKEQK 233
Score = 153 (58.9 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 40/137 (29%), Positives = 64/137 (46%)
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
S+ + +EAL + + Y A + L Q + +GANL+I +
Sbjct: 397 SNGSGSTMEALTQAAYSGIQQYAAAALPSLYSQSLLSQQNVSAAGSQKEGPEGANLFIYH 456
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV 371
L D+ L Q+F PFG++ S KV D + +S+ GFV++ P + A+ MNG +
Sbjct: 457 LPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAAIQSMNGFQI 516
Query: 372 VSKPLYVALAQRKEDRR 388
K L V L + K D +
Sbjct: 517 GMKRLKVQLKRSKNDSK 533
Score = 141 (54.7 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 40/153 (26%), Positives = 71/153 (46%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNF---SNAQEAAR 80
++VG + ++ QL +LF G V + V RD S +S G +V + +A EA
Sbjct: 56 MFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQN 115
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + + +F+ + K + + FS +G I
Sbjct: 116 ALHNMKILPGMHHPIQMKPADSEKNNAVEDR-KLFVGMISKKCNENDIRLMFSPYGQIEE 174
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F + AQ AI+ ++
Sbjct: 175 CRILRGPDGLSRGCAFVTFTARQMAQSAIKSMH 207
Score = 135 (52.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 60/274 (21%), Positives = 115/274 (41%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + + L + F +G + V D + QSKG FV + +SA +A
Sbjct: 56 MFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQN 115
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
L+ M + + H ++ + D+E N + + ++V +S+ E D++ F YG I
Sbjct: 116 ALHNMKILPG---MHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQI 172
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSEREL 286
++R DG S+ FV F A A+++++ + + V A + ++E
Sbjct: 173 EECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDKEQ 232
Query: 287 E-LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
+ + Q +Q M++ NL N S+ + L L S + + SG++
Sbjct: 233 KRIAQQLQQQMQQLNAASMWGNLTGLN---SLGPQYLALLQQSASSGNALNNLHPMSGLN 289
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYV 378
A + A++A + + S PL V
Sbjct: 290 AMQNLAALAAAASATQATPTGSSALTTSSSPLSV 323
Score = 128 (50.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKA 168
GA N+FI +L + + L F FGN++S KV D SK +GFV +DN S+Q A
Sbjct: 449 GA-NLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAA 507
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I+ +NG + K++ V L++ + D++
Sbjct: 508 IQSMNGFQIGMKRLKVQ--LKRSKNDSK 533
Score = 112 (44.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++DL + F +G + SA V D SKCFGFV+++N + A+++
Sbjct: 451 NLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAAIQS 510
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 511 MNGFQIGMKRLKVQLKRSKND 531
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 175 (66.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 55/200 (27%), Positives = 91/200 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + S +E++L++ F YG + V+RD +SK FV F A A
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K +++K + D+ L+I + ++
Sbjct: 78 ALHNIK----------TLPGMHHPIQMKPADSEKSNAVEDR----KLFIGMVSKKCNEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FSPFG I C+++R P G+SRG FV FST A A+ M+ + S P+ V
Sbjct: 124 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVV 183
Query: 379 ALAQRKEDR-RARLQVCLLQ 397
A ++D+ + RLQ L Q
Sbjct: 184 KFADTQKDKEQRRLQQQLAQ 203
Score = 150 (57.9 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 46/163 (28%), Positives = 75/163 (46%)
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
GT+ S + G G + G N A ++AL + + + Y A +
Sbjct: 335 GTVNSMAALNGGLGAT---GLTN-----GTAGTMDALT-QAYSGIQQYAAAALPTLYSQS 385
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
L+ Q ++ +GANL+I +L D+ + Q+F PFG++ S KV D + +S
Sbjct: 386 LLQQQSAAGSQKEGP--EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLS 443
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ GFV++ P A A+ MNG + K L V L + K D +
Sbjct: 444 KCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486
Score = 143 (55.4 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + + ++ +L +LF G V + V RD S +S G +V F A EA
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + S +FI + K + + FS FG I
Sbjct: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKA 168
GA N+FI +L + + + F FGN++S KV D SK +GFV +DN SAQ A
Sbjct: 402 GA-NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 460
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I+ +NG + K++ V L++ + D++
Sbjct: 461 IQAMNGFQIGMKRLKVQ--LKRSKNDSK 486
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 46/194 (23%), Positives = 89/194 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + ++ K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVY-VGHFLRKQERDTE-INKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
L+ N K + + H ++ + D+E N + +++ +S+ E D++ F +G
Sbjct: 78 ALH----NIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQ 133
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSERE 285
I ++R DG S+ FV F A A++A++ + + V A + ++E
Sbjct: 134 IEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKE 193
Query: 286 LE-LKHQFEQNMKE 298
L+ Q Q M++
Sbjct: 194 QRRLQQQLAQQMQQ 207
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 175 (66.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/200 (27%), Positives = 91/200 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + S +E++L++ F YG + V+RD +SK FV F A A
Sbjct: 24 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 83
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K +++K + D+ L+I + ++
Sbjct: 84 ALHNIK----------TLPGMHHPIQMKPADSEKSNAVEDR----KLFIGMVSKKCNEND 129
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FSPFG I C+++R P G+SRG FV FST A A+ M+ + S P+ V
Sbjct: 130 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVV 189
Query: 379 ALAQRKEDR-RARLQVCLLQ 397
A ++D+ + RLQ L Q
Sbjct: 190 KFADTQKDKEQRRLQQQLAQ 209
Score = 150 (57.9 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 46/163 (28%), Positives = 75/163 (46%)
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
GT+ S + G G + G N A ++AL + + + Y A +
Sbjct: 341 GTVNSMAALNGGLGAT---GLTN-----GTAGTMDALT-QAYSGIQQYAAAALPTLYSQS 391
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
L+ Q ++ +GANL+I +L D+ + Q+F PFG++ S KV D + +S
Sbjct: 392 LLQQQSAAGSQKEGP--EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLS 449
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ GFV++ P A A+ MNG + K L V L + K D +
Sbjct: 450 KCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 492
Score = 143 (55.4 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + + ++ +L +LF G V + V RD S +S G +V F A EA
Sbjct: 24 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 83
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + S +FI + K + + FS FG I
Sbjct: 84 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEE 142
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 143 CRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 175
Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKA 168
GA N+FI +L + + + F FGN++S KV D SK +GFV +DN SAQ A
Sbjct: 408 GA-NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 466
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I+ +NG + K++ V L++ + D++
Sbjct: 467 IQAMNGFQIGMKRLKVQ--LKRSKNDSK 492
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 46/194 (23%), Positives = 89/194 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + ++ K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 24 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 83
Query: 171 KLNGMLLNDKQVY-VGHFLRKQERDTE-INKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
L+ N K + + H ++ + D+E N + +++ +S+ E D++ F +G
Sbjct: 84 ALH----NIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQ 139
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSERE 285
I ++R DG S+ FV F A A++A++ + + V A + ++E
Sbjct: 140 IEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKE 199
Query: 286 LE-LKHQFEQNMKE 298
L+ Q Q M++
Sbjct: 200 QRRLQQQLAQQMQQ 213
>POMBASE|SPAC1610.03c [details] [associations]
symbol:crp79 "poly(A) binding protein Crp79"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006406
"mRNA export from nucleus" evidence=IMP] [GO:0008143 "poly(A) RNA
binding" evidence=IDA] [GO:0030437 "ascospore formation"
evidence=IDA] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0061013 "regulation of mRNA catabolic process" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC1610.03c GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0006406 GO:GO:0030437
eggNOG:COG0724 GO:GO:0008143 GO:GO:0061013 EMBL:AF432874
EMBL:AB054316 RefSeq:NP_001018242.1 ProteinModelPortal:Q9P6M8
STRING:Q9P6M8 EnsemblFungi:SPAC1610.03c.1 GeneID:3361521
KEGG:spo:SPAC1610.03c OrthoDB:EOG486CPJ NextBio:20811563
Uniprot:Q9P6M8
Length = 710
Score = 198 (74.8 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 48/90 (53%), Positives = 59/90 (65%)
Query: 306 ANLYIKNLDDSIDDEK--LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+NLY+KNLDD++ K L+ LFSPFGSI S + P SGIS+G GFVAF E A RA
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+NG MV K ++V A+RK DR RLQ
Sbjct: 442 KDTLNGMMVGKKRIFVCFAERKSDRIRRLQ 471
Score = 175 (66.7 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 54/142 (38%), Positives = 81/142 (57%)
Query: 91 NGKPIRVMY--SHRD--PSLRKS--GAGNIFIKNLDKA-IDHKA-LHDTFSAFGNILSCK 142
+ KP +++ S R+ PS+ S N+++KNLD I K+ L D FS FG+ILS
Sbjct: 355 DNKPQSIVHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSM 414
Query: 143 VATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+A N G SKGYGFV F E+A +A + LNGM++ K+++V RK +R + ++
Sbjct: 415 LACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRL-QAF 473
Query: 202 FTNVYVKNLSESTTEEDLQKSF 223
F N K SE T ++D + F
Sbjct: 474 FAN---KPTSEQTAQQDNKALF 492
Score = 132 (51.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 43/141 (30%), Positives = 70/141 (49%)
Query: 178 NDKQVYVGHFLRKQERDTEINKSKF--TNVYVKNLSES--TTEEDLQKSFGEYGTITSAV 233
++K + H+ +E I S +N+YVKNL ++ T + L+ F +G+I S++
Sbjct: 355 DNKPQSIVHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSM 414
Query: 234 VM-RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ G SK +GFV F + A RA + LNG K +V A++KS+R L+ F
Sbjct: 415 LACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQ-AF 473
Query: 293 EQNMKEAADKFQGAN--LYIK 311
N + Q N L++K
Sbjct: 474 FANKPTSEQTAQQDNKALFVK 494
Score = 94 (38.1 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T L + +L A VT LY+ F Q G V V + L +R YG V + + A+
Sbjct: 202 TLPLSILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLD-QRGFRYGEVIMDSVESCQNAI 260
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKS 109
E LN P G + V ++ S KS
Sbjct: 261 EKLNNVPYKGSILEVSIKNKASSSVKS 287
Score = 78 (32.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 28/135 (20%), Positives = 61/135 (45%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-----------KVATDLNGQSK 152
P + + I++ N+D + + + FS +G + S + A
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKN 68
Query: 153 G--YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL----RKQERDTEINKSKFT-NV 205
G YGFV+F N ES ++ ++ GM L +++ + + + ++ + N + T NV
Sbjct: 69 GVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKKFKPNDTSITANV 128
Query: 206 YVKNLSESTTEEDLQ 220
+ ++ +T EE+++
Sbjct: 129 FNPSIQNNTDEENVK 143
Score = 78 (32.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 50/257 (19%), Positives = 101/257 (39%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDL-----------STRRSLGYGYV 70
++++YVG++++ ++D ++ F++ GQV S+ R D + + YG+V
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFV 75
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
F NA+ L+ L + + + +P+ F N D +I +
Sbjct: 76 KFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKK---FKPN-DTSITANVFNP 131
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
+ N V L QS+ F+ + EE + + +N + L
Sbjct: 132 SIQ--NNTDEENVKPGLK-QSQIKEFIP-NVEERNWETVRGINSRNPKPETTLTIPSLGL 187
Query: 191 QERDTEINKSKFTNVY---VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ ++ + F + + NL T DL F + G + V + D + +G
Sbjct: 188 EDISMQVVPNAFASTLPLSILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFRYGE 247
Query: 248 VNFENSDDAARAVEALN 264
V ++ + A+E LN
Sbjct: 248 VIMDSVESCQNAIEKLN 264
Score = 74 (31.1 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 32/135 (23%), Positives = 63/135 (46%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-----KSKCF---------GFV 248
+ +YV N+ ++E++ K F +YG + S + R D K+K F GFV
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVES-IFRRLLDSFYPKEKAKPFKPPKNGVQYGFV 75
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F N++ ++ G ++ + KA+ + +L K +F+ N D AN+
Sbjct: 76 KFVNAESIEEVLKDAKGMTLGQRKLTI-KARVVNPAKLTDK-KFKPN-----DTSITANV 128
Query: 309 YIKNLDDSIDDEKLK 323
+ ++ ++ D+E +K
Sbjct: 129 FNPSIQNNTDEENVK 143
Score = 73 (30.8 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
I NL + L++ F G + V+ L+ + YG V D+ ES Q AIEKLN +
Sbjct: 207 ILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFRYGEVIMDSVESCQNAIEKLNNV 266
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 222 (83.2 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 44/66 (66%), Positives = 56/66 (84%)
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE
Sbjct: 5 FSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 386 DRRARL 391
+R+A L
Sbjct: 64 ERQAHL 69
Score = 169 (64.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
+K F +GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K YV AQ
Sbjct: 2 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 280 KKSERELELKHQFEQNM 296
+K ER+ L +Q+ Q M
Sbjct: 61 RKEERQAHLTNQYMQRM 77
Score = 142 (55.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+
Sbjct: 5 FSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 192 ERDTEINKSKFTNVYVKNLS 211
ER + TN Y++ ++
Sbjct: 64 ERQAHL-----TNQYMQRMA 78
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 181 (68.8 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 62/239 (25%), Positives = 116/239 (48%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN--GQ--SKGYGFVQFDNEESAQKAI 169
+FIKNL+ + + L FS G + SC ++ N G+ S G+GFV++ E AQKA+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 170 EKLNGMLLNDK--QVYVGHFLRK----QERDTEINKSKFTN-VYVKNLSESTTEEDLQKS 222
++L G +++ +V + K R ++ + + T+ + V+N+ + ++Q+
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQEL 851
Query: 223 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENSDDAARAVEAL-NGKKFDDKEWYVGKAQ 279
F +G + + + + G G + FGFV+F DA RA +AL + + + A
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVLEWAD 911
Query: 280 KKSERELE-LKHQFEQNMKEAADKFQGANL--YIKNLDDSIDDEKLKQLFSPFGSITSC 335
SE L+ L+ + ++ E K + L ++ L+DS D + + L G+ C
Sbjct: 912 --SEVSLQALRRKTAEHFHEPPKKKRSVVLDEILEQLEDSESDSEEQTLQLRAGTERGC 968
Score = 177 (67.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 47/179 (26%), Positives = 90/179 (50%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD----GDGKSKCF 245
++E + E +++KNL+ STTEE L+ F + G + S + + G+ S F
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGF 776
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFV + + A +A++ L G D + V +++ ++ L + + K+ K
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSK--- 833
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS--RGSGFVAFSTPEEASRA 362
+ ++N+ D ++++LFS FG + + ++ + +G RG GFV F T ++A RA
Sbjct: 834 --ILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 151 (58.2 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR--DPSG--ISRGS 348
E+ +E + G L+IKNL+ S +E LK +FS G + SC + + + +G +S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGF 776
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
GFV + PE+A +AL ++ G +V S L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISER 811
Score = 149 (57.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 39/164 (23%), Positives = 81/164 (49%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR---SLGYGYVNFSNAQEAARA 81
+L++ +L + T+ L +F++ G V S + + + S+G+G+V + ++A +A
Sbjct: 731 TLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKA 790
Query: 82 LEMLNFTPLNGKPIRVMYSHR--DPSL---------RKSGAGNIFIKNLDKAIDHKALHD 130
L+ L ++ + V S R P+L RK I ++N+ D + + +
Sbjct: 791 LKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQE 850
Query: 131 TFSAFGNILSCKVATDLNGQS--KGYGFVQFDNEESAQKAIEKL 172
FS FG + + ++ + G +G+GFV F ++ A++A + L
Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQAL 894
Score = 132 (51.5 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 41/164 (25%), Positives = 77/164 (46%)
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
K A N + G +++ E K + G L N + + G L + E + ++ S
Sbjct: 350 KQALKCNREYMGGRYIEIFRE----KNVPTTKGPLKNSAKPWQGRTLGENEEEEDLADSG 405
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAV 260
++++NL ++TEEDLQ+ F ++G ++ D K K F FV F + A RA
Sbjct: 406 --RLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAY 463
Query: 261 EALNGKKFDDKEWYV--GKAQKKSERELELKHQFEQNMKEAADK 302
++G+ F + +V +K++ + + + + KE+ DK
Sbjct: 464 AEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYKKKKESKDK 507
Score = 129 (50.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 50/208 (24%), Positives = 94/208 (45%)
Query: 190 KQERDTEINKSKFTNVYVKNLSES---TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+ E D N+ + T Y L + TE+++ + + +V R+ G +
Sbjct: 281 RAEADKLANQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLRPVAIRIV-RNAHGNKTGYI 339
Query: 247 FVNFENSDDAARAV----EALNGKK---FDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
FV+F + ++ +A+ E + G+ F +K K K+ + +N +E
Sbjct: 340 FVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQGRTLGEN-EEE 398
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358
D L+I+NL + +E L++LFS FG ++ D + +G FV F PE
Sbjct: 399 EDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEH 458
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKED 386
A RA E++G++ + L+V + K++
Sbjct: 459 AVRAYAEVDGQVFQGRMLHVLPSTIKKE 486
Score = 122 (48.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 67/277 (24%), Positives = 112/277 (40%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+G +FI+NL + L FS FG + D L + KG+ FV F E A +A
Sbjct: 404 SGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAY 463
Query: 170 EKLNGMLLNDKQVYVGHFLRKQE--RDTEINKSKFTNVYV-KNLSESTTEEDLQKSFGEY 226
+++G + + ++V K+E DT+ S + K+ + S++ + F
Sbjct: 464 AEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYKKKKESKDKANSSSSHNWNTLFMGP 523
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE-RE 285
+ A+ + KS+ F + E A V AL G+ Q E R
Sbjct: 524 NAVADAIAQKYNATKSQVF---DHETKGSVAVRV-AL------------GETQLVQEVRR 567
Query: 286 LELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
L + + +AA + + +KNL +L++ F FGS+ +V+ GI
Sbjct: 568 FLLDNGVSLDSFSQAAAERSKTVILVKNLPAGTLVAELQETFGRFGSLG--RVLLPEGGI 625
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+ V F P EA +A + PLY+ A
Sbjct: 626 T---AIVEFLEPLEARKAFRHLAYSKFHHTPLYLEWA 659
Score = 114 (45.2 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 62/262 (23%), Positives = 115/262 (43%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++ +L T+ L LF++ G + + D T++ G+ +V F + A RA +
Sbjct: 407 LFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEV 466
Query: 86 NFTPLNGKPIRVMYS--HRDPSLRKSGAGNIFIK---NLDKAIDHKALHDTFSAF-G-NI 138
+ G+ + V+ S ++ S G+ + K + DKA + + H+ + F G N
Sbjct: 467 DGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYKKKKESKDKA-NSSSSHNWNTLFMGPNA 525
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG--MLLNDKQVYV---GHFLRKQER 193
++ +A N FD+E A+ G L+ + + ++ G L +
Sbjct: 526 VADAIAQKYNATKSQV----FDHETKGSVAVRVALGETQLVQEVRRFLLDNGVSLDSFSQ 581
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+SK T + VKNL T +LQ++FG +G++ V++ +G G + V F
Sbjct: 582 -AAAERSK-TVILVKNLPAGTLVAELQETFGRFGSL-GRVLLPEG-GIT---AIVEFLEP 634
Query: 254 DDAARAVEALNGKKFDDKEWYV 275
+A +A L KF Y+
Sbjct: 635 LEARKAFRHLAYSKFHHTPLYL 656
Score = 101 (40.6 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
+ + VKNL E+ ++ F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNH 61
Query: 263 LNGKKFDD 270
N + F D
Sbjct: 62 FN-RSFID 68
Score = 97 (39.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ +KNL + F++FG + C + +G+ + +GF+ F +EE A A+ N
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFN 63
Query: 174 GMLLNDKQVYV 184
++ ++ V
Sbjct: 64 RSFIDTSRITV 74
Score = 66 (28.3 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
++ ++ + +G GY FV F +EE ++A+ K N + + Y+ F K T+
Sbjct: 323 VAIRIVRNAHGNKTGYIFVDFRSEEEIKQAL-KCNREYMGGR--YIEIFREKNVPTTKGP 379
Query: 199 KSKFTNVYV-KNLSESTTEEDLQKS 222
+ + L E+ EEDL S
Sbjct: 380 LKNSAKPWQGRTLGENEEEEDLADS 404
Score = 59 (25.8 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
L V +L + + + LF G + S++ +D R+ +G++ F + +EA AL
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEALSALN 60
Query: 84 MLNFTPLNGKPIRVMY--SHRDPS 105
N + ++ I V + S DP+
Sbjct: 61 HFNRSFIDTSRITVEFCKSFGDPT 84
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 50/179 (27%), Positives = 83/179 (46%)
Query: 216 EEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
E+DL+ F ++G I V++D G K F+ + D A +A AL+ +K
Sbjct: 21 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK------- 73
Query: 275 VGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS 334
R +++K ++ E D+ L++ L DE ++++F PFG+I
Sbjct: 74 ---TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVRKMFEPFGTIDE 124
Query: 335 CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYVALAQRKEDRRAR 390
C V+R P G S+G FV F T EA A+ ++ + S L V A +++R R
Sbjct: 125 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLR 183
Score = 146 (56.5 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
Identities = 42/152 (27%), Positives = 73/152 (48%)
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
+ + ++ K L F FG I V D G KG F+ + +SA KA L+
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALH---- 70
Query: 178 NDKQVYVG--HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+++ G ++ + D+E ++ + ++V L + T+ED++K F +GTI V+
Sbjct: 71 -EQKTLPGMNRPIQVKPADSE-SRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL 128
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
R DG SK FV F+ +A A+ L+ +
Sbjct: 129 RGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 160
Score = 145 (56.1 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-P 341
+++ + + Q +Q +E D G N++I +L D ++ Q+F PFG + S KV D
Sbjct: 360 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ S+ GFV+F P A A+ MNG + K L V L + K+ R
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 132 (51.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
NIFI +L + + F FG+++S KV D QSK +GFV FDN SAQ AI+
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 172 LNGMLLNDKQVYV 184
+NG + K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 123 (48.4 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEA 262
N+++ +L + T+ ++ + F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 263 LNGKKFDDKEWYVG-KAQKKSER 284
+NG + K V K K + R
Sbjct: 441 MNGFQIGMKRLKVQLKRPKDANR 463
Score = 121 (47.7 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 39/143 (27%), Positives = 62/143 (43%)
Query: 34 NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF---SNAQEAARALEMLNFTPL 90
++ + L +F Q G++ + V +D T G ++ + +A +A AL P
Sbjct: 18 HLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG 77
Query: 91 NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ 150
+PI+V + D R +F+ L K + + F FG I C V +G
Sbjct: 78 MNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGT 134
Query: 151 SKGYGFVQFDNEESAQKAIEKLN 173
SKG FV+F AQ AI L+
Sbjct: 135 SKGCAFVKFQTHAEAQAAINTLH 157
Score = 58 (25.5 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+VG L TD + +F G + V R S G +V F EA A+ L
Sbjct: 98 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDGTSKGCAFVKFQTHAEAQAAINTL 156
Query: 86 N 86
+
Sbjct: 157 H 157
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 175 (66.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 55/200 (27%), Positives = 91/200 (45%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKCFGFVNFENSDDAARAVE 261
++V + S +E++L++ F YG + V+RD +SK FV F A A
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K +++K + D+ L+I + ++
Sbjct: 78 ALHNIK----------TLPGMHHPIQMKPADSEKSNAVEDR----KLFIGMVSKKCNEND 123
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SKPLYV 378
++ +FSPFG I C+++R P G+SRG FV FST A A+ M+ + S P+ V
Sbjct: 124 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVV 183
Query: 379 ALAQRKEDR-RARLQVCLLQ 397
A ++D+ + RLQ L Q
Sbjct: 184 KFADTQKDKEQRRLQQQLAQ 203
Score = 148 (57.2 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
+GANL+I +L D+ + Q+F PFG++ S KV D + +S+ GFV++ P A A
Sbjct: 397 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 456
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
+ MNG + K L V L + K D +
Sbjct: 457 IQAMNGFQIGMKRLKVQLKRSKNDSK 482
Score = 143 (55.4 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSN---AQEAAR 80
++VG + + ++ +L +LF G V + V RD S +S G +V F A EA
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL + P PI++ + + S +FI + K + + FS FG I
Sbjct: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQIEE 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
C++ +G S+G FV F AQ AI+ ++
Sbjct: 137 CRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKA 168
GA N+FI +L + + + F FGN++S KV D SK +GFV +DN SAQ A
Sbjct: 398 GA-NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 456
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I+ +NG + K++ V L++ + D++
Sbjct: 457 IQAMNGFQIGMKRLKVQ--LKRSKNDSK 482
Score = 124 (48.7 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 46/194 (23%), Positives = 89/194 (45%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIE 170
+F+ + ++ K L + F +G + V D + QSKG FV F ++A +A
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 171 KLNGMLLNDKQVY-VGHFLRKQERDTE-INKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
L+ N K + + H ++ + D+E N + +++ +S+ E D++ F +G
Sbjct: 78 ALH----NIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQ 133
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD---KEWYVGKAQKKSERE 285
I ++R DG S+ FV F A A++A++ + + V A + ++E
Sbjct: 134 IEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKE 193
Query: 286 LE-LKHQFEQNMKE 298
L+ Q Q M++
Sbjct: 194 QRRLQQQLAQQMQQ 207
Score = 116 (45.9 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
N+++ +L + ++D+ + F +G + SA V D SKCFGFV+++N A A++A
Sbjct: 400 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 459
Query: 263 LNGKKFDDKEWYVGKAQKKSE 283
+NG + K V + K++
Sbjct: 460 MNGFQIGMKRLKVQLKRSKND 480
WARNING: HSPs involving 1453 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 399 380 0.00090 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1703
No. of states in DFA: 603 (64 KB)
Total size of DFA: 218 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.03u 0.11s 39.14t Elapsed: 00:00:02
Total cpu time: 39.15u 0.12s 39.27t Elapsed: 00:00:02
Start: Thu May 9 18:03:47 2013 End: Thu May 9 18:03:49 2013
WARNINGS ISSUED: 2